BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037120
(489 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 11/152 (7%)
Query: 227 LIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSI---QLHAENQIIFAAGKHGS-IYL 282
LI T G+++IWD R VL S G H + + Q + +N +I G + + +
Sbjct: 229 LILGTTRGIIDIWDIRFNVLIR-SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI 287
Query: 283 WDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEK-----IGTLKAQSKIVSQEIHSIDLD 337
W+ G F N E + L + LE+ I +L A S I + D
Sbjct: 288 WNFVKGHCQYAFINSDEQPSME-HFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTD 346
Query: 338 PSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCP 369
+ S + F L++ S + SR S V P
Sbjct: 347 EATSSIVMFSLNELSSSKAVISPSRFSDVFIP 378
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
Query: 227 LIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLR 286
LI+S + IW + G P + G T+ I + + + +A G+I LW+
Sbjct: 151 LISSSQDMQLKIWSVKDGSNPRTLI--GHRATVTDIAIIDRGRNVLSASLDGTIRLWECG 208
Query: 287 GGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAF 346
G T F N KE H + S+ L +GT + +I + + ++++ Y +A
Sbjct: 209 TGTTIHTF-NRKENPHDGVNSIALF-----VGTDRQLHEISTSKKNNLEFGTYGKYVIAG 262
Query: 347 HLDDGWSGVLDVYN 360
H+ SGV+ V+N
Sbjct: 263 HV----SGVITVHN 272
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 12/134 (8%)
Query: 227 LIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLR 286
LI+S + IW + G P + G T+ I + + + +A G+I LW+
Sbjct: 154 LISSSQDMQLKIWSVKDGSNPRTLI--GHRATVTDIAIIDRGRNVLSASLDGTIRLWECG 211
Query: 287 GGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAF 346
G T F N KE H + S+ L +GT + +I + + ++++ Y +A
Sbjct: 212 TGTTIHTF-NRKENPHDGVNSIALF-----VGTDRQLHEISTSKKNNLEFGTYGKYVIAG 265
Query: 347 HLDDGWSGVLDVYN 360
H+ SGV+ V+N
Sbjct: 266 HV----SGVITVHN 275
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 218 AFSAVNTSRLIASDTHGVVNIWD-RRVGVLPSLELS-TGSHGTLNSIQLHAENQ-IIFAA 274
A + + T ++ ++ G + IWD R+ G PS LS TG L+ + H Q ++
Sbjct: 196 AVTFLRTPEILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATG 255
Query: 275 GKHGSIYLWDLRGG 288
G+ G + +WD+R G
Sbjct: 256 GQDGMLSIWDVRQG 269
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 197 LKTRRSVTVVGSDVQKG----LSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELS 252
+ T + +++ GS+ G + L+ +++N + I+ V +WD R+ ++
Sbjct: 187 VTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI-TSRAVRTY 245
Query: 253 TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGG 288
G G +NS++ + Q G+ L+D+R G
Sbjct: 246 HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 214 LSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFA 273
+SDLA S N I+S + +WD R G + + G + S+ +N+ I +
Sbjct: 79 VSDLALSQENCF-AISSSWDKTLRLWDLRTGT--TYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 274 AGKHGSIYLWDLRG--GRTSAPFHNHKE 299
AG I LW++ G +SA NH +
Sbjct: 136 AGAEREIKLWNILGECKFSSAEKENHSD 163
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 239 WDRRVGV--LPSLELST---GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR 289
WD+ V V L + +L T G G LN++ + + + + GK G LWDL G+
Sbjct: 193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 239 WDRRVGV--LPSLELST---GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR 289
WD+ V V L + +L T G G LN++ + + + + GK G LWDL G+
Sbjct: 170 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 225
>pdb|2EQ5|A Chain A, Crystal Structure Of Hydantoin Racemase From Pyrococcus
Horikoshii Ot3
pdb|2EQ5|B Chain B, Crystal Structure Of Hydantoin Racemase From Pyrococcus
Horikoshii Ot3
pdb|2EQ5|C Chain C, Crystal Structure Of Hydantoin Racemase From Pyrococcus
