Query 037117
Match_columns 529
No_of_seqs 143 out of 250
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 14:49:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ygw_A Malonyl-COA decarboxyla 100.0 2E-161 5E-166 1261.6 34.6 416 70-517 35-456 (460)
2 2l72_A Tgadf, actin depolymeri 48.5 8.4 0.00029 34.4 2.3 30 234-266 66-95 (139)
3 1hqz_1 ABP1P, actin-binding pr 40.6 15 0.00052 32.1 2.7 31 234-264 51-84 (141)
4 1v6f_A MGMF-beta, GLIA maturat 36.2 18 0.0006 32.4 2.4 35 232-266 57-97 (151)
5 2w0i_A Twinfilin-2; cytoskelet 33.3 12 0.00042 32.7 0.9 35 232-266 41-80 (135)
6 2i2q_A Cofilin; N-terminal ser 32.5 16 0.00055 31.7 1.5 35 232-266 47-86 (137)
7 1vkk_A GMF-gamma, GLIA maturat 32.1 22 0.00075 32.1 2.4 35 232-266 63-103 (154)
8 1cnu_A Actophorin, ADF, cofili 30.8 13 0.00043 32.3 0.5 35 232-266 45-84 (137)
9 3ihu_A Transcriptional regulat 29.5 2.4E+02 0.0082 25.7 9.1 33 83-116 34-66 (222)
10 1f7s_A Actin depolymerizing fa 29.0 22 0.00075 31.1 1.8 35 231-265 49-89 (139)
11 2d8b_A Twinfilin-1; cell-free 28.7 14 0.00047 33.8 0.4 35 232-266 66-105 (166)
12 2kd5_A ADF H, actin severing a 28.2 20 0.00068 31.6 1.4 35 232-266 47-86 (144)
13 1cfy_A Cofilin; actin-binding, 26.2 20 0.00069 31.3 1.0 37 229-265 44-87 (143)
14 2kvk_A Actin severing and dyna 24.4 23 0.00078 31.4 1.0 40 227-266 41-86 (144)
15 3q2b_A Pfadf1, cofilin/actin-d 23.6 42 0.0014 29.1 2.6 33 232-267 46-81 (124)
16 2xfa_A Actin depolymerization 22.7 23 0.00077 31.3 0.7 34 233-266 58-97 (148)
17 4abx_A DNA repair protein RECN 22.4 2.7E+02 0.0093 25.1 7.9 30 86-115 128-157 (175)
18 2hfk_A Pikromycin, type I poly 22.1 84 0.0029 29.9 4.6 89 233-340 105-200 (319)
19 3h04_A Uncharacterized protein 21.8 82 0.0028 27.3 4.1 86 237-347 51-137 (275)
20 3tej_A Enterobactin synthase c 21.2 1.9E+02 0.0066 27.6 7.0 97 229-343 107-207 (329)
21 2lfc_A Fumarate reductase, fla 20.4 65 0.0022 28.7 3.2 27 91-117 97-123 (160)
22 3ffy_A Putative tetrapyrrole ( 20.1 19 0.00064 30.9 -0.4 59 199-262 20-86 (115)
No 1
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-161 Score=1261.62 Aligned_cols=416 Identities=41% Similarity=0.683 Sum_probs=359.2
Q ss_pred HHHHHHHHHHHhcCCHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcccccccCCCCcccccchhHHHHHHHHHhccc
Q 037117 70 DTVLNDFSEGYFSLCYE-NRRRLLLVLAKEYDLNRTQVCELIKQYLGVLGEEAQSAGHEEDGVLGSFYRIERNLRHALKP 148 (529)
Q Consensus 70 ~~~a~~i~~~Y~~l~~~-~r~~fl~~La~~f~~d~~~v~~a~~~y~~~~~~e~~~~~~~~~~~~~a~~~ae~~Lr~aleP 148 (529)
.++|++|++.|.+|+++ +|++||..||++||||+++|.+|+++|++..+. ..+.++.++++.+|++|++|
T Consensus 35 e~~a~~i~~~Y~~l~~~~~r~~fl~~La~~f~~d~~~v~~a~~~y~~~~~~---------~~~~~~~~~~~~~L~~aleP 105 (460)
T 2ygw_A 35 EGQCADFVSFYGGLAETAQRAELLGRLARGFGVDHGQVAEQSAGVLHLRQQ---------QREAAVLLQAEDRLRYALVP 105 (460)
T ss_dssp -CHHHHHHHHHHTCCSHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHTC-----------CCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccC---------CcchhHHHHHHHHHHHhccc
Confidence 44999999999999999 999999999999999999999999999985441 12223467899999999999
