Query 037110
Match_columns 192
No_of_seqs 214 out of 1148
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 08:47:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02216 protein SRG1 100.0 3.3E-45 7.2E-50 315.9 16.8 186 7-192 25-257 (357)
2 PLN02758 oxidoreductase, 2OG-F 100.0 6.7E-45 1.5E-49 314.4 14.7 188 4-192 21-259 (361)
3 PLN02912 oxidoreductase, 2OG-F 100.0 1.3E-44 2.7E-49 311.3 16.2 188 4-192 11-243 (348)
4 PLN02947 oxidoreductase 100.0 1.6E-44 3.5E-49 313.0 15.1 188 4-192 32-271 (374)
5 PLN02254 gibberellin 3-beta-di 100.0 4.3E-44 9.3E-49 308.9 16.3 181 6-191 25-255 (358)
6 PLN03178 leucoanthocyanidin di 100.0 1.1E-43 2.3E-48 306.9 14.6 187 5-192 13-257 (360)
7 PLN02515 naringenin,2-oxogluta 100.0 2.4E-43 5.3E-48 304.2 16.0 182 6-190 10-239 (358)
8 PLN02276 gibberellin 20-oxidas 100.0 2.9E-43 6.2E-48 304.3 16.0 181 8-192 17-252 (361)
9 PLN02639 oxidoreductase, 2OG-F 100.0 3.3E-43 7.2E-48 301.5 16.0 187 3-192 5-237 (337)
10 PLN02904 oxidoreductase 100.0 3.3E-43 7.2E-48 303.3 15.0 188 3-192 19-254 (357)
11 PLN02393 leucoanthocyanidin di 100.0 5E-43 1.1E-47 302.9 15.7 187 5-192 20-260 (362)
12 PLN02704 flavonol synthase 100.0 2.5E-42 5.5E-47 295.8 15.3 182 8-192 16-245 (335)
13 PLN00417 oxidoreductase, 2OG-F 100.0 5.7E-42 1.2E-46 294.8 16.7 184 9-192 17-250 (348)
14 PLN02750 oxidoreductase, 2OG-F 100.0 3.8E-41 8.2E-46 289.6 16.8 182 9-192 2-241 (345)
15 PLN02997 flavonol synthase 100.0 6.6E-40 1.4E-44 279.6 15.5 158 33-192 31-229 (325)
16 KOG0143 Iron/ascorbate family 100.0 2.4E-39 5.2E-44 275.6 15.4 160 33-192 16-224 (322)
17 COG3491 PcbC Isopenicillin N s 100.0 1.5E-39 3.2E-44 269.5 13.3 158 33-191 4-220 (322)
18 PLN02299 1-aminocyclopropane-1 100.0 2.5E-39 5.3E-44 275.8 14.7 159 33-192 5-205 (321)
19 PTZ00273 oxidase reductase; Pr 100.0 1.1E-38 2.4E-43 271.8 14.5 159 33-192 4-225 (320)
20 PLN02156 gibberellin 2-beta-di 100.0 9.4E-38 2E-42 267.2 16.1 155 33-192 25-227 (335)
21 PLN02403 aminocyclopropanecarb 100.0 5.5E-38 1.2E-42 265.5 14.4 159 34-192 2-200 (303)
22 PLN03002 oxidoreductase, 2OG-F 100.0 6.1E-38 1.3E-42 268.4 13.5 156 33-190 13-227 (332)
23 PLN02485 oxidoreductase 100.0 1.1E-37 2.4E-42 266.6 14.1 159 33-192 6-236 (329)
24 PLN02984 oxidoreductase, 2OG-F 100.0 2.8E-37 6.1E-42 264.9 15.7 154 33-192 37-246 (341)
25 PLN02365 2-oxoglutarate-depend 100.0 4.6E-36 9.9E-41 253.7 13.7 149 33-189 4-193 (300)
26 PLN03001 oxidoreductase, 2OG-F 100.0 1.7E-30 3.7E-35 215.8 12.8 126 66-192 4-162 (262)
27 PLN03176 flavanone-3-hydroxyla 99.6 4.7E-16 1E-20 115.0 5.5 75 8-83 12-105 (120)
28 PF14226 DIOX_N: non-haem diox 99.4 3.4E-14 7.3E-19 103.7 0.7 49 35-83 1-65 (116)
29 PF03171 2OG-FeII_Oxy: 2OG-Fe( 98.9 2.4E-09 5.2E-14 75.7 3.7 43 145-191 2-46 (98)
30 PF00046 Homeobox: Homeobox do 51.3 17 0.00037 22.2 2.5 38 104-141 12-49 (57)
31 smart00702 P4Hc Prolyl 4-hydro 41.6 80 0.0017 24.0 5.5 53 116-179 59-119 (178)
32 PF13640 2OG-FeII_Oxy_3: 2OG-F 39.5 18 0.00039 24.7 1.4 28 147-180 1-33 (100)
33 COG2084 MmsB 3-hydroxyisobutyr 38.2 2.5E+02 0.0054 23.8 8.3 30 34-65 88-117 (286)
34 TIGR01565 homeo_ZF_HD homeobox 37.0 15 0.00034 23.4 0.6 39 104-142 13-55 (58)
35 cd00086 homeodomain Homeodomai 36.9 38 0.00083 20.4 2.5 38 104-141 12-49 (59)
36 PRK01964 4-oxalocrotonate taut 32.9 64 0.0014 20.3 3.1 24 112-135 15-38 (64)
37 TIGR03849 arch_ComA phosphosul 30.5 20 0.00044 29.6 0.5 35 49-83 72-107 (237)
38 PF01361 Tautomerase: Tautomer 29.8 77 0.0017 19.5 3.1 24 112-135 14-37 (60)
39 PRK02220 4-oxalocrotonate taut 29.3 85 0.0018 19.3 3.2 24 112-135 15-38 (61)
40 PF10055 DUF2292: Uncharacteri 27.9 51 0.0011 19.2 1.7 20 168-189 13-32 (38)
41 TIGR00013 taut 4-oxalocrotonat 27.9 81 0.0018 19.5 2.9 23 112-134 15-37 (63)
42 COG1741 Pirin-related protein 26.7 92 0.002 26.3 3.8 19 160-178 55-73 (276)
43 cd00491 4Oxalocrotonate_Tautom 26.4 90 0.0019 18.8 2.9 23 112-134 14-36 (58)
44 KOG3889 Predicted gamma-butyro 26.3 44 0.00095 28.5 1.7 23 160-188 185-207 (371)
45 PF01381 HTH_3: Helix-turn-hel 25.9 21 0.00046 21.4 -0.1 16 125-140 15-30 (55)
46 PRK00745 4-oxalocrotonate taut 25.7 1.1E+02 0.0024 18.8 3.3 24 112-135 15-38 (62)
47 PRK05467 Fe(II)-dependent oxyg 25.6 1.1E+02 0.0024 25.0 3.9 15 47-61 11-25 (226)
48 smart00389 HOX Homeodomain. DN 25.0 59 0.0013 19.4 1.8 38 104-141 12-49 (56)
49 TIGR00030 S21p ribosomal prote 25.0 1.9E+02 0.0041 18.3 4.7 33 48-80 13-46 (58)
50 PF02679 ComA: (2R)-phospho-3- 24.9 27 0.00058 28.9 0.3 35 49-83 85-120 (244)
51 PRK02289 4-oxalocrotonate taut 24.3 98 0.0021 19.2 2.8 24 112-135 15-38 (60)
52 KOG1742 60s ribosomal protein 24.1 22 0.00048 26.8 -0.3 17 66-82 123-139 (147)
53 PF13443 HTH_26: Cro/C1-type H 22.3 63 0.0014 19.9 1.6 32 104-135 24-56 (63)
54 PTZ00397 macrophage migration 21.9 1E+02 0.0023 21.8 2.9 23 113-135 73-95 (116)
55 PF00356 LacI: Bacterial regul 20.5 98 0.0021 18.5 2.1 17 47-63 28-44 (46)
No 1
>PLN02216 protein SRG1
Probab=100.00 E-value=3.3e-45 Score=315.86 Aligned_cols=186 Identities=32% Similarity=0.528 Sum_probs=155.1
Q ss_pred CCCCCCCccccCCCCCCCCCCCCCCCCCCceeECCCC-CCC--HHHHHHHHHHHHhchhHHH---------------hHH
Q 037110 7 DPQSVPERYIQDQKDRPLDTEFYPASLKLPVMDFSLA-SGD--EDEQRKLDGACKESGFFQA---------------AVA 68 (192)
Q Consensus 7 ~~~~vp~~~~~~~~~~~~~~~~~~~~~~iPvIDls~l-~~d--~~~~~~l~~A~~~~GFf~l---------------~~~ 68 (192)
++++||++|++|++++|...........||||||+.+ +++ .+++++|++||++|||||| .++
T Consensus 25 ~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~ 104 (357)
T PLN02216 25 MITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQ 104 (357)
T ss_pred CCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCCHHHHHHHHHHHH
Confidence 6789999999999998753111111147999999998 654 3689999999999999999 999
Q ss_pred HHhcCCHHHHhhhhc--CC---cc----ccccccccc-----------------cccCc-cc-HHHHHHHHHHHHHHHHH
Q 037110 69 AFCELHLDEKMKYAS--GS---YS----LQIEARLCS-----------------LRATK-AR-LGCSSTILGRIQRVAEE 120 (192)
Q Consensus 69 ~FF~lp~e~K~~~~~--G~---~~----~~~~~~~~~-----------------~wP~~-p~-r~~~~~y~~~~~~l~~~ 120 (192)
+||+||.|+|+++.. +. |. .......+| .||+. ++ |+++++|+++|++|+.+
T Consensus 105 ~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~~y~~~~~~l~~~ 184 (357)
T PLN02216 105 DFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSIAKI 184 (357)
T ss_pred HHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999865 11 21 111222233 69987 78 99999999999999999
Q ss_pred HHHHHHhhcCCChhHHHHHhcC-cccceeeeecCCCCCCCCcccccccccCCceeEEEeCCCCCcceeeeCCC
Q 037110 121 VLARLSLLMGMDKDGLKMLHRE-MKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHKDK 192 (192)
Q Consensus 121 ll~~la~~Lgl~~~~f~~~~~~-~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q~d~v~GLQV~~~G~ 192 (192)
|+++||++||+++++|.+.+.+ ..+.||+||||||+.++.++|+++|||+|+||||+|+++++||||+++|+
T Consensus 185 ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQV~~~g~ 257 (357)
T PLN02216 185 LFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIKKDGK 257 (357)
T ss_pred HHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCceeEEECCE
Confidence 9999999999999999999876 45789999999999988899999999999999999955699999998774
No 2
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=6.7e-45 Score=314.36 Aligned_cols=188 Identities=39% Similarity=0.618 Sum_probs=156.8
Q ss_pred CCCCCCCCCCccccCCCCCCCCCC-CCCCCCCCceeECCCC-CCCH----HHHHHHHHHHHhchhHHH------------
Q 037110 4 LRNDPQSVPERYIQDQKDRPLDTE-FYPASLKLPVMDFSLA-SGDE----DEQRKLDGACKESGFFQA------------ 65 (192)
Q Consensus 4 ~~~~~~~vp~~~~~~~~~~~~~~~-~~~~~~~iPvIDls~l-~~d~----~~~~~l~~A~~~~GFf~l------------ 65 (192)
+.+++++||++|++|+++||.... ......+||||||+.+ +++. +++++|++||++||||||
T Consensus 21 ~~~~~~~vp~~~v~~~~~~p~~~~~~~~~~~~IPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGi~~~l~~~ 100 (361)
T PLN02758 21 RKSKPTTVPERFIRDMDERPDLASDTLHAPDDIPVIDFSRLVKGDNDELFSEILKLRLACEEWGFFQVINHGIELELLEE 100 (361)
T ss_pred HhcCCCCCCHHHcCCchhccccccccccCCCCCCeEEchhhcCCChHHHHHHHHHHHHHHHhCeEEEEecCCCCHHHHHH
Confidence 345789999999999999875321 1112247999999998 5543 358999999999999999
Q ss_pred ---hHHHHhcCCHHHHhhhhc------CC---ccccccccccc-----------------cccCc-cc-HHHHHHHHHHH
Q 037110 66 ---AVAAFCELHLDEKMKYAS------GS---YSLQIEARLCS-----------------LRATK-AR-LGCSSTILGRI 114 (192)
Q Consensus 66 ---~~~~FF~lp~e~K~~~~~------G~---~~~~~~~~~~~-----------------~wP~~-p~-r~~~~~y~~~~ 114 (192)
.+++||+||.|+|+++.. |+ +....+...+| .||+. ++ |+++++|+++|
T Consensus 101 ~~~~~~~FF~LP~eeK~k~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~~~~fr~~~~~y~~~~ 180 (361)
T PLN02758 101 IEKVAREFFMLPLEEKQKYPMAPGTVQGYGQAFVFSEDQKLDWCNMFALGVEPHFIRNPKLWPTKPARFSETLEVYSREI 180 (361)
T ss_pred HHHHHHHHhcCCHHHHHHhcccCCCccccCcccccccccccCeeEEEEeeccCccccccccCccccHHHHHHHHHHHHHH
Confidence 899999999999999875 32 11111222233 69987 78 99999999999
Q ss_pred HHHHHHHHHHHHhhcCCChhHHHHHhcCcccceeeeecCCCCCCCCcccccccccCCceeEEEeCC--CCCcceeeeCCC
Q 037110 115 QRVAEEVLARLSLLMGMDKDGLKMLHREMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDD--EITALQIKHKDK 192 (192)
Q Consensus 115 ~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q~d--~v~GLQV~~~G~ 192 (192)
.+|+.+|+++|+++||+++++|.+.+..+.+.||+||||+|+.++..+|+++|||+|+||||+| + +++||||+++|+
T Consensus 181 ~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lR~~~YP~~~~~~~~~g~~~HtD~g~lTlL~q-d~~~v~GLQV~~~g~ 259 (361)
T PLN02758 181 RELCQRLLKYIAMTLGLKEDRFEEMFGEAVQAVRMNYYPPCSRPDLVLGLSPHSDGSALTVLQQ-GKGSCVGLQILKDNT 259 (361)
T ss_pred HHHHHHHHHHHHHHcCCChhhhHHHhcCccceeeeecCCCCCCcccccCccCccCCceeEEEEe-CCCCCCCeeeeeCCE
Confidence 9999999999999999999999999988888999999999998888999999999999999999 5 489999998774
No 3
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.3e-44 Score=311.29 Aligned_cols=188 Identities=25% Similarity=0.402 Sum_probs=156.3
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCCCCCCCCceeECCCC-CCCH-HHHHHHHHHHHhchhHHH---------------h
Q 037110 4 LRNDPQSVPERYIQDQKDRPLDTEFYPASLKLPVMDFSLA-SGDE-DEQRKLDGACKESGFFQA---------------A 66 (192)
Q Consensus 4 ~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~iPvIDls~l-~~d~-~~~~~l~~A~~~~GFf~l---------------~ 66 (192)
+.+++++||++|++|.+++|..........+||||||+.+ +.+. +++++|++||++|||||| .
