Query 037116
Match_columns 69
No_of_seqs 100 out of 164
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 14:47:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037116.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037116hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u2z_A Histone-lysine N-methyl 97.8 4.5E-06 1.5E-10 62.4 0.4 56 2-63 123-185 (433)
2 3hxi_C Eukaryotic translation 64.5 1.7 5.8E-05 20.1 0.3 13 44-56 8-21 (21)
3 2e3n_A Lipid-transfer protein 40.7 35 0.0012 22.4 3.9 26 7-32 217-242 (255)
4 3qsz_A STAR-related lipid tran 34.7 26 0.00089 21.7 2.4 26 7-32 150-175 (189)
5 3p0l_A Steroidogenic acute reg 34.0 54 0.0018 20.9 3.9 26 7-32 185-210 (221)
6 1ln1_A PC-TP, phosphatidylchol 33.6 44 0.0015 20.9 3.4 26 7-32 180-205 (214)
7 1f9a_A Hypothetical protein MJ 33.3 34 0.0012 21.2 2.8 25 8-32 141-165 (168)
8 1em2_A MLN64 protein; beta bar 31.9 62 0.0021 20.7 3.9 26 7-32 196-221 (229)
9 1pxq_A Subtilisin A; thioether 25.8 6.2 0.00021 20.0 -1.4 11 5-15 14-24 (35)
10 1jss_A Stard4, cholesterol-reg 25.6 90 0.0031 20.0 3.9 25 7-31 194-218 (224)
11 2r55_A STAR-related lipid tran 23.1 1.1E+02 0.0037 19.5 3.9 26 7-32 199-224 (231)
12 1ej2_A Nicotinamide mononucleo 21.4 58 0.002 20.4 2.2 25 8-32 147-171 (181)
No 1
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=97.75 E-value=4.5e-06 Score=62.38 Aligned_cols=56 Identities=7% Similarity=-0.028 Sum_probs=45.9
Q ss_pred hhhhhccCCChHHHH---HHHHHHHHHHHHhHHH---HHhhcccccHHHhHHHH-ccccCcccccchhh
Q 037116 2 LASLERNLLPDAVIR---RLCRKILADRLHSVII---ELRARPYVSLAVNLNFV-DMREMPIAINTDSC 63 (69)
Q Consensus 2 i~~~E~g~lPD~~iR---~gIR~Ll~~RL~~~~~---e~~~~~~~~~~~~~~fi-~Lr~~PIAi~td~A 63 (69)
|.++|+|++||.++| .|||.++++++.+.+. +...+. .+.++ .|+..+|+...++.
T Consensus 123 ~~~~~~~~lpd~~~~~~~~~i~~~~~~~l~~~~~~~f~~~~~~------~~~~~~~Lr~~~I~~vl~a~ 185 (433)
T 1u2z_A 123 IEYSCLVFLPSPYAEQLKETILPDLNASFDNSDTKGFVNAINL------YNKMIREIPRQRIIDHLETI 185 (433)
T ss_dssp HHHHHHTTCCTTHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHH------HHHHHTTSCHHHHHHHHTTC
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHhhhhchhhHHHHHHH------HHHHHHHHhhccHHHHHHHH
Confidence 678999999999999 9999999999987665 444455 78899 99999987655543
No 2
>3hxi_C Eukaryotic translation initiation factor 4E- binding protein 1; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Homo sapiens} PDB: 3hxg_C*
Probab=64.51 E-value=1.7 Score=20.10 Aligned_cols=13 Identities=23% Similarity=0.646 Sum_probs=10.9
Q ss_pred HhHHHH-ccccCcc.....
Q 037116 44 VNLNFV-DMREMPI..... 56 (69)
Q Consensus 44 ~~~~fi-~Lr~~PI..... 56 (69)
+..+|+ ++|.+|+
T Consensus 8 YdR~fLl~~rnSP~..... 21 (21)
T 3hxi_C 8 YDRKFLMECRNSPVxxxxx 26 (26)
T ss_pred EeHHHHHHhccCCC.....
