Query 037109
Match_columns 118
No_of_seqs 148 out of 1061
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 14:41:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037109.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037109hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 34.7 51 0.0037 22.5 6.3 15 10-24 363-377 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 16.1 85 0.0062 20.4 4.2 10 12-21 334-343 (417)
3 d1iwga7 f.35.1.1 (A:7-37,A:331 15.0 93 0.0067 20.5 4.2 48 16-63 60-107 (199)
4 d1iwga8 f.35.1.1 (A:513-566,A: 13.5 1.6E+02 0.011 19.6 5.2 28 33-60 95-122 (222)
5 d2axtk1 f.23.36.1 (K:10-46) Ph 12.5 82 0.0059 16.2 2.5 16 27-42 15-30 (37)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 11.3 41 0.003 20.0 1.1 18 57-74 30-47 (91)
7 d1ppjg_ f.23.13.1 (G:) Ubiquin 10.9 68 0.005 18.9 2.1 15 4-18 51-65 (75)
8 d1q90l_ f.23.24.1 (L:) PetL su 10.3 1.1E+02 0.0078 15.1 2.4 19 49-67 8-26 (32)
9 d1jb0i_ f.23.17.1 (I:) Subunit 6.8 1.3E+02 0.0092 15.5 1.8 15 22-36 4-20 (38)
10 d3cx5h1 f.23.13.1 (H:2-94) Ubi 6.7 1.1E+02 0.0077 18.8 1.7 15 4-18 61-75 (93)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=34.66 E-value=51 Score=22.47 Aligned_cols=15 Identities=0% Similarity=-0.095 Sum_probs=7.0
Q ss_pred HHHHHHHhhcCccch
Q 037109 10 TMTSWCVHIRGPLFV 24 (118)
Q Consensus 10 ~l~~~ai~~~Gp~~a 24 (118)
..+....+..++...
T Consensus 363 ~~~~~~~~~~p~~~~ 377 (447)
T d1pw4a_ 363 LIGLHALELAPKKAA 377 (447)
T ss_dssp HHHHHHHHTSCTTHH
T ss_pred HHHHHHHHHcCHHHH
Confidence 334455555554443
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=16.14 E-value=85 Score=20.39 Aligned_cols=10 Identities=0% Similarity=-0.230 Sum_probs=4.6
Q ss_pred HHHHHhhcCc
Q 037109 12 TSWCVHIRGP 21 (118)
Q Consensus 12 ~~~ai~~~Gp 21 (118)
+.+..+..++
T Consensus 334 ~~~~~~~~~~ 343 (417)
T d1pv7a_ 334 FKYITSQFEV 343 (417)
T ss_dssp HHHHHHHSCG
T ss_pred HHHHHHHCCH
Confidence 3444444444
No 3
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=15.02 E-value=93 Score=20.48 Aligned_cols=48 Identities=10% Similarity=0.052 Sum_probs=29.0
Q ss_pred HhhcCccchhhhhhhHHHHHHHHHHHHhCccchhhhhhhHHHHHHHHH
Q 037109 16 VHIRGPLFVSVFTPLSVVAVAVAASLILDEKLHLGSVLGATLIVCGLY 63 (118)
Q Consensus 16 i~~~Gp~~as~~~~L~PV~a~ilg~l~LgE~lt~~~iiG~~lIl~Gv~ 63 (118)
.+..-+....+......++.++....++|.+++.....+..++++...
T Consensus 60 ~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~v 107 (199)
T d1iwga7 60 LQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLV 107 (199)
T ss_dssp CCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHH
T ss_pred HhhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhc
Confidence 343334444444444455556666778899999888887766555433
No 4
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=13.54 E-value=1.6e+02 Score=19.55 Aligned_cols=28 Identities=14% Similarity=-0.037 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhCccchhhhhhhHHHHHH
Q 037109 33 VAVAVAASLILDEKLHLGSVLGATLIVC 60 (118)
Q Consensus 33 V~a~ilg~l~LgE~lt~~~iiG~~lIl~ 60 (118)
+++++.+..+++-+++....+|.++.++
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhh
Confidence 4556778889999999999887766443
No 5
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.55 E-value=82 Score=16.24 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=11.7
Q ss_pred hhhhHHHHHHHHHHHH
Q 037109 27 FTPLSVVAVAVAASLI 42 (118)
Q Consensus 27 ~~~L~PV~a~ilg~l~ 42 (118)
.++++|++-.++++++
T Consensus 15 vlPiIPv~f~lLafVW 30 (37)
T d2axtk1 15 VLPVIPVLFLALAFVW 30 (37)
T ss_dssp HGGGHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH
Confidence 4677888888887764
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=11.29 E-value=41 Score=20.03 Aligned_cols=18 Identities=6% Similarity=-0.221 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhccchhhh
Q 037109 57 LIVCGLYAVLWGKGKEMK 74 (118)
Q Consensus 57 lIl~Gv~l~~~~~~k~~~ 74 (118)
+++.|+++...-|.|+++
T Consensus 30 v~V~~~~~~~~~ryR~~~ 47 (91)
T d1fftb2 30 IPAILMAVGFAWKYRASN 47 (91)
T ss_dssp THHHHHHHTTTTTTTTST
T ss_pred HHHHHHHHhhheeeeccC
Confidence 344444444444444433
No 7
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.87 E-value=68 Score=18.91 Aligned_cols=15 Identities=7% Similarity=0.051 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHhh
Q 037109 4 GSGLMVTMTSWCVHI 18 (118)
Q Consensus 4 ~S~iay~l~~~ai~~ 18 (118)
+-+++|.+|.|+.++
T Consensus 51 Pfi~~Y~iy~W~~~~ 65 (75)
T d1ppjg_ 51 PFVAFYLVYTWGTQE 65 (75)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 457899999999874
No 8
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=10.27 E-value=1.1e+02 Score=15.05 Aligned_cols=19 Identities=32% Similarity=0.630 Sum_probs=13.1
Q ss_pred hhhhhhHHHHHHHHHHHHh
Q 037109 49 LGSVLGATLIVCGLYAVLW 67 (118)
Q Consensus 49 ~~~iiG~~lIl~Gv~l~~~ 67 (118)
.+.++|+...-.|+|+-..
T Consensus 8 vglligal~~tlgiylgll 26 (32)
T d1q90l_ 8 VGLLIGALVFTLGIYLGLL 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556777777888887543
No 9
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=6.76 E-value=1.3e+02 Score=15.51 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=7.4
Q ss_pred cchhhhhh--hHHHHHH
Q 037109 22 LFVSVFTP--LSVVAVA 36 (118)
Q Consensus 22 ~~as~~~~--L~PV~a~ 36 (118)
++++.|++ ++|+++-
T Consensus 4 ~yAAsyLPwI~iPvv~w 20 (38)
T d1jb0i_ 4 SYAASFLPWIFIPVVCW 20 (38)
T ss_dssp SSTTTTHHHHHHHHHHT
T ss_pred hhHHHhcchhHHHHHHH
Confidence 34555554 4555543
No 10
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.68 E-value=1.1e+02 Score=18.80 Aligned_cols=15 Identities=7% Similarity=-0.181 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHhh
Q 037109 4 GSGLMVTMTSWCVHI 18 (118)
Q Consensus 4 ~S~iay~l~~~ai~~ 18 (118)
+-+++|.+|+|+.++
T Consensus 61 Pfi~~Y~iy~Wa~~~ 75 (93)
T d3cx5h1 61 PAGIYWYWWKNGNEY 75 (93)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 467899999999874
Done!