T Consensus 11 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~l~~A~~~~GFf~v~nHGI~~~l~~~~~~~ 90 (348)
T PLN02912 11 IASVVDHVPSNYVRPVSDRPNMSEVETSGDSIPLIDLRDLHGPNRADIINQFAHACSSYGFFQIKNHGVPEETIKKMMNV 90 (348)
T ss_pred HhcCCCCCCHHhcCCchhccccccccccCCCCCeEECcccCCcCHHHHHHHHHHHHHHCCEEEEEeCCCCHHHHHHHHHH
Confidence 3567899999999999988742111111247999999998 6554 578999999999999999 9
Q ss_pred HHHHhcCCHHHHhhhhc---CC-------ccccccccccc----------------cccCc-cc-HHHHHHHHHHHHHHH
Q 037110 67 VAAFCELHLDEKMKYAS---GS-------YSLQIEARLCS----------------LRATK-AR-LGCSSTILGRIQRVA 118 (192)
Q Consensus 67 ~~~FF~lp~e~K~~~~~---G~-------~~~~~~~~~~~----------------~wP~~-p~-r~~~~~y~~~~~~l~ 118 (192)
+++||+||.|+|+++.. +. |....+...+| .||+. ++ |+++++|+++|.+|+
T Consensus 91 ~~~FF~LP~eeK~k~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~ 170 (348)
T PLN02912 91 AREFFHQSESERVKHYSADTKKTTRLSTSFNVSKEKVSNWRDFLRLHCYPIEDFIEEWPSTPISFREVTAEYATSVRALV 170 (348)
T ss_pred HHHHhcCCHHHHHhHhhcCCCCcccccccccccccccCCchheEEEeecCcccccccCcchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999543 11 21111111222 59987 78 999999999999999
Q ss_pred HHHHHHHHhhcCCChhHHHHHhcCcccceeeeecCCCCCCCCcccccccccCCceeEEEeCCCCCcceeeeCCC
Q 037110 119 EEVLARLSLLMGMDKDGLKMLHREMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHKDK 192 (192)
Q Consensus 119 ~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q~d~v~GLQV~~~G~ 192 (192)
.+|+++||++||+++++|.+.+..+.+.||+||||||+.++..+|+++|||+|+||||+| |+++||||+++|+
T Consensus 171 ~~il~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~~~~~~~~G~~~HtD~g~lTlL~Q-d~v~GLQV~~~g~ 243 (348)
T PLN02912 171 LTLLEAISESLGLEKDRVSNTLGKHGQHMAINYYPPCPQPELTYGLPGHKDANLITVLLQ-DEVSGLQVFKDGK 243 (348)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhcCccceeeeeecCCCCChhhcCCcCCCcCCCceEEEEE-CCCCceEEEECCc
Confidence 999999999999999999998888888999999999998878999999999999999999 8899999998774
No 4
>PLN02947 oxidoreductase
Probab=100.00 E-value=1.6e-44 Score=313.02 Aligned_cols=188 Identities=32% Similarity=0.485 Sum_probs=155.2
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCC----CCCCCCceeECCCC-CCC-HHHHHHHHHHHHhchhHHH------------
Q 037110 4 LRNDPQSVPERYIQDQKDRPLDTEFY----PASLKLPVMDFSLA-SGD-EDEQRKLDGACKESGFFQA------------ 65 (192)
Q Consensus 4 ~~~~~~~vp~~~~~~~~~~~~~~~~~----~~~~~iPvIDls~l-~~d-~~~~~~l~~A~~~~GFf~l------------ 65 (192)
+.+++++||++|++|+++||...... ..+.+||||||+.+ +.+ .+++++|++||++||||||
T Consensus 32 ~~~~~~~vp~~yv~p~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~l~~Ac~~~GFF~v~nHGIp~~li~~ 111 (374)
T PLN02947 32 CDSGITKVPAKYILPASDRPGLTRDEAIAASGNLKLPVIDLAELRGSNRPHVLATLAAACREYGFFQVVNHGVPSEVIGG 111 (374)
T ss_pred HhcCCCcCCHHhcCCchhccccccccccccCCCCCCCeEECcccCCccHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHH
Confidence 45678999999999999997532100 02247999999998 433 4689999999999999999
Q ss_pred ---hHHHHhcCCHHHHhhhhc-------CC---ccccccccccc----------------cccCc-cc-HHHHHHHHHHH
Q 037110 66 ---AVAAFCELHLDEKMKYAS-------GS---YSLQIEARLCS----------------LRATK-AR-LGCSSTILGRI 114 (192)
Q Consensus 66 ---~~~~FF~lp~e~K~~~~~-------G~---~~~~~~~~~~~----------------~wP~~-p~-r~~~~~y~~~~ 114 (192)
.+++||+||.|+|+++.. |+ +....+...+| .||+. ++ |+++++|+++|
T Consensus 112 ~~~~~~~FF~LP~eeK~k~~~~~~~~~~gyg~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~WP~~~~~fr~~~~~Y~~~~ 191 (374)
T PLN02947 112 MIDVARRFFELPLEERAKYMSADMRAPVRYGTSFNQNKDAVFCWRDFLKLVCHPLSDVLPHWPSSPADLRKVAATYAKAT 191 (374)
T ss_pred HHHHHHHHhcCCHHHHhhhhcccCCCCeeeccccccccccccCceeceeeecCCcccccccCccchHHHHHHHHHHHHHH
Confidence 899999999999999853 21 11111222233 69987 78 99999999999
Q ss_pred HHHHHHHHHHHHhhcCCC---hhHHHHHhcCcccceeeeecCCCCCCCCcccccccccCCceeEEEeCCCCCcceeeeCC
Q 037110 115 QRVAEEVLARLSLLMGMD---KDGLKMLHREMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHKD 191 (192)
Q Consensus 115 ~~l~~~ll~~la~~Lgl~---~~~f~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q~d~v~GLQV~~~G 191 (192)
++|+.+|+++||++||++ .++|.+.+..+.+.||+||||||++++..+|+++|||+|+||||+| |+++||||+++|
T Consensus 192 ~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrln~YPp~p~~~~~~G~~~HTD~g~lTlL~Q-d~v~GLQV~~~g 270 (374)
T PLN02947 192 KRLFLELMEAILESLGIVKRGSDELLEEFEAGSQMMVVNCYPACPEPELTLGMPPHSDYGFLTLLLQ-DEVEGLQIMHAG 270 (374)
T ss_pred HHHHHHHHHHHHHHcCCCccchHHHHHHhcCcceeeeeecCCCCCCcccccCCCCccCCCceEEEEe-cCCCCeeEeECC
Confidence 999999999999999996 4577777777778999999999999888999999999999999999 899999999877
Q ss_pred C
Q 037110 192 K 192 (192)
Q Consensus 192 ~ 192 (192)
+
T Consensus 271 ~ 271 (374)
T PLN02947 271 R 271 (374)
T ss_pred E
Confidence 4
No 5
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=100.00 E-value=4.3e-44 Score=308.85 Aligned_cols=181 Identities=21% Similarity=0.365 Sum_probs=148.6
Q ss_pred CCCCCCCCccccCCCCC--CCCCCC-CCCCCCCceeECCCCCCCHHHHHHHHHHHHhchhHHH---------------hH
Q 037110 6 NDPQSVPERYIQDQKDR--PLDTEF-YPASLKLPVMDFSLASGDEDEQRKLDGACKESGFFQA---------------AV 67 (192)
Q Consensus 6 ~~~~~vp~~~~~~~~~~--~~~~~~-~~~~~~iPvIDls~l~~d~~~~~~l~~A~~~~GFf~l---------------~~ 67 (192)
+.+.+||++|++|+++| |..... ......||||||+. +.++++|++||++|||||| .+
T Consensus 25 ~~~~~vp~~~v~p~~~~~~~~~~~~~~~~~~~iPvIDl~~----~~~~~~l~~Ac~~~GFF~vvnHGI~~~l~~~~~~~~ 100 (358)
T PLN02254 25 TSLQTLPDSHVWTPKDDLLFSSAPSPSTTDESIPVIDLSD----PNALTLIGHACETWGVFQVTNHGIPLSLLDDIESQT 100 (358)
T ss_pred hhhccCChhhcCChhhccCccccccccCcCCCCCeEeCCC----HHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHH
Confidence 34568999999999998 322110 01124799999974 4679999999999999999 99
Q ss_pred HHHhcCCHHHHhhhhc--CC---ccc----cccccccc----------------cccCc-cc-HHHHHHHHHHHHHHHHH
Q 037110 68 AAFCELHLDEKMKYAS--GS---YSL----QIEARLCS----------------LRATK-AR-LGCSSTILGRIQRVAEE 120 (192)
Q Consensus 68 ~~FF~lp~e~K~~~~~--G~---~~~----~~~~~~~~----------------~wP~~-p~-r~~~~~y~~~~~~l~~~ 120 (192)
++||+||.|+|+++.. +. |.. ....+.+| .||+. ++ |+++++|+++|++|+.+
T Consensus 101 ~~FF~LP~EeK~k~~~~~~~~~Gy~~~~~~~~~~~~~w~e~~~~~~~p~~~~~~~wP~~~~~fr~~~~~Y~~~~~~L~~~ 180 (358)
T PLN02254 101 RRLFSLPAQRKLKAARSPDGVSGYGVARISSFFNKKMWSEGFTIMGSPLEHARQLWPQDHTKFCDVMEEYQKEMKKLAER 180 (358)
T ss_pred HHHHcCCHHHHHhhccCCCCcccccccccccccCCCCceeeEEeecCccccchhhCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999865 11 211 11112222 69988 78 99999999999999999
Q ss_pred HHHHHHhhcCCChhHHHHHh-----cCcccceeeeecCCCCCCCCcccccccccCCceeEEEeCCCCCcceeeeCC
Q 037110 121 VLARLSLLMGMDKDGLKMLH-----REMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHKD 191 (192)
Q Consensus 121 ll~~la~~Lgl~~~~f~~~~-----~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q~d~v~GLQV~~~G 191 (192)
|+++|+++||+++++|.+.+ .++.+.||+||||||+.++.++|+++|||+|+||||+| |+++||||+++|
T Consensus 181 ll~~la~~Lgl~~~~~~~~~~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTiL~Q-d~v~GLQV~~~~ 255 (358)
T PLN02254 181 LMWLMLGSLGITEEDIKWAGPKSGSQGAQAALQLNSYPVCPDPDRAMGLAPHTDSSLLTILYQ-SNTSGLQVFREG 255 (358)
T ss_pred HHHHHHHHcCCCHHHHHHHhhcccccCcceeEEEecCCCCCCcccccCcCCccCCCcEEEEec-CCCCCceEECCC
Confidence 99999999999999998766 34667999999999999888999999999999999999 889999999765
No 6
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=100.00 E-value=1.1e-43 Score=306.87 Aligned_cols=187 Identities=31% Similarity=0.498 Sum_probs=155.1
Q ss_pred CCCCCCCCCccccCCCCCCCCCCC-----CCCCCCCceeECCCC-CCCH----HHHHHHHHHHHhchhHHH---------
Q 037110 5 RNDPQSVPERYIQDQKDRPLDTEF-----YPASLKLPVMDFSLA-SGDE----DEQRKLDGACKESGFFQA--------- 65 (192)
Q Consensus 5 ~~~~~~vp~~~~~~~~~~~~~~~~-----~~~~~~iPvIDls~l-~~d~----~~~~~l~~A~~~~GFf~l--------- 65 (192)
.+++.+||++|++|++++|..... ......||||||+.+ ++++ +++++|++||++||||||
T Consensus 13 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l 92 (360)
T PLN03178 13 SSGVSSIPKEYIRPPEERPSIGDVFEEEKKAAGPQVPVVDLSNIESDDEVVREACVEAVRAAAAEWGVMHLVGHGIPADL 92 (360)
T ss_pred hcCCCCCCHHHcCCchhcccccccccccccccCCCCCEEEchhhcCCChhhHHHHHHHHHHHHHHCCEEEEEcCCCCHHH
Confidence 456789999999999998643211 011247999999998 6543 578999999999999999
Q ss_pred ------hHHHHhcCCHHHHhhhhc----CC---ccc----cccccccc-----------------cccCc-cc-HHHHHH
Q 037110 66 ------AVAAFCELHLDEKMKYAS----GS---YSL----QIEARLCS-----------------LRATK-AR-LGCSST 109 (192)
Q Consensus 66 ------~~~~FF~lp~e~K~~~~~----G~---~~~----~~~~~~~~-----------------~wP~~-p~-r~~~~~ 109 (192)
.+++||+||.|+|+++.. +. |.. ......+| .||+. |+ |+++++
T Consensus 93 ~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~p~fr~~~~~ 172 (360)
T PLN03178 93 LDRVRKAGEAFFRLPIEEKEKYANDQARGAAQGYGSKLAANASGQLEWEDYFFHLTLPEDKRDPSLWPKTPPDYVPATSE 172 (360)
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhccCCCCCccccccccccccccccchhHhhccccCCccccccccCCCCchHHHHHHHH
Confidence 899999999999999875 11 311 01111122 69988 88 999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChhHHHHHhcC---cccceeeeecCCCCCCCCcccccccccCCceeEEEeCCCCCcce
Q 037110 110 ILGRIQRVAEEVLARLSLLMGMDKDGLKMLHRE---MKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQ 186 (192)
Q Consensus 110 y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~---~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q~d~v~GLQ 186 (192)
|+++|++|+.+|+++||++||+++++|.+.+.. +.+.||++|||+|+.++..+|+++|||+|+||||+| |+++|||
T Consensus 173 y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~q-d~v~GLQ 251 (360)
T PLN03178 173 YSRSLRSLATKLLAILSLGLGLPEDRLEKEVGGLEELLLQMKINYYPRCPQPDLALGVEAHTDVSALTFILH-NMVPGLQ 251 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcccchhhhheeccCCCCCCccccCcCCccCCCceEEEee-CCCCcee
Confidence 999999999999999999999999999999873 457899999999998888999999999999999999 8999999
Q ss_pred eeeCCC
Q 037110 187 IKHKDK 192 (192)
Q Consensus 187 V~~~G~ 192 (192)
|+++|+
T Consensus 252 V~~~g~ 257 (360)
T PLN03178 252 VLYEGK 257 (360)
T ss_pred EeECCE
Confidence 998764
No 7
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=100.00 E-value=2.4e-43 Score=304.18 Aligned_cols=182 Identities=28% Similarity=0.443 Sum_probs=152.8
Q ss_pred CCCCCCCCccccCCCCCCCCCCCCCCCCCCceeECCCC-CCC---HHHHHHHHHHHHhchhHHH---------------h
Q 037110 6 NDPQSVPERYIQDQKDRPLDTEFYPASLKLPVMDFSLA-SGD---EDEQRKLDGACKESGFFQA---------------A 66 (192)
Q Consensus 6 ~~~~~vp~~~~~~~~~~~~~~~~~~~~~~iPvIDls~l-~~d---~~~~~~l~~A~~~~GFf~l---------------~ 66 (192)
+++++||++|++|.+++|...... .+..||||||+.+ .++ .+++++|++||++|||||| .