Q ss_pred cHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhcc--chhHHHHhHHHHHHHHhccCcccceeeecCCCCcHHHHHHHHhh
Q 037117 149 MYEGLFERLNMHPGGLKVLTSLRADILSILAEEN--IASLRALDSYLKEKLGTWLSPAALELHQITWDDPASLLEKIVAY 226 (529)
Q Consensus 149 ~r~~Lfrrln~~pgG~kfLV~mRaDLL~~l~~~~--~p~L~aLD~dL~~LlssWF~~GfL~L~rItW~SPA~iLEKIi~Y 226 (529)
+|++||+|||++||||+|||+||+|||+++++++ .|+|++||.||+|||++|||+|||+|+||||+|||+||||||+|
T Consensus 106 ~r~~L~~rln~~pgG~~fLV~mRaDLL~~l~~~~~~~~~L~~Ld~dl~~LlssWF~~GfL~L~rItW~SPA~iLEKIi~Y 185 (460)
T 2ygw_A 106 RYRGLFHHISKLDGGVRFLVQLRADLLEAQALKLVEGPDVREMNGVLKGMLSEWFSSGFLNLERVTWHSPCEVLQKISEA 185 (460)
T ss_dssp TTHHHHHHHHTSTTHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHTCGGGEEEEEECTTSCHHHHHHHHHS
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHcCccceeeeeccCCCcHHHHHHHHHh
Confidence 9999999999999999999999999999998763 47999999999999999999999999999999999999999999
Q ss_pred ccccCCCCchhHhhhhCCCceEEEeecCCCCCCCeEEEeeecccchhhhHHhhhcCCCC-CCC--CCCceEEEEeecccc
Q 037117 227 EAVHPISNLLDLKRRLGVGRRCFGYLHAAIPGEPLIFIEVALLKNVAQTIQEVLWDDPP-IPE--CEATCALFYSISSTQ 303 (529)
Q Consensus 227 EAVH~I~~W~DLkrRL~~dRRCFaFFHPamP~EPLIFVeVALt~~ia~sIq~iL~~~~~-~~~--~~a~tAiFYSISntQ 303 (529)
||||||+||+||||||||||||||||||+||+|||||||||||++||+|||+||++..+ .++ .+++|||||||||||
T Consensus 186 EAVH~I~~W~DLkrRL~pdRRCfaFFHp~mP~EPLIfVeVALt~~ia~sIq~iL~~~~~~~~~~~~~~~tAIFYSISntQ 265 (460)
T 2ygw_A 186 EAVHPVKNWMDMKRRVGPYRRCYFFSHCSTPGEPLVVLHVALTGDISSNIQAIVKEHPPSETAAANKITAAIFYSISLTQ 265 (460)
T ss_dssp CCSSCCCSHHHHHHHTSTTEEEEEEEETTBTTCCSEEEEEEEESSCCCCSHHHHSCCCCC------CCCEEEEEEEEESC
T ss_pred ccccccCCHHHHHHhcCCCCeEEEecCCCCCCCCeEEEeeccccchhhHHHHHhcCCCCcccccccCCCeEEEEeecccc
Confidence 99999999999999999999999999999999999999999999999999999987643 333 445699999999999
Q ss_pred cCcccccchhhHHHHHHHHHHhhCCCCCcccccCCccchHHHHHhhhhhhhhhhhhcccccccccccccchhcccCChHH
Q 037117 304 RGLAGINLGKFLIKRVITLVKRDMPHISTFATISPIPGFIQWLLSKLASQSKLAEVNDISQSSADRSGSAFRENILEPEE 383 (529)
Q Consensus 304 ~GL~GIsfGNfLIKrVV~~L~~e~P~lktF~TLSPIPGF~~WL~~~l~~~~~~~~~~~~~~~~~~~~~~~f~e~~l~~~e 383 (529)
+||+|||||||||||||++|++|||+||||+||||||||++||.++++.+... .+....|++ .+
T Consensus 266 ~GL~GIsfGnfLIKrVV~~L~~E~P~lktF~TLSPIPGF~~WL~~~l~~~~~~-----------~~~~~~l~~-----~~ 329 (460)
T 2ygw_A 266 QGLQGVELGTFLIKRVVKELQREFPHLGVFSSLSPIPGFTKWLLGLLNSQTKE-----------HGRNELFTD-----SE 329 (460)
T ss_dssp GGGTTSCHHHHHHHHHHHHHHHHCTTCCEEEECBC-CCHHHHHHHHCC--------------------------------
T ss_pred cccccccchhHHHHHHHHHHHHhCcCccceeecCCCccHHHHHHHHhhhhhhc-----------ccccccccH-----HH
Confidence 99999999999999999999999999999999999999999999887544321 001122222 22
Q ss_pred HHHHhhhhHHhhhccchHHHHHHHhhccCCcccCCchhhhhhhhHHHHHHHHHHhhhhcCCCCCCccccccccCcchhhh
Q 037117 384 EKALMDLSEEFVAGKNGMERMLNLLTSKNHEWSNFAPLLSILKTPLLRLCARYLLQEKKRGKALDSVANFHLQNGAMIER 463 (529)
Q Consensus 384 ~~~~~~~~~e~~~~~~~~~~l~~~L~~~~~~w~~d~~l~~~lk~~L~rLaA~YL~~eK~~g~~lDPVA~FHLgNGA~leR 463 (529)
.+++.. ..+.....+|..++.. .+|+.|+++.+.++++||+||||||++||++|+|+||||||||||||+|||
