Query 037115
Match_columns 572
No_of_seqs 140 out of 268
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 08:49:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00777 Mad3_BUB1_I Mad3/BU 100.0 1.1E-45 2.4E-50 332.8 13.5 122 10-131 3-125 (125)
2 PF08311 Mad3_BUB1_I: Mad3/BUB 100.0 6.3E-43 1.4E-47 312.0 13.7 124 9-132 2-126 (126)
3 KOG1166 Mitotic checkpoint ser 100.0 1.1E-39 2.4E-44 367.1 21.9 447 3-572 9-489 (974)
4 PF15297 CKAP2_C: Cytoskeleton 96.3 0.019 4.1E-07 61.1 9.4 74 78-151 109-186 (353)
5 KOG1915 Cell cycle control pro 95.3 0.12 2.5E-06 57.8 10.4 124 25-155 317-452 (677)
6 KOG2047 mRNA splicing factor [ 95.1 0.17 3.7E-06 58.0 11.4 143 12-159 122-304 (835)
7 PF05843 Suf: Suppressor of fo 94.9 0.077 1.7E-06 53.4 7.4 110 30-154 3-121 (280)
8 KOG1915 Cell cycle control pro 94.4 0.21 4.5E-06 55.9 9.5 123 14-155 61-189 (677)
9 PF05843 Suf: Suppressor of fo 94.2 0.23 5E-06 50.1 8.7 88 52-154 56-151 (280)
10 KOG1914 mRNA cleavage and poly 92.7 1.2 2.6E-05 50.6 11.8 102 50-161 71-193 (656)
11 COG5107 RNA14 Pre-mRNA 3'-end 91.8 0.8 1.7E-05 51.3 9.1 99 53-161 97-217 (660)
12 KOG2047 mRNA splicing factor [ 91.3 0.26 5.6E-06 56.6 5.0 86 52-139 445-545 (835)
13 KOG1070 rRNA processing protei 91.3 1.2 2.7E-05 54.8 10.6 119 25-155 1455-1579(1710)
14 PF02631 RecX: RecX family; I 90.1 2 4.3E-05 38.2 8.5 92 54-152 10-104 (121)
15 PF08424 NRDE-2: NRDE-2, neces 89.0 5.6 0.00012 41.2 12.1 115 6-135 45-184 (321)
16 KOG1258 mRNA processing protei 88.5 3.9 8.4E-05 46.6 11.2 125 14-152 277-412 (577)
17 PRK14136 recX recombination re 87.5 4.6 0.0001 42.9 10.3 76 53-133 194-269 (309)
18 KOG2396 HAT (Half-A-TPR) repea 86.6 4.8 0.00011 45.5 10.3 131 13-157 38-191 (568)
19 KOG1166 Mitotic checkpoint ser 84.6 7.5 0.00016 46.9 11.3 121 21-155 8-129 (974)
20 KOG0495 HAT repeat protein [RN 82.5 3.1 6.8E-05 48.4 6.9 112 8-137 634-751 (913)
21 PF13429 TPR_15: Tetratricopep 82.1 2.9 6.3E-05 41.0 5.8 80 70-150 108-190 (280)
22 KOG1070 rRNA processing protei 82.0 15 0.00032 46.2 12.3 133 5-155 1471-1608(1710)
23 PF07719 TPR_2: Tetratricopept 81.0 3.9 8.6E-05 27.5 4.5 30 105-134 1-30 (34)
24 KOG1914 mRNA cleavage and poly 80.9 7.7 0.00017 44.4 9.1 121 28-158 237-384 (656)
25 smart00745 MIT Microtubule Int 80.3 9.3 0.0002 31.3 7.3 54 103-156 6-68 (77)
26 PF13428 TPR_14: Tetratricopep 78.6 3.5 7.6E-05 30.4 3.9 31 107-137 3-33 (44)
27 smart00028 TPR Tetratricopepti 77.2 3.9 8.5E-05 24.6 3.3 29 106-134 2-30 (34)
28 PRK14134 recX recombination re 75.4 20 0.00043 37.2 9.5 97 52-152 92-191 (283)
29 cd02683 MIT_1 MIT: domain cont 75.3 21 0.00045 30.5 8.1 55 102-156 3-66 (77)
30 PF13181 TPR_8: Tetratricopept 75.3 7.1 0.00015 26.5 4.4 30 105-134 1-30 (34)
31 PF08424 NRDE-2: NRDE-2, neces 75.0 9.6 0.00021 39.5 7.3 90 8-100 81-185 (321)
32 PRK15179 Vi polysaccharide bio 74.6 65 0.0014 37.6 14.3 94 49-144 134-227 (694)
33 PF12895 Apc3: Anaphase-promot 73.1 14 0.0003 30.1 6.4 72 52-130 9-83 (84)
34 PRK11189 lipoprotein NlpI; Pro 70.8 94 0.002 31.5 13.0 55 99-155 230-284 (296)
35 cd02682 MIT_AAA_Arch MIT: doma 69.8 21 0.00045 30.9 6.9 56 103-161 4-64 (75)
36 PRK14135 recX recombination re 69.7 37 0.00081 33.9 9.8 56 52-108 88-145 (263)
37 PRK00117 recX recombination re 68.8 47 0.001 30.7 9.6 54 52-106 42-96 (157)
38 TIGR02521 type_IV_pilW type IV 68.3 85 0.0019 27.7 11.6 52 86-137 116-167 (234)
39 PF13414 TPR_11: TPR repeat; P 66.5 9.4 0.0002 29.4 3.9 32 104-135 2-33 (69)
40 cd02656 MIT MIT: domain contai 65.5 34 0.00073 28.1 7.2 44 103-146 4-52 (75)
41 PF13176 TPR_7: Tetratricopept 65.3 12 0.00026 26.7 4.0 25 108-132 2-26 (36)
42 TIGR02795 tol_pal_ybgF tol-pal 65.2 63 0.0014 26.4 8.8 85 52-137 22-108 (119)
43 PF04212 MIT: MIT (microtubule 64.3 34 0.00073 27.7 6.9 32 103-134 3-34 (69)
44 PF13432 TPR_16: Tetratricopep 61.7 34 0.00073 26.2 6.2 48 85-134 13-60 (65)
45 TIGR00990 3a0801s09 mitochondr 61.6 1.5E+02 0.0032 33.1 13.3 58 87-147 526-583 (615)
46 PF03704 BTAD: Bacterial trans 61.3 77 0.0017 28.1 9.2 115 7-149 21-145 (146)
47 KOG1840 Kinesin light chain [C 60.9 29 0.00063 39.2 7.8 52 96-147 357-420 (508)
48 cd00189 TPR Tetratricopeptide 59.4 64 0.0014 23.2 7.7 47 86-134 51-97 (100)
49 TIGR00540 hemY_coli hemY prote 59.2 1E+02 0.0022 32.6 11.2 23 110-132 375-397 (409)
50 PF13374 TPR_10: Tetratricopep 57.9 25 0.00055 24.2 4.5 30 105-134 2-31 (42)
51 PF13371 TPR_9: Tetratricopept 56.8 52 0.0011 25.5 6.5 53 88-142 14-66 (73)
52 cd02681 MIT_calpain7_1 MIT: do 56.6 44 0.00096 28.7 6.5 31 104-134 5-35 (76)
53 PF00515 TPR_1: Tetratricopept 56.4 29 0.00063 23.6 4.5 31 105-135 1-31 (34)
54 smart00299 CLH Clathrin heavy 55.8 31 0.00068 30.5 5.7 25 107-131 84-108 (140)
55 smart00386 HAT HAT (Half-A-TPR 53.9 23 0.00051 22.9 3.6 32 119-151 1-32 (33)
56 PRK14137 recX recombination re 52.0 96 0.0021 30.9 9.0 93 53-152 72-164 (195)
57 PF13424 TPR_12: Tetratricopep 52.0 30 0.00066 27.3 4.6 32 103-134 3-34 (78)
58 cd02678 MIT_VPS4 MIT: domain c 51.6 72 0.0016 26.6 6.9 32 103-134 4-35 (75)
59 KOG0128 RNA-binding protein SA 51.1 3.2E+02 0.0068 33.4 14.1 140 6-151 396-545 (881)
60 PRK15179 Vi polysaccharide bio 51.0 76 0.0016 37.1 9.2 80 51-141 105-190 (694)
61 KOG3617 WD40 and TPR repeat-co 50.1 40 0.00087 40.9 6.8 28 106-133 913-940 (1416)
62 PF09976 TPR_21: Tetratricopep 50.0 95 0.0021 27.9 8.0 46 87-132 100-145 (145)
63 KOG1258 mRNA processing protei 49.4 83 0.0018 36.4 9.0 95 49-155 96-198 (577)
64 PLN03088 SGT1, suppressor of 49.3 1.6E+02 0.0035 31.0 10.7 49 86-136 53-101 (356)
65 TIGR02917 PEP_TPR_lipo putativ 47.2 97 0.0021 33.6 8.8 64 73-138 667-736 (899)
66 PF08631 SPO22: Meiosis protei 46.9 2.7E+02 0.0059 28.2 11.5 123 6-133 135-274 (278)
67 cd02684 MIT_2 MIT: domain cont 44.8 84 0.0018 26.7 6.3 52 105-156 6-66 (75)
68 PF12688 TPR_5: Tetratrico pep 43.8 76 0.0016 29.1 6.4 63 87-151 19-82 (120)
69 PF13424 TPR_12: Tetratricopep 42.7 1.2E+02 0.0026 23.9 6.7 31 103-133 44-74 (78)
70 PRK14720 transcript cleavage f 42.7 1.6E+02 0.0035 35.9 10.4 82 52-136 169-254 (906)
71 PF13429 TPR_15: Tetratricopep 42.1 1.1E+02 0.0023 30.1 7.6 112 28-152 146-260 (280)
72 KOG2376 Signal recognition par 41.9 1.8E+02 0.004 34.1 10.2 130 1-142 1-147 (652)
73 PF13174 TPR_6: Tetratricopept 41.6 38 0.00082 22.3 3.1 28 105-134 2-29 (33)
74 PF05596 Taeniidae_ag: Taeniid 41.1 49 0.0011 28.0 4.3 45 90-134 18-63 (64)
75 TIGR03302 OM_YfiO outer membra 40.2 3.3E+02 0.0071 25.8 10.4 84 52-136 90-197 (235)
76 TIGR02552 LcrH_SycD type III s 39.4 2.4E+02 0.0053 24.0 9.8 48 86-135 68-115 (135)
77 PRK15359 type III secretion sy 38.1 3.1E+02 0.0068 24.9 9.8 46 87-134 76-121 (144)
78 TIGR02552 LcrH_SycD type III s 38.0 2.6E+02 0.0056 23.9 8.9 64 72-137 19-83 (135)
79 PRK12370 invasion protein regu 37.7 2.9E+02 0.0062 30.8 10.8 135 7-152 353-488 (553)
80 PRK02603 photosystem I assembl 37.6 1.7E+02 0.0036 27.0 7.7 33 104-136 71-103 (172)
81 COG5191 Uncharacterized conser 37.1 36 0.00079 37.3 3.7 128 13-154 38-190 (435)
82 PRK09857 putative transposase; 36.2 1.9E+02 0.004 30.3 8.6 79 50-133 187-268 (292)
83 KOG0307 Vesicle coat complex C 35.4 2.3E+02 0.005 35.2 10.1 61 68-129 614-689 (1049)
84 COG2137 OraA Uncharacterized p 35.2 2.9E+02 0.0062 27.3 9.2 90 51-151 54-148 (174)
85 PRK15359 type III secretion sy 35.2 3.5E+02 0.0076 24.6 10.6 52 84-137 39-90 (144)
86 KOG2076 RNA polymerase III tra 34.7 2.3E+02 0.005 34.5 9.9 129 9-160 666-796 (895)
87 PRK11788 tetratricopeptide rep 33.6 2.5E+02 0.0055 28.3 8.9 96 55-152 123-227 (389)
88 smart00148 PLCXc Phospholipase 32.9 36 0.00077 31.4 2.5 49 274-322 42-92 (135)
89 PF02330 MAM33: Mitochondrial 32.7 59 0.0013 31.7 4.1 30 90-119 163-192 (204)
90 cd02679 MIT_spastin MIT: domai 32.6 67 0.0014 28.0 4.0 33 102-134 5-37 (79)
91 PRK11447 cellulose synthase su 32.4 3.3E+02 0.0072 33.2 11.0 53 85-139 367-419 (1157)
92 PF06239 ECSIT: Evolutionarily 32.1 1.5E+02 0.0032 30.8 6.9 108 14-127 49-157 (228)
93 cd02677 MIT_SNX15 MIT: domain 32.0 1.4E+02 0.003 25.5 5.7 29 106-134 7-35 (75)
94 PRK02603 photosystem I assembl 31.6 1.6E+02 0.0035 27.1 6.6 50 90-139 20-69 (172)
95 PRK10747 putative protoheme IX 31.4 3.7E+02 0.0081 28.5 10.1 33 103-135 326-358 (398)
96 PRK15363 pathogenicity island 31.1 86 0.0019 30.6 4.9 55 86-142 52-109 (157)
97 KOG0495 HAT repeat protein [RN 30.6 61 0.0013 38.5 4.3 60 76-135 652-715 (913)
98 PRK10803 tol-pal system protei 28.6 2.7E+02 0.0059 28.6 8.2 104 29-137 143-249 (263)
99 PF14559 TPR_19: Tetratricopep 28.5 92 0.002 23.7 3.8 48 88-137 10-57 (68)
100 KOG0890 Protein kinase of the 28.2 78 0.0017 41.8 5.1 63 71-134 1666-1731(2382)
101 PRK15331 chaperone protein Sic 28.2 92 0.002 30.7 4.6 46 86-133 54-99 (165)
102 PRK15174 Vi polysaccharide exp 27.4 9.3E+02 0.02 27.7 12.9 131 8-151 228-364 (656)
103 TIGR00756 PPR pentatricopeptid 27.0 1.7E+02 0.0037 18.9 4.5 31 108-138 3-33 (35)
104 PRK11447 cellulose synthase su 26.7 3.5E+02 0.0076 33.0 9.9 51 85-137 285-335 (1157)
105 KOG0871 Class 2 transcription 26.6 6.4E+02 0.014 25.0 10.1 96 54-154 17-131 (156)
106 PRK10049 pgaA outer membrane p 25.9 8.4E+02 0.018 28.5 12.4 51 85-137 375-425 (765)
107 cd02680 MIT_calpain7_2 MIT: do 25.9 2.9E+02 0.0063 24.0 6.6 49 104-152 5-58 (75)
108 PRK10370 formate-dependent nit 24.7 6.5E+02 0.014 24.4 10.1 47 87-135 128-174 (198)
109 COG2956 Predicted N-acetylgluc 24.1 1E+02 0.0022 34.0 4.3 43 95-137 170-212 (389)
110 PF13438 DUF4113: Domain of un 23.8 57 0.0012 26.0 1.9 17 484-500 4-20 (52)
111 KOG2002 TPR-containing nuclear 23.4 1.2E+02 0.0026 37.1 5.2 100 25-133 38-192 (1018)
112 PF13432 TPR_16: Tetratricopep 23.2 89 0.0019 23.9 2.8 26 110-135 2-27 (65)
113 PRK09956 hypothetical protein; 23.0 7.2E+02 0.016 26.2 10.3 67 50-121 187-256 (308)
114 PF07064 RIC1: RIC1; InterPro 22.8 7.9E+02 0.017 25.5 10.3 73 52-135 157-234 (258)
115 PRK10153 DNA-binding transcrip 22.7 1.1E+03 0.024 26.8 12.1 31 105-135 453-483 (517)
116 PLN03081 pentatricopeptide (PP 22.3 3.5E+02 0.0076 30.7 8.4 43 89-132 143-185 (697)
117 TIGR02917 PEP_TPR_lipo putativ 21.6 1.1E+03 0.023 25.8 14.8 47 87-135 619-665 (899)
118 PF13414 TPR_11: TPR repeat; P 21.6 2.6E+02 0.0057 21.4 5.2 35 100-134 32-67 (69)
119 PF12663 DUF3788: Protein of u 21.5 69 0.0015 29.9 2.2 26 17-43 9-34 (133)
120 PF08631 SPO22: Meiosis protei 21.4 6.4E+02 0.014 25.6 9.2 59 97-156 114-175 (278)
121 PF13812 PPR_3: Pentatricopept 20.7 2.4E+02 0.0053 18.6 4.3 32 107-138 3-34 (34)
122 PF14938 SNAP: Soluble NSF att 20.7 8E+02 0.017 24.8 9.7 93 50-142 92-193 (282)
No 1
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=100.00 E-value=1.1e-45 Score=332.85 Aligned_cols=122 Identities=36% Similarity=0.670 Sum_probs=118.5
Q ss_pred HHHHHHHHHh-hcCCCCCCcHHHHHHHHHHHhhCCCCcccCchHHHHHHHHHHhccccccccchHHHHHHHHHhcCcCCH
Q 037115 10 TFFSSLIQDI-KSYSGTDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVDDP 88 (572)
Q Consensus 10 ~~fssLes~I-~sYsGDDPLdpWlrYIkWiEEsyPsGg~ks~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~dDP 88 (572)
...+.||.+| +.|+|||||++|++||+|++++||+|+.+++|..||||||++|+++++||||+|||||||+||++|++|
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~~dp 82 (125)
T smart00777 3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNCDEP 82 (125)
T ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhcCCH
Confidence 4467899999 889999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 037115 89 RVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLG 131 (572)
Q Consensus 89 ~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlG 131 (572)
.+||+||+++|||+++|+||++||.+||.+|+|++|++||++|
T Consensus 83 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~G 125 (125)
T smart00777 83 RELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQLG 125 (125)
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999998
No 2
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=100.00 E-value=6.3e-43 Score=312.00 Aligned_cols=124 Identities=38% Similarity=0.752 Sum_probs=117.7
Q ss_pred hHHHHHHHHHhhcCC-CCCCcHHHHHHHHHHHhhCCCCcccCchHHHHHHHHHHhccccccccchHHHHHHHHHhcCcCC
Q 037115 9 DTFFSSLIQDIKSYS-GTDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVDD 87 (572)
Q Consensus 9 ~~~fssLes~I~sYs-GDDPLdpWlrYIkWiEEsyPsGg~ks~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~dD 87 (572)
+...+.|+.+|++|. |||||++|++||+|++++||+++.+++|..+|||||++|+++++|+||+|||+|||+||+++++
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~~ 81 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSSD 81 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBSH
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHccC
Confidence 455689999999999 9999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 037115 88 PRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGV 132 (572)
Q Consensus 88 P~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGI 132 (572)
|.+||+||+++|||+++|+||++||.++|..|+|++|++||++||
T Consensus 82 ~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 82 PREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999998
No 3
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.1e-39 Score=367.07 Aligned_cols=447 Identities=19% Similarity=0.230 Sum_probs=317.5
Q ss_pred ccchhHhHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHhhCCCCcc-cCchHHHHHHHHHHhccccccccchHHHHHHHH-
Q 037115 3 KSDAVYDTFFSSLIQDIKSYSGTDPLLPWLQGIKKMKDSLPSKLL-KEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLH- 80 (572)
Q Consensus 3 ~~~~~~~~~fssLes~I~sYsGDDPLdpWlrYIkWiEEsyPsGg~-ks~L~~LLERCtr~FkddERYKND~RYLKIWLk- 80 (572)
.++....+++++||..|+.|.|+|||++|+|||.|++++||++.. .+.|..+||||+..+.+.++|+||+|||++|++
T Consensus 9 ~~~~~~~n~eq~li~el~~~~~~DPl~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~~ 88 (974)
T KOG1166|consen 9 QQNPTPLNYEQRLIYELESYAGNDPLDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCSL 88 (974)
T ss_pred hccCcHHHHHHHHHHHHHhhcCCCchhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHhH
Confidence 467788899999999999999999999999999999999999988 789999999999999999999999999999996
Q ss_pred -HhcCcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 037115 81 -LMDFVDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADELQKSYEQFLHRMERHNKK 159 (572)
Q Consensus 81 -YAd~~dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~AqPldrLk~ay~qFq~Rm~rr~~r 159 (572)
.++.+.+++++|.||+++|||+.+|+||++||.+||.++.|++|.+||++||+++|+|.++|+++|.+|+.|++++...