T Consensus 10 ~~~~~~p~~~~~~~~~~~~~~~~~-~~~~iPvIDls~~~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~ 88 (358)
T PLN02515 10 AGESTLQSSFVRDEDERPKVAYNQ-FSDEIPVISLAGIDEVGGRRGEICRKIVEACEDWGIFQVVDHGVDANLVADMTRL 88 (358)
T ss_pred cCCCcCCHHhcCCchhccCccccc-cCCCCCEEEChhccCCchHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHH
Confidence 356799999999999987532211 1247999999998 433 2578999999999999999 8
Q ss_pred HHHHhcCCHHHHhhhhc------CCcccc----ccccccc-----------------cccCc-cc-HHHHHHHHHHHHHH
Q 037110 67 VAAFCELHLDEKMKYAS------GSYSLQ----IEARLCS-----------------LRATK-AR-LGCSSTILGRIQRV 117 (192)
Q Consensus 67 ~~~FF~lp~e~K~~~~~------G~~~~~----~~~~~~~-----------------~wP~~-p~-r~~~~~y~~~~~~l 117 (192)
+++||+||.|+|+++.. | |... .....|| .||+. ++ |+++++|+++|.+|
T Consensus 89 ~~~FF~LP~eeK~k~~~~~~~~~G-y~~~~~~~~~~~~d~kE~~~~~~~~~~~~~~n~WP~~~~~fr~~~~~y~~~~~~L 167 (358)
T PLN02515 89 ARDFFALPAEEKLRFDMSGGKKGG-FIVSSHLQGEAVQDWREIVTYFSYPVRTRDYSRWPDKPEGWRAVTEEYSEKLMGL 167 (358)
T ss_pred HHHHhcCCHHHHhhhCcCCCCccC-cccccccccccccCceeeeccccCcccccccccccccchHHHHHHHHHHHHHHHH
Confidence 99999999999999865 2 3110 0111222 69988 78 99999999999999
Q ss_pred HHHHHHHHHhhcCCChhHHHHHhcCcccceeeeecCCCCCCCCcccccccccCCceeEEEeCCCCCcceeeeC
Q 037110 118 AEEVLARLSLLMGMDKDGLKMLHREMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHK 190 (192)
Q Consensus 118 ~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q~d~v~GLQV~~~ 190 (192)
+.+|+++++++||+++++|.+.+..+.+.+|++|||+|+.++..+|+++|||+|+||||+| |+++||||+++
T Consensus 168 ~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~G~~~HTD~g~lTlL~Q-d~v~GLQV~~~ 239 (358)
T PLN02515 168 ACKLLEVLSEAMGLEKEALTKACVDMDQKVVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-DQVGGLQATRD 239 (358)
T ss_pred HHHHHHHHHHhcCCChhhHHHhhcCccceEEEeecCCCCChhhccCCCCCCCCCeEEEEec-CCCCceEEEEC
Confidence 9999999999999999999999887778899999999998888999999999999999999 89999999864
No 8
>PLN02276 gibberellin 20-oxidase
Probab=100.00 E-value=2.9e-43 Score=304.27 Aligned_cols=181 Identities=26% Similarity=0.497 Sum_probs=151.0
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCCCCceeECCCC-CCCH----HHHHHHHHHHHhchhHHH---------------hH
Q 037110 8 PQSVPERYIQDQKDRPLDTEFYPASLKLPVMDFSLA-SGDE----DEQRKLDGACKESGFFQA---------------AV 67 (192)
Q Consensus 8 ~~~vp~~~~~~~~~~~~~~~~~~~~~~iPvIDls~l-~~d~----~~~~~l~~A~~~~GFf~l---------------~~ 67 (192)
.++||++|++|++++|.... ...+||||||+.+ ++++ +++++|++||++|||||| .+
T Consensus 17 ~~~vp~~~~~~~~~~p~~~~---~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~ 93 (361)
T PLN02276 17 QSNIPAQFIWPDEEKPSAAV---PELAVPLIDLGGFLSGDEAATAEAARLVREACLKHGFFQVVNHGVDAALIRAAHEYM 93 (361)
T ss_pred CCCCCHHhcCCccccCCCCC---cCCCCCeEEChhhcCCChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHH
Confidence 35799999999999875321 1247999999998 6553 478999999999999999 99
Q ss_pred HHHhcCCHHHHhhhhc------CCccc---cccccc---------------------cc---cccCc-cc-HHHHHHHHH
Q 037110 68 AAFCELHLDEKMKYAS------GSYSL---QIEARL---------------------CS---LRATK-AR-LGCSSTILG 112 (192)
Q Consensus 68 ~~FF~lp~e~K~~~~~------G~~~~---~~~~~~---------------------~~---~wP~~-p~-r~~~~~y~~ 112 (192)
++||+||.|+|+++.. |+... ...... +| .||.. ++ |+++++|++
T Consensus 94 ~~FF~LP~eeK~k~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fr~~~~~y~~ 173 (361)
T PLN02276 94 DAFFKLPLSEKQRAQRKPGESCGYASSHTGRFSSKLPWKETLSFGYHADGGSSPVVVDYFKSVLGEDFEQFGKVYQEYCE 173 (361)
T ss_pred HHHHcCCHHHHHhhccCCCCccccCccCccccCCCCCeeeeEEEeccCcccccccchhcccccCCcchHHHHHHHHHHHH
Confidence 9999999999999864 32110 000001 11 46655 67 899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCChhHHHHHhcCcccceeeeecCCCCCCCCcccccccccCCceeEEEeCCCCCcceeeeCCC
Q 037110 113 RIQRVAEEVLARLSLLMGMDKDGLKMLHREMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHKDK 192 (192)
Q Consensus 113 ~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q~d~v~GLQV~~~G~ 192 (192)
+|++|+.+|+++||++||+++++|.+++.++.+.||+||||||+.++..+|+++|||+|+||||+| |+++||||+++|+
T Consensus 174 ~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Q-d~v~GLQV~~~g~ 252 (361)
T PLN02276 174 AMKTLSLKIMELLGISLGVDRGYYRKFFEDGDSIMRCNYYPPCQEPELTLGTGPHCDPTSLTILHQ-DQVGGLQVFVDNK 252 (361)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhcCccceeeeEeCCCCCCcccccCCccccCCceeEEEEe-cCCCceEEEECCE
Confidence 999999999999999999999999999988888999999999998888999999999999999999 8899999998764
No 9
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=3.3e-43 Score=301.49 Aligned_cols=187 Identities=27% Similarity=0.475 Sum_probs=154.5
Q ss_pred CCCCCC--CCCCCccccCCCCCCCCCCCCCCCCCCceeECCCCCCCHHHHHHHHHHHHhchhHHH---------------
Q 037110 3 PLRNDP--QSVPERYIQDQKDRPLDTEFYPASLKLPVMDFSLASGDEDEQRKLDGACKESGFFQA--------------- 65 (192)
Q Consensus 3 ~~~~~~--~~vp~~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~d~~~~~~l~~A~~~~GFf~l--------------- 65 (192)
++++++ .+||++|++|++++|+.... .....||||||+.. ...+++++|++||++||||||
T Consensus 5 ~~~~~~~~~~~p~~~~~~~~~~p~~~~~-~~~~~iPvIDls~~-~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~ 82 (337)
T PLN02639 5 LLSTGIRHTTLPESYVRPESERPRLSEV-STCENVPVIDLGSP-DRAQVVQQIGDACRRYGFFQVINHGVSAELVEKMLA 82 (337)
T ss_pred hhhhcCCcCcCCHHhcCCchhccccccc-ccCCCCCeEECCCc-cHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHH
Confidence 355555 89999999999988742211 11247999999974 235689999999999999999
Q ss_pred hHHHHhcCCHHHHhhhhc----CC------ccccccccccc----------------cccCc-cc-HHHHHHHHHHHHHH
Q 037110 66 AVAAFCELHLDEKMKYAS----GS------YSLQIEARLCS----------------LRATK-AR-LGCSSTILGRIQRV 117 (192)
Q Consensus 66 ~~~~FF~lp~e~K~~~~~----G~------~~~~~~~~~~~----------------~wP~~-p~-r~~~~~y~~~~~~l 117 (192)
.+++||+||.|+|+++.. +. +....+...+| .||+. ++ |+++++|+++|.+|
T Consensus 83 ~~~~fF~LP~e~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~p~~~~~n~wP~~~~~fr~~~~~y~~~~~~l 162 (337)
T PLN02639 83 VAHEFFRLPVEEKMKLYSDDPTKTMRLSTSFNVRKEKVHNWRDYLRLHCYPLDKYVPEWPSNPPSFKEIVSTYCREVREL 162 (337)
T ss_pred HHHHHhcCCHHHHhhhhccCCCCccccccccccccCcccCchheEEeeecCCcccchhCcccchHHHHHHHHHHHHHHHH
Confidence 899999999999999754 11 21111111222 59987 78 99999999999999
Q ss_pred HHHHHHHHHhhcCCChhHHHHHhcCcccceeeeecCCCCCCCCcccccccccCCceeEEEeCC-CCCcceeeeCCC
Q 037110 118 AEEVLARLSLLMGMDKDGLKMLHREMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDD-EITALQIKHKDK 192 (192)
Q Consensus 118 ~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q~d-~v~GLQV~~~G~ 192 (192)
+.+|+++||++||+++++|.+.+..+.+.||++|||||+.++..+|+++|||+|+||||+| | +++||||+++|+
T Consensus 163 ~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~q-d~~v~GLQV~~~g~ 237 (337)
T PLN02639 163 GFRLQEAISESLGLEKDYIKNVLGEQGQHMAVNYYPPCPEPELTYGLPAHTDPNALTILLQ-DQQVAGLQVLKDGK 237 (337)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCccEEEEEcCCCCCCcccccCCCCCcCCCceEEEEe-cCCcCceEeecCCe
Confidence 9999999999999999999999888888999999999998888899999999999999999 6 599999998774
No 10
>PLN02904 oxidoreductase
Probab=100.00 E-value=3.3e-43 Score=303.34 Aligned_cols=188 Identities=27% Similarity=0.424 Sum_probs=154.7
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCCCCC-CCCCCceeECCCC-CCC--HHHHHHHHHHHHhchhHHH-------------
Q 037110 3 PLRNDPQSVPERYIQDQKDRPLDTEFYP-ASLKLPVMDFSLA-SGD--EDEQRKLDGACKESGFFQA------------- 65 (192)
Q Consensus 3 ~~~~~~~~vp~~~~~~~~~~~~~~~~~~-~~~~iPvIDls~l-~~d--~~~~~~l~~A~~~~GFf~l------------- 65 (192)
+..+++++||++|++|++++|....... ....||||||+.+ +++ .+++++|++||++||||||
T Consensus 19 l~~~~~~~vp~~~~~~~~~~p~~~~~~~~~~~~iPvIDls~~~~~~~r~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~ 98 (357)
T PLN02904 19 LTNSGVPHVPDRYVLPPSQRPMLGSSIGTSTITLPVIDLSLLHDPLLRSCVIHEIEMACKGFGFFQVINHGIPSSVVKDA 98 (357)
T ss_pred HHhcCCCCCCHHhCCCchhcccccccccccCCCCCEEECcccCCchhHHHHHHHHHHHHHHCceEEEEeCCCCHHHHHHH
Confidence 3456789999999999999975311111 1247999999988 433 3579999999999999999
Q ss_pred --hHHHHhcCCHHHHhhhhc----CC--ccc----cccccccc----------------cccCc-cc-HHHHHHHHHHHH
Q 037110 66 --AVAAFCELHLDEKMKYAS----GS--YSL----QIEARLCS----------------LRATK-AR-LGCSSTILGRIQ 115 (192)
Q Consensus 66 --~~~~FF~lp~e~K~~~~~----G~--~~~----~~~~~~~~----------------~wP~~-p~-r~~~~~y~~~~~ 115 (192)
.+++||+||.|+|+++.. +. |.. ..+...+| .||+. |+ |+++++|+++|.