T Consensus 330 ~~~l~~-----~~~~~~~~~l~~L~~~--~~w~~d~~l~~~l~~~L~rLaA~YL~~eK~~G~~lDPVA~FHLgNGA~v~r 402 (460)
T 2ygw_A 330 CKEISE-----ITGGPINETLKLLLSS--SEWVQSEKLVRALQTPLMRLCAWYLYGEKHRGYALNPVANFHLQNGAVLWR 402 (460)
T ss_dssp -----------------CTHHHHHHTT--TGGGGCHHHHHHTHHHHHHHHHHHHHTCEETTEESSHHHHHHHHTTCEEEE
T ss_pred HHHHhh-----ccccchHHHHHHHhcc--cccccchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchhccccCcceeee
Confidence 223321 1122122345555544 699999999999999999999999999999999999999999999999999
Q ss_pred cccCcCCChhhhhcccceeeecccccccHHHHHHHHHhcCceeecHHHHHhhcc
Q 037117 464 INWMADRSENGLHQSAGIMVNYVYRLENIEEYAQSYFSTGQIHASDDVCRYVEP 517 (529)
Q Consensus 464 lNw~aD~S~kGl~qS~GiMVNYlY~L~~ie~nhe~Y~~~g~I~aS~~V~~l~~~ 517 (529)
|||+||+|+||++|||||||||+|+|++||+||++|..+|+|++|++|++|++.
T Consensus 403 lNw~aD~S~kGl~qS~GlMVNYlY~L~~ie~N~e~y~~~g~I~aS~~V~~l~~~ 456 (460)
T 2ygw_A 403 INWMADVSLRGITGSCGLMANYRYFLEETGPNSTSYLGSKIIKASEQVLSLVAQ 456 (460)
T ss_dssp EETTSCCSHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHCCCCBCHHHHHHHHH
T ss_pred eccccccChhhHhhhcceeeeeeecHHHHHHHHHHHHhCCceecCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999854
No 2
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=48.51 E-value=8.4 Score=34.43 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=26.4
Q ss_pred CchhHhhhhCCCceEEEeecCCCCCCCeEEEee
Q 037117 234 NLLDLKRRLGVGRRCFGYLHAAIPGEPLIFIEV 266 (529)
Q Consensus 234 ~W~DLkrRL~~dRRCFaFFHPamP~EPLIFVeV 266 (529)
+|+||...|.++.-||+||. .+.++|||--
T Consensus 66 ~~~el~~~Lp~~~prY~~y~---dg~k~vFI~w 95 (139)
T 2l72_A 66 NADEFRGALPANDCRFGVYD---CGNKIQFVLW 95 (139)
T ss_dssp HHHHHHHHCCCCSCCEEEEE---CSSCEEEEEE
T ss_pred CHHHHHHhCCCCCcEEEEEc---CCCcEEEEEE
Confidence 89999999999999999999 4588888754
No 3
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2
Probab=40.64 E-value=15 Score=32.09 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=23.9
Q ss_pred CchhHhhhhCCCceEEEeecCCCCC---CCeEEE
Q 037117 234 NLLDLKRRLGVGRRCFGYLHAAIPG---EPLIFI 264 (529)
Q Consensus 234 ~W~DLkrRL~~dRRCFaFFHPamP~---EPLIFV 264 (529)
+++||...|..+..||+|+.-.-++ .++|||
T Consensus 51 ~~~el~~~l~~~~~rY~~~~~~~~~~~~~k~vfI 84 (141)
T 1hqz_1 51 SFHDFLQLFDETKVQYGLARVSPPGSDVEKIIII 84 (141)
T ss_dssp CHHHHHTCCCTTSCEEEEEEECCTTCSCCEEEEE
T ss_pred CHHHHHhhCCCCceEEEEEEEecCCCceeeEEEE
Confidence 9999999998899999999755222 455555
No 4
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2
Probab=36.24 E-value=18 Score=32.37 Aligned_cols=35 Identities=23% Similarity=0.088 Sum_probs=28.1
Q ss_pred CCCchhHhhhhCCCceEEEeecCCCC------CCCeEEEee
Q 037117 232 ISNLLDLKRRLGVGRRCFGYLHAAIP------GEPLIFIEV 266 (529)
Q Consensus 232 I~~W~DLkrRL~~dRRCFaFFHPamP------~EPLIFVeV 266 (529)
-.+++||...|..+.-||+||+...+ ..++|||--
T Consensus 57 ~~~~~el~~~Lp~~~prY~~~~~~~~~~~~~~~~k~vfI~w 97 (151)
T 1v6f_A 57 GVSPDELKDELPERQPRFIVYSYKYQHDDGRVSYPLCFIFS 97 (151)
T ss_dssp SCCHHHHGGGSCSSSCEEEEEECCEECTTSCEECCEEEEEE
T ss_pred CCCHHHHHhhCCCCCceEEEEecccccCCCcccccEEEEEE
Confidence 45899999999999999999988653 357787743
No 5
