Query 037120
Match_columns 489
No_of_seqs 534 out of 3480
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 08:51:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037120.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037120hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 8.1E-48 1.8E-52 336.9 25.3 306 91-476 110-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.4E-41 3.1E-46 301.6 22.4 284 95-476 174-458 (459)
3 KOG0286 G-protein beta subunit 100.0 7.5E-38 1.6E-42 265.5 27.3 293 91-476 50-343 (343)
4 KOG0265 U5 snRNP-specific prot 100.0 1.7E-35 3.7E-40 252.1 25.4 289 92-474 43-334 (338)
5 KOG0271 Notchless-like WD40 re 100.0 1.8E-35 3.8E-40 259.6 21.0 270 148-483 111-444 (480)
6 KOG0263 Transcription initiati 100.0 2.3E-35 5E-40 281.9 23.1 261 91-479 373-650 (707)
7 KOG0284 Polyadenylation factor 100.0 8.1E-36 1.8E-40 263.9 17.8 281 94-480 94-382 (464)
8 KOG0285 Pleiotropic regulator 100.0 3.8E-34 8.1E-39 249.3 25.7 298 93-484 148-445 (460)
9 KOG0279 G protein beta subunit 100.0 1E-33 2.3E-38 239.0 25.5 252 92-477 59-312 (315)
10 KOG0272 U4/U6 small nuclear ri 100.0 1.9E-35 4E-40 262.8 15.1 237 91-412 212-458 (459)
11 KOG0266 WD40 repeat-containing 100.0 3E-33 6.6E-38 274.4 29.8 285 96-479 159-455 (456)
12 KOG0282 mRNA splicing factor [ 100.0 1.5E-34 3.2E-39 261.3 18.0 290 91-476 209-503 (503)
13 KOG0293 WD40 repeat-containing 100.0 3.8E-34 8.3E-39 253.5 20.2 288 92-480 220-515 (519)
14 KOG0645 WD40 repeat protein [G 100.0 5.8E-32 1.3E-36 227.5 28.2 292 92-478 10-311 (312)
15 KOG0275 Conserved WD40 repeat- 100.0 5.9E-34 1.3E-38 245.0 15.4 380 4-476 125-507 (508)
16 KOG0279 G protein beta subunit 100.0 1E-31 2.2E-36 227.0 25.0 254 91-483 10-267 (315)
17 KOG0316 Conserved WD40 repeat- 100.0 5.1E-32 1.1E-36 223.2 22.3 277 92-476 13-297 (307)
18 KOG0315 G-protein beta subunit 100.0 1.4E-31 3E-36 222.5 24.5 269 108-457 10-309 (311)
19 KOG0264 Nucleosome remodeling 100.0 4.2E-32 9.2E-37 244.2 22.1 277 94-478 122-404 (422)
20 KOG0319 WD40-repeat-containing 100.0 4.2E-32 9.1E-37 257.1 22.2 268 92-488 361-629 (775)
21 KOG0295 WD40 repeat-containing 100.0 2.2E-31 4.8E-36 232.7 23.5 301 92-477 104-405 (406)
22 KOG0273 Beta-transducin family 100.0 5.9E-31 1.3E-35 237.2 24.3 306 94-479 176-483 (524)
23 KOG0273 Beta-transducin family 100.0 1.7E-30 3.8E-35 234.2 27.2 282 95-478 234-523 (524)
24 KOG0276 Vesicle coat complex C 100.0 3.3E-31 7.2E-36 246.4 23.1 249 92-479 9-258 (794)
25 KOG0318 WD40 repeat stress pro 100.0 8.1E-30 1.8E-34 232.8 31.6 323 94-484 188-566 (603)
26 KOG0281 Beta-TrCP (transducin 100.0 6.2E-32 1.3E-36 234.6 16.1 235 92-478 193-428 (499)
27 KOG0286 G-protein beta subunit 100.0 1.2E-30 2.6E-35 221.8 23.0 236 99-412 100-343 (343)
28 KOG0263 Transcription initiati 100.0 3.3E-31 7.1E-36 253.6 21.3 183 92-312 447-629 (707)
29 KOG0318 WD40 repeat stress pro 100.0 1.6E-29 3.4E-34 230.9 29.9 350 92-481 55-520 (603)
30 KOG0296 Angio-associated migra 100.0 7.7E-30 1.7E-34 223.2 25.3 312 91-477 59-397 (399)
31 KOG0277 Peroxisomal targeting 100.0 1.6E-30 3.6E-35 216.8 19.6 246 95-477 59-308 (311)
32 KOG0291 WD40-repeat-containing 100.0 2.8E-29 6.1E-34 238.4 30.4 286 92-416 303-614 (893)
33 KOG0291 WD40-repeat-containing 100.0 2.9E-29 6.4E-34 238.2 27.8 283 92-479 261-551 (893)
34 cd00200 WD40 WD40 domain, foun 100.0 1.1E-28 2.5E-33 229.2 31.3 285 92-476 5-289 (289)
35 KOG0772 Uncharacterized conser 100.0 2.4E-30 5.2E-35 235.6 18.9 285 92-487 163-496 (641)
36 KOG0292 Vesicle coat complex C 100.0 9.9E-30 2.2E-34 245.1 22.8 300 92-474 5-318 (1202)
37 PLN00181 protein SPA1-RELATED; 100.0 2E-28 4.4E-33 258.1 34.4 308 93-476 480-791 (793)
38 KOG0281 Beta-TrCP (transducin 100.0 4.4E-30 9.6E-35 223.1 17.2 247 92-480 233-479 (499)
39 KOG0319 WD40-repeat-containing 100.0 3.5E-29 7.7E-34 237.4 24.7 309 95-480 104-579 (775)
40 KOG0640 mRNA cleavage stimulat 100.0 3.6E-29 7.8E-34 214.4 21.8 299 92-478 108-426 (430)
41 KOG0973 Histone transcription 100.0 9.7E-29 2.1E-33 244.6 27.4 336 98-488 15-365 (942)
42 KOG0276 Vesicle coat complex C 100.0 5.2E-29 1.1E-33 231.8 22.3 244 92-475 51-296 (794)
43 KOG0284 Polyadenylation factor 100.0 1E-29 2.2E-34 225.4 15.2 187 92-317 134-321 (464)
44 KOG1446 Histone H3 (Lys4) meth 100.0 3E-27 6.5E-32 203.9 29.0 292 92-479 10-304 (311)
45 KOG0643 Translation initiation 100.0 9.8E-28 2.1E-32 201.6 24.1 295 92-479 6-318 (327)
46 KOG0295 WD40 repeat-containing 100.0 7.2E-29 1.6E-33 217.0 17.3 262 149-480 105-366 (406)
47 KOG0283 WD40 repeat-containing 100.0 8E-28 1.7E-32 232.4 23.5 265 94-414 265-576 (712)
48 KOG0306 WD40-repeat-containing 100.0 3.1E-27 6.7E-32 224.5 26.9 221 206-479 368-623 (888)
49 KOG0278 Serine/threonine kinas 100.0 2.1E-28 4.5E-33 203.7 15.1 283 92-477 10-296 (334)
50 KOG0310 Conserved WD40 repeat- 100.0 2.4E-27 5.3E-32 215.1 22.9 242 92-475 64-306 (487)
51 KOG0313 Microtubule binding pr 100.0 7.9E-27 1.7E-31 205.4 24.5 285 99-478 108-418 (423)
52 KOG0288 WD40 repeat protein Ti 100.0 6.3E-28 1.4E-32 214.4 15.5 287 92-475 171-458 (459)
53 PTZ00421 coronin; Provisional 100.0 6.5E-26 1.4E-30 221.7 30.4 204 98-317 22-226 (493)
54 KOG0315 G-protein beta subunit 100.0 1.4E-26 3E-31 192.8 21.7 263 168-479 10-289 (311)
55 KOG0305 Anaphase promoting com 100.0 1E-26 2.3E-31 219.1 23.7 239 96-476 217-459 (484)
56 KOG0645 WD40 repeat protein [G 100.0 1.1E-25 2.4E-30 189.8 26.5 247 149-478 11-261 (312)
57 PTZ00420 coronin; Provisional 100.0 1.3E-25 2.8E-30 220.5 29.8 266 114-461 50-319 (568)
58 KOG0641 WD40 repeat protein [G 99.9 2.3E-25 4.9E-30 183.0 24.8 253 93-477 86-348 (350)
59 KOG0266 WD40 repeat-containing 99.9 6.4E-26 1.4E-30 222.7 25.1 177 92-300 199-378 (456)
60 KOG0285 Pleiotropic regulator 99.9 3.4E-26 7.3E-31 199.8 20.0 237 158-479 154-390 (460)
61 KOG4283 Transcription-coupled 99.9 3.6E-25 7.7E-30 188.8 23.9 316 94-477 41-364 (397)
62 KOG0277 Peroxisomal targeting 99.9 1.3E-25 2.8E-30 187.6 19.7 247 100-481 12-268 (311)
63 KOG1407 WD40 repeat protein [F 99.9 4.1E-25 8.9E-30 185.4 22.2 278 92-469 16-293 (313)
64 KOG0274 Cdc4 and related F-box 99.9 2.2E-25 4.8E-30 218.2 23.6 240 92-482 245-486 (537)
65 KOG0265 U5 snRNP-specific prot 99.9 3.6E-25 7.8E-30 189.3 21.1 261 144-482 39-300 (338)
66 KOG0306 WD40-repeat-containing 99.9 4.4E-25 9.4E-30 210.0 22.4 289 92-481 369-667 (888)
67 KOG0282 mRNA splicing factor [ 99.9 8.2E-26 1.8E-30 204.9 15.5 251 148-479 210-463 (503)
68 KOG0292 Vesicle coat complex C 99.9 2.6E-25 5.5E-30 214.9 19.5 260 158-479 12-281 (1202)
69 KOG2096 WD40 repeat protein [G 99.9 1.3E-23 2.9E-28 181.1 27.7 312 91-476 81-400 (420)
70 PLN00181 protein SPA1-RELATED; 99.9 2.1E-24 4.6E-29 227.7 27.2 280 117-478 457-738 (793)
71 KOG0308 Conserved WD40 repeat- 99.9 2.9E-25 6.2E-30 208.1 17.3 242 101-474 29-281 (735)
72 KOG0302 Ribosome Assembly prot 99.9 1.5E-24 3.3E-29 190.9 19.7 203 92-312 147-357 (440)
73 KOG1332 Vesicle coat complex C 99.9 1.7E-24 3.7E-29 180.0 18.8 257 95-477 10-285 (299)
74 KOG0316 Conserved WD40 repeat- 99.9 6.6E-24 1.4E-28 175.5 21.8 239 158-483 20-262 (307)
75 KOG1408 WD40 repeat protein [F 99.9 1.3E-23 2.7E-28 198.9 26.2 329 99-480 327-715 (1080)
76 KOG0289 mRNA splicing factor [ 99.9 1.3E-23 2.9E-28 188.1 23.8 249 94-481 217-465 (506)
77 KOG0294 WD40 repeat-containing 99.9 4.2E-23 9.2E-28 177.9 24.8 278 110-480 3-283 (362)
78 KOG0647 mRNA export protein (c 99.9 6.3E-23 1.4E-27 175.8 24.8 281 94-466 25-311 (347)
79 PTZ00421 coronin; Provisional 99.9 7.9E-23 1.7E-27 200.1 29.2 173 92-290 71-249 (493)
80 KOG0321 WD40 repeat-containing 99.9 1.1E-23 2.3E-28 197.2 21.8 294 102-477 55-390 (720)
81 KOG0299 U3 snoRNP-associated p 99.9 1.8E-23 3.9E-28 188.8 22.4 271 92-480 138-412 (479)
82 KOG0268 Sof1-like rRNA process 99.9 2.8E-24 6.1E-29 188.2 16.6 281 92-477 62-344 (433)
83 KOG0283 WD40 repeat-containing 99.9 1.2E-23 2.6E-28 203.7 21.8 251 150-478 265-576 (712)
84 KOG0310 Conserved WD40 repeat- 99.9 2.4E-23 5.2E-28 189.4 21.7 242 93-476 23-266 (487)
85 KOG0274 Cdc4 and related F-box 99.9 2.2E-23 4.8E-28 204.2 23.1 237 95-481 207-444 (537)
86 KOG0641 WD40 repeat protein [G 99.9 3.5E-22 7.6E-27 164.3 26.0 262 96-476 32-301 (350)
87 KOG0301 Phospholipase A2-activ 99.9 5.6E-23 1.2E-27 194.2 22.9 285 92-486 10-296 (745)
88 cd00200 WD40 WD40 domain, foun 99.9 4.4E-22 9.6E-27 184.7 28.8 245 149-479 6-250 (289)
89 KOG0269 WD40 repeat-containing 99.9 7.9E-24 1.7E-28 202.3 16.4 183 99-314 90-275 (839)
90 KOG0300 WD40 repeat-containing 99.9 7.2E-23 1.6E-27 176.4 20.2 302 91-477 143-475 (481)
91 KOG1036 Mitotic spindle checkp 99.9 6.3E-22 1.4E-26 170.4 25.3 276 96-468 13-294 (323)
92 KOG0267 Microtubule severing p 99.9 1.6E-24 3.4E-29 205.5 10.1 239 92-472 24-262 (825)
93 KOG0296 Angio-associated migra 99.9 1.5E-22 3.2E-27 177.8 21.0 263 92-414 102-398 (399)
94 KOG0639 Transducin-like enhanc 99.9 5.2E-23 1.1E-27 187.4 18.3 285 95-476 418-702 (705)
95 KOG0646 WD40 repeat protein [G 99.9 2.4E-22 5.1E-27 181.9 21.8 266 97-480 82-352 (476)
96 KOG0640 mRNA cleavage stimulat 99.9 4.7E-23 1E-27 177.1 16.2 177 92-297 168-346 (430)
97 KOG0299 U3 snoRNP-associated p 99.9 2.6E-22 5.7E-27 181.3 21.5 166 94-295 200-365 (479)
98 PTZ00420 coronin; Provisional 99.9 2.6E-21 5.6E-26 190.3 29.9 171 92-288 70-250 (568)
99 KOG0289 mRNA splicing factor [ 99.9 1.2E-21 2.6E-26 175.7 24.8 249 92-477 257-505 (506)
100 KOG1273 WD40 repeat protein [G 99.9 3.2E-22 7E-27 172.3 20.4 292 99-481 26-325 (405)
101 KOG0313 Microtubule binding pr 99.9 2.3E-22 5.1E-27 177.3 19.6 195 93-311 190-398 (423)
102 KOG0275 Conserved WD40 repeat- 99.9 2.3E-23 5E-28 180.0 12.5 207 158-479 216-424 (508)
103 KOG1332 Vesicle coat complex C 99.9 1.4E-22 3.1E-27 168.6 16.0 216 158-480 14-243 (299)
104 KOG1407 WD40 repeat protein [F 99.9 3E-22 6.5E-27 168.3 17.7 243 148-475 16-258 (313)
105 KOG0647 mRNA export protein (c 99.9 3.4E-22 7.4E-27 171.3 18.4 247 158-480 30-283 (347)
106 KOG2445 Nuclear pore complex c 99.9 1E-20 2.2E-25 162.8 26.2 275 97-475 14-315 (361)
107 KOG0293 WD40 repeat-containing 99.9 1.2E-21 2.6E-26 174.6 20.5 245 149-480 221-472 (519)
108 KOG1274 WD40 repeat protein [G 99.9 6.8E-21 1.5E-25 185.7 27.5 282 93-473 10-295 (933)
109 KOG0643 Translation initiation 99.9 1.7E-21 3.7E-26 164.3 19.7 197 91-317 47-246 (327)
110 KOG0278 Serine/threonine kinas 99.9 9.8E-23 2.1E-27 170.0 12.1 237 91-416 54-299 (334)
111 KOG0264 Nucleosome remodeling 99.9 8.7E-22 1.9E-26 177.9 18.3 219 150-480 122-349 (422)
112 KOG0269 WD40 repeat-containing 99.9 5.4E-22 1.2E-26 189.9 17.8 262 97-488 40-306 (839)
113 KOG0973 Histone transcription 99.9 1.4E-21 3E-26 194.3 20.6 267 148-478 8-312 (942)
114 KOG0321 WD40 repeat-containing 99.9 1.9E-21 4.2E-26 182.3 20.0 260 92-416 96-393 (720)
115 KOG0308 Conserved WD40 repeat- 99.9 6.3E-22 1.4E-26 185.9 16.3 194 93-313 70-266 (735)
116 KOG2048 WD40 repeat protein [G 99.9 1.6E-20 3.4E-25 177.5 25.4 252 97-480 26-277 (691)
117 KOG0270 WD40 repeat-containing 99.9 3.7E-21 8E-26 173.2 19.4 248 108-480 192-451 (463)
118 KOG1009 Chromatin assembly com 99.9 1.1E-20 2.4E-25 168.3 21.8 339 95-483 12-377 (434)
119 KOG4328 WD40 protein [Function 99.9 1.7E-20 3.8E-25 169.4 22.7 305 93-480 183-497 (498)
120 KOG2106 Uncharacterized conser 99.9 8.3E-20 1.8E-24 166.9 26.0 305 94-477 152-476 (626)
121 KOG2055 WD40 repeat protein [G 99.9 4.4E-20 9.6E-25 167.0 23.8 299 93-477 210-511 (514)
122 KOG1446 Histone H3 (Lys4) meth 99.9 6.5E-20 1.4E-24 158.8 23.8 241 158-478 17-262 (311)
123 KOG0267 Microtubule severing p 99.9 1.8E-22 3.9E-27 191.6 8.7 190 92-319 66-255 (825)
124 KOG0650 WD40 repeat nucleolar 99.9 1.6E-20 3.5E-25 174.8 20.9 304 92-476 396-733 (733)
125 KOG2919 Guanine nucleotide-bin 99.9 3.7E-20 8E-25 160.3 20.6 292 99-470 52-362 (406)
126 KOG1539 WD repeat protein [Gen 99.9 8.4E-20 1.8E-24 176.3 25.1 333 67-479 167-649 (910)
127 KOG0294 WD40 repeat-containing 99.9 5.6E-20 1.2E-24 158.7 21.3 167 92-295 39-206 (362)
128 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1E-18 2.2E-23 164.2 31.0 280 108-482 1-283 (300)
129 KOG2106 Uncharacterized conser 99.9 4.7E-19 1E-23 162.0 26.9 317 97-476 247-624 (626)
130 KOG0268 Sof1-like rRNA process 99.9 6.2E-21 1.3E-25 167.4 13.1 238 202-484 57-308 (433)
131 KOG0307 Vesicle coat complex C 99.9 1.1E-20 2.4E-25 188.7 16.0 293 101-481 11-330 (1049)
132 KOG1063 RNA polymerase II elon 99.8 1.1E-19 2.5E-24 172.0 21.2 342 92-480 187-650 (764)
133 KOG1539 WD repeat protein [Gen 99.8 8.9E-19 1.9E-23 169.3 27.2 182 99-317 162-350 (910)
134 KOG1445 Tumor-specific antigen 99.8 9.7E-20 2.1E-24 170.7 19.3 171 93-290 76-252 (1012)
135 KOG1007 WD repeat protein TSSC 99.8 5.8E-19 1.3E-23 150.6 22.0 290 90-483 57-366 (370)
136 KOG1334 WD40 repeat protein [G 99.8 7.7E-20 1.7E-24 166.5 16.9 308 92-481 138-469 (559)
137 KOG0305 Anaphase promoting com 99.8 3.7E-19 8E-24 168.3 21.5 234 100-477 181-418 (484)
138 KOG0772 Uncharacterized conser 99.8 7.2E-20 1.6E-24 167.7 16.1 254 147-479 162-446 (641)
139 KOG1408 WD40 repeat protein [F 99.8 9.2E-20 2E-24 173.0 17.2 245 92-416 455-715 (1080)
140 KOG1036 Mitotic spindle checkp 99.8 6.7E-19 1.5E-23 151.8 20.7 241 158-479 16-263 (323)
141 KOG4227 WD40 repeat protein [G 99.8 7.6E-19 1.6E-23 155.8 21.5 328 92-481 52-390 (609)
142 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 5.2E-18 1.1E-22 159.3 28.6 267 97-458 31-300 (300)
143 KOG0303 Actin-binding protein 99.8 7.4E-19 1.6E-23 156.1 20.2 153 148-315 77-229 (472)
144 KOG0300 WD40 repeat-containing 99.8 3.9E-19 8.5E-24 153.5 17.6 264 92-416 186-478 (481)
145 KOG0288 WD40 repeat protein Ti 99.8 1.5E-19 3.3E-24 161.3 14.9 244 92-411 215-458 (459)
146 KOG0302 Ribosome Assembly prot 99.8 1.7E-19 3.6E-24 159.3 14.4 170 92-287 207-379 (440)
147 KOG4283 Transcription-coupled 99.8 1.1E-18 2.4E-23 149.3 18.5 225 158-479 46-277 (397)
148 KOG2096 WD40 repeat protein [G 99.8 2.4E-18 5.3E-23 148.8 20.7 268 148-479 82-361 (420)
149 KOG0639 Transducin-like enhanc 99.8 1.4E-18 3E-23 158.9 18.5 185 97-319 466-650 (705)
150 KOG1188 WD40 repeat protein [G 99.8 4.2E-18 9.1E-23 148.8 20.7 173 109-314 41-223 (376)
151 KOG1063 RNA polymerase II elon 99.8 3.5E-17 7.6E-22 155.4 27.9 334 94-481 265-702 (764)
152 KOG0301 Phospholipase A2-activ 99.8 1.2E-18 2.7E-23 165.2 17.7 233 149-478 11-249 (745)
153 KOG2048 WD40 repeat protein [G 99.8 1.2E-16 2.6E-21 151.5 31.0 328 97-481 111-508 (691)
154 KOG0646 WD40 repeat protein [G 99.8 4.2E-18 9.1E-23 154.6 17.8 196 92-314 119-331 (476)
155 KOG0642 Cell-cycle nuclear pro 99.8 1.8E-18 4E-23 160.5 15.2 262 150-480 292-563 (577)
156 KOG1034 Transcriptional repres 99.8 4.6E-18 1E-22 147.8 16.1 263 95-478 88-383 (385)
157 KOG4328 WD40 protein [Function 99.8 4.2E-18 9.1E-23 154.2 16.1 211 158-480 189-401 (498)
158 KOG1310 WD40 repeat protein [G 99.8 8.4E-18 1.8E-22 155.4 18.4 174 92-286 46-231 (758)
159 KOG4378 Nuclear protein COP1 [ 99.8 3.1E-17 6.8E-22 149.9 20.4 270 117-478 11-280 (673)
160 KOG1274 WD40 repeat protein [G 99.8 8.1E-17 1.7E-21 157.7 24.1 251 150-479 11-263 (933)
161 KOG1445 Tumor-specific antigen 99.8 1.3E-17 2.8E-22 156.6 16.7 163 107-290 590-754 (1012)
162 KOG0649 WD40 repeat protein [G 99.8 1.2E-16 2.7E-21 133.3 20.2 183 99-297 13-197 (325)
163 KOG0307 Vesicle coat complex C 99.8 7.6E-18 1.6E-22 168.7 15.0 256 95-416 63-329 (1049)
164 KOG0642 Cell-cycle nuclear pro 99.8 1.6E-17 3.4E-22 154.4 15.5 202 92-311 290-540 (577)
165 KOG0270 WD40 repeat-containing 99.7 8.5E-17 1.8E-21 145.3 18.3 164 94-288 241-406 (463)
166 KOG0290 Conserved WD40 repeat- 99.7 9.2E-16 2E-20 131.4 22.8 294 98-468 46-356 (364)
167 KOG1517 Guanine nucleotide bin 99.7 8.2E-16 1.8E-20 152.6 25.7 312 99-482 1067-1385(1387)
168 KOG1587 Cytoplasmic dynein int 99.7 8.7E-16 1.9E-20 149.8 25.1 265 96-477 242-515 (555)
169 KOG0303 Actin-binding protein 99.7 2.1E-16 4.5E-21 140.7 18.2 171 92-290 77-253 (472)
170 KOG4378 Nuclear protein COP1 [ 99.7 1.5E-16 3.3E-21 145.5 17.7 188 92-314 117-305 (673)
171 KOG1538 Uncharacterized conser 99.7 5.2E-16 1.1E-20 146.8 21.7 275 98-475 14-290 (1081)
172 KOG1009 Chromatin assembly com 99.7 3.2E-16 7E-21 140.1 18.1 155 158-321 16-184 (434)
173 KOG1007 WD repeat protein TSSC 99.7 3.8E-16 8.3E-21 133.6 17.2 219 98-347 125-349 (370)
174 KOG0322 G-protein beta subunit 99.7 1E-16 2.2E-21 135.4 13.3 260 93-476 11-321 (323)
175 KOG4497 Uncharacterized conser 99.7 1.2E-15 2.7E-20 132.9 19.9 313 102-479 14-392 (447)
176 KOG2139 WD40 repeat protein [G 99.7 4.4E-15 9.5E-20 131.1 22.0 227 97-351 99-368 (445)
177 KOG1240 Protein kinase contain 99.7 8.3E-15 1.8E-19 147.7 26.6 342 92-475 1044-1430(1431)
178 KOG2055 WD40 repeat protein [G 99.7 1.8E-15 4E-20 137.4 18.7 185 97-318 258-451 (514)
179 KOG1273 WD40 repeat protein [G 99.7 1.6E-15 3.5E-20 131.4 17.4 199 214-479 26-227 (405)
180 KOG2919 Guanine nucleotide-bin 99.7 2.2E-15 4.8E-20 131.0 16.1 189 99-318 161-356 (406)
181 COG2319 FOG: WD40 repeat [Gene 99.7 4.8E-14 1E-18 138.7 27.6 249 92-480 61-316 (466)
182 KOG0771 Prolactin regulatory e 99.7 2.8E-15 6E-20 135.1 16.1 185 100-319 148-341 (398)
183 KOG0644 Uncharacterized conser 99.7 2.8E-16 6.2E-21 152.1 10.1 277 92-477 186-467 (1113)
184 PRK11028 6-phosphogluconolacto 99.7 2.3E-13 4.9E-18 129.5 30.0 285 111-478 5-304 (330)
185 KOG0650 WD40 repeat nucleolar 99.6 2.5E-14 5.3E-19 134.1 21.1 245 147-475 395-677 (733)
186 KOG1963 WD40 repeat protein [G 99.6 1E-13 2.3E-18 135.8 26.2 311 99-479 208-539 (792)
187 KOG2445 Nuclear pore complex c 99.6 7.7E-14 1.7E-18 120.7 21.9 125 158-293 16-151 (361)
188 KOG1188 WD40 repeat protein [G 99.6 2.4E-14 5.1E-19 125.6 18.2 195 170-481 42-245 (376)
189 KOG0644 Uncharacterized conser 99.6 7.5E-16 1.6E-20 149.2 9.4 242 144-477 182-425 (1113)
190 COG2319 FOG: WD40 repeat [Gene 99.6 1.1E-12 2.5E-17 128.8 31.1 288 92-479 151-443 (466)
191 KOG0290 Conserved WD40 repeat- 99.6 8.1E-14 1.7E-18 119.7 18.3 194 95-314 95-299 (364)
192 KOG1034 Transcriptional repres 99.6 1.1E-13 2.4E-18 120.8 19.2 147 158-319 41-198 (385)
193 KOG2110 Uncharacterized conser 99.6 9.8E-13 2.1E-17 116.8 25.3 240 97-481 6-251 (391)
194 KOG1587 Cytoplasmic dynein int 99.6 3.3E-13 7.1E-18 132.0 24.6 241 179-479 222-473 (555)
195 KOG1524 WD40 repeat-containing 99.6 1.8E-13 4E-18 126.7 21.3 172 92-317 100-271 (737)
196 KOG1523 Actin-related protein 99.6 7.1E-14 1.5E-18 121.6 16.7 216 95-351 9-229 (361)
197 KOG1354 Serine/threonine prote 99.6 1.1E-13 2.3E-18 121.7 16.2 346 97-475 26-431 (433)
198 KOG1963 WD40 repeat protein [G 99.6 2.7E-12 5.8E-17 126.1 27.7 190 103-317 23-307 (792)
199 KOG2110 Uncharacterized conser 99.6 1.2E-12 2.6E-17 116.3 22.9 184 99-321 49-237 (391)
200 PRK01742 tolB translocation pr 99.6 1.4E-13 3E-18 135.2 19.2 160 95-289 202-364 (429)
201 KOG2394 WD40 protein DMR-N9 [G 99.6 1.5E-13 3.3E-18 127.4 17.9 186 106-312 183-384 (636)
202 KOG1524 WD40 repeat-containing 99.6 2.9E-13 6.3E-18 125.4 18.7 201 108-350 75-278 (737)
203 KOG0649 WD40 repeat protein [G 99.5 3E-13 6.5E-18 113.3 16.0 135 158-300 13-158 (325)
204 KOG0771 Prolactin regulatory e 99.5 2.9E-13 6.2E-18 122.3 16.0 198 159-476 148-352 (398)
205 KOG2394 WD40 protein DMR-N9 [G 99.5 1.1E-12 2.3E-17 121.9 19.3 192 99-318 126-348 (636)
206 PRK11028 6-phosphogluconolacto 99.5 1.7E-11 3.7E-16 116.6 27.7 165 97-287 35-206 (330)
207 KOG1523 Actin-related protein 99.5 1.7E-12 3.6E-17 113.3 18.2 119 158-288 13-132 (361)
208 PF08662 eIF2A: Eukaryotic tra 99.5 1.9E-12 4.1E-17 111.8 17.9 114 158-293 62-185 (194)
209 KOG1517 Guanine nucleotide bin 99.5 2.3E-12 4.9E-17 128.6 20.4 201 98-319 1111-1321(1387)
210 KOG1310 WD40 repeat protein [G 99.5 6.1E-13 1.3E-17 123.7 14.6 234 146-416 44-305 (758)
211 KOG1538 Uncharacterized conser 99.5 1.1E-12 2.4E-17 124.6 15.4 218 91-351 48-286 (1081)
212 KOG1272 WD40-repeat-containing 99.5 1.9E-13 4.1E-18 124.6 9.5 175 96-312 129-303 (545)
213 KOG2321 WD40 repeat protein [G 99.4 2.1E-11 4.5E-16 114.3 19.3 256 98-475 53-340 (703)
214 KOG2139 WD40 repeat protein [G 99.4 5.5E-11 1.2E-15 105.6 20.6 140 158-317 101-253 (445)
215 PRK03629 tolB translocation pr 99.4 2.6E-10 5.6E-15 111.9 27.7 139 158-318 201-346 (429)
216 KOG0322 G-protein beta subunit 99.4 3E-12 6.5E-17 108.7 11.9 168 98-285 152-322 (323)
217 KOG2111 Uncharacterized conser 99.4 2.7E-10 5.8E-15 99.6 23.8 242 98-481 7-259 (346)
218 PRK04922 tolB translocation pr 99.4 4E-11 8.7E-16 118.1 21.1 161 94-290 201-372 (433)
219 KOG3881 Uncharacterized conser 99.4 4.5E-11 9.7E-16 107.2 19.0 181 98-300 107-292 (412)
220 PF08662 eIF2A: Eukaryotic tra 99.4 3.1E-11 6.8E-16 104.3 17.2 138 160-319 10-160 (194)
221 KOG4227 WD40 repeat protein [G 99.3 1.2E-10 2.7E-15 104.2 18.3 127 149-289 53-182 (609)
222 PRK01742 tolB translocation pr 99.3 5.9E-11 1.3E-15 116.6 18.0 118 179-318 184-307 (429)
223 PRK02889 tolB translocation pr 99.3 7.3E-11 1.6E-15 115.9 18.4 163 94-290 193-364 (427)
224 PRK05137 tolB translocation pr 99.3 2.3E-10 5E-15 112.8 21.9 184 93-318 198-392 (435)
225 KOG4497 Uncharacterized conser 99.3 4.2E-11 9.1E-16 104.9 14.2 135 161-318 14-149 (447)
226 PRK03629 tolB translocation pr 99.3 1.7E-10 3.7E-15 113.2 20.1 183 95-319 197-390 (429)
227 KOG3881 Uncharacterized conser 99.3 3.5E-10 7.5E-15 101.6 19.7 251 97-479 56-321 (412)
228 PF02239 Cytochrom_D1: Cytochr 99.3 7.1E-09 1.5E-13 98.8 29.3 170 100-295 40-211 (369)
229 PRK05137 tolB translocation pr 99.3 2.6E-09 5.5E-14 105.5 27.2 140 158-318 204-349 (435)
230 KOG1064 RAVE (regulator of V-A 99.3 3E-11 6.6E-16 126.7 13.1 162 97-294 2209-2374(2439)
231 KOG0280 Uncharacterized conser 99.3 3.1E-10 6.6E-15 98.2 16.0 192 96-315 69-266 (339)
232 PRK02889 tolB translocation pr 99.2 3.1E-09 6.7E-14 104.4 24.3 113 158-286 198-314 (427)
233 PRK04922 tolB translocation pr 99.2 1.9E-09 4.1E-14 106.2 22.5 115 158-288 206-326 (433)
234 KOG2111 Uncharacterized conser 99.2 1.7E-08 3.8E-13 88.5 24.8 145 158-319 97-243 (346)
235 PRK04792 tolB translocation pr 99.2 1E-08 2.2E-13 101.2 26.3 116 158-289 220-341 (448)
236 KOG4547 WD40 repeat-containing 99.2 8.8E-10 1.9E-14 104.3 17.6 175 105-313 2-195 (541)
237 TIGR02800 propeller_TolB tol-p 99.2 1.4E-09 3.1E-14 107.2 19.3 159 96-289 189-357 (417)
238 KOG1272 WD40-repeat-containing 99.2 1.4E-10 3.1E-15 106.2 10.5 195 97-336 210-407 (545)
239 PF02239 Cytochrom_D1: Cytochr 99.2 5.7E-09 1.2E-13 99.4 21.7 270 169-480 6-304 (369)
240 KOG1334 WD40 repeat protein [G 99.2 1E-09 2.2E-14 101.2 14.7 276 149-482 139-428 (559)
241 KOG0309 Conserved WD40 repeat- 99.1 7E-10 1.5E-14 107.2 12.7 183 97-311 25-210 (1081)
242 COG2706 3-carboxymuconate cycl 99.1 5.7E-07 1.2E-11 80.9 28.7 224 95-343 38-280 (346)
243 KOG0974 WD-repeat protein WDR6 99.1 1.3E-09 2.8E-14 109.5 13.4 151 101-287 138-289 (967)
244 PRK00178 tolB translocation pr 99.1 9.1E-08 2E-12 94.6 26.2 116 158-289 201-322 (430)
245 KOG3914 WD repeat protein WDR4 99.1 2.6E-09 5.7E-14 96.5 13.6 167 99-296 65-233 (390)
246 KOG0974 WD-repeat protein WDR6 99.1 1.2E-08 2.7E-13 102.6 19.6 196 161-480 93-290 (967)
247 KOG1240 Protein kinase contain 99.1 8.6E-08 1.9E-12 98.2 25.4 273 158-480 1051-1336(1431)
248 KOG2321 WD40 repeat protein [G 99.1 3.5E-09 7.6E-14 99.7 14.4 183 108-319 146-330 (703)
