Query 037117
Match_columns 529
No_of_seqs 143 out of 250
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 14:49:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037117.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037117hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sfea2 c.55.7.1 (A:12-92) Ada 45.7 4 0.00029 30.8 1.7 30 299-329 17-46 (81)
2 d2fgea2 d.185.1.1 (A:798-993) 27.6 1.5E+02 0.011 24.2 9.5 70 43-116 97-166 (196)
3 d1qsma_ d.108.1.1 (A:) Histone 21.7 1.6E+02 0.011 22.3 7.9 106 206-326 3-113 (150)
4 d1m98a1 a.175.1.1 (A:2-175) Or 21.5 44 0.0032 29.4 4.6 36 70-105 131-166 (174)
5 d1mo2a_ c.69.1.22 (A:) Erythro 20.2 41 0.003 29.2 4.2 91 228-338 47-145 (255)
6 d1m98a1 a.175.1.1 (A:2-175) Or 19.0 46 0.0034 29.2 4.1 51 49-99 59-116 (174)
7 d2hs5a1 a.4.5.6 (A:25-93) Puta 18.0 44 0.0032 24.1 3.3 33 83-116 20-52 (69)
8 d1hqz1_ d.109.1.2 (1:) Cofilin 18.0 36 0.0026 28.0 3.0 24 233-256 48-71 (139)
9 d1y0pa3 d.168.1.1 (A:362-504) 17.5 39 0.0029 27.5 3.2 26 91-116 85-110 (143)
10 d1d4ca3 d.168.1.1 (A:360-505) 16.9 44 0.0032 27.2 3.4 28 90-117 85-112 (146)
No 1
>d1sfea2 c.55.7.1 (A:12-92) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=45.70 E-value=4 Score=30.78 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=25.2
Q ss_pred ecccccCcccccchhhHHHHHHHHHHhhCCC
Q 037117 299 ISSTQRGLAGINLGKFLIKRVITLVKRDMPH 329 (529)
Q Consensus 299 ISntQ~GL~GIsfGNfLIKrVV~~L~~e~P~ 329 (529)
|-.|+.||.+|.||+- -..++++|++++|+
T Consensus 17 vaat~~Glc~i~F~d~-~~~~~~~l~~~~p~ 46 (81)
T d1sfea2 17 VAESERGICAILLGDD-DATLISELQQMFPA 46 (81)
T ss_dssp EEECSSSEEEEEEESC-HHHHHHHHHHHSTT
T ss_pred EEEcCCcEEEEEEecC-hHHHHHHHHHhhcc
Confidence 4568999999999875 47788999999995
No 2
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=27.57 E-value=1.5e+02 Score=24.22 Aligned_cols=70 Identities=7% Similarity=-0.038 Sum_probs=51.4
Q ss_pred CCCChhhHHHHHHHHHHhhccCccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 037117 43 ANKPQRDFEHVRDSMHSAISMNKTEVIDTVLNDFSEGYFSLCYENRRRLLLVLAKEYDLNRTQVCELIKQYLGV 116 (529)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~ev~~~~a~~i~~~Y~~l~~~~r~~fl~~La~~f~~d~~~v~~a~~~y~~~ 116 (529)
.+.+++++++.+..+-.-+... .+.....+..+......++.+.+..|...+ ..+..++|.++++.|...
T Consensus 97 ~~~t~eeL~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~e~I---~~VT~edi~~vA~kyl~~ 166 (196)
T d2fgea2 97 LDVDQETLTKAIIGTIGDVDSY-QLPDAKGYSSLLRHLLGVTDEERQRKREEI---LTTSLKDFKDFAQAIDVV 166 (196)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHTTCCHHHHHHHHHHH---HTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHHHhCCCHHHHHHHHHHH---HhcCHHHHHHHHHHHhcc
Confidence 4578888988777666555433 333344666677777788999988887766 569999999999999753
No 3
>d1qsma_ d.108.1.1 (A:) Histone acetyltransferase HPA2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.72 E-value=1.6e+02 Score=22.30 Aligned_cols=106 Identities=11% Similarity=-0.053 Sum_probs=57.4
Q ss_pred ceeeecCCCCcHHHHHHHH----hhccccCCCCchhHhhhh-CCCceEEEeecCCCCCCCeEEEeeecccchhhhHHhhh
Q 037117 206 LELHQITWDDPASLLEKIV----AYEAVHPISNLLDLKRRL-GVGRRCFGYLHAAIPGEPLIFIEVALLKNVAQTIQEVL 280 (529)
Q Consensus 206 L~L~rItW~SPA~iLEKIi----~YEAVH~I~~W~DLkrRL-~~dRRCFaFFHPamP~EPLIFVeVALt~~ia~sIq~iL 280 (529)
+.+|.+|=++-..+++-.- -||.-.+-..+..+.+++ ++..+.+.++-.+-.+..+|..-+.-..