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens}
Probab=33.32 E-value=12 Score=32.68 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=28.6
Q ss_pred CCCchhHhhhhCCCceEEEeecCCCC-----CCCeEEEee
Q 037117 232 ISNLLDLKRRLGVGRRCFGYLHAAIP-----GEPLIFIEV 266 (529)
Q Consensus 232 I~~W~DLkrRL~~dRRCFaFFHPamP-----~EPLIFVeV 266 (529)
-.+|+||...|..+..||+||+...+ .+++|||--
T Consensus 41 ~~~~~el~~~Lp~~~~rY~~y~~~~~~~~~~~~k~vfI~w 80 (135)
T 2w0i_A 41 PTDVAQLPSRVPRDAARYHFFLYKHTHEGDPLESVVFIYS 80 (135)
T ss_dssp CCCGGGGGGGSCSSSCEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCHHHHHhhCCCCCcEEEEEecccccCCCCCccEEEEEE
Confidence 56899999999999999999987664 367888743
No 6
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe}
Probab=32.47 E-value=16 Score=31.71 Aligned_cols=35 Identities=11% Similarity=0.042 Sum_probs=27.4
Q ss_pred CCCchhHhhhhCCCceEEEeecCCCCC-----CCeEEEee
Q 037117 232 ISNLLDLKRRLGVGRRCFGYLHAAIPG-----EPLIFIEV 266 (529)
Q Consensus 232 I~~W~DLkrRL~~dRRCFaFFHPamP~-----EPLIFVeV 266 (529)
-.+++||...|..+--||+|+.-..+. .++|||--
T Consensus 47 ~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~~~k~vfI~w 86 (137)
T 2i2q_A 47 DKDFDTFLGDLPEKDCRYAIYDFEFNLGEGVRNKIIFISW 86 (137)
T ss_dssp CCCHHHHHHTSCSSSCEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred CCCHHHHHHhCCCcCceEEEEEeeeecCCCCccCEEEEEE
Confidence 468999999999999999999875432 47777653
No 7
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A
Probab=32.06 E-value=22 Score=32.06 Aligned_cols=35 Identities=23% Similarity=0.086 Sum_probs=28.6
Q ss_pred CCCchhHhhhhCCCceEEEeecCCCC------CCCeEEEee
Q 037117 232 ISNLLDLKRRLGVGRRCFGYLHAAIP------GEPLIFIEV 266 (529)
Q Consensus 232 I~~W~DLkrRL~~dRRCFaFFHPamP------~EPLIFVeV 266 (529)
-.+++||...|..+-.||+||....+ .+|+|||--
T Consensus 63 ~~~~~e~~~~Lp~~~pRY~vy~~~~~~~~g~~~~klvFI~w 103 (154)
T 1vkk_A 63 NISPEELKLELPERQPRFVVYSYKYVHDDGRVSYPLCFIFS 103 (154)
T ss_dssp SCCHHHHHHHSCSSSCEEEEEECCEECTTSCEECCEEEEEE
T ss_pred CCCHHHHHHhCCCCCcEEEEEEeeeccCCCcccccEEEEEE
Confidence 46899999999999999999987643 478888743
No 8
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A
Probab=30.83 E-value=13 Score=32.35 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=27.3
Q ss_pred CCCchhHhhhhCCCceEEEeecCCCCC-----CCeEEEee
Q 037117 232 ISNLLDLKRRLGVGRRCFGYLHAAIPG-----EPLIFIEV 266 (529)
Q Consensus 232 I~~W~DLkrRL~~dRRCFaFFHPamP~-----EPLIFVeV 266 (529)
-.+++||...|..+--||+|+.-..+. .++|||--
T Consensus 45 ~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~~~k~vfI~w 84 (137)
T 1cnu_A 45 NATYEDFKSQLPERDCRYAIFDYEFQVDGGQRNKITFILW 84 (137)
T ss_dssp TCCHHHHHTTSCTTSCEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCHHHHHHhCCCCCceEEEEEeeeecCCCCccCEEEEEE
Confidence 368999999999999999999875532 46666543
No 9
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=29.55 E-value=2.4e+02 Score=25.71 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 037117 83 LCYENRRRLLLVLAKEYDLNRTQVCELIKQYLGV 116 (529)
Q Consensus 83 l~~~~r~~fl~~La~~f~~d~~~v~~a~~~y~~~ 116 (529)
+.+.+|+. -..||++|||.+.-|++|+......