249 PF10282 Lactonase: Lactonase, 99.0 4.4E-07 9.5E-12 86.6 28.7 262 158-478 39-322 (345)
250 PRK00178 tolB translocation pr 99.0 2.4E-08 5.2E-13 98.7 20.6 160 94-289 196-366 (430)
251 PRK04792 tolB translocation pr 99.0 2.4E-08 5.1E-13 98.5 19.3 160 95-289 216-385 (448)
252 TIGR02800 propeller_TolB tol-p 99.0 2E-07 4.3E-12 91.9 25.7 140 158-318 192-337 (417)
253 PF10282 Lactonase: Lactonase, 99.0 3.3E-07 7.1E-12 87.5 25.9 265 98-415 38-323 (345)
254 KOG2314 Translation initiation 99.0 3.8E-07 8.2E-12 86.0 24.8 305 99-471 213-560 (698)
255 KOG4190 Uncharacterized conser 99.0 3.8E-09 8.1E-14 99.0 11.5 181 92-296 731-916 (1034)
256 KOG0280 Uncharacterized conser 99.0 1.5E-08 3.3E-13 87.9 13.5 162 99-288 124-286 (339)
257 KOG2315 Predicted translation 99.0 7.1E-07 1.5E-11 84.4 25.3 300 99-479 37-391 (566)
258 PF04762 IKI3: IKI3 family; I 98.9 3.1E-06 6.7E-11 89.9 32.6 201 97-319 76-321 (928)
259 KOG4547 WD40 repeat-containing 98.9 7.9E-08 1.7E-12 91.3 18.2 146 224-479 70-221 (541)
260 PRK01029 tolB translocation pr 98.9 6.7E-07 1.5E-11 87.6 25.5 143 158-318 187-342 (428)
261 COG2706 3-carboxymuconate cycl 98.9 1E-05 2.3E-10 73.0 30.4 295 117-481 15-324 (346)
262 KOG2041 WD40 repeat protein [G 98.9 1.3E-07 2.7E-12 91.7 18.7 171 97-287 15-187 (1189)
263 COG4946 Uncharacterized protei 98.9 5.7E-06 1.2E-10 76.9 27.7 172 107-320 331-506 (668)
264 KOG1409 Uncharacterized conser 98.9 4.1E-07 8.9E-12 80.9 19.4 178 95-299 23-241 (404)
265 KOG2695 WD40 repeat protein [G 98.9 1.2E-08 2.7E-13 90.4 9.6 129 158-297 255-387 (425)
266 PF15492 Nbas_N: Neuroblastoma 98.8 1.3E-06 2.8E-11 76.3 20.7 181 99-297 46-270 (282)
267 PRK01029 tolB translocation pr 98.8 3E-07 6.4E-12 90.1 19.1 182 99-314 233-426 (428)
268 KOG2041 WD40 repeat protein [G 98.8 1.1E-07 2.4E-12 92.0 15.1 151 158-317 17-171 (1189)
269 KOG1354 Serine/threonine prote 98.8 7.1E-07 1.5E-11 79.4 18.5 287 158-488 28-369 (433)
270 KOG1645 RING-finger-containing 98.8 2.6E-07 5.7E-12 83.8 15.7 80 208-290 190-270 (463)
271 PLN02919 haloacid dehalogenase 98.8 7.5E-06 1.6E-10 88.7 29.7 182 100-289 571-773 (1057)
272 KOG1064 RAVE (regulator of V-A 98.8 8.6E-09 1.9E-13 108.9 6.9 155 97-296 2252-2408(2439)
273 COG5170 CDC55 Serine/threonine 98.8 7.2E-08 1.6E-12 84.4 11.1 185 97-288 27-254 (460)
274 PF04762 IKI3: IKI3 family; I 98.8 3.8E-05 8.3E-10 81.8 33.7 348 96-481 120-567 (928)
275 KOG4532 WD40-like repeat conta 98.8 1.6E-06 3.4E-11 74.7 18.8 171 108-314 84-262 (344)
276 KOG2315 Predicted translation 98.7 2E-06 4.3E-11 81.5 20.3 186 95-319 164-371 (566)
277 KOG1409 Uncharacterized conser 98.7 4.9E-07 1.1E-11 80.4 13.2 233 204-485 17-277 (404)
278 KOG2314 Translation initiation 98.7 5.3E-06 1.1E-10 78.6 20.1 268 158-478 213-525 (698)
279 KOG4190 Uncharacterized conser 98.6 2.1E-07 4.6E-12 87.6 10.8 159 147-318 730-892 (1034)
280 PRK04043 tolB translocation pr 98.6 1E-05 2.2E-10 78.8 22.3 179 98-318 189-383 (419)
281 KOG0309 Conserved WD40 repeat- 98.6 4.8E-07 1E-11 88.1 12.3 185 99-316 70-259 (1081)
282 COG5354 Uncharacterized protei 98.6 2.7E-05 6E-10 73.1 22.5 265 95-416 31-350 (561)
283 KOG1912 WD40 repeat protein [G 98.6 5E-06 1.1E-10 81.7 18.0 135 158-314 18-167 (1062)
284 PF00400 WD40: WD domain, G-be 98.6 2.1E-07 4.6E-12 57.2 5.8 37 248-284 3-39 (39)
285 TIGR02658 TTQ_MADH_Hv methylam 98.5 9.5E-05 2.1E-09 69.3 25.5 74 104-187 53-136 (352)
286 PF15492 Nbas_N: Neuroblastoma 98.5 7.7E-05 1.7E-09 65.5 23.0 221 102-351 3-252 (282)
287 COG5354 Uncharacterized protei 98.5 3.5E-05 7.5E-10 72.5 22.1 273 96-416 71-397 (561)
288 KOG4714 Nucleoporin [Nuclear s 98.5 4.6E-07 1E-11 77.5 8.6 74 213-287 181-255 (319)
289 KOG2695 WD40 repeat protein [G 98.5 5.6E-07 1.2E-11 80.1 9.0 87 210-298 251-344 (425)
290 COG4946 Uncharacterized protei 98.5 2.4E-05 5.3E-10 72.8 19.5 185 103-318 273-459 (668)
291 KOG1832 HIV-1 Vpr-binding prot 98.5 4E-07 8.7E-12 90.4 8.3 193 92-317 1097-1316(1516)
292 PLN02919 haloacid dehalogenase 98.5 1.9E-05 4.2E-10 85.6 21.6 182 99-290 685-892 (1057)
293 PF00400 WD40: WD domain, G-be 98.5 5.7E-07 1.2E-11 55.2 6.0 35 205-240 5-39 (39)
294 PF07433 DUF1513: Protein of u 98.4 0.00012 2.6E-09 66.2 22.4 102 159-274 8-116 (305)
295 PRK04043 tolB translocation pr 98.4 3.7E-05 8.1E-10 74.9 20.1 98 213-318 189-292 (419)
296 KOG4532 WD40-like repeat conta 98.4 3.4E-05 7.3E-10 66.7 16.5 152 111-291 131-287 (344)
297 KOG3914 WD repeat protein WDR4 98.4 2.4E-06 5.2E-11 77.8 10.1 80 149-246 148-227 (390)
298 KOG4714 Nucleoporin [Nuclear s 98.4 2.1E-06 4.6E-11 73.6 8.9 75 157-243 181-255 (319)
299 COG5170 CDC55 Serine/threonine 98.4 1.4E-06 3E-11 76.6 7.9 191 97-298 86-322 (460)
300 KOG0882 Cyclophilin-related pe 98.2 2.6E-05 5.7E-10 72.1 13.2 240 92-365 49-311 (558)
301 KOG1008 Uncharacterized conser 98.2 4.4E-07 9.6E-12 87.2 1.9 191 97-314 57-255 (783)
302 TIGR02658 TTQ_MADH_Hv methylam 98.1 0.00042 9.2E-09 65.0 18.4 191 99-295 107-339 (352)
303 PF11768 DUF3312: Protein of u 98.1 0.0012 2.5E-08 64.1 21.5 77 209-290 257-333 (545)
304 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0052 1.1E-07 58.9 25.3 62 105-187 1-71 (353)
305 KOG2114 Vacuolar assembly/sort 98.0 0.0018 3.8E-08 65.3 21.7 196 98-318 27-231 (933)
306 PF11768 DUF3312: Protein of u 98.0 5.4E-05 1.2E-09 73.0 11.0 74 94-188 257-330 (545)
307 KOG1920 IkappaB kinase complex 97.9 0.019 4E-07 60.6 27.3 195 97-319 69-306 (1265)
308 TIGR03300 assembly_YfgL outer 97.9 0.0074 1.6E-07 58.6 24.0 152 107-293 104-266 (377)
309 TIGR03300 assembly_YfgL outer 97.9 0.011 2.4E-07 57.4 25.0 145 108-292 65-214 (377)
310 PF08450 SGL: SMP-30/Gluconola 97.8 0.0077 1.7E-07 54.5 21.9 182 99-314 42-237 (246)
311 PF07433 DUF1513: Protein of u 97.8 0.0067 1.5E-07 55.2 20.6 99 213-317 6-113 (305)
312 KOG1275 PAB-dependent poly(A) 97.8 0.00025 5.5E-09 71.5 11.7 148 106-286 185-342 (1118)
313 PF08450 SGL: SMP-30/Gluconola 97.8 0.0043 9.3E-08 56.2 19.1 151 96-275 85-244 (246)
314 KOG1645 RING-finger-containing 97.8 0.00012 2.6E-09 67.0 8.5 76 158-247 196-271 (463)
315 KOG1912 WD40 repeat protein [G 97.7 0.012 2.5E-07 59.0 21.6 186 95-314 54-284 (1062)
316 KOG2114 Vacuolar assembly/sort 97.7 0.0032 7E-08 63.5 17.8 188 92-298 60-256 (933)
317 KOG1275 PAB-dependent poly(A) 97.7 0.0016 3.4E-08 66.1 15.5 189 226-478 149-342 (1118)
318 KOG3617 WD40 and TPR repeat-co 97.7 0.00099 2.1E-08 66.9 13.9 107 102-242 21-131 (1416)
319 KOG2066 Vacuolar assembly/sort 97.7 0.0045 9.8E-08 62.1 18.1 124 158-312 42-170 (846)
320 KOG3617 WD40 and TPR repeat-co 97.7 0.0032 6.9E-08 63.4 16.9 139 161-317 21-164 (1416)
321 PF06977 SdiA-regulated: SdiA- 97.6 0.046 1E-06 48.9 22.2 179 93-294 18-208 (248)
322 PF13360 PQQ_2: PQQ-like domai 97.6 0.043 9.4E-07 49.2 22.8 110 170-296 38-150 (238)
323 KOG3621 WD40 repeat-containing 97.5 0.05 1.1E-06 54.2 22.4 113 161-287 39-155 (726)
324 KOG1008 Uncharacterized conser 97.5 3.8E-05 8.2E-10 74.3 1.3 162 97-287 103-276 (783)
325 KOG2066 Vacuolar assembly/sort 97.5 0.0043 9.3E-08 62.2 15.2 145 105-287 80-234 (846)
326 COG3490 Uncharacterized protei 97.5 0.017 3.7E-07 51.1 16.8 101 161-275 73-180 (366)
327 KOG1920 IkappaB kinase complex 97.4 0.029 6.3E-07 59.2 21.0 231 212-479 69-323 (1265)
328 COG0823 TolB Periplasmic compo 97.4 0.0058 1.2E-07 59.5 15.1 73 213-289 194-273 (425)
329 COG0823 TolB Periplasmic compo 97.3 0.0053 1.2E-07 59.7 14.0 184 97-318 193-385 (425)
330 KOG0882 Cyclophilin-related pe 97.3 0.002 4.3E-08 60.1 10.1 144 158-320 12-162 (558)
331 PF00930 DPPIV_N: Dipeptidyl p 97.3 0.15 3.2E-06 49.0 23.0 213 179-416 23-270 (353)
332 smart00320 WD40 WD40 repeats. 97.2 0.00064 1.4E-08 40.5 4.4 36 249-284 5-40 (40)
333 KOG1832 HIV-1 Vpr-binding prot 97.2 0.0013 2.8E-08 66.5 8.3 67 248-318 1093-1159(1516)
334 PRK02888 nitrous-oxide reducta 97.2 0.04 8.7E-07 55.2 18.3 74 213-287 322-405 (635)
335 KOG3621 WD40 repeat-containing 97.1 0.0053 1.1E-07 60.7 11.3 120 99-243 36-155 (726)
336 PF04053 Coatomer_WDAD: Coatom 97.1 0.073 1.6E-06 52.2 18.8 140 98-286 34-173 (443)
337 smart00320 WD40 WD40 repeats. 97.0 0.0013 2.7E-08 39.1 4.3 32 208-240 9-40 (40)
338 PF08596 Lgl_C: Lethal giant l 97.0 0.047 1E-06 52.7 16.8 182 96-296 86-300 (395)
339 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.071 1.5E-06 40.5 13.9 101 158-281 2-109 (111)
340 PF14583 Pectate_lyase22: Olig 97.0 0.32 6.9E-06 46.0 21.3 172 235-413 169-380 (386)
341 PF06977 SdiA-regulated: SdiA- 97.0 0.22 4.8E-06 44.6 19.3 116 158-287 24-148 (248)
342 KOG4640 Anaphase-promoting com 97.0 0.0044 9.6E-08 60.5 9.0 93 213-312 22-115 (665)
343 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.28 6.1E-06 43.1 19.4 117 161-296 16-133 (354)
344 PF00780 CNH: CNH domain; Int 96.8 0.38 8.2E-06 44.3 21.6 159 105-290 4-169 (275)
345 PF04841 Vps16_N: Vps16, N-ter 96.7 0.55 1.2E-05 45.9 21.9 92 218-319 185-276 (410)
346 PF06433 Me-amine-dh_H: Methyl 96.7 0.34 7.4E-06 45.0 18.9 160 101-287 40-214 (342)
347 PRK02888 nitrous-oxide reducta 96.7 0.02 4.4E-07 57.2 11.7 116 158-276 323-451 (635)
348 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.076 1.7E-06 40.3 12.1 97 103-237 9-109 (111)
349 PF08553 VID27: VID27 cytoplas 96.7 0.085 1.9E-06 54.9 16.2 86 226-317 544-633 (794)
350 KOG3630 Nuclear pore complex, 96.6 0.051 1.1E-06 57.1 14.1 159 158-320 103-261 (1405)
351 PRK11138 outer membrane biogen 96.6 0.85 1.8E-05 44.5 24.4 151 108-291 120-279 (394)
352 PF12894 Apc4_WD40: Anaphase-p 96.5 0.0083 1.8E-07 37.9 5.2 31 97-127 12-42 (47)
353 PF02897 Peptidase_S9_N: Proly 96.5 0.3 6.4E-06 48.1 19.0 165 99-289 126-312 (414)
354 KOG4640 Anaphase-promoting com 96.5 0.017 3.6E-07 56.6 9.5 91 158-265 23-114 (665)
355 PF15390 DUF4613: Domain of un 96.4 0.13 2.7E-06 50.6 14.5 124 158-287 59-187 (671)
356 PF08596 Lgl_C: Lethal giant l 96.2 0.12 2.5E-06 50.0 13.7 155 98-286 3-173 (395)
357 COG3391 Uncharacterized conser 96.2 0.79 1.7E-05 44.4 19.4 182 99-318 76-268 (381)
358 PF08553 VID27: VID27 cytoplas 96.2 0.13 2.8E-06 53.6 14.4 102 170-286 545-647 (794)
359 PF12894 Apc4_WD40: Anaphase-p 96.0 0.024 5.1E-07 35.8 5.2 34 256-290 11-44 (47)
360 COG3391 Uncharacterized conser 96.0 1.6 3.5E-05 42.3 23.5 114 159-289 77-193 (381)
361 KOG2444 WD40 repeat protein [G 96.0 0.022 4.7E-07 48.9 6.5 104 170-287 72-178 (238)
362 KOG2395 Protein involved in va 96.0 0.2 4.4E-06 48.4 13.4 154 266-477 343-499 (644)
363 KOG1897 Damage-specific DNA bi 95.6 3.6 7.8E-05 43.4 25.3 62 396-481 840-901 (1096)
364 PF04053 Coatomer_WDAD: Coatom 95.6 0.28 6.1E-06 48.1 13.2 125 158-318 35-160 (443)
365 COG3204 Uncharacterized protei 95.4 1.9 4.2E-05 38.9 21.1 174 92-287 81-264 (316)
366 PF02897 Peptidase_S9_N: Proly 95.3 3.2 6.9E-05 40.8 24.8 118 158-288 126-262 (414)
367 PF14583 Pectate_lyase22: Olig 95.3 1 2.3E-05 42.7 15.4 132 215-352 39-211 (386)
368 PF03178 CPSF_A: CPSF A subuni 95.3 1.3 2.9E-05 41.7 16.6 158 99-286 29-202 (321)
369 PF03178 CPSF_A: CPSF A subuni 95.2 2.8 6E-05 39.6 19.2 53 234-289 62-118 (321)
370 PF13360 PQQ_2: PQQ-like domai 95.2 1.6 3.5E-05 38.9 16.3 150 107-290 35-195 (238)
371 KOG2444 WD40 repeat protein [G 95.1 0.12 2.5E-06 44.6 7.6 62 108-186 70-131 (238)
372 PF04841 Vps16_N: Vps16, N-ter 95.0 3.8 8.3E-05 40.1 20.8 31 448-478 216-246 (410)
373 PF07995 GSDH: Glucose / Sorbo 95.0 3.3 7.1E-05 39.3 23.7 112 158-279 4-136 (331)
374 KOG2395 Protein involved in va 95.0 0.95 2.1E-05 44.1 14.1 133 165-317 343-486 (644)
375 KOG2079 Vacuolar assembly/sort 94.9 0.99 2.1E-05 47.8 14.9 73 97-187 131-203 (1206)
376 COG3490 Uncharacterized protei 94.9 1.7 3.6E-05 39.1 14.2 101 215-319 71-178 (366)
377 PRK13616 lipoprotein LpqB; Pro 94.6 5.2 0.00011 41.1 19.6 94 212-318 350-463 (591)
378 KOG2079 Vacuolar assembly/sort 94.6 0.075 1.6E-06 55.6 6.3 88 226-315 101-188 (1206)
379 KOG3630 Nuclear pore complex, 94.5 0.28 6.2E-06 51.8 10.1 158 99-276 103-263 (1405)
380 PRK11138 outer membrane biogen 94.3 5.6 0.00012 38.8 24.6 157 108-294 69-231 (394)
381 KOG4499 Ca2+-binding protein R 94.3 3.4 7.4E-05 36.0 14.6 109 160-275 162-273 (310)
382 PRK13616 lipoprotein LpqB; Pro 93.9 2.7 5.7E-05 43.2 15.8 162 99-282 399-564 (591)
383 PF12234 Rav1p_C: RAVE protein 93.7 2.1 4.6E-05 43.7 14.2 106 213-324 31-150 (631)
384 KOG1916 Nuclear protein, conta 93.5 0.36 7.8E-06 49.8 8.5 169 97-291 133-328 (1283)
385 COG3386 Gluconolactonase [Carb 93.4 3.1 6.7E-05 38.8 14.1 108 159-276 166-275 (307)
386 TIGR02604 Piru_Ver_Nterm putat 93.4 3.6 7.9E-05 39.7 15.2 153 98-275 15-202 (367)
387 PF08728 CRT10: CRT10; InterP 93.3 4.4 9.5E-05 42.0 15.9 167 108-285 49-245 (717)
388 PF10313 DUF2415: Uncharacteri 93.3 0.31 6.7E-06 29.9 4.8 31 257-287 1-34 (43)
389 KOG4499 Ca2+-binding protein R 93.3 0.79 1.7E-05 39.8 9.0 96 214-313 160-264 (310)
390 PF06433 Me-amine-dh_H: Methyl 93.3 7.1 0.00015 36.5 19.2 118 99-245 97-216 (342)
391 PF05694 SBP56: 56kDa selenium 93.2 1.9 4.2E-05 41.4 12.3 64 212-275 312-392 (461)
392 PF14870 PSII_BNR: Photosynthe 93.2 7.2 0.00016 36.2 18.0 154 97-283 145-301 (302)
393 PF10313 DUF2415: Uncharacteri 93.0 0.39 8.5E-06 29.4 4.9 31 213-243 2-34 (43)
394 KOG4649 PQQ (pyrrolo-quinoline 93.0 6.2 0.00013 35.0 15.2 75 217-295 16-90 (354)
395 PF12234 Rav1p_C: RAVE protein 93.0 2.5 5.4E-05 43.2 13.4 120 98-242 31-156 (631)
396 PF10647 Gmad1: Lipoprotein Lp 91.7 10 0.00022 34.4 15.0 113 158-286 26-144 (253)
397 COG3386 Gluconolactonase [Carb 91.5 12 0.00026 34.9 15.7 97 211-312 162-264 (307)
398 PF10168 Nup88: Nuclear pore c 91.0 8.6 0.00019 40.5 15.2 91 154-247 83-184 (717)
399 PHA02713 hypothetical protein; 90.1 3.8 8.3E-05 42.0 11.8 65 222-289 463-536 (557)
400 KOG2247 WD40 repeat-containing 89.9 0.059 1.3E-06 51.5 -1.3 135 161-317 40-174 (615)
401 cd00216 PQQ_DH Dehydrogenases 89.8 24 0.00052 35.6 23.2 60 235-295 257-328 (488)
402 PF07569 Hira: TUP1-like enhan 89.1 3.1 6.7E-05 36.7 8.9 67 219-287 18-96 (219)
403 PF07569 Hira: TUP1-like enhan 88.8 2.7 5.8E-05 37.1 8.3 75 103-186 17-94 (219)
404 PF14655 RAB3GAP2_N: Rab3 GTPa 88.0 6.6 0.00014 38.2 11.0 87 207-296 303-408 (415)
405 cd00216 PQQ_DH Dehydrogenases 87.9 27 0.00059 35.2 15.9 64 232-296 364-434 (488)
406 TIGR02604 Piru_Ver_Nterm putat 87.8 20 0.00044 34.5 14.5 107 158-276 16-143 (367)
407 PF15390 DUF4613: Domain of un 87.6 28 0.00061 35.0 14.7 127 96-244 56-188 (671)
408 PF05096 Glu_cyclase_2: Glutam 87.3 22 0.00048 32.1 19.0 160 99-294 47-211 (264)
409 PF14781 BBS2_N: Ciliary BBSom 86.8 14 0.0003 29.4 12.6 118 101-243 3-126 (136)
410 TIGR02276 beta_rpt_yvtn 40-res 86.8 2.8 6.1E-05 25.3 5.3 31 266-296 1-32 (42)
411 COG5167 VID27 Protein involved 86.7 12 0.00025 36.8 11.4 151 264-474 475-628 (776)
412 PF11715 Nup160: Nucleoporin N 86.7 3.1 6.6E-05 42.7 8.6 73 222-295 157-257 (547)
413 PF11635 Med16: Mediator compl 86.2 52 0.0011 35.3 21.0 129 212-352 181-344 (753)
414 KOG4441 Proteins containing BT 86.1 20 0.00043 36.9 13.9 151 105-289 282-455 (571)
415 PF10214 Rrn6: RNA polymerase 85.6 56 0.0012 35.1 24.4 185 95-288 78-278 (765)
416 PRK13684 Ycf48-like protein; P 85.2 35 0.00075 32.4 16.7 152 98-284 174-329 (334)
417 PF14727 PHTB1_N: PTHB1 N-term 85.0 40 0.00088 33.0 28.5 160 107-287 36-205 (418)
418 PF14761 HPS3_N: Hermansky-Pud 85.0 25 0.00054 30.6 12.4 50 269-323 29-80 (215)
419 KOG1916 Nuclear protein, conta 84.8 1 2.2E-05 46.7 3.8 130 158-300 135-284 (1283)
420 KOG2247 WD40 repeat-containing 84.7 0.16 3.5E-06 48.7 -1.7 141 102-278 40-180 (615)
421 PF10168 Nup88: Nuclear pore c 84.6 31 0.00067 36.5 14.5 76 212-289 85-182 (717)
422 KOG4441 Proteins containing BT 84.5 22 0.00048 36.6 13.4 105 169-288 429-548 (571)
423 KOG4460 Nuclear pore complex, 84.3 7.3 0.00016 38.2 9.0 33 384-416 166-200 (741)
424 PRK10115 protease 2; Provision 84.3 40 0.00088 35.6 15.5 114 158-285 129-254 (686)
425 PHA03098 kelch-like protein; P 84.0 19 0.00042 36.7 12.9 64 222-288 437-513 (534)
426 TIGR03075 PQQ_enz_alc_DH PQQ-d 83.7 28 0.00062 35.4 13.7 61 233-296 440-500 (527)
427 PF12657 TFIIIC_delta: Transcr 83.2 10 0.00023 31.9 8.9 29 157-186 87-120 (173)
428 PF14761 HPS3_N: Hermansky-Pud 81.8 28 0.00061 30.3 10.7 104 169-287 30-164 (215)
429 KOG2377 Uncharacterized conser 81.7 33 0.00071 33.4 11.9 117 157-287 68-186 (657)
430 PLN00033 photosystem II stabil 81.2 57 0.0012 31.8 18.1 111 158-283 283-396 (398)
431 KOG1900 Nuclear pore complex, 81.0 31 0.00066 38.2 12.9 117 163-287 135-273 (1311)
432 PF12768 Rax2: Cortical protei 81.0 40 0.00088 31.0 12.3 118 179-313 16-147 (281)
433 PF05694 SBP56: 56kDa selenium 80.7 59 0.0013 31.8 18.5 33 257-289 312-345 (461)
434 PF07676 PD40: WD40-like Beta 80.1 6 0.00013 23.5 4.7 28 256-283 8-38 (39)
435 COG5290 IkappaB kinase complex 79.0 87 0.0019 32.9 14.5 30 211-241 112-141 (1243)
436 PHA02713 hypothetical protein; 78.5 23 0.0005 36.4 11.1 21 107-127 303-329 (557)
437 PF07995 GSDH: Glucose / Sorbo 77.7 65 0.0014 30.5 13.2 28 446-473 303-330 (331)
438 KOG4460 Nuclear pore complex, 77.3 64 0.0014 32.1 12.6 83 212-295 104-207 (741)
439 PF08728 CRT10: CRT10; InterP 77.3 24 0.00053 36.8 10.5 129 98-241 102-245 (717)
440 KOG2280 Vacuolar assembly/sort 76.9 1E+02 0.0022 32.3 16.9 59 257-318 217-275 (829)
441 PF14870 PSII_BNR: Photosynthe 76.6 38 0.00083 31.5 10.9 70 211-284 144-213 (302)
442 PF12657 TFIIIC_delta: Transcr 76.3 19 0.00041 30.3 8.3 32 212-243 86-122 (173)
443 PF10647 Gmad1: Lipoprotein Lp 75.0 65 0.0014 29.1 19.8 98 213-318 25-127 (253)
444 KOG2280 Vacuolar assembly/sort 75.0 1.1E+02 0.0024 32.0 14.0 30 213-244 85-114 (829)
445 KOG1983 Tomosyn and related SN 74.7 53 0.0012 36.3 12.9 30 99-128 38-67 (993)
446 COG3204 Uncharacterized protei 74.6 70 0.0015 29.4 17.0 79 208-289 82-161 (316)
447 PHA02790 Kelch-like protein; P 74.6 83 0.0018 31.7 13.7 61 222-288 407-472 (480)
448 PRK10115 protease 2; Provision 74.1 1.3E+02 0.0027 32.1 22.9 115 99-242 129-255 (686)
449 PF05096 Glu_cyclase_2: Glutam 73.1 73 0.0016 28.9 18.0 119 158-295 47-166 (264)
450 PF07676 PD40: WD40-like Beta 71.9 17 0.00036 21.5 5.1 28 212-239 9-38 (39)
451 PF14655 RAB3GAP2_N: Rab3 GTPa 71.8 25 0.00055 34.3 8.8 41 92-132 303-343 (415)
452 PF10214 Rrn6: RNA polymerase 71.0 1.6E+02 0.0034 31.8 23.7 99 212-313 146-257 (765)
453 smart00564 PQQ beta-propeller 70.6 9.3 0.0002 21.5 3.6 23 269-291 7-29 (33)
454 PF11715 Nup160: Nucleoporin N 70.2 18 0.00039 37.1 8.0 33 212-245 215-251 (547)
455 PHA03098 kelch-like protein; P 69.9 73 0.0016 32.6 12.3 25 222-247 389-419 (534)
456 KOG2377 Uncharacterized conser 69.3 1.2E+02 0.0026 29.8 17.7 129 215-348 26-173 (657)
457 TIGR03606 non_repeat_PQQ dehyd 68.7 1.2E+02 0.0025 30.3 12.6 111 158-277 32-166 (454)
458 PF01011 PQQ: PQQ enzyme repea 68.5 20 0.00044 21.1 4.8 27 270-296 2-28 (38)
459 PF07250 Glyoxal_oxid_N: Glyox 68.2 91 0.002 28.0 11.9 49 237-287 49-100 (243)
460 PF03088 Str_synth: Strictosid 66.9 44 0.00095 24.5 7.2 50 231-283 34-85 (89)
461 PF01436 NHL: NHL repeat; Int 65.6 18 0.00039 19.7 3.8 24 100-123 5-28 (28)
462 TIGR03606 non_repeat_PQQ dehyd 64.7 1.6E+02 0.0034 29.4 14.4 30 98-127 31-60 (454)
463 PF11635 Med16: Mediator compl 64.3 2.1E+02 0.0046 30.8 16.8 70 211-281 259-345 (753)
464 PLN00033 photosystem II stabil 64.0 1.5E+02 0.0032 29.0 13.1 116 97-239 281-396 (398)
465 PF08954 DUF1900: Domain of un 63.4 28 0.0006 28.0 6.1 56 256-313 10-67 (136)
466 PF01731 Arylesterase: Arylest 62.3 39 0.00083 24.6 6.1 31 257-287 54-85 (86)
467 TIGR02276 beta_rpt_yvtn 40-res 62.2 20 0.00042 21.4 4.1 23 394-416 2-24 (42)
468 PF12341 DUF3639: Protein of u 60.7 26 0.00056 19.1 3.7 26 97-124 2-27 (27)
469 PF00780 CNH: CNH domain; Int 60.5 1.3E+02 0.0029 27.2 21.4 128 99-245 38-168 (275)
470 TIGR03118 PEPCTERM_chp_1 conse 60.2 1.5E+02 0.0032 27.6 22.0 127 154-287 24-171 (336)
471 COG5290 IkappaB kinase complex 58.1 1.2E+02 0.0027 31.9 10.6 32 95-126 111-142 (1243)
472 PF13449 Phytase-like: Esteras 57.4 1.7E+02 0.0038 27.6 16.8 167 97-274 20-232 (326)
473 PF13570 PQQ_3: PQQ-like domai 56.9 21 0.00045 21.3 3.5 21 267-287 20-40 (40)
474 PF14781 BBS2_N: Ciliary BBSom 55.0 1.1E+02 0.0024 24.5 12.4 116 161-288 4-127 (136)
475 COG4590 ABC-type uncharacteriz 54.2 1.2E+02 0.0027 29.6 9.4 168 96-290 220-390 (733)
476 PF13449 Phytase-like: Esteras 53.9 2E+02 0.0043 27.2 18.3 116 157-276 21-166 (326)
477 TIGR03548 mutarot_permut cycli 45.9 2.6E+02 0.0056 26.2 14.2 24 222-246 171-198 (323)
478 KOG1900 Nuclear pore complex, 45.2 3.7E+02 0.0079 30.4 12.3 40 446-485 240-279 (1311)
479 PF02333 Phytase: Phytase; In 43.7 3.1E+02 0.0068 26.5 15.7 161 106-287 66-238 (381)
480 COG4590 ABC-type uncharacteriz 39.4 90 0.0019 30.5 6.2 146 158-318 223-373 (733)
481 TIGR03075 PQQ_enz_alc_DH PQQ-d 38.1 3.8E+02 0.0083 27.4 11.1 68 226-295 122-198 (527)
482 PF10395 Utp8: Utp8 family; I 36.2 5.4E+02 0.012 27.1 15.3 30 97-126 130-159 (670)
483 COG5167 VID27 Protein involved 35.5 4.8E+02 0.01 26.3 14.2 83 230-317 533-618 (776)
484 KOG3522 Predicted guanine nucl 35.2 3.8E+02 0.0082 28.8 10.1 123 91-243 576-698 (925)
485 PF12768 Rax2: Cortical protei 33.9 93 0.002 28.6 5.3 62 397-480 6-74 (281)
486 KOG1520 Predicted alkaloid syn 33.8 4.4E+02 0.0095 25.4 13.1 51 230-283 195-247 (376)
487 TIGR03074 PQQ_membr_DH membran 33.6 6.4E+02 0.014 27.2 13.6 67 226-295 262-353 (764)
488 KOG3616 Selective LIM binding 32.9 6.2E+02 0.014 26.9 12.7 35 95-129 13-47 (1636)
489 KOG1898 Splicing factor 3b, su 32.4 7.4E+02 0.016 27.6 14.7 106 233-351 911-1018(1205)
490 PF06739 SBBP: Beta-propeller 32.4 87 0.0019 18.6 3.3 21 98-118 14-34 (38)
491 KOG1896 mRNA cleavage and poly 32.3 7.9E+02 0.017 27.8 13.4 143 108-286 1046-1213(1366)
492 COG3823 Glutamine cyclotransfe 32.0 3.5E+02 0.0076 23.7 12.9 68 226-295 58-128 (262)
493 TIGR03032 conserved hypothetic 31.9 4.4E+02 0.0095 24.8 15.8 53 217-276 208-260 (335)
494 PF01731 Arylesterase: Arylest 31.7 90 0.0019 22.8 3.9 31 213-243 55-85 (86)
495 COG1770 PtrB Protease II [Amin 30.9 6.4E+02 0.014 26.4 17.2 42 249-290 308-352 (682)
496 smart00036 CNH Domain found in 30.8 4.5E+02 0.0097 24.5 24.1 115 106-242 11-131 (302)
497 TIGR02608 delta_60_rpt delta-6 30.1 1.5E+02 0.0032 19.5 4.4 18 99-116 3-20 (55)
498 PF03088 Str_synth: Strictosid 29.5 2.3E+02 0.005 20.8 7.0 24 158-182 59-82 (89)
499 KOG3616 Selective LIM binding 28.8 1.8E+02 0.0039 30.5 6.6 28 158-187 17-44 (1636)
500 TIGR03118 PEPCTERM_chp_1 conse 27.8 5.1E+02 0.011 24.2 15.0 63 230-296 218-289 (336)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.1e-48 Score=336.91 Aligned_cols=306 Identities=18% Similarity=0.287 Sum_probs=259.9
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.+..|.+.|.|++|+|+|..||+|+.|.++|+||+.+..... +...|..+ |.|++|+||++ .
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~--------t~KgH~~W---------VlcvawsPDgk-~ 171 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF--------TCKGHKNW---------VLCVAWSPDGK-K 171 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce--------eecCCccE---------EEEEEECCCcc-h
Confidence 356677889999999999999999999999999999855444 45566666 99999999996 9
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC----cEEEEEeCCCcEEEEECCCCCc
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT----SRLIASDTHGVVNIWDRRVGVL 246 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----~~l~s~s~dg~i~iwd~~~~~~ 246 (489)
|++|+.| |+|++||...+... ..++.+|...|++++|.|-+. .+|++++.||.|+|||+..+.
