Query 037117
Match_columns 529
No_of_seqs 143 out of 250
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 08:50:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05292 MCD: Malonyl-CoA deca 100.0 2E-142 3E-147 1089.0 20.4 352 94-488 1-354 (354)
2 KOG3018 Malonyl-CoA decarboxyl 100.0 6E-114 1E-118 850.7 18.4 355 139-514 4-361 (362)
3 COG4103 Uncharacterized protei 63.4 48 0.001 31.9 8.6 97 50-158 4-109 (148)
4 cd08818 CARD_MDA5_1 Caspase ac 48.8 3 6.4E-05 36.8 -1.8 74 328-437 13-88 (88)
5 PF07176 DUF1400: Alpha/beta h 39.5 78 0.0017 29.2 5.9 41 66-111 28-69 (127)
6 PF15612 WHIM1: WSTF, HB1, Itc 34.6 38 0.00081 25.8 2.5 35 79-114 13-47 (50)
7 COG1802 GntR Transcriptional r 31.9 2.8E+02 0.0061 27.0 8.7 112 92-206 42-155 (230)
8 PF02263 GBP: Guanylate-bindin 31.9 34 0.00074 34.6 2.4 44 215-258 174-222 (260)
9 PF08885 GSCFA: GSCFA family; 29.9 36 0.00078 34.9 2.3 28 316-343 154-181 (251)
10 KOG0775 Transcription factor S 28.5 41 0.00089 35.5 2.4 63 402-470 116-178 (304)
11 smart00351 PAX Paired Box doma 27.7 2.8E+02 0.0061 25.1 7.4 26 93-118 37-62 (125)
12 PF09012 FeoC: FeoC like trans 27.2 76 0.0017 25.7 3.3 25 92-116 17-41 (69)
13 cd07313 terB_like_2 tellurium 26.4 4E+02 0.0087 22.6 8.3 43 75-117 8-50 (104)
14 smart00102 ADF Actin depolymer 25.4 73 0.0016 28.5 3.1 37 230-266 37-78 (127)
15 PF13718 GNAT_acetyltr_2: GNAT 24.4 2.2E+02 0.0048 28.4 6.6 106 230-336 10-132 (196)
16 PF09150 Carot_N: Orange carot 24.3 1.7E+02 0.0037 28.6 5.5 34 70-103 126-159 (159)
17 PF12244 DUF3606: Protein of u 24.0 91 0.002 25.1 3.1 22 92-113 23-44 (57)
18 PF04844 Ovate: Transcriptiona 23.5 2E+02 0.0042 23.8 4.9 46 50-96 5-50 (59)
19 PF09150 Carot_N: Orange carot 23.2 1.8E+02 0.004 28.4 5.5 26 74-99 86-111 (159)
20 COG2945 Predicted hydrolase of 22.7 51 0.0011 33.3 1.8 33 305-341 106-138 (210)
21 cd00013 ADF Actin depolymerisa 22.2 90 0.002 27.7 3.1 35 233-267 46-85 (132)
22 TIGR01568 A_thal_3678 uncharac 21.1 2.1E+02 0.0045 24.2 4.8 45 50-94 11-55 (66)
23 COG1583 CRISPR system related 20.9 37 0.00081 34.9 0.4 9 332-340 123-131 (240)
24 PF13518 HTH_28: Helix-turn-he 20.9 1.3E+02 0.0028 22.1 3.3 25 92-116 15-39 (52)
25 PF11015 DUF2853: Protein of u 20.7 97 0.0021 28.2 2.9 59 43-101 39-99 (102)
26 PF10410 DnaB_bind: DnaB-helic 20.4 2.8E+02 0.006 21.2 5.1 34 72-105 24-58 (59)
No 1
>PF05292 MCD: Malonyl-CoA decarboxylase (MCD); InterPro: IPR007956 This family consists of several eukaryotic malonyl-CoA decarboxylase (MLYCD) proteins. Malonyl-CoA, in addition to being an intermediate in the de novo synthesis of fatty acids, is an inhibitor of carnitine palmitoyltransferase I, the enzyme that regulates the transfer of long-chain fatty acyl-CoA into mitochondria, where they are oxidised. After exercise, malonyl-CoA decarboxylase participates with acetyl-CoA carboxylase in regulating the concentration of malonyl-CoA in liver and adipose tissue, as well as in muscle. Malonyl-CoA decarboxylase is regulated by AMP-activated protein kinase (AMPK) [].; GO: 0050080 malonyl-CoA decarboxylase activity, 0006633 fatty acid biosynthetic process; PDB: 2YGW_B.