T Consensus 34 l~pG~~L~-E~~La~~lgVSRtpVREAl~~L~~e 66 (222)
T 3ihu_A 34 FVPGQRLV-ETDLVAHFGVGRNSVREALQRLAAE 66 (222)
T ss_dssp SCTTCEEC-HHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCccC-HHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 44455555 6789999999999999999998754
No 10
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2
Probab=28.98 E-value=22 Score=31.07 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=27.1
Q ss_pred CCCCchhHhhhhCCCceEEEeecCCCC------CCCeEEEe
Q 037117 231 PISNLLDLKRRLGVGRRCFGYLHAAIP------GEPLIFIE 265 (529)
Q Consensus 231 ~I~~W~DLkrRL~~dRRCFaFFHPamP------~EPLIFVe 265 (529)
+..+|+||..-|..+.-||+++.-..+ ..++|||-
T Consensus 49 ~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vfI~ 89 (139)
T 1f7s_A 49 PIQTYEEFAACLPADECRYAIYDFDFVTAENCQKSKIFFIA 89 (139)
T ss_dssp SSCCHHHHHTTSCTTSCEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCCHHHHHHhCCCCCceEEEEEeeeeccccCcccCEEEEE
Confidence 356999999999888889999987543 24777764
No 11
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus}
Probab=28.74 E-value=14 Score=33.76 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=28.5
Q ss_pred CCCchhHhhhhCCCceEEEeecCCCC-----CCCeEEEee
Q 037117 232 ISNLLDLKRRLGVGRRCFGYLHAAIP-----GEPLIFIEV 266 (529)
Q Consensus 232 I~~W~DLkrRL~~dRRCFaFFHPamP-----~EPLIFVeV 266 (529)
-.+++||...|..+..||+||+...+ .+++|||--
T Consensus 66 ~~~~~el~~~Lp~~~pRY~~y~~~~~~~~~~~~k~vFI~w 105 (166)
T 2d8b_A 66 NTELRDLPKRIPKDSARYHFFLYKHSHEGDYLESVVFIYS 105 (166)
T ss_dssp CCCSTTHHHHSCSSCCEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCCHHHHHHhCCCCCceEEEEeccccCCCCccccEEEEEE
Confidence 46899999999999999999987653 378888743
No 12
>2kd5_A ADF H, actin severing and dynamics regulatory protein; cofilin, solution structure, hormone; NMR {Leishmania donovani} PDB: 2kvk_A
Probab=28.22 E-value=20 Score=31.63 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=28.2
Q ss_pred CCCchhHhhhhCCCceEEEeecCCCC-----CCCeEEEee
Q 037117 232 ISNLLDLKRRLGVGRRCFGYLHAAIP-----GEPLIFIEV 266 (529)
Q Consensus 232 I~~W~DLkrRL~~dRRCFaFFHPamP-----~EPLIFVeV 266 (529)
-.+|+||..-|..+.-||+|+.-..+ ..++|||--
T Consensus 47 ~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~~~k~vfI~w 86 (144)
T 2kd5_A 47 SVNYTDLKEKFSTEKPCYVAFDFEYNDAGSKREKLILIQW 86 (144)
T ss_dssp CCCHHHHTTTTSCSSCEEEEEEEEEESSSCEEEEEEEEEE
T ss_pred CCCHHHHHHhCCccCcEEEEEEEEecCCCCCccCEEEEEE
Confidence 47899999999999999999976554 357888754
No 13
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A
Probab=26.24 E-value=20 Score=31.31 Aligned_cols=37 Identities=8% Similarity=0.135 Sum_probs=27.6
Q ss_pred ccCCCCchhHhhhhCCCceEEEeecCCCC--C-----CCeEEEe
Q 037117 229 VHPISNLLDLKRRLGVGRRCFGYLHAAIP--G-----EPLIFIE 265 (529)
Q Consensus 229 VH~I~~W~DLkrRL~~dRRCFaFFHPamP--~-----EPLIFVe 265 (529)
...-.+++||..-|.++--||+|++-..+ + .++|||-