T Consensus 172 iASG~~d-g~I~lwdpktg~~~-----------g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~- 238 (480)
T KOG0271|consen 172 IASGSKD-GSIRLWDPKTGQQI-----------GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT- 238 (480)
T ss_pred hhccccC-CeEEEecCCCCCcc-----------cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-
Confidence 9999999 99999998544322 223489999999999987431 389999999999999999877
Q ss_pred CceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCC-----------Cc
Q 037120 247 PSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASM-----------LE 315 (489)
Q Consensus 247 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----------~~ 315 (489)
++..+.+|+.+|+|+.|--+| ++++|+.|++|++|+...|++...+++|... |+.++.+.| +.
T Consensus 239 -~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahw----vN~lalsTdy~LRtgaf~~t~~ 312 (480)
T KOG0271|consen 239 -CVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHW----VNHLALSTDYVLRTGAFDHTGR 312 (480)
T ss_pred -EEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchh----eeeeeccchhhhhccccccccc
Confidence 888888999999999997554 7889999999999999999999999999988 999887732 32
Q ss_pred c-------------------------eeec-----------------cccceeeccceeEEEeCCCCCeEEEEEecCC--
Q 037120 316 K-------------------------IGTL-----------------KAQSKIVSQEIHSIDLDPSCSYQLAFHLDDG-- 351 (489)
Q Consensus 316 ~-------------------------i~~~-----------------~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~-- 351 (489)
. +.+. ......|+..|..+.|+||+++++.++.|..
T Consensus 313 ~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVk 392 (480)
T KOG0271|consen 313 KPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVK 392 (480)
T ss_pred cCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccccee
Confidence 2 1110 0123355778999999999999999999988
Q ss_pred -ce----EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccC
Q 037120 352 -WS----GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYN 426 (489)
Q Consensus 352 -w~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~ 426 (489)
|. +.+..+.||+..+|.+ +|+.+ .+++++||.|.+++|||+.+.
T Consensus 393 LW~g~tGk~lasfRGHv~~VYqv--awsaD-------------------sRLlVS~SkDsTLKvw~V~tk---------- 441 (480)
T KOG0271|consen 393 LWDGRTGKFLASFRGHVAAVYQV--AWSAD-------------------SRLLVSGSKDSTLKVWDVRTK---------- 441 (480)
T ss_pred eeeCCCcchhhhhhhccceeEEE--EeccC-------------------ccEEEEcCCCceEEEEEeeee----------
Confidence 64 6677888999999888 88888 889999999999999999999
Q ss_pred cccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 427 EDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
+....+. ||.+.|.++.|+|+|..+++|+.|..+++|.
T Consensus 442 Kl~~DLp------------Gh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 442 KLKQDLP------------GHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eecccCC------------CCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 7777777 9999999999999999999999999999996
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-41 Score=301.61 Aligned_cols=284 Identities=16% Similarity=0.158 Sum_probs=230.3
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC-CCCEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA-NQDEVAC 173 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~-~~~~l~s 173 (489)
....|..+.|+++++.||||+.+|.++||+.... .....+.+|+.. |.++.|+|. ....+++
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--------------~~~~~l~gH~~~---v~~~~fhP~~~~~~lat 236 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--------------NLLQTLRGHTSR---VGAAVFHPVDSDLNLAT 236 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCc--------------ceeEEEeccccc---eeeEEEccCCCccceee
Confidence 4456999999999999999999999999999883 223345778888 888999999 4668999
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST 253 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 253 (489)
++.| |++++|++... ..+..+.+|...|..++|+|+|+ +|+|++.|.+-++||++++. .+-...
T Consensus 237 ~s~D-gtvklw~~~~e------------~~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~--ElL~QE 300 (459)
T KOG0272|consen 237 ASAD-GTVKLWKLSQE------------TPLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKS--ELLLQE 300 (459)
T ss_pred eccC-CceeeeccCCC------------cchhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccch--hhHhhc
Confidence 9999 99999999322 22334589999999999999999 99999999999999999976 344567
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeE
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHS 333 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~ 333 (489)
+|+..|.+++|+|||.++++||.|..-+|||+|+|+++..+.+|... |.+|+|+|+|..++
T Consensus 301 GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~----I~~V~fsPNGy~lA--------------- 361 (459)
T KOG0272|consen 301 GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKE----ILSVAFSPNGYHLA--------------- 361 (459)
T ss_pred ccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccc----eeeEeECCCceEEe---------------
Confidence 99999999999999999999999999999999999999999998876 77766666655444
Q ss_pred EEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEec
Q 037120 334 IDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDF 413 (489)
Q Consensus 334 ~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~ 413 (489)
+++.|+. .+++++..... ++.++..- -.+..+.|.|..+.+|+|+|.|++++||.-
T Consensus 362 -----------Tgs~Dnt-~kVWDLR~r~~--ly~ipAH~----------nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 362 -----------TGSSDNT-CKVWDLRMRSE--LYTIPAHS----------NLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred -----------ecCCCCc-EEEeeeccccc--ceeccccc----------chhhheEecccCCeEEEEcccCcceeeecC
Confidence 4444443 12333332221 22221111 112346788888999999999999999999
Q ss_pred cCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 414 FPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
.+. ..++.+. ||++.|.+++.+|++..|+|++.|.++++|.
T Consensus 418 ~~~----------~~~ksLa------------GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 418 RTW----------SPLKSLA------------GHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCc----------ccchhhc------------CCccceEEEEeccCCceEEEeccCceeeecc
Confidence 988 8888888 9999999999999999999999999999996
No 3
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.5e-38 Score=265.52 Aligned_cols=293 Identities=19% Similarity=0.229 Sum_probs=230.9
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.+..|...|.++.|++|.++|++++.||.+.|||.-+...+. .+.-...+ |..++|+|.++ .
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h--------aipl~s~W---------VMtCA~sPSg~-~ 111 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH--------AIPLPSSW---------VMTCAYSPSGN-F 111 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee--------EEecCcee---------EEEEEECCCCC-e
Confidence 467788889999999999999999999999999987743333 12333446 99999999985 9
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
+++|+.| +...||++.....+ ...+..+. +.+|+.-+.++.|.+|+ +|+|+|.|.++.+||+++++ .++
T Consensus 112 VAcGGLd-N~Csiy~ls~~d~~--g~~~v~r~----l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~--~~~ 180 (343)
T KOG0286|consen 112 VACGGLD-NKCSIYPLSTRDAE--GNVRVSRE----LAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQ--QTQ 180 (343)
T ss_pred EEecCcC-ceeEEEeccccccc--ccceeeee----ecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccce--EEE
Confidence 9999999 99999999643222 12222333 48999999999999855 69999999999999999988 677
Q ss_pred eccCCCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeecc
Q 037120 251 LSTGSHGTLNSIQLHA-ENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQ 329 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p-~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~ 329 (489)
.+.+|.+.|.+++++| +++.+++|+.|++.+|||+|.+.+.++|.+|+.- |++++|.|+|..+++-..
T Consensus 181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD----INsv~ffP~G~afatGSD------- 249 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD----INSVRFFPSGDAFATGSD------- 249 (343)
T ss_pred EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccc----cceEEEccCCCeeeecCC-------
Confidence 7889999999999999 9999999999999999999999999999999977 999999999987765221
Q ss_pred ceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEE
Q 037120 330 EIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIH 409 (489)
Q Consensus 330 ~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~ 409 (489)
+.-.++.++...+...+|....... .+..+.|+-. ++++.+|..|.++.
T Consensus 250 --------------------D~tcRlyDlRaD~~~a~ys~~~~~~----------gitSv~FS~S-GRlLfagy~d~~c~ 298 (343)
T KOG0286|consen 250 --------------------DATCRLYDLRADQELAVYSHDSIIC----------GITSVAFSKS-GRLLFAGYDDFTCN 298 (343)
T ss_pred --------------------CceeEEEeecCCcEEeeeccCcccC----------CceeEEEccc-ccEEEeeecCCcee
Confidence 1111233333333333332111100 1112233333 77888889999999
Q ss_pred EEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 410 LLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 410 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
|||.-.+ +.+..+. ||++.|.++..+|+|..+++||+|..++||+
T Consensus 299 vWDtlk~----------e~vg~L~------------GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 299 VWDTLKG----------ERVGVLA------------GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred Eeecccc----------ceEEEee------------ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999988 8888888 9999999999999999999999999999995
No 4
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.7e-35 Score=252.14 Aligned_cols=289 Identities=13% Similarity=0.176 Sum_probs=226.1
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..++..|.++.|+|+|.+||+|+.|..|.+|++.. ..+.-..+.+|.+. |..+.|.+++. .+
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g-------------dceN~~~lkgHsgA---VM~l~~~~d~s-~i 105 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG-------------DCENFWVLKGHSGA---VMELHGMRDGS-HI 105 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc-------------cccceeeeccccce---eEeeeeccCCC-EE
Confidence 455666799999999999999999999999999765 23333334688888 88899999986 67
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| .+|+.||+..+.. .+. +.+|..-|+++.-+.-|.-++.+++.|+++++||+|+.+ ++++
T Consensus 106 ~S~gtD-k~v~~wD~~tG~~--------~rk----~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~--~~~t 170 (338)
T KOG0265|consen 106 LSCGTD-KTVRGWDAETGKR--------IRK----HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE--AIKT 170 (338)
T ss_pred EEecCC-ceEEEEeccccee--------eeh----hccccceeeecCccccCCeEEEecCCCceEEEEeecccc--hhhc
Confidence 777777 9999999954421 222 278999999998776777688899999999999999865 5655
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
+ ...-+++++.|..++..+++|+-|+.|++||+|....++.+.+|.+. |+.+..+++|.++.+....... .+
T Consensus 171 ~-~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~Dt----It~lsls~~gs~llsnsMd~tv---rv 242 (338)
T KOG0265|consen 171 F-ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADT----ITGLSLSRYGSFLLSNSMDNTV---RV 242 (338)
T ss_pred c-ccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCc----eeeEEeccCCCccccccccceE---EE
Confidence 5 23578999999999999999999999999999999999999999988 9999999999888753322221 22
Q ss_pred eEEE-eCCCCCeEEEEEecCCceEEEEeeccceeeec--CCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcE
Q 037120 332 HSID-LDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVH--CPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGI 408 (489)
Q Consensus 332 ~~~~-~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i 408 (489)
+.+. |.|.. +.+.++.|+..... ...+.|++. +.++..|+.|..+
T Consensus 243 wd~rp~~p~~-------------R~v~if~g~~hnfeknlL~cswsp~-------------------~~~i~ags~dr~v 290 (338)
T KOG0265|consen 243 WDVRPFAPSQ-------------RCVKIFQGHIHNFEKNLLKCSWSPN-------------------GTKITAGSADRFV 290 (338)
T ss_pred EEecccCCCC-------------ceEEEeecchhhhhhhcceeeccCC-------------------CCccccccccceE
Confidence 2222 22222 23444444433221 122244444 6788899999999
Q ss_pred EEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEE
Q 037120 409 HLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLV 474 (489)
Q Consensus 409 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v 474 (489)
++||..+. ..+..+. ||.+.|++++|||..++|.+++.|.+|.+
T Consensus 291 yvwd~~~r----------~~lyklp------------Gh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 291 YVWDTTSR----------RILYKLP------------GHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred EEeecccc----------cEEEEcC------------CcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 99999998 8888888 99999999999999999999999999876
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-35 Score=259.64 Aligned_cols=270 Identities=16% Similarity=0.197 Sum_probs=211.2
Q ss_pred cccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEE
Q 037120 148 HLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRL 227 (489)
Q Consensus 148 ~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 227 (489)
+.||... |.|++|+|++. .|++|+.| .++++||+... ....+..+|...|.+++|+|||+ .|
T Consensus 111 ~~GH~e~---Vl~~~fsp~g~-~l~tGsGD-~TvR~WD~~Te------------Tp~~t~KgH~~WVlcvawsPDgk-~i 172 (480)
T KOG0271|consen 111 IAGHGEA---VLSVQFSPTGS-RLVTGSGD-TTVRLWDLDTE------------TPLFTCKGHKNWVLCVAWSPDGK-KI 172 (480)
T ss_pred cCCCCCc---EEEEEecCCCc-eEEecCCC-ceEEeeccCCC------------CcceeecCCccEEEEEEECCCcc-hh
Confidence 3566666 99999999886 88888888 99999999432 12333489999999999999999 99
Q ss_pred EEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEee-----cCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCC
Q 037120 228 IASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHA-----ENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCH 302 (489)
Q Consensus 228 ~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p-----~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~ 302 (489)
++|+.||+|++||..+++. ..+.+.+|...|++++|.| ..+++++++.||.|+|||+..+.++..+.+|..+
T Consensus 173 ASG~~dg~I~lwdpktg~~-~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~-- 249 (480)
T KOG0271|consen 173 ASGSKDGSIRLWDPKTGQQ-IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS-- 249 (480)
T ss_pred hccccCCeEEEecCCCCCc-ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc--
Confidence 9999999999999998864 3456779999999999976 6678999999999999999999999999999977
Q ss_pred CCeeEEEeCCCCcce---------------eeccccceeeccceeEEEeC-----------CCCCe--------------
Q 037120 303 LPLTSLKLASMLEKI---------------GTLKAQSKIVSQEIHSIDLD-----------PSCSY-------------- 342 (489)
Q Consensus 303 ~~v~~l~~~~~~~~i---------------~~~~~~~~~~~~~i~~~~~~-----------p~~~~-------------- 342 (489)
|++++|-.+|-.. +.+......|...|..++++ |.+.+
T Consensus 250 --VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r 327 (480)
T KOG0271|consen 250 --VTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER 327 (480)
T ss_pred --eEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence 9999998766433 11223445566677777765 22222
Q ss_pred -----------EEEEEecCC---ce-----EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeec
Q 037120 343 -----------QLAFHLDDG---WS-----GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSS 403 (489)
Q Consensus 343 -----------~~~~~~~~~---w~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 403 (489)
++.++-|.+ |. +.+..+.||..-+ ..+.|+|+ ++|++++|
T Consensus 328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV--------------------n~V~fSPd-~r~IASaS 386 (480)
T KOG0271|consen 328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV--------------------NHVSFSPD-GRYIASAS 386 (480)
T ss_pred HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe--------------------eeEEECCC-ccEEEEee
Confidence 333333333 42 2233444544333 33444444 78999999
Q ss_pred CCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccccccc
Q 037120 404 SDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCTS 483 (489)
Q Consensus 404 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~~ 483 (489)
-|..|++||..++ +.+..+. ||-+.|..|+|+.+...+++||.|.++.||..+.+.+.
T Consensus 387 FDkSVkLW~g~tG----------k~lasfR------------GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 387 FDKSVKLWDGRTG----------KFLASFR------------GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK 444 (480)
T ss_pred cccceeeeeCCCc----------chhhhhh------------hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeec
Confidence 9999999999999 8888877 99999999999999999999999999999988877653
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.3e-35 Score=281.88 Aligned_cols=261 Identities=13% Similarity=0.180 Sum_probs=217.6
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcc--cccC---CCCC---------CCC---CcccccccccCCC
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLY--YQCN---GTLP---------GVG---LKEDQSKHLLHIP 153 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~--~~~~---~~~~---------~~g---~~~~~~~~~~h~~ 153 (489)
++....++++|..|++|+.+||.|-.|..|++|.+...+ ..+. .... ... .......+.+|.+
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 477788899999999999999999999999999988421 1000 0000 000 0001122567888
Q ss_pred CCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC
Q 037120 154 LPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH 233 (489)
Q Consensus 154 ~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d 233 (489)
+ |..+.|+|+.. +|+++++| ++||+|.+.. ......+.||..+|+++.|+|.|- +|+|+|.|
T Consensus 453 P---Vyg~sFsPd~r-fLlScSED-~svRLWsl~t------------~s~~V~y~GH~~PVwdV~F~P~Gy-YFatas~D 514 (707)
T KOG0263|consen 453 P---VYGCSFSPDRR-FLLSCSED-SSVRLWSLDT------------WSCLVIYKGHLAPVWDVQFAPRGY-YFATASHD 514 (707)
T ss_pred c---eeeeeeccccc-ceeeccCC-cceeeeeccc------------ceeEEEecCCCcceeeEEecCCce-EEEecCCC
Confidence 8 67799999985 88888888 9999999932 223333489999999999999998 99999999
Q ss_pred CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCC
Q 037120 234 GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 234 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 313 (489)
++.++|...... .++.+.+|.+.|.|+.|+|+..|+++||.|.+||+||+.+|..++.|.+|... |++|+|+|+
T Consensus 515 ~tArLWs~d~~~--PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~----V~al~~Sp~ 588 (707)
T KOG0263|consen 515 QTARLWSTDHNK--PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGP----VTALAFSPC 588 (707)
T ss_pred ceeeeeecccCC--chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCc----eEEEEEcCC
Confidence 999999988755 67888999999999999999999999999999999999999999999999876 888876653
Q ss_pred CcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeec
Q 037120 314 LEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLS 393 (489)
Q Consensus 314 ~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (489)
T Consensus 589 -------------------------------------------------------------------------------- 588 (707)
T KOG0263|consen 589 -------------------------------------------------------------------------------- 588 (707)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeE
Q 037120 394 TNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLL 473 (489)
Q Consensus 394 ~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~ 473 (489)
|.|+++|++|+.|++||+.++ +.+..+. +|++.|.++.|+.+|..||+||.|.+|+
T Consensus 589 --Gr~LaSg~ed~~I~iWDl~~~----------~~v~~l~------------~Ht~ti~SlsFS~dg~vLasgg~DnsV~ 644 (707)
T KOG0263|consen 589 --GRYLASGDEDGLIKIWDLANG----------SLVKQLK------------GHTGTIYSLSFSRDGNVLASGGADNSVR 644 (707)
T ss_pred --CceEeecccCCcEEEEEcCCC----------cchhhhh------------cccCceeEEEEecCCCEEEecCCCCeEE
Confidence 567888999999999999999 8888877 9999999999999999999999999999
Q ss_pred EEeccc
Q 037120 474 VVSQKQ 479 (489)
Q Consensus 474 v~~~~~ 479 (489)
||...+
T Consensus 645 lWD~~~ 650 (707)
T KOG0263|consen 645 LWDLTK 650 (707)
T ss_pred EEEchh
Confidence 997654
No 7
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.1e-36 Score=263.86 Aligned_cols=281 Identities=17% Similarity=0.271 Sum_probs=222.8
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
..+.+|..+.|.|+|+.|++|+..|.+.+|+... +..+.-...|.+. |+++.|++++. .+++
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~--------------fnFEtilQaHDs~---Vr~m~ws~~g~-wmiS 155 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS--------------FNFETILQAHDSP---VRTMKWSHNGT-WMIS 155 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCce--------------eeHHHHhhhhccc---ceeEEEccCCC-EEEE
Confidence 3445699999999999999999999999999865 2223333557666 99999999986 7888
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST 253 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 253 (489)
|..+ |.|++|+.+.. .++... ..|...|++++|+|.+. .|++|+.||+|+|||.+..+.. ..+.
T Consensus 156 gD~g-G~iKyWqpnmn------nVk~~~------ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee--~vL~ 219 (464)
T KOG0284|consen 156 GDKG-GMIKYWQPNMN------NVKIIQ------AHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEE--RVLR 219 (464)
T ss_pred cCCC-ceEEecccchh------hhHHhh------HhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchh--heec
Confidence 8887 99999998432 111122 33558999999999887 9999999999999999987633 3457
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeE
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHS 333 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~ 333 (489)
+|.-.|.|++|+|...++++||.|..|++||.++++++.++..|+.. |.++.|++++.++.+..
T Consensus 220 GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKnt----Vl~~~f~~n~N~Llt~s------------ 283 (464)
T KOG0284|consen 220 GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNT----VLAVKFNPNGNWLLTGS------------ 283 (464)
T ss_pred cCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccce----EEEEEEcCCCCeeEEcc------------
Confidence 99999999999999999999999999999999999999999999988 88888888776665432
Q ss_pred EEeCCCCCeEEEEEecCCceEEEEee--------ccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCC
Q 037120 334 IDLDPSCSYQLAFHLDDGWSGVLDVY--------NSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSD 405 (489)
Q Consensus 334 ~~~~p~~~~~~~~~~~~~w~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d 405 (489)
.|.. .+++++. .+|. ..+..+.|+|-...++++|+.|
T Consensus 284 --------------kD~~-~kv~DiR~mkEl~~~r~Hk--------------------kdv~~~~WhP~~~~lftsgg~D 328 (464)
T KOG0284|consen 284 --------------KDQS-CKVFDIRTMKELFTYRGHK--------------------KDVTSLTWHPLNESLFTSGGSD 328 (464)
T ss_pred --------------CCce-EEEEehhHhHHHHHhhcch--------------------hhheeeccccccccceeeccCC
Confidence 2211 0122221 2222 2234567888889999999999
Q ss_pred CcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 406 HGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 406 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
|.|..|.+... +.+..++ ..|...|.+++|||-|.+||+|+.|.++++|.+-+.
T Consensus 329 gsvvh~~v~~~----------~p~~~i~-----------~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 329 GSVVHWVVGLE----------EPLGEIP-----------PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred CceEEEecccc----------ccccCCC-----------cccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 99999999855 4454444 279999999999999999999999999999987654
No 8
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.8e-34 Score=249.26 Aligned_cols=298 Identities=14% Similarity=0.240 Sum_probs=224.7
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
..|..-|+|+++.|...+|++|+.|++|+|||+.++.... .+.||... |..|++++-.+ .++
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl--------------tltGhi~~---vr~vavS~rHp-YlF 209 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL--------------TLTGHIET---VRGVAVSKRHP-YLF 209 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE--------------eecchhhe---eeeeeecccCc-eEE
Confidence 4444559999999999999999999999999999955544 23566666 77799999887 566
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeec
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELS 252 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 252 (489)
+++.| +.|+-||+... ++ ++.+ .||-..|.+++.+|... .|+||+.|.+++|||+|+.. .+..+
T Consensus 210 s~ged-k~VKCwDLe~n-----kv---IR~Y----hGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~--~V~~l 273 (460)
T KOG0285|consen 210 SAGED-KQVKCWDLEYN-----KV---IRHY----HGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRA--SVHVL 273 (460)
T ss_pred EecCC-CeeEEEechhh-----hh---HHHh----ccccceeEEEeccccce-eEEecCCcceEEEeeecccc--eEEEe
Confidence 67767 99999999332 22 3344 89999999999999999 99999999999999999965 56678
Q ss_pred cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeecccee
Q 037120 253 TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIH 332 (489)
Q Consensus 253 ~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~ 332 (489)
.+|..+|.++.+.|.+..+++|+.|++|++||++.|+.+.++..|... |++++.+|....+++..... |.
T Consensus 274 ~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkks----vral~lhP~e~~fASas~dn------ik 343 (460)
T KOG0285|consen 274 SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKS----VRALCLHPKENLFASASPDN------IK 343 (460)
T ss_pred cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccce----eeEEecCCchhhhhccCCcc------ce
Confidence 899999999999999999999999999999999999999999999988 99999999988887632111 11
Q ss_pred EEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEe
Q 037120 333 SIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLD 412 (489)
Q Consensus 333 ~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd 412 (489)
...+ |.+.++.- ..+|...+.+. ....+.++++|+++|.|.+||
T Consensus 344 ~w~~-p~g~f~~n-------------lsgh~~iintl----------------------~~nsD~v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 344 QWKL-PEGEFLQN-------------LSGHNAIINTL----------------------SVNSDGVLVSGGDNGSIMFWD 387 (460)
T ss_pred eccC-Cccchhhc-------------cccccceeeee----------------------eeccCceEEEcCCceEEEEEe
Confidence 1111 33333221 11111111110 001155788899999999999
Q ss_pred ccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccccccc
Q 037120 413 FFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCTSD 484 (489)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~~~ 484 (489)
..++ ...+.... ...+.-+.-+..|++.+|...+..|++|..|.+|.+|-+......+
T Consensus 388 wksg----------~nyQ~~~t----~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~aT~E 445 (460)
T KOG0285|consen 388 WKSG----------HNYQRGQT----IVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHATEE 445 (460)
T ss_pred cCcC----------cccccccc----cccCCccccccceeEEeecccCceEEeccCCcceEEEecccccCcc
Confidence 9988 33332210 0000111345679999999999999999999999999887665544
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1e-33 Score=238.97 Aligned_cols=252 Identities=16% Similarity=0.213 Sum_probs=196.1
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
|..|...|..++.++||++.++++.|+++++||+.+++ +...+.+|... |.+++|++++. .+
T Consensus 59 ~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~--------------~t~~f~GH~~d---Vlsva~s~dn~-qi 120 (315)
T KOG0279|consen 59 LTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE--------------STRRFVGHTKD---VLSVAFSTDNR-QI 120 (315)
T ss_pred eeccceEecceEEccCCceEEeccccceEEEEEecCCc--------------EEEEEEecCCc---eEEEEecCCCc-ee
Confidence 66677789999999999999999999999999999843 33345778877 99999999985 89
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecC--CCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAV--NTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
++|+.| ++|++|++- ....+.... ..|++.|+++.|+|. .+ .|++++.|++|++||+++-+ ..
T Consensus 121 vSGSrD-kTiklwnt~-----g~ck~t~~~------~~~~~WVscvrfsP~~~~p-~Ivs~s~DktvKvWnl~~~~--l~ 185 (315)
T KOG0279|consen 121 VSGSRD-KTIKLWNTL-----GVCKYTIHE------DSHREWVSCVRFSPNESNP-IIVSASWDKTVKVWNLRNCQ--LR 185 (315)
T ss_pred ecCCCc-ceeeeeeec-----ccEEEEEec------CCCcCcEEEEEEcCCCCCc-EEEEccCCceEEEEccCCcc--hh
Confidence 999999 999999992 112222111 345889999999999 55 99999999999999999876 55
Q ss_pred eeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeecc
Q 037120 250 ELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQ 329 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~ 329 (489)
..+.+|++.++.++++|||.++++|+.||.+.+||++.++.++.+.. ... |.+++|+|.
T Consensus 186 ~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a-~~~----v~sl~fspn---------------- 244 (315)
T KOG0279|consen 186 TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA-FDI----VNSLCFSPN---------------- 244 (315)
T ss_pred hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC-CCe----EeeEEecCC----------------
Confidence 66779999999999999999999999999999999999998777764 333 566655543
Q ss_pred ceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEE
Q 037120 330 EIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIH 409 (489)
Q Consensus 330 ~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~ 409 (489)
. |.+....+..|+
T Consensus 245 ----------r---------------------------------------------------------ywL~~at~~sIk 257 (315)
T KOG0279|consen 245 ----------R---------------------------------------------------------YWLCAATATSIK 257 (315)
T ss_pred ----------c---------------------------------------------------------eeEeeccCCceE
Confidence 1 122222445699
Q ss_pred EEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 410 LLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 410 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
|||+.++ ..+..+......+ ....-....+++||+++|..+.+|-.|+.|.||-.
T Consensus 258 Iwdl~~~----------~~v~~l~~d~~g~---s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 258 IWDLESK----------AVVEELKLDGIGP---SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred EEeccch----------hhhhhcccccccc---ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 9999988 6666655221111 00012334689999999999999999999999864
No 10
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-35 Score=262.77 Aligned_cols=237 Identities=16% Similarity=0.211 Sum_probs=195.9
Q ss_pred ccccCCCceeEEEECCC--CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCC
Q 037120 91 RRSFGKPGISALDFDCK--GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQ 168 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~--g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~ 168 (489)
.|..|...|.++.|+|. +..||+|+.||++++|++++..... .+.+|... |..++|+|+|+
T Consensus 212 ~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~--------------~l~gH~~R---Vs~VafHPsG~ 274 (459)
T KOG0272|consen 212 TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ--------------DLEGHLAR---VSRVAFHPSGK 274 (459)
T ss_pred EEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh--------------hhhcchhh---heeeeecCCCc
Confidence 36677888999999998 6789999999999999999843332 34566666 88899999996
Q ss_pred CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 169 DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 169 ~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
+|.+++.| .+-++||+++... . ....||...|.+|+|++||. +++||+.|..-+|||+|++. +
T Consensus 275 -~L~TasfD-~tWRlWD~~tk~E----l--------L~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr--~ 337 (459)
T KOG0272|consen 275 -FLGTASFD-STWRLWDLETKSE----L--------LLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGR--C 337 (459)
T ss_pred -eeeecccc-cchhhcccccchh----h--------HhhcccccccceeEecCCCc-eeeccCccchhheeecccCc--E
Confidence 88899998 9999999954321 1 11288999999999999999 99999999999999999998 8
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCC-Ccceeeccccceee
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASM-LEKIGTLKAQSKIV 327 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~i~~~~~~~~~~ 327 (489)
+..+.+|..+|.+++|+|+|-.+++||.|++++|||+|..+.++++.+|... |+.|+|+|+ |.++
T Consensus 338 im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl----VS~Vk~~p~~g~fL---------- 403 (459)
T KOG0272|consen 338 IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL----VSQVKYSPQEGYFL---------- 403 (459)
T ss_pred EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch----hhheEecccCCeEE----------
Confidence 8889999999999999999999999999999999999999999999999988 888888873 3333
Q ss_pred ccceeEEEeCCCCCeEEEEEecCC---ce----EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEE
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDG---WS----GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAV 400 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~---w~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 400 (489)
++++.|+. |+ ..++...||..++.+. ..+.+ +.+++
T Consensus 404 ----------------~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~--Dis~d-------------------~~~i~ 446 (459)
T KOG0272|consen 404 ----------------VTASYDNTVKIWSTRTWSPLKSLAGHEGKVISL--DISPD-------------------SQAIA 446 (459)
T ss_pred ----------------EEcccCcceeeecCCCcccchhhcCCccceEEE--EeccC-------------------CceEE
Confidence 33333433 32 2566677888777665 44455 88999
Q ss_pred eecCCCcEEEEe
Q 037120 401 GSSSDHGIHLLD 412 (489)
Q Consensus 401 sgs~d~~i~vwd 412 (489)
+++.|++|++|.
T Consensus 447 t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 447 TSSFDRTIKLWR 458 (459)
T ss_pred EeccCceeeecc
Confidence 999999999995
No 11
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3e-33 Score=274.39 Aligned_cols=285 Identities=20% Similarity=0.309 Sum_probs=218.9
Q ss_pred CCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 96 KPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
...|.|+.|+++|++|++++.|+.+++|+...... . ....+.+|... |.+++|+|++. .+++++
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~-----------~~~~l~~h~~~---v~~~~fs~d~~-~l~s~s 222 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-N-----------LLRELSGHTRG---VSDVAFSPDGS-YLLSGS 222 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-h-----------hhccccccccc---eeeeEECCCCc-EEEEec
Confidence 56799999999999999999999999999966331 0 11111445555 89999999987 888888
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCC
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
.| ++|+|||+... .....++.+|...|++++|+|+++ ++++|+.|++|+|||+++++ +.+.+.+|
T Consensus 223 ~D-~tiriwd~~~~-----------~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~--~~~~l~~h 287 (456)
T KOG0266|consen 223 DD-KTLRIWDLKDD-----------GRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGE--CVRKLKGH 287 (456)
T ss_pred CC-ceEEEeeccCC-----------CeEEEEecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCe--EEEeeecc
Confidence 88 99999999211 112333489999999999999996 99999999999999999977 88889999
Q ss_pred CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCc--ccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeE
Q 037120 256 HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR--TSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHS 333 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~ 333 (489)
.+.|++++|++++.++++++.|+.|++||+.++. ++..+..+... +++++++|+|++.
T Consensus 288 s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~fsp~~~------------------ 347 (456)
T KOG0266|consen 288 SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS--APVTSVQFSPNGK------------------ 347 (456)
T ss_pred CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC--CceeEEEECCCCc------------------
Confidence 9999999999999999999999999999999988 45666654433 1355555555554
Q ss_pred EEeCCCCCeEEEEEecCC---ce----EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCC
Q 037120 334 IDLDPSCSYQLAFHLDDG---WS----GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDH 406 (489)
Q Consensus 334 ~~~~p~~~~~~~~~~~~~---w~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~ 406 (489)
+++....++. |. .+...+.+|.....|+..... ..++.++++|+.|+
T Consensus 348 --------~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~i~sg~~d~ 401 (456)
T KOG0266|consen 348 --------YLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTL------------------STGGKLIYSGSEDG 401 (456)
T ss_pred --------EEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccc------------------cCCCCeEEEEeCCc
Confidence 4444444433 21 122333333333222211111 22488999999999
Q ss_pred cEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccC-CCceEEEEeeCCCCeEEecc--CcceeEEEeccc
Q 037120 407 GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPL-SEGVTACVTHPLNNTIVAGT--KNSSLLVVSQKQ 479 (489)
Q Consensus 407 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~va~~p~~~~i~sgs--~dg~i~v~~~~~ 479 (489)
.|++||+.++ ..+..++ +| ...|..+++||..+++++++ .|+.+.+|..+.
T Consensus 402 ~v~~~~~~s~----------~~~~~l~------------~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~~ 455 (456)
T KOG0266|consen 402 SVYVWDSSSG----------GILQRLE------------GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYDF 455 (456)
T ss_pred eEEEEeCCcc----------chhhhhc------------CCCCCceeccccCCCcCeeeecCcCCCceEEEecCCC
Confidence 9999999998 8888888 99 89999999999999999999 788899997653
No 12
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.5e-34 Score=261.32 Aligned_cols=290 Identities=14% Similarity=0.144 Sum_probs=227.6
Q ss_pred ccccCCCceeEEEECC-CCcEEEEEecCCeEEEEeCCC-cccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCC
Q 037120 91 RRSFGKPGISALDFDC-KGIYLVSATRSGCLTVHDFES-LYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQ 168 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~-~g~~la~g~~dg~i~vwd~~~-~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~ 168 (489)
.+..|..+|+++.|.| .+.+|++|+.|+.|+||++-. ..++. + +.+|... |.+++|++++.
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr--------t------f~gH~k~---Vrd~~~s~~g~ 271 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR--------T------FKGHRKP---VRDASFNNCGT 271 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh--------h------hhcchhh---hhhhhccccCC
Confidence 4778899999999999 899999999999999999876 44444 2 3566666 88899999997
Q ss_pred CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 169 DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 169 ~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
.+++++.| +.|++||+.++ .++.... -...++++.|+|++++.|++|+.|+.|+.||+|+++ +
T Consensus 272 -~fLS~sfD-~~lKlwDtETG-----~~~~~f~--------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k--v 334 (503)
T KOG0282|consen 272 -SFLSASFD-RFLKLWDTETG-----QVLSRFH--------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK--V 334 (503)
T ss_pred -eeeeeecc-eeeeeeccccc-----eEEEEEe--------cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH--H
Confidence 66667777 99999999443 3333222 123788999999998799999999999999999998 7
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee-cCCccCCCCeeEEEeCCCCcceeeccccceee
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH-NHKEVCHLPLTSLKLASMLEKIGTLKAQSKIV 327 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~-~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~ 327 (489)
++.+..|-+.|..+.|-++|+.+++++.|++++||+.+.+-.++.+. .+... ..++..+|.+..++.-
T Consensus 335 vqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hs----mP~~~~~P~~~~~~aQ------- 403 (503)
T KOG0282|consen 335 VQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHT----MPCLTLHPNGKWFAAQ------- 403 (503)
T ss_pred HHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhcc----CcceecCCCCCeehhh-------
Confidence 88888999999999999999999999999999999999876644332 12222 6778888887766421
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCce-EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCC
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWS-GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDH 406 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~ 406 (489)
..+.+++.+....... ...+.+.||...-+.....|+++ +.+|++|+.||
T Consensus 404 ----------s~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD-------------------G~~l~SGdsdG 454 (503)
T KOG0282|consen 404 ----------SMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD-------------------GRTLCSGDSDG 454 (503)
T ss_pred ----------ccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC-------------------CCeEEeecCCc
Confidence 1123344443322221 23445667777666655566666 88999999999
Q ss_pred cEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCC-CeEEeccCcceeEEEe
Q 037120 407 GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLN-NTIVAGTKNSSLLVVS 476 (489)
Q Consensus 407 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~-~~i~sgs~dg~i~v~~ 476 (489)
.+++||..+. +++..++ .|.+++..+.|||.. ..+||||+||.|.+|.