Probab=100.00 E-value=1.5e-142 Score=1089.00 Aligned_cols=352 Identities=52% Similarity=0.855 Sum_probs=239.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhhcccccccCCCCcccccchhHHHHHHHHHhccccHHHHHHHHhcCCChHHHHHHHHHH
Q 037117 94 VLAKEYDLNRTQVCELIKQYLGVLGEEAQSAGHEEDGVLGSFYRIERNLRHALKPMYEGLFERLNMHPGGLKVLTSLRAD 173 (529)
Q Consensus 94 ~La~~f~~d~~~v~~a~~~y~~~~~~e~~~~~~~~~~~~~a~~~ae~~Lr~aleP~r~~Lfrrln~~pgG~kfLV~mRaD 173 (529)
+|+++||||+++|.+|+++|.... +++.+|+.+++|+|++||++||++||||+|||+||+|
T Consensus 1 ml~~~f~~d~~~~~~a~~~y~~~~-------------------~~~~~l~~a~~p~r~~l~~~ln~~pgG~~~Lv~mR~d 61 (354)
T PF05292_consen 1 MLAEKFGPDQEALDKAIEAYDKND-------------------QAERRLRQALEPPRQELFRRLNRLPGGTKFLVDMRAD 61 (354)
T ss_dssp -----------------------------------------------HHHHHTS-TTHHHHHHHHTSTTHHHHHHHHHHH
T ss_pred CCcccccccccccccccccchhhh-------------------hHHHHHHHHhcchHHHHHHHHhcCCCchHHHHHHHHH
Confidence 589999999999999999993221 2348999999999999999999999999999999999
Q ss_pred HHHHHHhccchhHHHHhHHHHHHHHhccCcccceeeecCCCCcHHHHHHHHhhccccCCCCchhHhhhhCCC-ceEEEee
Q 037117 174 ILSILAEENIASLRALDSYLKEKLGTWLSPAALELHQITWDDPASLLEKIVAYEAVHPISNLLDLKRRLGVG-RRCFGYL 252 (529)
Q Consensus 174 LL~~l~~~~~p~L~aLD~dL~~LlssWF~~GfL~L~rItW~SPA~iLEKIi~YEAVH~I~~W~DLkrRL~~d-RRCFaFF 252 (529)
||+...+ .|+|++||.||+|||++|||+|||+|+||||+|||+||||||+|||||||+||+||||||+|+ ||||+||
T Consensus 62 ll~~~~~--~~~L~~ld~~l~~Ll~~WF~~G~L~l~rItw~spa~iLekii~yEAVH~i~~w~DLkrRL~~~dRRcfaff 139 (354)
T PF05292_consen 62 LLSSAKS--SPELRALDSDLRHLLSSWFNVGFLELRRITWSSPASILEKIIRYEAVHPIRSWDDLKRRLGPDDRRCFAFF 139 (354)
T ss_dssp HHHTSS---SHHHHHHHHHHHHHHHHHTSGGGEEEEEE-TTS-HHHHHHHHHT--SS---SHHHHHHHCSTT-EEEEEEE
T ss_pred HHhcccc--CccHHHHHHHHHHHHHHhcCccceEEEeecCCChHHHHHHHHHHhhcccccCHHHHHHHhchhhhhhheee
Confidence 9997666 599999999999999999999999999999999999999999999999999999999999995 9999999
Q ss_pred cCCCCCCCeEEEeeecccchhhhHHhhhcCC-CCCCCCCCceEEEEeecccccCcccccchhhHHHHHHHHHHhhCCCCC
Q 037117 253 HAAIPGEPLIFIEVALLKNVAQTIQEVLWDD-PPIPECEATCALFYSISSTQRGLAGINLGKFLIKRVITLVKRDMPHIS 331 (529)
Q Consensus 253 HPamP~EPLIFVeVALt~~ia~sIq~iL~~~-~~~~~~~a~tAiFYSISntQ~GL~GIsfGNfLIKrVV~~L~~e~P~lk 331 (529)
||+||+|||||||||||++||+|||+||++. ++++++++||||||||||||+||+|||||||||||||++|++|||+||
T Consensus 140 Hp~mP~ePLIfveVALt~~ia~sIq~il~~~~~~~~~~~~~tAiFYSISn~q~GL~Gi~lGn~LIK~Vv~~L~~e~p~l~ 219 (354)
T PF05292_consen 140 HPAMPDEPLIFVEVALTDGIASSIQPILDEDRPPIDEEEADTAIFYSISNTQKGLRGISLGNFLIKRVVEELQREFPNLK 219 (354)
T ss_dssp ETTCTT--SEEEEEEEESS----SHHHHS------------EEEEEEEEES-GGGTTS-HHHHHHHHHHHHHHHH-TT--
T ss_pred cCCCCCCCeeeeHHHhccchhhhhHHHhcCCCcccccCCCCEEEEEecccchhhhccCchHHHHHHHHHHHHHHhCcccc
Confidence 9999999999999999999999999999875 667888999999999999999999999999999999999999999999
Q ss_pred cccccCCccchHHHHHhhhhhhhhhhhhcccccccccccccchhcccCChHHHHHHhhhhHHhhhccchHHHHHHHhhcc
Q 037117 332 TFATISPIPGFIQWLLSKLASQSKLAEVNDISQSSADRSGSAFRENILEPEEEKALMDLSEEFVAGKNGMERMLNLLTSK 411 (529)
Q Consensus 332 tF~TLSPIPGF~~WL~~~l~~~~~~~~~~~~~~~~~~~~~~~f~e~~l~~~e~~~~~~~~~e~~~~~~~~~~l~~~L~~~ 411 (529)
||+||||||||++||.++++.+.... ...+|..+....+ .......+......|.. |.+
T Consensus 220 ~F~TLSPiPgF~~Wl~~~l~~~~~~~--------------~~~~~~~l~~~~~-----~~~~~~~~~~~~~~L~~-l~~- 278 (354)
T PF05292_consen 220 TFSTLSPIPGFRRWLLKKLASDSDLP--------------SLTEEKALAALSD-----ISSSESNGLEALEALLA-LDD- 278 (354)
T ss_dssp EEEE-B----HHHHHHHH--------------------------------------------------THHHHH--HTT-
T ss_pred ccccCCCCccHHHHHHHHhhcchhhc--------------cchhHHHHHHhhh-----hhhccCccchhHhhhhh-ccC-
Confidence 99999999999999999876533211 0111111110000 00000011112223332 344
Q ss_pred CCcccCCchhhhhhhhHHHHHHHHHHhhhhcCCCCCCccccccccCcchhhhcccCcCCChhhhhcccceeeecccc
Q 037117 412 NHEWSNFAPLLSILKTPLLRLCARYLLQEKKRGKALDSVANFHLQNGAMIERINWMADRSENGLHQSAGIMVNYVYR 488 (529)
Q Consensus 412 ~~~w~~d~~l~~~lk~~L~rLaA~YL~~eK~~g~~lDPVA~FHLgNGA~leRlNw~aD~S~kGl~qS~GiMVNYlY~ 488 (529)
++|+.|+++.++++++|++||||||++||++|+|+||||||||||||+||||||+||+|+||++|||||||||+||
T Consensus 279 -~~W~~d~~~~~~l~~~l~~l~a~Yl~~ek~~g~~~dpVa~FHL~NGA~~~rlnw~ad~S~~Gl~~S~G~MVNY~Y~ 354 (354)
T PF05292_consen 279 -PDWAEDPELSEALKPPLLRLAAHYLLNEKRRGRALDPVARFHLGNGARLERLNWLADTSPKGLRQSFGLMVNYLYD 354 (354)
T ss_dssp -TGGGG-HHHHHHTHHHHHHHHHHHHHT-EETTEESSHHHHHHHHTT-EEEEEETTS--SHHHHHHHTT-EEEEEE-
T ss_pred -ccccCCHHHHHHHHHHHHHHHHHHHHhhhcCCCcCCchhhhccCCCcEeeeeeeCCcCChhHHHhccceeEeeecC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>KOG3018 consensus Malonyl-CoA decarboxylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.3e-114 Score=850.68 Aligned_cols=355 Identities=51% Similarity=0.813 Sum_probs=326.5
