BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>037120
MEKYLVSRESVPENPKRCNSSNRWKRSVVELNGRFESKYRHDLSALLMQSYSQIGAFPHL
YHVDRVLCPTHEGIVNSQRSRAGDVAMIDHRRSFGKPGISALDFDCKGIYLVSATRSGCL
TVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNV
VSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD
RRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEV
CHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYN
SRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSP
SHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ
CTSDSMLEQ

High Scoring Gene Products

Symbol, full name Information P value
AT5G12920 protein from Arabidopsis thaliana 2.4e-127

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  037120
        (489 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2182330 - symbol:AT5G12920 "AT5G12920" species...  1122  2.4e-127  2
POMBASE|SPCC16C4.08c - symbol:skb15 "p21 activated protei...   119  0.00032   1


>TAIR|locus:2182330 [details] [associations]
            symbol:AT5G12920 "AT5G12920" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0080008 "Cul4-RING ubiquitin ligase complex"
            evidence=ISS] InterPro:IPR017986 InterPro:IPR015943 EMBL:CP002688
            Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0080008 IPI:IPI00852298
            RefSeq:NP_001154711.1 UniGene:At.50452 ProteinModelPortal:F4K108
            SMR:F4K108 EnsemblPlants:AT5G12920.2 GeneID:831132
            KEGG:ath:AT5G12920 OMA:DFESLYC Uniprot:F4K108
        Length = 572

 Score = 1122 (400.0 bits), Expect = 2.4e-127, Sum P(2) = 2.4e-127
 Identities = 229/450 (50%), Positives = 301/450 (66%)

Query:    59 HLYHVDRVL-CPTHEGIV-----NSQRSRAGDVAMID-HRRS-FGKPGISALDFDCKGIY 110
             H+  +  +  CPT  G+      N  RS      ++  H +  F    +   D   +GI+
Sbjct:   121 HMMQIQSLYQCPTMRGVAGLDFDNRVRSLINTFGLVSVHVQCYFIISDLCLRDSSHQGIF 180

Query:   111 LVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLP--QQLDAVRWNLANQ 168
             LVS TRSGCL VHDFESLY  C   L G G  ED+SKH++H   P  ++ D  RWN +NQ
Sbjct:   181 LVSVTRSGCLMVHDFESLY--CQSKL-GPGSAEDESKHVVHFSYPPGREFDVARWNPSNQ 237

Query:   169 DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLI 228
             +EVAC S + + V I+DI Y+S +P EVL+TR+ ++++G  + +GLSD+A ++   SR+ 
Sbjct:   238 NEVACTSRKHDQVLIFDISYMSPKPTEVLQTRQKLSIIGRKISRGLSDVAITSDEDSRIF 297

Query:   229 ASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGG 288
             + DT G+V++WDRR GV P +ELST  + ++ SIQ++ +NQ IF AGK G I++WDLRGG
Sbjct:   298 SPDTLGMVHVWDRRAGVSPCIELSTDRYDSIKSIQIYVDNQTIFGAGKEGIIHIWDLRGG 357

Query:   289 RTSAPFHNHKEVC-------------HLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSID 335
             R S+ F + K+V               LPL SL LA  L+KI +LKAQS+IV +EIHSID
Sbjct:   358 RNSSAFQSRKDVSLTRGELELAMAMSQLPLASLHLAPKLQKIASLKAQSEIVPKEIHSID 417

Query:   336 LDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTN 395
             ++PS  +QLAFHLDDGWSGVLD+Y S V+HVHCPPPAWL  SN+SAD L LRKPSWL T+
Sbjct:   418 VNPSSPHQLAFHLDDGWSGVLDIYKSEVTHVHCPPPAWLDGSNSSAD-LILRKPSWLPTS 476

Query:   396 SIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACV 455
             SIY VGS S+ GIH+LDF P S SP HVDY+ED +   +R K    N+FV LSE VT C 
Sbjct:   477 SIYVVGSMSEKGIHVLDFHPSSRSPCHVDYDEDTQRNEKRDKCNHRNKFVSLSETVTGCA 536