T Consensus 455 ~v~~wdwkt~----------kl~~~lk------------ah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 455 KVNFWDWKTT----------KLVSKLK------------AHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cEEEeechhh----------hhhhccc------------cCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999 8888888 999999999999988 4899999999999983
No 13
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-34 Score=253.54 Aligned_cols=288 Identities=13% Similarity=0.180 Sum_probs=219.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|.-+.||++|+|||+++.|.+..+|++...... .-...+.+|... |..+.|+||..+++
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~-----------kl~~tlvgh~~~---V~yi~wSPDdryLl 285 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHF-----------KLKKTLVGHSQP---VSYIMWSPDDRYLL 285 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcce-----------eeeeeeecccCc---eEEEEECCCCCeEE
Confidence 5667788999999999999999999999999988653221 111224566666 88899999998777
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
+++. +..+.+||+.++... .... .+|...+.+++|.|||. .|++|+.|+++..||+.......++-
T Consensus 286 aCg~--~e~~~lwDv~tgd~~-----~~y~------~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~~~~W~g 351 (519)
T KOG0293|consen 286 ACGF--DEVLSLWDVDTGDLR-----HLYP------SGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNILGNWEG 351 (519)
T ss_pred ecCc--hHheeeccCCcchhh-----hhcc------cCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcchhhcccc
Confidence 7777 358999999544211 1111 34567899999999999 89999999999999998654333332
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
.. ...|.+++..+||+++++.+.|..|++|+..+......+..+ +||+++.++.+++++.
T Consensus 352 vr--~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~-----~~its~~iS~d~k~~L------------- 411 (519)
T KOG0293|consen 352 VR--DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE-----QPITSFSISKDGKLAL------------- 411 (519)
T ss_pred cc--cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc-----CceeEEEEcCCCcEEE-------------
Confidence 22 345899999999999999999999999998875443333322 3477777776665543
Q ss_pred eEEEeCCCCCeEEEEEecCC---ce----EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecC
Q 037120 332 HSIDLDPSCSYQLAFHLDDG---WS----GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSS 404 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~---w~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~ 404 (489)
+.-.+.. |. .++..|.||...-+-+..+|...+ ..++++||+
T Consensus 412 -------------vnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~------------------~~fiaSGSE 460 (519)
T KOG0293|consen 412 -------------VNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGN------------------DKFIASGSE 460 (519)
T ss_pred -------------EEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCC------------------cceEEecCC
Confidence 2222222 32 344566777777666666776663 689999999
Q ss_pred CCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC-eEEeccCcceeEEEecccc
Q 037120 405 DHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN-TIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 405 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~-~i~sgs~dg~i~v~~~~~~ 480 (489)
|+.|+||+..++ +.+.++. ||...|++|+|+|..+ ++||+|.||+|++|..++.
T Consensus 461 D~kvyIWhr~sg----------kll~~Ls------------GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 461 DSKVYIWHRISG----------KLLAVLS------------GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CceEEEEEccCC----------ceeEeec------------CCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999999999999 8999999 9999999999999885 9999999999999998754
No 14
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.8e-32 Score=227.48 Aligned_cols=292 Identities=14% Similarity=0.147 Sum_probs=211.6
Q ss_pred cccCCCceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..+...|..++|+|- |..||+|+.|..|+||+........ ...... -+|+.. |.+++|+|.++ +
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~---------ck~vld-~~hkrs---VRsvAwsp~g~-~ 75 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWT---------CKTVLD-DGHKRS---VRSVAWSPHGR-Y 75 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEE---------EEEecc-ccchhe---eeeeeecCCCc-E
Confidence 4445567999999999 9999999999999999998411111 111110 246666 99999999997 9
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc-Cce
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL-PSL 249 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~ 249 (489)
|++++.| .++.||.-... ...++.++.||...|.+++|+++|. +|++|+.|..|-||.+..+.. .|.
T Consensus 76 La~aSFD-~t~~Iw~k~~~----------efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~ 143 (312)
T KOG0645|consen 76 LASASFD-ATVVIWKKEDG----------EFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECI 143 (312)
T ss_pred EEEeecc-ceEEEeecCCC----------ceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEE
Confidence 9999999 99999987322 1223556699999999999999999 999999999999999885433 377
Q ss_pred eeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC---CcccceeecCCccCCCCeeEEEeCCCCcceeecccccee
Q 037120 250 ELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG---GRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKI 326 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~---~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~ 326 (489)
..+..|...|.-+.|+|...+|++++.|++|++|+-.. ..++.++.+|... |.+++|++.|..+++
T Consensus 144 aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~T----VW~~~F~~~G~rl~s------- 212 (312)
T KOG0645|consen 144 AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENT----VWSLAFDNIGSRLVS------- 212 (312)
T ss_pred eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccce----EEEEEecCCCceEEE-------
Confidence 78889999999999999999999999999999998763 3457888888766 777777666644432
Q ss_pred eccceeEEEeCCCCCeEEEEEecCCceEEEEee----ccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEee
Q 037120 327 VSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVY----NSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGS 402 (489)
Q Consensus 327 ~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 402 (489)
+ .++++..++..+ ..|...+|.+ .|. ...++++
T Consensus 213 -------------------~-sdD~tv~Iw~~~~~~~~~~sr~~Y~v--------------------~W~---~~~IaS~ 249 (312)
T KOG0645|consen 213 -------------------C-SDDGTVSIWRLYTDLSGMHSRALYDV--------------------PWD---NGVIASG 249 (312)
T ss_pred -------------------e-cCCcceEeeeeccCcchhcccceEee--------------------eec---ccceEec
Confidence 2 233333333322 1111222222 222 3468889
Q ss_pred cCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCC-CCeEEeccCcceeEEEecc
Q 037120 403 SSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPL-NNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 403 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~-~~~i~sgs~dg~i~v~~~~ 478 (489)
+.|+.|+|+--...+..+ .++.....-. .|...|++|+|.|. .+.|++||.||.+++|..+
T Consensus 250 ggD~~i~lf~~s~~~d~p---~~~l~~~~~~------------aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 250 GGDDAIRLFKESDSPDEP---SWNLLAKKEG------------AHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCEEEEEEecCCCCCc---hHHHHHhhhc------------ccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 999999999776441100 0001111111 69999999999995 6799999999999999865
No 15
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.9e-34 Score=245.03 Aligned_cols=380 Identities=17% Similarity=0.195 Sum_probs=253.3
Q ss_pred ccccCCCCCCCCcCcCccCcccceeeeecCcccccccchHHHHHHhhhh---hcccccccccccCccccccccccccccc
Q 037120 4 YLVSRESVPENPKRCNSSNRWKRSVVELNGRFESKYRHDLSALLMQSYS---QIGAFPHLYHVDRVLCPTHEGIVNSQRS 80 (489)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 80 (489)
|+.|.+..+...|.+ |-..+++.+.|....-...++++++-|++. ..|..|---.++-++-..-+...-.++
T Consensus 125 YFDp~EaY~dssKEk----rRa~IAQ~ls~EV~VVppSRLlaLlGQaLKWQqHQGLLPPGt~iDLFRGkAA~K~~~Ee~- 199 (508)
T KOG0275|consen 125 YFDPREAYGDSSKEK----RRAVIAQALSGEVHVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKAAMKDQEEER- 199 (508)
T ss_pred ccChhhhcCcchHHH----HHHHHHHHhcCceEEcChHHHHHHHHHHhhhHhhcCCCCCCceeeeccchhhhhhhHhhh-
Confidence 445555554333222 223455667777777777788888888764 123332222222111111010000000
Q ss_pred cceeeeccccccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeE
Q 037120 81 RAGDVAMIDHRRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDA 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~ 160 (489)
-...+..+.-.....-+-|..|||||+||++|+.||.|.|||+.+++..... ....+-.+..+... |.|
T Consensus 200 --~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDL------kYQAqd~fMMmd~a---Vlc 268 (508)
T KOG0275|consen 200 --YPTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDL------KYQAQDNFMMMDDA---VLC 268 (508)
T ss_pred --chHHhhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhh------hhhhhcceeecccc---eEE
Confidence 0000111111223344889999999999999999999999999986554432 23444445556666 999
Q ss_pred EEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 037120 161 VRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD 240 (489)
Q Consensus 161 v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd 240 (489)
+.|+.|.+ ++++|+.| |.|+||.+..+ ..+.... ..|+..|+++.|+.|+. .+++++.|.++++--
T Consensus 269 i~FSRDsE-MlAsGsqD-GkIKvWri~tG-----~ClRrFd------rAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHG 334 (508)
T KOG0275|consen 269 ISFSRDSE-MLASGSQD-GKIKVWRIETG-----QCLRRFD------RAHTKGVTCLSFSRDNS-QILSASFDQTVRIHG 334 (508)
T ss_pred EeecccHH-HhhccCcC-CcEEEEEEecc-----hHHHHhh------hhhccCeeEEEEccCcc-hhhcccccceEEEec
Confidence 99999975 99999999 99999999443 3333333 46999999999999998 999999999999999
Q ss_pred CCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeec
Q 037120 241 RRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTL 320 (489)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~ 320 (489)
+.+++ +++.+.+|++.|+...|.++|.+++++++||+|++|+..+.+|+.+|+..... .+|.++-.-|...
T Consensus 335 lKSGK--~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d--~~vnsv~~~PKnp----- 405 (508)
T KOG0275|consen 335 LKSGK--CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTD--YPVNSVILLPKNP----- 405 (508)
T ss_pred cccch--hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCc--ccceeEEEcCCCC-----
Confidence 99998 89999999999999999999999999999999999999999999888754322 3466665554331
Q ss_pred cccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEE
Q 037120 321 KAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAV 400 (489)
Q Consensus 321 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 400 (489)
..+++|...++ .++-...|.+.+. |+.......+ -..+.++..+.++.
T Consensus 406 --------------------eh~iVCNrsnt--v~imn~qGQvVrs------fsSGkREgGd----Fi~~~lSpkGewiY 453 (508)
T KOG0275|consen 406 --------------------EHFIVCNRSNT--VYIMNMQGQVVRS------FSSGKREGGD----FINAILSPKGEWIY 453 (508)
T ss_pred --------------------ceEEEEcCCCe--EEEEeccceEEee------eccCCccCCc----eEEEEecCCCcEEE
Confidence 11222221111 0111112222221 1111100000 00111222277888
Q ss_pred eecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 401 GSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 401 sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
..++|+.++.+.+.++ .....+. -|+..|..++-||..+.||+-++||.+.+|-
T Consensus 454 cigED~vlYCF~~~sG----------~LE~tl~------------VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 454 CIGEDGVLYCFSVLSG----------KLERTLP------------VHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEccCcEEEEEEeecC----------ceeeeee------------cccccccccccCcccchhhhhcccchhhhcC
Confidence 8889999999999999 6666666 7889999999999999999999999999994
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1e-31 Score=226.99 Aligned_cols=254 Identities=17% Similarity=0.205 Sum_probs=205.3
Q ss_pred ccccCCCceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCC
Q 037120 91 RRSFGKPGISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~ 169 (489)
++..|...|..++..+. -+.|.+++.|.++.+|++...... .-.+...+.||... |..+..+++++
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~---------~G~~~r~~~GHsH~---v~dv~~s~dg~- 76 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK---------YGVPVRRLTGHSHF---VSDVVLSSDGN- 76 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc---------cCceeeeeeccceE---ecceEEccCCc-
Confidence 46667777999999987 578899999999999999874221 22344556778777 88899999986
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
++++++.| +++++||+..+ + +.+. |.+|...|.+++|++|+. .+++|+.|.+|++|++.... ..
T Consensus 77 ~alS~swD-~~lrlWDl~~g--~------~t~~----f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~c--k~ 140 (315)
T KOG0279|consen 77 FALSASWD-GTLRLWDLATG--E------STRR----FVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVC--KY 140 (315)
T ss_pred eEEecccc-ceEEEEEecCC--c------EEEE----EEecCCceEEEEecCCCc-eeecCCCcceeeeeeecccE--EE
Confidence 77888888 99999999433 1 1233 489999999999999999 99999999999999998653 22
Q ss_pred eecc-CCCCceeEEEEeec--CCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeecccccee
Q 037120 250 ELST-GSHGTLNSIQLHAE--NQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKI 326 (489)
Q Consensus 250 ~~~~-~h~~~v~~~~~~p~--~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~ 326 (489)
.... .+++.|+|+.|+|+ ..+++++|.|++|++||+++.+....+.+|.+. ++.+.++|||
T Consensus 141 t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~----v~t~~vSpDG------------ 204 (315)
T KOG0279|consen 141 TIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGY----VNTVTVSPDG------------ 204 (315)
T ss_pred EEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccccccc----EEEEEECCCC------------
Confidence 2222 33789999999998 789999999999999999999888888888877 7777666553
Q ss_pred eccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCC
Q 037120 327 VSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDH 406 (489)
Q Consensus 327 ~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~ 406 (489)
.++++|+.||
T Consensus 205 ----------------------------------------------------------------------slcasGgkdg 214 (315)
T KOG0279|consen 205 ----------------------------------------------------------------------SLCASGGKDG 214 (315)
T ss_pred ----------------------------------------------------------------------CEEecCCCCc
Confidence 3566788999
Q ss_pred cEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccccccc
Q 037120 407 GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCTS 483 (489)
Q Consensus 407 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~~ 483 (489)
.+.+||+..+ +.++.++ |...|.+++|+|+...|+.+...+ |.||..+.+..-
T Consensus 215 ~~~LwdL~~~----------k~lysl~-------------a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v 267 (315)
T KOG0279|consen 215 EAMLWDLNEG----------KNLYSLE-------------AFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVV 267 (315)
T ss_pred eEEEEEccCC----------ceeEecc-------------CCCeEeeEEecCCceeEeeccCCc-eEEEeccchhhh
Confidence 9999999999 7776665 899999999999999888877754 999988776543
No 17
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.1e-32 Score=223.24 Aligned_cols=277 Identities=17% Similarity=0.205 Sum_probs=214.7
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..++..|+++.|+-+|+|.++++.|.+|++|+...+.++. + +.+|-.+ |..++.+.++. .+
T Consensus 13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik--------t------YsghG~E---VlD~~~s~Dns-kf 74 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK--------T------YSGHGHE---VLDAALSSDNS-KF 74 (307)
T ss_pred ecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee--------e------ecCCCce---eeecccccccc-cc
Confidence 34566779999999999999999999999999998855554 2 2445445 88899998886 66
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| ..|.+||++++ ++ .+.+ .+|.+.|+.++|+.... .+++|+.|.++++||.|+....+++.
T Consensus 75 ~s~GgD-k~v~vwDV~TG-----kv---~Rr~----rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 75 ASCGGD-KAVQVWDVNTG-----KV---DRRF----RGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred ccCCCC-ceEEEEEcccC-----ee---eeec----ccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccch
Confidence 666666 99999999544 33 2233 88999999999998887 99999999999999999987667888
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
+....+.|.++..+ +..+++|+.||++|.||+|.|+.....-+|. |++++|+++++
T Consensus 141 ldea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~p------it~vs~s~d~n---------------- 196 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHP------ITSVSFSKDGN---------------- 196 (307)
T ss_pred hhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCCc------ceeEEecCCCC----------------
Confidence 88778899999885 5678888889999999999998655555433 77777766664
Q ss_pred eEEEeCCCCCeEEEEEecCC-------ceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecC
Q 037120 332 HSIDLDPSCSYQLAFHLDDG-------WSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSS 404 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~-------w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~ 404 (489)
..++.+++.. --+++..|.||.+.-+...+++... ...+++||+
T Consensus 197 ----------c~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qs-------------------dthV~sgSE 247 (307)
T KOG0316|consen 197 ----------CSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQS-------------------DTHVFSGSE 247 (307)
T ss_pred ----------EEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccc-------------------ceeEEeccC
Confidence 3333333333 1256777888888877766666666 789999999
Q ss_pred CCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCc-eEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 405 DHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEG-VTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 405 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
||.+++||+-.. ..+..+. .|... |.++++||...-+++++..+ +.+|-
T Consensus 248 DG~Vy~wdLvd~----------~~~sk~~------------~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~~ 297 (307)
T KOG0316|consen 248 DGKVYFWDLVDE----------TQISKLS------------VVSTVIVTDLSCHPTMDDFITATGHG-DLFWY 297 (307)
T ss_pred CceEEEEEeccc----------eeeeeec------------cCCceeEEeeecccCccceeEecCCc-eecee
Confidence 999999999988 7777776 56666 89999999998777666544 44443
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.4e-31 Score=222.49 Aligned_cols=269 Identities=18% Similarity=0.263 Sum_probs=206.4
Q ss_pred CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEec
Q 037120 108 GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIG 187 (489)
Q Consensus 108 g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~ 187 (489)
.-+||+++.|.+||+|...++.|.... -|.. ..|..+...|++. .|++++ .-.|++||++
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTi---------------qh~d--sqVNrLeiTpdk~-~LAaa~--~qhvRlyD~~ 69 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTI---------------QHPD--SQVNRLEITPDKK-DLAAAG--NQHVRLYDLN 69 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEE---------------ecCc--cceeeEEEcCCcc-hhhhcc--CCeeEEEEcc
Confidence 358999999999999999998877621 1211 1288899999986 677777 4699999997
Q ss_pred cCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeec
Q 037120 188 YISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAE 267 (489)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~ 267 (489)
.....| ..++.+|++.|+++.|.-+|. .++|||+||+++|||+|... +- ....|..+|+++..+|+
T Consensus 70 S~np~P----------v~t~e~h~kNVtaVgF~~dgr-WMyTgseDgt~kIWdlR~~~--~q-R~~~~~spVn~vvlhpn 135 (311)
T KOG0315|consen 70 SNNPNP----------VATFEGHTKNVTAVGFQCDGR-WMYTGSEDGTVKIWDLRSLS--CQ-RNYQHNSPVNTVVLHPN 135 (311)
T ss_pred CCCCCc----------eeEEeccCCceEEEEEeecCe-EEEecCCCceEEEEeccCcc--cc-hhccCCCCcceEEecCC
Confidence 665443 233488999999999999999 99999999999999999854 44 34467899999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCcccceeec-CCccCCCCeeEEEeCCCCcceeecc----------------------ccc
Q 037120 268 NQIIFAAGKHGSIYLWDLRGGRTSAPFHN-HKEVCHLPLTSLKLASMLEKIGTLK----------------------AQS 324 (489)
Q Consensus 268 ~~~l~~~~~dg~i~lwd~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~i~~~~----------------------~~~ 324 (489)
...|++|..+|.|++||++...+...+-. ... +|.++...|||++++... ...
T Consensus 136 QteLis~dqsg~irvWDl~~~~c~~~liPe~~~----~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~ 211 (311)
T KOG0315|consen 136 QTELISGDQSGNIRVWDLGENSCTHELIPEDDT----SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF 211 (311)
T ss_pred cceEEeecCCCcEEEEEccCCccccccCCCCCc----ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe
Confidence 99999999999999999998777555432 233 499999999999883211 123
Q ss_pred eeeccceeEEEeCCCCCeEEEEEecCC---ce--E---EEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCc
Q 037120 325 KIVSQEIHSIDLDPSCSYQLAFHLDDG---WS--G---VLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNS 396 (489)
Q Consensus 325 ~~~~~~i~~~~~~p~~~~~~~~~~~~~---w~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (489)
..+...+..+.+||+++++++++.|.+ |. . .....+++..-+.. +.|+.+ +
T Consensus 212 ~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWd--c~FS~d-------------------g 270 (311)
T KOG0315|consen 212 QAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWD--CAFSAD-------------------G 270 (311)
T ss_pred ecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEe--eeeccC-------------------c
Confidence 344667889999999999999999887 53 1 11222333211111 133334 8
Q ss_pred EEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEee
Q 037120 397 IYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTH 457 (489)
Q Consensus 397 ~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~ 457 (489)
.|+++|+.|+.+++||+..+ +.+.... ||.....|++.+
T Consensus 271 ~YlvTassd~~~rlW~~~~~----------k~v~qy~------------gh~K~~vc~~ln 309 (311)
T KOG0315|consen 271 EYLVTASSDHTARLWDLSAG----------KEVRQYQ------------GHHKAAVCVALN 309 (311)
T ss_pred cEEEecCCCCceeecccccC----------ceeeecC------------CcccccEEEEee
Confidence 99999999999999999999 7777777 898888888764
No 19
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=4.2e-32 Score=244.17 Aligned_cols=277 Identities=16% Similarity=0.209 Sum_probs=214.0
Q ss_pred cCCCceeEEEECCCC-cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 94 FGKPGISALDFDCKG-IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g-~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
.+...|+.+.+-|+. ..+|+++..+.|.|||..+....... .|...+...+.+|..++++ ++|++.....++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~----~~~~~Pdl~L~gH~~eg~g---lsWn~~~~g~Ll 194 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA----SGECRPDLRLKGHEKEGYG---LSWNRQQEGTLL 194 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc----cccCCCceEEEeecccccc---cccccccceeEe
Confidence 355568888888875 56677888999999999885544432 1346777788999999888 999999999999
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeec
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELS 252 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 252 (489)
+++.| ++|++||+...... ..++.+...+ .+|...|.+++|++....+|++++.|+.+.|||+|++...+.+..
T Consensus 195 s~~~d-~~i~lwdi~~~~~~-~~~~~p~~~~----~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~ 268 (422)
T KOG0264|consen 195 SGSDD-HTICLWDINAESKE-DKVVDPKTIF----SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV 268 (422)
T ss_pred eccCC-CcEEEEeccccccC-CccccceEEe----ecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc
Confidence 99988 99999999765543 2344444545 899999999999999998999999999999999997433345566
Q ss_pred cCCCCceeEEEEeecCCEEEEE-eCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 253 TGSHGTLNSIQLHAENQIIFAA-GKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 253 ~~h~~~v~~~~~~p~~~~l~~~-~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
.+|.+.|+|++|+|.+.+++++ +.|++|+|||+|+.+. ++++.+|... |..|.|+|..
T Consensus 269 ~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de----v~~V~WSPh~---------------- 328 (422)
T KOG0264|consen 269 KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDE----VFQVEWSPHN---------------- 328 (422)
T ss_pred cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcc----eEEEEeCCCC----------------
Confidence 7999999999999977766555 5599999999999765 8888888877 7777666532
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
..++++++.|+.+.|
T Consensus 329 -----------------------------------------------------------------etvLASSg~D~rl~v 343 (422)
T KOG0264|consen 329 -----------------------------------------------------------------ETVLASSGTDRRLNV 343 (422)
T ss_pred -----------------------------------------------------------------CceeEecccCCcEEE
Confidence 445677789999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCc--ccCCCceEEEEeeCCCC-eEEeccCcceeEEEecc
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRF--VPLSEGVTACVTHPLNN-TIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~va~~p~~~-~i~sgs~dg~i~v~~~~ 478 (489)
||+..- ...+..+.....+.+-.| -||...|+.++|+|..+ .|+|.++|+.+.||.--
T Consensus 344 WDls~i----------g~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 344 WDLSRI----------GEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred Eecccc----------ccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 999755 222211111112222223 59999999999999998 78899999999999544
No 20
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.2e-32 Score=257.10 Aligned_cols=268 Identities=13% Similarity=0.161 Sum_probs=220.8
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+.+|.+.|.+++...+|.+||+|+.|.++++|.++..... ........+|+.. |.+|+++..+..+|
T Consensus 361 i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~----------~~~~a~~~gH~~s---vgava~~~~~asff 427 (775)
T KOG0319|consen 361 IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK----------SLCVAQANGHTNS---VGAVAGSKLGASFF 427 (775)
T ss_pred EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch----------hhhhhhhcccccc---cceeeecccCccEE
Confidence 5667788999997788899999999999999988542221 2222334678888 88899999888899
Q ss_pred EEEecCCCEEEEEEeccCCCCCc-eeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPV-EVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
++++.| +++++|++........ ..+.... +-..|...|++++.+|++. +|+|||.|.+.+||++.... ...
T Consensus 428 vsvS~D-~tlK~W~l~~s~~~~~~~~~~~~~----t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~~~--l~~ 499 (775)
T KOG0319|consen 428 VSVSQD-CTLKLWDLPKSKETAFPIVLTCRY----TERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQLR--LLG 499 (775)
T ss_pred EEecCC-ceEEEecCCCcccccccceehhhH----HHHhhcccccceEecCCCc-eEEecccccceeeecccCce--EEE
Confidence 999999 9999999965221111 1111111 1266999999999999999 99999999999999999655 677
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
.+.+|...|.|+.|+|..+.+++++.|++|+||.+.++.++++|.+|..+ |-.+.|-
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a----Vlra~F~------------------- 556 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA----VLRASFI------------------- 556 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccce----eEeeeee-------------------
Confidence 88899999999999999999999999999999999999999999999866 4333221
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
.. +..+++++.||-|+|
T Consensus 557 --------------------------------------------~~-------------------~~qliS~~adGliKl 573 (775)
T KOG0319|consen 557 --------------------------------------------RN-------------------GKQLISAGADGLIKL 573 (775)
T ss_pred --------------------------------------------eC-------------------CcEEEeccCCCcEEE
Confidence 11 667889999999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccccccccccc
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCTSDSMLE 488 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~~~~~~~ 488 (489)
|++.+. +++..+. .|.+.|.+++.+|...+|+|||.||.|.+|-+-.+..+..|.+
T Consensus 574 Wnikt~----------eC~~tlD------------~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~~~~ee~~ 629 (775)
T KOG0319|consen 574 WNIKTN----------ECEMTLD------------AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEEEQNEEQE 629 (775)
T ss_pred Eeccch----------hhhhhhh------------hccceeEEEeecCccceeEecCCCeEEEEeecCcHHHHHHHHH
Confidence 999999 9999999 9999999999999999999999999999998777666665544
No 21
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-31 Score=232.67 Aligned_cols=301 Identities=13% Similarity=0.190 Sum_probs=234.3
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..+...|..+-|.|+-.++++++.|++|++||..++++.. .+.+|+.. |..++|+..+. .+
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~--------------~LrGHt~s---v~di~~~a~Gk-~l 165 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER--------------SLRGHTDS---VFDISFDASGK-YL 165 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh--------------hhhccccc---eeEEEEecCcc-EE
Confidence 34466779999999999999999999999999999965543 34778888 88899999985 88
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| -.+++||.... ....+ .+.+|...|.+++|-|.|. ++++++.|.+|+.||+.++. |++.
T Consensus 166 ~tcSsD-l~~~LWd~~~~-------~~c~k----s~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~--cv~t 230 (406)
T KOG0295|consen 166 ATCSSD-LSAKLWDFDTF-------FRCIK----SLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGY--CVKT 230 (406)
T ss_pred EecCCc-cchhheeHHHH-------HHHHH----HhcCcccceeeEEEEecCC-eeeecccccceeEEecccce--eEEe
Confidence 888877 77999999321 22222 3488999999999999998 99999999999999999988 8999
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
+.+|...|..++.+.||.++++++.|.+|++|-+.++++...+..|+.+ |.+++|.|...+-.......
T Consensus 231 ~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~----vEci~wap~~~~~~i~~at~------- 299 (406)
T KOG0295|consen 231 FPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHP----VECIAWAPESSYPSISEATG------- 299 (406)
T ss_pred ccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccc----eEEEEecccccCcchhhccC-------
Confidence 9999999999999999999999999999999999999999999999977 99999999875321111110
Q ss_pred eEEEeCC-CCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 332 HSIDLDP-SCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 332 ~~~~~~p-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
+. .+.++...+.|.. .+++++.+|...-...-...|. +.++++| ||+|++++.+|++++|
T Consensus 300 -----~~~~~~~l~s~SrDkt-Ik~wdv~tg~cL~tL~ghdnwV------------r~~af~p-~Gkyi~ScaDDktlrv 360 (406)
T KOG0295|consen 300 -----STNGGQVLGSGSRDKT-IKIWDVSTGMCLFTLVGHDNWV------------RGVAFSP-GGKYILSCADDKTLRV 360 (406)
T ss_pred -----CCCCccEEEeecccce-EEEEeccCCeEEEEEeccccee------------eeeEEcC-CCeEEEEEecCCcEEE
Confidence 11 2234444443333 2344444332211100000111 1122222 3899999999999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
||+... +....++ .|...|++++||.+.++++||+.|.++.||.-
T Consensus 361 wdl~~~----------~cmk~~~------------ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 361 WDLKNL----------QCMKTLE------------AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEeccc----------eeeeccC------------CCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999 8888888 99999999999999999999999999999963
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.9e-31 Score=237.23 Aligned_cols=306 Identities=11% Similarity=0.124 Sum_probs=223.6
Q ss_pred cCCCceeEEEECCCCc-EEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCC-CCCCceeEEEeeCCCCCEE
Q 037120 94 FGKPGISALDFDCKGI-YLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHI-PLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~-~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~-~~~~~V~~v~~~~~~~~~l 171 (489)
.|+..|.+++|+|-.. +||+|+.|-+.++|++.......... -.+......-++. ....+|++++|+.+|. +|
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q----~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~-~L 250 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ----LVLRHCIREGGKSVPSNKDVTSLDWNNDGT-LL 250 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh----hhhhhhhhhhcccCCccCCcceEEecCCCC-eE
Confidence 3777899999999877 99999999999999987511111000 0000000011111 1224599999999986 99
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++|+.| |.++||+.... .+.++..|.++|.++.|+.+|. +|++++.|+++.+||..++. +.+.
T Consensus 251 atG~~~-G~~riw~~~G~-------------l~~tl~~HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g~--~~q~ 313 (524)
T KOG0273|consen 251 ATGSED-GEARIWNKDGN-------------LISTLGQHKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTGT--VKQQ 313 (524)
T ss_pred EEeecC-cEEEEEecCch-------------hhhhhhccCCceEEEEEcCCCC-EEEeccCCccEEEEeccCce--EEEe
Confidence 999999 99999998321 2233477999999999999999 99999999999999999887 6667
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
+.-|+.+-..+.|-.+. .+++.+.||.|+++-+..-..+.++.+|.+. |.++.|+|.|..+++..
T Consensus 314 f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~----V~alk~n~tg~LLaS~S---------- 378 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGE----VNALKWNPTGSLLASCS---------- 378 (524)
T ss_pred eeeccCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCc----eEEEEECCCCceEEEec----------
Confidence 77788876788887554 4578888999999999988889999999988 99999999888776422
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
.|+...+....+. ....-+.+|...++.+ .|++.. .+.|.|..+..+++++.|++|++|
T Consensus 379 ------dD~TlkiWs~~~~---~~~~~l~~Hskei~t~--~wsp~g----------~v~~n~~~~~~l~sas~dstV~lw 437 (524)
T KOG0273|consen 379 ------DDGTLKIWSMGQS---NSVHDLQAHSKEIYTI--KWSPTG----------PVTSNPNMNLMLASASFDSTVKLW 437 (524)
T ss_pred ------CCCeeEeeecCCC---cchhhhhhhccceeeE--eecCCC----------CccCCCcCCceEEEeecCCeEEEE
Confidence 1111111100000 1111222333333333 344442 234445558899999999999999
Q ss_pred eccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 412 DFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
|+..+ ..+..+. .|..+|.+++|+|++.++|+|+.||.|.+|+-|.
T Consensus 438 dv~~g----------v~i~~f~------------kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 438 DVESG----------VPIHTLM------------KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred EccCC----------ceeEeec------------cCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence 99999 7777776 8999999999999999999999999999998764
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-30 Score=234.20 Aligned_cols=282 Identities=13% Similarity=0.231 Sum_probs=218.7
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
..+.|++++|+.+|.+||+|+.||.++||+........ +-.|.++ |.++.|+..+. .|+++
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~t---------------l~~HkgP---I~slKWnk~G~-yilS~ 294 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLIST---------------LGQHKGP---IFSLKWNKKGT-YILSG 294 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhh---------------hhccCCc---eEEEEEcCCCC-EEEec
Confidence 44669999999999999999999999999988722211 1335555 99999999986 66677
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
+.| +++.+||...+ ... ..+.-|..+-.+|.|..+. .|++++.|+.|+|+-+.... ++..+.+
T Consensus 295 ~vD-~ttilwd~~~g-----~~~-------q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~--P~~t~~G 357 (524)
T KOG0273|consen 295 GVD-GTTILWDAHTG-----TVK-------QQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDR--PVKTFIG 357 (524)
T ss_pred cCC-ccEEEEeccCc-----eEE-------EeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCC--cceeeec
Confidence 777 99999999332 111 1124477777889998655 59999999999999987644 5667789
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEE
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSI 334 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~ 334 (489)
|.+.|+++.|+|.|.+|++++.|++++||.+....+...+..|... |..+.|+|+|.....
T Consensus 358 H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hske----i~t~~wsp~g~v~~n--------------- 418 (524)
T KOG0273|consen 358 HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKE----IYTIKWSPTGPVTSN--------------- 418 (524)
T ss_pred ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccc----eeeEeecCCCCccCC---------------
Confidence 9999999999999999999999999999999999999999999988 999999999865532
Q ss_pred EeCCCCC-eEEEEEecCC---ce----EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCC
Q 037120 335 DLDPSCS-YQLAFHLDDG---WS----GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDH 406 (489)
Q Consensus 335 ~~~p~~~-~~~~~~~~~~---w~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~ 406 (489)
|... .++++..++. |. ..+..+..|...++.. .|+++ +.|+++|+.|+
T Consensus 419 ---~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysv--afS~~-------------------g~ylAsGs~dg 474 (524)
T KOG0273|consen 419 ---PNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSV--AFSPN-------------------GRYLASGSLDG 474 (524)
T ss_pred ---CcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEE--EecCC-------------------CcEEEecCCCC
Confidence 3322 3333333333 21 2233344444444444 44444 88999999999
Q ss_pred cEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecc
Q 037120 407 GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 407 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~ 478 (489)
+|++|+..++ +..+... -.+.|..+.|+-.|+.|+.+-.||.++|....
T Consensus 475 ~V~iws~~~~----------~l~~s~~-------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 475 CVHIWSTKTG----------KLVKSYQ-------------GTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eeEeccccch----------heeEeec-------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999999 7776654 45679999999999999999999999997643
No 24
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-31 Score=246.38 Aligned_cols=249 Identities=12% Similarity=0.204 Sum_probs=208.5
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+......|.++.|+|...+++++-.+|.|.|||.++...+.. ++-...+ |.+..|-+-. +-+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVks--------feV~~~P---------vRa~kfiaRk-nWi 70 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKS--------FEVSEVP---------VRAAKFIARK-NWI 70 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeee--------eeecccc---------hhhheeeecc-ceE
Confidence 444566799999999999999999999999999999554442 1111112 8888888765 488
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++|++| ..|+||+.++. .. ++++..|.+-|.+|+.+|..+ +++|+|.|-+|++||... +..|.+.