Q ss_pred HHHHHHhccccHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhc--cchhHHHHhHHHHHHHHhccCcccceeeecCCCCc
Q 037117 139 ERNLRHALKPMYEGLFERLNMHPGGLKVLTSLRADILSILAEE--NIASLRALDSYLKEKLGTWLSPAALELHQITWDDP 216 (529)
Q Consensus 139 e~~Lr~aleP~r~~Lfrrln~~pgG~kfLV~mRaDLL~~l~~~--~~p~L~aLD~dL~~LlssWF~~GfL~L~rItW~SP 216 (529)
|..+|.+..|+|..||+.+.++|||+.++|.||+|+|...+-. ..+.|+.+..-++..+++||+.|||.|+|.||.||
T Consensus 4 e~~~r~~~~~ryr~li~si~~l~ggv~~ivq~rad~l~~~~~~~v~~~tlr~m~~a~~~~lt~wfs~g~l~ler~twssp 83 (362)
T KOG3018|consen 4 EKFTRFDEKERYRKLIQSIPQLNGGVDHIVQNRADFLTTGRVYDVVRETLRHMHSAISASLTGWFSIGLLDLERGTWSSP 83 (362)
T ss_pred cccchhhhhHHHHHHHhcccCCCchHHHHHHhHHHHHhhhceeecccccHHHHHHHHHHHHHhhhhccccchheeeecCc
Confidence 4678999999999999999999999999999999999998753 24789999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCCchhHhhhhCCCceEEEeecCCCCCCCeEEEeeecccchhhhHHhhhcCCCC-CCCCCCceEE
Q 037117 217 ASLLEKIVAYEAVHPISNLLDLKRRLGVGRRCFGYLHAAIPGEPLIFIEVALLKNVAQTIQEVLWDDPP-IPECEATCAL 295 (529)
Q Consensus 217 A~iLEKIi~YEAVH~I~~W~DLkrRL~~dRRCFaFFHPamP~EPLIFVeVALt~~ia~sIq~iL~~~~~-~~~~~a~tAi 295 (529)
+.+|+||..||||||..+|.|+|+|+||.||||+|-||+.|+|||||||||||.+|++|||+|..+.+| ..+++-||||
T Consensus 84 ~e~lqK~~e~eAvhpv~n~~d~r~rvgpyrrc~~fsh~a~p~ePLv~ihVAL~~~ia~svq~itk~~~pt~kee~qttai 163 (362)
T KOG3018|consen 84 LEDLQKLLEVEAVHPVVNREDVRERVGPYRRCLGFSHPASPREPLVFIHVALMETIAQSVQEITKRGAPTGKEEDQTTAI 163 (362)
T ss_pred HHHHHHHHHHhhhccccCHHHHHHHhhhhhhhhccccCCCCCCceEEEehHhHHHHHHHHHHHHhcCCCCCcccccceeE
Confidence 999999999999999999999999999999999999999999999999999999999999999987644 4667779999
Q ss_pred EEeecccccCcccccchhhHHHHHHHHHHhhCCCCCcccccCCccchHHHHHhhhhhhhhhhhhcccccccccccccchh
Q 037117 296 FYSISSTQRGLAGINLGKFLIKRVITLVKRDMPHISTFATISPIPGFIQWLLSKLASQSKLAEVNDISQSSADRSGSAFR 375 (529)
Q Consensus 296 FYSISntQ~GL~GIsfGNfLIKrVV~~L~~e~P~lktF~TLSPIPGF~~WL~~~l~~~~~~~~~~~~~~~~~~~~~~~f~ 375 (529)
|||||+||+||+||++|||||||||.+||+|+|++.||+||||||||++||.+++.++... .+.|.
T Consensus 164 yysit~tQpGL~Gi~LG~fLIKrV~t~lqkd~Phv~tfstLSPIPGF~~WLl~~L~sqs~~--------------~~~~n 229 (362)
T KOG3018|consen 164 YYSITSTQPGLAGINLGKFLIKRVITLLQKDMPHVSTFSTLSPIPGFMQWLLSKLSSQSRF--------------AEDFN 229 (362)
T ss_pred EEeecccCCcccccchHHHHHHHHHHHHHhcCCccccccccCCCccHHHHHHHhccccccc--------------chhhh
Confidence 9999999999999999999999999999999999999999999999999999999776542 34566
Q ss_pred cccCChHHHHHHhhhhHHhhhccchHHHHHHHhhccCCcccCCchhhhhhhhHHHHHHHHHHhhhhcCCCCCCccccccc
Q 037117 376 ENILEPEEEKALMDLSEEFVAGKNGMERMLNLLTSKNHEWSNFAPLLSILKTPLLRLCARYLLQEKKRGKALDSVANFHL 455 (529)
Q Consensus 376 e~~l~~~e~~~~~~~~~e~~~~~~~~~~l~~~L~~~~~~w~~d~~l~~~lk~~L~rLaA~YL~~eK~~g~~lDPVA~FHL 455 (529)
|..+.+. -..+ ...+.++++..+.+|.-...+|..++.+..+++++||+||||||++||++|+++||||||||
T Consensus 230 Ekv~~~~-~sdi------Se~~~n~~e~tl~LL~v~s~ew~~se~L~~alq~iLMrlCA~YL~~eK~rG~ALnsVANFHl 302 (362)
T KOG3018|consen 230 EKVLLPT-LSDI------SESGSNGMEVTLNLLSVKSCEWATSERLLPALQPILMRLCARYLLQEKKRGKALNSVANFHL 302 (362)
T ss_pred hhhhchh-hhhh------hhccCccHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHhhhhcCccccchhhhhc
Confidence 7665542 1111 12455688888888866668999999999999999999999999999999999999999999
Q ss_pred cCcchhhhcccCcCCChhhhhcccceeeecccccccHHHHHHHHHhcCceeecHHHHHh
Q 037117 456 QNGAMIERINWMADRSENGLHQSAGIMVNYVYRLENIEEYAQSYFSTGQIHASDDVCRY 514 (529)
Q Consensus 456 gNGA~leRlNw~aD~S~kGl~qS~GiMVNYlY~L~~ie~nhe~Y~~~g~I~aS~~V~~l 514 (529)
+|||++||||||||+|.||++|||||||||+|+|+++.+|+.+|.+++.++++.+|.++
T Consensus 303 qNGA~l~RiNWmaD~S~rGI~~S~GiMvNYrY~lekv~~nsaay~~~k~m~~nqkvldi 361 (362)
T KOG3018|consen 303 QNGAMLERINWMADRSERGIRQSGGIMVNYRYRLEKVHENSAAYTEHKKMAINQKVLDI 361 (362)
T ss_pred cCcceEEEeeccccchhhcccccCceEEEEEEehhhhCCCchhhhhhhhHHhhhhHhhc
Confidence 99999999999999999999999999999999999999999999999999999999765
No 3
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.37 E-value=48 Score=31.90 Aligned_cols=97 Identities=12% Similarity=0.115 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhccCccchH---HHHHH-----HHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhccccc
Q 037117 50 FEHVRDSMHSAISMNKTEVI---DTVLN-----DFSEGYFSLCYENRRRLLLVLAKEYDLNRTQVCELIKQYLGVLGEEA 121 (529)
Q Consensus 50 ~~~~~~~~~~~~~~~~~ev~---~~~a~-----~i~~~Y~~l~~~~r~~fl~~La~~f~~d~~~v~~a~~~y~~~~~~e~ 121 (529)
++++...++.+.....++.+ .++|. ++.+.=-.-++.++.+|...|.+.||++.+++.+.+++-.+...