T Consensus 3 i~IR~~~~~D~e~~~~L~~~y~~fy~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivg~~~~~~~---------- 72 (150)
T d1qsma_ 3 ITVRFVTENDKEGWQRLWKSYQDFYEVSFPDDLDDFNFGRFLDPNIKMWAAVAVESSSEKIIGMINFFNH---------- 72 (150)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTSCEEEEEEEESSSCCEEEEEEEEEE----------
T ss_pred eEEEECCHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhCCCcccceeeeehhhcCcEEEEEEEeec----------
Confidence 4455565554444433211 223322223344555555 5677777777666665555543222110
Q ss_pred cCCCCCCCCCCceEEEEeecccccCcccccchhhHHHHHHHHHHhh
Q 037117 281 WDDPPIPECEATCALFYSISSTQRGLAGINLGKFLIKRVITLVKRD 326 (529)
Q Consensus 281 ~~~~~~~~~~a~tAiFYSISntQ~GL~GIsfGNfLIKrVV~~L~~e 326 (529)
.. ...........+|- +.++.+|-.+|..||..+++..++.
T Consensus 73 --~~--~~~~~~~~~l~~l~-v~~~~rg~GiG~~L~~~~~~~a~~~ 113 (150)
T d1qsma_ 73 --MT--TWDFKDKIYINDLY-VDENSRVKGAGGKLIQFVYDEADKL 113 (150)
T ss_dssp --CC--TTCSSCEEEEEEEE-ECGGGCSSSHHHHHHHHHHHHHHHT
T ss_pred --cc--cccccchheehhhh-hhhcccCccHHHHHHHHHHhhhccc
Confidence 00 11112233333333 6788899999999999999999864
No 4
>d1m98a1 a.175.1.1 (A:2-175) Orange carotenoid protein, N-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]}
Probab=21.51 E-value=44 Score=29.37 Aligned_cols=36 Identities=6% Similarity=-0.022 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHH
Q 037117 70 DTVLNDFSEGYFSLCYENRRRLLLVLAKEYDLNRTQ 105 (529)
Q Consensus 70 ~~~a~~i~~~Y~~l~~~~r~~fl~~La~~f~~d~~~ 105 (529)
+.-+.++++.-..|+-+++..||+..+.++|+|+.+
T Consensus 131 S~~a~~vl~~I~~Ldf~QQITvlR~~V~~MG~dp~~ 166 (174)
T d1m98a1 131 SANANAILVTIQGIDPGQQITVLRNCVVDMGFDTSK 166 (174)
T ss_dssp CHHHHHHHHHHHHSCHHHHHHHHHHHHHTCSCCCTT
T ss_pred CHHHHHHHHHHHcCChhhhHHHHHHHHHHcCCCCCC
Confidence 345668999999999999999999999999999864
No 5
>d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=20.18 E-value=41 Score=29.19 Aligned_cols=91 Identities=16% Similarity=0.091 Sum_probs=58.1
Q ss_pred cccCC---C---CchhHhhhhCCCceEEEeecCCC-CCCCeEEEeeecccchhhhH-HhhhcCCCCCCCCCCceEEEEee
Q 037117 228 AVHPI---S---NLLDLKRRLGVGRRCFGYLHAAI-PGEPLIFIEVALLKNVAQTI-QEVLWDDPPIPECEATCALFYSI 299 (529)
Q Consensus 228 AVH~I---~---~W~DLkrRL~~dRRCFaFFHPam-P~EPLIFVeVALt~~ia~sI-q~iL~~~~~~~~~~a~tAiFYSI 299 (529)
-||++ . ++..|=+.|+++|++|++-.|-. ++||+- .=.+.+++.+ +.|... .+ .. -.+
T Consensus 47 c~~~~~~gg~~~~y~~La~~L~~~~~V~al~~pG~~~~e~~~----~s~~~~a~~~~~~i~~~-~~---~~-P~~----- 112 (255)
T d1mo2a_ 47 CCAGTAAISGPHEFTRLAGALRGIAPVRAVPQPGYEEGEPLP----SSMAAVAAVQADAVIRT-QG---DK-PFV----- 112 (255)
T ss_dssp EECCCSSSCSGGGGHHHHHHHTTTCCEEEECCTTSSTTCCEE----SSHHHHHHHHHHHHHHT-TS---SS-CEE-----
T ss_pred EECCCCCCCCHHHHHHHHHhcCCCceEEEEeCCCcCCCCCCC----CCHHHHHHHHHHHHHHh-CC---CC-CEE-----
Confidence 57874 1 37789999999999999987765 456652 1122333332 223211 11 00 011
Q ss_pred cccccCcccccchhhHHHHHHHHHHhhCCCCCcccccCC
Q 037117 300 SSTQRGLAGINLGKFLIKRVITLVKRDMPHISTFATISP 338 (529)
Q Consensus 300 SntQ~GL~GIsfGNfLIKrVV~~L~~e~P~lktF~TLSP 338 (529)
|-|=|||-.+.-.+...|.+.-..+...+-+.+
T Consensus 113 ------L~GhS~Gg~vA~e~A~~l~~~g~~v~~lvlld~ 145 (255)
T d1mo2a_ 113 ------VAGHSAGALMAYALATELLDRGHPPRGVVLIDV 145 (255)
T ss_dssp ------EEECSTTHHHHHHHHHHHHHHTCCCSEEEEEEC
T ss_pred ------EEEeCCcHHHHHHHHHhhHhcCCCccEEEEECC