T Consensus 89 ~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~r~n~~ 168 (974)
T KOG1166|consen 89 ELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLMRQNAQ 168 (974)
T ss_pred HHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhcc
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999999998322
Q ss_pred hHHHHhhhhcCCCCCCCccccccCcccccccccccccccccccccccccchhhHHHhhhhhcccccccccCCCCCCCccc
Q 037115 160 RIQQQERKTSRKPLSARSIPFHYNENEQKSEDIGRVDHKNAEIKKISRESSQNVKQLMQANHVKLSATTSNIGSGDMKEE 239 (572)
Q Consensus 160 ~~q~ee~~~~~~~~~~rs~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~ 239 (572)
.-++... .+....+.+.++.+.- .
T Consensus 169 ~r~e~~~-~~~~~~~~~~t~~s~~------------------------------------------------~------- 192 (974)
T KOG1166|consen 169 RRQESKQ-DVKQSKPPEATLHSKP------------------------------------------------L------- 192 (974)
T ss_pred ccccccc-cccccccchhheeccc------------------------------------------------c-------
Confidence 2222110 0000111111110000 0
Q ss_pred ccCCCCCcchhhhhhhhhhhccCCCcCCCCCceEEEeecccccCCcccccccccCCCCCcccHHHH--------------
Q 037115 240 HIGNTGSINISKQQTTAKIEAHEPRISAGDETVVVKFVDTAIVGKTEAEDACHHGLVDPTINMKEA-------------- 305 (572)
Q Consensus 240 ~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~e~~~h~gl~~~tin~kea-------------- 305 (572)
-..-.+...++....+|++++.+...+++.+
T Consensus 193 -----------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~e~~~~~~vp~~~v~~ds 237 (974)
T KOG1166|consen 193 -----------------------------------PSQVAPAQPKSPEQQVNYASSNDFVNRAEPRSPEAVPNSEVYEDS 237 (974)
T ss_pred -----------------------------------ccccccccCCCchhccccccccccccccCCcccccccccccchhh
Confidence 0011223344455556666666666666654
Q ss_pred -HHHHHhhccCCCcccc-----cCcccccCCCccccCccCCeeEEecCCCCCCCccccccccccccccCccccccccccc
Q 037115 306 -INAINSMFREPLDTAK-----NGRRSHRKQNEENLGVQNGFEVFIDEDFDKGTESKEKKGVSLEQHSGAQICQPQQEQF 379 (572)
Q Consensus 306 -~~~in~mf~~p~~~~~-----~~r~~~~~~~~~~~~~~~gf~ifvded~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 379 (572)
++..++++.+|..... ..+...+..+..+....+-...+-++..+..+...+..... .. -..++..+.+
T Consensus 238 ~~~~~~~~~~q~~n~~~~q~~~~~e~~q~~~~~~~~~~~~~~~~~~~~s~~~~n~v~k~~~~~--~e---~tp~~~~~~~ 312 (974)
T KOG1166|consen 238 LYNGEQNSELQPFNSLDDQNELINESPQTSLPVTKVVPTNSKSRIFSDSSENVNPVYKLASTN--EE---NTPGRKLEQM 312 (974)
T ss_pred hhccccccccchhhcccchhhhccccccccCcccccccCcccccchhhhccccCccccCCCcc--cc---cCCCcccccc
Confidence 6778888888887653 22333344444444445556666666665555444333221 11 2234555677
Q ss_pred eeecCCCCCCCCCCCCCCccchhhcccccccCCCCCccccccceeecCCCCCCCCCCCCcccccCcccccccCceeEeec
Q 037115 380 KIFDDDEDSHGNGARNYDKENFEQIDDQHLSQGSSSSATFLNGFVFLRPSDLPSENSDDMDAERSPRVKLREDTVVHRFV 459 (572)
Q Consensus 380 ~i~~d~~~~~~~~~~n~~~~~~e~~~~~~~~~~~~~~~~~~~~f~~~~~~d~~~e~s~~~~~~~~~~~~~redtv~~rfv 459 (572)
+||+.............+- ..-|+.+......++.+-......+...-.++|....+++
T Consensus 313 ~i~~~~~~i~se~~e~~~~---------------------~~~l~~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~~~~~ 371 (974)
T KOG1166|consen 313 KIFAYVNLIDSERDEEPEG---------------------GRPLAALLERYAKPETPKEKTTGTLEDKYETEDSYLRSAS 371 (974)
T ss_pred cccccccccCCCCcccccc---------------------chHHHhccccccCCCCCccccccchhhhhhccccchhhhh
Confidence 7877655444322211111 1223334443444444433444444455556677777777
Q ss_pred cccccCCcc-ccccccCCCccCccchHHHHHHHHHhcCCCccccccCCchhhhhhhccC--CCCCC----cccccCCCCC
Q 037115 460 GSTILDEPE-VENVCHHGLVDPTINLKEAMEDINNMFGKPMDFVRAKRPKKQEKAAVRN--QDPGG----FSILPDDDLK 532 (572)
Q Consensus 460 gs~i~dep~-ven~chhgLvdPTvnlKEAMddINnMFg~PldF~~~~~~~k~~~~~~~~--~~~~g----fsil~ddd~~ 532 (572)
+ +++. .++.|+ .+.+++..+..++++|.++|.|+++.+.-+.+.....+... ..+++ |+...|.+..
T Consensus 372 ~----~q~~s~~q~p~--a~~~~~~~~~s~~e~~s~~~~~~~s~~~~~~~~~~~~~t~pk~n~~~~~~~~~~~~~~~s~~ 445 (974)
T KOG1166|consen 372 E----DQKESSPQKPK--AVIKNVAEEGSFEEENSFSLTPHPSLRMEEDKELDFEPTPPKTNGFASIASPSTENEDRSIA 445 (974)
T ss_pred c----ccccCCCCCCc--cccccccchhhhhhhccccCCCCCcchhhhccccccCCCCCcCCccccccccccccCCCchh
Confidence 6 5555 889999 99999999999999999999999999998887766665522 23332 6888888886
Q ss_pred CCCCCCCCCC----CCCCCCCCCCcccchHHHHHHHHHhhCCCC
Q 037115 533 PQHPAPPKPS----SKSRDSDLLEPTMCTKEAMDEINKMFGMPL 572 (572)
Q Consensus 533 ~~~~~~~~~s----~~~~~~~l~ept~~t~~~m~~in~mf~mpl 572 (572)
.-..++++.+ ++..+.-.+++|..|.++.++++.-|-+|.
T Consensus 446 ~~~~~~~~it~~~e~~~~~q~~~~~~~~~~~~~s~~~~~f~~f~ 489 (974)
T KOG1166|consen 446 VTKQEKSSISNALESFNQEQSFSEETQSTDQIISEAISAFHVFE 489 (974)
T ss_pred hcccccCchhhHhhhhhhhccCCccCCccchhhcccchhcccCC
Confidence 6554444332 788888999999999999999999998863
No 4
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=96.31 E-value=0.019 Score=61.14 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=59.3
Q ss_pred HHHHhcCcCCHHHHHHHHH---H-CCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHH
Q 037115 78 WLHLMDFVDDPRVMLRTME---V-NHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADELQKSYEQFLH 151 (572)
Q Consensus 78 WLkYAd~~dDP~dIF~fL~---s-ngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~AqPldrLk~ay~qFq~ 151 (572)
||+.++----+.+|+..|. . -=--.+||-||+.+|.+++..|.++....||..+|..+|+|++.|....-.++.
T Consensus 109 Cl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 109 CLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4555553223445665555 2 223589999999999999999999999999999999999999999999999975
No 5
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.28 E-value=0.12 Score=57.80 Aligned_cols=124 Identities=15% Similarity=0.251 Sum_probs=94.6
Q ss_pred CCCc--HHHHHHHHHHHhhCCCCcccCchHHHHHHHHHHhccccccccchHHHHHHHHHhcC-------cCCHHHHHHHH
Q 037115 25 TDPL--LPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDF-------VDDPRVMLRTM 95 (572)
Q Consensus 25 DDPL--dpWlrYIkWiEEsyPsGg~ks~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~-------~dDP~dIF~fL 95 (572)
+.|+ |.|..|++-++.. |....+.+++||+|-.----..=+-=-||+=|||.||=+ +.-.++||+..
T Consensus 317 ~np~nYDsWfdylrL~e~~----g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESV----GDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred hCCCCchHHHHHHHHHHhc----CCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4565 6899999988764 335567889999887654433333346999999999965 23467899887
Q ss_pred HHCCcch---hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHH
Q 037115 96 EVNHIGT---KRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADELQKSYEQFLHRMER 155 (572)
Q Consensus 96 ~sngIGt---klALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~AqPldrLk~ay~qFq~Rm~r 155 (572)
.. =|-+ .+|-.|.-||.+.-.+.+...|.+|+-.+|-. =|.++|=+.|-++...+..
T Consensus 393 l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~e 452 (677)
T KOG1915|consen 393 LD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLRE 452 (677)
T ss_pred Hh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhh
Confidence 76 4544 36888999999999999999999998666655 4889999999988876655
No 6
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.13 E-value=0.17 Score=57.97 Aligned_cols=143 Identities=16% Similarity=0.268 Sum_probs=104.4
Q ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHHHhhC-CCCcccCchHHHHHHHHHH-----------h----------ccccccc
Q 037115 12 FSSLIQDIKSYSGTDPLLPWLQGIKKMKDSL-PSKLLKEKLPRFLQKCAQT-----------F----------ESDRRYR 69 (572)
Q Consensus 12 fssLes~I~sYsGDDPLdpWlrYIkWiEEsy-PsGg~ks~L~~LLERCtr~-----------F----------kddERYK 69 (572)
.+.|-.+|+...-.---..|--||++++++- |.- -+.+++|-++. . +..+.|-
T Consensus 122 R~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPet-----s~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vl 196 (835)
T KOG2047|consen 122 RRTFDRALRALPVTQHDRIWDLYLKFVESHGLPET-----SIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVL 196 (835)
T ss_pred HHHHHHHHHhCchHhhccchHHHHHHHHhCCChHH-----HHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhc
Confidence 3455556666644444468888888887653 310 12333333322 2 2236788
Q ss_pred cchHHH--------HHHHHHhcCc-CCHHHHH----HHHHHCCcch---hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 037115 70 NDMRYL--------RIWLHLMDFV-DDPRVML----RTMEVNHIGT---KRSLFYQANALYYEKMKKFEEAEKMYHLGVQ 133 (572)
Q Consensus 70 ND~RYL--------KIWLkYAd~~-dDP~dIF----~fL~sngIGt---klALFYEaWA~~LE~~g~fkeAdeIYqlGIq 133 (572)
||.+++ ++|+..-+++ .+|..++ ....+.||+. ++..+|...|.||-..|.|++|..||..||+
T Consensus 197 n~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 197 NQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred CchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999988 5899999975 5677654 3467788875 7888999999999999999999999999999
Q ss_pred C--CCCcHHHHHHHHHHHHHHHHHHHhh
Q 037115 134 N--LAEPADELQKSYEQFLHRMERHNKK 159 (572)
Q Consensus 134 r--~AqPldrLk~ay~qFq~Rm~rr~~r 159 (572)
. ..+-...+-..|.+|+.++...+..
T Consensus 277 ~v~tvrDFt~ifd~Ya~FEE~~~~~~me 304 (835)
T KOG2047|consen 277 TVMTVRDFTQIFDAYAQFEESCVAAKME 304 (835)
T ss_pred hheehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 7 6788999999999999998876554
No 7
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.94 E-value=0.077 Score=53.44 Aligned_cols=110 Identities=13% Similarity=0.256 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhCCCCcccCchHHHHHHHHHHhccccccccchHHHHHHHHHhcC----cCC---HHHHHHHHHHCCcch
Q 037115 30 PWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDF----VDD---PRVMLRTMEVNHIGT 102 (572)
Q Consensus 30 pWlrYIkWiEEsyPsGg~ks~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~----~dD---P~dIF~fL~sngIGt 102 (572)
+|+.|++|+..+. | .+....++++|.. +.. -.| .||+.||.+ ..| +..||.-.... ..
T Consensus 3 v~i~~m~~~~r~~--g--~~~aR~vF~~a~~-~~~-~~~-------~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~ 67 (280)
T PF05843_consen 3 VWIQYMRFMRRTE--G--IEAARKVFKRARK-DKR-CTY-------HVYVAYALMEYYCNKDPKRARKIFERGLKK--FP 67 (280)
T ss_dssp HHHHHHHHHHHHH--H--HHHHHHHHHHHHC-CCC-S-T-------HHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HT
T ss_pred HHHHHHHHHHHhC--C--hHHHHHHHHHHHc-CCC-CCH-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CC
Confidence 5777777776542 1 2334567777752 111 112 567777764 244 45677766643 33
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCC-Cc-HHHHHHHHHHHHHHHH
Q 037115 103 KRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLA-EP-ADELQKSYEQFLHRME 154 (572)
Q Consensus 103 klALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~A-qP-ldrLk~ay~qFq~Rm~ 154 (572)
.-..||..|..+|...++...|..+|+++|.... +. ...|.++|-+|+.+..
T Consensus 68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G 121 (280)
T PF05843_consen 68 SDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG 121 (280)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC
Confidence 3456777777777777777777777777777622 12 2447777777777665
No 8
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.37 E-value=0.21 Score=55.88 Aligned_cols=123 Identities=14% Similarity=0.252 Sum_probs=82.0
Q ss_pred HHHHHhhcCCCCCCcHHHHHHHHHHHhhCCCCcccCchHHHHHHHHHHhccccccccchHHHHHHHHHhcC------cCC
Q 037115 14 SLIQDIKSYSGTDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDF------VDD 87 (572)
Q Consensus 14 sLes~I~sYsGDDPLdpWlrYIkWiEEsyPsGg~ks~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~------~dD 87 (572)
.|+..|+.- -=-+..|.+|-+|=++-- . -..-..+.||++. .|-|++-|||+||++ ++.
T Consensus 61 efEd~irrn--R~~~~~WikYaqwEesq~---e-~~RARSv~ERALd---------vd~r~itLWlkYae~Emknk~vNh 125 (677)
T KOG1915|consen 61 EFEDQIRRN--RLNMQVWIKYAQWEESQK---E-IQRARSVFERALD---------VDYRNITLWLKYAEFEMKNKQVNH 125 (677)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHhHH---H-HHHHHHHHHHHHh---------cccccchHHHHHHHHHHhhhhHhH
Confidence 355555532 223678999999987521 1 1223568888775 488999999999986 567
Q ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHH
Q 037115 88 PRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADELQKSYEQFLHRMER 155 (572)
Q Consensus 88 P~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~AqPldrLk~ay~qFq~Rm~r 155 (572)
++.|+.--.. |--..-.||-.|-..-|.-|+..-|.+||.+=+.- +|-+.--..|-.|..|...
T Consensus 126 ARNv~dRAvt--~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRyke 189 (677)
T KOG1915|consen 126 ARNVWDRAVT--ILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKE 189 (677)
T ss_pred HHHHHHHHHH--hcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhH
Confidence 7777664332 34456667777777777778888888877776654 4656666666666666544
No 9
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.17 E-value=0.23 Score=50.08 Aligned_cols=88 Identities=18% Similarity=0.365 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHhcCc------CCHHHHHHHHHHCCcchh--hHHHHHHHHHHHHHccCHHH
Q 037115 52 PRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFV------DDPRVMLRTMEVNHIGTK--RSLFYQANALYYEKMKKFEE 123 (572)
Q Consensus 52 ~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~------dDP~dIF~fL~sngIGtk--lALFYEaWA~~LE~~g~fke 123 (572)
..++|+.++.|..+ ..+|+.|+++. ++.+.||+-.... ++.. .-.+|..|..+-...|++..
T Consensus 56 ~~Ife~glk~f~~~---------~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~ 125 (280)
T PF05843_consen 56 RKIFERGLKKFPSD---------PDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLES 125 (280)
T ss_dssp HHHHHHHHHHHTT----------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHH
T ss_pred HHHHHHHHHHCCCC---------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHH
Confidence 57788888776655 34588888762 3467777777766 4433 46788888888888888888
Q ss_pred HHHHHHHHHHCCCCcHHHHHHHHHHHHHHHH
Q 037115 124 AEKMYHLGVQNLAEPADELQKSYEQFLHRME 154 (572)
Q Consensus 124 AdeIYqlGIqr~AqPldrLk~ay~qFq~Rm~ 154 (572)
+.+|+++-.+.--+ ......|..|..