T Consensus 4 f~~~~sfl~~l~~~~~~~~~adDP~lAa~~Llf~Vm~ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~--- 80 (148)
T COG4103 4 FERLLSFLKQLPGGLDGDNSADDPRLAAAALLFHVMEADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGY--- 80 (148)
T ss_pred HHHHHHHHHhccCccccCcCCCCHHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhH---
Confidence 45556666666554333322 22332 34444456678899999999999999999999999887655433
Q ss_pred ccCCCCcccccchhHHHHHHHHHhc-cccHHHHHHHHh
Q 037117 122 QSAGHEEDGVLGSFYRIERNLRHAL-KPMYEGLFERLN 158 (529)
Q Consensus 122 ~~~~~~~~~~~~a~~~ae~~Lr~al-eP~r~~Lfrrln 158 (529)
+ .. .+|+--..|++-+ +-.|.+|+.-|-
T Consensus 81 ------E-a~--d~y~fts~l~r~Ld~e~R~eli~~mw 109 (148)
T COG4103 81 ------E-AI--DLYSFTSVLKRHLDEEQRLELIGLMW 109 (148)
T ss_pred ------H-HH--HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1 11 1355556676544 445666666553
No 4
>cd08818 CARD_MDA5_1 Caspase activation and recruitment domain found in MDA5, first repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), first repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-
Probab=48.80 E-value=3 Score=36.77 Aligned_cols=74 Identities=16% Similarity=0.374 Sum_probs=45.2
Q ss_pred CCCCcccccCCccchHHHHHhhhhhhhhhhhhcccccccccccccchhcccCChHHHHHHhhhhHHhhhccchHHHHHHH
Q 037117 328 PHISTFATISPIPGFIQWLLSKLASQSKLAEVNDISQSSADRSGSAFRENILEPEEEKALMDLSEEFVAGKNGMERMLNL 407 (529)
Q Consensus 328 P~lktF~TLSPIPGF~~WL~~~l~~~~~~~~~~~~~~~~~~~~~~~f~e~~l~~~e~~~~~~~~~e~~~~~~~~~~l~~~ 407 (529)
|.||+..--+||=+|+.||..+....+.. ..+..+...+++.|++.
T Consensus 13 ~rlk~~i~v~~VL~~l~~L~~e~ke~I~a----------------------------------~~~~~Gn~~AA~~LL~~ 58 (88)
T cd08818 13 PRLKRYIRVEPVLDYLTFLEAEVKERIRA----------------------------------AAATRGNIAAAELLLST 58 (88)
T ss_pred HHHHHhccHHHHhhhcccCCHHHHHHHHH----------------------------------HHHccCcHHHHHHHHHH
Confidence 55666667788888888887664332210 00111222344455555
Q ss_pred hhc--cCCcccCCchhhhhhhhHHHHHHHHHH
Q 037117 408 LTS--KNHEWSNFAPLLSILKTPLLRLCARYL 437 (529)
Q Consensus 408 L~~--~~~~w~~d~~l~~~lk~~L~rLaA~YL 437 (529)
|.. -.++|.. ++..+|+..=..|||+|+
T Consensus 59 l~~~~~~~GWf~--~FldAL~~~G~~laa~y~ 88 (88)
T cd08818 59 LEKGTWDPGWFR--EFVTALEQGGCTLAARYV 88 (88)
T ss_pred HHHhccCCchHH--HHHHHHHhcCChHHHhcC
Confidence 543 2367876 778888877788999995
No 5
>PF07176 DUF1400: Alpha/beta hydrolase of unknown function (DUF1400); InterPro: IPR010802 This domain is specific to cyanobacterial proteins, its function and the function of the proteins it is associated with, are uncharacterised.
Probab=39.51 E-value=78 Score=29.15 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=33.5
Q ss_pred cchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 037117 66 TEVIDTVLNDFSEGYFSL-CYENRRRLLLVLAKEYDLNRTQVCELIK 111 (529)
Q Consensus 66 ~ev~~~~a~~i~~~Y~~l-~~~~r~~fl~~La~~f~~d~~~v~~a~~ 111 (529)
|+++.. +..|..+ +++++..|-..|...+.+|+..+...+.
T Consensus 28 G~~~~~-----L~~~~~ll~~~~~~~lr~~L~~~~~~~~~~~~~lL~ 69 (127)
T PF07176_consen 28 GEISPE-----LAFYLNLLSPQQRQQLRELLNTPIPIDPVFLSQLLN 69 (127)
T ss_pred CCCCHH-----HHHHHHhcCHhhHHHHHHHHcCCCCCCHHHHHHHhC
Confidence 555544 4567777 9999999999999999999999888773
No 6
>PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B.