T Consensus 99 ~~~~~~FF~LP~eeK~k~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~p~~~~~n~WP~~~p~fr~~~~~y~~~~~ 178 (357)
T PLN02904 99 LDAATRFFDLPVDEKMLLVSDNVHEPVRYGTSLNHSTDRVHYWRDFIKHYSHPLSKWINLWPSNPPCYKEKVGKYAEATH 178 (357)
T ss_pred HHHHHHHhcCCHHHHhhhcccCCCCcccccccccccCCCCCCceEEeeeccCCcccccccCcccchHHHHHHHHHHHHHH
Confidence 899999999999999765 11 211 11111122 69987 88 999999999999
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHhcCcccceeeeecCCCCCCCCcccccccccCCceeEEEeCCCCCcceeee-CCC
Q 037110 116 RVAEEVLARLSLLMGMDKDGLKMLHREMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKH-KDK 192 (192)
Q Consensus 116 ~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q~d~v~GLQV~~-~G~ 192 (192)
+|+.+|+++||++||+++++|.+.+..+.+.||+||||||+.++..+|+++|||+|+||||+| + ++||||++ +|+
T Consensus 179 ~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~p~~~~~~g~~~HtD~g~lTlL~q-d-~~GLQV~~~~g~ 254 (357)
T PLN02904 179 VLHKQLIEAISESLGLEKNYLQEEIEEGSQVMAVNCYPACPEPEIALGMPPHSDFGSLTILLQ-S-SQGLQIMDCNKN 254 (357)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhcCcccEEEeeecCCCCCcccccCCcCccCCCceEEEec-C-CCeeeEEeCCCC
Confidence 999999999999999999999999888788999999999998888999999999999999999 6 58999995 564
No 11
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=100.00 E-value=5e-43 Score=302.88 Aligned_cols=187 Identities=32% Similarity=0.568 Sum_probs=154.4
Q ss_pred CCCCCCCCCccccCCCCCCCCCC-CC-CCCCCCceeECCCC-CCC----HHHHHHHHHHHHhchhHHH------------
Q 037110 5 RNDPQSVPERYIQDQKDRPLDTE-FY-PASLKLPVMDFSLA-SGD----EDEQRKLDGACKESGFFQA------------ 65 (192)
Q Consensus 5 ~~~~~~vp~~~~~~~~~~~~~~~-~~-~~~~~iPvIDls~l-~~d----~~~~~~l~~A~~~~GFf~l------------ 65 (192)
.+++++||++|++|++++|.... .. ....+||||||+.+ +++ .+++++|++||++||||||
T Consensus 20 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~r~~~~~~l~~Ac~~~GFF~l~nHGI~~~li~~ 99 (362)
T PLN02393 20 ESGLPTIPDRYVKPPSQRPNSSNTTSAPAEINIPVIDLSSLFSDDARLRDATLRAISEACREWGFFQVVNHGVRPELMDR 99 (362)
T ss_pred hcCCCcCCHHHcCCchhccccccccccCcCCCCCeEECccccCCChHHHHHHHHHHHHHHHHCcEEEEEeCCCCHHHHHH
Confidence 34679999999999999974310 00 11247999999999 655 3689999999999999999
Q ss_pred ---hHHHHhcCCHHHHhhhhc------CCcc-c---cccccccc-----------------cccCc-cc-HHHHHHHHHH
Q 037110 66 ---AVAAFCELHLDEKMKYAS------GSYS-L---QIEARLCS-----------------LRATK-AR-LGCSSTILGR 113 (192)
Q Consensus 66 ---~~~~FF~lp~e~K~~~~~------G~~~-~---~~~~~~~~-----------------~wP~~-p~-r~~~~~y~~~ 113 (192)
.+++||+||.|+|+++.. | |. . ......+| .||+. ++ |+++++|+++
T Consensus 100 ~~~~~~~FF~LP~eeK~~~~~~~~~~~G-y~~~~~~~~~~~~d~~e~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~ 178 (362)
T PLN02393 100 AREAWREFFHLPLEVKQRYANSPATYEG-YGSRLGVEKGAILDWSDYYFLHYLPSSLKDPNKWPSLPPSCRELIEEYGEE 178 (362)
T ss_pred HHHHHHHHHcCCHHHHHhhhcccCcccc-cccccccccccccCchhheeeeecCccccchhhCcccchHHHHHHHHHHHH
Confidence 789999999999999875 3 31 1 11111222 59987 78 9999999999
Q ss_pred HHHHHHHHHHHHHhhcCCChhHHHHHhcCc---ccceeeeecCCCCCCCCcccccccccCCceeEEEeCCCCCcceeeeC
Q 037110 114 IQRVAEEVLARLSLLMGMDKDGLKMLHREM---KQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHK 190 (192)
Q Consensus 114 ~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~---~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q~d~v~GLQV~~~ 190 (192)
|.+++.+|++++|++||+++++|.+.+... .+.||++|||+|+.++..+|+++|||+|+||||+|+++++||||+++
T Consensus 179 ~~~la~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lRl~~YP~~p~~~~~~g~~~HtD~g~lTlL~q~~~v~GLQV~~~ 258 (362)
T PLN02393 179 VVKLCGRLMKVLSVNLGLEEDRLQNAFGGEDGVGACLRVNYYPKCPQPDLTLGLSPHSDPGGMTILLPDDNVAGLQVRRD 258 (362)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHhCCCccccceeeeeecCCCCCcccccccccccCCceEEEEeeCCCCCcceeeEC
Confidence 999999999999999999999999998643 37899999999998888999999999999999998457999999987
Q ss_pred CC
Q 037110 191 DK 192 (192)
Q Consensus 191 G~ 192 (192)
|+
T Consensus 259 g~ 260 (362)
T PLN02393 259 DA 260 (362)
T ss_pred CE
Confidence 74
No 12
>PLN02704 flavonol synthase
Probab=100.00 E-value=2.5e-42 Score=295.82 Aligned_cols=182 Identities=31% Similarity=0.524 Sum_probs=150.6
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCCCCceeECCCCCCCHHHHHHHHHHHHhchhHHH---------------hHHHHhc
Q 037110 8 PQSVPERYIQDQKDRPLDTEFYPASLKLPVMDFSLASGDEDEQRKLDGACKESGFFQA---------------AVAAFCE 72 (192)
Q Consensus 8 ~~~vp~~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~d~~~~~~l~~A~~~~GFf~l---------------~~~~FF~ 72 (192)
+.+||++|++|++++|...........||||||+... ..+++++|++||++|||||| .+++||+
T Consensus 16 ~~~~p~~~~~~~~~~p~~~~~~~~~~~iPvIDls~~~-~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~ 94 (335)
T PLN02704 16 KETIPEEFIRSEKEQPAITTFHGVDPQVPTIDLSDPD-EEKLTRLIAEASKEWGMFQIVNHGIPSEVISKLQKVGKEFFE 94 (335)
T ss_pred cCCCCHHHcCCcccccccccccccCCCCCeEECCCcc-HHHHHHHHHHHHHHcCEEEEEcCCCCHHHHHHHHHHHHHHHc
Confidence 6899999999999998642211122479999999751 24678999999999999999 8999999
Q ss_pred CCHHHHhhhhc--------CCcccc----ccccccc-----------------cccCc-cc-HHHHHHHHHHHHHHHHHH
Q 037110 73 LHLDEKMKYAS--------GSYSLQ----IEARLCS-----------------LRATK-AR-LGCSSTILGRIQRVAEEV 121 (192)
Q Consensus 73 lp~e~K~~~~~--------G~~~~~----~~~~~~~-----------------~wP~~-p~-r~~~~~y~~~~~~l~~~l 121 (192)
||.|+|+++.. | |... .+...+| .||.. ++ |+++++|+++|.+|+.+|
T Consensus 95 LP~e~K~~~~~~~~~~~~~G-y~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~l 173 (335)
T PLN02704 95 LPQEEKEVYAKPPDSKSIEG-YGTKLQKEPEGKKAWVDHLFHRIWPPSAINYQFWPKNPPSYREVNEEYAKYLRGVADKL 173 (335)
T ss_pred CCHHHHHHhhccCCCccccc-ccccccccccCcccceeeeEeeecCCcccchhhCccccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999864 2 3110 0111111 48877 78 999999999999999999
Q ss_pred HHHHHhhcCCChhHHHHHhcCc--ccceeeeecCCCCCCCCcccccccccCCceeEEEeCCCCCcceeeeCCC
Q 037110 122 LARLSLLMGMDKDGLKMLHREM--KQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHKDK 192 (192)
Q Consensus 122 l~~la~~Lgl~~~~f~~~~~~~--~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q~d~v~GLQV~~~G~ 192 (192)
+++|+++||+++++|.+.+... .+.||+||||||+.++..+|+++|||+|+||||+| |+++||||+++|+
T Consensus 174 l~~la~~Lgl~~~~f~~~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~q-d~v~GLQV~~~g~ 245 (335)
T PLN02704 174 FKTLSLGLGLEEDELKEAVGGEELEYLLKINYYPPCPRPDLALGVVAHTDMSAITILVP-NEVQGLQVFRDDH 245 (335)
T ss_pred HHHHHHHcCCCHHHHHHHhcCCchhhhhhhhcCCCCCCcccccCccCccCCcceEEEec-CCCCceeEeECCE
Confidence 9999999999999999887643 46899999999998888999999999999999999 8899999987764
No 13
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=5.7e-42 Score=294.83 Aligned_cols=184 Identities=27% Similarity=0.396 Sum_probs=149.0
Q ss_pred CCCCCccccCCCCCCC--CCCCCCCCCCCceeECCCC-CCCH---HHHHHHHHHHHhchhHHH---------------hH
Q 037110 9 QSVPERYIQDQKDRPL--DTEFYPASLKLPVMDFSLA-SGDE---DEQRKLDGACKESGFFQA---------------AV 67 (192)
Q Consensus 9 ~~vp~~~~~~~~~~~~--~~~~~~~~~~iPvIDls~l-~~d~---~~~~~l~~A~~~~GFf~l---------------~~ 67 (192)
..||++|++|++.++. ..+......+||||||+.+ ++++ +++++|++||++|||||| .+
T Consensus 17 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~l~~~~~~~~ 96 (348)
T PLN00417 17 EGLPERYLHTPTGDGEGQPLNGAVPEMDIPAIDLSLLLSSSDDGREELSKLHSALSTWGVVQVMNHGITEAFLDKIYKLT 96 (348)
T ss_pred CCCCccccCCcccccccccccccccCCCCCeEEChhhcCCCchHHHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHH
Confidence 4899999999988642 1111111137999999988 6543 467999999999999999 89
Q ss_pred HHHhcCCHHHHhhhhc--CC---ccc----cccccccc-----------------cccCc-cc-HHHHHHHHHHHHHHHH
Q 037110 68 AAFCELHLDEKMKYAS--GS---YSL----QIEARLCS-----------------LRATK-AR-LGCSSTILGRIQRVAE 119 (192)
Q Consensus 68 ~~FF~lp~e~K~~~~~--G~---~~~----~~~~~~~~-----------------~wP~~-p~-r~~~~~y~~~~~~l~~ 119 (192)
++||+||.|+|+++.. +. |.. ......+| .||+. ++ |+++++|+++|.+|+.
T Consensus 97 ~~FF~LP~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~ 176 (348)
T PLN00417 97 KQFFALPTEEKQKCAREIGSIQGYGNDMILSDDQVLDWIDRLYLTTYPEDQRQLKFWPQVPVGFRETLHEYTMKQRLVIE 176 (348)
T ss_pred HHHHcCCHHHHHHhhcCCCCccccccccccccCCCcCccceeecccCCcccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999865 11 211 11111222 59987 78 9999999999999999
Q ss_pred HHHHHHHhhcCCChhHHHHHhcC-cccceeeeecCCCCCCCCcccccccccCCceeEEEeCCCCCcceeeeCCC
Q 037110 120 EVLARLSLLMGMDKDGLKMLHRE-MKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHKDK 192 (192)
Q Consensus 120 ~ll~~la~~Lgl~~~~f~~~~~~-~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q~d~v~GLQV~~~G~ 192 (192)
+|+++||++||+++++|.+.+.. ..+.||+||||||+.++.++|+++|||+|+||||+|+++++||||+++|+
T Consensus 177 ~ll~~la~~LGl~~~~f~~~~~~~~~~~lRl~~YPp~~~~~~~~g~~~HTD~g~lTlL~qd~~v~GLQV~~~g~ 250 (348)
T PLN00417 177 KFFKAMARSLELEENCFLEMYGENATMDTRFNMYPPCPRPDKVIGVKPHADGSAFTLLLPDKDVEGLQFLKDGK 250 (348)
T ss_pred HHHHHHHHHcCCCHHHHHHHhccCccceeeeeecCCCCCcccccCCcCccCCCceEEEEecCCCCceeEeECCe
Confidence 99999999999999999998875 34679999999999888889999999999999999933699999998774
No 14
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=3.8e-41 Score=289.57 Aligned_cols=182 Identities=26% Similarity=0.430 Sum_probs=150.5
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCCCCceeECCCC-CCC-HHHHHHHHHHHHhchhHHH---------------hHHHHh
Q 037110 9 QSVPERYIQDQKDRPLDTEFYPASLKLPVMDFSLA-SGD-EDEQRKLDGACKESGFFQA---------------AVAAFC 71 (192)
Q Consensus 9 ~~vp~~~~~~~~~~~~~~~~~~~~~~iPvIDls~l-~~d-~~~~~~l~~A~~~~GFf~l---------------~~~~FF 71 (192)
.++|..|++|.+++|..... .....||||||+.+ ..+ .+++++|++||++|||||| .+++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~iPvIDls~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~~~FF 80 (345)
T PLN02750 2 GEIDPAFIQAPEHRPKFHLT-NSDEEIPVIDLSVSTSHDKTEVASKIGEACKKWGFFQVINHGVPSELRQRVEKVAKEFF 80 (345)
T ss_pred CCCCHHHcCCchhccCcccc-ccCCCCCeEECCCCCcccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 57999999999998853221 11247999999987 434 3578999999999999999 899999
Q ss_pred cCCHHHHhhhhc------CCcc---------------cccc---------cc-----c--cccccCc-cc-HHHHHHHHH
Q 037110 72 ELHLDEKMKYAS------GSYS---------------LQIE---------AR-----L--CSLRATK-AR-LGCSSTILG 112 (192)
Q Consensus 72 ~lp~e~K~~~~~------G~~~---------------~~~~---------~~-----~--~~~wP~~-p~-r~~~~~y~~ 112 (192)
+||.|+|+++.. |+.. .... .. . .-.||+. ++ |+++++|++
T Consensus 81 ~LP~eeK~~~~~~~~~~~GY~~~~~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~ 160 (345)
T PLN02750 81 DQTTEEKRKVKRDEVNPMGYHDSEHTKNIRDWKEVFDFLVQDPTLVPASPDPEDTELRKLTNQWPQNPSHFRELCQEYAR 160 (345)
T ss_pred cCCHHHHHhhccCCCCccCcCcccccccCCCceeEEEEeecccccccccccccccccccccccCCCCcHHHHHHHHHHHH
Confidence 999999999754 3210 0000 00 0 0169987 78 999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCChhHHHHHhcCcccceeeeecCCCCCCCCcccccccccCCceeEEEeCCCCCcceeee--C
Q 037110 113 RIQRVAEEVLARLSLLMGMDKDGLKMLHREMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKH--K 190 (192)
Q Consensus 113 ~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q~d~v~GLQV~~--~ 190 (192)
+|.+|+.+|+++||++||+++++|.+.+.++.+.||+||||||+.++..+|+++|||+|+||||+| |+++||||+. +
T Consensus 161 ~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lR~~~YPp~~~~~~~~g~~~HtD~g~lTlL~q-d~v~GLQV~~~~~ 239 (345)
T PLN02750 161 QVEKLAFKLLELISLSLGLPADRLNGYFKDQISFARFNHYPPCPAPHLALGVGRHKDGGALTVLAQ-DDVGGLQISRRSD 239 (345)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcceEEEEEecCCCCCcccccCcCCCCCCCeEEEEec-CCCCceEEeecCC
Confidence 999999999999999999999999999988889999999999998778899999999999999999 8899999973 5
Q ss_pred CC
Q 037110 191 DK 192 (192)
Q Consensus 191 G~ 192 (192)
|+
T Consensus 240 g~ 241 (345)
T PLN02750 240 GE 241 (345)
T ss_pred Ce
Confidence 53
No 15
>PLN02997 flavonol synthase
Probab=100.00 E-value=6.6e-40 Score=279.64 Aligned_cols=158 Identities=24% Similarity=0.353 Sum_probs=134.4
Q ss_pred CCCceeECCCCCCCHHHHHHHHHHHHhchhHHH---------------hHHHHhcCCHHHHhhhhc-----CCccccccc
Q 037110 33 LKLPVMDFSLASGDEDEQRKLDGACKESGFFQA---------------AVAAFCELHLDEKMKYAS-----GSYSLQIEA 92 (192)
Q Consensus 33 ~~iPvIDls~l~~d~~~~~~l~~A~~~~GFf~l---------------~~~~FF~lp~e~K~~~~~-----G~~~~~~~~ 92 (192)
.+||||||+.+ ...+++++|++||++|||||| .+++||+||.|+|+++.. |+.......