T Consensus 126 v~~v~~R~~~~~~~-----~~~~~~f~~ry~ 151 (280)
T PF05843_consen 126 VRKVEKRAEELFPE-----DNSLELFSDRYS 151 (280)
T ss_dssp HHHHHHHHHHHTTT-----S-HHHHHHCCT-
T ss_pred HHHHHHHHHHHhhh-----hhHHHHHHHHhh
Confidence 88888776664333 444555555543
No 10
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=92.66 E-value=1.2 Score=50.62 Aligned_cols=102 Identities=13% Similarity=0.336 Sum_probs=77.5
Q ss_pred chHHHHHHHHHHhccccccccchHHHHHHHHHhcCcCC-------H--HHH--HHH-HHHCCcchhhHHHHHHHHHHHHH
Q 037115 50 KLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVDD-------P--RVM--LRT-MEVNHIGTKRSLFYQANALYYEK 117 (572)
Q Consensus 50 ~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~dD-------P--~dI--F~f-L~sngIGtklALFYEaWA~~LE~ 117 (572)
.+-.|+.||+..-.+ |-+|-.|++|+.. . ..+ |.| |...|.-.+...+|.+|-.+|+.
T Consensus 71 ~VEkLF~RCLvkvLn----------lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~ 140 (656)
T KOG1914|consen 71 SVEKLFSRCLVKVLN----------LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEG 140 (656)
T ss_pred HHHHHHHHHHHHHhh----------HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHc
Confidence 456788999988665 8899999998532 1 122 333 55566668888889999888764
Q ss_pred ---------ccCHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhhhH
Q 037115 118 ---------MKKFEEAEKMYHLGVQNLAEPADELQKSYEQFLHRMERHNKKRI 161 (572)
Q Consensus 118 ---------~g~fkeAdeIYqlGIqr~AqPldrLk~ay~qFq~Rm~rr~~r~~ 161 (572)
.++...-..||++++..----++.|.+.|.+|+.-+-..+.+++
T Consensus 141 vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~ 193 (656)
T KOG1914|consen 141 VEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKF 193 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556678899999998888899999999999998887777665
No 11
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.82 E-value=0.8 Score=51.27 Aligned_cols=99 Identities=12% Similarity=0.322 Sum_probs=73.7
Q ss_pred HHHHHHHHHhccccccccchHHHHHHHHHhcCcC--------CH----HHHHHHHHHC-CcchhhHHHHHHHHHHHHH--
Q 037115 53 RFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVD--------DP----RVMLRTMEVN-HIGTKRSLFYQANALYYEK-- 117 (572)
Q Consensus 53 ~LLERCtr~FkddERYKND~RYLKIWLkYAd~~d--------DP----~dIF~fL~sn-gIGtklALFYEaWA~~LE~-- 117 (572)
.|+-||+..-.+ |-+|..|.+++. .. .+.|+|.... +.-.+..-||-+|-.+||.
T Consensus 97 ~lf~rCL~k~l~----------ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~ 166 (660)
T COG5107 97 SLFGRCLKKSLN----------LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIE 166 (660)
T ss_pred HHHHHHHhhhcc----------HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhcc
Confidence 455566655333 779999998742 12 2678887662 2334678899999988865
Q ss_pred -------ccCHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHhhhH
Q 037115 118 -------MKKFEEAEKMYHLGVQNLAEPADELQKSYEQFLHRMERHNKKRI 161 (572)
Q Consensus 118 -------~g~fkeAdeIYqlGIqr~AqPldrLk~ay~qFq~Rm~rr~~r~~ 161 (572)
+.+.+.-..+|+++|+---.-+++|.+.|.+|+.-+-+.+.|+.
T Consensus 167 ~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKf 217 (660)
T COG5107 167 ELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKF 217 (660)
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556778899999998888899999999999998888777665
No 12
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.34 E-value=0.26 Score=56.64 Aligned_cols=86 Identities=22% Similarity=0.377 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhccc--cccccc-------hHHHHHHHHHhcC------cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHH
Q 037115 52 PRFLQKCAQTFESD--RRYRND-------MRYLRIWLHLMDF------VDDPRVMLRTMEVNHIGTKRSLFYQANALYYE 116 (572)
Q Consensus 52 ~~LLERCtr~Fkdd--ERYKND-------~RYLKIWLkYAd~------~dDP~dIF~fL~sngIGtklALFYEaWA~~LE 116 (572)
+.||++++-.=... +.|.|- .|=||||-.|||+ +...+.+|.-+...+|.|- ..-+.||.+||
T Consensus 445 l~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP--qii~NyAmfLE 522 (835)
T KOG2047|consen 445 LKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP--QIIINYAMFLE 522 (835)
T ss_pred HHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHH
Confidence 46777766432221 344443 3779999999997 3467899999999999874 56789999999
Q ss_pred HccCHHHHHHHHHHHHHCCCCcH
Q 037115 117 KMKKFEEAEKMYHLGVQNLAEPA 139 (572)
Q Consensus 117 ~~g~fkeAdeIYqlGIqr~AqPl 139 (572)
...-|.+|-++|.+||.---=|.
T Consensus 523 eh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 523 EHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred hhHHHHHHHHHHHcCCccCCCcc
Confidence 99999999999999999755553
No 13
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=91.27 E-value=1.2 Score=54.84 Aligned_cols=119 Identities=16% Similarity=0.270 Sum_probs=78.3
Q ss_pred CCCcHHHHHHHHHHHhhCCCCcccCchHHHHHHHHHHhccccccccchHHHHHHHHHhcCc---C---CHHHHHHHHHHC
Q 037115 25 TDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFV---D---DPRVMLRTMEVN 98 (572)
Q Consensus 25 DDPLdpWlrYIkWiEEsyPsGg~ks~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~---d---DP~dIF~fL~sn 98 (572)
..---+|++|+.+..+.- .-+.-..+-||++.+. -||--.--|+||+.|..+- . .-..+|..+..
T Consensus 1455 PNSSi~WI~YMaf~Lels----EiekAR~iaerAL~tI----N~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq- 1525 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELS----EIEKARKIAERALKTI----NFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ- 1525 (1710)
T ss_pred CCcchHHHHHHHHHhhhh----hhHHHHHHHHHHhhhC----CcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH-
Confidence 334568999999988642 1234467889988886 3555556799999999862 2 23355554332
Q ss_pred CcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHH
Q 037115 99 HIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADELQKSYEQFLHRMER 155 (572)
Q Consensus 99 gIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~AqPldrLk~ay~qFq~Rm~r 155 (572)
++.-+ --|...+.+|+.-+.+++|.++|++=+.+-- -.-.....|.+|+.|.-.
T Consensus 1526 -ycd~~-~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne 1579 (1710)
T KOG1070|consen 1526 -YCDAY-TVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNE 1579 (1710)
T ss_pred -hcchH-HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccH
Confidence 12111 2366667778888889999999998888754 334455667777765443
No 14
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=90.10 E-value=2 Score=38.17 Aligned_cols=92 Identities=15% Similarity=0.171 Sum_probs=56.6
Q ss_pred HHHHHHHHhccccccccchHHHHHHHHHhc--CcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 037115 54 FLQKCAQTFESDRRYRNDMRYLRIWLHLMD--FVDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLG 131 (572)
Q Consensus 54 LLERCtr~FkddERYKND~RYLKIWLkYAd--~~dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlG 131 (572)
.++..+.++.+ ..|-||.||.+-|+...- ...-|..|-+.|..+||-..+.. ..++..-..+.|..+.++-
T Consensus 10 ~I~~vi~~l~~-~gyidD~~ya~~~v~~~~~~~~~G~~~I~~~L~~kGi~~~~i~------~~l~~~~~~e~a~~~~~kk 82 (121)
T PF02631_consen 10 AIEEVIDRLKE-LGYIDDERYAESYVRSRLRRKGKGPRRIRQKLKQKGIDREIIE------EALEEYDEEEEALELAEKK 82 (121)
T ss_dssp HHHHHHHHHHH-TTSS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHTT--HHHHH------HHHTCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHHHHhcccccccHHHHHHHHHHHCCChHHHH------HHHHHhhHHHHHHHHHHHH
Confidence 34444444332 389999999999999777 45679999999999999987654 2223222233466676666
Q ss_pred HHCC-CCcHHHHHHHHHHHHHH
Q 037115 132 VQNL-AEPADELQKSYEQFLHR 152 (572)
Q Consensus 132 Iqr~-AqPldrLk~ay~qFq~R 152 (572)
.... ..+-..++++...|+.|
T Consensus 83 ~~~~~~~~~~~~~~K~~~~L~r 104 (121)
T PF02631_consen 83 YRRYRKPSDRKRKQKLIRFLMR 104 (121)
T ss_dssp HHHTTTS-CHHHHHHHHHHHHH
T ss_pred HhcccCCCCHHHHHHHHHHHHH
Confidence 6665 34556666666666655
No 15
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.04 E-value=5.6 Score=41.20 Aligned_cols=115 Identities=16% Similarity=0.147 Sum_probs=80.1
Q ss_pred hhHhHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHhhCCCCcccCchHHHHHHHHHHhccccccccchHHHHHHHHHhcCc
Q 037115 6 AVYDTFFSSLIQDIKSYSGTDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFV 85 (572)
Q Consensus 6 ~~~~~~fssLes~I~sYsGDDPLdpWlrYIkWiEEsyPsGg~ks~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~ 85 (572)
+..+.-.+.|+.+|+.- .+=-.+|+.|++=..+.++. ..|....++++.+ ++....||+.|++++
T Consensus 45 a~~E~klsilerAL~~n--p~~~~L~l~~l~~~~~~~~~----~~l~~~we~~l~~---------~~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 45 ALAERKLSILERALKHN--PDSERLLLGYLEEGEKVWDS----EKLAKKWEELLFK---------NPGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHH---------CCCChHHHHHHHHHH
Confidence 44455567788888873 35567888888888777753 3456666666666 344788999999862
Q ss_pred ---------CCHHHHHHH----HHHCCcc------------hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCC
Q 037115 86 ---------DDPRVMLRT----MEVNHIG------------TKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNL 135 (572)
Q Consensus 86 ---------dDP~dIF~f----L~sngIG------------tklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~ 135 (572)
++-+.+|.. |....=| ..+..++..++.++-..|..+.|..++|.=+.-+
T Consensus 110 q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 110 QSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 244455554 3333333 3555667788999999999999999999988864
No 16
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.50 E-value=3.9 Score=46.62 Aligned_cols=125 Identities=14% Similarity=0.171 Sum_probs=80.9
Q ss_pred HHHHHhhcCC-CCCCc-----HHHHHHHHHHHhhCCCCcccCchHHHHHHHHHHhccccccccchHHHHHHHHHhcCcCC
Q 037115 14 SLIQDIKSYS-GTDPL-----LPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVDD 87 (572)
Q Consensus 14 sLes~I~sYs-GDDPL-----dpWlrYIkWiEEsyPsGg~ks~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~dD 87 (572)
.+++.|+.+. .-+|| ..|..|....+. + |.-+.+.-+.|||+-.. .+|..+||+|+.++..
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~-~---g~~~~~~~l~ercli~c---------A~Y~efWiky~~~m~~ 343 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEIT-L---GDFSRVFILFERCLIPC---------ALYDEFWIKYARWMES 343 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhh-c---ccHHHHHHHHHHHHhHH---------hhhHHHHHHHHHHHHH
Confidence 4566666443 45554 458777665542 2 44567788999999886 5799999999997532
Q ss_pred --HHHHHH--HHHHCCcchhh-HHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHH
Q 037115 88 --PRVMLR--TMEVNHIGTKR-SLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADELQKSYEQFLHR 152 (572)
Q Consensus 88 --P~dIF~--fL~sngIGtkl-ALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~AqPldrLk~ay~qFq~R 152 (572)
-.++=. ......|-.+- ...-.-||.+.|..|++..|..+|+.=++.. --+..+.-++...++|
T Consensus 344 ~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r 412 (577)
T KOG1258|consen 344 SGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERR 412 (577)
T ss_pred cCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHH
Confidence 122222 23334444433 3345568899999999999999999988888 3344444444444433
No 17
>PRK14136 recX recombination regulator RecX; Provisional
Probab=87.45 E-value=4.6 Score=42.94 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=50.4
Q ss_pred HHHHHHHHHhccccccccchHHHHHHHHHhcCcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 037115 53 RFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGV 132 (572)
Q Consensus 53 ~LLERCtr~FkddERYKND~RYLKIWLkYAd~~dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGI 132 (572)
.+++..|.+++ ...|-||.||.+.|+.+--...=|..|-..|..+||...+.. .+++.+-| ..++.|..++++=.
T Consensus 194 e~IE~VIerLk-e~gYLDDeRFAesyVr~R~~kkGp~rIrqELrQKGId~eLIE--qALeeieE--DE~E~A~~L~eKK~ 268 (309)
T PRK14136 194 DSVEPLLDALE-REGWLSDARFAESLVHRRASRVGSARIVSELKRHAVGDALVE--SVGAQLRE--TEFERAQAVWRKKF 268 (309)
T ss_pred HHHHHHHHHHH-HcCCcCHHHHHHHHHHHHhhchhHHHHHHHHHHcCCCHHHHH--HHHHhccH--hHHHHHHHHHHHHh
Confidence 34445444433 349999999999999873223458899999999999987754 22333211 23667777777655
Q ss_pred H
Q 037115 133 Q 133 (572)
Q Consensus 133 q 133 (572)
.
T Consensus 269 ~ 269 (309)
T PRK14136 269 G 269 (309)
T ss_pred c
Confidence 3
No 18
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=86.55 E-value=4.8 Score=45.51 Aligned_cols=131 Identities=13% Similarity=0.232 Sum_probs=85.7
Q ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHHHh---hC-------CCC--cc----cCchHHHHHHHHHHhccccccccchHHHH
Q 037115 13 SSLIQDIKSYSGTDPLLPWLQGIKKMKD---SL-------PSK--LL----KEKLPRFLQKCAQTFESDRRYRNDMRYLR 76 (572)
Q Consensus 13 ssLes~I~sYsGDDPLdpWlrYIkWiEE---sy-------PsG--g~----ks~L~~LLERCtr~FkddERYKND~RYLK 76 (572)
+.|+..|+.- .--+.-|++||+.=.. .- -.+ .+ ...+..++.+++.+|..| ++
T Consensus 38 r~fE~kL~rr--~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~D---------~~ 106 (568)
T KOG2396|consen 38 RDFELKLQRR--TLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNGD---------VK 106 (568)
T ss_pred HHHHHHHccC--cccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCCC---------HH
Confidence 6677777664 4456778888875221 00 000 01 124567778888877664 56
Q ss_pred HHHHHhcCcC------CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHCCCCcHHHHHHHHHHH
Q 037115 77 IWLHLMDFVD------DPRVMLRTMEVNHIGTKRSLFYQANALYYEKM-KKFEEAEKMYHLGVQNLAEPADELQKSYEQF 149 (572)
Q Consensus 77 IWLkYAd~~d------DP~dIF~fL~sngIGtklALFYEaWA~~LE~~-g~fkeAdeIYqlGIqr~AqPldrLk~ay~qF 149 (572)
+|+.|+.+|. .-..||..|.... -.-+.+|+--|.++... -+++.|.++|..|++.+- -..+|...|=.+
T Consensus 107 lW~~yi~f~kk~~~~~~v~ki~~~~l~~H--p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~np-dsp~Lw~eyfrm 183 (568)
T KOG2396|consen 107 LWLSYIAFCKKKKTYGEVKKIFAAMLAKH--PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNP-DSPKLWKEYFRM 183 (568)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCC-CChHHHHHHHHH
Confidence 8888888763 2347888887654 34567777777766655 459999999999999984 456777777666
Q ss_pred HHHHHHHH
Q 037115 150 LHRMERHN 157 (572)
Q Consensus 150 q~Rm~rr~ 157 (572)
+--.....
T Consensus 184 EL~~~~Kl 191 (568)
T KOG2396|consen 184 ELMYAEKL 191 (568)
T ss_pred HHHHHHHH
Confidence 65544443
No 19
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=84.58 E-value=7.5 Score=46.87 Aligned_cols=121 Identities=15% Similarity=0.105 Sum_probs=79.4
Q ss_pred cCCCCCCcHHHHHHHHHHHhhCCCCcccCchHHHHHHHHHHhccccccccchHHHHHHHHHhcCcCCHHHHHHHHHHCCc
Q 037115 21 SYSGTDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVDDPRVMLRTMEVNHI 100 (572)
Q Consensus 21 sYsGDDPLdpWlrYIkWiEEsyPsGg~ks~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~dDP~dIF~fL~sngI 100 (572)
.+.+.+|+..|.+||.|++-..+.. .--.-.+-++.|...+..... +.+-++.||+++-..-...+.|.-..+
T Consensus 8 ~~~~~~~~n~eq~li~el~~~~~~D-Pl~~w~ryi~wv~~~~~~~~~---~~~~l~~~lerc~~~~~~lk~Y~nD~R--- 80 (974)
T KOG1166|consen 8 EQQNPTPLNYEQRLIYELESYAGND-PLDKWLRYIEWVLEVYPEGKE---NQSLLRNLLERCLEELEDLKRYRNDPR--- 80 (974)
T ss_pred hhccCcHHHHHHHHHHHHHhhcCCC-chhhhHhHhhhhhhccccCCc---hhhhHHHHHHHHHHhccchhhccccHH---
Confidence 6778999999999999997544322 223335677777777666555 456666666665544444444444443
Q ss_pred chhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCCcHHHH-HHHHHHHHHHHHH
Q 037115 101 GTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADEL-QKSYEQFLHRMER 155 (572)
Q Consensus 101 GtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~AqPldrL-k~ay~qFq~Rm~r 155 (572)
|-.-|.. |+....+++|+.+|..=-..++-+.-.| -.+|..++.|+..
T Consensus 81 ------fl~~~~~-~~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~ 129 (974)
T KOG1166|consen 81 ------FLILWCS-LELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEY 129 (974)
T ss_pred ------HHHHHHh-HHHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Confidence 3333333 8888999999999998888877775544 4556666666655
No 20
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=82.47 E-value=3.1 Score=48.45 Aligned_cols=112 Identities=15% Similarity=0.246 Sum_probs=79.7
Q ss_pred HhHHHHHHHHHhhcCCCCCCcHHHHHHHH--HHHhhCCCCcccCchHHHHHHHHHHhccccccccchHHHHHHHHHhcCc
Q 037115 8 YDTFFSSLIQDIKSYSGTDPLLPWLQGIK--KMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFV 85 (572)
Q Consensus 8 ~~~~fssLes~I~sYsGDDPLdpWlrYIk--WiEEsyPsGg~ks~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~ 85 (572)
++++ |.|...-++-+|. -.+|..|+. |..+..- .-++|||+|++.|-+ |-|+||..-+..