Probab=34.58 E-value=38 Score=25.79 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=27.8
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 037117 79 GYFSLCYENRRRLLLVLAKEYDLNRTQVCELIKQYL 114 (529)
Q Consensus 79 ~Y~~l~~~~r~~fl~~La~~f~~d~~~v~~a~~~y~ 114 (529)
.|..|+.++|...|+.|+... .+-..|+.-++...
T Consensus 13 ~y~~L~~~~kl~iL~~L~~~~-l~s~~vr~~i~~~~ 47 (50)
T PF15612_consen 13 EYYELSPEEKLEILRALCDQL-LSSSSVRNEIEERE 47 (50)
T ss_dssp TCCCS-HHHHHHHHHHHHHHH-CC-CCHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHH-cCcHHHHHHHHHhh
Confidence 478999999999999999887 88877887776654
No 7
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=31.93 E-value=2.8e+02 Score=27.01 Aligned_cols=112 Identities=17% Similarity=0.078 Sum_probs=69.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc--cccccCCCCcccccchhHHHHHHHHHhccccHHHHHHHHhcCCChHHHHHH
Q 037117 92 LLVLAKEYDLNRTQVCELIKQYLGVLG--EEAQSAGHEEDGVLGSFYRIERNLRHALKPMYEGLFERLNMHPGGLKVLTS 169 (529)
Q Consensus 92 l~~La~~f~~d~~~v~~a~~~y~~~~~--~e~~~~~~~~~~~~~a~~~ae~~Lr~aleP~r~~Lfrrln~~pgG~kfLV~ 169 (529)
-..||+.||+++.-|++|+....+..- -.|+.+-....-+. ...+--..+|..+|+.--+++-.- .-+.....|-.
T Consensus 42 e~~La~~~gvSrtPVReAL~rL~~eGlv~~~p~rG~~V~~~~~-~~~~ei~~~R~~lE~~a~~~a~~~-~~~~~~~~l~~ 119 (230)
T COG1802 42 EEELAEELGVSRTPVREALRRLEAEGLVEIEPNRGAFVAPLSL-AEAREIFEVRELLEGAAARLAAAR-ATEEDLAELEA 119 (230)
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHCCCeEecCCCCCeeCCCCH-HHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 457899999999999999999865421 12222111111110 112222567778887766655543 34556666666
Q ss_pred HHHHHHHHHHhccchhHHHHhHHHHHHHHhccCcccc
Q 037117 170 LRADILSILAEENIASLRALDSYLKEKLGTWLSPAAL 206 (529)
Q Consensus 170 mRaDLL~~l~~~~~p~L~aLD~dL~~LlssWF~~GfL 206 (529)
+-.++-......+ +.+..+|.+|-..|...-...+|
T Consensus 120 ~~~~~~~~~~~~~-~~~~~~~~~FH~~l~~~a~n~~l 155 (230)
T COG1802 120 ILEELRKAIAAGD-DAFLELNRAFHLALAEAAGNPYL 155 (230)
T ss_pred HHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHcCCHHH
Confidence 6666655555554 78889999998888877665443
No 8
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=31.88 E-value=34 Score=34.61 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=33.7
Q ss_pred CcHHHHHHHHhhccc--cCCCCchhHhhhhC---CCceEEEeecCCCCC
Q 037117 215 DPASLLEKIVAYEAV--HPISNLLDLKRRLG---VGRRCFGYLHAAIPG 258 (529)
Q Consensus 215 SPA~iLEKIi~YEAV--H~I~~W~DLkrRL~---~dRRCFaFFHPamP~ 258 (529)
+|...||+.++.+.- ..+..-+.+|+.|. ++|.||.+.||.-..
T Consensus 174 t~~eyLe~~L~~~~~~~~~~~~~N~iR~~I~~~F~~~~cf~Lp~P~~~~ 222 (260)
T PF02263_consen 174 TPQEYLEQALKPESGQDEEIQERNKIRECIRSCFPSRDCFTLPHPGSDV 222 (260)
T ss_dssp HHHHHHHHHCCSSTSSSCCCCCHHHHHHHHHHHECCEEEEEEE-SSCCC
T ss_pred CHHHHHHHHHhcccchhHHHHHhhHHHHHHHHHCCCCeEEEecCCCchh
Confidence 588899999886544 34566667999996 699999999998764
No 9
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=29.95 E-value=36 Score=34.94 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhCCCCCcccccCCccchH
Q 037117 316 IKRVITLVKRDMPHISTFATISPIPGFI 343 (529)
Q Consensus 316 IKrVV~~L~~e~P~lktF~TLSPIPGF~ 343 (529)
+++.++.|++-.|++|---|.||||=.+
T Consensus 154 l~~~~~~l~~~nP~~kiilTVSPVrl~~ 181 (251)
T PF08885_consen 154 LEAIIDLLRSINPDIKIILTVSPVRLIA 181 (251)
T ss_pred HHHHHHHHHhhCCCceEEEEeccchhhc
Confidence 5677888888999999999999999554
No 10
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=28.55 E-value=41 Score=35.47 Aligned_cols=63 Identities=25% Similarity=0.436 Sum_probs=45.9
Q ss_pred HHHHHHhhccCCcccCCchhhhhhhhHHHHHHHHHHhhhhcCCCCCCccccccccCcchhhhcccCcCC
Q 037117 402 ERMLNLLTSKNHEWSNFAPLLSILKTPLLRLCARYLLQEKKRGKALDSVANFHLQNGAMIERINWMADR 470 (529)
Q Consensus 402 ~~l~~~L~~~~~~w~~d~~l~~~lk~~L~rLaA~YL~~eK~~g~~lDPVA~FHLgNGA~leRlNw~aD~ 470 (529)
..|..+|.. ..... +--..|++ |=|=|||--.||.||++|.||..+-++--=-+=|--|.|--
T Consensus 116 ~eLY~iLE~--h~Fs~--~~h~~LQ~--lWl~AhY~EAek~RGR~LgaV~KYRvRrKfPlPrTIWDGEe 178 (304)
T KOG0775|consen 116 RELYHILEN--HKFSP--HNHPKLQA--LWLKAHYKEAEKLRGRPLGAVDKYRVRRKFPLPRTIWDGEE 178 (304)
T ss_pred HHHHHHHHh--ccCCh--hhhHHHHH--HHHHHHHHHHHHhcCCcCCccccceeeccCCCCCccccCce
Confidence 347778876 33221 11223333 33669999999999999999999999988888888999864
No 11
>smart00351 PAX Paired Box domain.
