Query 037109
Match_columns 118
No_of_seqs 148 out of 1061
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 14:41:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.5 4.7E-14 1.6E-18 102.3 5.6 70 1-70 36-106 (137)
2 3b5d_A Multidrug transporter E 99.0 7.1E-10 2.4E-14 76.8 6.6 68 2-69 37-105 (110)
3 2zxe_G FXYD10, phospholemman-l 72.7 2.5 8.7E-05 27.5 2.6 25 50-74 23-47 (74)
4 3l1l_A Arginine/agmatine antip 71.1 12 0.0004 29.1 6.6 48 27-74 386-433 (445)
5 2jo1_A Phospholemman; FXYD1, N 58.1 9.7 0.00033 24.5 3.2 22 51-72 21-42 (72)
6 2l2t_A Receptor tyrosine-prote 50.1 14 0.00046 21.6 2.7 6 65-70 32-37 (44)
7 2wh0_Q Pkcev3, protein kinase 48.5 7.1 0.00024 20.9 1.1 12 97-108 9-20 (31)
8 2jp3_A FXYD domain-containing 44.6 20 0.00069 22.7 3.0 24 51-74 22-45 (67)
9 4dx5_A Acriflavine resistance 42.9 42 0.0014 30.0 5.9 49 14-63 890-938 (1057)
10 2jwa_A Receptor tyrosine-prote 39.3 28 0.00095 20.2 2.9 7 33-39 14-20 (44)
11 2ks1_B Epidermal growth factor 36.6 30 0.001 20.0 2.7 9 64-72 32-40 (44)
12 4djk_A Probable glutamate/gamm 28.8 1.5E+02 0.0053 23.1 6.6 18 52-69 449-466 (511)
13 3ne5_A Cation efflux system pr 26.8 56 0.0019 29.2 4.0 39 22-60 904-942 (1054)
14 2knc_A Integrin alpha-IIB; tra 26.7 70 0.0024 19.2 3.2 14 54-67 21-34 (54)
15 2l8s_A Integrin alpha-1; trans 26.4 47 0.0016 20.1 2.4 14 54-67 18-31 (54)
16 4dx5_A Acriflavine resistance 26.1 69 0.0023 28.6 4.4 58 5-63 348-405 (1057)
17 3rvy_A ION transport protein; 25.3 36 0.0012 25.3 2.1 17 92-108 261-277 (285)
18 2v50_A Multidrug resistance pr 23.6 80 0.0027 28.3 4.4 57 5-62 348-404 (1052)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.47 E-value=4.7e-14 Score=102.26 Aligned_cols=70 Identities=11% Similarity=0.136 Sum_probs=53.5
Q ss_pred CeehhHHHHHHHHHHHhhcCccchhhh-hhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccc
Q 037109 1 GIVGSGLMVTMTSWCVHIRGPLFVSVF-TPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKG 70 (118)
Q Consensus 1 GI~~S~iay~l~~~ai~~~Gp~~as~~-~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~ 70 (118)
|+++++++|++|++++++.+++++..+ ..+.|++++++|++++||++++.+++|.++|++|+++..+.++
T Consensus 36 ~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~ 106 (137)
T 2i68_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (137)
T ss_dssp HHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 357899999999999999999999888 8999999999999999999999999999999999999987643
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=99.01 E-value=7.1e-10 Score=76.76 Aligned_cols=68 Identities=12% Similarity=0.151 Sum_probs=62.6
Q ss_pred eehhHHHHHHHHHHHhhcCccchhhh-hhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhcc
Q 037109 2 IVGSGLMVTMTSWCVHIRGPLFVSVF-TPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGK 69 (118)
Q Consensus 2 I~~S~iay~l~~~ai~~~Gp~~as~~-~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~ 69 (118)
+++.+++|++|.+++++.+.+.+... ..+.|++++++|++++||++++.+++|.++|+.|+++.....
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45778999999999999999999766 799999999999999999999999999999999999987653
No 3
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=72.68 E-value=2.5 Score=27.48 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=15.2
Q ss_pred hhhhhHHHHHHHHHHHHhccchhhh
Q 037109 50 GSVLGATLIVCGLYAVLWGKGKEMK 74 (118)
Q Consensus 50 ~~iiG~~lIl~Gv~l~~~~~~k~~~ 74 (118)
+.++++++.+.|+++..+++-|.+.
