Query 037116
Match_columns 69
No_of_seqs 100 out of 164
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 14:48:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037116.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037116hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jssa_ d.129.3.2 (A:) Cholest 44.3 14 0.001 21.5 3.9 25 7-31 171-195 (199)
2 d1ufaa1 a.8.3.3 (A:413-517) Hy 34.7 11 0.00083 21.8 2.2 23 1-23 20-42 (105)
3 d1em2a_ d.129.3.2 (A:) Lipid t 34.6 25 0.0018 20.5 3.9 26 7-32 182-207 (214)
4 d1ln1a_ d.129.3.2 (A:) Phospha 26.7 32 0.0023 19.8 3.4 26 7-32 173-198 (203)
5 d2v4ja2 d.58.36.2 (A:2-167) Di 25.6 14 0.0011 23.0 1.6 26 1-28 7-32 (166)
6 d1ej2a_ c.26.1.3 (A:) Nicotina 22.3 26 0.0019 19.4 2.2 23 8-30 144-166 (167)
7 d2e9xd1 a.278.1.4 (D:21-165) G 21.9 37 0.0027 20.2 3.0 18 15-32 65-82 (145)
8 d1riqa1 a.203.1.1 (A:237-457) 20.2 30 0.0022 21.8 2.4 19 6-24 45-68 (221)
9 d3c7ba2 d.58.36.2 (A:1-166) Di 19.5 15 0.0011 22.9 0.8 21 1-23 5-25 (166)
10 d2d4ra1 d.129.3.6 (A:2-147) Hy 17.5 73 0.0053 16.7 3.8 25 8-32 115-139 (146)
No 1
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}
Probab=44.28 E-value=14 Score=21.48 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=20.6
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhHH
Q 037116 7 RNLLPDAVIRRLCRKILADRLHSVI 31 (69)
Q Consensus 7 ~g~lPD~~iR~gIR~Ll~~RL~~~~ 31 (69)
+|.+|.+++-.++...+-+.+..+.
T Consensus 171 ~G~iP~~lvn~~~~~~~~~~~~~Lr 195 (199)
T d1jssa_ 171 RGMIPQSAVDTAMASTLANFYSDLR 195 (199)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999998888777776654
No 2
>d1ufaa1 a.8.3.3 (A:413-517) Hypothetical protein TT1467, domain 2 {Thermus thermophilus [TaxId: 274]}
Probab=34.72 E-value=11 Score=21.78 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=18.6
Q ss_pred ChhhhhccCCChHHHHHHHHHHH
Q 037116 1 MLASLERNLLPDAVIRRLCRKIL 23 (69)
Q Consensus 1 ~i~~~E~g~lPD~~iR~gIR~Ll 23 (69)
|+.++-++++++.+++.+.|-||
T Consensus 20 mv~la~~~~~~er~L~QaaRELL 42 (105)
T d1ufaa1 20 MREAARRGVLPEGVLRQAMRELL 42 (105)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHH
T ss_pred HHHHHhcCchHHHHHHHHHHHHH
Confidence 46778889999999998888743
No 3
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.61 E-value=25 Score=20.49 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=20.9
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhHHH
Q 037116 7 RNLLPDAVIRRLCRKILADRLHSVII 32 (69)
Q Consensus 7 ~g~lPD~~iR~gIR~Ll~~RL~~~~~ 32 (69)
+|.+|.+++...+-...-+.++.+.+
T Consensus 182 ~G~iP~~lvn~~~~~~~~~~~~~Lrk 207 (214)
T d1em2a_ 182 KGRLPRYLIHQSLAATMFEFAFHLRQ 207 (214)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 68999999999998877777766544
No 4
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.65 E-value=32 Score=19.81 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=20.5
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhHHH
Q 037116 7 RNLLPDAVIRRLCRKILADRLHSVII 32 (69)
Q Consensus 7 ~g~lPD~~iR~gIR~Ll~~RL~~~~~ 32 (69)
+|.+|.+++......+..+-+..+.+
T Consensus 173 ~G~iP~~lvn~~~~~~~~~~~~~l~k 198 (203)
T d1ln1a_ 173 GGQIPSWLINWAAKNGVPNFLKDMAR 198 (203)