Probab=27.75 E-value=2.8e+02 Score=25.13 Aligned_cols=26 Identities=8% Similarity=0.184 Sum_probs=22.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhhcc
Q 037117 93 LVLAKEYDLNRTQVCELIKQYLGVLG 118 (529)
Q Consensus 93 ~~La~~f~~d~~~v~~a~~~y~~~~~ 118 (529)
..+|++||+.+.-|..-++.|.+...
T Consensus 37 ~~iA~~~gvs~~tV~kwi~r~~~~G~ 62 (125)
T smart00351 37 CDISRQLCVSHGCVSKILGRYYETGS 62 (125)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 46799999999999999999987544
No 12
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=27.22 E-value=76 Score=25.67 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=20.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhh
Q 037117 92 LLVLAKEYDLNRTQVCELIKQYLGV 116 (529)
Q Consensus 92 l~~La~~f~~d~~~v~~a~~~y~~~ 116 (529)
+..||.+|+++++.|+..++.|...
T Consensus 17 ~~eLa~~~~~s~~~ve~mL~~l~~k 41 (69)
T PF09012_consen 17 LAELAREFGISPEAVEAMLEQLIRK 41 (69)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHHCC
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 6689999999999999999999753
No 13
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=26.44 E-value=4e+02 Score=22.55 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=34.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 037117 75 DFSEGYFSLCYENRRRLLLVLAKEYDLNRTQVCELIKQYLGVL 117 (529)
Q Consensus 75 ~i~~~Y~~l~~~~r~~fl~~La~~f~~d~~~v~~a~~~y~~~~ 117 (529)
.+...=-..+++++..+-..|.+.|+.++++...+++.+....
T Consensus 8 ~vA~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~ 50 (104)
T cd07313 8 EVARADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALE 50 (104)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 3344445678889999889999999999999999998887654
No 14
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=25.40 E-value=73 Score=28.46 Aligned_cols=37 Identities=8% Similarity=0.078 Sum_probs=28.3
Q ss_pred cCCCCchhHhhhhCCCceEEEeecCCCC-----CCCeEEEee
Q 037117 230 HPISNLLDLKRRLGVGRRCFGYLHAAIP-----GEPLIFIEV 266 (529)
Q Consensus 230 H~I~~W~DLkrRL~~dRRCFaFFHPamP-----~EPLIFVeV 266 (529)
.+=.+|+||..-|..+--||+|++...+ ...+|||--
T Consensus 37 ~~~~~~~el~~~l~~~~~ry~~~~~~~~~~~~~~~k~vfI~w 78 (127)
T smart00102 37 STEDSYDEFVEELPEDECRYALYDYKFTTEESKKSKIVFIFW 78 (127)
T ss_pred CCCCCHHHHHHhCCccCceEEEEEeecccCCCccccEEEEEE
Confidence 4446899999999888889999998765 344666554
No 15
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=24.36 E-value=2.2e+02 Score=28.39 Aligned_cols=106 Identities=20% Similarity=0.178 Sum_probs=58.4
Q ss_pred cCCCCchhHhhhhC-CCceEEEeecCCCCCCCeEEEeeecccchhhh-HHhhhcCC--CCCC-----------CCCCceE
Q 037117 230 HPISNLLDLKRRLG-VGRRCFGYLHAAIPGEPLIFIEVALLKNVAQT-IQEVLWDD--PPIP-----------ECEATCA 294 (529)
Q Consensus 230 H~I~~W~DLkrRL~-~dRRCFaFFHPamP~EPLIFVeVALt~~ia~s-Iq~iL~~~--~~~~-----------~~~a~tA 294 (529)
|==.+.+||++=++ |+-++|+..++.- .+.+.+++||+--+|+.. |+.++... +..+ ..++-+-
T Consensus 10 HYrnsPnDL~~LlDaP~h~l~~l~~~~~-p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l 88 (196)
T PF13718_consen 10 HYRNSPNDLQLLLDAPNHRLFVLLQPGD-PDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQL 88 (196)
T ss_dssp SSSB-HHHHHHHHH-TTEEEEEEE-SS---SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGS
T ss_pred hcCCCHHHHHHHhcCCcceeehhccCCC-ceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhh
Confidence 55568899999997 8999999998765 489999999999999876 55555432 2211 0111111
Q ss_pred EEEee--cccccCcccccchhhHHHHHHHHHHhhCCCCCccccc
Q 037117 295 LFYSI--SSTQRGLAGINLGKFLIKRVITLVKRDMPHISTFATI 336 (529)
Q Consensus 295 iFYSI--SntQ~GL~GIsfGNfLIKrVV~~L~~e~P~lktF~TL 336 (529)
-..=| =.+++-+++..+|..||+.+.+..+.+++.+.+-.+.
T Consensus 89 ~g~RIvRIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~ 132 (196)
T PF13718_consen 89 SGARIVRIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKE 132 (196)
T ss_dssp EEEEEEEEEE-CCC-SSSHHHHHHHHHHHT--------------
T ss_pred cceeEEEEEEChhhhcCCHHHHHHHHHHHHHhhhcccccccccc
Confidence 11111 1468999999999999999999998887777665554
No 16
>PF09150 Carot_N: Orange carotenoid protein, N-terminal ; InterPro: IPR015233 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Orange carotenoid-binding proteins (OCP) were first identified in cyanobacterial species, where they occur associated with phycobilisome in the cellular thylakoid membrane. These proteins function in photoprotection, and are essential for inhibiting white and blue-green light non-photochemical quenching (NPQ) [, ]. Carotenoids improve the photoprotectant activity by broadening OCP's absorption spectrum and facilitating the dissipation of absorbed energy. OCP acts as a homodimer, and binds one molecule of carotenoid (3'-hydroxyechinenone) and one chloride ion per subunit, where the carotenoid binding site is lined with a striking number of methionine residues. The carotenoid 3'-hydroxyechinenone is not found in higher plants. OCP has two domains: an N-terminal helical domain and a C-terminal domain that resembles a NTF2 (nuclear transport factor 2) domain. OCP can be proteolytically cleaved into a red form (RCP), which lacks 15 residues from the N terminus and approximately 150 residues from the C terminus []. This entry represents the N-terminal domain found predominantly in prokaryotic orange carotenoid proteins and related carotenoid-binding proteins. It adopts an alpha-helical structure consisting of two four-helix bundles [].; GO: 0031404 chloride ion binding, 0016037 light absorption, 0030089 phycobilisome; PDB: 3MG3_B 3MG1_A 3MG2_A 1M98_A.