T Consensus 71 v~GsDD-~~IrVfnynt~--------ek----V~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~-~wa~~qt 135 (794)
T KOG0276|consen 71 VTGSDD-MQIRVFNYNTG--------EK----VKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWEN-EWACEQT 135 (794)
T ss_pred EEecCC-ceEEEEecccc--------ee----eEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccC-ceeeeeE
Confidence 889888 99999999433 22 233488999999999999999 999999999999999986 4558889
Q ss_pred ccCCCCceeEEEEeecC-CEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 252 STGSHGTLNSIQLHAEN-QIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
+.+|+..|.+++|+|.. +.+++++-|++|++|.+.+..+..++++|... |+++.|-+-|
T Consensus 136 feGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekG----VN~Vdyy~~g---------------- 195 (794)
T KOG0276|consen 136 FEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKG----VNCVDYYTGG---------------- 195 (794)
T ss_pred EcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccC----cceEEeccCC----------------
Confidence 99999999999999954 55677777999999999998889999999877 7777544321
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
+ ..|+++|++|.+|+|
T Consensus 196 ---------------------------------------------d-------------------kpylIsgaDD~tiKv 211 (794)
T KOG0276|consen 196 ---------------------------------------------D-------------------KPYLISGADDLTIKV 211 (794)
T ss_pred ---------------------------------------------C-------------------cceEEecCCCceEEE
Confidence 1 458999999999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
||..+. .+++.++ ||...|..+.|||.-+.|+|||+||++++|-.+.
T Consensus 212 WDyQtk----------~CV~TLe------------GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 212 WDYQTK----------SCVQTLE------------GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred eecchH----------HHHHHhh------------cccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence 999999 9999999 9999999999999999999999999999995543
No 25
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.1e-30 Score=232.83 Aligned_cols=323 Identities=15% Similarity=0.216 Sum_probs=219.2
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
.|..-|+|+.|+|||.++|+++.||+|.|||-.+++.+.. ++. -.+|.+. |.+++|+||++ .+++
T Consensus 188 ~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~--------l~~---~~aHkGs---IfalsWsPDs~-~~~T 252 (603)
T KOG0318|consen 188 EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGE--------LED---SDAHKGS---IFALSWSPDST-QFLT 252 (603)
T ss_pred ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEE--------ecC---CCCcccc---EEEEEECCCCc-eEEE
Confidence 3445599999999999999999999999999998665542 222 2457777 99999999987 6777
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST 253 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 253 (489)
++.| .+++|||+... .+... +...-. -.+.-..+-|. .. .|++.+.+|+|.+++...++ ..+.+.
T Consensus 253 ~SaD-kt~KIWdVs~~-----slv~t---~~~~~~-v~dqqvG~lWq--kd-~lItVSl~G~in~ln~~d~~--~~~~i~ 317 (603)
T KOG0318|consen 253 VSAD-KTIKIWDVSTN-----SLVST---WPMGST-VEDQQVGCLWQ--KD-HLITVSLSGTINYLNPSDPS--VLKVIS 317 (603)
T ss_pred ecCC-ceEEEEEeecc-----ceEEE---eecCCc-hhceEEEEEEe--CC-eEEEEEcCcEEEEecccCCC--hhheec
Confidence 7777 99999999543 22111 111001 11234455565 44 79999999999999999887 666788
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCccccee-ecCCccCCCCeeEEEeCCCCcceee----------c--
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPF-HNHKEVCHLPLTSLKLASMLEKIGT----------L-- 320 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~i~~----------~-- 320 (489)
+|...|++++.+|++.+|++|+.||.|.-||..++..-+.. +.|... |.+++-+..+.++.. +
T Consensus 318 GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nq----I~~~~~~~~~~~~t~g~Dd~l~~~~~~~ 393 (603)
T KOG0318|consen 318 GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQ----IKGMAASESGELFTIGWDDTLRVISLKD 393 (603)
T ss_pred ccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccce----EEEEeecCCCcEEEEecCCeEEEEeccc
Confidence 99999999999999999999999999999999988763332 345544 666665554444300 0
Q ss_pred --------------------------------------cccce----eeccceeEEEeCCCCCeEEEEEecCCceEEEEe
Q 037120 321 --------------------------------------KAQSK----IVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDV 358 (489)
Q Consensus 321 --------------------------------------~~~~~----~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~ 358 (489)
..... ........++++|++..+++...|+. ..+..+
T Consensus 394 ~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgk-vhvysl 472 (603)
T KOG0318|consen 394 NGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGK-VHVYSL 472 (603)
T ss_pred CcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccce-EEEEEe
Confidence 00000 00122345556666666665555543 111111
Q ss_pred eccce-eeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhh
Q 037120 359 YNSRV-SHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTK 437 (489)
Q Consensus 359 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (489)
..+.. ....+. -....+..++++|+ +.|+++|...+.+-+||+.+. +...
T Consensus 473 ~g~~l~ee~~~~-----------~h~a~iT~vaySpd-~~yla~~Da~rkvv~yd~~s~----------~~~~------- 523 (603)
T KOG0318|consen 473 SGDELKEEAKLL-----------EHRAAITDVAYSPD-GAYLAAGDASRKVVLYDVASR----------EVKT------- 523 (603)
T ss_pred cCCcccceeeee-----------cccCCceEEEECCC-CcEEEEeccCCcEEEEEcccC----------ceec-------
Confidence 11110 000000 00011223556666 678888889999999999988 4421
Q ss_pred hcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccccccc
Q 037120 438 LKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCTSD 484 (489)
Q Consensus 438 ~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~~~ 484 (489)
+++.-|...|++++|+|+..++|+||.|-+|.||+.++.+...
T Consensus 524 ----~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i 566 (603)
T KOG0318|consen 524 ----NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHI 566 (603)
T ss_pred ----ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhhe
Confidence 2233599999999999999999999999999999999887653
No 26
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=6.2e-32 Score=234.62 Aligned_cols=235 Identities=20% Similarity=0.246 Sum_probs=197.3
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
......+|.|+.++ ...+++|..|.+|+|||..+..+... +.||++. |.|+.|.. .++
T Consensus 193 ~Se~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~--------------L~GHtGS---VLCLqyd~---rvi 250 (499)
T KOG0281|consen 193 RSENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKI--------------LTGHTGS---VLCLQYDE---RVI 250 (499)
T ss_pred CcccCCceEEEEec--chhhhcccccCceEEeccccHHHHHh--------------hhcCCCc---EEeeeccc---eEE
Confidence 34455679999985 45799999999999999999776663 3778888 99999964 399
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-cee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SLE 250 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~ 250 (489)
++|+.| .+|+|||++.+ + .+.++.+|...|..+.|+ +. +++|++.|.++.+||+.++... +.+
T Consensus 251 isGSSD-sTvrvWDv~tg--e----------~l~tlihHceaVLhlrf~--ng-~mvtcSkDrsiaVWdm~sps~it~rr 314 (499)
T KOG0281|consen 251 VSGSSD-STVRVWDVNTG--E----------PLNTLIHHCEAVLHLRFS--NG-YMVTCSKDRSIAVWDMASPTDITLRR 314 (499)
T ss_pred EecCCC-ceEEEEeccCC--c----------hhhHHhhhcceeEEEEEe--CC-EEEEecCCceeEEEeccCchHHHHHH
Confidence 999999 99999999433 1 122347799999999997 34 8999999999999999987644 555
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
.+.+|...|+.+.|+ .+++++++.|.+|++|++.++..+.++.+|+.. |.++++.
T Consensus 315 VLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRG----IAClQYr------------------- 369 (499)
T KOG0281|consen 315 VLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRG----IACLQYR------------------- 369 (499)
T ss_pred HHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhccccc----ceehhcc-------------------
Confidence 667999999999995 569999999999999999999999999998865 4333210
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
+.++++||.|++|++
T Consensus 370 -----------------------------------------------------------------~rlvVSGSSDntIRl 384 (499)
T KOG0281|consen 370 -----------------------------------------------------------------DRLVVSGSSDNTIRL 384 (499)
T ss_pred -----------------------------------------------------------------CeEEEecCCCceEEE
Confidence 889999999999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecc
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~ 478 (489)
||+..+ ..+..++ ||++-|.++-| +.+.|++|+.||.|+||...
T Consensus 385 wdi~~G----------~cLRvLe------------GHEeLvRciRF--d~krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 385 WDIECG----------ACLRVLE------------GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred Eecccc----------HHHHHHh------------chHHhhhheee--cCceeeeccccceEEEEecc
Confidence 999999 9999999 99999999999 67899999999999999643
No 27
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.98 E-value=1.2e-30 Score=221.80 Aligned_cols=236 Identities=14% Similarity=0.208 Sum_probs=183.4
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
|..++|+|.|+++|+|+.|....||++.+..... ...-..++.+|+.- +.|+.|-+++ .|++++.|
T Consensus 100 VMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g--------~~~v~r~l~gHtgy---lScC~f~dD~--~ilT~SGD- 165 (343)
T KOG0286|consen 100 VMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEG--------NVRVSRELAGHTGY---LSCCRFLDDN--HILTGSGD- 165 (343)
T ss_pred EEEEEECCCCCeEEecCcCceeEEEecccccccc--------cceeeeeecCccce---eEEEEEcCCC--ceEecCCC-
Confidence 9999999999999999999999999998631111 11222234566666 9999999875 67777777
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec-CCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCC
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA-VNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHG 257 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~ 257 (489)
.++.+||++.+ +....| .||.+.|.++++.| +++ .|++|+.|+..++||+|.+. +.+.+.+|+.
T Consensus 166 ~TCalWDie~g--------~~~~~f----~GH~gDV~slsl~p~~~n-tFvSg~cD~~aklWD~R~~~--c~qtF~ghes 230 (343)
T KOG0286|consen 166 MTCALWDIETG--------QQTQVF----HGHTGDVMSLSLSPSDGN-TFVSGGCDKSAKLWDVRSGQ--CVQTFEGHES 230 (343)
T ss_pred ceEEEEEcccc--------eEEEEe----cCCcccEEEEecCCCCCC-eEEecccccceeeeeccCcc--eeEeeccccc
Confidence 99999999433 112333 89999999999999 555 99999999999999999987 8999999999
Q ss_pred ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeC
Q 037120 258 TLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLD 337 (489)
Q Consensus 258 ~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 337 (489)
.|++++|.|+|.-+++|+.|+++|+||+|..+.+..+...... .+|++++|+
T Consensus 231 DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~----------------------------~gitSv~FS 282 (343)
T KOG0286|consen 231 DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSII----------------------------CGITSVAFS 282 (343)
T ss_pred ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCccc----------------------------CCceeEEEc
Confidence 9999999999999999999999999999998776666532222 234555566
Q ss_pred CCCCeEEEEEecCC---ce----EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 338 PSCSYQLAFHLDDG---WS----GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 338 p~~~~~~~~~~~~~---w~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
..|++++++..|.+ |. .......||.+++.|+ ...++ +.-+.+||-|.++||
T Consensus 283 ~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl--~~s~D-------------------G~av~TgSWDs~lri 341 (343)
T KOG0286|consen 283 KSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCL--GVSPD-------------------GMAVATGSWDSTLRI 341 (343)
T ss_pred ccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEE--EECCC-------------------CcEEEecchhHheee
Confidence 66666555544443 52 3444556888887776 44455 889999999999999
Q ss_pred Ee
Q 037120 411 LD 412 (489)
Q Consensus 411 wd 412 (489)
|.
T Consensus 342 W~ 343 (343)
T KOG0286|consen 342 WA 343 (343)
T ss_pred cC
Confidence 94
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.98 E-value=3.3e-31 Score=253.60 Aligned_cols=183 Identities=15% Similarity=0.246 Sum_probs=161.0
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|..+.|+|+.++|++++.|++||+|.+.+..+.. .+.||..+ |..+.|+|.| +.+
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V--------------~y~GH~~P---VwdV~F~P~G-yYF 508 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV--------------IYKGHLAP---VWDVQFAPRG-YYF 508 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEE--------------EecCCCcc---eeeEEecCCc-eEE
Confidence 56677889999999999999999999999999999955544 23566666 8889999997 688
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| ++.++|.... ..+.+.+ .+|-..|.++.|+|+.. ++++||.|.+|++||+.++. .++.
T Consensus 509 atas~D-~tArLWs~d~--------~~PlRif----aghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~--~VRi 572 (707)
T KOG0263|consen 509 ATASHD-QTARLWSTDH--------NKPLRIF----AGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGN--SVRI 572 (707)
T ss_pred EecCCC-ceeeeeeccc--------CCchhhh----cccccccceEEECCccc-ccccCCCCceEEEEEcCCCc--EEEE
Confidence 999888 9999999832 3345555 89999999999999998 99999999999999999998 7889
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCC
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLAS 312 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 312 (489)
+.+|.++|.+++|+|+|++|++|+.||.|.+||+.+++.+..+.+|.+. |.+|.|+.
T Consensus 573 F~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~t----i~SlsFS~ 629 (707)
T KOG0263|consen 573 FTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGT----IYSLSFSR 629 (707)
T ss_pred ecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCc----eeEEEEec
Confidence 9999999999999999999999999999999999999999999999766 77766544
No 29
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.98 E-value=1.6e-29 Score=230.93 Aligned_cols=350 Identities=13% Similarity=0.159 Sum_probs=231.1
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccC-CCCCC------------------CCCc----------
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCN-GTLPG------------------VGLK---------- 142 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~-~~~~~------------------~g~~---------- 142 (489)
+..|...++-..|+|.|.|+|+|...|+|||||....+..-+ +...- +|.-
T Consensus 55 YtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~ 134 (603)
T KOG0318|consen 55 YTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLW 134 (603)
T ss_pred eccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEe
Confidence 455656689999999999999999999999999876332222 11100 0000
Q ss_pred ---ccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEE
Q 037120 143 ---EDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAF 219 (489)
Q Consensus 143 ---~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 219 (489)
....++.||... |.+++|-|..+..++++++| ++|-+|+- . ...|..++..|+.-|+++.|
T Consensus 135 DSG~SvGei~GhSr~---ins~~~KpsRPfRi~T~sdD-n~v~ffeG-----P-------PFKFk~s~r~HskFV~~VRy 198 (603)
T KOG0318|consen 135 DSGNSVGEITGHSRR---INSVDFKPSRPFRIATGSDD-NTVAFFEG-----P-------PFKFKSSFREHSKFVNCVRY 198 (603)
T ss_pred cCCCccceeecccee---EeeeeccCCCceEEEeccCC-CeEEEeeC-----C-------CeeeeecccccccceeeEEE
Confidence 112223456666 99999999999999999988 99999986 1 22244555889999999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEECCCCCcC-ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCC
Q 037120 220 SAVNTSRLIASDTHGVVNIWDRRVGVLP-SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHK 298 (489)
Q Consensus 220 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~ 298 (489)
+|||. +|+|++.||.|.+||-.++++. .+....+|.+.|.+++|+||+..+++++.|.+++|||+.+.+++.++....
T Consensus 199 sPDG~-~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~ 277 (603)
T KOG0318|consen 199 SPDGS-RFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGS 277 (603)
T ss_pred CCCCC-eEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCC
Confidence 99999 9999999999999999998843 222233999999999999999999999999999999999988777665322
Q ss_pred ccCCCCeeEEEeCCCCcce---------------eeccccceeeccceeEEEeCCCCCeEEEEEecCC---ce---EEEE
Q 037120 299 EVCHLPLTSLKLASMLEKI---------------GTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDG---WS---GVLD 357 (489)
Q Consensus 299 ~~~~~~v~~l~~~~~~~~i---------------~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~---w~---~~~~ 357 (489)
....+.|-+ -|..+ ..+ .+.......|...|+.+..+|++.++++++.|+. |. +.-+
T Consensus 278 ~v~dqqvG~-lWqkd-~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 278 TVEDQQVGC-LWQKD-HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred chhceEEEE-EEeCC-eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 211111222 23311 111 1111334456677778888888777777777665 41 0000
Q ss_pred ee--ccceeeec--------------------------------------CCCCCCcCCCC---------ccccccC---
Q 037120 358 VY--NSRVSHVH--------------------------------------CPPPAWLSDSN---------NSADQLH--- 385 (489)
Q Consensus 358 ~~--~~~~~~~~--------------------------------------~~~~~~~~~~~---------~~~~~~~--- 385 (489)
.. .+|.+.+. +.|........ ..+..+.
T Consensus 356 ~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~ 435 (603)
T KOG0318|consen 356 RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQT 435 (603)
T ss_pred ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCC
Confidence 00 11111110 00000000000 0000000
Q ss_pred ----------CCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEE
Q 037120 386 ----------LRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACV 455 (489)
Q Consensus 386 ----------~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va 455 (489)
...++.+|+ +.+++.|++|+.|+||.+... +...+.. ...|.++|++++
T Consensus 436 ~~~~~~~~y~~s~vAv~~~-~~~vaVGG~Dgkvhvysl~g~----------~l~ee~~----------~~~h~a~iT~va 494 (603)
T KOG0318|consen 436 KVSSIPIGYESSAVAVSPD-GSEVAVGGQDGKVHVYSLSGD----------ELKEEAK----------LLEHRAAITDVA 494 (603)
T ss_pred cceeeccccccceEEEcCC-CCEEEEecccceEEEEEecCC----------cccceee----------eecccCCceEEE
Confidence 112333444 556666789999999999876 3322211 127999999999
Q ss_pred eeCCCCeEEeccCcceeEEEeccccc
Q 037120 456 THPLNNTIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 456 ~~p~~~~i~sgs~dg~i~v~~~~~~~ 481 (489)
++|++.+||+|...+.+.+|+...+-
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASRE 520 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCc
Confidence 99999999999999999999876543
No 30
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=7.7e-30 Score=223.21 Aligned_cols=312 Identities=13% Similarity=0.174 Sum_probs=225.9
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+|..|...|.+++.+|+.+++|||+.|-.-.||++.++... ..+.+|... |+++.|+.++. +
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~--------------~eltgHKDS---Vt~~~Fshdgt-l 120 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA--------------GELTGHKDS---VTCCSFSHDGT-L 120 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce--------------eEecCCCCc---eEEEEEccCce-E
Confidence 48889999999999999999999999999999999985422 234678777 99999999986 9
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
|++|..+ |.|+||++.++... ..+ ..--..+.=+.|+|.+. .|++|+.||.+-+|.+.+.. ..+
T Consensus 121 LATGdms-G~v~v~~~stg~~~--~~~----------~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~--~~k 184 (399)
T KOG0296|consen 121 LATGDMS-GKVLVFKVSTGGEQ--WKL----------DQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQA--LCK 184 (399)
T ss_pred EEecCCC-ccEEEEEcccCceE--EEe----------ecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcc--eee
Confidence 9999999 99999999543211 111 11223677789999888 99999999999999998854 566
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccc------
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQS------ 324 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~------ 324 (489)
.+.+|+.++++=.|.|+|+.++++..||+|++||+.+++.+..+.... . .+.+++.++..+..+.+-....
T Consensus 185 v~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e-~--~~~~~~~~~~~~~~~~~g~~e~~~~~~~ 261 (399)
T KOG0296|consen 185 VMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE-G--LELPCISLNLAGSTLTKGNSEGVACGVN 261 (399)
T ss_pred EecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc-c--CcCCccccccccceeEeccCCccEEEEc
Confidence 888999999999999999999999999999999999999877776322 1 2355566665555441111000
Q ss_pred ------------------eeeccceeEEEeCCCC---CeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccc
Q 037120 325 ------------------KIVSQEIHSIDLDPSC---SYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQ 383 (489)
Q Consensus 325 ------------------~~~~~~i~~~~~~p~~---~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (489)
......+.++.+.|.. +..+....++.. .+++.......++.. .+.
T Consensus 262 ~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i-~iyD~a~~~~R~~c~-----he~------- 328 (399)
T KOG0296|consen 262 NGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTI-AIYDLAASTLRHICE-----HED------- 328 (399)
T ss_pred cccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceE-EEEecccchhheecc-----CCC-------
Confidence 0111223333333333 223333333321 122222211111110 011
Q ss_pred cCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeE
Q 037120 384 LHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTI 463 (489)
Q Consensus 384 ~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i 463 (489)
.+-...|.+ ..|+++++.||.|+.||.+++ +++..+. ||...|.+++.+|+.+.+
T Consensus 329 -~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG----------~l~~~y~------------GH~~~Il~f~ls~~~~~v 383 (399)
T KOG0296|consen 329 -GVTKLKWLN--TDYLLTACANGKVRQWDARTG----------QLKFTYT------------GHQMGILDFALSPQKRLV 383 (399)
T ss_pred -ceEEEEEcC--cchheeeccCceEEeeecccc----------ceEEEEe------------cCchheeEEEEcCCCcEE
Confidence 123345665 578889999999999999999 8887777 999999999999999999
Q ss_pred EeccCcceeEEEec
Q 037120 464 VAGTKNSSLLVVSQ 477 (489)
Q Consensus 464 ~sgs~dg~i~v~~~ 477 (489)
+|+|.|+..+||..
T Consensus 384 vT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 384 VTVSDDNTALVFEV 397 (399)
T ss_pred EEecCCCeEEEEec
Confidence 99999999999864
No 31
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-30 Score=216.75 Aligned_cols=246 Identities=15% Similarity=0.176 Sum_probs=194.8
Q ss_pred CCCceeEEEECCCC-cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 95 GKPGISALDFDCKG-IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 95 ~~~~V~~~~fs~~g-~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
.+.++..++|++.. +.+++++.||+++|||... ...|...++.|..+ |.++.|++.....+++
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~-------------~s~Pi~~~kEH~~E---V~Svdwn~~~r~~~lt 122 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM-------------PSKPIHKFKEHKRE---VYSVDWNTVRRRIFLT 122 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCC-------------CCcchhHHHhhhhh---eEEeccccccceeEEe
Confidence 45678999999874 6778888999999999544 22344445667777 9999999998888888
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST 253 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 253 (489)
++-| ++|++|+..... -+.++.||...|...+|+|..+++|+++|.|+++++||++...+. ..+.
T Consensus 123 sSWD-~TiKLW~~~r~~------------Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~--~~i~ 187 (311)
T KOG0277|consen 123 SSWD-GTIKLWDPNRPN------------SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF--MSIE 187 (311)
T ss_pred eccC-CceEeecCCCCc------------ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce--eEEE
Confidence 8998 999999983221 122348999999999999999999999999999999999987643 3467
Q ss_pred CCCCceeEEEEeecCCEEE-EEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 254 GSHGTLNSIQLHAENQIIF-AAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~-~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
.|..+|.|+.|+.-+..++ +|+.|+.||.||+|+.+. +..+.+|.-+ |+.++|+|-
T Consensus 188 ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A----VRkvk~Sph------------------ 245 (311)
T KOG0277|consen 188 AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA----VRKVKFSPH------------------ 245 (311)
T ss_pred eccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE----EEEEecCcc------------------
Confidence 8999999999998766555 455599999999998764 6666666655 555554431
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
...+++++|.|.++|||
T Consensus 246 ---------------------------------------------------------------~~~lLaSasYDmT~riw 262 (311)
T KOG0277|consen 246 ---------------------------------------------------------------HASLLASASYDMTVRIW 262 (311)
T ss_pred ---------------------------------------------------------------hhhHhhhccccceEEec
Confidence 14568889999999999
Q ss_pred eccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCC-CeEEeccCcceeEEEec
Q 037120 412 DFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLN-NTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~-~~i~sgs~dg~i~v~~~ 477 (489)
|.... +..++... .|++-|..+.|++.. .++|++|+|+.+.||.+
T Consensus 263 ~~~~~---------ds~~e~~~------------~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 263 DPERQ---------DSAIETVD------------HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccc---------hhhhhhhh------------ccceEEeccccccccCceeeecccccceeeecc
Confidence 99865 13444555 799999999999976 49999999999999974
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.8e-29 Score=238.38 Aligned_cols=286 Identities=14% Similarity=0.218 Sum_probs=212.8
Q ss_pred cccCCCceeEEEECCCCcEEEEEec-CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATR-SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~-dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+.-....|..++|+..|++||.|+. -|.+-||++++...+.+ ..+|... |++++++||++ +
T Consensus 303 LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK--------------QQgH~~~---i~~l~YSpDgq-~ 364 (893)
T KOG0291|consen 303 LSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK--------------QQGHSDR---ITSLAYSPDGQ-L 364 (893)
T ss_pred eecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee--------------ccccccc---eeeEEECCCCc-E
Confidence 3444567999999999999999987 48999999998655542 2566666 99999999997 8
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
+++|++| |+|+|||.. ...+.+++.+|+..|+.+.|+..++ .+++++-||+|+.||+.... +.+
T Consensus 365 iaTG~eD-gKVKvWn~~------------SgfC~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYr--NfR 428 (893)
T KOG0291|consen 365 IATGAED-GKVKVWNTQ------------SGFCFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYR--NFR 428 (893)
T ss_pred EEeccCC-CcEEEEecc------------CceEEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccc--eee
Confidence 8999988 999999993 2235677799999999999999999 99999999999999998765 565
Q ss_pred ecc-CCCCceeEEEEeecCCEEEEEeCCC-eEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeecccc-----
Q 037120 251 LST-GSHGTLNSIQLHAENQIIFAAGKHG-SIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQ----- 323 (489)
Q Consensus 251 ~~~-~h~~~v~~~~~~p~~~~l~~~~~dg-~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~----- 323 (489)
++. ...-+..|++.+|.|..+++|+.|. .|++|++.+|+.+..+.+|+++ |.+++|+|++..+++....
T Consensus 429 Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgP----Vs~l~f~~~~~~LaS~SWDkTVRi 504 (893)
T KOG0291|consen 429 TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGP----VSGLSFSPDGSLLASGSWDKTVRI 504 (893)
T ss_pred eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCc----ceeeEEccccCeEEeccccceEEE
Confidence 554 3345678999999999999998865 5999999999999999999977 9999999999999664422
Q ss_pred -----------ceeeccceeEEEeCCCCCeEEEEEecCC---ceEEEEeeccceeeecCCCCC-CcCCC---CccccccC
Q 037120 324 -----------SKIVSQEIHSIDLDPSCSYQLAFHLDDG---WSGVLDVYNSRVSHVHCPPPA-WLSDS---NNSADQLH 385 (489)
Q Consensus 324 -----------~~~~~~~i~~~~~~p~~~~~~~~~~~~~---w~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~ 385 (489)
.......+..+.|.|+|+.+++.++++. |........+........... ...+. ........
T Consensus 505 W~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~ 584 (893)
T KOG0291|consen 505 WDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKT 584 (893)
T ss_pred EEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCc
Confidence 2233567899999999999999999976 321111111000000000000 00000 00111122
Q ss_pred CCcceeecCCcEEEEeecCCCcEEEEeccCC
Q 037120 386 LRKPSWLSTNSIYAVGSSSDHGIHLLDFFPG 416 (489)
Q Consensus 386 ~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~ 416 (489)
...++++++ +.++++|++.+.|++||+.++
T Consensus 585 Ftti~ySaD-G~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 585 FTTICYSAD-GKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred eEEEEEcCC-CCEEEecCCcccEEEEECchh
Confidence 345677777 456667789999999999887
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.9e-29 Score=238.24 Aligned_cols=283 Identities=17% Similarity=0.255 Sum_probs=221.5
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+......|+|.+|++.-++||+|=..|...+|++.....+... .... ..|..++|+..|..+.
T Consensus 261 ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~L--------------Sis~---~~I~t~~~N~tGDWiA 323 (893)
T KOG0291|consen 261 LNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSL--------------SISD---QKILTVSFNSTGDWIA 323 (893)
T ss_pred ecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEe--------------eccc---ceeeEEEecccCCEEE
Confidence 3334456999999999999999999999999999885444321 0011 2288999999987555
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
+.++.- |.+.||+... ..++....+|...+++++++|||+ +++||+.||.|+|||..++- |+.+
T Consensus 324 ~g~~kl-gQLlVweWqs------------EsYVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~Sgf--C~vT 387 (893)
T KOG0291|consen 324 FGCSKL-GQLLVWEWQS------------ESYVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGF--CFVT 387 (893)
T ss_pred EcCCcc-ceEEEEEeec------------cceeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCce--EEEE
Confidence 555555 8999999932 223334488999999999999999 99999999999999999887 8889
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
+..|++.|+.+.|+..|+.+++.+-||+|+.||+...+..++|...... ...+++..|.|..+
T Consensus 388 FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~---QfscvavD~sGelV-------------- 450 (893)
T KOG0291|consen 388 FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI---QFSCVAVDPSGELV-------------- 450 (893)
T ss_pred eccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce---eeeEEEEcCCCCEE--------------
Confidence 9999999999999999999999999999999999999888888753321 24555555555544
Q ss_pred eEEEeCCCCCeEEEEEecCC----ce----EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeec
Q 037120 332 HSIDLDPSCSYQLAFHLDDG----WS----GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSS 403 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~----w~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 403 (489)
.++..|.- |+ +++++..||...+.+. +|.+. +..+++||
T Consensus 451 ------------~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l--~f~~~-------------------~~~LaS~S 497 (893)
T KOG0291|consen 451 ------------CAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGL--SFSPD-------------------GSLLASGS 497 (893)
T ss_pred ------------EeeccceEEEEEEEeecCeeeehhcCCCCcceee--EEccc-------------------cCeEEecc
Confidence 33333222 42 6788888888887766 55555 66999999
Q ss_pred CCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 404 SDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 404 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
.|.+||+||+-... ..++.+ .+...|++++|+|+|..||+++.||.|.+|..|.
T Consensus 498 WDkTVRiW~if~s~---------~~vEtl-------------~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 498 WDKTVRIWDIFSSS---------GTVETL-------------EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred ccceEEEEEeeccC---------ceeeeE-------------eeccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence 99999999986551 233333 3777899999999999999999999999997654
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.1e-28 Score=229.16 Aligned_cols=285 Identities=19% Similarity=0.271 Sum_probs=210.8
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|.+++|+|++++|++++.||.|++|++.+..... ....|... +..+.|+|++. .+
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~--------------~~~~~~~~---i~~~~~~~~~~-~l 66 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR--------------TLKGHTGP---VRDVAASADGT-YL 66 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE--------------EEecCCcc---eeEEEECCCCC-EE
Confidence 45567789999999999999999999999999998743222 12334444 78899999984 77
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| |.|++||+.... . ... +..|...|.++.|++++. ++++++.|+.|++||+++++ ....
T Consensus 67 ~~~~~~-~~i~i~~~~~~~-----~---~~~----~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~--~~~~ 130 (289)
T cd00200 67 ASGSSD-KTIRLWDLETGE-----C---VRT----LTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGK--CLTT 130 (289)
T ss_pred EEEcCC-CeEEEEEcCccc-----c---eEE----EeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcE--EEEE
Confidence 777777 999999994321 1 111 256778999999999977 88888889999999999755 4555
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
+..|...+.+++|+|++.++++++.||.|++||+++++.+..+..|... +.++.|+|++..+..
T Consensus 131 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~------------ 194 (289)
T cd00200 131 LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGE----VNSVAFSPDGEKLLS------------ 194 (289)
T ss_pred eccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccc----cceEEECCCcCEEEE------------
Confidence 6678899999999999888888777999999999988888888777656 888888887755432
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
++.++. ..+++...+....... .. ......+.|.++ +.++++++.|+.|++|
T Consensus 195 --------------~~~~~~-i~i~d~~~~~~~~~~~------~~------~~~i~~~~~~~~-~~~~~~~~~~~~i~i~ 246 (289)
T cd00200 195 --------------SSSDGT-IKLWDLSTGKCLGTLR------GH------ENGVNSVAFSPD-GYLLASGSEDGTIRVW 246 (289)
T ss_pred --------------ecCCCc-EEEEECCCCceecchh------hc------CCceEEEEEcCC-CcEEEEEcCCCcEEEE
Confidence 111110 0122221111111100 00 011233556666 6788888889999999
Q ss_pred eccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 412 DFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
|+.++ +....+. +|...|.+++|+|++..+++++.||.+.+|.
T Consensus 247 ~~~~~----------~~~~~~~------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 247 DLRTG----------ECVQTLS------------GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EcCCc----------eeEEEcc------------ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99887 6666666 7889999999999999999999999999984
No 35
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=2.4e-30 Score=235.61 Aligned_cols=285 Identities=19% Similarity=0.287 Sum_probs=208.1
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccC---CCCC-------------------------------
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCN---GTLP------------------------------- 137 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~---~~~~------------------------------- 137 (489)
+..+...|.+++++|.|..|++|+.|-+|+.||+..+..... .+.|
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD 242 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc
Confidence 555666799999999999999999999999999986421110 0000
Q ss_pred CCCC-----------cccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeee
Q 037120 138 GVGL-----------KEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVV 206 (489)
Q Consensus 138 ~~g~-----------~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~ 206 (489)
+.|. +..-..-.||... ++|.+|+|.....+++++.| |+++|||+...... .+++++...
T Consensus 243 RdG~~~~e~~KGDQYI~Dm~nTKGHia~---lt~g~whP~~k~~FlT~s~D-gtlRiWdv~~~k~q-~qVik~k~~---- 313 (641)
T KOG0772|consen 243 RDGFEIVEFSKGDQYIRDMYNTKGHIAE---LTCGCWHPDNKEEFLTCSYD-GTLRIWDVNNTKSQ-LQVIKTKPA---- 313 (641)
T ss_pred cCCceeeeeeccchhhhhhhccCCceee---eeccccccCcccceEEecCC-CcEEEEecCCchhh-eeEEeeccC----
Confidence 0011 0111122567666 99999999999999999999 99999999655432 244443321
Q ss_pred cCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc-CceeeccCCCC--ceeEEEEeecCCEEEEEeCCCeEEEE
Q 037120 207 GSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL-PSLELSTGSHG--TLNSIQLHAENQIIFAAGKHGSIYLW 283 (489)
Q Consensus 207 ~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~h~~--~v~~~~~~p~~~~l~~~~~dg~i~lw 283 (489)
.+-.-.++.++|+++++ .|++|..||.|.+||.+.... +....-.+|.. .|+||.|+++|++|++-|.|+++++|
T Consensus 314 -~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 314 -GGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVW 391 (641)
T ss_pred -CCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeee
Confidence 45566899999999999 899999999999999865432 34444558887 89999999999999999999999999
Q ss_pred EcCCCcc-cceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccc
Q 037120 284 DLRGGRT-SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSR 362 (489)
Q Consensus 284 d~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~ 362 (489)
|+|+.+. +....+.... -+-+ .+.|||+.+.+++++.
T Consensus 392 DLrq~kkpL~~~tgL~t~--~~~t--------------------------dc~FSPd~kli~TGtS-------------- 429 (641)
T KOG0772|consen 392 DLRQFKKPLNVRTGLPTP--FPGT--------------------------DCCFSPDDKLILTGTS-------------- 429 (641)
T ss_pred eccccccchhhhcCCCcc--CCCC--------------------------ccccCCCceEEEeccc--------------
Confidence 9998754 5555443322 1223 3445555544443221
Q ss_pred eeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccC
Q 037120 363 VSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKEN 442 (489)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (489)
+.-+...+.+++||..+- +.++.+.