T Consensus 634 ~era-R~llakar~~sgT--eRv~mKs~~~er~ld~~e------eA~rllEe~lk~fp~---------f~Kl~lmlGQi~ 695 (913)
T KOG0495|consen 634 LERA-RDLLAKARSISGT--ERVWMKSANLERYLDNVE------EALRLLEEALKSFPD---------FHKLWLMLGQIE 695 (913)
T ss_pred HHHH-HHHHHHHhccCCc--chhhHHHhHHHHHhhhHH------HHHHHHHHHHHhCCc---------hHHHHHHHhHHH
Confidence 3444 5565555554443 367888865 5544332 226899999999865 789999988754
Q ss_pred CCHHHH----HHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCC
Q 037115 86 DDPRVM----LRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAE 137 (572)
Q Consensus 86 dDP~dI----F~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~Aq 137 (572)
.....| -.|+..-+.+-.+-.+|...|.+-|+.|..-+|..|+.+|.-++-.
T Consensus 696 e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk 751 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK 751 (913)
T ss_pred HHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC
Confidence 332211 2356666677888999999999999999999999999999887644
No 21
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=82.14 E-value=2.9 Score=40.97 Aligned_cols=80 Identities=21% Similarity=0.243 Sum_probs=44.4
Q ss_pred cchHHHHHHHHHhcCcCCHH---HHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCCcHHHHHHHH
Q 037115 70 NDMRYLRIWLHLMDFVDDPR---VMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADELQKSY 146 (572)
Q Consensus 70 ND~RYLKIWLkYAd~~dDP~---dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~AqPldrLk~ay 146 (572)
.++++|..|+.+.....+.. +++..+....--..-+.||..+|.++...|++++|..+|+.++...-.- ..+...+
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~-~~~~~~l 186 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD-PDARNAL 186 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHH
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHH
Confidence 46788877777766666554 4555554333234678899999999999999999999999999986442 2334444
Q ss_pred HHHH
Q 037115 147 EQFL 150 (572)
Q Consensus 147 ~qFq 150 (572)
-.++
T Consensus 187 ~~~l 190 (280)
T PF13429_consen 187 AWLL 190 (280)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 22
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=81.97 E-value=15 Score=46.16 Aligned_cols=133 Identities=14% Similarity=0.215 Sum_probs=98.3
Q ss_pred chhHhHHHHHHHHHhhcC---CCCCCcHHHHHHHHHHHhhCCCCcccCchHHHHHHHHHHhccccccccchHHHHHHHHH
Q 037115 5 DAVYDTFFSSLIQDIKSY---SGTDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHL 81 (572)
Q Consensus 5 ~~~~~~~fssLes~I~sY---sGDDPLdpWlrYIkWiEEsyPsGg~ks~L~~LLERCtr~FkddERYKND~RYLKIWLkY 81 (572)
-++++.+.+-.+.+|.+- .++--|-+|.-|++.- ..| |.+..|.++.||+.+|. +-|+ =|+++.=-|
T Consensus 1471 lsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlE-n~y---G~eesl~kVFeRAcqyc---d~~~---V~~~L~~iy 1540 (1710)
T KOG1070|consen 1471 LSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLE-NAY---GTEESLKKVFERACQYC---DAYT---VHLKLLGIY 1540 (1710)
T ss_pred hhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHH-Hhh---CcHHHHHHHHHHHHHhc---chHH---HHHHHHHHH
Confidence 345666667777777776 6899999999999865 445 34667889999988773 2232 356666566
Q ss_pred hcC--cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHH
Q 037115 82 MDF--VDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADELQKSYEQFLHRMER 155 (572)
Q Consensus 82 Ad~--~dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~AqPldrLk~ay~qFq~Rm~r 155 (572)
... .+++.++|+.|..+ -| +.-.-|+.||.+|-.+..-+.|..|++++++.- |. +.|-+|......
T Consensus 1541 ~k~ek~~~A~ell~~m~KK-F~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l--Pk----~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1541 EKSEKNDEADELLRLMLKK-FG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSL--PK----QEHVEFISKFAQ 1608 (1710)
T ss_pred HHhhcchhHHHHHHHHHHH-hc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc--ch----hhhHHHHHHHHH
Confidence 653 56788999988764 55 677789999999999999999999999999875 32 556666655444
No 23
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.03 E-value=3.9 Score=27.46 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHC
Q 037115 105 SLFYQANALYYEKMKKFEEAEKMYHLGVQN 134 (572)
Q Consensus 105 ALFYEaWA~~LE~~g~fkeAdeIYqlGIqr 134 (572)
|..|-..|..+...|+|++|.+.|+++++-
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 457788899999999999999999999874
No 24
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=80.94 E-value=7.7 Score=44.44 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=87.3
Q ss_pred cHHHHHHHHHHHhhCCC--Ccc--cCchHHHHHHHHHHhccccccccchHHHHHHHHHhcCcCC----------------
Q 037115 28 LLPWLQGIKKMKDSLPS--KLL--KEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVDD---------------- 87 (572)
Q Consensus 28 LdpWlrYIkWiEEsyPs--Gg~--ks~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~dD---------------- 87 (572)
++.|.++|+|=.++=-. ++. ...+.=+.|+|+.++...+ .||..|+.+...
T Consensus 237 v~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~p---------eiWy~~s~yl~~~s~l~~~~~d~~~a~~ 307 (656)
T KOG1914|consen 237 VELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHP---------EIWYDYSMYLIEISDLLTEKGDVPDAKS 307 (656)
T ss_pred HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCH---------HHHHHHHHHHHHhhHHHHHhcccccchh
Confidence 37899999998754211 111 2344557899999986543 689999876422
Q ss_pred ----HHHHHHHHHHCCcchhhHHHHHHHHHHHHHccC---HHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHh
Q 037115 88 ----PRVMLRTMEVNHIGTKRSLFYQANALYYEKMKK---FEEAEKMYHLGVQNLAEPADELQKSYEQFLHRMERHNK 158 (572)
Q Consensus 88 ----P~dIF~fL~sngIGtklALFYEaWA~~LE~~g~---fkeAdeIYqlGIqr~AqPldrLk~ay~qFq~Rm~rr~~ 158 (572)
...+|.-...--- ...+++|-++|.+-|..-+ ++.-..+|+.-+...-.-+..+-=.|..|.+|.+--..
T Consensus 308 ~t~e~~~~yEr~I~~l~-~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlka 384 (656)
T KOG1914|consen 308 LTDEAASIYERAIEGLL-KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKA 384 (656)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHH
Confidence 3345544433222 3378889999999999877 99999999999998888888888899999988776544
No 25
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=80.31 E-value=9.3 Score=31.34 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHC-----CCCc----HHHHHHHHHHHHHHHHHH
Q 037115 103 KRSLFYQANALYYEKMKKFEEAEKMYHLGVQN-----LAEP----ADELQKSYEQFLHRMERH 156 (572)
Q Consensus 103 klALFYEaWA~~LE~~g~fkeAdeIYqlGIqr-----~AqP----ldrLk~ay~qFq~Rm~rr 156 (572)
.-|..|+.=|.-++..|++++|...|..|+.. +..| .+.+..+..+.+.|++..
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~raE~l 68 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRAEEI 68 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788888899999999999999999875 3445 455566666666666554
No 26
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=78.60 E-value=3.5 Score=30.40 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHCCCC
Q 037115 107 FYQANALYYEKMKKFEEAEKMYHLGVQNLAE 137 (572)
Q Consensus 107 FYEaWA~~LE~~g~fkeAdeIYqlGIqr~Aq 137 (572)
.|..+|..|...|++++|.++|+..|+..-.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 5778999999999999999999999997533
No 27
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.23 E-value=3.9 Score=24.58 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHC
Q 037115 106 LFYQANALYYEKMKKFEEAEKMYHLGVQN 134 (572)
Q Consensus 106 LFYEaWA~~LE~~g~fkeAdeIYqlGIqr 134 (572)
..|..+|..+...+++++|...|+.+|+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35778899999999999999999999864
No 28
>PRK14134 recX recombination regulator RecX; Provisional
Probab=75.36 E-value=20 Score=37.22 Aligned_cols=97 Identities=11% Similarity=0.056 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHhcCcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 037115 52 PRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLG 131 (572)
Q Consensus 52 ~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlG 131 (572)
..++++++.++. ...|-||.||.+.|+..--...-|..|-..|..+||...+.. .+.+.+-+ ...+..|..+.++-
T Consensus 92 ~~~Ie~vI~~L~-e~~yldD~ryA~~yv~~~~~~~G~~~I~~eL~qKGI~~~iIe--~al~~~~~-e~e~e~a~~l~~Kk 167 (283)
T PRK14134 92 EDAVNRVIRFLK-EYNFIDDDKYCDMYIREKINSYGRNKIKYTLLNKGIKENIII--EKINNIDE-EKEKKVAYKLAEKK 167 (283)
T ss_pred HHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHCCCCHHHHH--HHHHhCCh-hhHHHHHHHHHHHh
Confidence 345666665543 349999999999999964333458999999999999988654 22222111 12245565666555
Q ss_pred HHCCC---CcHHHHHHHHHHHHHH
Q 037115 132 VQNLA---EPADELQKSYEQFLHR 152 (572)
Q Consensus 132 Iqr~A---qPldrLk~ay~qFq~R 152 (572)
....+ .+...++++...|+.|
T Consensus 168 ~~~~~~~~~~~~k~k~Kl~~~L~r 191 (283)
T PRK14134 168 YKILILSEKNKFKIYKKLGPYLIS 191 (283)
T ss_pred hcccccccccHHHHHHHHHHHHHH
Confidence 44332 2344566666666655
No 29
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=75.27 E-value=21 Score=30.48 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHC-----CCCcHHHH----HHHHHHHHHHHHHH
Q 037115 102 TKRSLFYQANALYYEKMKKFEEAEKMYHLGVQN-----LAEPADEL----QKSYEQFLHRMERH 156 (572)
Q Consensus 102 tklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr-----~AqPldrL----k~ay~qFq~Rm~rr 156 (572)
..-|.-|..=|.-++..|+|.+|...|+.||.- +.+|-..+ ..+..+.+.|.+..
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~L 66 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAI 66 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888899999999999999999999985 55664444 44444555554443
No 30
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.26 E-value=7.1 Score=26.47 Aligned_cols=30 Identities=20% Similarity=0.322 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHC
Q 037115 105 SLFYQANALYYEKMKKFEEAEKMYHLGVQN 134 (572)
Q Consensus 105 ALFYEaWA~~LE~~g~fkeAdeIYqlGIqr 134 (572)
|..|...|.++...|++++|.+.|+++++-
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456788899999999999999999999864
No 31
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=75.05 E-value=9.6 Score=39.50 Aligned_cols=90 Identities=11% Similarity=0.159 Sum_probs=61.8
Q ss_pred HhHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHhhCCCCcccCchHHHHHHHHHHhcccccc---------ccchHHHHHH
Q 037115 8 YDTFFSSLIQDIKSYSGTDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRY---------RNDMRYLRIW 78 (572)
Q Consensus 8 ~~~~fssLes~I~sYsGDDPLdpWlrYIkWiEEsyPsGg~ks~L~~LLERCtr~FkddERY---------KND~RYLKIW 78 (572)
.+.+.+.++..+..+.+ =..+|..||.|.+.++-.- +-+.+..++++|++.+...... .-+..+|.|.
T Consensus 81 ~~~l~~~we~~l~~~~~--~~~LW~~yL~~~q~~~~~f-~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~ 157 (321)
T PF08424_consen 81 SEKLAKKWEELLFKNPG--SPELWREYLDFRQSNFASF-TVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVF 157 (321)
T ss_pred HHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence 34555667777777633 4789999999999876432 2356789999999998776444 3477888888
Q ss_pred HHHhcCcC------CHHHHHHHHHHCCc
Q 037115 79 LHLMDFVD------DPRVMLRTMEVNHI 100 (572)
Q Consensus 79 LkYAd~~d------DP~dIF~fL~sngI 100 (572)
++|+.++. -+..+|+-+..-..
T Consensus 158 ~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 158 LRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 88877532 24455555554444
No 32
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=74.55 E-value=65 Score=37.63 Aligned_cols=94 Identities=7% Similarity=0.028 Sum_probs=66.4
Q ss_pred CchHHHHHHHHHHhccccccccchHHHHHHHHHhcCcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHH
Q 037115 49 EKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMY 128 (572)
Q Consensus 49 s~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIY 128 (572)
..+-+-|+.|=+.+..++...+=.--+-..|.=+.-+.++.++|.-+.. =+...+.-+..||..|...|+.++|...|
T Consensus 134 ~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 134 QGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred ccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555555555544443333333444444557789999999998 45577888999999999999999999999
Q ss_pred HHHHHCCCCcHHHHHH
Q 037115 129 HLGVQNLAEPADELQK 144 (572)
Q Consensus 129 qlGIqr~AqPldrLk~ 144 (572)
+.+|...+--...|.+
T Consensus 212 ~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 212 QAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHhhCcchHHHHH
Confidence 9999988776655443
No 33
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=73.13 E-value=14 Score=30.09 Aligned_cols=72 Identities=14% Similarity=0.090 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHhcC---cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHH
Q 037115 52 PRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDF---VDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMY 128 (572)
Q Consensus 52 ~~LLERCtr~FkddERYKND~RYLKIWLkYAd~---~dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIY 128 (572)
+.++++++..-..++ ++. +|+.+|.. ..+-..-+.++...+++.......--+|..+...|+|++|.++|
T Consensus 9 i~~~~k~~~~~~~~~---~~~----~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 9 IKYYEKLLELDPTNP---NSA----YLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp HHHHHHHHHHHCGTH---HHH----HHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHCCCCh---hHH----HHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 345666655544311 222 55555553 24445555555445555555444445599999999999999999
Q ss_pred HH
Q 037115 129 HL 130 (572)
Q Consensus 129 ql 130 (572)
+.
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 75
No 34
>PRK11189 lipoprotein NlpI; Provisional
Probab=70.79 E-value=94 Score=31.54 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=43.1
Q ss_pred CcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHH
Q 037115 99 HIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADELQKSYEQFLHRMER 155 (572)
Q Consensus 99 gIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~AqPldrLk~ay~qFq~Rm~r 155 (572)
.++..++.-|--.+..++..|++.+|...|++.+..+ |.+.+..+|..++.....
T Consensus 230 ~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~--~~~~~e~~~~~~e~~~~~ 284 (296)
T PRK11189 230 ELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN--VYNFVEHRYALLELALLG 284 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHH
Confidence 3455566677778889999999999999999999765 778888888777654443
No 35
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=69.85 E-value=21 Score=30.89 Aligned_cols=56 Identities=16% Similarity=0.146 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHC-----CCCcHHHHHHHHHHHHHHHHHHHhhhH
Q 037115 103 KRSLFYQANALYYEKMKKFEEAEKMYHLGVQN-----LAEPADELQKSYEQFLHRMERHNKKRI 161 (572)
Q Consensus 103 klALFYEaWA~~LE~~g~fkeAdeIYqlGIqr-----~AqPldrLk~ay~qFq~Rm~rr~~r~~ 161 (572)
..|..|..-|-.+++.|+|.+|...|+.||.- ++.|-+.++.. |..++...+.|..
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~---yr~ki~eY~~Rae 64 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLI---YEQMINEYKRRIE 64 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHH---HHHHHHHHHHHHH
Confidence 46888999999999999999999999999986 55555555444 3444444444443
No 36
>PRK14135 recX recombination regulator RecX; Provisional
Probab=69.68 E-value=37 Score=33.93 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHhcCc--CCHHHHHHHHHHCCcchhhHHHH
Q 037115 52 PRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFV--DDPRVMLRTMEVNHIGTKRSLFY 108 (572)
Q Consensus 52 ~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~--dDP~dIF~fL~sngIGtklALFY 108 (572)
..+++.++..+. ...|-||.||.+-|+...-.. .-|..|-..|..+||...+..--
T Consensus 88 ~~~Ie~vl~~l~-~~~~ldD~~~a~~~~~~~~~~~~~g~~~I~~kL~~kGi~~~~Ie~~ 145 (263)
T PRK14135 88 EEIISEVIDKLK-EEKYIDDKEYAESYVRTNINTGDKGPRVIKQKLLQKGIEDEIIEEA 145 (263)
T ss_pred HHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHcCCCHHHHHHH
Confidence 467777777765 558899999999999876433 36889999999999998876533
No 37
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=68.82 E-value=47 Score=30.73 Aligned_cols=54 Identities=7% Similarity=0.137 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHhcC-cCCHHHHHHHHHHCCcchhhHH
Q 037115 52 PRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDF-VDDPRVMLRTMEVNHIGTKRSL 106 (572)
Q Consensus 52 ~~LLERCtr~FkddERYKND~RYLKIWLkYAd~-~dDP~dIF~fL~sngIGtklAL 106 (572)
..+++.++..+. ...|-||.||.+-|+..... -.-+..|-..|..+||-..+..
T Consensus 42 ~~~i~~vl~~l~-~~~~ldD~~~a~~~~~~~~~~~~g~~~I~~~L~~kGi~~~~I~ 96 (157)
T PRK00117 42 EEVIEAVLDRLK-EEGLLDDERFAESFVRSRARKGYGPRRIRQELRQKGVDREIIE 96 (157)
T ss_pred HHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHcCCCHHHHH
Confidence 356666666654 45899999999999999732 2358899999999999988754
No 38
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=68.28 E-value=85 Score=27.72 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCC
Q 037115 86 DDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAE 137 (572)
Q Consensus 86 dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~Aq 137 (572)
+++...|.-......-......|..++..+...|++.+|...|..++.....
T Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (234)
T TIGR02521 116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167 (234)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3455555555543322334445666677777777777777777777775433
No 39
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=66.55 E-value=9.4 Score=29.43 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHCC
Q 037115 104 RSLFYQANALYYEKMKKFEEAEKMYHLGVQNL 135 (572)
Q Consensus 104 lALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~ 135 (572)
-|..|...|..+...|+|++|...|.++|+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~ 33 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD 33 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 47889999999999999999999999999975
No 40
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=65.54 E-value=34 Score=28.13 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHC-----CCCcHHHHHHHH
Q 037115 103 KRSLFYQANALYYEKMKKFEEAEKMYHLGVQN-----LAEPADELQKSY 146 (572)
Q Consensus 103 klALFYEaWA~~LE~~g~fkeAdeIYqlGIqr-----~AqPldrLk~ay 146 (572)
.-|.++..=|.-++..|+|++|...|..|+.. +..|-...+..+
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l 52 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLL 52 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 35778888889999999999999999999874 445544444433
No 41
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=65.27 E-value=12 Score=26.68 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=20.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 037115 108 YQANALYYEKMKKFEEAEKMYHLGV 132 (572)
Q Consensus 108 YEaWA~~LE~~g~fkeAdeIYqlGI 132 (572)
|...|.++...|+|++|.++|+..+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567899999999999999999944
No 42
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=65.21 E-value=63 Score=26.37 Aligned_cols=85 Identities=8% Similarity=0.010 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHhc-CcCCHHHHHHHHHHCCcch-hhHHHHHHHHHHHHHccCHHHHHHHHH
Q 037115 52 PRFLQKCAQTFESDRRYRNDMRYLRIWLHLMD-FVDDPRVMLRTMEVNHIGT-KRSLFYQANALYYEKMKKFEEAEKMYH 129 (572)
Q Consensus 52 ~~LLERCtr~FkddERYKND~RYLKIWLkYAd-~~dDP~dIF~fL~sngIGt-klALFYEaWA~~LE~~g~fkeAdeIYq 129 (572)
..+++++++.+.+. .|.-+.+|..-.+.+.. ....+...|.-+....-+. ..+..+...|..+...+++.+|...|.
T Consensus 22 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 100 (119)
T TIGR02795 22 IQAFQAFLKKYPKS-TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQ 100 (119)
T ss_pred HHHHHHHHHHCCCc-cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHH
Confidence 45555555544322 22233444433333332 2355777777766654443 335567777888889999999999999
Q ss_pred HHHHCCCC
Q 037115 130 LGVQNLAE 137 (572)
Q Consensus 130 lGIqr~Aq 137 (572)
.-+.....
T Consensus 101 ~~~~~~p~ 108 (119)
T TIGR02795 101 QVIKRYPG 108 (119)
T ss_pred HHHHHCcC
Confidence 88887543
No 43
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=64.31 E-value=34 Score=27.68 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHC
Q 037115 103 KRSLFYQANALYYEKMKKFEEAEKMYHLGVQN 134 (572)
Q Consensus 103 klALFYEaWA~~LE~~g~fkeAdeIYqlGIqr 134 (572)
.-|..+..=|.-++..|+|++|...|..||..
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34777888899999999999999999999885
No 44
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=61.67 E-value=34 Score=26.20 Aligned_cols=48 Identities=8% Similarity=0.077 Sum_probs=35.6
Q ss_pred cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHC
Q 037115 85 VDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQN 134 (572)
Q Consensus 85 ~dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr 134 (572)
.+.+..+|+.+.... -..+..|..++.++...|++++|...|+..+..
T Consensus 13 ~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 13 YDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345667788877777 446666777777888899999999999888764
No 45
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=61.64 E-value=1.5e+02 Score=33.07 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCCcHHHHHHHHH
Q 037115 87 DPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADELQKSYE 147 (572)
Q Consensus 87 DP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~AqPldrLk~ay~ 147 (572)
.+..+|..... +.......|...|.++...|++++|...|+.++.- ++....+..++.
T Consensus 526 eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l-~~~~~e~~~a~~ 583 (615)
T TIGR00990 526 EAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL-ARTEGELVQAIS 583 (615)
T ss_pred HHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-hccHHHHHHHHH
Confidence 45556655444 34566677888999999999999999999999876 344444444443
No 46
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=61.28 E-value=77 Score=28.09 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=69.4
Q ss_pred hHhHHHHHHHHHhhcCCCC----CCcHHHHHHH-HHHHhhCCCCcccCchHHHHHHHHHHhccccccccchHHHHHHHHH
Q 037115 7 VYDTFFSSLIQDIKSYSGT----DPLLPWLQGI-KKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHL 81 (572)
Q Consensus 7 ~~~~~fssLes~I~sYsGD----DPLdpWlrYI-kWiEEsyPsGg~ks~L~~LLERCtr~FkddERYKND~RYLKIWLkY 81 (572)
..+.....+...+.-|.|+ .+-..|..-. .++. +....++++++........|..=.++++-|+..
T Consensus 21 ~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 21 DPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLR---------ELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp -HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHH---------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHH---------HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 3455667888899999863 1223444322 2232 234678888888777888888777777777665
Q ss_pred hcCcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHC-----CCCcHHHHHHHHHHH
Q 037115 82 MDFVDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQN-----LAEPADELQKSYEQF 149 (572)
Q Consensus 82 Ad~~dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr-----~AqPldrLk~ay~qF 149 (572)
--+. -.+|...-..|...|++.+|.++|+.-.+. +..|-..+..-|+..
T Consensus 92 dP~~-------------------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~i 145 (146)
T PF03704_consen 92 DPYD-------------------EEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYREI 145 (146)
T ss_dssp STT--------------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHHH
T ss_pred CCCC-------------------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHh
Confidence 4332 124555556788899999999999876554 667888888777653
No 47
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=60.94 E-value=29 Score=39.16 Aligned_cols=52 Identities=31% Similarity=0.505 Sum_probs=44.2
Q ss_pred HHCCcch-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCC-----------CCcHHHHHHHHH
Q 037115 96 EVNHIGT-KRSLFYQANALYYEKMKKFEEAEKMYHLGVQNL-----------AEPADELQKSYE 147 (572)
Q Consensus 96 ~sngIGt-klALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~-----------AqPldrLk~ay~ 147 (572)
...|.-. .+|-.|..+|.+|-.+|+|++|.++|+..|++. +-|+..|-..|.
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~ 420 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE 420 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH
Confidence 5567777 889999999999999999999999999999985 556777766663
No 48
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=59.37 E-value=64 Score=23.22 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHC
Q 037115 86 DDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQN 134 (572)
Q Consensus 86 dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr 134 (572)
......|...... +......|..+|.++...|++++|...|...+..
T Consensus 51 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 51 EEALEDYEKALEL--DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHhC--CCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 3445555554443 3333356677777888888888888888777654
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=59.24 E-value=1e+02 Score=32.61 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=12.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHH
Q 037115 110 ANALYYEKMKKFEEAEKMYHLGV 132 (572)
Q Consensus 110 aWA~~LE~~g~fkeAdeIYqlGI 132 (572)
.+|.++++.|+.++|.++|++|+
T Consensus 375 ~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 375 MAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555555555555555543
No 50
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=57.92 E-value=25 Score=24.17 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHC
Q 037115 105 SLFYQANALYYEKMKKFEEAEKMYHLGVQN 134 (572)
Q Consensus 105 ALFYEaWA~~LE~~g~fkeAdeIYqlGIqr 134 (572)
|.-+...|.+|-..|+|.+|..+|+..+..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 556777899999999999999999988764
No 51
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=56.85 E-value=52 Score=25.50 Aligned_cols=53 Identities=11% Similarity=0.066 Sum_probs=39.5
Q ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCCcHHHH
Q 037115 88 PRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADEL 142 (572)
Q Consensus 88 P~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~AqPldrL 142 (572)
...++..+... ......+|...|.++...|+|.+|.+.|+..++..-.+.+..
T Consensus 14 A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 14 ALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 34444444443 445777888899999999999999999999998776555543
No 52
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=56.65 E-value=44 Score=28.73 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHC
Q 037115 104 RSLFYQANALYYEKMKKFEEAEKMYHLGVQN 134 (572)
Q Consensus 104 lALFYEaWA~~LE~~g~fkeAdeIYqlGIqr 134 (572)
-|.-|..=|.-+++.|+|.+|...|+.||.-
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4677888899999999999999999999985
No 53
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=56.36 E-value=29 Score=23.57 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHCC
Q 037115 105 SLFYQANALYYEKMKKFEEAEKMYHLGVQNL 135 (572)
Q Consensus 105 ALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~ 135 (572)
|..|-.-|..+...|+|.+|..-|+++|+-.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 3456777889999999999999999998753
No 54
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=55.75 E-value=31 Score=30.52 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Q 037115 107 FYQANALYYEKMKKFEEAEKMYHLG 131 (572)
Q Consensus 107 FYEaWA~~LE~~g~fkeAdeIYqlG 131 (572)
+|++.+.++.+.|.+++|..++-.-
T Consensus 84 l~~~~~~l~~k~~~~~~Al~~~l~~ 108 (140)
T smart00299 84 LYEEAVELYKKDGNFKDAIVTLIEH 108 (140)
T ss_pred cHHHHHHHHHhhcCHHHHHHHHHHc
Confidence 7899999999999999999887653
No 55
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=53.90 E-value=23 Score=22.94 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=21.8
Q ss_pred cCHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHH
Q 037115 119 KKFEEAEKMYHLGVQNLAEPADELQKSYEQFLH 151 (572)
Q Consensus 119 g~fkeAdeIYqlGIqr~AqPldrLk~ay~qFq~ 151 (572)
|+++.|..||++|+.... =...|-..|-+|+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHHHHHh
Confidence 467788888888887764 34456666666653
No 56
>PRK14137 recX recombination regulator RecX; Provisional
Probab=52.05 E-value=96 Score=30.86 Aligned_cols=93 Identities=13% Similarity=0.071 Sum_probs=53.0
Q ss_pred HHHHHHHHHhccccccccchHHHHHHHHHhcCcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 037115 53 RFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGV 132 (572)
Q Consensus 53 ~LLERCtr~FkddERYKND~RYLKIWLkYAd~~dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGI 132 (572)
.+++.+|.++.. ..|-||.||.+.+.. ..-.-|..|-..|..+||...+..= +.+.+ +...-++.|..++++-.
T Consensus 72 e~Ie~vI~rL~e-~gyLDD~rfAe~~~~--~k~~Gp~rI~~eL~qKGI~~~lI~~--al~~~-d~ede~e~a~~l~~KK~ 145 (195)
T PRK14137 72 ALVTEVLERVQE-LGYQDDAQVARAENS--RRGVGALRVRQTLRRRGVEETLIEE--TLAAR-DPQEEQQEARNLLERRW 145 (195)
T ss_pred HHHHHHHHHHHH-cCCCCHHHHHHHHHH--hcCchHHHHHHHHHHcCCCHHHHHH--HHHhc-CchhHHHHHHHHHHHhc
Confidence 444555544333 389999999998622 2223688999999999999877652 22222 11224456666666554
Q ss_pred HCCCCcHHHHHHHHHHHHHH
Q 037115 133 QNLAEPADELQKSYEQFLHR 152 (572)
Q Consensus 133 qr~AqPldrLk~ay~qFq~R 152 (572)
...+. ....+++..+|+.|
T Consensus 146 ~~~~~-~~~~k~K~~~~L~r 164 (195)
T PRK14137 146 SSFAR-KRDPRASAYAFLAR 164 (195)
T ss_pred cccCc-chhHHHHHHHHHHH
Confidence 43221 12333444445543
No 57
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=52.03 E-value=30 Score=27.34 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHC
Q 037115 103 KRSLFYQANALYYEKMKKFEEAEKMYHLGVQN 134 (572)
Q Consensus 103 klALFYEaWA~~LE~~g~fkeAdeIYqlGIqr 134 (572)
.+|..|...|..+...|+|++|...|+..++-
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35778899999999999999999999999976
No 58
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=51.57 E-value=72 Score=26.58 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHC
Q 037115 103 KRSLFYQANALYYEKMKKFEEAEKMYHLGVQN 134 (572)
Q Consensus 103 klALFYEaWA~~LE~~g~fkeAdeIYqlGIqr 134 (572)
.-|.++..=|.-.+..|+|++|...|..||..
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34677888889999999999999999999885
No 59
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=51.11 E-value=3.2e+02 Score=33.35 Aligned_cols=140 Identities=11% Similarity=0.077 Sum_probs=87.2
Q ss_pred hhHhHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHhhCCCCccc--CchHHHHHHHHHHhccccccccc--hHHHHHHHH-
Q 037115 6 AVYDTFFSSLIQDIKSYSGTDPLLPWLQGIKKMKDSLPSKLLK--EKLPRFLQKCAQTFESDRRYRND--MRYLRIWLH- 80 (572)
Q Consensus 6 ~~~~~~fssLes~I~sYsGDDPLdpWlrYIkWiEEsyPsGg~k--s~L~~LLERCtr~FkddERYKND--~RYLKIWLk- 80 (572)
..+......|+.++..- +.++..|......+.+.-+.. +.|.....++..+|...-.-+-| -+|+++|-.
T Consensus 396 e~~~vI~~~l~~~ls~~-----~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~ 470 (881)
T KOG0128|consen 396 EEITVIVQNLEKDLSMT-----VELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQV 470 (881)
T ss_pred cchhhHHHHHHHHHHHH-----HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 33444444555555441 235566666666666643322 23444444444443322111123 356788854
Q ss_pred HhcC---cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCCc--HHHHHHHHHHHHH
Q 037115 81 LMDF---VDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEP--ADELQKSYEQFLH 151 (572)
Q Consensus 81 YAd~---~dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~AqP--ldrLk~ay~qFq~ 151 (572)
||.+ .+..+.|..+....+ |..+|--|.+|..+--..|+...|..+++.....--.| ......-|..|++
T Consensus 471 E~sl~~nmd~~R~iWn~imty~-~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Er 545 (881)
T KOG0128|consen 471 EASLLKNMDKAREIWNFIMTYG-GGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFER 545 (881)
T ss_pred HHHHhhchhhhhHhhhccccCC-cchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHh
Confidence 3444 456789999988877 44566688888887777899999999999999999999 6666777777664
No 60
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=51.00 E-value=76 Score=37.11 Aligned_cols=80 Identities=9% Similarity=0.006 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHhccccccccchHHHHHHHHHhcC------cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHH
Q 037115 51 LPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDF------VDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEA 124 (572)
Q Consensus 51 L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~------~dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeA 124 (572)
-..+|++|+.. +|-+...|+.|+.. .+++...+..++. +....+.++-..|..|...|+|++|
T Consensus 105 a~~~l~~~~~~---------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~A 173 (694)
T PRK15179 105 GLAVWRGIHQR---------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQA 173 (694)
T ss_pred HHHHHHHHHhh---------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHHH
Confidence 35777887777 45566777777764 4567777777665 5668888999999999999999999
Q ss_pred HHHHHHHHHCCCCcHHH
Q 037115 125 EKMYHLGVQNLAEPADE 141 (572)
Q Consensus 125 deIYqlGIqr~AqPldr 141 (572)
..+|++-+..++.+-+-
T Consensus 174 ~~~y~~~~~~~p~~~~~ 190 (694)
T PRK15179 174 DACFERLSRQHPEFENG 190 (694)
T ss_pred HHHHHHHHhcCCCcHHH
Confidence 99999999977664443
No 61
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=50.08 E-value=40 Score=40.92 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 037115 106 LFYQANALYYEKMKKFEEAEKMYHLGVQ 133 (572)
Q Consensus 106 LFYEaWA~~LE~~g~fkeAdeIYqlGIq 133 (572)
.+|..|++|+|+.|.++.|..+|.++-.
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 7899999999999999999999998754
No 62
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=50.05 E-value=95 Score=27.87 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 037115 87 DPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGV 132 (572)
Q Consensus 87 DP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGI 132 (572)
++.+-...|....-..-.+.+++--+.++...|++.+|...|+.+|
T Consensus 100 ~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 100 QYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 4444444454433334456677778888888888888888888764
No 63
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=49.41 E-value=83 Score=36.41 Aligned_cols=95 Identities=15% Similarity=0.397 Sum_probs=67.4
Q ss_pred CchHHHHHHHHHHhccccccccchHHHHHHHHHhcCc----CCHHHHHHHHHH--CCcchh--hHHHHHHHHHHHHHccC
Q 037115 49 EKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFV----DDPRVMLRTMEV--NHIGTK--RSLFYQANALYYEKMKK 120 (572)
Q Consensus 49 s~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~----dDP~dIF~fL~s--ngIGtk--lALFYEaWA~~LE~~g~ 120 (572)
..-..++|||++.|- +=|-+|+.|..++ .+|.+|..-..+ .-||+. ..-||..|=.+...+++
T Consensus 96 ~~s~~Vfergv~aip---------~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks 166 (577)
T KOG1258|consen 96 ENSVKVFERGVQAIP---------LSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKS 166 (577)
T ss_pred HHHHHHHHHHHHhhh---------hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhcccc
Confidence 345789999999984 4488999999875 467776554322 224554 35677777777788999
Q ss_pred HHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHH
Q 037115 121 FEEAEKMYHLGVQNLAEPADELQKSYEQFLHRMER 155 (572)
Q Consensus 121 fkeAdeIYqlGIqr~AqPldrLk~ay~qFq~Rm~r 155 (572)
++.--.||.+=|.. |+.-+-.-|..|..++..
T Consensus 167 ~k~v~~iyeRilei---P~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 167 WKRVANIYERILEI---PLHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HHHHHHHHHHHHhh---hhhHhHHHHHHHHHHHhc
Confidence 99999999998875 555555555555555554
No 64
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=49.27 E-value=1.6e+02 Score=31.02 Aligned_cols=49 Identities=8% Similarity=0.066 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCC
Q 037115 86 DDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLA 136 (572)
Q Consensus 86 dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~A 136 (572)
.++...|..+.. +.-..+..|-..|..|...|+|.+|...|+.++....
T Consensus 53 ~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 53 TEAVADANKAIE--LDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 345555555554 4456677788889999999999999999999998753
No 65
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=47.21 E-value=97 Score=33.57 Aligned_cols=64 Identities=11% Similarity=0.237 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcC------cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCCc
Q 037115 73 RYLRIWLHLMDF------VDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEP 138 (572)
Q Consensus 73 RYLKIWLkYAd~------~dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~AqP 138 (572)
.....|+.++.. .++...+|..|...... .+..|...+..+...|++++|.+.|+..+.....+
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 736 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK--AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS 736 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC--ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Confidence 334555555543 34566788887776644 45556667788889999999999999999876555
No 66
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=46.86 E-value=2.7e+02 Score=28.18 Aligned_cols=123 Identities=15% Similarity=0.190 Sum_probs=70.9
Q ss_pred hhHhHHHHHHHHHhhcCC-CCCCcHHHHHHHHHHHhhCCCCcccCchHHHHHHHHHHhccccc-cccchHHHHHHHHHhc
Q 037115 6 AVYDTFFSSLIQDIKSYS-GTDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRR-YRNDMRYLRIWLHLMD 83 (572)
Q Consensus 6 ~~~~~~fssLes~I~sYs-GDDPLdpWlrYIkWiEEsyPsGg~ks~L~~LLERCtr~FkddER-YKND~RYLKIWLkYAd 83 (572)
...+++.+.|...|.+.. .+.+++.-+..|+-+.+.-|.. ....+.+-.+.+|...+. +---.=..++|+.=..