T Consensus 31 ~~IPvIDls~~-~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~GY~~~~~~~ 109 (325)
T PLN02997 31 VDVPVVDLSVS-DEDFLVREVVKASEEWGVFQVVNHGIPTELMRQLQMVGKQFFELPEAEKETVAKEEDFEGYKRNYLGG 109 (325)
T ss_pred CCCCeEECCCC-CHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCccccCcccccC
Confidence 47999999976 224689999999999999999 999999999999999775 331111111
Q ss_pred ccc----------------c-cccCc-cc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHhcCc--ccceeeee
Q 037110 93 RLC----------------S-LRATK-AR-LGCSSTILGRIQRVAEEVLARLSLLMGMDKDGLKMLHREM--KQAVRMNY 151 (192)
Q Consensus 93 ~~~----------------~-~wP~~-p~-r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~--~~~lrl~~ 151 (192)
..+ . .||+. ++ |+++++|+++|.+|+.+|+++|+++||+++++|.+.+... .+.||+||
T Consensus 110 ~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~ia~~Lgl~~~~f~~~~~~~~~~~~lRl~~ 189 (325)
T PLN02997 110 INNWDEHLFHRLSPPSIINYKYWPKNPPQYREVTEEYTKHMKRLTEKILGWLSEGLGLPRETFTQSIGGETAEYVLRVNF 189 (325)
T ss_pred CCCccceeEeeecCccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCcccceeeeec
Confidence 111 1 69987 78 9999999999999999999999999999999999988743 45899999
Q ss_pred cCCCCCCCCcccccccccCCceeEEEeCCCCCcceeeeCCC
Q 037110 152 YPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHKDK 192 (192)
Q Consensus 152 YPp~~~~~~~~g~~~HtD~g~lTlL~q~d~v~GLQV~~~G~ 192 (192)
||||+.++..+|+++|||+|+||||+| |+++||||+++|+
T Consensus 190 YP~~~~~~~~~g~~~HTD~g~lTlL~Q-d~v~GLQV~~~g~ 229 (325)
T PLN02997 190 YPPTQDTELVIGAAAHSDMGAIALLIP-NEVPGLQAFKDEQ 229 (325)
T ss_pred CCCCCCcccccCccCccCCCceEEEec-CCCCCEEEeECCc
Confidence 999998888899999999999999999 8999999998774
No 16
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=100.00 E-value=2.4e-39 Score=275.63 Aligned_cols=160 Identities=38% Similarity=0.581 Sum_probs=136.5
Q ss_pred CCCceeECCCC-CCC---HHHHHHHHHHHHhchhHHH---------------hHHHHhcCCHHHHhhhhc--CC---cc-
Q 037110 33 LKLPVMDFSLA-SGD---EDEQRKLDGACKESGFFQA---------------AVAAFCELHLDEKMKYAS--GS---YS- 87 (192)
Q Consensus 33 ~~iPvIDls~l-~~d---~~~~~~l~~A~~~~GFf~l---------------~~~~FF~lp~e~K~~~~~--G~---~~- 87 (192)
.+||||||+.+ ..+ .+++++|++||++|||||| .+++||+||.|+|+++.. +. |.
T Consensus 16 ~~iPvIDls~~~~~~~~~~~~~~~i~~Ace~wGfFqviNHGI~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~~~~~gY~~ 95 (322)
T KOG0143|consen 16 LDIPVIDLSCLDSDDPGREEVVEKLREACEEWGFFQVINHGISLELLDKVKEASKEFFELPLEEKLKVASEPGKYRGYGT 95 (322)
T ss_pred CCcCeEECCCCCCcchhHHHHHHHHHHHHHHCCeeEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHHhhccCCCCcccccc
Confidence 57999999987 443 4678999999999999999 999999999999999887 21 21
Q ss_pred ---ccccccccc-----------------cccCc-cc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHhcC-cc
Q 037110 88 ---LQIEARLCS-----------------LRATK-AR-LGCSSTILGRIQRVAEEVLARLSLLMGMDKDGLKMLHRE-MK 144 (192)
Q Consensus 88 ---~~~~~~~~~-----------------~wP~~-p~-r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~-~~ 144 (192)
.......+| .||+. +. |+++++|.+++.+|+..|+++++++||++.+++.+.+.. ..
T Consensus 96 ~~~~~~~~~~~w~d~~~~~~~p~~~~~~~~wp~~p~~~re~~~eY~~~~~~L~~~l~~~l~eslgl~~~~~~~~~~~~~~ 175 (322)
T KOG0143|consen 96 SFILSPLKELDWRDYLTLLSAPESSFDPNLWPEGPPEFRETMEEYAKEVMELSEKLLRLLSESLGLEPEYLEKLFGETGG 175 (322)
T ss_pred cccccccccccchhheeeeccCccccCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCCccc
Confidence 111223333 78888 56 999999999999999999999999999998777778776 46
Q ss_pred cceeeeecCCCCCCCCcccccccccCCceeEEEeCCCCCcceee-eCCC
Q 037110 145 QAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIK-HKDK 192 (192)
Q Consensus 145 ~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q~d~v~GLQV~-~~G~ 192 (192)
+.||+|||||||+++.++|+++|||.|+||+|+|+|+|+||||. ++|+
T Consensus 176 ~~~r~n~Yp~cp~pe~~lGl~~HtD~~~lTiLlqd~~V~GLQv~~~dg~ 224 (322)
T KOG0143|consen 176 QVMRLNYYPPCPEPELTLGLGAHTDKSFLTILLQDDDVGGLQVFTKDGK 224 (322)
T ss_pred eEEEEeecCCCcCccccccccCccCcCceEEEEccCCcCceEEEecCCe
Confidence 69999999999999999999999999999999994489999999 4774
No 17
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=100.00 E-value=1.5e-39 Score=269.54 Aligned_cols=158 Identities=22% Similarity=0.373 Sum_probs=137.5
Q ss_pred CCCceeECCCC-CCCH----HHHHHHHHHHHhchhHHH---------------hHHHHhcCCHHHHhhhhc--CC----c
Q 037110 33 LKLPVMDFSLA-SGDE----DEQRKLDGACKESGFFQA---------------AVAAFCELHLDEKMKYAS--GS----Y 86 (192)
Q Consensus 33 ~~iPvIDls~l-~~d~----~~~~~l~~A~~~~GFf~l---------------~~~~FF~lp~e~K~~~~~--G~----~ 86 (192)
..||+|||+.+ .+++ .++++|++||++|||||| .+|+||+||.|+|+++.+ |. |
T Consensus 4 ~~lp~idls~~~~~~~~~~~~~~~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqFFaLp~eeK~~~~~~~~~~~rGY 83 (322)
T COG3491 4 RDLPIIDLSELAGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVLGRQHRGY 83 (322)
T ss_pred CcCceeccHHhcCCCcHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCcccccc
Confidence 57999999999 5443 689999999999999999 999999999999999988 21 2
Q ss_pred ccc----cc--------------------ccccc-------cccCccc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 037110 87 SLQ----IE--------------------ARLCS-------LRATKAR-LGCSSTILGRIQRVAEEVLARLSLLMGMDKD 134 (192)
Q Consensus 87 ~~~----~~--------------------~~~~~-------~wP~~p~-r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~ 134 (192)
... .. ...+| .||..|+ |+++..|+++|.+++.+||++||++|+++++
T Consensus 84 ~~~~~E~t~g~~d~kE~~d~g~~~~~~~~~~~~~~~~~gpN~wP~ip~~r~~ll~~~~~~~~~~~rLL~aiA~~LdL~~d 163 (322)
T COG3491 84 TPHGGELTDGEPDYKEGLDMGPDLDAELAGVRAGTPLHGPNLWPAIPGLRDALLQYYRAMTAVGLRLLRAIALGLDLPED 163 (322)
T ss_pred ccCcccccCCccchhhhcccccccccccCCCccCCCcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 210 00 11222 8993399 9999999999999999999999999999999
Q ss_pred HHHHHhcCcccceeeeecCCCCCCCCcccccccccCCceeEEEeCCCCCcceeeeC-C
Q 037110 135 GLKMLHREMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHK-D 191 (192)
Q Consensus 135 ~f~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q~d~v~GLQV~~~-G 191 (192)
+|...++++.++||++|||+.+..++..|.|+|||+|+||||+| |+++||||+.. |
T Consensus 164 ~Fd~~~~d~~~~~RLlrYP~~~~~~~~~~~GaHtD~G~lTLl~Q-d~~~GLqv~~~~g 220 (322)
T COG3491 164 FFDKRTSDPNSVLRLLRYPSRPAREGADGVGAHTDYGLLTLLFQ-DDVGGLEVRPPNG 220 (322)
T ss_pred hhhhccCCchheEEEEecCCCcccccccccccccCCCeEEEEEe-cccCCeEEecCCC
Confidence 99999999999999999999998888889999999999999999 99999999954 5
No 18
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=100.00 E-value=2.5e-39 Score=275.81 Aligned_cols=159 Identities=23% Similarity=0.390 Sum_probs=133.8
Q ss_pred CCCceeECCCC-CCCH-HHHHHHHHHHHhchhHHH---------------hHHHHhcCCHHHHhhhhc---CC--ccccc
Q 037110 33 LKLPVMDFSLA-SGDE-DEQRKLDGACKESGFFQA---------------AVAAFCELHLDEKMKYAS---GS--YSLQI 90 (192)
Q Consensus 33 ~~iPvIDls~l-~~d~-~~~~~l~~A~~~~GFf~l---------------~~~~FF~lp~e~K~~~~~---G~--~~~~~ 90 (192)
.+||||||+.+ ..+. +++++|++||++|||||| .+++||+||.|+|+++.. |+ +.. .
T Consensus 5 ~~iPvIDls~~~~~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~~~~gy~~~~~-~ 83 (321)
T PLN02299 5 ESFPVIDMEKLNGEERAATMELIKDACENWGFFELVNHGISHELMDEVEKMTKEHYKKCMEQRFKEMVASKGLEGVQT-E 83 (321)
T ss_pred CCCCEEECcCCCcccHHHHHHHHHHHHHhcCEEEEECCCCCHHHHHHHHHHHHHHhCCCHHHHHhcccCCCCcccccc-c
Confidence 47999999998 4443 589999999999999999 899999999999999754 42 110 0
Q ss_pred ccccc---------------ccccCc-cc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHhcC---cccceeee
Q 037110 91 EARLC---------------SLRATK-AR-LGCSSTILGRIQRVAEEVLARLSLLMGMDKDGLKMLHRE---MKQAVRMN 150 (192)
Q Consensus 91 ~~~~~---------------~~wP~~-p~-r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~---~~~~lrl~ 150 (192)
....| +.||+. ++ |+++++|+++|.+|+.+|+++|+++||+++++|.+.+.+ +.+.||++
T Consensus 84 ~~~~d~ke~~~~~~~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lRl~ 163 (321)
T PLN02299 84 VEDLDWESTFFLRHLPESNLADIPDLDDEYRKVMKDFALELEKLAEELLDLLCENLGLEKGYLKKAFHGSKGPTFGTKVS 163 (321)
T ss_pred CCCcCHHHHcccccCCccccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCccceeeeE
Confidence 01111 269987 78 999999999999999999999999999999999988853 45679999
Q ss_pred ecCCCCCCCCcccccccccCCceeEEEeCCCCCcceeeeCCC
Q 037110 151 YYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHKDK 192 (192)
Q Consensus 151 ~YPp~~~~~~~~g~~~HtD~g~lTlL~q~d~v~GLQV~~~G~ 192 (192)
|||||+.++..+|+++|||+|+||||+|+++++||||+++|+
T Consensus 164 ~YPp~~~~~~~~G~~~HTD~g~lTlL~qd~~v~GLQV~~~g~ 205 (321)
T PLN02299 164 NYPPCPKPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGE 205 (321)
T ss_pred ecCCCCCcccccCccCccCCCeEEEEEecCCCCCcCcccCCe
Confidence 999999888789999999999999999933599999997764
No 19
>PTZ00273 oxidase reductase; Provisional
Probab=100.00 E-value=1.1e-38 Score=271.82 Aligned_cols=159 Identities=25% Similarity=0.352 Sum_probs=134.2
Q ss_pred CCCceeECCCC-CCCH----HHHHHHHHHHHhchhHHH---------------hHHHHhcCCHHHHhhhhc-------CC
Q 037110 33 LKLPVMDFSLA-SGDE----DEQRKLDGACKESGFFQA---------------AVAAFCELHLDEKMKYAS-------GS 85 (192)
Q Consensus 33 ~~iPvIDls~l-~~d~----~~~~~l~~A~~~~GFf~l---------------~~~~FF~lp~e~K~~~~~-------G~ 85 (192)
.+||||||+.+ ++++ +++++|++||++|||||| ++++||+||.|+|+++.. |+
T Consensus 4 ~~iPvIDl~~~~~~~~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~GY 83 (320)
T PTZ00273 4 ASLPVIDVSPLFGGESAEKMRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSLPMEEKLKIDIRKSRLHRGY 83 (320)
T ss_pred CCCCEEecHHhcCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCCCCCC
Confidence 47999999998 6553 478999999999999999 899999999999999854 32
Q ss_pred cccc-----cccccc-------------------------c--cccCc-cc-HHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 037110 86 YSLQ-----IEARLC-------------------------S--LRATK-AR-LGCSSTILGRIQRVAEEVLARLSLLMGM 131 (192)
Q Consensus 86 ~~~~-----~~~~~~-------------------------~--~wP~~-p~-r~~~~~y~~~~~~l~~~ll~~la~~Lgl 131 (192)
.... .....| . .||+. |+ |+++++|+++|.+|+.+|+++||++||+
T Consensus 84 ~~~~~e~~~~~~~~d~kE~~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl 163 (320)
T PTZ00273 84 GAFGAEQLDPSKPYDYKETFDMGCHLPKDHPDVMAGKPLRGPNNHPTQVEGWMELMETHYRDMQALALVLLRALALAIGL 163 (320)
T ss_pred CCccccccCCCCCCCccceEEeeccCCcccchhhccccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 1000 000001 1 68877 78 9999999999999999999999999999
Q ss_pred ChhHHHHHhcCcccceeeeecCCCCCC-CCcccccccccCCceeEEEeCCCCCcceee-eCCC
Q 037110 132 DKDGLKMLHREMKQAVRMNYYPTCSRP-DLVHGVSPHSDACTITFLLLDDEITALQIK-HKDK 192 (192)
Q Consensus 132 ~~~~f~~~~~~~~~~lrl~~YPp~~~~-~~~~g~~~HtD~g~lTlL~q~d~v~GLQV~-~~G~ 192 (192)
++++|.+.+..+.+.||+||||||+.+ +..+|+++|||+|+||||+| |+++||||+ ++|+
T Consensus 164 ~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~q-d~~~GLqV~~~~g~ 225 (320)
T PTZ00273 164 REDFFDSKFMEPLSVFRMKHYPALPQTKKGRTVCGEHTDYGIITLLYQ-DSVGGLQVRNLSGE 225 (320)
T ss_pred CHHHHHHhhCCCcceeeeeecCCCCCccccCcccccccCCCeEEEEec-CCCCceEEECCCCC
Confidence 999999999888889999999999863 46899999999999999999 889999998 4664
No 20
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=100.00 E-value=9.4e-38 Score=267.25 Aligned_cols=155 Identities=23% Similarity=0.352 Sum_probs=127.5
Q ss_pred CCCceeECCCCCCCHHHHHHHHHHHHhchhHHH---------------hHHHHhcCCHHHHhhhhc----CCc--ccccc
Q 037110 33 LKLPVMDFSLASGDEDEQRKLDGACKESGFFQA---------------AVAAFCELHLDEKMKYAS----GSY--SLQIE 91 (192)
Q Consensus 33 ~~iPvIDls~l~~d~~~~~~l~~A~~~~GFf~l---------------~~~~FF~lp~e~K~~~~~----G~~--~~~~~ 91 (192)
..||||||+. +++.++|++||++|||||| .+++||+||.|+|+++.. |+. .....