T Consensus 44 ~g~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~~~~~k~vfI~ 87 (143)
T 1cfy_A 44 TSTDPSYDAFLEKLPENDCLYAIYDFEYEINGNEGKRSKIVFFT 87 (143)
T ss_dssp EECCCCHHHHHTTSCTTCCEEEEEEEEEECSSSCCEEEEEEEEE
T ss_pred cCCCCCHHHHHHhCCCCCcEEEEEEeeeecCCCcccccCEEEEE
Confidence 33356899999999999999999987542 2 4666653
No 14
>2kvk_A Actin severing and dynamics regulatory protein; ADF/cofilin, hormone; NMR {Leishmania donovani}
Probab=24.39 E-value=23 Score=31.39 Aligned_cols=40 Identities=25% Similarity=0.363 Sum_probs=27.1
Q ss_pred ccccC-CCCchhHhhhhCCCceEEEeecCC-----CCCCCeEEEee
Q 037117 227 EAVHP-ISNLLDLKRRLGVGRRCFGYLHAA-----IPGEPLIFIEV 266 (529)
Q Consensus 227 EAVH~-I~~W~DLkrRL~~dRRCFaFFHPa-----mP~EPLIFVeV 266 (529)
|.+.+ -.+|+||...|..+--||++|... -...++|||--
T Consensus 41 ~~~~~~~~~~~e~~~~L~~~~prY~~y~~~~~~~~~~~~k~vfI~w 86 (144)
T 2kvk_A 41 TEVGERSVNYTDLKEKFSTEKPCYVAFDFEYNDAGSKREKLILIQW 86 (144)
T ss_dssp EEEECTTCCHHHHHHTCCTTSCCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EeccCCCCCHHHHHHhCCccCceEEEEEeeeccCCCCcccEEEEEE
Confidence 34443 458999999999888889997532 23345666544
No 15
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A
Probab=23.57 E-value=42 Score=29.11 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=27.0
Q ss_pred CCCchhHhhhhCCCc---eEEEeecCCCCCCCeEEEeee
Q 037117 232 ISNLLDLKRRLGVGR---RCFGYLHAAIPGEPLIFIEVA 267 (529)
Q Consensus 232 I~~W~DLkrRL~~dR---RCFaFFHPamP~EPLIFVeVA 267 (529)
-.+|+||...|..+- =||++|.. .++|||+--.
T Consensus 46 ~~~~~~f~~~Lp~~~~~~prY~vy~~---~~k~vfI~w~ 81 (124)
T 3q2b_A 46 STTLTELVQSIDKNNEIQCAYVVFDA---VSKIHFFMYA 81 (124)
T ss_dssp CSCHHHHHHHHHHCTTCSEEEEEEEC---SSCEEEEEEE
T ss_pred CCCHHHHHHHccccCCCCcEEEEEec---CCCEEEEEEC
Confidence 368999999997666 78999987 6899998654
No 16
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei}
Probab=22.68 E-value=23 Score=31.30 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=26.6
Q ss_pred CCchhHhhhhCCCceEEEeecCCCCC------CCeEEEee
Q 037117 233 SNLLDLKRRLGVGRRCFGYLHAAIPG------EPLIFIEV 266 (529)
Q Consensus 233 ~~W~DLkrRL~~dRRCFaFFHPamP~------EPLIFVeV 266 (529)
.+|+||..-|..+--||+++.-..+. .++|||--
T Consensus 58 ~~~~~~~~~L~~~~prY~~y~~~~~~~~g~~~~k~vfI~w 97 (148)
T 2xfa_A 58 NIIMRIKNNLKNTECRYIIADMPIPTPEGVLRDRIYFIFW 97 (148)
T ss_dssp HHHHHHHHTCBTTBCEEEEEEEEECCSSCCCEEEEEEEEE
T ss_pred CCHHHHHHhCCcCCcEEEEEecccccCCCCcccCEEEEEE
Confidence 46899999999999999999875542 47777654
No 17
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=22.43 E-value=2.7e+02 Score=25.13 Aligned_cols=30 Identities=27% Similarity=0.196 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 037117 86 ENRRRLLLVLAKEYDLNRTQVCELIKQYLG 115 (529)
Q Consensus 86 ~~r~~fl~~La~~f~~d~~~v~~a~~~y~~ 115 (529)
++|...+..|+++||++++.|-+-.+...+
T Consensus 128 e~RL~~l~~L~RKyg~~~eell~~~~~~~~ 157 (175)
