BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037110
         (192 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
 pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
          Length = 319

 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 39/171 (22%)

Query: 56  ACKESGFFQAAVAAFCELHLDEKMKYASGSYSLQIEARLCSLRATKARLGCSSTILG--- 112
           AC+  GFF+           D   K   G Y    E R   L A+KA  G  + +     
Sbjct: 27  ACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEGVQAEVTDXDW 86

Query: 113 ---------------------------------RIQRVAEEVLARLSLLMGMDKDGLKML 139
                                            R++++AEE+L  L   +G++K  LK  
Sbjct: 87  ESTFFLKHLPISNISEVPDLDEEYREVXRDFAKRLEKLAEELLDLLCENLGLEKGYLKNA 146

Query: 140 HREMKQ---AVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQI 187
               K      +++ YP C +PDL+ G+  H+DA  I  L  DD+++ LQ+
Sbjct: 147 FYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQL 197


>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Trans-Dihydroquercetin
 pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
          Length = 356

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 12/83 (14%)

Query: 117 VAEEVLARLSLLMGMDKD-------GLKMLHREMKQAVRMNYYPTCSRPDLVHGVSPHSD 169
           +A +V   LS+ +G++ D       GL+ L  +MK    +NYYP C +P+L  GV  H+D
Sbjct: 179 LATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMK----INYYPKCPQPELALGVEAHTD 234

Query: 170 ACTITFLLLDDEITALQIKHKDK 192
              +TF +L + +  LQ+ ++ K
Sbjct: 235 VSALTF-ILHNMVPGLQLFYEGK 256


>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
           With Naringenin
          Length = 355

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 12/83 (14%)

Query: 117 VAEEVLARLSLLMGMDKD-------GLKMLHREMKQAVRMNYYPTCSRPDLVHGVSPHSD 169
           +A +V   LS+ +G++ D       GL+ L  +MK    +NYYP C +P+L  GV  H+D
Sbjct: 178 LATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMK----INYYPKCPQPELALGVEAHTD 233

Query: 170 ACTITFLLLDDEITALQIKHKDK 192
              +TF +L + +  LQ+ ++ K
Sbjct: 234 VSALTF-ILHNMVPGLQLFYEGK 255


>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
           (Selenomethionine Substituted)
          Length = 356

 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 4/79 (5%)

Query: 117 VAEEVLARLSLLMGMDKDGLKMLHREMKQAV---RMNYYPTCSRPDLVHGVSPHSDACTI 173
           +A +V   LS+ +G++ D L+     +++ +   ++NYYP C +P+L  GV  H+D   +
Sbjct: 179 LATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSAL 238

Query: 174 TFLLLDDEITALQIKHKDK 192
           TF +L + +  LQ+ ++ K
Sbjct: 239 TF-ILHNXVPGLQLFYEGK 256


>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
           Family Protein (Cc_0200) From Caulobacter Crescentus At
           1.44 A Resolution
 pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
           Family Protein (Cc_0200) From Caulobacter Crescentus At
           1.44 A Resolution
          Length = 312

 Score = 26.9 bits (58), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 108 STILGRIQRVAEEVLARLSLLMGMDKDGLKMLHREMKQAVRMNYYPTCSRPDLVHGVSPH 167
           S +   +     +VL  ++  + +++D  K   ++    +R+ +YP   +         H
Sbjct: 132 SWLYNSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAH 191

Query: 168 SDACTITFLLLDDEITALQIKHKD 191
            D  TIT LLL  E   L++  +D
Sbjct: 192 GDINTIT-LLLGAEEGGLEVLDRD 214


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,402,008
Number of Sequences: 62578
Number of extensions: 200525
Number of successful extensions: 439
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 8
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)