T Consensus 23 GLifA~vLfi~GI~iilS~kcrCk~ 47 (74)
T 2zxe_G 23 GLIVAAVLCVIGIIILLAGKCRCKF 47 (74)
T ss_dssp HHHHHHHHHHHHHHHHTTTC-----
T ss_pred cchhHHHHHHHHHHHHHcCccccCC
Confidence 3456678888899988877655443
No 4
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=71.06 E-value=12 Score=29.11 Aligned_cols=48 Identities=2% Similarity=-0.239 Sum_probs=26.7
Q ss_pred hhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHHHHHhccchhhh
Q 037109 27 FTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLYAVLWGKGKEMK 74 (118)
Q Consensus 27 ~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~l~~~~~~k~~~ 74 (118)
..++.++++.++..+.+-..-......|.++++.|+.+..+.++|+++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 386 AYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred hhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 445666666655544433222234556777788887766654444333
No 5
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=58.09 E-value=9.7 Score=24.54 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=14.9
Q ss_pred hhhhHHHHHHHHHHHHhccchh
Q 037109 51 SVLGATLIVCGLYAVLWGKGKE 72 (118)
Q Consensus 51 ~iiG~~lIl~Gv~l~~~~~~k~ 72 (118)
.++++++.+.|+++..+++-|.
T Consensus 21 LifA~vLfi~GI~iilS~KckC 42 (72)
T 2jo1_A 21 LVIAGILFILGILIVLSRRCRC 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccc
Confidence 4556677788888877665443
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=50.14 E-value=14 Score=21.59 Aligned_cols=6 Identities=17% Similarity=0.080 Sum_probs=2.4
Q ss_pred HHhccc
Q 037109 65 VLWGKG 70 (118)
Q Consensus 65 ~~~~~~ 70 (118)
+.|.++
T Consensus 32 ~~~RRR 37 (44)
T 2l2t_A 32 VYVRRK 37 (44)
T ss_dssp HHHHTT
T ss_pred HHhhhh
Confidence 334433
No 7
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=48.54 E-value=7.1 Score=20.94 Aligned_cols=12 Identities=42% Similarity=0.672 Sum_probs=8.9
Q ss_pred cCchHHHHHhhh
Q 037109 97 TSPNEEIKELND 108 (118)
Q Consensus 97 ~~~~~~~~~~~~ 108 (118)
+.-|||||||..
T Consensus 9 spcdqeikelen 20 (31)
T 2wh0_Q 9 SPCDQEIKELEN 20 (31)
T ss_pred CchHHHHHHHHH
Confidence 345899999853
No 8
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=44.64 E-value=20 Score=22.73 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=16.4
Q ss_pred hhhhHHHHHHHHHHHHhccchhhh
Q 037109 51 SVLGATLIVCGLYAVLWGKGKEMK 74 (118)
Q Consensus 51 ~iiG~~lIl~Gv~l~~~~~~k~~~ 74 (118)
.++++++.+.|+++..+++-|.+.
T Consensus 22 LifA~vLfi~GI~iilS~kcrCk~ 45 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALSGKCKCRR 45 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCcccccC
Confidence 455677888888888777644433
No 9
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=42.88 E-value=42 Score=30.00 Aligned_cols=49 Identities=14% Similarity=-0.075 Sum_probs=31.0
Q ss_pred HHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHH
Q 037109 14 WCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLY 63 (118)
Q Consensus 14 ~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~ 63 (118)
+..+..-.....+......+++++.+..++|-+++...++|.+++ +|+.
T Consensus 890 ~~f~s~~~~l~~l~~i~~~~~~~~~~l~~~g~~l~~~~~~g~i~l-~Gi~ 938 (1057)
T 4dx5_A 890 ALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTT-IGLS 938 (1057)
T ss_dssp HHHTCSSTHHHHHTTHHHHHHHHHHHHHHHTCCBCHHHHHHHHHH-HHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHH-HHHH
Confidence 333433334444444444556677778889999999999987655 4443
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=39.34 E-value=28 Score=20.25 Aligned_cols=7 Identities=29% Similarity=0.368 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 037109 33 VAVAVAA 39 (118)
Q Consensus 33 V~a~ilg 39 (118)
+.+.+.|
T Consensus 14 Ia~~vVG 20 (44)
T 2jwa_A 14 IISAVVG 20 (44)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 4444444
No 11
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=36.63 E-value=30 Score=20.00 Aligned_cols=9 Identities=0% Similarity=0.073 Sum_probs=3.6
Q ss_pred HHHhccchh
Q 037109 64 AVLWGKGKE 72 (118)
Q Consensus 64 l~~~~~~k~ 72 (118)
.+.|.+++.