T Consensus 135 ~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~----a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~ 210 (278)
T PF08631_consen 135 FDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPEL----AAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQS 210 (278)
T ss_pred CChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHH----HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCC
Confidence 345666677777777776 6788888888888887766532 223333444444433321 2222223344443322
Q ss_pred C--cCC--HHHH---HH---HHHHCCcchh-----hHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 037115 84 F--VDD--PRVM---LR---TMEVNHIGTK-----RSLFYQANALYYEKMKKFEEAEKMYHLGVQ 133 (572)
Q Consensus 84 ~--~dD--P~dI---F~---fL~sngIGtk-----lALFYEaWA~~LE~~g~fkeAdeIYqlGIq 133 (572)
- .+. -..+ +. ......++.. ++++|.. |.-.++.++|.+|..-|++++.
T Consensus 211 ~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~-~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 211 KDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNK-GKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred ccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHHHhhcCHHHHHHHHHHHHH
Confidence 1 111 1222 22 2233344433 4788865 7777889999999999999875
No 67
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=44.80 E-value=84 Score=26.67 Aligned_cols=52 Identities=17% Similarity=0.205 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHC-----CCCcH----HHHHHHHHHHHHHHHHH
Q 037115 105 SLFYQANALYYEKMKKFEEAEKMYHLGVQN-----LAEPA----DELQKSYEQFLHRMERH 156 (572)
Q Consensus 105 ALFYEaWA~~LE~~g~fkeAdeIYqlGIqr-----~AqPl----drLk~ay~qFq~Rm~rr 156 (572)
|.+...=|.-.+..|+|++|...|..||.- +-+|- +.|..+..+++.|.+..
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RAE~L 66 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSRAEEL 66 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677888999999999999999874 22333 34555566666665443
No 68
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=43.79 E-value=76 Score=29.09 Aligned_cols=63 Identities=19% Similarity=0.310 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHCCc-chhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHH
Q 037115 87 DPRVMLRTMEVNHI-GTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADELQKSYEQFLH 151 (572)
Q Consensus 87 DP~dIF~fL~sngI-GtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~AqPldrLk~ay~qFq~ 151 (572)
.+..+|.--...|. |....--|+.+|..|-..|++++|..+++.++... |-+.+..+.+-|..
T Consensus 19 ~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 19 EAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHH
Confidence 46789999888874 66677889999999999999999999999999754 66566666666654
No 69
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=42.73 E-value=1.2e+02 Score=23.88 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 037115 103 KRSLFYQANALYYEKMKKFEEAEKMYHLGVQ 133 (572)
Q Consensus 103 klALFYEaWA~~LE~~g~fkeAdeIYqlGIq 133 (572)
.++..|-..|.++...|++++|.+.|++.++
T Consensus 44 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 44 DTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4588899999999999999999999999875
No 70
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=42.66 E-value=1.6e+02 Score=35.86 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHhcCcCCHHHHHHHHHH---CCcc-hhhHHHHHHHHHHHHHccCHHHHHHH
Q 037115 52 PRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVDDPRVMLRTMEV---NHIG-TKRSLFYQANALYYEKMKKFEEAEKM 127 (572)
Q Consensus 52 ~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~dDP~dIF~fL~s---ngIG-tklALFYEaWA~~LE~~g~fkeAdeI 127 (572)
..++.+++.+|.+..+|.. .+.+|.+|..+..+-.++|..+.+ ..|| .+.+.+|+--=.+|...++|.++.+|
T Consensus 169 ~~m~~KAV~~~i~~kq~~~---~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 169 ITYLKKAIYRFIKKKQYVG---IEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred HHHHHHHHHHHHhhhcchH---HHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 5788899999998888864 789999999997665555444332 2333 55666777766788889999999999
Q ss_pred HHHHHHCCC
Q 037115 128 YHLGVQNLA 136 (572)
Q Consensus 128 YqlGIqr~A 136 (572)
|++-+....
T Consensus 246 LK~iL~~~~ 254 (906)
T PRK14720 246 LKKILEHDN 254 (906)
T ss_pred HHHHHhcCC
Confidence 999998643
No 71
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=42.06 E-value=1.1e+02 Score=30.13 Aligned_cols=112 Identities=21% Similarity=0.238 Sum_probs=64.3
Q ss_pred cHHHHHHHHHHHhhCCCCcccCchHHHHHHHHHHhccccccccchHHHHHHHHHhcCc--CCHHHHHHHHHHCCcchhhH
Q 037115 28 LLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFV--DDPRVMLRTMEVNHIGTKRS 105 (572)
Q Consensus 28 LdpWlrYIkWiEEsyPsGg~ks~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~--dDP~dIF~fL~sngIGtklA 105 (572)
-..|..+..+..+. | ....=..+++++++..-+++. .+.--+|+. ++.- ...+.++..+.... ..-+
T Consensus 146 ~~~~~~~a~~~~~~---G-~~~~A~~~~~~al~~~P~~~~----~~~~l~~~l-i~~~~~~~~~~~l~~~~~~~--~~~~ 214 (280)
T PF13429_consen 146 ARFWLALAEIYEQL---G-DPDKALRDYRKALELDPDDPD----ARNALAWLL-IDMGDYDEAREALKRLLKAA--PDDP 214 (280)
T ss_dssp HHHHHHHHHHHHHC---C-HHHHHHHHHHHHHHH-TT-HH----HHHHHHHHH-CTTCHHHHHHHHHHHHHHH---HTSC
T ss_pred HHHHHHHHHHHHHc---C-CHHHHHHHHHHHHHcCCCCHH----HHHHHHHHH-HHCCChHHHHHHHHHHHHHC--cCHH
Confidence 45677776666542 2 222225777777777666543 344445553 3221 22445665554443 4445
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHCCC-CcHHHHHHHHHHHHHH
Q 037115 106 LFYQANALYYEKMKKFEEAEKMYHLGVQNLA-EPADELQKSYEQFLHR 152 (572)
Q Consensus 106 LFYEaWA~~LE~~g~fkeAdeIYqlGIqr~A-qPldrLk~ay~qFq~R 152 (572)
.+|..+|..+...|++++|..+|++.+..+. .|.-.+ .|...+..
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~--~~a~~l~~ 260 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLL--AYADALEQ 260 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHH--HHHHHHT-
T ss_pred HHHHHHHHHhcccccccccccccccccccccccccccc--cccccccc
Confidence 6888999999999999999999999998544 444333 44444433
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.87 E-value=1.8e+02 Score=34.11 Aligned_cols=130 Identities=12% Similarity=0.161 Sum_probs=74.3
Q ss_pred CCccchhHhHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHhhCCCCcccCchHHHHHHHHHHhccccccccchHH------
Q 037115 1 MAKSDAVYDTFFSSLIQDIKSYSGTDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRY------ 74 (572)
Q Consensus 1 ~~~~~~~~~~~fssLes~I~sYsGDDPLdpWlrYIkWiEEsyPsGg~ks~L~~LLERCtr~FkddERYKND~RY------ 74 (572)
|++....-......+.++|.-+..++-.+-=..-+..+...+|.. ...+..|+-.....++|..=.-.
T Consensus 1 ms~~~~~~~~~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd------~~a~~cKvValIq~~ky~~ALk~ikk~~~ 74 (652)
T KOG2376|consen 1 MSKEKSGGSDNLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDD------EDAIRCKVVALIQLDKYEDALKLIKKNGA 74 (652)
T ss_pred CCCcccCCcccHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCc------HhhHhhhHhhhhhhhHHHHHHHHHHhcch
Confidence 344333333333555666677766666777777777777777754 23445555555555555433322
Q ss_pred ---------HHHHHHHhcC-cCCHHHHHHHHHHCCcchhhHH-HHHHHHHHHHHccCHHHHHHHHHHHHHCCCCcHHHH
Q 037115 75 ---------LRIWLHLMDF-VDDPRVMLRTMEVNHIGTKRSL-FYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADEL 142 (572)
Q Consensus 75 ---------LKIWLkYAd~-~dDP~dIF~fL~sngIGtklAL-FYEaWA~~LE~~g~fkeAdeIYqlGIqr~AqPldrL 142 (572)
=|.+|.|--. .+++...+. +..++.- .-+=.|+++-..++|++|..||+.=+.++-.-.+..
T Consensus 75 ~~~~~~~~fEKAYc~Yrlnk~Dealk~~~------~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~ 147 (652)
T KOG2376|consen 75 LLVINSFFFEKAYCEYRLNKLDEALKTLK------GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEE 147 (652)
T ss_pred hhhcchhhHHHHHHHHHcccHHHHHHHHh------cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHH
Confidence 2333333211 222333333 3333333 556689999999999999999999888775544443
No 73
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=41.55 E-value=38 Score=22.35 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHC
Q 037115 105 SLFYQANALYYEKMKKFEEAEKMYHLGVQN 134 (572)
Q Consensus 105 ALFYEaWA~~LE~~g~fkeAdeIYqlGIqr 134 (572)
|+|..+++. ...|++.+|.++|+.=|.+
T Consensus 2 a~~~~a~~~--~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCY--YKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHH--HHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHccCHHHHHHHHHHHHHH
Confidence 456665554 4589999999999887654
No 74
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=41.11 E-value=49 Score=28.04 Aligned_cols=45 Identities=20% Similarity=0.140 Sum_probs=38.4
Q ss_pred HHHHHHHHCCcchhhHHHHHHHHHH-HHHccCHHHHHHHHHHHHHC
Q 037115 90 VMLRTMEVNHIGTKRSLFYQANALY-YEKMKKFEEAEKMYHLGVQN 134 (572)
Q Consensus 90 dIF~fL~sngIGtklALFYEaWA~~-LE~~g~fkeAdeIYqlGIqr 134 (572)
.|..|.+..=||.++|.++..|... .+.++++..|..=|-+|+.+
T Consensus 18 ~v~~FF~~DPlGqkIa~l~kdw~~~~~~~r~KiR~~L~ey~k~L~~ 63 (64)
T PF05596_consen 18 EVRNFFYEDPLGQKIAQLAKDWNEICQEVRKKIRAALAEYCKGLKN 63 (64)
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4778888999999999999999765 56689999999999888865
No 75
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=40.17 E-value=3.3e+02 Score=25.77 Aligned_cols=84 Identities=11% Similarity=0.018 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHhcC---------cCCHHHHHHHHHHCCcchhh---------------HHH
Q 037115 52 PRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDF---------VDDPRVMLRTMEVNHIGTKR---------------SLF 107 (572)
Q Consensus 52 ~~LLERCtr~FkddERYKND~RYLKIWLkYAd~---------~dDP~dIF~fL~sngIGtkl---------------ALF 107 (572)
..++++.++.+-+... ..+..|+.-++.|-.. ...+...|.-+....-.... +..
T Consensus 90 ~~~~~~~l~~~p~~~~-~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~ 168 (235)
T TIGR03302 90 IAAADRFIRLHPNHPD-ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGK 168 (235)
T ss_pred HHHHHHHHHHCcCCCc-hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHH
Confidence 5677777766654432 2234555555554321 12234444444333322221 122
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHCCC
Q 037115 108 YQANALYYEKMKKFEEAEKMYHLGVQNLA 136 (572)
Q Consensus 108 YEaWA~~LE~~g~fkeAdeIYqlGIqr~A 136 (572)
+.++|.++...|++.+|...|+..+....
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p 197 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYP 197 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCC
Confidence 34678889999999999999999998753
No 76
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=39.41 E-value=2.4e+02 Score=24.05 Aligned_cols=48 Identities=13% Similarity=0.032 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCC
Q 037115 86 DDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNL 135 (572)
Q Consensus 86 dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~ 135 (572)
+.+..+|.-.. .++.....+|-..|.++...|++++|...|+.+++..
T Consensus 68 ~~A~~~~~~~~--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 68 EEAIDAYALAA--ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHH--hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 34555555443 4567777888888889999999999999999999875
No 77
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=38.05 E-value=3.1e+02 Score=24.93 Aligned_cols=46 Identities=4% Similarity=-0.002 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHC
Q 037115 87 DPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQN 134 (572)
Q Consensus 87 DP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr 134 (572)
++...|..... +....+..|-.++..+...|++++|...|+..|..
T Consensus 76 ~A~~~y~~Al~--l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 76 TAINFYGHALM--LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHh--cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444444443 23344444444455555555555555555555554
No 78
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=38.00 E-value=2.6e+02 Score=23.91 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhc-CcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCC
Q 037115 72 MRYLRIWLHLMD-FVDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAE 137 (572)
Q Consensus 72 ~RYLKIWLkYAd-~~dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~Aq 137 (572)
..|...+..+.. ...++..+|..+... +.....+|...|..+...|++.+|..+|+.++...-.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344444444432 345677777777664 4567788889999999999999999999999987643
No 79
>PRK12370 invasion protein regulator; Provisional
Probab=37.66 E-value=2.9e+02 Score=30.76 Aligned_cols=135 Identities=10% Similarity=0.068 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHhhCCCCcccCchHHHHHHHHHHhccccccccchHHHHHHHHHhcC-c
Q 037115 7 VYDTFFSSLIQDIKSYSGTDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDF-V 85 (572)
Q Consensus 7 ~~~~~fssLes~I~sYsGDDPLdpWlrYIkWiEEsyPsGg~ks~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~-~ 85 (572)
.+++....+...|+....+-..-.++-.+......+-.. ...++++++.--.+. ...|...|+.|..- .
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eA------i~~~~~Al~l~P~~~----~~~~~~~~~~~~~g~~ 422 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEA------LQTINECLKLDPTRA----AAGITKLWITYYHTGI 422 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH------HHHHHHHHhcCCCCh----hhHHHHHHHHHhccCH
Q ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHH
Q 037115 86 DDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADELQKSYEQFLHR 152 (572)
Q Consensus 86 dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~AqPldrLk~ay~qFq~R 152 (572)
+++...|.-+.... ....+..|.-.|.+|...|++++|.+.|...+.........+..-+..+...
T Consensus 423 eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 423 DDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
No 80
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=37.58 E-value=1.7e+02 Score=27.02 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCC
Q 037115 104 RSLFYQANALYYEKMKKFEEAEKMYHLGVQNLA 136 (572)
Q Consensus 104 lALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~A 136 (572)
.+..|..+|..+...|+|++|...|+.+++...
T Consensus 71 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 71 RSYILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 356788999999999999999999999999643
No 81
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=37.08 E-value=36 Score=37.27 Aligned_cols=128 Identities=13% Similarity=0.124 Sum_probs=79.3
Q ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHHHh--hC--------CCCcc--------cCchHHHHHHHHHHhccccccccchHH
Q 037115 13 SSLIQDIKSYSGTDPLLPWLQGIKKMKD--SL--------PSKLL--------KEKLPRFLQKCAQTFESDRRYRNDMRY 74 (572)
Q Consensus 13 ssLes~I~sYsGDDPLdpWlrYIkWiEE--sy--------PsGg~--------ks~L~~LLERCtr~FkddERYKND~RY 74 (572)
+.||..++.- .--|.-|++||+.=.. .. -.++. .....-++.|.+.+|-.|
T Consensus 38 r~fE~rL~rr--~~klnDf~~YI~yE~nleklRaKR~Kr~~v~~K~s~sD~sipqk~~f~~~R~tnkff~D--------- 106 (435)
T COG5191 38 RKFELRLQRR--EKKLNDFMRYIKYECNLEKLRAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTNKFFND--------- 106 (435)
T ss_pred HHHHHHHhcc--cchHHHHHHHHHHHhhHHHHHHHHHHHHHhcccccchhccccceeeEeeehhhhcCCCC---------
Confidence 5666666654 5567888999986321 11 01111 112234677777777666
Q ss_pred HHHHHHHhcCcC------CHHHHHHHHHHCCcchhhHHHHHH-HHHHHHHccCHHHHHHHHHHHHHCCCCcHHHHHHHHH
Q 037115 75 LRIWLHLMDFVD------DPRVMLRTMEVNHIGTKRSLFYQA-NALYYEKMKKFEEAEKMYHLGVQNLAEPADELQKSYE 147 (572)
Q Consensus 75 LKIWLkYAd~~d------DP~dIF~fL~sngIGtklALFYEa-WA~~LE~~g~fkeAdeIYqlGIqr~AqPldrLk~ay~ 147 (572)
+++|..|+.++. .-..||..+..+.= .-+.+|+- -|.-|+..++++-|..+|+.|++.+.+ .-+|.-.|=
T Consensus 107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP--~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~-~p~iw~eyf 183 (435)
T COG5191 107 PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHP--LNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR-SPRIWIEYF 183 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC-CchHHHHHH
Confidence 589999998753 34455555544321 11334443 456678899999999999999998743 456666776
Q ss_pred HHHHHHH
Q 037115 148 QFLHRME 154 (572)
Q Consensus 148 qFq~Rm~ 154 (572)
.|+.-..
T Consensus 184 r~El~yi 190 (435)
T COG5191 184 RMELMYI 190 (435)
T ss_pred HHHHHHH
Confidence 6665443
No 82
>PRK09857 putative transposase; Provisional
Probab=36.19 E-value=1.9e+02 Score=30.30 Aligned_cols=79 Identities=13% Similarity=0.076 Sum_probs=44.6
Q ss_pred chHHHHHHHHHHhccccccccchHHHHHHHHHhcCc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHH
Q 037115 50 KLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFV---DDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEK 126 (572)
Q Consensus 50 ~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~---dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAde 126 (572)
.|..++......+... +.++ .+++.|+.|+-.. +++.++++.+.... .+...--..+|..+++.|.-++|.+
T Consensus 187 dl~~~~~~l~~ll~~~--~~~~-~~~~~ll~Yi~~~~~~~~~~~~~~~l~~~~--~~~~e~iMTiAEqL~qeG~qe~~~~ 261 (292)
T PRK09857 187 DLMGLVEQMACLLSSG--YAND-RQIKGLFNYILQTGDAVRFNDFIDGVAERS--PKHKESLMTIAERLRQEGEQSKALH 261 (292)
T ss_pred hHHHHHHHHHHHHHhc--cCCH-HHHHHHHHHHhhccccchHHHHHHHHHHhC--ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554443 3333 5588999998442 35677887776542 2233334578888877775544433
Q ss_pred HHHHHHH
Q 037115 127 MYHLGVQ 133 (572)
Q Consensus 127 IYqlGIq 133 (572)
|-+.-+.