T Consensus 25 ~~iPvIDls~----~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~~~~Gy~~~~~~~~ 100 (335)
T PLN02156 25 VLIPVIDLTD----SDAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLKDKAGPPDPFGYGTKRIGPN 100 (335)
T ss_pred CCCCcccCCC----hHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhcCCCCCcccCccccCCC
Confidence 4799999984 3467899999999999999 999999999999999854 320 00000
Q ss_pred ccccc-------------------cccCc-cc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCC-hhHHHHHhc--Ccccce
Q 037110 92 ARLCS-------------------LRATK-AR-LGCSSTILGRIQRVAEEVLARLSLLMGMD-KDGLKMLHR--EMKQAV 147 (192)
Q Consensus 92 ~~~~~-------------------~wP~~-p~-r~~~~~y~~~~~~l~~~ll~~la~~Lgl~-~~~f~~~~~--~~~~~l 147 (192)
...+| .||.. ++ |+++++|+++|++|+.+|+++||++||++ +++|.+++. .+.+.|
T Consensus 101 ~~~~~~e~~~~~~~~~~~~~~~~~~wp~~p~~fr~~~~~Y~~~~~~L~~~ll~~la~~LGl~~~~~f~~~~~~~~~~~~l 180 (335)
T PLN02156 101 GDVGWLEYILLNANLCLESHKTTAVFRHTPAIFREAVEEYMKEMKRMSSKVLEMVEEELKIEPKEKLSKLVKVKESDSCL 180 (335)
T ss_pred CCCCceeeEeeecCCccccccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcHHHHHHHhcCCCccceE
Confidence 01111 68877 67 99999999999999999999999999996 478998875 346789
Q ss_pred eeeecCCCCCC--CCcccccccccCCceeEEEeCCCCCcceee-eCCC
Q 037110 148 RMNYYPTCSRP--DLVHGVSPHSDACTITFLLLDDEITALQIK-HKDK 192 (192)
Q Consensus 148 rl~~YPp~~~~--~~~~g~~~HtD~g~lTlL~q~d~v~GLQV~-~~G~ 192 (192)
|+||||||+.. +..+|+++|||+|+||||+| |+++||||+ ++|+
T Consensus 181 Rl~~YP~~~~~~~~~~~g~~~HTD~g~lTlL~Q-d~v~GLQV~~~~g~ 227 (335)
T PLN02156 181 RMNHYPEKEETPEKVEIGFGEHTDPQLISLLRS-NDTAGLQICVKDGT 227 (335)
T ss_pred eEEeCCCCCCCccccccCCCCccCCCceEEEEe-CCCCceEEEeCCCC
Confidence 99999999853 35799999999999999999 889999998 5664
No 21
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=100.00 E-value=5.5e-38 Score=265.48 Aligned_cols=159 Identities=26% Similarity=0.407 Sum_probs=129.9
Q ss_pred CCceeECCCC-CCC-HHHHHHHHHHHHhchhHHH---------------hHHHHhcCCHHHHhhhhc--CCc-ccccccc
Q 037110 34 KLPVMDFSLA-SGD-EDEQRKLDGACKESGFFQA---------------AVAAFCELHLDEKMKYAS--GSY-SLQIEAR 93 (192)
Q Consensus 34 ~iPvIDls~l-~~d-~~~~~~l~~A~~~~GFf~l---------------~~~~FF~lp~e~K~~~~~--G~~-~~~~~~~ 93 (192)
+||||||+.+ ..+ .+++++|++||++|||||| .+++||+||.++|..... ..+ .......
T Consensus 2 ~iPvIDls~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~e~k~~~~~~~~~~~~~~~~~~ 81 (303)
T PLN02403 2 EIPVIDFDQLDGEKRSKTMSLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYEENLKESFYESEIAKALDNEGKTSD 81 (303)
T ss_pred CCCeEeCccCCcccHHHHHHHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccccCcccccCCCCC
Confidence 6999999988 433 3679999999999999999 999999999999962111 111 0011111
Q ss_pred ccc---------------cccCc-cc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHhc---CcccceeeeecC
Q 037110 94 LCS---------------LRATK-AR-LGCSSTILGRIQRVAEEVLARLSLLMGMDKDGLKMLHR---EMKQAVRMNYYP 153 (192)
Q Consensus 94 ~~~---------------~wP~~-p~-r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~---~~~~~lrl~~YP 153 (192)
.|| .||+. |+ |+++++|+++|.+|+..|+++++++||+++++|.+.+. .+.+.||+||||
T Consensus 82 ~d~kE~~~~~~~p~~~~~~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YP 161 (303)
T PLN02403 82 VDWESSFFIWHRPTSNINEIPNLSEDLRKTMDEYIAQLIKLAEKLSELMSENLGLDKDYIKEAFSGNKGPSVGTKVAKYP 161 (303)
T ss_pred ccHhhhcccccCCccchhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCCCccceeeeEcCC
Confidence 122 69977 88 99999999999999999999999999999999999886 334569999999
Q ss_pred CCCCCCCcccccccccCCceeEEEeCCCCCcceeeeCCC
Q 037110 154 TCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHKDK 192 (192)
Q Consensus 154 p~~~~~~~~g~~~HtD~g~lTlL~q~d~v~GLQV~~~G~ 192 (192)
||+.++..+|+++|||+|+||||+|+++++||||+++|+
T Consensus 162 ~~~~~~~~~G~~~HtD~g~lTlL~q~~~v~GLqV~~~g~ 200 (303)
T PLN02403 162 ECPRPELVRGLREHTDAGGIILLLQDDQVPGLEFLKDGK 200 (303)
T ss_pred CCCCcccccCccCccCCCeEEEEEecCCCCceEeccCCe
Confidence 999877788999999999999999933599999988774
No 22
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=6.1e-38 Score=268.41 Aligned_cols=156 Identities=22% Similarity=0.248 Sum_probs=129.1
Q ss_pred CCCceeECCCCCCCHHHHHHHHHHHHhchhHHH---------------hHHHHhcCCHHHHhhhhc-----CCccc----
Q 037110 33 LKLPVMDFSLASGDEDEQRKLDGACKESGFFQA---------------AVAAFCELHLDEKMKYAS-----GSYSL---- 88 (192)
Q Consensus 33 ~~iPvIDls~l~~d~~~~~~l~~A~~~~GFf~l---------------~~~~FF~lp~e~K~~~~~-----G~~~~---- 88 (192)
..||+|||+.. ....++++|++||++|||||| .+++||+||.|+|+++.. |+...
T Consensus 13 ~~iP~IDl~~~-~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~~~~~~GY~~~~~e~ 91 (332)
T PLN03002 13 SSLNCIDLAND-DLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLRNEKHRGYTPVLDEK 91 (332)
T ss_pred CCCCEEeCCch-hHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCCCcCcccccc
Confidence 37999999853 123688999999999999999 999999999999999865 43110
Q ss_pred ---cccccccc-------------------------cccCc---cc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHH
Q 037110 89 ---QIEARLCS-------------------------LRATK---AR-LGCSSTILGRIQRVAEEVLARLSLLMGMDKDGL 136 (192)
Q Consensus 89 ---~~~~~~~~-------------------------~wP~~---p~-r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f 136 (192)
......|| .||+. |+ |+++++|+++|.+|+.+|+++||++||+++++|
T Consensus 92 ~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f 171 (332)
T PLN03002 92 LDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAKLLALALDLDVGYF 171 (332)
T ss_pred cccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHh
Confidence 00000111 59974 67 999999999999999999999999999999999
Q ss_pred HH--HhcCcccceeeeecCCCCCCC-CcccccccccCCceeEEEeCCCCCcceeeeC
Q 037110 137 KM--LHREMKQAVRMNYYPTCSRPD-LVHGVSPHSDACTITFLLLDDEITALQIKHK 190 (192)
Q Consensus 137 ~~--~~~~~~~~lrl~~YPp~~~~~-~~~g~~~HtD~g~lTlL~q~d~v~GLQV~~~ 190 (192)
.+ .+..+.+.||+||||||+.++ ..+|+++|||+|+||||+| |+++||||+++
T Consensus 172 ~~~~~~~~~~~~lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~q-d~v~GLQV~~~ 227 (332)
T PLN03002 172 DRTEMLGKPIATMRLLRYQGISDPSKGIYACGAHSDFGMMTLLAT-DGVMGLQICKD 227 (332)
T ss_pred ccccccCCCchheeeeeCCCCCCcccCccccccccCCCeEEEEee-CCCCceEEecC
Confidence 86 445567889999999998665 4799999999999999999 88999999864
No 23
>PLN02485 oxidoreductase
Probab=100.00 E-value=1.1e-37 Score=266.55 Aligned_cols=159 Identities=26% Similarity=0.403 Sum_probs=130.6
Q ss_pred CCCceeECCCC-CC--C------H---HHHHHHHHHHHhchhHHH---------------hHHHHhcCCHHHHhhhhc--
Q 037110 33 LKLPVMDFSLA-SG--D------E---DEQRKLDGACKESGFFQA---------------AVAAFCELHLDEKMKYAS-- 83 (192)
Q Consensus 33 ~~iPvIDls~l-~~--d------~---~~~~~l~~A~~~~GFf~l---------------~~~~FF~lp~e~K~~~~~-- 83 (192)
..||||||+.+ ++ + + +++++|++||++|||||| .+++||+||.|+|+++..
T Consensus 6 ~~iPvIDl~~l~~~~~~~~~~~~~~~~~~~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~~~ 85 (329)
T PLN02485 6 KSIPVIDISPLVAKCDDPDMAEDPDVAEVVRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFFELPYEEKLKIKMTP 85 (329)
T ss_pred CCCCeEechhhhccCcccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhcccC
Confidence 37999999988 42 1 1 478999999999999999 999999999999999764
Q ss_pred -----CCccc-c-------cc--cc------------------c--cccccCc-cc-HHHHHHHHHHHHHHHHHHHHHHH
Q 037110 84 -----GSYSL-Q-------IE--AR------------------L--CSLRATK-AR-LGCSSTILGRIQRVAEEVLARLS 126 (192)
Q Consensus 84 -----G~~~~-~-------~~--~~------------------~--~~~wP~~-p~-r~~~~~y~~~~~~l~~~ll~~la 126 (192)
| |.. . .+ +. . .-.||+. ++ |+++++|+++|.+++.+|++++|
T Consensus 86 ~~~~rG-Y~~~g~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~~a 164 (329)
T PLN02485 86 AAGYRG-YQRIGENVTKGKPDMHEAIDCYREFKPGKYGDLGKVMEGPNQWPENPQEFKALMEEYIKLCTDLSRKILRGIA 164 (329)
T ss_pred CCCCCC-cccccccccCCCCCcchhhhhcccCCCCcccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 211 0 00 00 0 0179987 78 99999999999999999999999
Q ss_pred hhcCCChhHHHHHh-cCcccceeeeecCCCCC----CCCcccccccccCCceeEEEeCCCCCcceee-eCCC
Q 037110 127 LLMGMDKDGLKMLH-REMKQAVRMNYYPTCSR----PDLVHGVSPHSDACTITFLLLDDEITALQIK-HKDK 192 (192)
Q Consensus 127 ~~Lgl~~~~f~~~~-~~~~~~lrl~~YPp~~~----~~~~~g~~~HtD~g~lTlL~q~d~v~GLQV~-~~G~ 192 (192)
++||+++++|.+.+ .++.+.||++|||||+. ++..+|+++|||+|+||||+|+++++||||+ ++|+
T Consensus 165 ~~Lgl~~~~f~~~~~~~~~~~lrl~~YP~~~~~~~~~~~~~g~~~HTD~g~lTlL~qd~~~~GLqV~~~~g~ 236 (329)
T PLN02485 165 LALGGSPDEFEGKMAGDPFWVMRIIGYPGVSNLNGPPENDIGCGAHTDYGLLTLVNQDDDITALQVRNLSGE 236 (329)
T ss_pred HHcCCChHHhhhhhccCccceEEEEeCCCCccccCCcccCcccccccCCCeEEEEeccCCCCeeeEEcCCCc
Confidence 99999999998765 45677899999999985 4568999999999999999993368999998 4664
No 24
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.8e-37 Score=264.87 Aligned_cols=154 Identities=20% Similarity=0.344 Sum_probs=129.8
Q ss_pred CCCceeECCCCCCCHHHHHHHHHHHHhchhHHH---------------hHHHHhcCCHHHHhhhhc-----CCc------
Q 037110 33 LKLPVMDFSLASGDEDEQRKLDGACKESGFFQA---------------AVAAFCELHLDEKMKYAS-----GSY------ 86 (192)
Q Consensus 33 ~~iPvIDls~l~~d~~~~~~l~~A~~~~GFf~l---------------~~~~FF~lp~e~K~~~~~-----G~~------ 86 (192)
.+||+|||+.+ .+++|++||++|||||| .+++||+||.|+|+++.. |++
T Consensus 37 ~~IPvIDls~~-----~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~~FF~LP~eeK~k~~~~~~~~~~~~g~~~~ 111 (341)
T PLN02984 37 IDIPVIDMECL-----DMEKLREACKDWGIFRLENHGIPLTLMSQLKEISESLLSLPFESKRELFGVNSPLSYFWGTPAL 111 (341)
T ss_pred CCCCeEeCcHH-----HHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcccCCCCccccCcccc
Confidence 46999999865 46899999999999999 999999999999999751 211
Q ss_pred ccc-c-------cccccc---------------cccC---c-cc-HHHHHHHHHHHHHHHHHHHHHHHhhcCCC--hhHH
Q 037110 87 SLQ-I-------EARLCS---------------LRAT---K-AR-LGCSSTILGRIQRVAEEVLARLSLLMGMD--KDGL 136 (192)
Q Consensus 87 ~~~-~-------~~~~~~---------------~wP~---~-p~-r~~~~~y~~~~~~l~~~ll~~la~~Lgl~--~~~f 136 (192)
... . ....|| .||. . |+ |+++++|+++|.+|+.+|+++||++||++ +++|
T Consensus 112 ~~~~~~~~~~~~~~~~D~kE~f~~~~~~~~~~~~~p~~~~~~p~fr~~~~~y~~~~~~La~~ll~~lA~~Lgl~~~~~~f 191 (341)
T PLN02984 112 TPSGKALSRGPQESNVNWVEGFNIPLSSLSLLQTLSCSDPKLESFRVLMEEYGKHLTRIAVTLFEAIAKTLSLELSGDQK 191 (341)
T ss_pred cccccccccccccCCCCeeeEEeCcCCchhhhhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHH
Confidence 000 0 001233 2432 2 57 99999999999999999999999999999 9999
Q ss_pred HHHhcCcccceeeeecCCCCCCCCcccccccccCCceeEEEeCCCCCcceeeeCCC
Q 037110 137 KMLHREMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHKDK 192 (192)
Q Consensus 137 ~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q~d~v~GLQV~~~G~ 192 (192)
.+++..+.+.||++|||||+.++..+|+++|||+|+||||+| |+++||||+++|+
T Consensus 192 ~~~~~~~~~~lRl~~YPp~~~~~~~~g~~aHTD~g~lTlL~Q-d~v~GLQV~~~g~ 246 (341)
T PLN02984 192 MSYLSESTGVIRVYRYPQCSNEAEAPGMEVHTDSSVISILNQ-DEVGGLEVMKDGE 246 (341)
T ss_pred HHHhcCccceEEEEeCCCCCCcccccCccCccCCCceEEEEe-CCCCCeeEeeCCc
Confidence 999988888999999999998778899999999999999999 8999999998774
No 25
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=100.00 E-value=4.6e-36 Score=253.69 Aligned_cols=149 Identities=19% Similarity=0.272 Sum_probs=122.3
Q ss_pred CCCceeECCCCCCCHHHHHHHHHHHHhchhHHH---------------hHHHHhcCCHHHHhhhhc-----CCccccc--
Q 037110 33 LKLPVMDFSLASGDEDEQRKLDGACKESGFFQA---------------AVAAFCELHLDEKMKYAS-----GSYSLQI-- 90 (192)
Q Consensus 33 ~~iPvIDls~l~~d~~~~~~l~~A~~~~GFf~l---------------~~~~FF~lp~e~K~~~~~-----G~~~~~~-- 90 (192)
..||||||+.+ .+.+++|++||++|||||| .+++||+||.|+|+++.. |+.....