Probab=24.35 E-value=1.7e+02 Score=28.57 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCH
Q 037117 70 DTVLNDFSEGYFSLCYENRRRLLLVLAKEYDLNR 103 (529)
Q Consensus 70 ~~~a~~i~~~Y~~l~~~~r~~fl~~La~~f~~d~ 103 (529)
+.-+.++++.-..|+-+++..||+..+.++|.||
T Consensus 126 s~~a~~vl~~I~~Ldf~QQItvlR~~V~~MG~dp 159 (159)
T PF09150_consen 126 SENANEVLEAIKQLDFEQQITVLRNIVVDMGFDP 159 (159)
T ss_dssp -HHHHHHHHHHHCS-HHHHHHHHHHHHHT-SS--
T ss_pred CHHHHHHHHHHHcCChhhHHHHHHHHHHHcCCCC
Confidence 3456789999999999999999999999999986
No 17
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=23.95 E-value=91 Score=25.07 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHH
Q 037117 92 LLVLAKEYDLNRTQVCELIKQY 113 (529)
Q Consensus 92 l~~La~~f~~d~~~v~~a~~~y 113 (529)
..+.+++||+..++|.+|+++.
T Consensus 23 v~ywa~~~gvt~~~L~~AV~~v 44 (57)
T PF12244_consen 23 VRYWAKRFGVTEEQLREAVRAV 44 (57)
T ss_pred HHHHHHHHCcCHHHHHHHHHHH
Confidence 5678999999999999999886
No 18
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=23.51 E-value=2e+02 Score=23.78 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhccCccchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037117 50 FEHVRDSMHSAISMNKTEVIDTVLNDFSEGYFSLCYENRRRLLLVLA 96 (529)
Q Consensus 50 ~~~~~~~~~~~~~~~~~ev~~~~a~~i~~~Y~~l~~~~r~~fl~~La 96 (529)
.+..|+.|.+-|..++-.- ..-.++++..|.+|+..+-..+...-.
T Consensus 5 ~~DFr~SM~EMI~~~~i~~-~~~LeeLL~cYL~LN~~~~H~~Iv~aF 50 (59)
T PF04844_consen 5 YEDFRESMVEMIEENGIRD-WDDLEELLACYLSLNSPEHHKFIVEAF 50 (59)
T ss_pred HHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCChhhhhHHHHHH
Confidence 3446788888888887653 345689999999999988777654433
No 19
>PF09150 Carot_N: Orange carotenoid protein, N-terminal ; InterPro: IPR015233 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Orange carotenoid-binding proteins (OCP) were first identified in cyanobacterial species, where they occur associated with phycobilisome in the cellular thylakoid membrane. These proteins function in photoprotection, and are essential for inhibiting white and blue-green light non-photochemical quenching (NPQ) [, ]. Carotenoids improve the photoprotectant activity by broadening OCP's absorption spectrum and facilitating the dissipation of absorbed energy. OCP acts as a homodimer, and binds one molecule of carotenoid (3'-hydroxyechinenone) and one chloride ion per subunit, where the carotenoid binding site is lined with a striking number of methionine residues. The carotenoid 3'-hydroxyechinenone is not found in higher plants. OCP has two domains: an N-terminal helical domain and a C-terminal domain that resembles a NTF2 (nuclear transport factor 2) domain. OCP can be proteolytically cleaved into a red form (RCP), which lacks 15 residues from the N terminus and approximately 150 residues from the C terminus []. This entry represents the N-terminal domain found predominantly in prokaryotic orange carotenoid proteins and related carotenoid-binding proteins. It adopts an alpha-helical structure consisting of two four-helix bundles [].; GO: 0031404 chloride ion binding, 0016037 light absorption, 0030089 phycobilisome; PDB: 3MG3_B 3MG1_A 3MG2_A 1M98_A.
Probab=23.20 E-value=1.8e+02 Score=28.38 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=22.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhc
Q 037117 74 NDFSEGYFSLCYENRRRLLLVLAKEY 99 (529)
Q Consensus 74 ~~i~~~Y~~l~~~~r~~fl~~La~~f 99 (529)
..|++.|..++...|+.|+-.|++-+
T Consensus 86 t~isR~Y~~ls~n~KL~fWY~Lae~M 111 (159)
T PF09150_consen 86 TPISRAYGALSANTKLGFWYQLAEGM 111 (159)
T ss_dssp -HHHHHHHCC-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHhccCCcchHHHHHHHHHHh
Confidence 46899999999999999999999876
No 20
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=22.70 E-value=51 Score=33.34 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=25.8
Q ss_pred CcccccchhhHHHHHHHHHHhhCCCCCcccccCCccc
Q 037117 305 GLAGINLGKFLIKRVITLVKRDMPHISTFATISPIPG 341 (529)
Q Consensus 305 GL~GIsfGNfLIKrVV~~L~~e~P~lktF~TLSPIPG 341 (529)
=|.|.|||-+.=-+|+. ..|....|...||.++
T Consensus 106 ~l~GfSFGa~Ia~~la~----r~~e~~~~is~~p~~~ 138 (210)
T COG2945 106 WLAGFSFGAYIAMQLAM----RRPEILVFISILPPIN 138 (210)
T ss_pred hhcccchHHHHHHHHHH----hcccccceeeccCCCC
Confidence 47999999998777665 4566777888888887
No 21
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=22.24 E-value=90 Score=27.66 Aligned_cols=35 Identities=9% Similarity=0.148 Sum_probs=28.7
Q ss_pred CCchhHhhhhCCCceEEEeecCCCC-----CCCeEEEeee
Q 037117 233 SNLLDLKRRLGVGRRCFGYLHAAIP-----GEPLIFIEVA 267 (529)
Q Consensus 233 ~~W~DLkrRL~~dRRCFaFFHPamP-----~EPLIFVeVA 267 (529)
.+|+||+.=|..+=-||++++...+ ..++|||.-.