T Consensus 262 ia~~ml~ 268 (292)
T PRK09857 262 IAKIMLE 268 (292)
T ss_pred HHHHHHH
Confidence 3333333
No 83
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.44 E-value=2.3e+02 Score=35.16 Aligned_cols=61 Identities=11% Similarity=0.131 Sum_probs=42.7
Q ss_pred cccchHHHHHHHHHhcCcCCHHHHHHHHH-----------H-CCcc---hhhHHHHHHHHHHHHHccCHHHHHHHHH
Q 037115 68 YRNDMRYLRIWLHLMDFVDDPRVMLRTME-----------V-NHIG---TKRSLFYQANALYYEKMKKFEEAEKMYH 129 (572)
Q Consensus 68 YKND~RYLKIWLkYAd~~dDP~dIF~fL~-----------s-ngIG---tklALFYEaWA~~LE~~g~fkeAdeIYq 129 (572)
|.+=.|++-+|++|-+...++. +|..+. . .+++ ..++.+|++||.+|-.+|.+.-|.+.+.
T Consensus 614 agsv~k~v~~w~~~~~~~~~~~-~y~~~~e~l~~~~~~l~~~~~~~~~s~~l~~~~~~yanllasQG~~~~A~~~l~ 689 (1049)
T KOG0307|consen 614 AGSVDKLVEIWLKALDLELAPT-SYQDLAEDLMELTLKLAQFSANKTYSAGLAKKFSEYANLLASQGALAAAMSFLP 689 (1049)
T ss_pred ccChhhhHHHHHHhcccccchH-HHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHhcChHHHHHhhcC
Confidence 5677899999999998863332 222211 1 2222 2377899999999999999999976654
No 84
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=35.17 E-value=2.9e+02 Score=27.32 Aligned_cols=90 Identities=14% Similarity=0.237 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHhccccccccchHHHHHHHHHhcCc-CCHHHHHHHHHHCCcchhhHHHHHHHHHHHH---HccCHHHHHH
Q 037115 51 LPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFV-DDPRVMLRTMEVNHIGTKRSLFYQANALYYE---KMKKFEEAEK 126 (572)
Q Consensus 51 L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~-dDP~dIF~fL~sngIGtklALFYEaWA~~LE---~~g~fkeAde 126 (572)
+-.+|.+|.. ..|-||.||...|+.=-... --|..|-+-|..+||....-. ..|+ .......|.+
T Consensus 54 Ie~Vi~~l~~-----~~~ldD~~fAe~~i~~r~~~g~G~~rl~qeL~qkGi~~~~Ie------~aL~~~~~~~~~~~a~~ 122 (174)
T COG2137 54 IEEVIDRLAE-----EGYLDDTRFAEAYIRSRSRKGKGPARLKQELKQKGIDDEIIE------EALELIDEEDEQERARK 122 (174)
T ss_pred HHHHHHHHHH-----cCcccHHHHHHHHHHHHHhcccChHHHHHHHHHcCCCHHHHH------HHHhccchHHHHHHHHH
Confidence 3444554444 49999999999999876544 469999999999998876432 2222 1223345555
Q ss_pred HHHHHHHCCCC-cHHHHHHHHHHHHH
Q 037115 127 MYHLGVQNLAE-PADELQKSYEQFLH 151 (572)
Q Consensus 127 IYqlGIqr~Aq-PldrLk~ay~qFq~ 151 (572)
++..=..+... |-..++.+-..|+.
T Consensus 123 ~~~kk~~~~~~~~~~~~k~Ki~r~L~ 148 (174)
T COG2137 123 VLRKKFKRENKPPDKKEKAKIQRFLL 148 (174)
T ss_pred HHHHHhCccccCcchhHHHHHHHHHH
Confidence 55554444432 34455666666655
No 85
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=35.15 E-value=3.5e+02 Score=24.62 Aligned_cols=52 Identities=12% Similarity=-0.055 Sum_probs=42.8
Q ss_pred CcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCC
Q 037115 84 FVDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAE 137 (572)
Q Consensus 84 ~~dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~Aq 137 (572)
..+++...|..+.... -..+.+|...|..+...|++++|...|+.++.....
T Consensus 39 ~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 39 DYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred CHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3566778888876554 457888999999999999999999999999987543
No 86
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=34.65 E-value=2.3e+02 Score=34.54 Aligned_cols=129 Identities=14% Similarity=0.131 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHhhCCCCcccCchHHHHHHHHHHhccccccccchHHHHHHHHHhcCcCCH
Q 037115 9 DTFFSSLIQDIKSYSGTDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVDDP 88 (572)
Q Consensus 9 ~~~fssLes~I~sYsGDDPLdpWlrYIkWiEEsyPsGg~ks~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~dDP 88 (572)
+++ +.+-..+.-| .+=-..|..||+|+...| +....-+...|.-| .|--.-+|-++.+|+|+.+.
T Consensus 666 k~l-~~~~l~~s~~--~~d~~~a~~~lR~~i~~~--~~~~~~~q~~l~n~--~~s~~~~~~q~v~~~R~~~~-------- 730 (895)
T KOG2076|consen 666 KEL-QFLGLKASLY--ARDPGDAFSYLRSVITQF--QFYLDVYQLNLWNL--DFSYFSKYGQRVCYLRLIMR-------- 730 (895)
T ss_pred HHH-HHHHHHHHHh--cCCHHHHHHHHHHHHHHH--hhhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--------
Q ss_pred HHHHHHHHHCCcc-hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCC-cHHHHHHHHHHHHHHHHHHHhhh
Q 037115 89 RVMLRTMEVNHIG-TKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAE-PADELQKSYEQFLHRMERHNKKR 160 (572)
Q Consensus 89 ~dIF~fL~sngIG-tklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~Aq-PldrLk~ay~qFq~Rm~rr~~r~ 160 (572)
.|..+.-+ .-++++| +-++-..+.|+-|..+|.....-+-. |+.-|-=...-..+-|.++..++
T Consensus 731 -----~~~~~~~~~~~l~~i~---gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~R 796 (895)
T KOG2076|consen 731 -----LLVKNKDDTPPLALIY---GHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNR 796 (895)
T ss_pred -----HhccCccCCcceeeee---chhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhh
No 87
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=33.62 E-value=2.5e+02 Score=28.32 Aligned_cols=96 Identities=9% Similarity=-0.042 Sum_probs=0.0
Q ss_pred HHHHHHHhccccccccchHHHHHHHHHhcC------cCCHHHHHHHHHHCCcch---hhHHHHHHHHHHHHHccCHHHHH
Q 037115 55 LQKCAQTFESDRRYRNDMRYLRIWLHLMDF------VDDPRVMLRTMEVNHIGT---KRSLFYQANALYYEKMKKFEEAE 125 (572)
Q Consensus 55 LERCtr~FkddERYKND~RYLKIWLkYAd~------~dDP~dIF~fL~sngIGt---klALFYEaWA~~LE~~g~fkeAd 125 (572)
+++....|..-... ++.....|..++.. ..++.++|..|...+-.. ..+.+|...|..+...|++.+|.
T Consensus 123 ~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Q ss_pred HHHHHHHHCCCCcHHHHHHHHHHHHHH
Q 037115 126 KMYHLGVQNLAEPADELQKSYEQFLHR 152 (572)
Q Consensus 126 eIYqlGIqr~AqPldrLk~ay~qFq~R 152 (572)
.+|+..++.......-....-.-+..+
T Consensus 201 ~~~~~al~~~p~~~~~~~~la~~~~~~ 227 (389)
T PRK11788 201 ALLKKALAADPQCVRASILLGDLALAQ 227 (389)
T ss_pred HHHHHHHhHCcCCHHHHHHHHHHHHHC
No 88
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=32.92 E-value=36 Score=31.44 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=34.5
Q ss_pred EEeecccccCCcccccccccCC-CCCcccHHHHHHHHHhh-ccCCCccccc
Q 037115 274 VKFVDTAIVGKTEAEDACHHGL-VDPTINMKEAINAINSM-FREPLDTAKN 322 (572)
Q Consensus 274 ~~f~~~a~~~~~~~e~~~h~gl-~~~tin~kea~~~in~m-f~~p~~~~~~ 322 (572)
|||++.-+-..+.-+-.+|||. +-..+.++++|++|..- |.-|-|++-+
T Consensus 42 vR~~dirv~~~~~~~~~v~Hg~~~~~~~~~~dvL~~i~~fl~~~p~e~VIl 92 (135)
T smart00148 42 CRCVELDCWDGPDGEPVIYHGHTFTLPIKLSEVLEAIKDFAFVTSPYPVIL 92 (135)
T ss_pred CCEEEEEcccCCCCCEEEEECCcccccEEHHHHHHHHHHHHHhCCCCcEEE
Confidence 4566665555444445678888 77889999999999875 6667677643
No 89
>PF02330 MAM33: Mitochondrial glycoprotein; InterPro: IPR003428 This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q.; GO: 0005759 mitochondrial matrix; PDB: 3QV0_A 1YQF_F 3JV1_A 1P32_A 3RPX_A.
Probab=32.66 E-value=59 Score=31.67 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=26.6
Q ss_pred HHHHHHHHCCcchhhHHHHHHHHHHHHHcc
Q 037115 90 VMLRTMEVNHIGTKRSLFYQANALYYEKMK 119 (572)
Q Consensus 90 dIF~fL~sngIGtklALFYEaWA~~LE~~g 119 (572)
.++.||..+||-..+|.|=..|+...|++.
T Consensus 163 ~~~~yLeeRGId~~la~fl~~y~~~kEq~e 192 (204)
T PF02330_consen 163 AFMNYLEERGIDEELANFLHDYSTDKEQRE 192 (204)
T ss_dssp HHHHHHHHTT-SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999988753
No 90
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=32.64 E-value=67 Score=27.98 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHC
Q 037115 102 TKRSLFYQANALYYEKMKKFEEAEKMYHLGVQN 134 (572)
Q Consensus 102 tklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr 134 (572)
.+.|.=|++=|.-+|..|..++|...|+.||..
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 466778888899999999999999999999985
No 91
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=32.40 E-value=3.3e+02 Score=33.22 Aligned_cols=53 Identities=9% Similarity=0.021 Sum_probs=39.1
Q ss_pred cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCCcH
Q 037115 85 VDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPA 139 (572)
Q Consensus 85 ~dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~AqPl 139 (572)
.+++...|+-+....=. .+.-|...|.++...|++++|.+.|+..++......
T Consensus 367 ~~eA~~~~~~Al~~~P~--~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~ 419 (1157)
T PRK11447 367 LAQAERLYQQARQVDNT--DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT 419 (1157)
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 34577777777765433 334455678899999999999999999998765543
No 92
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=32.13 E-value=1.5e+02 Score=30.84 Aligned_cols=108 Identities=8% Similarity=0.090 Sum_probs=75.5
Q ss_pred HHHHHhhcCCCCC-CcHHHHHHHHHHHhhCCCCcccCchHHHHHHHHHHhccccccccchHHHHHHHHHhcCcCCHHHHH
Q 037115 14 SLIQDIKSYSGTD-PLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVDDPRVML 92 (572)
Q Consensus 14 sLes~I~sYsGDD-PLdpWlrYIkWiEEsyPsGg~ks~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~dDP~dIF 92 (572)
+|...|+.|...| +-.-..+||.-....-+.=|-... +.++-+.+.-|-+ .+|..---+=.+|..|-....-..+|.
T Consensus 49 ~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kD-L~~Y~~LLDvFPK-g~fvp~n~fQ~~F~hyp~Qq~c~i~lL 126 (228)
T PF06239_consen 49 TFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKD-LEVYKALLDVFPK-GKFVPRNFFQAEFMHYPRQQECAIDLL 126 (228)
T ss_pred HHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCccc-HHHHHHHHHhCCC-CCcccccHHHHHhccCcHHHHHHHHHH
Confidence 4566666666444 555666677666655554343444 3677777777774 677766667788999999988899999
Q ss_pred HHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHH
Q 037115 93 RTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKM 127 (572)
Q Consensus 93 ~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeI 127 (572)
..|+.+||--. +|-++.+++-.|++..+..-
T Consensus 127 ~qME~~gV~Pd----~Et~~~ll~iFG~~s~p~~K 157 (228)
T PF06239_consen 127 EQMENNGVMPD----KETEQMLLNIFGRKSHPMKK 157 (228)
T ss_pred HHHHHcCCCCc----HHHHHHHHHHhccccHHHHH
Confidence 99999998776 46667777777776655443
No 93
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=31.96 E-value=1.4e+02 Score=25.50 Aligned_cols=29 Identities=28% Similarity=0.212 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHC
Q 037115 106 LFYQANALYYEKMKKFEEAEKMYHLGVQN 134 (572)
Q Consensus 106 LFYEaWA~~LE~~g~fkeAdeIYqlGIqr 134 (572)
.-...-|.-.+..|+|.+|...|+.||+-
T Consensus 7 ~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 7 AELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34455667788889999999999988874
No 94
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=31.64 E-value=1.6e+02 Score=27.12 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=38.9
Q ss_pred HHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCCcH
Q 037115 90 VMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPA 139 (572)
Q Consensus 90 dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~AqPl 139 (572)
+++.-+..-..=-.-+..|-.+|.++...|++++|...|+.++.....|.
T Consensus 20 ~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 69 (172)
T PRK02603 20 DLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN 69 (172)
T ss_pred HHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc
Confidence 45555555555556777889999999999999999999999998755543
No 95
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=31.39 E-value=3.7e+02 Score=28.51 Aligned_cols=33 Identities=12% Similarity=0.234 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCC
Q 037115 103 KRSLFYQANALYYEKMKKFEEAEKMYHLGVQNL 135 (572)
Q Consensus 103 klALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~ 135 (572)
.-+.++..+|.++-..++|.+|.+.|+..++..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 334455555555555555555555555555554
No 96
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=31.09 E-value=86 Score=30.57 Aligned_cols=55 Identities=9% Similarity=0.030 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHC---CCCcHHHH
Q 037115 86 DDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQN---LAEPADEL 142 (572)
Q Consensus 86 dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr---~AqPldrL 142 (572)
+++..+|++|.. |-...+.||-.++..+-.+|+|.+|...|.+++.- .++|.-.+
T Consensus 52 ~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~a 109 (157)
T PRK15363 52 AGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 455666666653 55666777777777777777777777777777764 44554433
No 97
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=30.56 E-value=61 Score=38.54 Aligned_cols=60 Identities=20% Similarity=0.315 Sum_probs=41.0
Q ss_pred HHHHHHhcC---cCCHHHHHHHHH-HCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCC
Q 037115 76 RIWLHLMDF---VDDPRVMLRTME-VNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNL 135 (572)
Q Consensus 76 KIWLkYAd~---~dDP~dIF~fL~-sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~ 135 (572)
|||++|+.+ .++-.+-.++|. .-++.-.+--||.--.+++|++++.+.|.+-|..|+.-+
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c 715 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC 715 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC
Confidence 578877764 344444444442 234555666778888888888888888888888888764
No 98
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=28.59 E-value=2.7e+02 Score=28.61 Aligned_cols=104 Identities=11% Similarity=0.085 Sum_probs=61.7
Q ss_pred HHHHHHHHHH-HhhCCCCcccCchHHHHHHHHHHhccccccccchHHHHHHHHHhcC-cCCHHHHHHHHHHC-CcchhhH
Q 037115 29 LPWLQGIKKM-KDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDF-VDDPRVMLRTMEVN-HIGTKRS 105 (572)
Q Consensus 29 dpWlrYIkWi-EEsyPsGg~ks~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~-~dDP~dIF~fL~sn-gIGtklA 105 (572)
..|+.+.-++ ... +. -..-...++..+..|-+. .|.-+.+|..-.+.|..- ..++...|..+..+ --..+..
T Consensus 143 ~~~Y~~A~~l~~~~---~~-y~~Ai~af~~fl~~yP~s-~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~ 217 (263)
T PRK10803 143 NTDYNAAIALVQDK---SR-QDDAIVAFQNFVKKYPDS-TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAA 217 (263)
T ss_pred HHHHHHHHHHHHhc---CC-HHHHHHHHHHHHHHCcCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 5666665544 211 11 112245677777776554 354556654444444432 35677788877654 3333344
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHCCCC
Q 037115 106 LFYQANALYYEKMKKFEEAEKMYHLGVQNLAE 137 (572)
Q Consensus 106 LFYEaWA~~LE~~g~fkeAdeIYqlGIqr~Aq 137 (572)
..+..-+..+...|++.+|..+|+..|..-..
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 44444466777899999999999999987543
No 99
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=28.53 E-value=92 Score=23.74 Aligned_cols=48 Identities=15% Similarity=0.103 Sum_probs=33.8
Q ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCC
Q 037115 88 PRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAE 137 (572)
Q Consensus 88 P~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~Aq 137 (572)
+..+|+-+.... -..+..+..+|.+|-..|++++|..++...+.....
T Consensus 10 A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 10 AIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred HHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 344555544332 235566668999999999999999999998887654
No 100
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=28.24 E-value=78 Score=41.83 Aligned_cols=63 Identities=8% Similarity=-0.073 Sum_probs=55.3
Q ss_pred chHHHHHHHHHhcCcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHC
Q 037115 71 DMRYLRIWLHLMDFVDD---PRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQN 134 (572)
Q Consensus 71 D~RYLKIWLkYAd~~dD---P~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr 134 (572)
+.+--++|+.+|+.+.. -.-.|.++...+-+. .+..|.+.|.++-..|+-..|..+++.++..
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 67789999999998763 446788888888777 9999999999999999999999999999953
No 101
>PRK15331 chaperone protein SicA; Provisional
Probab=28.23 E-value=92 Score=30.67 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 037115 86 DDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQ 133 (572)
Q Consensus 86 dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIq 133 (572)
+++..+|+||.... .--..|+..+|..+-..+.|++|...|-.+..