T Consensus 32 ~~~~RRr~~ 40 (44)
T 2ks1_B 32 GLFMRRRHI 40 (44)
T ss_dssp HHHHHTTTC
T ss_pred HHHhhhhHh
Confidence 334444433
No 12
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=28.80 E-value=1.5e+02 Score=23.14 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHHHHhcc
Q 037109 52 VLGATLIVCGLYAVLWGK 69 (118)
Q Consensus 52 iiG~~lIl~Gv~l~~~~~ 69 (118)
.+++++++.+++...+.+
T Consensus 449 ~~~~~~~~~~i~~~~~~~ 466 (511)
T 4djk_A 449 LVVSFLVVLALPFILYAV 466 (511)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555666666666555443
No 13
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=26.76 E-value=56 Score=29.19 Aligned_cols=39 Identities=5% Similarity=-0.043 Sum_probs=27.4
Q ss_pred cchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHH
Q 037109 22 LFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVC 60 (118)
Q Consensus 22 ~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~ 60 (118)
....+......+++++.+..++|.+++...++|.+++++
T Consensus 904 ~l~il~~ip~~~~g~~~~l~l~g~~l~~~~~~g~i~l~G 942 (1054)
T 3ne5_A 904 ALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAG 942 (1054)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHH
Confidence 333444444556667778889999999999998765543
No 14
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=26.74 E-value=70 Score=19.25 Aligned_cols=14 Identities=29% Similarity=0.672 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHh
Q 037109 54 GATLIVCGLYAVLW 67 (118)
Q Consensus 54 G~~lIl~Gv~l~~~ 67 (118)
|+++++.-+.+..|
T Consensus 21 ~GLllL~li~~~Lw 34 (54)
T 2knc_A 21 GGLLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555554444444
No 15
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=26.43 E-value=47 Score=20.09 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHHh
Q 037109 54 GATLIVCGLYAVLW 67 (118)
Q Consensus 54 G~~lIl~Gv~l~~~ 67 (118)
|++++++-+.+..|
T Consensus 18 ~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 18 AGLLLLMLLILALW 31 (54)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 16
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=26.08 E-value=69 Score=28.63 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHH
Q 037109 5 SGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLY 63 (118)
Q Consensus 5 S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~ 63 (118)
.++.+.+.....+..-+....++.-...+++++....++|-+++...++|.++. .|+.
T Consensus 348 ~~lv~~vl~~~~~s~~~~li~~~~ip~~~~~~~~~l~~~g~~ln~~sl~gl~~~-iGi~ 405 (1057)
T 4dx5_A 348 IILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLA-IGLL 405 (1057)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH-eecc
Confidence 344444444555433333334444444455666777789999999998876544 3443
No 17
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=25.28 E-value=36 Score=25.34 Aligned_cols=17 Identities=41% Similarity=0.479 Sum_probs=0.0
Q ss_pred EEEeecCchHHHHHhhh
Q 037109 92 IEISITSPNEEIKELND 108 (118)
Q Consensus 92 ~~~~~~~~~~~~~~~~~ 108 (118)
+.-...+.++|++++.+
T Consensus 261 ~~~~~~~l~~~~~~l~~ 277 (285)
T 3rvy_A 261 INNEIIKLREEIVELKE 277 (285)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344555555555543
No 18
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=23.65 E-value=80 Score=28.28 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHH
Q 037109 5 SGLMVTMTSWCVHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGL 62 (118)
Q Consensus 5 S~iay~l~~~ai~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv 62 (118)
.++.+.+..+..+..-.....+..-...+++++....++|-+++...++|.++ +.|+
T Consensus 348 ~~lv~lvl~~~~~s~~~~li~~~~ip~s~~~~~~~l~~~g~~ln~~s~~gl~~-~iGi 404 (1052)
T 2v50_A 348 ILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMVL-AIGL 404 (1052)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHHh
Confidence 34445555555543333333333333444556666778899999998876544 4454
Done!