T Consensus 4 ~~iPvIDls~~---~~~~~~l~~Ac~~~GfF~l~nHGi~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~GY~~~~~~~ 80 (300)
T PLN02365 4 VNIPTIDLEEF---PGQIEKLREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFDLPDEVKRRNTDVILGSGYMAPSEVN 80 (300)
T ss_pred CCCCEEEChhh---HHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhccCCCCCCCCCCcCCCC
Confidence 47999999987 2346999999999999999 899999999999999643 3211100
Q ss_pred c--cccc--------c--cccC---c-cc-HHHHHHHHHHHHHHHHHHHHHHHhhcCC-ChhHHHHHhcCcccceeeeec
Q 037110 91 E--ARLC--------S--LRAT---K-AR-LGCSSTILGRIQRVAEEVLARLSLLMGM-DKDGLKMLHREMKQAVRMNYY 152 (192)
Q Consensus 91 ~--~~~~--------~--~wP~---~-p~-r~~~~~y~~~~~~l~~~ll~~la~~Lgl-~~~~f~~~~~~~~~~lrl~~Y 152 (192)
+ +... . .||. . |+ |+++++|+++|++|+.+|+++|+++||+ ++++|.+. .+.||+|||
T Consensus 81 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~f~~~----~~~lr~~~Y 156 (300)
T PLN02365 81 PLYEALGLYDMASPQAVDTFCSQLDASPHQRETIKKYAKAIHDLAMDLARKLAESLGLVEGDFFQGW----PSQFRINKY 156 (300)
T ss_pred CchhheecccccCchhhhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHhhc----ccceeeeec
Confidence 0 0000 0 2332 3 67 9999999999999999999999999999 88888764 468999999
Q ss_pred CCCCCCCCcccccccccCCceeEEEeCC-CCCcceeee
Q 037110 153 PTCSRPDLVHGVSPHSDACTITFLLLDD-EITALQIKH 189 (192)
Q Consensus 153 Pp~~~~~~~~g~~~HtD~g~lTlL~q~d-~v~GLQV~~ 189 (192)
|||+.++..+|+++|||+|+||||+| | +++||||++
T Consensus 157 P~~p~~~~~~g~~~HtD~g~lTlL~q-d~~~~GLqV~~ 193 (300)
T PLN02365 157 NFTPETVGSSGVQIHTDSGFLTILQD-DENVGGLEVMD 193 (300)
T ss_pred CCCCCccccccccCccCCCceEEEec-CCCcCceEEEE
Confidence 99998888899999999999999999 6 599999985
No 26
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.97 E-value=1.7e-30 Score=215.76 Aligned_cols=126 Identities=25% Similarity=0.405 Sum_probs=107.9
Q ss_pred hHHHHhc-CCHHHHhhhhc--CC-----ccc------cccccccc-----------------cccCc-cc-HHHHHHHHH
Q 037110 66 AVAAFCE-LHLDEKMKYAS--GS-----YSL------QIEARLCS-----------------LRATK-AR-LGCSSTILG 112 (192)
Q Consensus 66 ~~~~FF~-lp~e~K~~~~~--G~-----~~~------~~~~~~~~-----------------~wP~~-p~-r~~~~~y~~ 112 (192)
.+++||+ ||.|+|+++.. +. |.. ......+| .||+. |+ |+++++|++
T Consensus 4 ~~~~FF~~LP~eeK~~~~~~~~~~~~~GY~~~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~n~wP~~~~~f~~~~~~y~~ 83 (262)
T PLN03001 4 LGLSFFKDSPMEEKLRYACDPGSAASEGYGSRMLLGAKDDTVLDWRDFFDHHTFPLSRRNPSHWPDFPPDYREVVGEYGD 83 (262)
T ss_pred HHHHHHhhCCHHHHHHhhcCCCCCCccccccccccccCCCCccCchheeEeeecCccccchhhCCCCcHHHHHHHHHHHH
Confidence 4789997 99999999875 11 311 01112243 59987 78 999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCChhHHHHHhcCcccceeeeecCCCCCCCCcccccccccCCceeEEEeCCCCCcceeeeCCC
Q 037110 113 RIQRVAEEVLARLSLLMGMDKDGLKMLHREMKQAVRMNYYPTCSRPDLVHGVSPHSDACTITFLLLDDEITALQIKHKDK 192 (192)
Q Consensus 113 ~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q~d~v~GLQV~~~G~ 192 (192)
+|.+|+.+|+++++++||+++++|.+.+.+..+.||++|||||+.++..+|+++|||+|+||||+| |+++||||+++|+
T Consensus 84 ~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~q-d~v~GLqV~~~g~ 162 (262)
T PLN03001 84 CMKALAQKLLAFISESLGLPCSCIEDAVGDFYQNITVSYYPPCPQPELTLGLQSHSDFGAITLLIQ-DDVEGLQLLKDAE 162 (262)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcchhheeecCCCCCCcccccCCcCCcCCCeeEEEEe-CCCCceEEeeCCe
Confidence 999999999999999999999999999887778899999999998888999999999999999999 8899999997764
No 27
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=99.62 E-value=4.7e-16 Score=115.03 Aligned_cols=75 Identities=25% Similarity=0.457 Sum_probs=62.3
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCCCCceeECCCC-CCCH---HHHHHHHHHHHhchhHHH---------------hHH
Q 037110 8 PQSVPERYIQDQKDRPLDTEFYPASLKLPVMDFSLA-SGDE---DEQRKLDGACKESGFFQA---------------AVA 68 (192)
Q Consensus 8 ~~~vp~~~~~~~~~~~~~~~~~~~~~~iPvIDls~l-~~d~---~~~~~l~~A~~~~GFf~l---------------~~~ 68 (192)
..++|..|+++..++|..... ..+.+||||||+.+ ++++ +++++|++||++|||||| .++
T Consensus 12 ~~~~p~~~~~~~~~~p~~~~~-~~~~~iPvIDls~~~~~~~~~~~~~~~L~~A~~~~GFf~l~nhGi~~elid~~~~~~~ 90 (120)
T PLN03176 12 EKTLQASFVRDEDERPKVAYN-QFSNEIPVISIAGIDDGGEKRAEICNKIVEACEEWGVFQIVDHGVDAKLVSEMTTLAK 90 (120)
T ss_pred cCCCCHhhcCChhhCcCcccc-ccCCCCCeEECccccCCchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHH
Confidence 367999999999998743221 12247999999998 5543 478999999999999999 999
Q ss_pred HHhcCCHHHHhhhhc
Q 037110 69 AFCELHLDEKMKYAS 83 (192)
Q Consensus 69 ~FF~lp~e~K~~~~~ 83 (192)
+||+||.|+|+++..
T Consensus 91 ~FF~LP~e~K~k~~~ 105 (120)
T PLN03176 91 EFFALPPEEKLRFDM 105 (120)
T ss_pred HHHCCCHHHHHhccc
Confidence 999999999999876
No 28
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.42 E-value=3.4e-14 Score=103.71 Aligned_cols=49 Identities=43% Similarity=0.702 Sum_probs=42.0
Q ss_pred CceeECCCC-CCCHHHHHHHHHHHHhchhHHH---------------hHHHHhcCCHHHHhhhhc
Q 037110 35 LPVMDFSLA-SGDEDEQRKLDGACKESGFFQA---------------AVAAFCELHLDEKMKYAS 83 (192)
Q Consensus 35 iPvIDls~l-~~d~~~~~~l~~A~~~~GFf~l---------------~~~~FF~lp~e~K~~~~~ 83 (192)
||||||+.. ..+.+++++|++||++|||||| .+++||+||.|+|+++..
T Consensus 1 iPvIDls~~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~ 65 (116)
T PF14226_consen 1 IPVIDLSPDPADREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFALPLEEKQKYAR 65 (116)
T ss_dssp --EEEHGGCHHHHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCSHHHHHHHHBC
T ss_pred CCeEECCCCCccHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHhhHHHHHHhcC
Confidence 799999973 2335789999999999999999 999999999999999965
No 29
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=98.85 E-value=2.4e-09 Score=75.71 Aligned_cols=43 Identities=35% Similarity=0.699 Sum_probs=35.9
Q ss_pred cceeeeecCCCCCCCCcccccccccC--CceeEEEeCCCCCcceeeeCC
Q 037110 145 QAVRMNYYPTCSRPDLVHGVSPHSDA--CTITFLLLDDEITALQIKHKD 191 (192)
Q Consensus 145 ~~lrl~~YPp~~~~~~~~g~~~HtD~--g~lTlL~q~d~v~GLQV~~~G 191 (192)
+.||+++||| ++...|+++|+|. +++|+|+| ++++||||..++
T Consensus 2 ~~~~~~~Y~~---~~~~~~~~~H~D~~~~~~Til~~-~~~~gL~~~~~~ 46 (98)
T PF03171_consen 2 SQLRLNRYPP---PENGVGIGPHTDDEDGLLTILFQ-DEVGGLQVRDDG 46 (98)
T ss_dssp -EEEEEEE-S---CCGCEEEEEEEES--SSEEEEEE-TSTS-EEEEETT
T ss_pred CEEEEEECCC---cccCCceeCCCcCCCCeEEEEec-ccchheeccccc
Confidence 4699999998 5568899999999 99999999 899999998653
No 30
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=51.32 E-value=17 Score=22.21 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHhc
Q 037110 104 LGCSSTILGRIQRVAEEVLARLSLLMGMDKDGLKMLHR 141 (192)
Q Consensus 104 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~ 141 (192)
...++++|.........-...||..||++......+|.
T Consensus 12 ~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~ 49 (57)
T PF00046_consen 12 LKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQ 49 (57)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccccccccccccccccccCHH
Confidence 67889999988888999999999999999887777764
No 31
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=41.58 E-value=80 Score=23.98 Aligned_cols=53 Identities=25% Similarity=0.304 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhcCCChhHHHHHhcCcccceeeeecCCCCCCCCcccccccccCC--------ceeEEEeC
Q 037110 116 RVAEEVLARLSLLMGMDKDGLKMLHREMKQAVRMNYYPTCSRPDLVHGVSPHSDAC--------TITFLLLD 179 (192)
Q Consensus 116 ~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g--------~lTlL~q~ 179 (192)
.+...|.+.++..++++.. .......+++++|.+- -...+|.|.. .+|+++..