Horikoshii Ot3
pdb|2EQ5|D Chain D, Crystal Structure Of Hydantoin Racemase From Pyrococcus
Horikoshii Ot3
Length = 228
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 56 AFPHLYHVDRVLCPTHEGIVNSQRSRAGDVAMIDHRRSFGKPGISALDFDC 106
AFP L V R + +GI N + R + +I + F + G+ A+ C
Sbjct: 33 AFPELKVVSRCIEDQPKGIYNEETEREAEPKIIRLAKEFEREGVDAIIISC 83
>pdb|1JQG|A Chain A, Crystal Structure Of The Carboxypeptidase A From
Helicoverpa Armigera
Length = 433
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 120 LTVHDFES--LYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171
L +H F S LY NG LP L+ HL+ + + Q +D V+W+ +N+D +
Sbjct: 303 LDIHSFGSMILYGYGNGVLPSNALQ----LHLIGVQMAQAIDRVKWS-SNKDYI 351
>pdb|1U7N|A Chain A, Crystal Structure Of The Fatty AcidPHOSPHOLIPID SYNTHESIS
Protein Plsx From Enterococcus Faecalis V583
pdb|1U7N|B Chain B, Crystal Structure Of The Fatty AcidPHOSPHOLIPID SYNTHESIS
Protein Plsx From Enterococcus Faecalis V583
Length = 336
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 191 DEPVEVLKTRRSVTVV--GSDVQKGLSDLAFSAVNTSRLIAS 230
DEPV+ ++ +++ + V V+ G +D FSA NT L+A+
Sbjct: 68 DEPVKAIRRKKTASXVLAAQAVKNGEADAIFSAGNTGALLAA 109
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLT 306
G + +N++ + +I +AGK G I LW+L + EV L +
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFS 246
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLT 306
G + +N++ + +I +AGK G I LW+L + EV L +
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLT 306
G + +N++ + +I +AGK G I LW+L + EV L +
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLT 306
G + +N++ + +I +AGK G I LW+L + EV L +
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLT 306
G + +N++ + +I +AGK G I LW+L + EV L +
Sbjct: 188 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 240
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLT 306
G + +N++ + +I +AGK G I LW+L + EV L +
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 191 DEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL- 249
D V + R + ++ G++ +A S + + A V +WD G L
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245
Query: 250 ----ELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLR 286
E TG ++ S+ + Q + + S+ LW+L+
Sbjct: 246 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 286
>pdb|3ILP|A Chain A, Structure Of Mcd1d With Bound Glycolipid Bbgl-2f From
Borrelia Burgdorferi
pdb|3ILQ|C Chain C, Structure Of Mcd1d With Bound Glycolipid Bbgl-2c From
Borrelia Burgdorferi
pdb|3RTQ|A Chain A, Structure Of The Mouse Cd1d-Hs44-Inkt Tcr Complex
Length = 285
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 13/74 (17%)
Query: 370 PPAWLSDSNNSAD---QL------HLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSP 420
P AWLS +SAD QL KP W+ ++ G G H DF P +
Sbjct: 189 PVAWLSSVPSSADGHRQLVCHVSGFYPKPVWV----MWMRGDQEQQGTHRGDFLPNADET 244
Query: 421 SHVDYNEDIESLSE 434
++ D+E+ E
Sbjct: 245 WYLQATLDVEAGEE 258
>pdb|2QYU|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 627
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 241 RRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWD 284
RR G L + LST HG LN L A NQ KH ++ L D
Sbjct: 448 RRFGELIDIILSTEEHGELNQQFLAATNQ------KHSTVKLID 485
>pdb|1Q7M|A Chain A, Cobalamin-Dependent Methionine Synthase (Meth) From
Thermotoga Maritima (Oxidized, Monoclinic)
pdb|1Q7M|B Chain B, Cobalamin-Dependent Methionine Synthase (Meth) From
Thermotoga Maritima (Oxidized, Monoclinic)
pdb|1Q7Q|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From T.
Maritima (Oxidized, Orthorhombic)
pdb|1Q7Q|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From T.