T Consensus 430 ------------------------------------~~~~~~~g~L~f~d~~t~----------d~v~ki~--------- 454 (641)
T KOG0772|consen 430 ------------------------------------APNGMTAGTLFFFDRMTL----------DTVYKID--------- 454 (641)
T ss_pred ------------------------------------ccCCCCCceEEEEeccce----------eeEEEec---------
Confidence 111234457889998877 6676665
Q ss_pred CcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccccccccccc
Q 037120 443 RFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCTSDSML 487 (489)
Q Consensus 443 ~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~~~~~~ 487 (489)
--...|..+.|||.-+.|.+|+.||.+.|+-...+|+|..|+
T Consensus 455 ---i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~S~RGak~ 496 (641)
T KOG0772|consen 455 ---ISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNESIRGAKL 496 (641)
T ss_pred ---CCCceEEEEeecchhhheeeecCCCceEEEECccccccchhh
Confidence 336779999999999999999999999999999999998875
No 36
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.9e-30 Score=245.10 Aligned_cols=300 Identities=13% Similarity=0.205 Sum_probs=228.8
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
|......|..++|+|...+++++-..|.|++||..-..+.. . +..|.++ |..++|+|..+ ++
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~--------r------FdeHdGp---VRgv~FH~~qp-lF 66 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID--------R------FDEHDGP---VRGVDFHPTQP-LF 66 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh--------h------hhccCCc---cceeeecCCCC-eE
Confidence 33344568999999999999999999999999998755444 1 2446666 77899999976 99
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++|++| -.|+||+.. .+.++.++.||-+-|..+.|++.-+ .|+++|.|.+|+||+..+.+ |+..
T Consensus 67 VSGGDD-ykIkVWnYk------------~rrclftL~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~--~iav 130 (1202)
T KOG0292|consen 67 VSGGDD-YKIKVWNYK------------TRRCLFTLLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRK--CIAV 130 (1202)
T ss_pred EecCCc-cEEEEEecc------------cceehhhhccccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCc--eEEE
Confidence 999988 999999992 3345666799999999999999999 99999999999999999988 8888
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec-CCccCCCCeeEEEeCCCCccee----ecccccee
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN-HKEVCHLPLTSLKLASMLEKIG----TLKAQSKI 326 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~i~----~~~~~~~~ 326 (489)
+.+|...|.|.+|+|....+++++-|.+||+||+...+.-..-.+ ..+. .+... -++..++ -.+.....
T Consensus 131 ltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~----~~~~~--~~~dLfg~~DaVVK~VLEG 204 (1202)
T KOG0292|consen 131 LTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQ----MRGQQ--GNSDLFGQTDAVVKHVLEG 204 (1202)
T ss_pred EecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhh----hhccc--cchhhcCCcCeeeeeeecc
Confidence 999999999999999999999999999999999976543111111 0000 11111 1112222 24455667
Q ss_pred eccceeEEEeCCCCCeEEEEEecCC---ce----EE--EEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcE
Q 037120 327 VSQEIHSIDLDPSCSYQLAFHLDDG---WS----GV--LDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSI 397 (489)
Q Consensus 327 ~~~~i~~~~~~p~~~~~~~~~~~~~---w~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (489)
|...|..++|.|.-+.+++++-|.. |. +. .++..||.+.+.+. .|.+. ..
T Consensus 205 HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssv--lfhp~-------------------q~ 263 (1202)
T KOG0292|consen 205 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSV--LFHPH-------------------QD 263 (1202)
T ss_pred cccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceE--EecCc-------------------cc
Confidence 8889999999998776665543332 31 22 23445666666554 33333 67
Q ss_pred EEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEE
Q 037120 398 YAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLV 474 (489)
Q Consensus 398 ~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v 474 (489)
++++.|+|++|+|||+... ..++.+. .-.+.-..+|.||..+.+|+|-..|.+.+
T Consensus 264 lIlSnsEDksirVwDm~kR----------t~v~tfr------------rendRFW~laahP~lNLfAAgHDsGm~VF 318 (1202)
T KOG0292|consen 264 LILSNSEDKSIRVWDMTKR----------TSVQTFR------------RENDRFWILAAHPELNLFAAGHDSGMIVF 318 (1202)
T ss_pred eeEecCCCccEEEEecccc----------cceeeee------------ccCCeEEEEEecCCcceeeeecCCceEEE
Confidence 8999999999999999988 7777776 55678999999999999999888777766
No 37
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2e-28 Score=258.13 Aligned_cols=308 Identities=13% Similarity=0.190 Sum_probs=200.0
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
..+...|.+++|+|+|++||+|+.|+.|+|||.......... ...+.... .+... |.+++|++.....|+
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~------~~~~~~~~-~~~~~---v~~l~~~~~~~~~la 549 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD------IHYPVVEL-ASRSK---LSGICWNSYIKSQVA 549 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc------cccceEEe-cccCc---eeeEEeccCCCCEEE
Confidence 345667999999999999999999999999998652111100 00010111 12223 888999987666889
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec-CCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA-VNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
+++.| |+|++||+... .. ...+.+|...|++++|+| ++. +|++|+.|++|++||++++. ++..
T Consensus 550 s~~~D-g~v~lWd~~~~-----~~-------~~~~~~H~~~V~~l~~~p~~~~-~L~Sgs~Dg~v~iWd~~~~~--~~~~ 613 (793)
T PLN00181 550 SSNFE-GVVQVWDVARS-----QL-------VTEMKEHEKRVWSIDYSSADPT-LLASGSDDGSVKLWSINQGV--SIGT 613 (793)
T ss_pred EEeCC-CeEEEEECCCC-----eE-------EEEecCCCCCEEEEEEcCCCCC-EEEEEcCCCEEEEEECCCCc--EEEE
Confidence 99988 99999999322 11 222378999999999997 455 99999999999999999876 4544
Q ss_pred ccCCCCceeEEEEe-ecCCEEEEEeCCCeEEEEEcCCCc-ccceeecCCccCCCCeeEEEeCCCCcceeeccccceeecc
Q 037120 252 STGSHGTLNSIQLH-AENQIIFAAGKHGSIYLWDLRGGR-TSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQ 329 (489)
Q Consensus 252 ~~~h~~~v~~~~~~-p~~~~l~~~~~dg~i~lwd~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~ 329 (489)
+.. ...|.++.|+ +++.++++|+.||.|++||+++.+ .+..+.+|... |.++.|. ++..+.+......+
T Consensus 614 ~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~----V~~v~f~-~~~~lvs~s~D~~i--- 684 (793)
T PLN00181 614 IKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKT----VSYVRFV-DSSTLVSSSTDNTL--- 684 (793)
T ss_pred Eec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCC----EEEEEEe-CCCEEEEEECCCEE---
Confidence 444 3679999995 578999999999999999999876 36677788766 8888886 44433321111000
Q ss_pred ceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEE
Q 037120 330 EIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIH 409 (489)
Q Consensus 330 ~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~ 409 (489)
.++.+. ... ....+ ..+..+.+|...+ ..++|.++ +.++++|+.|+.|+
T Consensus 685 kiWd~~--~~~-------~~~~~-~~l~~~~gh~~~i--------------------~~v~~s~~-~~~lasgs~D~~v~ 733 (793)
T PLN00181 685 KLWDLS--MSI-------SGINE-TPLHSFMGHTNVK--------------------NFVGLSVS-DGYIATGSETNEVF 733 (793)
T ss_pred EEEeCC--CCc-------cccCC-cceEEEcCCCCCe--------------------eEEEEcCC-CCEEEEEeCCCEEE
Confidence 001100 000 00000 0111222222111 12344554 56899999999999
Q ss_pred EEeccCCCCCCee-eccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 410 LLDFFPGSSSPSH-VDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 410 vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
+|+.........+ ......+..+ ....|...|.+++|+|++.++++|+.||.|.||.
T Consensus 734 iw~~~~~~~~~s~~~~~~~~~~~~----------~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 734 VYHKAFPMPVLSYKFKTIDPVSGL----------EVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EEECCCCCceEEEecccCCccccc----------ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9997654100000 0000000000 0125677899999999999999999999999995
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=4.4e-30 Score=223.13 Aligned_cols=247 Identities=13% Similarity=0.218 Sum_probs=196.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+.+|...|.|+.|+. +.|++|+.|.+|+|||++++++.. + +.+|... |..+.|+.. ++
T Consensus 233 L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~--------t------lihHcea---VLhlrf~ng---~m 290 (499)
T KOG0281|consen 233 LTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN--------T------LIHHCEA---VLHLRFSNG---YM 290 (499)
T ss_pred hhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh--------H------Hhhhcce---eEEEEEeCC---EE
Confidence 456777899999965 599999999999999999976665 2 2456666 888999864 88
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| .+|.+||+.... .+...+ .+.||...|+.+.|. .+ ++++++.|.+|++|++.+.+ ++++
T Consensus 291 vtcSkD-rsiaVWdm~sps-----~it~rr----VLvGHrAaVNvVdfd--~k-yIVsASgDRTikvW~~st~e--fvRt 355 (499)
T KOG0281|consen 291 VTCSKD-RSIAVWDMASPT-----DITLRR----VLVGHRAAVNVVDFD--DK-YIVSASGDRTIKVWSTSTCE--FVRT 355 (499)
T ss_pred EEecCC-ceeEEEeccCch-----HHHHHH----HHhhhhhheeeeccc--cc-eEEEecCCceEEEEecccee--eehh
Confidence 999998 999999994332 112222 248999999999985 55 99999999999999999988 8999
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
+.+|...|.|+.+ .++++++|++|.+|++||+..|.++..+++|++- |.++.|.
T Consensus 356 l~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeL----vRciRFd-------------------- 409 (499)
T KOG0281|consen 356 LNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL----VRCIRFD-------------------- 409 (499)
T ss_pred hhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHh----hhheeec--------------------
Confidence 9999999999988 5899999999999999999999999999999977 6666543
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
...+++|+.||+|+||
T Consensus 410 ----------------------------------------------------------------~krIVSGaYDGkikvW 425 (499)
T KOG0281|consen 410 ----------------------------------------------------------------NKRIVSGAYDGKIKVW 425 (499)
T ss_pred ----------------------------------------------------------------CceeeeccccceEEEE
Confidence 4468889999999999
Q ss_pred eccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 412 DFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
|+....-.. .....-.+..+. .|++.|..+.| +.-.|++++.|.+|.||....-
T Consensus 426 dl~aaldpr-a~~~~~Cl~~lv------------~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 426 DLQAALDPR-APASTLCLRTLV------------EHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred ecccccCCc-ccccchHHHhhh------------hccceeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence 998771000 000001112222 79999999999 5678999999999999976543
No 39
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.5e-29 Score=237.38 Aligned_cols=309 Identities=14% Similarity=0.216 Sum_probs=242.4
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCC-EEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQD-EVAC 173 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~-~l~s 173 (489)
|+.+|.-++|+|.|.+||+|+.||.++|||+....+.. .+ .||.+. |.++.|+|+-.. +|++
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th--------~f------kG~gGv---Vssl~F~~~~~~~lL~s 166 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH--------SF------KGHGGV---VSSLLFHPHWNRWLLAS 166 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE--------Ee------cCCCce---EEEEEeCCccchhheee
Confidence 66779999999999999999999999999999966665 23 444444 999999998544 5667
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc-------
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL------- 246 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~------- 246 (489)
|..| +++++||++... .+.+.+..|...|++++|.+++. .+++++.|..|.+||+.+-+.
T Consensus 167 g~~D-~~v~vwnl~~~~-----------tcl~~~~~H~S~vtsL~~~~d~~-~~ls~~RDkvi~vwd~~~~~~l~~lp~y 233 (775)
T KOG0319|consen 167 GATD-GTVRVWNLNDKR-----------TCLHTMILHKSAVTSLAFSEDSL-ELLSVGRDKVIIVWDLVQYKKLKTLPLY 233 (775)
T ss_pred cCCC-ceEEEEEcccCc-----------hHHHHHHhhhhheeeeeeccCCc-eEEEeccCcEEEEeehhhhhhhheechh
Confidence 7766 999999994321 13444577999999999999876 777777777777777321000
Q ss_pred --------------------------------------------------------------------------------
Q 037120 247 -------------------------------------------------------------------------------- 246 (489)
Q Consensus 247 -------------------------------------------------------------------------------- 246 (489)
T Consensus 234 e~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l 313 (775)
T KOG0319|consen 234 ESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL 313 (775)
T ss_pred hheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEcccc
Confidence
Q ss_pred --------------------------------Cc----------eeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEE
Q 037120 247 --------------------------------PS----------LELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWD 284 (489)
Q Consensus 247 --------------------------------~~----------~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd 284 (489)
+. -+.+.+|+..|.++....+|.++++|+.|.++++|-
T Consensus 314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr 393 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWR 393 (775)
T ss_pred EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEE
Confidence 00 012336777788888667788999999999999998
Q ss_pred cCCCcc----cceeecCCccCCCCeeEEEeCCCCcc-eeecc-------------------------ccceeeccceeEE
Q 037120 285 LRGGRT----SAPFHNHKEVCHLPLTSLKLASMLEK-IGTLK-------------------------AQSKIVSQEIHSI 334 (489)
Q Consensus 285 ~~~~~~----~~~~~~~~~~~~~~v~~l~~~~~~~~-i~~~~-------------------------~~~~~~~~~i~~~ 334 (489)
+.++.. +....+|... |.+++++..+.. +++.. .....|..+|.++
T Consensus 394 ~~~~~~~~~~~a~~~gH~~s----vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~V 469 (775)
T KOG0319|consen 394 LNNNCSKSLCVAQANGHTNS----VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCV 469 (775)
T ss_pred ecCCcchhhhhhhhcccccc----cceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccce
Confidence 854332 6667789888 999999877643 32211 1122357789999
Q ss_pred EeCCCCCeEEEEEecCC---ce----EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCc
Q 037120 335 DLDPSCSYQLAFHLDDG---WS----GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHG 407 (489)
Q Consensus 335 ~~~p~~~~~~~~~~~~~---w~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~ 407 (489)
+++|+++.+++++.|.+ |. .+..+..||...+.|. .|+.. +..++|+|.|++
T Consensus 470 aia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V--~Fs~~-------------------dq~laT~SgD~T 528 (775)
T KOG0319|consen 470 AIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCV--SFSKN-------------------DQLLATCSGDKT 528 (775)
T ss_pred EecCCCceEEecccccceeeecccCceEEEEeeCCccceEEE--Eeccc-------------------cceeEeccCCce
Confidence 99999999999999987 63 7778888998888777 66665 789999999999
Q ss_pred EEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 408 IHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 408 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
|+||.+.+. .+++.++ ||...|.-+.|-.++..|+||+.||.|+||.-|.+
T Consensus 529 vKIW~is~f----------SClkT~e------------GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 529 VKIWSISTF----------SCLKTFE------------GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred EEEEEeccc----------eeeeeec------------CccceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence 999999999 9999999 99999999999999999999999999999987764
No 40
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=3.6e-29 Score=214.41 Aligned_cols=299 Identities=14% Similarity=0.230 Sum_probs=209.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCccccc--CCCCCCCCCccccccc---ccCCCCCCceeEEEeeCC
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQC--NGTLPGVGLKEDQSKH---LLHIPLPQQLDAVRWNLA 166 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~--~~~~~~~g~~~~~~~~---~~h~~~~~~V~~v~~~~~ 166 (489)
+..|...+++-+|++||.++|+|+.|..|+|+|++..-... .+..++ ++...|+.. --|..+ |.++.|+|.
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~-~~qa~hPvIRTlYDH~de---vn~l~FHPr 183 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISG-DTQARHPVIRTLYDHVDE---VNDLDFHPR 183 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccC-CcccCCceEeehhhccCc---ccceeecch
Confidence 44566779999999999999999999999999998432111 111010 011122222 226666 889999998
Q ss_pred CCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc
Q 037120 167 NQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL 246 (489)
Q Consensus 167 ~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 246 (489)
.. +|++++.| ++|++||......+ +.++..+ ....|.+|.|+|.|. +|+.|..-.++++||+++-+
T Consensus 184 e~-ILiS~srD-~tvKlFDfsK~saK--rA~K~~q--------d~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~Q- 249 (430)
T KOG0640|consen 184 ET-ILISGSRD-NTVKLFDFSKTSAK--RAFKVFQ--------DTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQ- 249 (430)
T ss_pred hh-eEEeccCC-CeEEEEecccHHHH--HHHHHhh--------ccceeeeEeecCCCc-eEEEecCCCceeEEecccee-
Confidence 75 99999999 99999999533221 1111111 234899999999999 99999999999999999865
Q ss_pred Cceee---ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee-cCCccCCCCeeEEEeCCCCcceeeccc
Q 037120 247 PSLEL---STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH-NHKEVCHLPLTSLKLASMLEKIGTLKA 322 (489)
Q Consensus 247 ~~~~~---~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~-~~~~~~~~~v~~l~~~~~~~~i~~~~~ 322 (489)
|.-. ..+|++.|+++.+++++++.++++.||.|+|||=-+++|+.++. .|.+. .|.+.
T Consensus 250 -cfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gs---evcSa-------------- 311 (430)
T KOG0640|consen 250 -CFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGS---EVCSA-------------- 311 (430)
T ss_pred -EeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCc---eeeeE--------------
Confidence 4322 23899999999999999999999999999999999999988886 44432 24444
Q ss_pred cceeeccceeEEEeCCCCCeEEEEEecCC---ce----EEEEeeccce---eeecCCCCCCcCCCCccccccCCCcceee
Q 037120 323 QSKIVSQEIHSIDLDPSCSYQLAFHLDDG---WS----GVLDVYNSRV---SHVHCPPPAWLSDSNNSADQLHLRKPSWL 392 (489)
Q Consensus 323 ~~~~~~~~i~~~~~~p~~~~~~~~~~~~~---w~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (489)
.|..+++|++..+.|.. |. +.+..|.|.- ...+.....|...
T Consensus 312 ------------~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNht---------------- 363 (430)
T KOG0640|consen 312 ------------VFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHT---------------- 363 (430)
T ss_pred ------------EEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCc----------------
Confidence 45555555555555544 31 4455554431 1112222233333
Q ss_pred cCCcEEEEee-cCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcce
Q 037120 393 STNSIYAVGS-SSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSS 471 (489)
Q Consensus 393 ~~~~~~l~sg-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~ 471 (489)
..|++.- -..+.+.-||..+. .....+. +||.+.|..+.-+|.++.+++||.|-.
T Consensus 364 ---EdyVl~pDEas~slcsWdaRta----------dr~~l~s-----------lgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 364 ---EDYVLFPDEASNSLCSWDARTA----------DRVALLS-----------LGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred ---cceEEccccccCceeeccccch----------hhhhhcc-----------cCCCCCceEEEeCCCCCceeeecccce
Confidence 4444442 23358999999887 3333322 389999999999999999999999999
Q ss_pred eEEEecc
Q 037120 472 LLVVSQK 478 (489)
Q Consensus 472 i~v~~~~ 478 (489)
+++|-.+
T Consensus 420 aRFWyrr 426 (430)
T KOG0640|consen 420 ARFWYRR 426 (430)
T ss_pred eeeeeec
Confidence 9999765
No 41
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=9.7e-29 Score=244.63 Aligned_cols=336 Identities=11% Similarity=0.116 Sum_probs=230.3
Q ss_pred ceeEEEECCCCcEEEEEe--cCCeEEEEeCCCcccccCCCCCCCCCccccc-ccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 98 GISALDFDCKGIYLVSAT--RSGCLTVHDFESLYYQCNGTLPGVGLKEDQS-KHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~--~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~-~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
.|.+++.+|+|..+|||+ .||.++||+.+..-....+... .+..+. ...-|.+. |.|+.|+|+++ .|++|
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~---~l~k~l~~m~~h~~s---v~CVR~S~dG~-~lAsG 87 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNE---NLPKHLCTMDDHDGS---VNCVRFSPDGS-YLASG 87 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhc---ccchhheeeccccCc---eeEEEECCCCC-eEeec
Confidence 399999999999999999 8999999998763211111000 011111 11225566 99999999997 88999
Q ss_pred ecCCCEEEEEEeccCCCC------CceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 175 STRSNVVSIYDIGYISDE------PVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
++| +.|.||+....... ......+.......+.+|...|.+++|+|++. +|++++.|++|.|||.++.+ .
T Consensus 88 SDD-~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~--~ 163 (942)
T KOG0973|consen 88 SDD-RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFE--L 163 (942)
T ss_pred cCc-ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccce--e
Confidence 988 99999998631000 00111122234455689999999999999999 99999999999999999986 7
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccC--CCCeeEEEeCCCCcceeecccccee
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVC--HLPLTSLKLASMLEKIGTLKAQSKI 326 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~i~~~~~~~~~ 326 (489)
++.+.+|.+.|-.+.|+|-|+|+++-+.|++|++|.+.+....+.+..+-+.. ..-+..+.|+|||.++++...
T Consensus 164 ~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA---- 239 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA---- 239 (942)
T ss_pred eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh----
Confidence 88889999999999999999999999999999999988877766665443311 234789999999999976331
Q ss_pred eccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCC---CCCCcCCCCccccccCCCcceeecCCc-EEEEee
Q 037120 327 VSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCP---PPAWLSDSNNSADQLHLRKPSWLSTNS-IYAVGS 402 (489)
Q Consensus 327 ~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sg 402 (489)
+. .+...+..-..++|..-.+. -||...+.+. |.-|..... . - -.--++.. ..+++|
T Consensus 240 ---------~n-~~~~~~~IieR~tWk~~~~L-vGH~~p~evvrFnP~lfe~~~~-n---g----~~~~~~~~y~i~Avg 300 (942)
T KOG0973|consen 240 ---------VN-GGKSTIAIIERGTWKVDKDL-VGHSAPVEVVRFNPKLFERNNK-N---G----TSTQPNCYYCIAAVG 300 (942)
T ss_pred ---------cc-CCcceeEEEecCCceeeeee-ecCCCceEEEEeChHHhccccc-c---C----CccCCCcceEEEEEe
Confidence 11 22223333344667522222 2333222221 111111110 0 0 00000001 368899
Q ss_pred cCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccccc
Q 037120 403 SSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCT 482 (489)
Q Consensus 403 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~ 482 (489)
|.|++|-||..... +.+..... -....|.+++|+|+|-.|.++|.||+|.++..+.+.+
T Consensus 301 SqDrSlSVW~T~~~----------RPl~vi~~-----------lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 301 SQDRSLSVWNTALP----------RPLFVIHN-----------LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred cCCccEEEEecCCC----------Cchhhhhh-----------hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 99999999998655 33333220 2356899999999999999999999999999988888
Q ss_pred cccccc
Q 037120 483 SDSMLE 488 (489)
Q Consensus 483 ~~~~~~ 488 (489)
.+++.+
T Consensus 360 G~~ls~ 365 (942)
T KOG0973|consen 360 GVALSE 365 (942)
T ss_pred CcccCh
Confidence 777654
No 42
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.2e-29 Score=231.83 Aligned_cols=244 Identities=12% Similarity=0.124 Sum_probs=206.1
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
|.-.+..|++..|-+.-+++++|++|..|+||++++.+.+. .++.|..+ |.|++.+|..+ .+
T Consensus 51 feV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~--------~FeAH~Dy---------IR~iavHPt~P-~v 112 (794)
T KOG0276|consen 51 FEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK--------TFEAHSDY---------IRSIAVHPTLP-YV 112 (794)
T ss_pred eeecccchhhheeeeccceEEEecCCceEEEEecccceeeE--------Eeeccccc---------eeeeeecCCCC-eE
Confidence 44455679999999999999999999999999999977666 46666666 99999999987 77
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
+++++| -+|++||.. .... +..++.||+.-|.+++|+|.+++.|++++-|++|+||.+.+.. +..+
T Consensus 113 LtsSDD-m~iKlW~we-------~~wa----~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~--~nfT 178 (794)
T KOG0276|consen 113 LTSSDD-MTIKLWDWE-------NEWA----CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH--PNFT 178 (794)
T ss_pred EecCCc-cEEEEeecc-------Ccee----eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC--Ccee
Confidence 777777 999999992 2222 3334499999999999999999999999999999999998866 6667
Q ss_pred ccCCCCceeEEEEeecC--CEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeecc
Q 037120 252 STGSHGTLNSIQLHAEN--QIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQ 329 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~--~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~ 329 (489)
+.+|+..|+|+.+-+-| +++++|+.|.+|+|||..+-.|+.++++|... |..+.|+|.
T Consensus 179 l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N----vs~v~fhp~---------------- 238 (794)
T KOG0276|consen 179 LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN----VSFVFFHPE---------------- 238 (794)
T ss_pred eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc----ceEEEecCC----------------
Confidence 88999999999998744 79999999999999999999999999999977 777776653
Q ss_pred ceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEE
Q 037120 330 EIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIH 409 (489)
Q Consensus 330 ~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~ 409 (489)
-.++++||+||++|
T Consensus 239 ------------------------------------------------------------------lpiiisgsEDGTvr 252 (794)
T KOG0276|consen 239 ------------------------------------------------------------------LPIIISGSEDGTVR 252 (794)
T ss_pred ------------------------------------------------------------------CcEEEEecCCccEE
Confidence 23578899999999
Q ss_pred EEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEE
Q 037120 410 LLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 410 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~ 475 (489)
||+-.+- +....+. ---+.|.|++.++.+..|+.|..+|.+.|=
T Consensus 253 iWhs~Ty----------~lE~tLn------------~gleRvW~I~~~k~~~~i~vG~Deg~i~v~ 296 (794)
T KOG0276|consen 253 IWNSKTY----------KLEKTLN------------YGLERVWCIAAHKGDGKIAVGFDEGSVTVK 296 (794)
T ss_pred EecCcce----------ehhhhhh------------cCCceEEEEeecCCCCeEEEeccCCcEEEE
Confidence 9998776 4444444 334689999999999999999999999883
No 43
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1e-29 Score=225.39 Aligned_cols=187 Identities=14% Similarity=0.284 Sum_probs=159.8
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCccccccccc-CCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLL-HIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~-h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..|...|+++.|+++|.++++|..+|.|++|+..-..... ... |... |++++|+|.. ..
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~---------------~~ahh~ea---IRdlafSpnD-sk 194 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI---------------IQAHHAEA---IRDLAFSPND-SK 194 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH---------------hhHhhhhh---hheeccCCCC-ce
Confidence 46677889999999999999999999999999876521111 122 2244 9999999965 58
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
++++++| |+|+|||......+ .. +.||.-.|.+++|+|.-. +|+++|.|..|++||.++++ |+-
T Consensus 195 F~t~SdD-g~ikiWdf~~~kee--------~v----L~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~--cl~ 258 (464)
T KOG0284|consen 195 FLTCSDD-GTIKIWDFRMPKEE--------RV----LRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGS--CLA 258 (464)
T ss_pred eEEecCC-CeEEEEeccCCchh--------he----eccCCCCcceeccCCccc-eeEEccCCceeEeecCCCcc--hhh
Confidence 8899988 99999999544322 22 278999999999999988 99999999999999999998 888
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
.+..|+..|..+.|+|++++|+++|.|..++++|+|+.+.+..+.+|+.. |+++.|+|-..-+
T Consensus 259 tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd----v~~~~WhP~~~~l 321 (464)
T KOG0284|consen 259 TLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD----VTSLTWHPLNESL 321 (464)
T ss_pred hhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhh----heeeccccccccc
Confidence 88899999999999999999999999999999999998999999999988 9999999966443
No 44
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3e-27 Score=203.94 Aligned_cols=292 Identities=17% Similarity=0.190 Sum_probs=203.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
|......|.++.|+++|.+|++++.|-+++|||..++..... .+ ...++|..++|-.....++
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t----------------i~-skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT----------------IN-SKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE----------------ee-cccccccEEEEecCCceEE
Confidence 333445699999999999999999999999999998655542 11 1123377888876655455
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
.+....|.+|+.-++.. -+..+. +.||...|++|+.+|-+. .|++++.|++|++||+|..+ |...
T Consensus 73 ~sStk~d~tIryLsl~d--------NkylRY----F~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~--cqg~ 137 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHD--------NKYLRY----FPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKK--CQGL 137 (311)
T ss_pred EccCCCCCceEEEEeec--------CceEEE----cCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCC--CceE
Confidence 54443348999999932 222344 499999999999999997 99999999999999999766 4333
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc--cceeecCCccCCCCeeEEEeCCCCcceeeccccceeecc
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQ 329 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~ 329 (489)
+. ...-..++|+|.|-+++++...+.|+|||+|.... ..++.-.. ....
T Consensus 138 l~--~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~---------------------------~~~~ 188 (311)
T KOG1446|consen 138 LN--LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD---------------------------NDEA 188 (311)
T ss_pred Ee--cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC---------------------------CCcc
Confidence 32 23345689999999988888777999999998532 22222110 1223
Q ss_pred ceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEE
Q 037120 330 EIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIH 409 (489)
Q Consensus 330 ~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~ 409 (489)
+...+.|+|+|++++..+. ++|..+++.++|.+...+.. ..+.. ...-..+|.|+ +.++++|+.||+|+
T Consensus 189 ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~G~~~~tfs~------~~~~~---~~~~~a~ftPd-s~Fvl~gs~dg~i~ 257 (311)
T KOG1446|consen 189 EWTDLEFSPDGKSILLSTN-ASFIYLLDAFDGTVKSTFSG------YPNAG---NLPLSATFTPD-SKFVLSGSDDGTIH 257 (311)
T ss_pred ceeeeEEcCCCCEEEEEeC-CCcEEEEEccCCcEeeeEee------ccCCC---CcceeEEECCC-CcEEEEecCCCcEE
Confidence 4456677777777776553 34556777777765442221 11000 00011334444 78999999999999
Q ss_pred EEeccCCCCCCeeeccCcccchhhHhhhhcccCCccc-CCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 410 LLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVP-LSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 410 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
+|++.++ ..+..+. + +.+++.++-|.|...++||++ ..+.+|..+.
T Consensus 258 vw~~~tg----------~~v~~~~------------~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~ 304 (311)
T KOG1446|consen 258 VWNLETG----------KKVAVLR------------GPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDE 304 (311)
T ss_pred EEEcCCC----------cEeeEec------------CCCCCCccccccCCceeeeeecC--ceEEEEeccc
Confidence 9999999 6766665 5 788999999999999988865 5677776654
No 45
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=9.8e-28 Score=201.64 Aligned_cols=295 Identities=14% Similarity=0.123 Sum_probs=202.4
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|+..++.+.|+.+|++|.+++.|.++.||-..+++..- + +.||++. |.|++.+-+.. .+
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG--------t------y~GHtGa---vW~~Did~~s~-~l 67 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG--------T------YDGHTGA---VWCCDIDWDSK-HL 67 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee--------e------ecCCCce---EEEEEecCCcc-ee
Confidence 45588889999999999999999999999999776533332 3 3667777 99999988875 78
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-----CCCcEEEEECCCCC-
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-----THGVVNIWDRRVGV- 245 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-----~dg~i~iwd~~~~~- 245 (489)
++|+.| .++++||+..+ +.+.... -..+|..+.|+++|+ +++.+. ..+.|.++|++...
T Consensus 68 iTGSAD-~t~kLWDv~tG-----k~la~~k--------~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~ 132 (327)
T KOG0643|consen 68 ITGSAD-QTAKLWDVETG-----KQLATWK--------TNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSS 132 (327)
T ss_pred eecccc-ceeEEEEcCCC-----cEEEEee--------cCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChh
Confidence 888888 99999999544 3333333 234899999999998 665554 34679999998432
Q ss_pred ----cCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCCcceeec
Q 037120 246 ----LPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASMLEKIGTL 320 (489)
Q Consensus 246 ----~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~ 320 (489)
..++..+..+.+.++.+-|.|-+++|++|..||.|.+||+++|+. +...+.|... |+.+++++|..++.
T Consensus 133 ~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~----Ind~q~s~d~T~Fi-- 206 (327)
T KOG0643|consen 133 DIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSK----INDLQFSRDRTYFI-- 206 (327)
T ss_pred hhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccc----cccccccCCcceEE--
Confidence 113434556778999999999999999999999999999999865 5555556655 77776666665554
Q ss_pred cccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEE
Q 037120 321 KAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAV 400 (489)
Q Consensus 321 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 400 (489)
+.+.|.+ .++++..+..+.+.+.. . .++...+.+|-....+.
T Consensus 207 ------------------------T~s~Dtt-akl~D~~tl~v~Kty~t------e-------~PvN~aaisP~~d~Vil 248 (327)
T KOG0643|consen 207 ------------------------TGSKDTT-AKLVDVRTLEVLKTYTT------E-------RPVNTAAISPLLDHVIL 248 (327)
T ss_pred ------------------------ecccCcc-ceeeeccceeeEEEeee------c-------ccccceecccccceEEe
Confidence 3333322 12333333333332211 1 11223344454577777
Q ss_pred eecCCCcEEEEeccCCCCCC-------eeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeE
Q 037120 401 GSSSDHGIHLLDFFPGSSSP-------SHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLL 473 (489)
Q Consensus 401 sgs~d~~i~vwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~ 473 (489)
+|+.+.. |+.+...+. .|.-+.+++..++ +|-++|++|||||+|...+|||+||.|+
T Consensus 249 gGGqeA~----dVTTT~~r~GKFEArFyh~i~eEEigrvk------------GHFGPINsvAfhPdGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 249 GGGQEAM----DVTTTSTRAGKFEARFYHLIFEEEIGRVK------------GHFGPINSVAFHPDGKSYSSGGEDGYVR 312 (327)
T ss_pred cCCceee----eeeeecccccchhhhHHHHHHHHHhcccc------------ccccCcceeEECCCCcccccCCCCceEE
Confidence 7776643 333321111 1111223444444 9999999999999999999999999999
Q ss_pred EEeccc
Q 037120 474 VVSQKQ 479 (489)
Q Consensus 474 v~~~~~ 479 (489)
|...++
T Consensus 313 ~h~Fd~ 318 (327)
T KOG0643|consen 313 LHHFDS 318 (327)
T ss_pred EEEecc
Confidence 965543
No 46
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.2e-29 Score=217.00 Aligned_cols=262 Identities=15% Similarity=0.188 Sum_probs=198.9
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEE
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLI 228 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 228 (489)
.+|... |+.+-|+|+-. +++++++| ++|++||...+. +...+.||++.|.+|+|+..|+ +++
T Consensus 105 ~g~r~~---vt~v~~hp~~~-~v~~as~d-~tikv~D~~tg~------------~e~~LrGHt~sv~di~~~a~Gk-~l~ 166 (406)
T KOG0295|consen 105 AGHRSS---VTRVIFHPSEA-LVVSASED-ATIKVFDTETGE------------LERSLRGHTDSVFDISFDASGK-YLA 166 (406)
T ss_pred hccccc---eeeeeeccCce-EEEEecCC-ceEEEEEccchh------------hhhhhhccccceeEEEEecCcc-EEE
Confidence 446555 88899999864 78888877 999999994321 1223589999999999999999 999
Q ss_pred EEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEE
Q 037120 229 ASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSL 308 (489)
Q Consensus 229 s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l 308 (489)
+++.|-.+++||..+. ..|++...+|+..|.+++|-|.|.++++++.|.+|+.||+.+|-++++|.+|.+. |..+
T Consensus 167 tcSsDl~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ew----vr~v 241 (406)
T KOG0295|consen 167 TCSSDLSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEW----VRMV 241 (406)
T ss_pred ecCCccchhheeHHHH-HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHh----EEEE
Confidence 9999999999999873 3377788899999999999999999999999999999999999999999999999 9999
Q ss_pred EeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCc
Q 037120 309 KLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRK 388 (489)
Q Consensus 309 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (489)
+.+.||..+++........ ....... ......++|...+.|+ .|.+.... . .+..
