BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037115
(572 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AEZ|C Chain C, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|F Chain F, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|I Chain I, Crystal Structure Of Mitotic Checkpoint Complex
Length = 223
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 1/129 (0%)
Query: 26 DPLLPWLQGIK-KMXXXXXXXXXXXXXXRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDF 84
DPL W+ IK + L++C + F + Y++D+RYLRIW+ +++
Sbjct: 70 DPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY 129
Query: 85 VDDPRVMLRTMEVNHIGTKRSLFYQANALXXXXXXXXXXXXXXXHLGVQNLAEPADELQK 144
+D+P + + +HIG + S+FY+ A G + A+P Q+
Sbjct: 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQ 189
Query: 145 SYEQFLHRM 153
Y+QF HR
Sbjct: 190 KYQQFTHRW 198
>pdb|3SI5|A Chain A, Kinetochore-Bubr1 Kinase Complex
pdb|3SI5|B Chain B, Kinetochore-Bubr1 Kinase Complex
Length = 176
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 57/139 (41%)
Query: 18 DIKSYSGTDPLLPWLQGIKKMXXXXXXXXXXXXXXRFLQKCAQTFESDRRYRNDMRYLRI 77
+I+ Y+G DPL W + I L++ + + ++RY +D R+L +
Sbjct: 21 EIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNL 80
Query: 78 WLHLMDFVDDPRVMLRTMEVNHIGTKRSLFYQANALXXXXXXXXXXXXXXXHLGVQNLAE 137
WL L ++P M + IG + FY + A G+Q AE
Sbjct: 81 WLKLGRLCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 140
Query: 138 PADELQKSYEQFLHRMERH 156
P + LQ + QF R+ R
Sbjct: 141 PLERLQSQHRQFQARVSRQ 159
>pdb|2WVI|A Chain A, Crystal Structure Of The N-Terminal Domain Of Bubr1
Length = 164
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 57/139 (41%)
Query: 18 DIKSYSGTDPLLPWLQGIKKMXXXXXXXXXXXXXXRFLQKCAQTFESDRRYRNDMRYLRI 77
+I+ Y+G DPL W + I L++ + + ++RY +D R+L +
Sbjct: 9 EIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNL 68
Query: 78 WLHLMDFVDDPRVMLRTMEVNHIGTKRSLFYQANALXXXXXXXXXXXXXXXHLGVQNLAE 137
WL L ++P M + IG + FY + A G+Q AE
Sbjct: 69 WLKLGRLCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128
Query: 138 PADELQKSYEQFLHRMERH 156
P + LQ + QF R+ R
Sbjct: 129 PLERLQSQHRQFQARVSRQ 147
>pdb|4A1G|A Chain A, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
pdb|4A1G|B Chain B, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
pdb|4A1G|C Chain C, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
pdb|4A1G|D Chain D, The Crystal Structure Of The Human Bub1 Tpr Domain In
Complex With The Ki Motif Of Knl1
Length = 152
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 2/135 (1%)
Query: 19 IKSYSGTDPLLPWLQGIKKMXXXXXXXXXXXXXXRFLQKCAQTFESDRRYRNDMRYLRIW 78
++SY G DPL W + I+ + L+ + F ++Y ND R++
Sbjct: 17 MQSYKGNDPLGEWERYIQWVEENFPENKEYLIT--LLEHLMKEFLDKKKYHNDPRFISYC 74
Query: 79 LHLMDFVDDPRVMLRTMEVNHIGTKRSLFYQANALXXXXXXXXXXXXXXXHLGVQNLAEP 138
L ++ D + + IGT S Y A A G+QN AEP
Sbjct: 75 LKFAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134
Query: 139 ADELQKSYEQFLHRM 153
+ LQ+ Y F R+
Sbjct: 135 REFLQQQYRLFQTRL 149
>pdb|2LAH|A Chain A, Solution Nmr Structure Of Mitotic Checkpoint
SerineTHREONINE-Protein Kinase Bub1 N-Terminal Domain
From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr5460a (Methods Development)
Length = 160
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 2/135 (1%)
Query: 19 IKSYSGTDPLLPWLQGIKKMXXXXXXXXXXXXXXRFLQKCAQTFESDRRYRNDMRYLRIW 78
++SY G DPL W + I+ + L+ + F ++Y ND R++
Sbjct: 25 MQSYKGNDPLGEWERYIQWVEENFPENKEYLIT--LLEHLMKEFLDKKKYHNDPRFISYC 82
Query: 79 LHLMDFVDDPRVMLRTMEVNHIGTKRSLFYQANALXXXXXXXXXXXXXXXHLGVQNLAEP 138
L ++ D + + IGT S Y A A G+QN AEP
Sbjct: 83 LKFAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 142
Query: 139 ADELQKSYEQFLHRM 153
+ LQ+ Y F R+
Sbjct: 143 REFLQQQYRLFQTRL 157
>pdb|3ESL|A Chain A, Crystal Structure Of The Conserved N-Terminal Domain Of
The Mitotic Checkpoint Component Bub1
pdb|3ESL|B Chain B, Crystal Structure Of The Conserved N-Terminal Domain Of
The Mitotic Checkpoint Component Bub1
Length = 202
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 8/134 (5%)
Query: 55 LQKCAQTFESDRRYRNDMRYLRIWLHLMDF-----VDDPRVMLRTMEVNHIGTKRSLFYQ 109
+++C + YRND R+L+IW+ ++ + + M IGTK SLFY+
Sbjct: 60 MERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYE 119
Query: 110 ANALXXXXXXXXXXXXXXXHLGVQNLAEPADELQKSYEQFLHRMERHNKKRIQQQ---ER 166
+ LG +N P + L +S + R+ N Q R
Sbjct: 120 EFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSNYEDRLREMNIVENQNSVPDSR 179
Query: 167 KTSRKPLSARSIPF 180
+ + L R+ PF
Sbjct: 180 ERLKGRLIYRTAPF 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,490,232
Number of Sequences: 62578
Number of extensions: 595557
Number of successful extensions: 931
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 919
Number of HSP's gapped (non-prelim): 12
length of query: 572
length of database: 14,973,337
effective HSP length: 104
effective length of query: 468
effective length of database: 8,465,225
effective search space: 3961725300
effective search space used: 3961725300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)