T Consensus 59 ~~~~~l~~~i~~~~~~~~~-----~~~~~~~~~~~~Y~~g------~~~~~H~D~~~~~~~~~r~~T~~~yL 119 (178)
T smart00702 59 LVIERIRQRLADFLGLLRG-----LPLSAEDAQVARYGPG------GHYGPHVDNFEDDENGDRIATFLLYL 119 (178)
T ss_pred HHHHHHHHHHHHHHCCCch-----hhccCcceEEEEECCC------CcccCcCCCCCCCCCCCeEEEEEEEe
Confidence 3455566666666666422 1123345889999862 2367899976 68888763
No 32
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=39.52 E-value=18 Score=24.66 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=19.9
Q ss_pred eeeeecCCCCCCCCcccccccccC-----CceeEEEeCC
Q 037110 147 VRMNYYPTCSRPDLVHGVSPHSDA-----CTITFLLLDD 180 (192)
Q Consensus 147 lrl~~YPp~~~~~~~~g~~~HtD~-----g~lTlL~q~d 180 (192)
|++++|++ .-.+++|+|. ..+|+|+..+
T Consensus 1 ~~~~~y~~------G~~~~~H~D~~~~~~~~~t~llyL~ 33 (100)
T PF13640_consen 1 MQLNRYPP------GGFFGPHTDNSYDPHRRVTLLLYLN 33 (100)
T ss_dssp -EEEEEET------TEEEEEEESSSCCCSEEEEEEEESS
T ss_pred CEEEEECc------CCEEeeeECCCCCCcceEEEEEEEC
Confidence 57888865 2357899999 6899996533
No 33
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=38.23 E-value=2.5e+02 Score=23.81 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=26.2
Q ss_pred CCceeECCCCCCCHHHHHHHHHHHHhchhHHH
Q 037110 34 KLPVMDFSLASGDEDEQRKLDGACKESGFFQA 65 (192)
Q Consensus 34 ~iPvIDls~l~~d~~~~~~l~~A~~~~GFf~l 65 (192)
.--+||+|.. +|+..+++.++.++.|+.+|
T Consensus 88 G~i~IDmSTi--sp~~a~~~a~~~~~~G~~~l 117 (286)
T COG2084 88 GAIVIDMSTI--SPETARELAAALAAKGLEFL 117 (286)
T ss_pred CCEEEECCCC--CHHHHHHHHHHHHhcCCcEE
Confidence 4568999975 68899999999999999988
No 34
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=37.04 E-value=15 Score=23.37 Aligned_cols=39 Identities=8% Similarity=0.083 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHhhcCCChhHHHHHhcC
Q 037110 104 LGCSSTILGRIQR----VAEEVLARLSLLMGMDKDGLKMLHRE 142 (192)
Q Consensus 104 r~~~~~y~~~~~~----l~~~ll~~la~~Lgl~~~~f~~~~~~ 142 (192)
.+.|+++++...- ........||..|||++..+.-+|.+
T Consensus 13 ~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN 55 (58)
T TIGR01565 13 KEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHN 55 (58)
T ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeeccc
Confidence 6778888887765 88888899999999998876655543
No 35
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=36.87 E-value=38 Score=20.42 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHhc
Q 037110 104 LGCSSTILGRIQRVAEEVLARLSLLMGMDKDGLKMLHR 141 (192)
Q Consensus 104 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~ 141 (192)
...++++|.........-...||..+|++...+..+|.
T Consensus 12 ~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~ 49 (59)
T cd00086 12 LEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQ 49 (59)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 77889999998888999999999999999887777774
No 36
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=32.91 E-value=64 Score=20.25 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhH
Q 037110 112 GRIQRVAEEVLARLSLLMGMDKDG 135 (192)
Q Consensus 112 ~~~~~l~~~ll~~la~~Lgl~~~~ 135 (192)
+.-++|...|.+++++.||++++.
T Consensus 15 eqk~~l~~~it~~l~~~lg~p~~~ 38 (64)
T PRK01964 15 EKIKNLIREVTEAISATLDVPKER 38 (64)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhh
Confidence 345688889999999999999753
No 37
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=30.47 E-value=20 Score=29.55 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhchhHHH-hHHHHhcCCHHHHhhhhc
Q 037110 49 EQRKLDGACKESGFFQA-AVAAFCELHLDEKMKYAS 83 (192)
Q Consensus 49 ~~~~l~~A~~~~GFf~l-~~~~FF~lp~e~K~~~~~ 83 (192)
..++..+.|++.||=.| .+..|.++|.++|.++..
T Consensus 72 ~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~ 107 (237)
T TIGR03849 72 KFDEYLNECDELGFEAVEISDGSMEISLEERCNLIE 107 (237)
T ss_pred hHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHH
Confidence 45667778999999888 999999999999988765
No 38
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=29.75 E-value=77 Score=19.47 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhH
Q 037110 112 GRIQRVAEEVLARLSLLMGMDKDG 135 (192)
Q Consensus 112 ~~~~~l~~~ll~~la~~Lgl~~~~ 135 (192)
++-.+|+..|..++++.||.+++.
T Consensus 14 e~K~~l~~~it~~~~~~lg~~~~~ 37 (60)
T PF01361_consen 14 EQKRELAEAITDAVVEVLGIPPER 37 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGG
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCe
Confidence 345678889999999999998763
No 39
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=29.26 E-value=85 Score=19.28 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhH
Q 037110 112 GRIQRVAEEVLARLSLLMGMDKDG 135 (192)
Q Consensus 112 ~~~~~l~~~ll~~la~~Lgl~~~~ 135 (192)
++-++|...|.+++++.+|++++.
T Consensus 15 eqk~~l~~~it~~l~~~~~~p~~~ 38 (61)
T PRK02220 15 EQLKALVKDVTAAVSKNTGAPAEH 38 (61)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhh
Confidence 345688889999999999998653
No 40
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=27.93 E-value=51 Score=19.18 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=13.8
Q ss_pred ccCCceeEEEeCCCCCcceeee
Q 037110 168 SDACTITFLLLDDEITALQIKH 189 (192)
Q Consensus 168 tD~g~lTlL~q~d~v~GLQV~~ 189 (192)
-.||.+||..| |+. =.||.+
T Consensus 13 i~yGsV~iiiq-dG~-vvQIe~ 32 (38)
T PF10055_consen 13 IRYGSVTIIIQ-DGR-VVQIEK 32 (38)
T ss_pred CCcceEEEEEE-CCE-EEEEEh
Confidence 46899999999 642 245543
No 41
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=27.92 E-value=81 Score=19.47 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCChh
Q 037110 112 GRIQRVAEEVLARLSLLMGMDKD 134 (192)
Q Consensus 112 ~~~~~l~~~ll~~la~~Lgl~~~ 134 (192)
++-.+|+..|.++++..||.+++
T Consensus 15 eqK~~l~~~it~~l~~~lg~~~~ 37 (63)
T TIGR00013 15 EQKRQLIEGVTEAMAETLGANLE 37 (63)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcc
Confidence 34567888999999999999865
No 42
>COG1741 Pirin-related protein [General function prediction only]
Probab=26.67 E-value=92 Score=26.27 Aligned_cols=19 Identities=26% Similarity=0.266 Sum_probs=16.3
Q ss_pred CcccccccccCCceeEEEe
Q 037110 160 LVHGVSPHSDACTITFLLL 178 (192)
Q Consensus 160 ~~~g~~~HtD~g~lTlL~q 178 (192)
..++-.||.|+.++|.+++
T Consensus 55 ~~f~pHPHrg~etvTyvl~ 73 (276)
T COG1741 55 RGFPPHPHRGLETVTYVLD 73 (276)
T ss_pred CcCCCCCCCCcEEEEEEEc
Confidence 3477789999999999996
No 43
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=26.37 E-value=90 Score=18.81 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCChh
Q 037110 112 GRIQRVAEEVLARLSLLMGMDKD 134 (192)
Q Consensus 112 ~~~~~l~~~ll~~la~~Lgl~~~ 134 (192)
++-++++..|.+++++.+|.+++
T Consensus 14 eqk~~l~~~i~~~l~~~~g~~~~ 36 (58)
T cd00491 14 EQKRELIERVTEAVSEILGAPEA 36 (58)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcc
Confidence 45578889999999999999865
No 44
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=26.31 E-value=44 Score=28.47 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=17.4
Q ss_pred CcccccccccCCceeEEEeCCCCCcceee
Q 037110 160 LVHGVSPHSDACTITFLLLDDEITALQIK 188 (192)
Q Consensus 160 ~~~g~~~HtD~g~lTlL~q~d~v~GLQV~ 188 (192)
..+-+++|||-+- | ++.+|+||.
T Consensus 185 tkl~lg~HTD~TY----F--~~~~GiQvf 207 (371)
T KOG3889|consen 185 TKLELGPHTDGTY----F--DQTPGIQVF 207 (371)
T ss_pred eeeeecccCCCce----e--ccCCCceEE
Confidence 3567899999654 3 357999997
No 45
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=25.88 E-value=21 Score=21.45 Aligned_cols=16 Identities=13% Similarity=0.399 Sum_probs=6.6
Q ss_pred HHhhcCCChhHHHHHh
Q 037110 125 LSLLMGMDKDGLKMLH 140 (192)
Q Consensus 125 la~~Lgl~~~~f~~~~ 140 (192)
+|+.+|++...+.++.
T Consensus 15 la~~~gis~~~i~~~~ 30 (55)
T PF01381_consen 15 LAEKLGISRSTISRIE 30 (55)
T ss_dssp HHHHHTS-HHHHHHHH
T ss_pred HHHHhCCCcchhHHHh
Confidence 4444444444444443
No 46
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=25.70 E-value=1.1e+02 Score=18.76 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhH
Q 037110 112 GRIQRVAEEVLARLSLLMGMDKDG 135 (192)
Q Consensus 112 ~~~~~l~~~ll~~la~~Lgl~~~~ 135 (192)
+.-.+|+..|.+++++.+|.+++.
T Consensus 15 eqk~~l~~~it~~l~~~~~~p~~~ 38 (62)
T PRK00745 15 EQKRKLVEEITRVTVETLGCPPES 38 (62)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhH
Confidence 345678899999999999998754
No 47
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=25.58 E-value=1.1e+02 Score=25.00 Aligned_cols=15 Identities=7% Similarity=0.113 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhch
Q 037110 47 EDEQRKLDGACKESG 61 (192)
Q Consensus 47 ~~~~~~l~~A~~~~G 61 (192)
+++++++++.+...|
T Consensus 11 ~eec~~~~~~le~~~ 25 (226)
T PRK05467 11 PEEVAQIRELLDAAE 25 (226)
T ss_pred HHHHHHHHHHHHhcC
Confidence 566777777766655
No 48
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=25.03 E-value=59 Score=19.41 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChhHHHHHhc
Q 037110 104 LGCSSTILGRIQRVAEEVLARLSLLMGMDKDGLKMLHR 141 (192)
Q Consensus 104 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~ 141 (192)
...++.++.........-...||..+|++..-...+|.
T Consensus 12 ~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~ 49 (56)
T smart00389 12 LEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQ 49 (56)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHH
Confidence 67788888888888888889999999999877777664
No 49
>TIGR00030 S21p ribosomal protein S21. This model describes bacterial ribosomal protein S21 and most mitochondrial and chloroplast equivalents.
Probab=24.95 E-value=1.9e+02 Score=18.29 Aligned_cols=33 Identities=9% Similarity=0.264 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhchhHHH-hHHHHhcCCHHHHhh
Q 037110 48 DEQRKLDGACKESGFFQA-AVAAFCELHLDEKMK 80 (192)
Q Consensus 48 ~~~~~l~~A~~~~GFf~l-~~~~FF~lp~e~K~~ 80 (192)
..++.+...|..-|.+.- -.++||.-|.+.+.+
T Consensus 13 ~alrrfkr~~~~~gil~e~r~r~~yeKPs~krkr 46 (58)
T TIGR00030 13 SALRRFKRKLEKEGILRELKKRRYYEKPSERRRR 46 (58)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHhhcCHHHHHHH
Confidence 678999999999999998 778999999887643
No 50
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=24.90 E-value=27 Score=28.95 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhchhHHH-hHHHHhcCCHHHHhhhhc
Q 037110 49 EQRKLDGACKESGFFQA-AVAAFCELHLDEKMKYAS 83 (192)
Q Consensus 49 ~~~~l~~A~~~~GFf~l-~~~~FF~lp~e~K~~~~~ 83 (192)
..++..+.|++.||=.| .+..+.++|.++|.++..
T Consensus 85 ~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~ 120 (244)
T PF02679_consen 85 KFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIR 120 (244)
T ss_dssp -HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHH
Confidence 36778888888888888 999999999999988765
No 51
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=24.29 E-value=98 Score=19.22 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCChhH
Q 037110 112 GRIQRVAEEVLARLSLLMGMDKDG 135 (192)
Q Consensus 112 ~~~~~l~~~ll~~la~~Lgl~~~~ 135 (192)
+.-++|+..|.+++++.+|.+++.
T Consensus 15 EqK~~L~~~it~a~~~~~~~p~~~ 38 (60)
T PRK02289 15 EQKNALAREVTEVVSRIAKAPKEA 38 (60)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcce
Confidence 345678899999999999998654
No 52
>KOG1742 consensus 60s ribosomal protein L15/L27 [Translation, ribosomal structure and biogenesis]
Probab=24.06 E-value=22 Score=26.84 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=13.1
Q ss_pred hHHHHhcCCHHHHhhhh
Q 037110 66 AVAAFCELHLDEKMKYA 82 (192)
Q Consensus 66 ~~~~FF~lp~e~K~~~~ 82 (192)
+-.+||+.+.|+|.+-.
T Consensus 123 VKak~~s~~AeekIk~~ 139 (147)
T KOG1742|consen 123 VKAKYFSRRAEEKIKKA 139 (147)
T ss_pred EeccccCccchHHHHhc
Confidence 66788888888887644
No 53
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=22.33 E-value=63 Score=19.93 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=17.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhhcCCChhH
Q 037110 104 LGCSSTILGRI-QRVAEEVLARLSLLMGMDKDG 135 (192)
Q Consensus 104 r~~~~~y~~~~-~~l~~~ll~~la~~Lgl~~~~ 135 (192)
+.++..+...= ..+....+..||.+||++.+.
T Consensus 24 ~~tl~~~~~~~~~~~~~~~l~~ia~~l~~~~~e 56 (63)
T PF13443_consen 24 RSTLSRILNGKPSNPSLDTLEKIAKALNCSPEE 56 (63)
T ss_dssp HHHHHHHHTTT-----HHHHHHHHHHHT--HHH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHcCCCHHH
Confidence 45566665543 567777788888888877654
No 54
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=21.91 E-value=1e+02 Score=21.84 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhhcCCChhH
Q 037110 113 RIQRVAEEVLARLSLLMGMDKDG 135 (192)
Q Consensus 113 ~~~~l~~~ll~~la~~Lgl~~~~ 135 (192)
.-.+++..|.+.+++.||++++.
T Consensus 73 ~k~~l~~~i~~~l~~~lgi~~~r 95 (116)
T PTZ00397 73 NNSSIAAAITKILASHLKVKSER 95 (116)
T ss_pred HHHHHHHHHHHHHHHHhCcCccc
Confidence 34567778888999999999863
No 55
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=20.45 E-value=98 Score=18.53 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhchhH
Q 037110 47 EDEQRKLDGACKESGFF 63 (192)
Q Consensus 47 ~~~~~~l~~A~~~~GFf 63 (192)
++..++|.+++++.||-
T Consensus 28 ~~tr~rI~~~a~~lgY~ 44 (46)
T PF00356_consen 28 EETRERILEAAEELGYR 44 (46)
T ss_dssp HHHHHHHHHHHHHHTB-
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 57899999999999983
Done!