T Consensus 46 ~~~~~l~~~l~~~~~~y~~~~~~~~~~~~~~~k~vfI~w~ 85 (132)
T cd00013 46 ESFDEFVEELPEDECRYALYDYDFTTEGSKKSKIVFIYWS 85 (132)
T ss_pred CCHHHHHHhCCcCCceEEEEEecccCCCccccCEEEEEEC
Confidence 3899999999888889999999876 4678887653
No 22
>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568. This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.
Probab=21.12 E-value=2.1e+02 Score=24.19 Aligned_cols=45 Identities=22% Similarity=0.312 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhccCccchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037117 50 FEHVRDSMHSAISMNKTEVIDTVLNDFSEGYFSLCYENRRRLLLV 94 (529)
Q Consensus 50 ~~~~~~~~~~~~~~~~~ev~~~~a~~i~~~Y~~l~~~~r~~fl~~ 94 (529)
....|+.|.+-|..++....-.-.++++..|.+|+..+-..+...
T Consensus 11 y~DFr~SM~EMI~~~~i~~~w~~LeeLL~cYL~LN~~~~H~~Iv~ 55 (66)
T TIGR01568 11 YEDFRRSMEEMIEERELEADWKELEELLACYLDLNPKKSHRFIVR 55 (66)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCchhhhHHHH
Confidence 344677888888877543211456899999999999887776543
No 23
>COG1583 CRISPR system related protein, RAMP superfamily [Defense mechanisms]
Probab=20.92 E-value=37 Score=34.94 Aligned_cols=9 Identities=67% Similarity=0.962 Sum_probs=8.2
Q ss_pred cccccCCcc
Q 037117 332 TFATISPIP 340 (529)
Q Consensus 332 tF~TLSPIP 340 (529)
+|.|||||=
T Consensus 123 ~F~TLSPIv 131 (240)
T COG1583 123 TFITLSPIV 131 (240)
T ss_pred eEEecCCEE
Confidence 999999994
No 24
>PF13518 HTH_28: Helix-turn-helix domain
Probab=20.89 E-value=1.3e+02 Score=22.14 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhh
Q 037117 92 LLVLAKEYDLNRTQVCELIKQYLGV 116 (529)
Q Consensus 92 l~~La~~f~~d~~~v~~a~~~y~~~ 116 (529)
...+|.+||+++..|..-++.|.+.
T Consensus 15 ~~~~a~~~gis~~tv~~w~~~y~~~ 39 (52)
T PF13518_consen 15 VREIAREFGISRSTVYRWIKRYREG 39 (52)
T ss_pred HHHHHHHHCCCHhHHHHHHHHHHhc
Confidence 4568999999999999999999863
No 25
>PF11015 DUF2853: Protein of unknown function (DUF2853); InterPro: IPR021274 This bacterial family of proteins has no known function. ; PDB: 2PYQ_B.
Probab=20.73 E-value=97 Score=28.22 Aligned_cols=59 Identities=15% Similarity=0.289 Sum_probs=37.5
Q ss_pred CCCChhhHHHHHHH-HHHhhccCccchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhcCC
Q 037117 43 ANKPQRDFEHVRDS-MHSAISMNKTEVIDTVLNDFSEGYFSL-CYENRRRLLLVLAKEYDL 101 (529)
Q Consensus 43 ~~~~~~~~~~~~~~-~~~~~~~~~~ev~~~~a~~i~~~Y~~l-~~~~r~~fl~~La~~f~~ 101 (529)
++.++.++++|++- +..-+....++-.+..-..+++.|..- -..-|.-|.=.|+++||-
T Consensus 39 s~Sd~~ELe~Vk~nfl~KKLGl~d~~~ld~aI~~V~e~mg~s~r~K~R~~~YYlLak~fgk 99 (102)
T PF11015_consen 39 SCSDPKELERVKENFLIKKLGLSDDPELDAAINKVCEKMGKSNRNKYRAVFYYLLAKHFGK 99 (102)
T ss_dssp -TT-HHHHHHHHHHCCCCCT---SSHHHHHHHHHHHHHH-TT-S--BHHHHHHHHHHHTT-
T ss_pred ccCCHHHHHHHHHhHHHHHcCCCCcHHHHHHHHHHHHHhccccCCCceeehHHHHHHHhCc
Confidence 67888999999664 333333333333355557899999998 678899999999999973
No 26
>PF10410 DnaB_bind: DnaB-helicase binding domain of primase; InterPro: IPR019475 This entry represents the C-terminal region three-helical domain of DNA primase []. Primases synthesise short RNA strands on single-stranded DNA templates, thereby generating the hybrid duplexes required for the initiation of synthesis by DNA polymerases. Primases are recruited to single-stranded DNA by helicases - this domain binds DnaB-helicase []. It is associated with the Toprim domain IPR006171 from INTERPRO, which is the central catalytic core. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=20.39 E-value=2.8e+02 Score=21.17 Aligned_cols=34 Identities=9% Similarity=0.044 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCHHH
Q 037117 72 VLNDFSEGYFSL-CYENRRRLLLVLAKEYDLNRTQ 105 (529)
Q Consensus 72 ~a~~i~~~Y~~l-~~~~r~~fl~~La~~f~~d~~~ 105 (529)
.+.++...-..+ ++-.|..+++.||+.+|++.+.
T Consensus 24 ~~~~~~~~i~~i~~~i~r~~y~~~la~~~~i~~~~ 58 (59)
T PF10410_consen 24 AVREAAPLIAQIPDPIERELYIRELAERLGISEDA 58 (59)
T ss_dssp HHHHHHHHHTT--SHHHHHHHHHHHHHHCT-SSTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCcCccc
Confidence 556777777777 6788999999999999998764
Done!