Confidence 367899 9999996
No 3
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=40.71 E-value=35 Score=22.37 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=21.4
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhHHH
Q 037116 7 RNLLPDAVIRRLCRKILADRLHSVII 32 (69)
Q Consensus 7 ~g~lPD~~iR~gIR~Ll~~RL~~~~~ 32 (69)
+|++|.++++.++....-.-++.+.+
T Consensus 217 ~G~iP~~lvn~~~~~~~~~~l~~L~k 242 (255)
T 2e3n_A 217 GGWAPASVLRAVAKREYPKFLKRFTS 242 (255)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHhccccHHHHHHHH
Confidence 58999999999998887777766654
No 4
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=34.75 E-value=26 Score=21.70 Aligned_cols=26 Identities=8% Similarity=0.045 Sum_probs=22.5
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhHHH
Q 037116 7 RNLLPDAVIRRLCRKILADRLHSVII 32 (69)
Q Consensus 7 ~g~lPD~~iR~gIR~Ll~~RL~~~~~ 32 (69)
+|.+|.++++.+.....-.-++.+.+
T Consensus 150 ~G~iP~~lvn~~~~~~~~~~l~~L~k 175 (189)
T 3qsz_A 150 GGSIPSWLANQTVVETPFGTLKALRS 175 (189)
T ss_dssp CSSSCHHHHHHTTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999988888887765
No 5
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=34.04 E-value=54 Score=20.94 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=20.9
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhHHH
Q 037116 7 RNLLPDAVIRRLCRKILADRLHSVII 32 (69)
Q Consensus 7 ~g~lPD~~iR~gIR~Ll~~RL~~~~~ 32 (69)
+|++|.+++..++....-..+..+.+
T Consensus 185 ~G~iP~~lvn~~~~~~~~~~~~~Lr~ 210 (221)
T 3p0l_A 185 KGWLPKSIINQVLSQTQVDFANHLRK 210 (221)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999997776667776654
No 6
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=33.62 E-value=44 Score=20.93 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=21.3
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhHHH
Q 037116 7 RNLLPDAVIRRLCRKILADRLHSVII 32 (69)
Q Consensus 7 ~g~lPD~~iR~gIR~Ll~~RL~~~~~ 32 (69)
+|.+|.++++.++...+-.-++.+.+
T Consensus 180 ~G~iP~~l~n~~~~~~~~~~l~~l~k 205 (214)
T 1ln1_A 180 GGQIPSWLINWAAKNGVPNFLKDMAR 205 (214)
T ss_dssp SSCCCHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHhHHHHHHHHH
Confidence 48999999999998888777776654
No 7
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3
Probab=33.28 E-value=34 Score=21.24 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=19.6
Q ss_pred cCCChHHHHHHHHHHHHHHHHhHHH
Q 037116 8 NLLPDAVIRRLCRKILADRLHSVII 32 (69)
Q Consensus 8 g~lPD~~iR~gIR~Ll~~RL~~~~~ 32 (69)
+++|+.+...-.+..+.+|++++..
T Consensus 141 ~lvP~~V~~yI~~~~l~~~~~~l~~ 165 (168)
T 1f9a_A 141 HLVPKAVVDVIKEIKGVERLRKLAQ 165 (168)
T ss_dssp GGSCHHHHHHHHHHTHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHcCChHHHHHHHh
Confidence 5789999888888888888887653
No 8
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=31.89 E-value=62 Score=20.71 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=21.4
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhHHH
Q 037116 7 RNLLPDAVIRRLCRKILADRLHSVII 32 (69)
Q Consensus 7 ~g~lPD~~iR~gIR~Ll~~RL~~~~~ 32 (69)
+|++|.+++..++...+-..++.+.+
T Consensus 196 ~G~iP~~l~n~~~~~~~~~~~~~Lr~ 221 (229)
T 1em2_A 196 KGRLPRYLIHQSLAATMFEFAFHLRQ 221 (229)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999998888777776654
No 9
>1pxq_A Subtilisin A; thioether bridge, cyclic peptide, bacteriocin, antimicrobial; HET: 2TL DPN; NMR {Bacillus subtilis} SCOP: j.5.1.2
Probab=25.84 E-value=6.2 Score=19.97 Aligned_cols=11 Identities=36% Similarity=0.449 Sum_probs=8.2
Q ss_pred hhccCCChHHH
Q 037116 5 LERNLLPDAVI 15 (69)
Q Consensus 5 ~E~g~lPD~~i 15 (69)
+-.|++||+.+
T Consensus 14 l~dgpipdfev 24 (35)
T 1pxq_A 14 LVDGPIPDFEI 24 (35)
T ss_dssp CTTTTCCCSCC
T ss_pred hccCCCCCchh
Confidence 34689999865
No 10
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=25.57 E-value=90 Score=19.98 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=19.6
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhHH
Q 037116 7 RNLLPDAVIRRLCRKILADRLHSVI 31 (69)
Q Consensus 7 ~g~lPD~~iR~gIR~Ll~~RL~~~~ 31 (69)
+|++|.+++...+-..+...+..+.
T Consensus 194 ~G~iP~~lvn~~~~~~~~~~~~~Lr 218 (224)
T 1jss_A 194 RGMIPQSAVDTAMASTLANFYSDLR 218 (224)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHhHHHHHHHHH
Confidence 5899999999998776666666554
No 11
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=23.13 E-value=1.1e+02 Score=19.47 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=20.4
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhHHH
Q 037116 7 RNLLPDAVIRRLCRKILADRLHSVII 32 (69)
Q Consensus 7 ~g~lPD~~iR~gIR~Ll~~RL~~~~~ 32 (69)
+|++|.+++..++...+-..++.+.+
T Consensus 199 ~G~iP~~lvn~~~~~~~~~~~~~Lr~ 224 (231)
T 2r55_A 199 SGYLPQNVVDSFFPRSMTRFYANLQK 224 (231)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHhHhHHHHHHHHHH
Confidence 58999999999988777776666544
No 12
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*
Probab=21.36 E-value=58 Score=20.37 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=19.9
Q ss_pred cCCChHHHHHHHHHHHHHHHHhHHH
Q 037116 8 NLLPDAVIRRLCRKILADRLHSVII 32 (69)
Q Consensus 8 g~lPD~~iR~gIR~Ll~~RL~~~~~ 32 (69)
+++|+.+...-.+..+-+|++++..
T Consensus 147 ~lvP~~V~~yI~~~~l~~~~~~l~~ 171 (181)
T 1ej2_A 147 SLLPESVVEVIDEINGVERIKHLAK 171 (181)
T ss_dssp GGSCHHHHHHHHHTTHHHHHHHHC-
T ss_pred HhCCHHHHHHHHHcCChHHHHHHHh
Confidence 5789999888877888888887765
Done!