T Consensus 242 ~v~~DGti~As~s~dqtl~-----------------vW~~~t~--~~k~~lR~hEh~vEci--~wap~~~~--~--~i~~ 296 (406)
T KOG0295|consen 242 RVNQDGTIIASCSNDQTLR-----------------VWVVATK--QCKAELREHEHPVECI--AWAPESSY--P--SISE 296 (406)
T ss_pred EecCCeeEEEecCCCceEE-----------------EEEeccc--hhhhhhhccccceEEE--EecccccC--c--chhh
Confidence 9999988887532111111 1100000 0112233343333333 22222100 0 0000
Q ss_pred ceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccC
Q 037120 389 PSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTK 468 (489)
Q Consensus 389 ~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~ 468 (489)
..-..+++.+++++|.|++|++||+.++ ..+..+. +|.+.|.+++|||.|++|+|+.+
T Consensus 297 at~~~~~~~~l~s~SrDktIk~wdv~tg----------~cL~tL~------------ghdnwVr~~af~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 297 ATGSTNGGQVLGSGSRDKTIKIWDVSTG----------MCLFTLV------------GHDNWVRGVAFSPGGKYILSCAD 354 (406)
T ss_pred ccCCCCCccEEEeecccceEEEEeccCC----------eEEEEEe------------cccceeeeeEEcCCCeEEEEEec
Confidence 0011224789999999999999999999 8888888 99999999999999999999999
Q ss_pred cceeEEEecccc
Q 037120 469 NSSLLVVSQKQQ 480 (489)
Q Consensus 469 dg~i~v~~~~~~ 480 (489)
|++++||+-+.+
T Consensus 355 Dktlrvwdl~~~ 366 (406)
T KOG0295|consen 355 DKTLRVWDLKNL 366 (406)
T ss_pred CCcEEEEEeccc
Confidence 999999987653
No 47
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8e-28 Score=232.41 Aligned_cols=265 Identities=17% Similarity=0.173 Sum_probs=174.1
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccc-----------------------cC-C---------------
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQ-----------------------CN-G--------------- 134 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~-----------------------~~-~--------------- 134 (489)
+|..+|.++.||+||+|||+|+.||.|+||.+...+.. .. +
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 67778999999999999999999999999987651000 00 0
Q ss_pred -----CCCCCC--CcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeec
Q 037120 135 -----TLPGVG--LKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVG 207 (489)
Q Consensus 135 -----~~~~~g--~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 207 (489)
++..+. ...|...+.||+.. |..+.|+.++ +|++++.| .+|++|++. ....|..
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~D---ILDlSWSKn~--fLLSSSMD-KTVRLWh~~-----~~~CL~~-------- 405 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTAD---ILDLSWSKNN--FLLSSSMD-KTVRLWHPG-----RKECLKV-------- 405 (712)
T ss_pred CccccCCCccccccccchhhhhccchh---heecccccCC--eeEecccc-ccEEeecCC-----CcceeeE--------
Confidence 000000 01223345778888 8889999874 89999999 999999993 2233332
Q ss_pred CCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 208 SDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 208 ~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
-.|.+-|+||+|+|.+.++|++|+-||.|+||++...+ ++... .-..-|++++|.|+|++.++|+.+|.+++|+...
T Consensus 406 F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 406 FSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK--VVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEG 482 (712)
T ss_pred EecCCeeEEEEecccCCCcEeecccccceEEeecCcCe--eEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccC
Confidence 33899999999999988899999999999999998765 33222 3347899999999999999999999999999998
Q ss_pred CcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCe-EEEEEecCCceEEEEeeccceeee
Q 037120 288 GRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSY-QLAFHLDDGWSGVLDVYNSRVSHV 366 (489)
Q Consensus 288 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~-~~~~~~~~~w~~~~~~~~~~~~~~ 366 (489)
.+....+.-+... ..+.....|+.+.|.|.... +++.+.|.. .++++..+-.+...
T Consensus 483 lk~~~~~~I~~~~----------------------~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSr-IRI~d~~~~~lv~K 539 (712)
T KOG0283|consen 483 LKLVSDFHIRLHN----------------------KKKKQGKRITGLQFFPGDPDEVLVTSNDSR-IRIYDGRDKDLVHK 539 (712)
T ss_pred CeEEEeeeEeecc----------------------CccccCceeeeeEecCCCCCeEEEecCCCc-eEEEeccchhhhhh
Confidence 7654333311100 00111224566666655543 444444432 23333311111111
Q ss_pred cCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEecc
Q 037120 367 HCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFF 414 (489)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~ 414 (489)
+. .+.... ..-...|+. ++.++|+|++|..|+||++.
T Consensus 540 fK---G~~n~~-------SQ~~Asfs~-Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 540 FK---GFRNTS-------SQISASFSS-DGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred hc---ccccCC-------cceeeeEcc-CCCEEEEeecCceEEEEeCC
Confidence 11 111110 001122333 38999999999999999974
No 48
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=3.1e-27 Score=224.47 Aligned_cols=221 Identities=15% Similarity=0.168 Sum_probs=181.1
Q ss_pred ecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEc
Q 037120 206 VGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDL 285 (489)
Q Consensus 206 ~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~ 285 (489)
+..||...|.+++++.+.. .+++|+ .+.+++|+..+.+ |++++. .+.+.+..|-|.++++++|...|.+.+||+
T Consensus 368 ~~~GHR~dVRsl~vS~d~~-~~~Sga-~~SikiWn~~t~k--ciRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSI-LLASGA-GESIKIWNRDTLK--CIRTIT--CGYILASKFVPGDRYIVLGTKNGELQVFDL 441 (888)
T ss_pred eeccchhheeEEEeecCce-eeeecC-CCcEEEEEccCcc--eeEEec--cccEEEEEecCCCceEEEeccCCceEEEEe
Confidence 3468999999999998776 566555 6899999999877 888776 558999999999999999999999999999
Q ss_pred CCCcccceeecCCccCCCCeeEEEeCCCCcceeeccc----------------------------cceeeccceeEEEeC
Q 037120 286 RGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKA----------------------------QSKIVSQEIHSIDLD 337 (489)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~----------------------------~~~~~~~~i~~~~~~ 337 (489)
.+...+.+++.|.+. |.+++.+||+..+.+... ........|.++.+|
T Consensus 442 aS~~l~Eti~AHdga----IWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S 517 (888)
T KOG0306|consen 442 ASASLVETIRAHDGA----IWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS 517 (888)
T ss_pred ehhhhhhhhhccccc----eeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc
Confidence 999999999999999 999999999987732211 011225678999999
Q ss_pred CCCCeEEEEEecCCce-EEEEe------eccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 338 PSCSYQLAFHLDDGWS-GVLDV------YNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 338 p~~~~~~~~~~~~~w~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
||++++++.-++++.. -.++. .-||...+.|. ..+++ +.+++|||.|.+|+|
T Consensus 518 pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~sm--DIS~D-------------------SklivTgSADKnVKi 576 (888)
T KOG0306|consen 518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSM--DISPD-------------------SKLIVTGSADKNVKI 576 (888)
T ss_pred CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEE--eccCC-------------------cCeEEeccCCCceEE
Confidence 9999999999998832 12222 23666666655 44444 889999999999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
|-+.-+ .+-..+- +|.+.|.+|.|-|....+-++|.||.+.-|..++
T Consensus 577 WGLdFG----------DCHKS~f------------AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 577 WGLDFG----------DCHKSFF------------AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK 623 (888)
T ss_pred eccccc----------hhhhhhh------------cccCceeEEEEcccceeEEEecCcceEEeechhh
Confidence 999988 6666666 8999999999999999999999999999996654
No 49
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=2.1e-28 Score=203.73 Aligned_cols=283 Identities=17% Similarity=0.218 Sum_probs=208.6
Q ss_pred cccCCCceeEEEEC---CCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCC
Q 037120 92 RSFGKPGISALDFD---CKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQ 168 (489)
Q Consensus 92 ~~~~~~~V~~~~fs---~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~ 168 (489)
...|...|..++|| |+|-+|++++.||.--+-+-+++.-+. + +.+|.+. |.+...+.+.
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig--------t------feghkga---vw~~~l~~na- 71 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG--------T------FEGHKGA---VWSATLNKNA- 71 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE--------e------eeccCcc---eeeeecCchh-
Confidence 45566779999998 479999999999987766666522221 2 3556666 7778887765
Q ss_pred CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 169 DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 169 ~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
...++++.| -+-+|||.-.+ ..+.. ..|..-|.+++|+.|.+ .|++|+.+..++|||++..+.+.
T Consensus 72 ~~aasaaad-ftakvw~a~tg-----delhs--------f~hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~App 136 (334)
T KOG0278|consen 72 TRAASAAAD-FTAKVWDAVTG-----DELHS--------FEHKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKAPP 136 (334)
T ss_pred hhhhhhccc-chhhhhhhhhh-----hhhhh--------hhhhheeeeEEecccch-hhhccchHHHhhhhhccCCCCCc
Confidence 367777777 89999998433 22222 34788999999999988 99999999999999999887664
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeec
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVS 328 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~ 328 (489)
. .+.+|.+.|..+.|....+.+++.+.|++||+||.+++..++++.- .. +|+++.++++|.++.... .
T Consensus 137 ~-E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s----~VtSlEvs~dG~ilTia~------g 204 (334)
T KOG0278|consen 137 K-EISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NS----PVTSLEVSQDGRILTIAY------G 204 (334)
T ss_pred h-hhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CC----CCcceeeccCCCEEEEec------C
Confidence 4 5679999999999999999999998899999999999998888774 22 388888888887764210 0
Q ss_pred cceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcE
Q 037120 329 QEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGI 408 (489)
Q Consensus 329 ~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i 408 (489)
.++.| | +.......+-+..|... ...+..|+ ..++|+|++|..+
T Consensus 205 ---ssV~F---------------w----daksf~~lKs~k~P~nV-------------~SASL~P~-k~~fVaGged~~~ 248 (334)
T KOG0278|consen 205 ---SSVKF---------------W----DAKSFGLLKSYKMPCNV-------------ESASLHPK-KEFFVAGGEDFKV 248 (334)
T ss_pred ---ceeEE---------------e----ccccccceeeccCcccc-------------ccccccCC-CceEEecCcceEE
Confidence 11111 1 11111111111111110 11122344 4677788999999
Q ss_pred EEEeccCCCCCCeeeccCcccchh-hHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 409 HLLDFFPGSSSPSHVDYNEDIESL-SERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 409 ~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
+.||+.++ +.+... + +|.++|.||.|+|+|...|+||+||+|++|-.
T Consensus 249 ~kfDy~Tg----------eEi~~~nk------------gh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 249 YKFDYNTG----------EEIGSYNK------------GHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred EEEeccCC----------ceeeeccc------------CCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 99999999 777664 5 99999999999999999999999999999953
No 50
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.4e-27 Score=215.15 Aligned_cols=242 Identities=21% Similarity=0.262 Sum_probs=194.4
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..-...|.++.|-.||++||+|...|.|+|||..+..... . +..|... |..+.|+|+...++
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR--------~------~~ah~ap---v~~~~f~~~d~t~l 126 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR--------Q------LYAHQAP---VHVTKFSPQDNTML 126 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH--------H------HhhccCc---eeEEEecccCCeEE
Confidence 44445679999999999999999999999999966533332 1 2446666 88899999988788
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++|++| +.+++||+... .+ ...+.+|++.|.+.+|+|...++++|||.||.|++||+|+......
T Consensus 127 ~s~sDd-~v~k~~d~s~a-----~v-------~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~-- 191 (487)
T KOG0310|consen 127 VSGSDD-KVVKYWDLSTA-----YV-------QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV-- 191 (487)
T ss_pred EecCCC-ceEEEEEcCCc-----EE-------EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE--
Confidence 888877 99999999322 11 2234899999999999999998999999999999999998652223
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
...|..+|.++.+-|.|..++++|. ..|++||+-+|.. +..+..|... |+|+++..+
T Consensus 192 elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~Kt----VTcL~l~s~----------------- 249 (487)
T KOG0310|consen 192 ELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKT----VTCLRLASD----------------- 249 (487)
T ss_pred EecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccce----EEEEEeecC-----------------
Confidence 3388999999999999998888765 5899999996554 5555568777 888764422
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
+..|++||-|+.+++
T Consensus 250 -----------------------------------------------------------------~~rLlS~sLD~~VKV 264 (487)
T KOG0310|consen 250 -----------------------------------------------------------------STRLLSGSLDRHVKV 264 (487)
T ss_pred -----------------------------------------------------------------CceEeecccccceEE
Confidence 345778899999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEE
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~ 475 (489)
||+.+- +.+..+. ..++|.+++.+|++..++.|..||.+.+=
T Consensus 265 fd~t~~----------Kvv~s~~-------------~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 265 FDTTNY----------KVVHSWK-------------YPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred EEccce----------EEEEeee-------------cccceeeEEecCCCceEEEecccceeeee
Confidence 997766 6666654 67899999999999999999999999885
No 51
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=7.9e-27 Score=205.37 Aligned_cols=285 Identities=15% Similarity=0.245 Sum_probs=205.6
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC--CCCEEEEEec
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA--NQDEVACAST 176 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~--~~~~l~s~~~ 176 (489)
|.++... +..+++|+.||.++|||....... ...+|.+. |.+++|.-. ....|++++.
T Consensus 108 VSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~---------------~~~Ght~~---ik~v~~v~~n~~~~~fvsas~ 167 (423)
T KOG0313|consen 108 VSSVKGA--SKWILTGSYDGTSRIWDLKGKSIK---------------TIVGHTGP---IKSVAWVIKNSSSCLFVSASM 167 (423)
T ss_pred hhhhccc--CceEEEeecCCeeEEEecCCceEE---------------EEecCCcc---eeeeEEEecCCccceEEEecC
Confidence 6666665 689999999999999999873222 23667777 888888533 2347999999
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCC------------
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVG------------ 244 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~------------ 244 (489)
| .++++|..+.+. ..+...... .||...|-+++..+++. .+++|+.|.+|+||+..+.
T Consensus 168 D-qtl~Lw~~~~~~----~~~~~~~~~----~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 168 D-QTLRLWKWNVGE----NKVKALKVC----RGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred C-ceEEEEEecCch----hhhhHHhHh----cccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhh
Confidence 9 999999995432 222223323 69999999999999999 9999999999999993221
Q ss_pred -----------CcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCC
Q 037120 245 -----------VLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 245 -----------~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 313 (489)
....+-.+.+|..+|.++.|++ ...+++++.|.+|+.||+.+++.+.++.+ ... +.++.++|.
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ks----l~~i~~~~~ 311 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKS----LNCISYSPL 311 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-Ccc----eeEeecccc
Confidence 0112335669999999999988 66789999999999999999998777765 333 788887776
Q ss_pred CcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeec
Q 037120 314 LEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLS 393 (489)
Q Consensus 314 ~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (489)
...+++......+. -++|... .-+.+...+.||.+- .. .+.|+|
T Consensus 312 ~~Ll~~gssdr~ir-------l~DPR~~---------~gs~v~~s~~gH~nw--------Vs------------svkwsp 355 (423)
T KOG0313|consen 312 SKLLASGSSDRHIR-------LWDPRTG---------DGSVVSQSLIGHKNW--------VS------------SVKWSP 355 (423)
T ss_pred cceeeecCCCCcee-------ecCCCCC---------CCceeEEeeecchhh--------hh------------heecCC
Confidence 66665322111100 0111100 001223333444432 22 256777
Q ss_pred CCcEEEEeecCCCcEEEEeccCCCCCCeeeccCc-ccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCccee
Q 037120 394 TNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNE-DIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSL 472 (489)
Q Consensus 394 ~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i 472 (489)
.....+++||.|+++++||+++. . .+..+. +|.+.|.++.|. .+..|++||.|..|
T Consensus 356 ~~~~~~~S~S~D~t~klWDvRS~----------k~plydI~------------~h~DKvl~vdW~-~~~~IvSGGaD~~l 412 (423)
T KOG0313|consen 356 TNEFQLVSGSYDNTVKLWDVRST----------KAPLYDIA------------GHNDKVLSVDWN-EGGLIVSGGADNKL 412 (423)
T ss_pred CCceEEEEEecCCeEEEEEeccC----------CCcceeec------------cCCceEEEEecc-CCceEEeccCcceE
Confidence 78999999999999999999987 4 666777 999999999997 46689999999999
Q ss_pred EEEecc
Q 037120 473 LVVSQK 478 (489)
Q Consensus 473 ~v~~~~ 478 (489)
+++...
T Consensus 413 ~i~~~~ 418 (423)
T KOG0313|consen 413 RIFKGS 418 (423)
T ss_pred EEeccc
Confidence 998643
No 52
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=6.3e-28 Score=214.40 Aligned_cols=287 Identities=13% Similarity=0.177 Sum_probs=201.2
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|..+.|-++...|++|+.|..|++|+.....+... +.+ .+..+. |++++|.+++..+|
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~------~tL------aGs~g~---it~~d~d~~~~~~i 235 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELI------STL------AGSLGN---ITSIDFDSDNKHVI 235 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhh------hhh------hccCCC---cceeeecCCCceEE
Confidence 566777899999999989999999999999999987442221 122 222233 99999999987555
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
+ ++.| +.+++|++... ...+++.||++.|+++.|..... .+++|+.|.+|++||+.... |.+.
T Consensus 236 A-as~d-~~~r~Wnvd~~------------r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~--C~kt 298 (459)
T KOG0288|consen 236 A-ASND-KNLRLWNVDSL------------RLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAY--CSKT 298 (459)
T ss_pred e-ecCC-Cceeeeeccch------------hhhhhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhh--eecc
Confidence 5 4445 99999999322 13445699999999999997766 69999999999999999855 6655
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
.. ....++.|+.+ ...+++|..|++||+||.++..+...++.+. . |++|..++++
T Consensus 299 ~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~----vtSl~ls~~g----------------- 353 (459)
T KOG0288|consen 299 VL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-R----VTSLDLSMDG----------------- 353 (459)
T ss_pred cc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-c----eeeEeeccCC-----------------
Confidence 43 23455666655 5567788889999999999988877777643 3 6666655555
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
..+++++.|+.. .+++..+..+.+.+... .+... .....+.|+|+ +.|+++||.||.|+||
T Consensus 354 ---------~~lLsssRDdtl-~viDlRt~eI~~~~sA~-g~k~a-------sDwtrvvfSpd-~~YvaAGS~dgsv~iW 414 (459)
T KOG0288|consen 354 ---------LELLSSSRDDTL-KVIDLRTKEIRQTFSAE-GFKCA-------SDWTRVVFSPD-GSYVAAGSADGSVYIW 414 (459)
T ss_pred ---------eEEeeecCCCce-eeeecccccEEEEeecc-ccccc-------cccceeEECCC-CceeeeccCCCcEEEE
Confidence 444444333331 13333322222222211 11111 11223455555 7789999999999999
Q ss_pred eccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCC-ceEEEEeeCCCCeEEeccCcceeEEE
Q 037120 412 DFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSE-GVTACVTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~va~~p~~~~i~sgs~dg~i~v~ 475 (489)
++.++ ++...+.. .+.. .|++++|+|.|..+++++.++.+.+|
T Consensus 415 ~v~tg----------KlE~~l~~-----------s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 415 SVFTG----------KLEKVLSL-----------STSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EccCc----------eEEEEecc-----------CCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 99999 66655551 2333 79999999999999999999999998
No 53
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=6.5e-26 Score=221.72 Aligned_cols=204 Identities=13% Similarity=0.089 Sum_probs=149.3
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCccc-ccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKED-QSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~-~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
.|+...+++++..+++++.+.....|+...+..+.... ..|.... ...+.+|... |.+++|+|....+|++++.
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~--~~G~~~~~~~~l~GH~~~---V~~v~fsP~d~~~LaSgS~ 96 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHT--DYGKLASNPPILLGQEGP---IIDVAFNPFDPQKLFTASE 96 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeecc--ccccCCCCCceEeCCCCC---EEEEEEcCCCCCEEEEEeC
Confidence 35566677787777888888888888765533221110 0112221 2235678877 9999999944458999998
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
| ++|++||+...... .........+.+|...|.+++|+|++.++|++++.|++|+|||+++++ .+..+.+|.
T Consensus 97 D-gtIkIWdi~~~~~~-----~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~--~~~~l~~h~ 168 (493)
T PTZ00421 97 D-GTIMGWGIPEEGLT-----QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK--AVEVIKCHS 168 (493)
T ss_pred C-CEEEEEecCCCccc-----cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe--EEEEEcCCC
Confidence 8 99999999543211 001112334588999999999999875599999999999999999876 566677899
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
..|.+++|+|++.+|++++.|++|++||+++++.+..+.+|.+. .+..+.|.+++..+
T Consensus 169 ~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~---~~~~~~w~~~~~~i 226 (493)
T PTZ00421 169 DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA---KSQRCLWAKRKDLI 226 (493)
T ss_pred CceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC---cceEEEEcCCCCeE
Confidence 99999999999999999999999999999999888888887654 13455666665444
No 54
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=1.4e-26 Score=192.78 Aligned_cols=263 Identities=13% Similarity=0.145 Sum_probs=187.7
Q ss_pred CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC
Q 037120 168 QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP 247 (489)
Q Consensus 168 ~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 247 (489)
.-+|++++.| .+|++|...++ ...... ......|+.+...|++. .|++++ ...|++||+++++..
T Consensus 10 ~viLvsA~YD-hTIRfWqa~tG-----~C~rTi-------qh~dsqVNrLeiTpdk~-~LAaa~-~qhvRlyD~~S~np~ 74 (311)
T KOG0315|consen 10 PVILVSAGYD-HTIRFWQALTG-----ICSRTI-------QHPDSQVNRLEITPDKK-DLAAAG-NQHVRLYDLNSNNPN 74 (311)
T ss_pred ceEEEeccCc-ceeeeeehhcC-----eEEEEE-------ecCccceeeEEEcCCcc-hhhhcc-CCeeEEEEccCCCCC
Confidence 4589999999 99999999443 222222 33456899999999998 777777 578999999998764
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeecccc----
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQ---- 323 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~---- 323 (489)
.+..+.+|..-|+++.|..+|+.+++||.||+++|||+|...+.+.++. .. ||+++..+|....+.+....
T Consensus 75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~-~s----pVn~vvlhpnQteLis~dqsg~ir 149 (311)
T KOG0315|consen 75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH-NS----PVNTVVLHPNQTELISGDQSGNIR 149 (311)
T ss_pred ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC-CC----CcceEEecCCcceEEeecCCCcEE
Confidence 6778889999999999999999999999999999999999776655553 43 49999999987655221111
Q ss_pred -------------ceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcce
Q 037120 324 -------------SKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPS 390 (489)
Q Consensus 324 -------------~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (489)
..+....|.++.+.|+|..+++....+. --++++....... .+.+-....+.....-. |
T Consensus 150 vWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~-cyvW~l~~~~~~s------~l~P~~k~~ah~~~il~-C 221 (311)
T KOG0315|consen 150 VWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN-CYVWRLLNHQTAS------ELEPVHKFQAHNGHILR-C 221 (311)
T ss_pred EEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCcc-EEEEEccCCCccc------cceEhhheecccceEEE-E
Confidence 1122467899999999999888776665 1122222211100 00011011111111111 2
Q ss_pred eecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcc
Q 037120 391 WLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNS 470 (489)
Q Consensus 391 ~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg 470 (489)
-++.+.+||+++|.|.+++||+..... +....++ +|...|.+++|+.++.+|++|+.|+
T Consensus 222 ~lSPd~k~lat~ssdktv~iwn~~~~~---------kle~~l~------------gh~rWvWdc~FS~dg~YlvTassd~ 280 (311)
T KOG0315|consen 222 LLSPDVKYLATCSSDKTVKIWNTDDFF---------KLELVLT------------GHQRWVWDCAFSADGEYLVTASSDH 280 (311)
T ss_pred EECCCCcEEEeecCCceEEEEecCCce---------eeEEEee------------cCCceEEeeeeccCccEEEecCCCC
Confidence 233348899999999999999987650 2223445 8999999999999999999999999
Q ss_pred eeEEEeccc
Q 037120 471 SLLVVSQKQ 479 (489)
Q Consensus 471 ~i~v~~~~~ 479 (489)
..++|.-..
T Consensus 281 ~~rlW~~~~ 289 (311)
T KOG0315|consen 281 TARLWDLSA 289 (311)
T ss_pred ceeeccccc
Confidence 999997544
No 55
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1e-26 Score=219.13 Aligned_cols=239 Identities=15% Similarity=0.191 Sum_probs=190.5
Q ss_pred CCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCccccccccc-CCCCCCceeEEEeeCCCCCEEEEE
Q 037120 96 KPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLL-HIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~-h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
+..|+++.|+++|.+||+|..+|.|.|||..+...... + .+ |... |.+++|+. ..+.+|
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~--------~------~~~h~~r---vg~laW~~---~~lssG 276 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT--------L------RGSHASR---VGSLAWNS---SVLSSG 276 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc--------c------cCCcCce---eEEEeccC---ceEEEe
Confidence 56799999999999999999999999999988444432 1 22 4444 99999993 488999
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
+.| +.|..+|++..... . . .+.+|...|..++|++++. ++++|+.|+.+.|||....+ ....+..
T Consensus 277 sr~-~~I~~~dvR~~~~~----~---~----~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~--p~~~~~~ 341 (484)
T KOG0305|consen 277 SRD-GKILNHDVRISQHV----V---S----TLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPE--PKFTFTE 341 (484)
T ss_pred cCC-CcEEEEEEecchhh----h---h----hhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCcc--ccEEEec
Confidence 998 99999999643211 1 1 1488999999999999999 99999999999999996544 4556779
Q ss_pred CCCceeEEEEeecCC-EEEEEeC--CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 255 SHGTLNSIQLHAENQ-IIFAAGK--HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 255 h~~~v~~~~~~p~~~-~l~~~~~--dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
|.+.|.+++|+|... +|++||. |++|++||..++..+..+.. ... |.+|.|++..+.+.
T Consensus 342 H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQ----VcsL~Wsk~~kEi~------------- 403 (484)
T KOG0305|consen 342 HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQ----VCSLIWSKKYKELL------------- 403 (484)
T ss_pred cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCc----eeeEEEcCCCCEEE-------------
Confidence 999999999999654 5566644 99999999999887766653 222 67776665443222
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
..-|-.++.|.||
T Consensus 404 -------------------------------------------------------------------sthG~s~n~i~lw 416 (484)
T KOG0305|consen 404 -------------------------------------------------------------------STHGYSENQITLW 416 (484)
T ss_pred -------------------------------------------------------------------EecCCCCCcEEEE
Confidence 1113356689999
Q ss_pred eccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 412 DFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
++.+. ..+..+. +|...|..++++|++..|++|+.|.++.+|.
T Consensus 417 ~~ps~----------~~~~~l~------------gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 417 KYPSM----------KLVAELL------------GHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred ecccc----------ceeeeec------------CCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 99988 7777777 9999999999999999999999999999984
No 56
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=189.79 Aligned_cols=247 Identities=13% Similarity=0.227 Sum_probs=188.7
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEE
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLI 228 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 228 (489)
.+|... |..++|+|....+|++++.| +.|++|+...+ ..+.... ..-.+|+..|.+++|+|.|+ +|+
T Consensus 11 ~gh~~r---~W~~awhp~~g~ilAscg~D-k~vriw~~~~~-----~s~~ck~---vld~~hkrsVRsvAwsp~g~-~La 77 (312)
T KOG0645|consen 11 SGHKDR---VWSVAWHPGKGVILASCGTD-KAVRIWSTSSG-----DSWTCKT---VLDDGHKRSVRSVAWSPHGR-YLA 77 (312)
T ss_pred cCCCCc---EEEEEeccCCceEEEeecCC-ceEEEEecCCC-----CcEEEEE---eccccchheeeeeeecCCCc-EEE
Confidence 456665 88899999833489999988 99999999431 1111111 11267999999999999999 999
Q ss_pred EEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCc---ccceeecCCccCCCCe
Q 037120 229 ASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR---TSAPFHNHKEVCHLPL 305 (489)
Q Consensus 229 s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~---~~~~~~~~~~~~~~~v 305 (489)
++|.|.++.||.-..++..++..+.+|+..|.|++|+++|.+|++++.|..|-||.+..+. ++..++.|..- |
T Consensus 78 ~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD----V 153 (312)
T KOG0645|consen 78 SASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD----V 153 (312)
T ss_pred EeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc----c
Confidence 9999999999988877777888899999999999999999999999999999999998544 47788888866 9
Q ss_pred eEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEe-cCCceEEEEeeccceeeecCCCCCCcCCCCcccccc
Q 037120 306 TSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHL-DDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQL 384 (489)
Q Consensus 306 ~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (489)
..+.|+|....+.+..-. +...+.... ++.|. +.....+|...+.+. .|.+.
T Consensus 154 K~V~WHPt~dlL~S~SYD----------------nTIk~~~~~~dddW~-c~~tl~g~~~TVW~~--~F~~~-------- 206 (312)
T KOG0645|consen 154 KHVIWHPTEDLLFSCSYD----------------NTIKVYRDEDDDDWE-CVQTLDGHENTVWSL--AFDNI-------- 206 (312)
T ss_pred cEEEEcCCcceeEEeccC----------------CeEEEEeecCCCCee-EEEEecCccceEEEE--EecCC--------
Confidence 999999988777653211 111111112 23354 344455665555544 45554
Q ss_pred CCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEE
Q 037120 385 HLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIV 464 (489)
Q Consensus 385 ~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~ 464 (489)
+..++++++|++++||-..+. ... -|+..+..++|. ...||
T Consensus 207 -----------G~rl~s~sdD~tv~Iw~~~~~--------------~~~------------~~sr~~Y~v~W~--~~~Ia 247 (312)
T KOG0645|consen 207 -----------GSRLVSCSDDGTVSIWRLYTD--------------LSG------------MHSRALYDVPWD--NGVIA 247 (312)
T ss_pred -----------CceEEEecCCcceEeeeeccC--------------cch------------hcccceEeeeec--ccceE
Confidence 678999999999999987655 111 478899999998 67899
Q ss_pred eccCcceeEEEecc
Q 037120 465 AGTKNSSLLVVSQK 478 (489)
Q Consensus 465 sgs~dg~i~v~~~~ 478 (489)
|++.|+.|+||-..
T Consensus 248 S~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 248 SGGGDDAIRLFKES 261 (312)
T ss_pred eccCCCEEEEEEec
Confidence 99999999999766
No 57
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.3e-25 Score=220.52 Aligned_cols=266 Identities=12% Similarity=0.092 Sum_probs=178.0
Q ss_pred EecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCC
Q 037120 114 ATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEP 193 (489)
Q Consensus 114 g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~ 193 (489)
|+.++.|++|+..... ....+.+|... |.+++|+|+...+|++|+.| ++|+|||+.......
T Consensus 50 GG~~gvI~L~~~~r~~--------------~v~~L~gH~~~---V~~lafsP~~~~lLASgS~D-gtIrIWDi~t~~~~~ 111 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP--------------PVIKLKGHTSS---ILDLQFNPCFSEILASGSED-LTIRVWEIPHNDESV 111 (568)
T ss_pred CCceeEEEeeecCCCc--------------eEEEEcCCCCC---EEEEEEcCCCCCEEEEEeCC-CeEEEEECCCCCccc
Confidence 6678999999987622 22234567666 99999999865699999988 999999995432111
Q ss_pred ceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEE
Q 037120 194 VEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFA 273 (489)
Q Consensus 194 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~ 273 (489)
.. .......+.+|...|.+++|+|++..+|++++.|++|+|||+++++ ....+ .|...|.+++|+|+|.+|++
T Consensus 112 -~~---i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~--~~~~i-~~~~~V~SlswspdG~lLat 184 (568)
T PTZ00420 112 -KE---IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK--RAFQI-NMPKKLSSLKWNIKGNLLSG 184 (568)
T ss_pred -cc---cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc--EEEEE-ecCCcEEEEEECCCCCEEEE
Confidence 00 1112223478999999999999998567899999999999999876 33233 35678999999999999999
Q ss_pred EeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCc-
Q 037120 274 AGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGW- 352 (489)
Q Consensus 274 ~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w- 352 (489)
++.|+.|+|||+++++.+..+.+|.+. +....+ ....|++++.++++++.++..
T Consensus 185 ~s~D~~IrIwD~Rsg~~i~tl~gH~g~----~~s~~v---------------------~~~~fs~d~~~IlTtG~d~~~~ 239 (568)
T PTZ00420 185 TCVGKHMHIIDPRKQEIASSFHIHDGG----KNTKNI---------------------WIDGLGGDDNYILSTGFSKNNM 239 (568)
T ss_pred EecCCEEEEEECCCCcEEEEEecccCC----ceeEEE---------------------EeeeEcCCCCEEEEEEcCCCCc
Confidence 999999999999999988888888765 333221 112345566666666555421
Q ss_pred --eEEEEeec-cceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCccc
Q 037120 353 --SGVLDVYN-SRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDI 429 (489)
Q Consensus 353 --~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~ 429 (489)
..+++... +........ +.. ...-.+.|.++.+.++++|+.|++|++|++..+ ..
T Consensus 240 R~VkLWDlr~~~~pl~~~~l------d~~-----~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~----------~~- 297 (568)
T PTZ00420 240 REMKLWDLKNTTSALVTMSI------DNA-----SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG----------SI- 297 (568)
T ss_pred cEEEEEECCCCCCceEEEEe------cCC-----ccceEEeeeCCCCCEEEEEECCCeEEEEEccCC----------cE-
Confidence 23444432 111110000 000 001123444555888999999999999999766 21
Q ss_pred chhhHhhhhcccCCcccCCCceEEEEeeCCCC
Q 037120 430 ESLSERTKLKKENRFVPLSEGVTACVTHPLNN 461 (489)
Q Consensus 430 ~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~ 461 (489)
..+. . ..+..++.+++|.|...
T Consensus 298 ~~l~---------~-~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 298 RKVN---------E-YKSCSPFRSFGFLPKQI 319 (568)
T ss_pred Eeec---------c-cccCCCccceEEccccc
Confidence 1111 0 03567778888888754
No 58
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.3e-25 Score=183.01 Aligned_cols=253 Identities=14% Similarity=0.208 Sum_probs=193.1
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC---CCC
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA---NQD 169 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~---~~~ 169 (489)
..|+..|.|.+|+|+|++||+|+.|.+|++..++...+.. .-...++..|.+. |..++|-.+ +..
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~---------~g~dle~nmhdgt---irdl~fld~~~s~~~ 153 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA---------TGHDLEFNMHDGT---IRDLAFLDDPESGGA 153 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccc---------cCcceeeeecCCc---eeeeEEecCCCcCce
Confidence 3445569999999999999999999999999888755554 2334556668888 888999643 334
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
+|++++..|..|.+=|. +...+ .+.+.+|++-|.++ ++-++- +|++|+.|.+|++||+|... ++
T Consensus 154 il~s~gagdc~iy~tdc--~~g~~----------~~a~sghtghilal-yswn~~-m~~sgsqdktirfwdlrv~~--~v 217 (350)
T KOG0641|consen 154 ILASAGAGDCKIYITDC--GRGQG----------FHALSGHTGHILAL-YSWNGA-MFASGSQDKTIRFWDLRVNS--CV 217 (350)
T ss_pred EEEecCCCcceEEEeec--CCCCc----------ceeecCCcccEEEE-EEecCc-EEEccCCCceEEEEeeeccc--ee
Confidence 77777644456666665 22221 23348999999887 455677 99999999999999999876 55
Q ss_pred eecc--CC-----CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccc
Q 037120 250 ELST--GS-----HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKA 322 (489)
Q Consensus 250 ~~~~--~h-----~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~ 322 (489)
..+. .| ++.|.+++..|.|++|++|-.|....+||+|.++.++.+..|... |+++.|+|.