T Consensus 54 ~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~ 99 (165)
T PRK15331 54 DEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT 99 (165)
T ss_pred HHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666665522 22255666666666666666666666665554
No 102
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=27.43 E-value=9.3e+02 Score=27.69 Aligned_cols=131 Identities=10% Similarity=-0.037 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHhhcCCCCCCcHHHHHHHHHHHhhCCCCcccCchHHHHHHHHHHhccccccccchHHHHHHHHHhcC---
Q 037115 8 YDTFFSSLIQDIKSYSGTDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDF--- 84 (572)
Q Consensus 8 ~~~~fssLes~I~sYsGDDPLdpWlrYIkWiEEsyPsGg~ks~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~--- 84 (572)
+++....+...+... .+....|..+-.-..+.--.......-..++++++.. +|.+..+|..|+..
T Consensus 228 ~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l---------~P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 228 YQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF---------NSDNVRIVTLYADALIR 296 (656)
T ss_pred HHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHH
Q ss_pred ---cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHH
Q 037115 85 ---VDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAEPADELQKSYEQFLH 151 (572)
Q Consensus 85 ---~dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~AqPldrLk~ay~qFq~ 151 (572)
.+.+...|+.... +.-..+..+..+|..+...|++.+|...|+..+.............-..+..
T Consensus 297 ~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~ 364 (656)
T PRK15174 297 TGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQ 364 (656)
T ss_pred CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
No 103
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=27.01 E-value=1.7e+02 Score=18.93 Aligned_cols=31 Identities=23% Similarity=0.201 Sum_probs=22.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHCCCCc
Q 037115 108 YQANALYYEKMKKFEEAEKMYHLGVQNLAEP 138 (572)
Q Consensus 108 YEaWA~~LE~~g~fkeAdeIYqlGIqr~AqP 138 (572)
|-..=..|.+.|++++|.++|+.=.+.+-.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3344455678899999999999877776665
No 104
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=26.73 E-value=3.5e+02 Score=32.99 Aligned_cols=51 Identities=12% Similarity=-0.056 Sum_probs=40.5
Q ss_pred cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCC
Q 037115 85 VDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAE 137 (572)
Q Consensus 85 ~dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~Aq 137 (572)
..++...|+..... .-..+..|...+..+...|++++|...|++.++....
T Consensus 285 ~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~ 335 (1157)
T PRK11447 285 GGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH 335 (1157)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 45677777776664 3456777888999999999999999999999986544
No 105
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=26.61 E-value=6.4e+02 Score=25.02 Aligned_cols=96 Identities=15% Similarity=0.281 Sum_probs=63.7
Q ss_pred HHHHHHHHhcc-ccccccchH--HHHHHHHHhcCc--------C-------CHHHHHHHHHHCCcchhhHHHHHHHHHHH
Q 037115 54 FLQKCAQTFES-DRRYRNDMR--YLRIWLHLMDFV--------D-------DPRVMLRTMEVNHIGTKRSLFYQANALYY 115 (572)
Q Consensus 54 LLERCtr~Fkd-dERYKND~R--YLKIWLkYAd~~--------d-------DP~dIF~fL~sngIGtklALFYEaWA~~L 115 (572)
-+.+.|..... +-|.-+|.| .+.+|+.|+.++ + .|..|++.|...|-|.-+..-|+.+..+-
T Consensus 17 tv~KmIke~lP~d~rvakeareliincCvEFI~liSsEAneic~~e~KKTIa~EHV~KALe~LgF~eYiee~~~vl~~~K 96 (156)
T KOG0871|consen 17 TVNKMIKEMLPKDVRVAKEARELIINCCVEFINLISSEANEICNKEAKKTIAPEHVIKALENLGFGEYIEEAEEVLENCK 96 (156)
T ss_pred HHHHHHHHhCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHHcchHHHHHHHHHHHHHHH
Confidence 34444444444 566777766 446677777652 2 58899999999999988888888887776
Q ss_pred HHcc-CHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHH
Q 037115 116 EKMK-KFEEAEKMYHLGVQNLAEPADELQKSYEQFLHRME 154 (572)
Q Consensus 116 E~~g-~fkeAdeIYqlGIqr~AqPldrLk~ay~qFq~Rm~ 154 (572)
+... +-.+-...=..|| |-+.|.+...++.++-.
T Consensus 97 ~~~~~~~~kssk~e~~Gi-----~eEEL~~qQqeLf~~AR 131 (156)
T KOG0871|consen 97 EEAKKRRRKSSKFEKSGI-----PEEELLRQQQELFAKAR 131 (156)
T ss_pred HHHHHhhhhhhhHHhcCC-----CHHHHHHHHHHHHHHHH
Confidence 6544 4444444444454 66777777666665544
No 106
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=25.94 E-value=8.4e+02 Score=28.46 Aligned_cols=51 Identities=12% Similarity=-0.038 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCC
Q 037115 85 VDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAE 137 (572)
Q Consensus 85 ~dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~Aq 137 (572)
.+.+..+|.-+....=+. ...+...|.++...|++.+|.++|+.++...-.
T Consensus 375 ~~eA~~~l~~al~~~P~n--~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 375 LPQAEMRARELAYNAPGN--QGLRIDYASVLQARGWPRAAENELKKAEVLEPR 425 (765)
T ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 456778888877765555 678889999999999999999999999997633
No 107
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=25.93 E-value=2.9e+02 Score=23.95 Aligned_cols=49 Identities=22% Similarity=0.260 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHCC-----CCcHHHHHHHHHHHHHH
Q 037115 104 RSLFYQANALYYEKMKKFEEAEKMYHLGVQNL-----AEPADELQKSYEQFLHR 152 (572)
Q Consensus 104 lALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~-----AqPldrLk~ay~qFq~R 152 (572)
-|.|+..=|.-....|+|++|..+|..||+-. ..=...|+.++.+|-+.
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ekn~~~k~~i~~K~~~~a~~ 58 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCINTSNETMDQALQTKLKQLARQ 58 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHH
Confidence 46777778888888999999999999999852 22234466777644433
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=24.72 E-value=6.5e+02 Score=24.39 Aligned_cols=47 Identities=11% Similarity=0.028 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCC
Q 037115 87 DPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNL 135 (572)
Q Consensus 87 DP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~ 135 (572)
++..+|.......-....+++.. |..+...|+|++|...|+.-++..
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~L--A~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLL--ASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHH--HHHHHHcCCHHHHHHHHHHHHhhC
Confidence 35555555555555544444443 333445666666666666666554
No 109
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=24.06 E-value=1e+02 Score=34.01 Aligned_cols=43 Identities=12% Similarity=0.064 Sum_probs=36.7
Q ss_pred HHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCCCC
Q 037115 95 MEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNLAE 137 (572)
Q Consensus 95 L~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~Aq 137 (572)
+-....+..+|.||.++|..+....++++|...+.++++....
T Consensus 170 ~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~ 212 (389)
T COG2956 170 LGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK 212 (389)
T ss_pred cCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc
Confidence 3345677889999999999999999999999999999987543
No 110
>PF13438 DUF4113: Domain of unknown function (DUF4113)
Probab=23.78 E-value=57 Score=25.98 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=14.4
Q ss_pred hHHHHHHHHHhcCCCcc
Q 037115 484 LKEAMEDINNMFGKPMD 500 (572)
Q Consensus 484 lKEAMddINnMFg~Pld 500 (572)
|=+|||.||.=||+..-
T Consensus 4 LM~~iD~iN~r~G~~~i 20 (52)
T PF13438_consen 4 LMQAIDAINRRFGRGTI 20 (52)
T ss_pred HHHHHHHHHHhcCCCEE
Confidence 56899999999998843
No 111
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=23.38 E-value=1.2e+02 Score=37.13 Aligned_cols=100 Identities=13% Similarity=0.103 Sum_probs=68.7
Q ss_pred CCCcHHHHHHHHHHHhhCCCCcccCchHHHHHHHHHHhccccccccchHHHHHHHHHhc---------------------
Q 037115 25 TDPLLPWLQGIKKMKDSLPSKLLKEKLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMD--------------------- 83 (572)
Q Consensus 25 DDPLdpWlrYIkWiEEsyPsGg~ks~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd--------------------- 83 (572)
.-||+.|+.. .++.|- +|....+..|||..+ .+.-.++-|+++..+|+.++=
T Consensus 38 ~a~le~wi~~---AleYy~-~gk~eefi~iLE~g~---~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~ 110 (1018)
T KOG2002|consen 38 QAPLEAWIEI---ALEYYK-QGKTEEFIKILESGL---IDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELF 110 (1018)
T ss_pred cCchhHHHHH---HHHHHh-cccHHHHHHHHHhhh---hcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 4588988764 444444 444556678898877 455567778888888887761
Q ss_pred --------------C--------------------cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHH
Q 037115 84 --------------F--------------------VDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYH 129 (572)
Q Consensus 84 --------------~--------------------~dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYq 129 (572)
+ .+++..-|.|+..+.=+--+ |...=|.++..+++|..|..+|+
T Consensus 111 ~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil--~LlGkA~i~ynkkdY~~al~yyk 188 (1018)
T KOG2002|consen 111 DKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNIL--ALLGKARIAYNKKDYRGALKYYK 188 (1018)
T ss_pred HHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchH--HHHHHHHHHhccccHHHHHHHHH
Confidence 0 12444556666655554444 44567889999999999999999
Q ss_pred HHHH
Q 037115 130 LGVQ 133 (572)
Q Consensus 130 lGIq 133 (572)
..+.
T Consensus 189 ~al~ 192 (1018)
T KOG2002|consen 189 KALR 192 (1018)
T ss_pred HHHh
Confidence 9664
No 112
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=23.20 E-value=89 Score=23.86 Aligned_cols=26 Identities=15% Similarity=0.118 Sum_probs=23.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHCC
Q 037115 110 ANALYYEKMKKFEEAEKMYHLGVQNL 135 (572)
Q Consensus 110 aWA~~LE~~g~fkeAdeIYqlGIqr~ 135 (572)
..|..+...|+|++|..+|+..+...
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~ 27 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD 27 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 46888999999999999999999988
No 113
>PRK09956 hypothetical protein; Provisional
Probab=23.02 E-value=7.2e+02 Score=26.24 Aligned_cols=67 Identities=9% Similarity=-0.021 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHhccccccccchHHHHHHHHHhcCc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCH
Q 037115 50 KLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFV---DDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKF 121 (572)
Q Consensus 50 ~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~---dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~f 121 (572)
.|..++...+..+.... .++ .++++||.|+-.. +++..+++.|....-..+ .--..+|..+++.|.-
T Consensus 187 dl~~~~~~l~~~l~~~~--~~~-~~~~~ll~Yil~~~~~~~~~~~i~~l~~~~~~~~--e~iMTiAe~l~qeG~e 256 (308)
T PRK09956 187 DLIGMVDRITTLLVRGF--TND-SQLQTLFNYLLQCGDTSRFTRFIQEIAERSPLQK--ERLMTIAERLRQEGHQ 256 (308)
T ss_pred hHHHHHHHHHHHHHhcc--CcH-HHHHHHHHHHhhccCcchHHHHHHHHHHhCcccc--hHHHHHHHHHHHHHHH
Confidence 45666666655554322 222 5589999999543 346788888877643332 2245888888887754
No 114
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=22.81 E-value=7.9e+02 Score=25.50 Aligned_cols=73 Identities=15% Similarity=0.212 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhccccccccchHHHHHHHHHhcCcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcc-----CHHHHHH
Q 037115 52 PRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFVDDPRVMLRTMEVNHIGTKRSLFYQANALYYEKMK-----KFEEAEK 126 (572)
Q Consensus 52 ~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~dDP~dIF~fL~sngIGtklALFYEaWA~~LE~~g-----~fkeAde 126 (572)
..++=.|+|+-. ++.|=..-+...+|+++|+....++==...|.|-.=+-.+-.... ..+.|.+
T Consensus 157 l~Ivv~C~RKtE-----------~~~W~~LF~~lg~P~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~ 225 (258)
T PF07064_consen 157 LEIVVNCARKTE-----------VRYWPYLFDYLGSPRDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALR 225 (258)
T ss_pred HHHHHHHHHhhH-----------HHHHHHHHHhcCCHHHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHH
Confidence 567777777643 445666666667999999998887765555555555533322233 5778888
Q ss_pred HHHHHHHCC
Q 037115 127 MYHLGVQNL 135 (572)
Q Consensus 127 IYqlGIqr~ 135 (572)
+++..++++
T Consensus 226 LL~~a~~~~ 234 (258)
T PF07064_consen 226 LLVMALESG 234 (258)
T ss_pred HHHHHHhcc
Confidence 888887764
No 115
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=22.72 E-value=1.1e+03 Score=26.80 Aligned_cols=31 Identities=19% Similarity=0.039 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHCC
Q 037115 105 SLFYQANALYYEKMKKFEEAEKMYHLGVQNL 135 (572)
Q Consensus 105 ALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~ 135 (572)
++-|...+.+++..|++++|.+-|.++++-.
T Consensus 453 ~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 453 WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4445555555555555555555555555443
No 116
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=22.30 E-value=3.5e+02 Score=30.69 Aligned_cols=43 Identities=9% Similarity=0.099 Sum_probs=20.3
Q ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 037115 89 RVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGV 132 (572)
Q Consensus 89 ~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGI 132 (572)
..++.+|...|+-.. ...|-.....|-+.|++++|.++|+.-.
T Consensus 143 ~~l~~~m~~~g~~~~-~~~~n~Li~~y~k~g~~~~A~~lf~~m~ 185 (697)
T PLN03081 143 KAVYWHVESSGFEPD-QYMMNRVLLMHVKCGMLIDARRLFDEMP 185 (697)
T ss_pred HHHHHHHHHhCCCcc-hHHHHHHHHHHhcCCCHHHHHHHHhcCC
Confidence 445555555554443 2334444444444555555555554433
No 117
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=21.63 E-value=1.1e+03 Score=25.84 Aligned_cols=47 Identities=13% Similarity=0.054 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCC
Q 037115 87 DPRVMLRTMEVNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNL 135 (572)
Q Consensus 87 DP~dIF~fL~sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~ 135 (572)
++...|..+... .......|..++..++..|++++|..+|+.++...
T Consensus 619 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 619 KAVSSFKKLLAL--QPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455566655543 23445566677777888888888888888877654
No 118
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=21.55 E-value=2.6e+02 Score=21.35 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=29.6
Q ss_pred cchhhHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHC
Q 037115 100 IGTKRSLFYQANALYYEKMK-KFEEAEKMYHLGVQN 134 (572)
Q Consensus 100 IGtklALFYEaWA~~LE~~g-~fkeAdeIYqlGIqr 134 (572)
+....+..|...|..+...| ++.+|.+.|++.|+-
T Consensus 32 ~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 32 LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34566778889999999999 799999999999864
No 119
>PF12663 DUF3788: Protein of unknown function (DUF3788); InterPro: IPR024265 This family of functionally uncharacterised proteins is found in bacteria and archaea. Proteins in this family are typically between 137 and 149 amino acids in length and may be distantly related to RelE proteins.
Probab=21.48 E-value=69 Score=29.91 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=21.9
Q ss_pred HHhhcCCCCCCcHHHHHHHHHHHhhCC
Q 037115 17 QDIKSYSGTDPLLPWLQGIKKMKDSLP 43 (572)
Q Consensus 17 s~I~sYsGDDPLdpWlrYIkWiEEsyP 43 (572)
++|..|-|. |+..|.+.+.|++++|+
T Consensus 9 ~~i~~~lg~-~~~~w~~l~~~i~~~Y~ 34 (133)
T PF12663_consen 9 EEISEYLGK-PLELWDELCSWIEETYP 34 (133)
T ss_pred HHHHHHHCc-cHHHHHHHHHHHHHHcC
Confidence 456677665 77999999999999998
No 120
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=21.35 E-value=6.4e+02 Score=25.57 Aligned_cols=59 Identities=14% Similarity=0.159 Sum_probs=44.2
Q ss_pred HCCcchhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHCC---CCcHHHHHHHHHHHHHHHHHH
Q 037115 97 VNHIGTKRSLFYQANALYYEKMKKFEEAEKMYHLGVQNL---AEPADELQKSYEQFLHRMERH 156 (572)
Q Consensus 97 sngIGtklALFYEaWA~~LE~~g~fkeAdeIYqlGIqr~---AqPldrLk~ay~qFq~Rm~rr 156 (572)
.+..|.+..+|+-....+.- .++..+++++++.-|..- ..+++.+...+++|...-..-
T Consensus 114 ~~e~~~~~~~~~L~l~il~~-~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~ 175 (278)
T PF08631_consen 114 ESEYGNKPEVFLLKLEILLK-SFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPEL 175 (278)
T ss_pred HHhCCCCcHHHHHHHHHHhc-cCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHH
Confidence 77888888888777666665 889999999999999984 366777677776666544443
No 121
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=20.73 E-value=2.4e+02 Score=18.57 Aligned_cols=32 Identities=16% Similarity=0.093 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHCCCCc
Q 037115 107 FYQANALYYEKMKKFEEAEKMYHLGVQNLAEP 138 (572)
Q Consensus 107 FYEaWA~~LE~~g~fkeAdeIYqlGIqr~AqP 138 (572)
.|......+-+.|+++.|.++|..=.+.+-+|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 46666677778889999988888766655554
No 122
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=20.69 E-value=8e+02 Score=24.77 Aligned_cols=93 Identities=13% Similarity=0.176 Sum_probs=56.3
Q ss_pred chHHHHHHHHHHhccccccccchHHHHHHHHHhcCc-CCHH---HHHHH----HHHCCcchhhHHHHHHHHHHHHHccCH
Q 037115 50 KLPRFLQKCAQTFESDRRYRNDMRYLRIWLHLMDFV-DDPR---VMLRT----MEVNHIGTKRSLFYQANALYYEKMKKF 121 (572)
Q Consensus 50 ~L~~LLERCtr~FkddERYKND~RYLKIWLkYAd~~-dDP~---dIF~f----L~sngIGtklALFYEaWA~~LE~~g~f 121 (572)
.-...+++++..|....++..=.+.+.--=...+-. .++. +.|+. ....+--...+..+...|.++-..|+|
T Consensus 92 ~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y 171 (282)
T PF14938_consen 92 EAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY 171 (282)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH
Confidence 346778888888877776665544443222222222 3433 34433 344455566788999999999999999
Q ss_pred HHHHHHHHHHHHC-CCCcHHHH
Q 037115 122 EEAEKMYHLGVQN-LAEPADEL 142 (572)
Q Consensus 122 keAdeIYqlGIqr-~AqPldrL 142 (572)
.+|.++|+.-+.. .-.|+.+.
T Consensus 172 ~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 172 EEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHhhcccccch
Confidence 9999999976664 33454433
Done!