T 4abx_A 128 EARLSALSKLKNKYGPTLEDVVEFGAQAAE 157 (175)
T ss_dssp HHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 378888999999999999888777666544
No 18
>2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A
Probab=22.11 E-value=84 Score=29.87 Aligned_cols=89 Identities=15% Similarity=0.111 Sum_probs=55.2
Q ss_pred CCchhHhhhhCCCceEEEeecCCCCC------CCeEEEeeecccchhhhHHhhhcCCCCCCCCCCceEEEEeecccccCc
Q 037117 233 SNLLDLKRRLGVGRRCFGYLHAAIPG------EPLIFIEVALLKNVAQTIQEVLWDDPPIPECEATCALFYSISSTQRGL 306 (529)
Q Consensus 233 ~~W~DLkrRL~~dRRCFaFFHPamP~------EPLIFVeVALt~~ia~sIq~iL~~~~~~~~~~a~tAiFYSISntQ~GL 306 (529)
..|..|-+.|..+++||++-.|-.-+ +|.. .-...++..+...+....+.. .-=|
T Consensus 105 ~~~~~l~~~L~~~~~v~~~d~~G~g~~~~~~~~~~~----~~~~~~a~~~~~~i~~~~~~~---------------p~~l 165 (319)
T 2hfk_A 105 HEFLRLSTSFQEERDFLAVPLPGYGTGTGTGTALLP----ADLDTALDAQARAILRAAGDA---------------PVVL 165 (319)
T ss_dssp TTTHHHHHTTTTTCCEEEECCTTCCBC---CBCCEE----SSHHHHHHHHHHHHHHHHTTS---------------CEEE
T ss_pred HHHHHHHHhcCCCCceEEecCCCCCCCcccccCCCC----CCHHHHHHHHHHHHHHhcCCC---------------CEEE
Confidence 46899999999999999998887654 3321 111222222222221100100 0127
Q ss_pred ccccchhhHHHHHHHHHHhh-CCCCCcccccCCcc
Q 037117 307 AGINLGKFLIKRVITLVKRD-MPHISTFATISPIP 340 (529)
Q Consensus 307 ~GIsfGNfLIKrVV~~L~~e-~P~lktF~TLSPIP 340 (529)
-|-|+|-.+--.++..+... -..++..+-+++.|
T Consensus 166 ~G~S~GG~vA~~~A~~l~~~~g~~v~~lvl~d~~~ 200 (319)
T 2hfk_A 166 LGHAGGALLAHELAFRLERAHGAPPAGIVLVDPYP 200 (319)
T ss_dssp EEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCC
T ss_pred EEECHHHHHHHHHHHHHHHhhCCCceEEEEeCCCC
Confidence 79999999999999888765 34577777777654
No 19
>3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp}
Probab=21.80 E-value=82 Score=27.28 Aligned_cols=86 Identities=10% Similarity=0.019 Sum_probs=59.3
Q ss_pred hHhhhhCCCceEEEeecCCCCCCCeEEEeeecccchhhhHHhhhcCCCCCCCCCCceEEEEeecccccCcccccchhhHH
Q 037117 237 DLKRRLGVGRRCFGYLHAAIPGEPLIFIEVALLKNVAQTIQEVLWDDPPIPECEATCALFYSISSTQRGLAGINLGKFLI 316 (529)
Q Consensus 237 DLkrRL~~dRRCFaFFHPamP~EPLIFVeVALt~~ia~sIq~iL~~~~~~~~~~a~tAiFYSISntQ~GL~GIsfGNfLI 316 (529)
.+.+.|...-+|+++-++.-|..+. -.....+...|+.+.+. +...+-.|-|.|+|-.+.
T Consensus 51 ~~~~~l~~~~~v~~~d~~~~~~~~~----~~~~~d~~~~~~~l~~~----------------~~~~~i~l~G~S~Gg~~a 110 (275)
T 3h04_A 51 QYIDILTEHYDLIQLSYRLLPEVSL----DCIIEDVYASFDAIQSQ----------------YSNCPIFTFGRSSGAYLS 110 (275)
T ss_dssp HHHHHHTTTEEEEEECCCCTTTSCH----HHHHHHHHHHHHHHHHT----------------TTTSCEEEEEETHHHHHH
T ss_pred HHHHHHHhCceEEeeccccCCcccc----chhHHHHHHHHHHHHhh----------------CCCCCEEEEEecHHHHHH
Confidence 6777787668899888886665432 11233444445555432 122456789999999998
Q ss_pred HHHHHHHHhhCCCCCcccccCCccch-HHHHH
Q 037117 317 KRVITLVKRDMPHISTFATISPIPGF-IQWLL 347 (529)
Q Consensus 317 KrVV~~L~~e~P~lktF~TLSPIPGF-~~WL~ 347 (529)
-.++.. +.++-.+.+||...+ ..|+.