T ss_dssp SSCCCHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999888887777766543
No 5
>d2v4ja2 d.58.36.2 (A:2-167) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}
Probab=25.56 E-value=14 Score=23.04 Aligned_cols=26 Identities=27% Similarity=0.158 Sum_probs=19.4
Q ss_pred ChhhhhccCCChHHHHHHHHHHHHHHHH
Q 037116 1 MLASLERNLLPDAVIRRLCRKILADRLH 28 (69)
Q Consensus 1 ~i~~~E~g~lPD~~iR~gIR~Ll~~RL~ 28 (69)
|+.-+|+|++|-+|. +|++....|.+
T Consensus 7 ~LdeLE~GPWPSfVt--~lK~~a~~~~~ 32 (166)
T d2v4ja2 7 KLDQLESGPWPSFVS--DIKQEAAYRAA 32 (166)
T ss_dssp TGGGGGSSSSCCHHH--HHHHHHHHHHH
T ss_pred cHHHHhcCCCchHHH--HHHHHhhhhhc
Confidence 567799999999984 67666555543
No 6
>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.26 E-value=26 Score=19.39 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=14.7
Q ss_pred cCCChHHHHHHHHHHHHHHHHhH
Q 037116 8 NLLPDAVIRRLCRKILADRLHSV 30 (69)
Q Consensus 8 g~lPD~~iR~gIR~Ll~~RL~~~ 30 (69)
.++|+.+...-.+.-.-.|+|++
T Consensus 144 ~lvP~~V~~~i~~~~g~~r~~~~ 166 (167)
T d1ej2a_ 144 SLLPESVVEVIDEINGVERIKHL 166 (167)
T ss_dssp GGSCHHHHHHHHHTTHHHHHHHH
T ss_pred HhCCHHHHHHHHHCCcHHHHHhc
Confidence 46888887765554455666654
No 7
>d2e9xd1 a.278.1.4 (D:21-165) GINS complex subunit 4, SLD5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.89 E-value=37 Score=20.18 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhHHH
Q 037116 15 IRRLCRKILADRLHSVII 32 (69)
Q Consensus 15 iR~gIR~Ll~~RL~~~~~ 32 (69)
||..||..++.||..+.+
T Consensus 65 ikfllrsYLR~RL~KIek 82 (145)
T d2e9xd1 65 IRYVLSSYLRCRLMKIEK 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 688999999999998776
No 8
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=20.22 E-value=30 Score=21.76 Aligned_cols=19 Identities=32% Similarity=0.662 Sum_probs=13.1
Q ss_pred hccCCCh-----HHHHHHHHHHHH
Q 037116 6 ERNLLPD-----AVIRRLCRKILA 24 (69)
Q Consensus 6 E~g~lPD-----~~iR~gIR~Ll~ 24 (69)
--|.+|. .++|+.|||-++
T Consensus 45 ~DGv~PsN~grGYvlRriiRRa~r 68 (221)
T d1riqa1 45 SDGVIPSNEGRGYVIRRILRRAMR 68 (221)
T ss_dssp HTTCCCCSSHHHHHHHHHHHHHHH
T ss_pred hcCCCCCcCCCchHHHHHHHHHHH
Confidence 3478886 467777777654
No 9
>d3c7ba2 d.58.36.2 (A:1-166) Dissimilatory sulfite reductase subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=19.54 E-value=15 Score=22.92 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=15.7
Q ss_pred ChhhhhccCCChHHHHHHHHHHH
Q 037116 1 MLASLERNLLPDAVIRRLCRKIL 23 (69)
Q Consensus 1 ~i~~~E~g~lPD~~iR~gIR~Ll 23 (69)
|+.-+|+|++|-+|. +|+++-
T Consensus 5 ~LdeLE~GPWPSfV~--~~K~~a 25 (166)
T d3c7ba2 5 LLDELEKGPWPSFVK--EIKKTA 25 (166)
T ss_dssp HHHGGGSSSSCCHHH--HHHHHH
T ss_pred chHHHhcCCCchHHH--HHHHHH
Confidence 356789999999984 565553
No 10
>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}
Probab=17.53 E-value=73 Score=16.72 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=19.3
Q ss_pred cCCChHHHHHHHHHHHHHHHHhHHH
Q 037116 8 NLLPDAVIRRLCRKILADRLHSVII 32 (69)
Q Consensus 8 g~lPD~~iR~gIR~Ll~~RL~~~~~ 32 (69)
+.+++.+++..++..+++.|+.+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~l~~l~~ 139 (146)
T d2d4ra1 115 GGLLRKLVQKLMQENVESLLKGLEE 139 (146)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888888888888888877655
Done!