Maritima (Oxidized, Orthorhombic)
pdb|1Q7Z|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex)
pdb|1Q7Z|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex)
pdb|1Q8J|A Chain A, Cobalamin-dependent Methionine Synthase (1-566) From
Thermotoga Maritima (cd2+, Hcy, Methyltetrahydrofolate
Complex)
pdb|1Q8J|B Chain B, Cobalamin-dependent Methionine Synthase (1-566) From
Thermotoga Maritima (cd2+, Hcy, Methyltetrahydrofolate
Complex)
pdb|3BOF|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+ And Homocysteine
pdb|3BOF|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+ And Homocysteine
pdb|3BOL|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+
pdb|3BOL|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+
Length = 566
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 183 IYDIGYI----SDEPVEVLKTRRSVTVVGSDVQKGLSDLAF-----SAVNTSRLIASDTH 233
I+D G + +PVEVLKT ++ G + GLS+L+F S NT+ L+ +
Sbjct: 471 IFDPGVLPLGAEGKPVEVLKTIEFISSKGFNTTVGLSNLSFGLPDRSYYNTAFLVLGISK 530
Query: 234 GV 235
G+
Sbjct: 531 GL 532
>pdb|3SY2|A Chain A, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|B Chain B, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 621
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 241 RRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWD 284
RR G L + LST HG LN L A NQ KH ++ L D
Sbjct: 442 RRFGELIDIILSTEEHGELNQQFLAATNQ------KHSTVKLID 479
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 227 LIASDTHGVVNIWDRRVG-----VLPSLELSTGSHGTLNSIQLHAENQIIFAA-GKHGSI 280
L ASD H V +WD G ++ + + TG + + H ++ +F + +
Sbjct: 196 LSASDDHTVC-LWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 281 YLWDLRGGRTSAPFH 295
+WD R TS P H
Sbjct: 255 MIWDTRSNTTSKPSH 269
>pdb|2QZA|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
pdb|2QZA|B Chain B, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 618
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 241 RRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWD 284
RR G L + LST HG LN L A NQ KH ++ L D
Sbjct: 439 RRFGELIDIILSTEEHGELNQQFLAATNQ------KHSTVKLID 476
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 227 LIASDTHGVVNIWDRRVG-----VLPSLELSTGSHGTLNSIQLHAENQIIFAA-GKHGSI 280
L ASD H V +WD G ++ + + TG + + H ++ +F + +
Sbjct: 196 LSASDDHTVC-LWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 281 YLWDLRGGRTSAPFH 295
+WD R TS P H
Sbjct: 255 XIWDTRSNTTSKPSH 269
>pdb|1Q85|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex, Se-Met)
pdb|1Q85|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex, Se-Met)
pdb|1Q8A|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+:l-Hcy Complex, Se-Met)
pdb|1Q8A|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+:l-Hcy Complex, Se-Met)
Length = 566
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 183 IYDIGYI----SDEPVEVLKTRRSVTVVGSDVQKGLSDLAF-----SAVNTSRLIASDTH 233
I+D G + +PVEVLKT ++ G + GLS+L+F S NT+ L+ +
Sbjct: 471 IFDPGVLPLGAEGKPVEVLKTIEFISSKGFNTTVGLSNLSFGLPDRSYYNTAFLVLGISK 530
Query: 234 GV 235
G+
Sbjct: 531 GL 532
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/46 (21%), Positives = 25/46 (54%)
Query: 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKE 299
G HG ++ ++ + N+++ +A G++ +W G + F+ H +
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ 290
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 222 VNTSRLIASDTHGVVNIWD-----RRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAA-G 275
+N L ASD H + +WD + V+ + + TG + + H ++ +F +
Sbjct: 193 LNGYLLSASDDHTIC-LWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA 251
Query: 276 KHGSIYLWDLRGGRTSAPFH 295
+ +WD R TS P H
Sbjct: 252 DDQKLMIWDTRNNNTSKPSH 271
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 222 VNTSRLIASDTHGVVNIWD-----RRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAA-G 275
+N L ASD H + +WD + V+ + + TG + + H ++ +F +
Sbjct: 195 LNGYLLSASDDHTIC-LWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA 253
Query: 276 KHGSIYLWDLRGGRTSAPFH 295
+ +WD R TS P H
Sbjct: 254 DDQKLMIWDTRNNNTSKPSH 273
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 222 VNTSRLIASDTHGVVNIWD-----RRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAA-G 275
+N L ASD H + +WD + V+ + + TG + + H ++ +F +
Sbjct: 197 LNGYLLSASDDHTIC-LWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA 255
Query: 276 KHGSIYLWDLRGGRTSAPFH 295
+ +WD R TS P H
Sbjct: 256 DDQKLMIWDTRNNNTSKPSH 275
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 227 LIASDTHGVVNIWDRRVG-VLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDL 285
L++ + V IWD + G L +L+ + +Q + + + G++ LWDL
Sbjct: 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL 389
Query: 286 RGG 288
+ G
Sbjct: 390 KTG 392
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,396,964
Number of Sequences: 62578
Number of extensions: 580960
Number of successful extensions: 1485
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1458
Number of HSP's gapped (non-prelim): 61
length of query: 489
length of database: 14,973,337
effective HSP length: 103
effective length of query: 386
effective length of database: 8,527,803
effective search space: 3291731958
effective search space used: 3291731958
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)