Query:   456 THPLNNTIVAGTKNSSLLVVSQKQQCTSDS 485
              HPLN  IVAGT+NSSLL+++Q   C+S S
Sbjct:   537 AHPLNGMIVAGTQNSSLLLIAQ-MHCSSSS 565

 Score = 149 (57.5 bits), Expect = 2.4e-127, Sum P(2) = 2.4e-127
 Identities = 25/48 (52%), Positives = 35/48 (72%)

Query:    24 WKRSVVELNGRFESKYRHDLSALLMQSYSQIGAFPHLYHVDRVLCPTH 71
             WKRS++E+NGR +S YRH+L + +  SYS+IG F H YH++   C TH
Sbjct:    74 WKRSLIEVNGRLDSAYRHELYSRVAHSYSEIGKFSHFYHLNENPCITH 121


>POMBASE|SPCC16C4.08c [details] [associations]
            symbol:skb15 "p21 activated protein kinase inhibitor
            Skb15" species:4896 "Schizosaccharomyces pombe" [GO:0004860
            "protein kinase inhibitor activity" evidence=IMP] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0030685 "nucleolar preribosome" evidence=IDA] [GO:0042254
            "ribosome biogenesis" evidence=IMP] [GO:0043234 "protein complex"
            evidence=NAS] [GO:0070507 "regulation of microtubule cytoskeleton
            organization" evidence=IGI] [GO:0071775 "regulation of cell cycle
            cytokinesis" evidence=IGI] InterPro:IPR017986 InterPro:IPR001680
            InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
            SMART:SM00320 PomBase:SPCC16C4.08c GO:GO:0043234 Gene3D:2.130.10.10
            SUPFAM:SSF50978 PROSITE:PS00678 GO:GO:0071775 InterPro:IPR019775
            EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0004860 GO:GO:0042254
            InterPro:IPR018391 SMART:SM00564 GO:GO:0070507 KO:K14830
            OrthoDB:EOG45F0ZR OMA:NDGFIKM EMBL:AY030407 PIR:T41098
            RefSeq:NP_587918.1 ProteinModelPortal:O74453 STRING:O74453
            EnsemblFungi:SPCC16C4.08c.1 GeneID:2538757 KEGG:spo:SPCC16C4.08c
            eggNOG:NOG328772 NextBio:20799941 GO:GO:0030685 Uniprot:O74453
        Length = 341

 Score = 119 (46.9 bits), Expect = 0.00032, P = 0.00032
 Identities = 51/202 (25%), Positives = 84/202 (41%)

Query:   174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTV----VGSDVQKG-LSDLAFSAVNTSRLI 228
             A T   V  IY     SDE +++    R+V +    V +D+    + D+ F+    + L+
Sbjct:    37 ALTALAVDGIYLASTSSDETIKIFDHTRNVQIADVSVPTDIANACIRDMCFTK---NHLL 93

Query:   229 ASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDL-RG 287
             A   +G +++W +   +L    L + SH  +  I +H   ++    G  G + LWDL RG
Sbjct:    94 ACHDNGQISMWSKGSWLLVHT-LKSSSHKGITGIAVHPSEKLALTVGGDGKLRLWDLVRG 152

Query:   288 -GRTSAPFHNHKE-VCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQ-- 343
              G    P     E +  L  +S  + S    I   K     +        L+  C YQ  
Sbjct:   153 KGGKVLPLSTIPESILFLNESSFVIMSR-RGIDAFKLDLTSLFSFSSKSQLNALCLYQSK 211

Query:   344 LAFHLDDGWSGVLDVYNSRVSH 365
             L    D+G   VLD  + ++ H
Sbjct:   212 LIVGRDNGTVLVLDTSDGKILH 233


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.132   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      489       489   0.00082  119 3  11 22  0.41    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  620 (66 KB)
  Total size of DFA:  308 KB (2158 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  41.46u 0.13s 41.59t   Elapsed:  00:00:02
  Total cpu time:  41.46u 0.13s 41.59t   Elapsed:  00:00:02
  Start:  Fri May 10 23:07:46 2013   End:  Fri May 10 23:07:48 2013

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