T Consensus 111 ~~~a~~-----~~v~~~v~~~~~~~~~~~~~~ 137 (275)
T 3h04_A 111 LLIARD-----RDIDGVIDFYGYSRINTEPFK 137 (275)
T ss_dssp HHHHHH-----SCCSEEEEESCCSCSCSHHHH
T ss_pred HHHhcc-----CCccEEEeccccccccccccc
Confidence 888876 789999999999887 45554
No 20
>3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A
Probab=21.16 E-value=1.9e+02 Score=27.63 Aligned_cols=97 Identities=15% Similarity=0.116 Sum_probs=59.0
Q ss_pred ccCC----CCchhHhhhhCCCceEEEeecCCCCCCCeEEEeeecccchhhhHHhhhcCCCCCCCCCCceEEEEeeccccc
Q 037117 229 VHPI----SNLLDLKRRLGVGRRCFGYLHAAIPGEPLIFIEVALLKNVAQTIQEVLWDDPPIPECEATCALFYSISSTQR 304 (529)
Q Consensus 229 VH~I----~~W~DLkrRL~~dRRCFaFFHPamP~EPLIFVeVALt~~ia~sIq~iL~~~~~~~~~~a~tAiFYSISntQ~ 304 (529)
||.. ..|..|-++|..+++||++-.|...+.. .....+..-+..++..-....... ..
T Consensus 107 lhg~~~~~~~~~~l~~~L~~~~~v~~~d~~g~~~~~------~~~~~~~~~a~~~~~~i~~~~~~~-~~----------- 168 (329)
T 3tej_A 107 FHPASGFAWQFSVLSRYLDPQWSIIGIQSPRPNGPM------QTAANLDEVCEAHLATLLEQQPHG-PY----------- 168 (329)
T ss_dssp ECCTTSCCGGGGGGGGTSCTTCEEEEECCCTTTSHH------HHCSSHHHHHHHHHHHHHHHCSSS-CE-----------
T ss_pred EeCCcccchHHHHHHHhcCCCCeEEEeeCCCCCCCC------CCCCCHHHHHHHHHHHHHHhCCCC-CE-----------
Confidence 5665 4588999999999999999887653311 011112221111111000000000 11
Q ss_pred CcccccchhhHHHHHHHHHHhhCCCCCcccccCCccchH
Q 037117 305 GLAGINLGKFLIKRVITLVKRDMPHISTFATISPIPGFI 343 (529)
Q Consensus 305 GL~GIsfGNfLIKrVV~~L~~e~P~lktF~TLSPIPGF~ 343 (529)
=|-|-|+|-.+--.++..|++.--.++..+.+.+.|.+.
T Consensus 169 ~l~G~S~Gg~ia~~~a~~L~~~~~~v~~lvl~d~~~~~~ 207 (329)
T 3tej_A 169 YLLGYSLGGTLAQGIAARLRARGEQVAFLGLLDTWPPET 207 (329)
T ss_dssp EEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCTHH
T ss_pred EEEEEccCHHHHHHHHHHHHhcCCcccEEEEeCCCCCCc
Confidence 156999999999999999987655688888888877654
No 21
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=20.44 E-value=65 Score=28.71 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 037117 91 LLLVLAKEYDLNRTQVCELIKQYLGVL 117 (529)
Q Consensus 91 fl~~La~~f~~d~~~v~~a~~~y~~~~ 117 (529)
=+..||+++|+|++.+.+.+++|-+..
T Consensus 97 TleeLA~~~gid~~~L~~TV~~yN~~~ 123 (160)
T 2lfc_A 97 SLESAAEQAGIVVDELVQTVKNYQGYV 123 (160)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 377899999999999999999997543
No 22
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=20.06 E-value=19 Score=30.92 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=42.8
Q ss_pred hccCcccceeeecCCCCcHHHHHH-------HHhhccccCCC-CchhHhhhhCCCceEEEeecCCCCCCCeE
Q 037117 199 TWLSPAALELHQITWDDPASLLEK-------IVAYEAVHPIS-NLLDLKRRLGVGRRCFGYLHAAIPGEPLI 262 (529)
Q Consensus 199 sWF~~GfL~L~rItW~SPA~iLEK-------Ii~YEAVH~I~-~W~DLkrRL~~dRRCFaFFHPamP~EPLI 262 (529)
-||. |||--+. ....-|++ +|=||++|-+. ..+||..-+++||+|..--.-.-|+|=.+
T Consensus 20 F~F~-Gflp~~~----~r~~~l~~la~~~~TlVfyesp~Rl~~~l~~L~~~~g~~~~v~v~relTk~~E~~~ 86 (115)
T 3ffy_A 20 FCFE-GFLPQKK----GRMTKLKSLVDEHRTMVFYESPHRLLKTLTQFAEYFGPERQVSVSREISKIHEETV 86 (115)
T ss_dssp EEEE-ESCCSST----THHHHHHHTTTCCSEEEEEECTTTHHHHHHHHHHHHCTTCEEEEEEESSSSCEEEE
T ss_pred EEEE-eeCCCCc----cHHHHHHHHhCCCCeEEEEechHHHHHHHHHHHHhcCCCCEEEeeeccCCCceEEE
Confidence 4676 8886322 12223343 56799999995 77999888999999998888888887654
Done!