Confidence 679999999999999999887666666665554
No 6
>d1m98a1 a.175.1.1 (A:2-175) Orange carotenoid protein, N-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]}
Probab=18.96 E-value=46 Score=29.23 Aligned_cols=51 Identities=8% Similarity=0.127 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHhhccCccchHH---HHH----HHHHHHHhcCCHHHHHHHHHHHHHhc
Q 037117 49 DFEHVRDSMHSAISMNKTEVID---TVL----NDFSEGYFSLCYENRRRLLLVLAKEY 99 (529)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~ev~~---~~a----~~i~~~Y~~l~~~~r~~fl~~La~~f 99 (529)
.++....++++.-.....|... +++ ..|+..|..++...|+.|+-.|++-+
T Consensus 59 ~~~~ae~ll~qik~ms~~EQlq~MrDL~~~~dt~isR~Y~~ls~n~KL~fWY~Lae~M 116 (174)
T d1m98a1 59 NMQFAENTLQEIRQMTPLQQTQAMCDLANRTDTPICRTYASWSPNIKLGFWYELGRFM 116 (174)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHTCCCHHHHHHHTBCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCHHHHHHhccCCcchHHHHHHHHHHh
Confidence 3344444555554444444332 233 26799999999999999999999875
No 7
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=18.04 E-value=44 Score=24.14 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhh
Q 037117 83 LCYENRRRLLLVLAKEYDLNRTQVCELIKQYLGV 116 (529)
Q Consensus 83 l~~~~r~~fl~~La~~f~~d~~~v~~a~~~y~~~ 116 (529)
+.+.+|.. -+.||++||+.+.-|++|+....+.
T Consensus 20 ~~~G~~l~-~~~La~~~~vSr~tvr~Al~~L~~~ 52 (69)
T d2hs5a1 20 FRPGARLS-EPDICAALDVSRNTVREAFQILIED 52 (69)
T ss_dssp SCTTCEEC-HHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCcCccC-HHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 34444554 4679999999999999999988653
No 8
>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding protein abp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.00 E-value=36 Score=28.00 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=20.6
Q ss_pred CCchhHhhhhCCCceEEEeecCCC
Q 037117 233 SNLLDLKRRLGVGRRCFGYLHAAI 256 (529)
Q Consensus 233 ~~W~DLkrRL~~dRRCFaFFHPam 256 (529)
.+++||+.-|..+..||||+=-..
T Consensus 48 ~~~~e~~~~l~~~~~~Y~~~r~~~ 71 (139)
T d1hqz1_ 48 SSFHDFLQLFDETKVQYGLARVSP 71 (139)
T ss_dssp SCHHHHHTCCCTTSCEEEEEEECC
T ss_pred CCHHHHHHhcCCCceEEEEEEEec
Confidence 689999999999999999985433
No 9
>d1y0pa3 d.168.1.1 (A:362-504) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}
Probab=17.48 E-value=39 Score=27.54 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhh
Q 037117 91 LLLVLAKEYDLNRTQVCELIKQYLGV 116 (529)
Q Consensus 91 fl~~La~~f~~d~~~v~~a~~~y~~~ 116 (529)
=+..||+++|+|++.+.+.++.|-+.
T Consensus 85 tleeLA~~~gid~~~L~~Tv~~yN~~ 110 (143)
T d1y0pa3 85 SLVKLGKMEGIDGKALTETVARYNSL 110 (143)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 47789999999999999999999654
No 10
>d1d4ca3 d.168.1.1 (A:360-505) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}
Probab=16.93 E-value=44 Score=27.17 Aligned_cols=28 Identities=21% Similarity=0.428 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhc
Q 037117 90 RLLLVLAKEYDLNRTQVCELIKQYLGVL 117 (529)
Q Consensus 90 ~fl~~La~~f~~d~~~v~~a~~~y~~~~ 117 (529)
.=+..||+++|+|++.+.+.++.|-+..
T Consensus 85 ~TleeLA~~~gid~~~L~~Tv~~yN~~~ 112 (146)
T d1d4ca3 85 KTIEELAKQIDVPAAELAKTVTAYNGFV 112 (146)
T ss_dssp SSHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3478899999999999999999996543
Done!