T Consensus 218 ~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsad----ir~vrfsp~--------- 284 (350)
T KOG0641|consen 218 NTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSAD----IRCVRFSPG--------- 284 (350)
T ss_pred eeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccc----eeEEEeCCC---------
Confidence 5443 22 357899999999999999999999999999999999999888766 777665542
Q ss_pred cceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEee
Q 037120 323 QSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGS 402 (489)
Q Consensus 323 ~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 402 (489)
..|+++|
T Consensus 285 -------------------------------------------------------------------------a~yllt~ 291 (350)
T KOG0641|consen 285 -------------------------------------------------------------------------AHYLLTC 291 (350)
T ss_pred -------------------------------------------------------------------------ceEEEEe
Confidence 5578889
Q ss_pred cCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 403 SSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 403 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
|.|..|++-|+... ....+..+-+ ..|.+.+..+-|||..-.+++.+.|.++.+|.-
T Consensus 292 syd~~ikltdlqgd--------la~el~~~vv----------~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 292 SYDMKIKLTDLQGD--------LAHELPIMVV----------AEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred cccceEEEeecccc--------hhhcCceEEE----------EeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 99999999999754 1122222111 169999999999999999999999999999974
No 59
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=6.4e-26 Score=222.72 Aligned_cols=177 Identities=23% Similarity=0.386 Sum_probs=146.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCC-cccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFES-LYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~-~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..+..+|++++|+|+|+++++|+.|++|+|||+.. ..+.. .+ .+|... |++++|+|++ .+
T Consensus 199 l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~--------~l------~gH~~~---v~~~~f~p~g-~~ 260 (456)
T KOG0266|consen 199 LSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLK--------TL------KGHSTY---VTSVAFSPDG-NL 260 (456)
T ss_pred ccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEE--------Ee------cCCCCc---eEEEEecCCC-CE
Confidence 355777899999999999999999999999999944 23333 23 455555 9999999999 69
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
+++|+.| ++|+|||++.+ .+...+.+|...|++++|++++. +|++++.|+.|++||+.++...+.+
T Consensus 261 i~Sgs~D-~tvriWd~~~~------------~~~~~l~~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~ 326 (456)
T KOG0266|consen 261 LVSGSDD-GTVRIWDVRTG------------ECVRKLKGHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCLK 326 (456)
T ss_pred EEEecCC-CcEEEEeccCC------------eEEEeeeccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCceeeee
Confidence 9999998 99999999432 12233488999999999999999 9999999999999999997632234
Q ss_pred eccCCCCc--eeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCcc
Q 037120 251 LSTGSHGT--LNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEV 300 (489)
Q Consensus 251 ~~~~h~~~--v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~ 300 (489)
.+..+... +++++|+|++.++++++.|+.+++||++.+.++..+.+|...
T Consensus 327 ~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~ 378 (456)
T KOG0266|consen 327 LLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL 378 (456)
T ss_pred cccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc
Confidence 44455544 999999999999999999999999999999998888887754
No 60
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=3.4e-26 Score=199.83 Aligned_cols=237 Identities=16% Similarity=0.216 Sum_probs=179.4
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|.|+++.|.++ .|++|+.| ++|+|||+..+ .+..++.||-..|..+++++-.+ ++++++.|+.|+
T Consensus 154 Vr~vavdP~n~-wf~tgs~D-rtikIwDlatg------------~LkltltGhi~~vr~vavS~rHp-YlFs~gedk~VK 218 (460)
T KOG0285|consen 154 VRSVAVDPGNE-WFATGSAD-RTIKIWDLATG------------QLKLTLTGHIETVRGVAVSKRHP-YLFSAGEDKQVK 218 (460)
T ss_pred EEEEeeCCCce-eEEecCCC-ceeEEEEcccC------------eEEEeecchhheeeeeeecccCc-eEEEecCCCeeE
Confidence 99999999975 89999998 99999999432 12334589999999999999999 999999999999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
.||+...+ .++.+.+|-+.|.|++.+|.-+.|++|+.|.++|+||+|+...+..+.+|... |.++.+.|....
T Consensus 219 CwDLe~nk--vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~----V~~V~~~~~dpq- 291 (460)
T KOG0285|consen 219 CWDLEYNK--VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP----VASVMCQPTDPQ- 291 (460)
T ss_pred EEechhhh--hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCc----ceeEEeecCCCc-
Confidence 99999877 78888899999999999999999999999999999999998889999999977 888876654433
Q ss_pred eeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcE
Q 037120 318 GTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSI 397 (489)
Q Consensus 318 ~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (489)
+++++.|.+ .+++++..|........ . ...++..+..|. ..
T Consensus 292 -------------------------vit~S~D~t-vrlWDl~agkt~~tlt~------h------kksvral~lhP~-e~ 332 (460)
T KOG0285|consen 292 -------------------------VITGSHDST-VRLWDLRAGKTMITLTH------H------KKSVRALCLHPK-EN 332 (460)
T ss_pred -------------------------eEEecCCce-EEEeeeccCceeEeeec------c------cceeeEEecCCc-hh
Confidence 333333333 12233332221110000 0 001111122222 44
Q ss_pred EEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 398 YAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 398 ~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
.++++|.| .|+-|++..+ +.++.++ +|..-|++++...+ .++++|+++|.|.+|.-
T Consensus 333 ~fASas~d-nik~w~~p~g----------~f~~nls------------gh~~iintl~~nsD-~v~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 333 LFASASPD-NIKQWKLPEG----------EFLQNLS------------GHNAIINTLSVNSD-GVLVSGGDNGSIMFWDW 388 (460)
T ss_pred hhhccCCc-cceeccCCcc----------chhhccc------------cccceeeeeeeccC-ceEEEcCCceEEEEEec
Confidence 55666655 6899999999 7888888 99999999999854 47899999999999975
Q ss_pred cc
Q 037120 478 KQ 479 (489)
Q Consensus 478 ~~ 479 (489)
|.
T Consensus 389 ks 390 (460)
T KOG0285|consen 389 KS 390 (460)
T ss_pred Cc
Confidence 54
No 61
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=3.6e-25 Score=188.76 Aligned_cols=316 Identities=16% Similarity=0.216 Sum_probs=211.8
Q ss_pred cCCCceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccc--cC-CCCCCceeEEEeeCCCCC
Q 037120 94 FGKPGISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHL--LH-IPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 94 ~~~~~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~--~h-~~~~~~V~~v~~~~~~~~ 169 (489)
+|..+|+++.+++. |+|+++|+.||.|.|||++........ |....+.... -| ..+.+.|.++.|-|-..+
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s-----~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS-----GLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc-----cceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence 45567999999875 899999999999999999874311110 0111111111 12 233445999999999899
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC--cEEEEEeCCCcEEEEECCCCCcC
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT--SRLIASDTHGVVNIWDRRVGVLP 247 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~ 247 (489)
++.+++-| .+++|||.++. +....|. +. +.|.+-+|+|-.. .++++|..|-.|++.|+.++.
T Consensus 116 mFtssSFD-htlKVWDtnTl--------Q~a~~F~--me---~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-- 179 (397)
T KOG4283|consen 116 MFTSSSFD-HTLKVWDTNTL--------QEAVDFK--ME---GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-- 179 (397)
T ss_pred eeeccccc-ceEEEeecccc--------eeeEEee--cC---ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc--
Confidence 99999999 99999999432 2222221 12 3777778887543 267788899999999999998
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCC-cccceeecCCccCCCCeeEEEeCCCCcceeeccccce
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGG-RTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSK 325 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~ 325 (489)
+...+.+|.+.|.++.|+|...++++.+. ||.|++||+|.. .+...+..|+..+ .|+ ++ ...
T Consensus 180 ~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~-~p~--------------~~-~n~ 243 (397)
T KOG4283|consen 180 FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKR-PPI--------------LK-TNT 243 (397)
T ss_pred ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCcc-Ccc--------------cc-ccc
Confidence 77888999999999999999998766655 999999999975 5566666665320 111 11 122
Q ss_pred eeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCC
Q 037120 326 IVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSD 405 (489)
Q Consensus 326 ~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d 405 (489)
.+...+.++++..++.+++.++.++.. ++++...|.-+-....+.+-.......+. .. ..+ ...++.--.|
T Consensus 244 ah~gkvngla~tSd~~~l~~~gtd~r~-r~wn~~~G~ntl~~~g~~~~n~~~~~~~~------~~-~~~-s~vfv~~p~~ 314 (397)
T KOG4283|consen 244 AHYGKVNGLAWTSDARYLASCGTDDRI-RVWNMESGRNTLREFGPIIHNQTTSFAVH------IQ-SMD-SDVFVLFPND 314 (397)
T ss_pred cccceeeeeeecccchhhhhccCccce-EEeecccCcccccccccccccccccceEE------Ee-ecc-cceEEEEecC
Confidence 345567778888888888888777762 12333333222111110000000000000 00 111 2233334466
Q ss_pred CcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 406 HGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 406 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
+.+.++++..+ +.+..+. +|-..|++.++-|+-...-+|..|+.+..|+.
T Consensus 315 ~~lall~~~sg----------s~ir~l~------------~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 315 GSLALLNLLEG----------SFVRRLS------------THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred CeEEEEEccCc----------eEEEeee------------cccceeeEEeecCchhhhhccccCCccccccc
Confidence 88899998888 7777777 88888999999999999999999999999976
No 62
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.3e-25 Score=187.62 Aligned_cols=247 Identities=13% Similarity=0.178 Sum_probs=181.5
Q ss_pred eEEEECCC-CcEEEEEe-------cCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 100 SALDFDCK-GIYLVSAT-------RSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 100 ~~~~fs~~-g~~la~g~-------~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
.++.|||- .++||.++ ..|.+.|.++....-+.. ..+....-++..|+|++...+++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e---------------~~s~d~~D~LfdV~Wse~~e~~~ 76 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE---------------CQSYDTEDGLFDVAWSENHENQV 76 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE---------------EEeeecccceeEeeecCCCcceE
Confidence 46678874 23444332 268889988864211110 01111112277899999999999
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| |++++||+... .. +... +.+|...|.++.|++.....++++|-|++|++||...+. .+++
T Consensus 77 ~~a~GD-GSLrl~d~~~~-s~------Pi~~----~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~--Sv~T 142 (311)
T KOG0277|consen 77 IAASGD-GSLRLFDLTMP-SK------PIHK----FKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN--SVQT 142 (311)
T ss_pred EEEecC-ceEEEeccCCC-Cc------chhH----HHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc--ceEe
Confidence 999888 99999997322 12 2333 388999999999999888789999999999999998766 6778
Q ss_pred ccCCCCceeEEEEeecC-CEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 252 STGSHGTLNSIQLHAEN-QIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
+.+|..-|...+|+|.. +.+++++.|+++++||++.......++.|... |.++.|+
T Consensus 143 f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~E----il~cdw~------------------- 199 (311)
T KOG0277|consen 143 FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSE----ILCCDWS------------------- 199 (311)
T ss_pred ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccce----eEeeccc-------------------
Confidence 99999999999999965 45566677999999999975433335555533 3333222
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
. -+ ..++++|+.|+.||+
T Consensus 200 -------k-------------------------------------y~------------------~~vl~Tg~vd~~vr~ 217 (311)
T KOG0277|consen 200 -------K-------------------------------------YN------------------HNVLATGGVDNLVRG 217 (311)
T ss_pred -------c-------------------------------------cC------------------CcEEEecCCCceEEE
Confidence 1 11 567899999999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCC-CeEEeccCcceeEEEeccccc
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLN-NTIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~-~~i~sgs~dg~i~v~~~~~~~ 481 (489)
||+..-. ..+.++. +|.-.|..|+|+|.. ..|||++.|-++++|..+++.
T Consensus 218 wDir~~r---------~pl~eL~------------gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 218 WDIRNLR---------TPLFELN------------GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD 268 (311)
T ss_pred Eehhhcc---------ccceeec------------CCceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence 9998661 3344555 999999999999987 599999999999999887554
No 63
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=4.1e-25 Score=185.36 Aligned_cols=278 Identities=15% Similarity=0.172 Sum_probs=199.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..+...|.+++|+.+|..||+|+.|+++.||+++...... .....+|... |-.++|.|..+.++
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~------------~~~~~gh~~s---vdql~w~~~~~d~~ 80 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK------------ELVYRGHTDS---VDQLCWDPKHPDLF 80 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh------------hhcccCCCcc---hhhheeCCCCCcce
Confidence 44455679999999999999999999999999999853332 2234677777 66699999999999
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| .+|++||++..+.. ..+. .+..=.-+.|+|+|+ +++.++.|..|.+.|.++.+ ....
T Consensus 81 atas~d-k~ir~wd~r~~k~~--~~i~-----------~~~eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~--~~~~ 143 (313)
T KOG1407|consen 81 ATASGD-KTIRIWDIRSGKCT--ARIE-----------TKGENINITWSPDGE-YIAVGNKDDRITFIDARTYK--IVNE 143 (313)
T ss_pred EEecCC-ceEEEEEeccCcEE--EEee-----------ccCcceEEEEcCCCC-EEEEecCcccEEEEEecccc--eeeh
Confidence 999988 99999999654321 1111 112334578999999 99999999999999999865 2322
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
......++-++|+-++..++.....|+|.|......+.+..++.|... ..++.|+|+|++++.
T Consensus 144 -~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~sn----CicI~f~p~GryfA~------------ 206 (313)
T KOG1407|consen 144 -EQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSN----CICIEFDPDGRYFAT------------ 206 (313)
T ss_pred -hcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcc----eEEEEECCCCceEee------------
Confidence 233567888999988888888888999999999998889999998855 666666666666653
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
++.|.-. .++++.. +.|.. ++ +-...++|+++|+-+ +.+|++||+|..|-|=
T Consensus 207 --------------GsADAlv-SLWD~~E-----LiC~R-~i------sRldwpVRTlSFS~d-g~~lASaSEDh~IDIA 258 (313)
T KOG1407|consen 207 --------------GSADALV-SLWDVDE-----LICER-CI------SRLDWPVRTLSFSHD-GRMLASASEDHFIDIA 258 (313)
T ss_pred --------------cccccee-eccChhH-----hhhhe-ee------ccccCceEEEEeccC-cceeeccCccceEEeE
Confidence 3322210 0111100 00000 00 001133455555554 7899999999999999
Q ss_pred eccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCc
Q 037120 412 DFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKN 469 (489)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~d 469 (489)
++.++ ..+.++ ++.++-+.|||||....||-+..|
T Consensus 259 ~vetG----------d~~~eI-------------~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 259 EVETG----------DRVWEI-------------PCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ecccC----------CeEEEe-------------eccCCceeEEecCCCceeeEEecC
Confidence 99999 666555 488999999999999988766543
No 64
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=2.2e-25 Score=218.16 Aligned_cols=240 Identities=20% Similarity=0.270 Sum_probs=199.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|..+|.+++|..-+.+|++|+.|.+++|||..++.|... + .+|... |.++...+. .+
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~--------l------~gh~st---v~~~~~~~~---~~ 304 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS--------L------QGHTSS---VRCLTIDPF---LL 304 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE--------e------cCCCce---EEEEEccCc---eE
Confidence 677888999999998889999999999999999999887763 2 456666 888877654 78
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++|+.| .+|++|++.. ..+...+.+|..+|+++... +. ++++|+.|++|++||+++++ +++.
T Consensus 305 ~sgs~D-~tVkVW~v~n------------~~~l~l~~~h~~~V~~v~~~--~~-~lvsgs~d~~v~VW~~~~~~--cl~s 366 (537)
T KOG0274|consen 305 VSGSRD-NTVKVWDVTN------------GACLNLLRGHTGPVNCVQLD--EP-LLVSGSYDGTVKVWDPRTGK--CLKS 366 (537)
T ss_pred eeccCC-ceEEEEeccC------------cceEEEeccccccEEEEEec--CC-EEEEEecCceEEEEEhhhce--eeee
Confidence 888888 9999999941 12333446699999999987 66 99999999999999999887 9999
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-cccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGG-RTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
+.+|...|.++.+.+. ..+++|+.|++|++||+++. +++.++.+|... +..+.
T Consensus 367 l~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~----v~~l~--------------------- 420 (537)
T KOG0274|consen 367 LSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL----VSSLL--------------------- 420 (537)
T ss_pred ecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc----ccccc---------------------
Confidence 9999999999988766 88999999999999999999 889999888755 21110
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
.. +.++++++.|+.|++
T Consensus 421 --------------------------------------------~~-------------------~~~Lvs~~aD~~Ik~ 437 (537)
T KOG0274|consen 421 --------------------------------------------LR-------------------DNFLVSSSADGTIKL 437 (537)
T ss_pred --------------------------------------------cc-------------------cceeEeccccccEEE
Confidence 01 678999999999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCccc-CCCceEEEEeeCCCCeEEeccCcceeEEEecccccc
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVP-LSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCT 482 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~ 482 (489)
||...+ +.+..++ + |...|.++++. ...+++++.||.+.+|.-+....
T Consensus 438 WD~~~~----------~~~~~~~------------~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 438 WDAEEG----------ECLRTLE------------GRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred eecccC----------ceeeeec------------cCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 999999 8888888 6 67888888886 67899999999999996554443
No 65
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=3.6e-25 Score=189.32 Aligned_cols=261 Identities=14% Similarity=0.199 Sum_probs=180.2
Q ss_pred cccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCC
Q 037120 144 DQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVN 223 (489)
Q Consensus 144 ~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 223 (489)
+.....+|.++ |..+.|+|++. +|++|+.| ..|.+|++...... . ..+.+|+++|..+.|.+++
T Consensus 39 p~m~l~gh~ge---I~~~~F~P~gs-~~aSgG~D-r~I~LWnv~gdceN-------~----~~lkgHsgAVM~l~~~~d~ 102 (338)
T KOG0265|consen 39 PIMLLPGHKGE---IYTIKFHPDGS-CFASGGSD-RAIVLWNVYGDCEN-------F----WVLKGHSGAVMELHGMRDG 102 (338)
T ss_pred hhhhcCCCcce---EEEEEECCCCC-eEeecCCc-ceEEEEeccccccc-------e----eeeccccceeEeeeeccCC
Confidence 33445678888 89999999886 88888888 99999998322111 1 2237999999999999999
Q ss_pred CcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceeecCCccCC
Q 037120 224 TSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEVCH 302 (489)
Q Consensus 224 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~ 302 (489)
. .+++++.|.+|+.||+++++ +.+....|..-|+++.-+.-|..+++.+. |++++|||+|+..++++++. +-.
T Consensus 103 s-~i~S~gtDk~v~~wD~~tG~--~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyq-- 176 (338)
T KOG0265|consen 103 S-HILSCGTDKTVRGWDAETGK--RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQ-- 176 (338)
T ss_pred C-EEEEecCCceEEEEecccce--eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-cee--
Confidence 9 99999999999999999998 77788899999999996666776666555 99999999999877877754 222
Q ss_pred CCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCcccc
Q 037120 303 LPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSAD 382 (489)
Q Consensus 303 ~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (489)
++++.|..++..+.+......+ . .+++-. ....-+..||...+..+ ..+.
T Consensus 177 --ltAv~f~d~s~qv~sggIdn~i---k----vWd~r~------------~d~~~~lsGh~DtIt~l--sls~------- 226 (338)
T KOG0265|consen 177 --LTAVGFKDTSDQVISGGIDNDI---K----VWDLRK------------NDGLYTLSGHADTITGL--SLSR------- 226 (338)
T ss_pred --EEEEEecccccceeeccccCce---e----eecccc------------CcceEEeecccCceeeE--Eecc-------
Confidence 7888887766554331111000 0 112200 01222333433332222 1112
Q ss_pred ccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCe
Q 037120 383 QLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNT 462 (489)
Q Consensus 383 ~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~ 462 (489)
.+.++.+-+.|+++++||+...-++ .+.+..+... .-..+.....++|+|++..
T Consensus 227 ------------~gs~llsnsMd~tvrvwd~rp~~p~------~R~v~if~g~--------~hnfeknlL~cswsp~~~~ 280 (338)
T KOG0265|consen 227 ------------YGSFLLSNSMDNTVRVWDVRPFAPS------QRCVKIFQGH--------IHNFEKNLLKCSWSPNGTK 280 (338)
T ss_pred ------------CCCccccccccceEEEEEecccCCC------CceEEEeecc--------hhhhhhhcceeeccCCCCc
Confidence 2778889999999999999866111 1223333300 0012345688999999999
Q ss_pred EEeccCcceeEEEecccccc
Q 037120 463 IVAGTKNSSLLVVSQKQQCT 482 (489)
Q Consensus 463 i~sgs~dg~i~v~~~~~~~~ 482 (489)
+.+|+.|..+.+|....+.+
T Consensus 281 i~ags~dr~vyvwd~~~r~~ 300 (338)
T KOG0265|consen 281 ITAGSADRFVYVWDTTSRRI 300 (338)
T ss_pred cccccccceEEEeecccccE
Confidence 99999999999998766443
No 66
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=4.4e-25 Score=210.00 Aligned_cols=289 Identities=12% Similarity=0.147 Sum_probs=214.4
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|+..|++++||.+...+++|+ .+.|+||+..+.+|.... ... . +.+..|-|.+. .+
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi--------~~~--y---------~l~~~Fvpgd~-~I 427 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTI--------TCG--Y---------ILASKFVPGDR-YI 427 (888)
T ss_pred eccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEe--------ccc--c---------EEEEEecCCCc-eE
Confidence 566778899999999998888876 568999999998887732 111 3 88899999875 67
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc-----
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL----- 246 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~----- 246 (489)
+.|... |.+.+||+... ..+.. ...|.+.|++++..||+. .++|||.|.+|++||...-..
T Consensus 428 v~G~k~-Gel~vfdlaS~-----~l~Et-------i~AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~ 493 (888)
T KOG0306|consen 428 VLGTKN-GELQVFDLASA-----SLVET-------IRAHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQ 493 (888)
T ss_pred EEeccC-CceEEEEeehh-----hhhhh-------hhccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCccc
Confidence 777777 99999999322 12111 156999999999999999 999999999999999753211
Q ss_pred -Ccee----eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeecc
Q 037120 247 -PSLE----LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLK 321 (489)
Q Consensus 247 -~~~~----~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~ 321 (489)
..+. ....-+..|.|+.++|||++|+++=-|.+|++|=+.+.+-.-.+.+|.-+ |.++..+||...+.+..
T Consensus 494 ~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLP----V~smDIS~DSklivTgS 569 (888)
T KOG0306|consen 494 KKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLP----VLSMDISPDSKLIVTGS 569 (888)
T ss_pred ceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccc----eeEEeccCCcCeEEecc
Confidence 0111 11133578999999999999999888999999999998888888888854 88888888777765432
Q ss_pred ccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEe
Q 037120 322 AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVG 401 (489)
Q Consensus 322 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 401 (489)
.. ..-.|+.+.|..-.+ -+-+|...+. .+-|.|. ..++.+
T Consensus 570 AD---KnVKiWGLdFGDCHK----------------S~fAHdDSvm--------------------~V~F~P~-~~~FFt 609 (888)
T KOG0306|consen 570 AD---KNVKIWGLDFGDCHK----------------SFFAHDDSVM--------------------SVQFLPK-THLFFT 609 (888)
T ss_pred CC---CceEEeccccchhhh----------------hhhcccCcee--------------------EEEEccc-ceeEEE
Confidence 22 222344444411110 0111111111 1223332 677888
Q ss_pred ecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccccc
Q 037120 402 SSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 402 gs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~ 481 (489)
+|.|+.|+-||-..- +.++.+. +|...|.|+|..|+|.+++|+|.|.+|++|..-++-
T Consensus 610 ~gKD~kvKqWDg~kF----------e~iq~L~------------~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 610 CGKDGKVKQWDGEKF----------EEIQKLD------------GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred ecCcceEEeechhhh----------hhheeec------------cchheeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence 899999999999888 8888988 999999999999999999999999999999876643
No 67
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=8.2e-26 Score=204.95 Aligned_cols=251 Identities=15% Similarity=0.209 Sum_probs=180.6
Q ss_pred cccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEE
Q 037120 148 HLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRL 227 (489)
Q Consensus 148 ~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 227 (489)
+.+|+.. |+++.|.|....+|++++.| +.|+||++... ..++.++.+|..+|.+++|+.+|. .|
T Consensus 210 ~~gH~kg---vsai~~fp~~~hLlLS~gmD-~~vklW~vy~~-----------~~~lrtf~gH~k~Vrd~~~s~~g~-~f 273 (503)
T KOG0282|consen 210 LSGHTKG---VSAIQWFPKKGHLLLSGGMD-GLVKLWNVYDD-----------RRCLRTFKGHRKPVRDASFNNCGT-SF 273 (503)
T ss_pred ccCCccc---cchhhhccceeeEEEecCCC-ceEEEEEEecC-----------cceehhhhcchhhhhhhhccccCC-ee
Confidence 4677777 99999999666799999999 99999999431 223445599999999999999999 99
Q ss_pred EEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecC-CEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCee
Q 037120 228 IASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAEN-QIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLT 306 (489)
Q Consensus 228 ~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 306 (489)
+|++.|+.|++||+++|+ ++..+. -...++|+.|+|++ +.+++|+.|+.|+.||+|+++.++.+..|-+. |.
T Consensus 274 LS~sfD~~lKlwDtETG~--~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~----i~ 346 (503)
T KOG0282|consen 274 LSASFDRFLKLWDTETGQ--VLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGA----IL 346 (503)
T ss_pred eeeecceeeeeeccccce--EEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhh----ee
Confidence 999999999999999998 665543 24567899999999 67778888999999999999999999888877 88
Q ss_pred EEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCC
Q 037120 307 SLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHL 386 (489)
Q Consensus 307 ~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (489)
.+.|-++|+.+.+.. +...+.++..+-. ..+. +........++ +
T Consensus 347 ~i~F~~~g~rFissS-----------------Ddks~riWe~~~~--v~ik-~i~~~~~hsmP--~-------------- 390 (503)
T KOG0282|consen 347 DITFVDEGRRFISSS-----------------DDKSVRIWENRIP--VPIK-NIADPEMHTMP--C-------------- 390 (503)
T ss_pred eeEEccCCceEeeec-----------------cCccEEEEEcCCC--ccch-hhcchhhccCc--c--------------
Confidence 888888887765421 1111111111100 0000 00000011111 1
Q ss_pred CcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCC--CceEEEEeeCCCCeEE
Q 037120 387 RKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLS--EGVTACVTHPLNNTIV 464 (489)
Q Consensus 387 ~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~va~~p~~~~i~ 464 (489)
+.-.|. +.++++-+.|+.|.++.+... .+.....+|.||. +.-..|.|+|+|.+|+
T Consensus 391 --~~~~P~-~~~~~aQs~dN~i~ifs~~~~-------------------~r~nkkK~feGh~vaGys~~v~fSpDG~~l~ 448 (503)
T KOG0282|consen 391 --LTLHPN-GKWFAAQSMDNYIAIFSTVPP-------------------FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLC 448 (503)
T ss_pred --eecCCC-CCeehhhccCceEEEEecccc-------------------cccCHhhhhcceeccCceeeEEEcCCCCeEE
Confidence 111122 677888899999999986544 0111122333774 5678899999999999
Q ss_pred eccCcceeEEEeccc
Q 037120 465 AGTKNSSLLVVSQKQ 479 (489)
Q Consensus 465 sgs~dg~i~v~~~~~ 479 (489)
+|+.||.+++|.-|.
T Consensus 449 SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 449 SGDSDGKVNFWDWKT 463 (503)
T ss_pred eecCCccEEEeechh
Confidence 999999999997654
No 68
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.6e-25 Score=214.93 Aligned_cols=260 Identities=11% Similarity=0.193 Sum_probs=188.2
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|..++|+|..+.+| ++-.. |.|++||.+- .+++..|.+|.++|..++|+|+.+ +|++|+.|-.|+
T Consensus 12 vKglsFHP~rPwIL-tslHs-G~IQlWDYRM------------~tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykIk 76 (1202)
T KOG0292|consen 12 VKGLSFHPKRPWIL-TSLHS-GVIQLWDYRM------------GTLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKIK 76 (1202)
T ss_pred ccceecCCCCCEEE-EeecC-ceeeeehhhh------------hhHHhhhhccCCccceeeecCCCC-eEEecCCccEEE
Confidence 77799999987444 45444 9999999932 223344589999999999999999 999999999999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
+|+..+.+ |+.++.+|-+.|..+.|++.-+.+++++.|.+|+||+..+++++..+.+|... |.|.+|+|....+
T Consensus 77 VWnYk~rr--clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHY----VMcAqFhptEDlI 150 (1202)
T KOG0292|consen 77 VWNYKTRR--CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHY----VMCAQFHPTEDLI 150 (1202)
T ss_pred EEecccce--ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceE----EEeeccCCccceE
Confidence 99999866 88888899999999999999999999999999999999999999999999988 9999999988777
Q ss_pred eeccccceeeccceeEEE---eCCCC--CeEEEEEecCC-c---e-EEEEeeccceeeecCCCCCCcCCCCccccccCCC
Q 037120 318 GTLKAQSKIVSQEIHSID---LDPSC--SYQLAFHLDDG-W---S-GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLR 387 (489)
Q Consensus 318 ~~~~~~~~~~~~~i~~~~---~~p~~--~~~~~~~~~~~-w---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (489)
++......+.-..|..+. ..|.+ ..+.....+.. . . .+-.+..||- +.+.
T Consensus 151 VSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD--------------------RGVN 210 (1202)
T KOG0292|consen 151 VSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD--------------------RGVN 210 (1202)
T ss_pred EEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc--------------------cccc
Confidence 653322222211111111 11110 00000000000 0 0 0111112221 2223
Q ss_pred cceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEecc
Q 037120 388 KPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGT 467 (489)
Q Consensus 388 ~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs 467 (489)
..+|.|+ -.++++|++|..|++|.++..+.. ++.... ||.+.|.++-|||..+.|+|.|
T Consensus 211 waAfhpT-lpliVSG~DDRqVKlWrmnetKaW--------EvDtcr------------gH~nnVssvlfhp~q~lIlSns 269 (1202)
T KOG0292|consen 211 WAAFHPT-LPLIVSGADDRQVKLWRMNETKAW--------EVDTCR------------GHYNNVSSVLFHPHQDLILSNS 269 (1202)
T ss_pred eEEecCC-cceEEecCCcceeeEEEeccccce--------eehhhh------------cccCCcceEEecCccceeEecC
Confidence 3334443 468899999999999999866211 222333 9999999999999999999999
Q ss_pred CcceeEEEeccc
Q 037120 468 KNSSLLVVSQKQ 479 (489)
Q Consensus 468 ~dg~i~v~~~~~ 479 (489)
+|++|+||.-.+
T Consensus 270 EDksirVwDm~k 281 (1202)
T KOG0292|consen 270 EDKSIRVWDMTK 281 (1202)
T ss_pred CCccEEEEeccc
Confidence 999999996544
No 69
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-23 Score=181.11 Aligned_cols=312 Identities=11% Similarity=0.127 Sum_probs=202.7
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.+..|...|++++|+.||++||+++.|++|+||++.......-. .+.. ....++ -+.++|.||...+
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr------~~R~----nve~dh---pT~V~FapDc~s~ 147 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHR------CIRQ----NVEYDH---PTRVVFAPDCKSV 147 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhh------Hhhc----cccCCC---ceEEEECCCcceE
Confidence 36678888999999999999999999999999999872211100 0000 001112 5669999999878
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeece-eeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRR-SVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
+++.-.. .++++|.+....... ..+.... .-.+--..|...|-++-.-..+. +|++++.|..|.+||++ ++ .+
T Consensus 148 vv~~~~g-~~l~vyk~~K~~dG~-~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk-Gq--~L 221 (420)
T KOG2096|consen 148 VVSVKRG-NKLCVYKLVKKTDGS-GSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK-GQ--LL 221 (420)
T ss_pred EEEEccC-CEEEEEEeeecccCC-CCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC-Cc--ee
Confidence 7777755 899999985332111 1111000 00000134667777777766666 99999999999999999 55 45
Q ss_pred eeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeecc
Q 037120 250 ELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQ 329 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~ 329 (489)
..+......-+..+.+|+|+++++++..-.|++|.+--++. -+++. |. -..+.+.++.
T Consensus 222 ~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kd-G~fqe--------v~-------------rvf~LkGH~s 279 (420)
T KOG2096|consen 222 QSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKD-GTFQE--------VK-------------RVFSLKGHQS 279 (420)
T ss_pred eeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccC-cchhh--------hh-------------hhheeccchh
Confidence 45544445566789999999999999988899998743221 00000 00 0122335556
Q ss_pred ceeEEEeCCCCCeEEEEEecCCceEEEEee----cc---ceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEee
Q 037120 330 EIHSIDLDPSCSYQLAFHLDDGWSGVLDVY----NS---RVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGS 402 (489)
Q Consensus 330 ~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 402 (489)
.|.+++|++++.+.++.+.|+.|. ++++. .+ ...+.... +..+.. .....+..+|.|..++++
T Consensus 280 aV~~~aFsn~S~r~vtvSkDG~wr-iwdtdVrY~~~qDpk~Lk~g~~---pl~aag-----~~p~RL~lsP~g~~lA~s- 349 (420)
T KOG2096|consen 280 AVLAAAFSNSSTRAVTVSKDGKWR-IWDTDVRYEAGQDPKILKEGSA---PLHAAG-----SEPVRLELSPSGDSLAVS- 349 (420)
T ss_pred heeeeeeCCCcceeEEEecCCcEE-EeeccceEecCCCchHhhcCCc---chhhcC-----CCceEEEeCCCCcEEEee-
Confidence 667777777777888888888764 33221 11 11111111 111100 112356778888888877
Q ss_pred cCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 403 SSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 403 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
....|+++...++ +....++. -|.+.|.+++|+|+|.++|++|+ ..+.|+-
T Consensus 350 -~gs~l~~~~se~g----------~~~~~~e~-----------~h~~~Is~is~~~~g~~~atcGd-r~vrv~~ 400 (420)
T KOG2096|consen 350 -FGSDLKVFASEDG----------KDYPELED-----------IHSTTISSISYSSDGKYIATCGD-RYVRVIR 400 (420)
T ss_pred -cCCceEEEEcccC----------ccchhHHH-----------hhcCceeeEEecCCCcEEeeecc-eeeeeec
Confidence 5557999999888 66766662 59999999999999999999987 5666653
No 70
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=2.1e-24 Score=227.69 Aligned_cols=280 Identities=15% Similarity=0.199 Sum_probs=182.5
Q ss_pred CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCcee
Q 037120 117 SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEV 196 (489)
Q Consensus 117 dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~ 196 (489)
+|.+++|+.......... .......|... |.+++|+|++. ++++|+.| ++|+|||+..........
T Consensus 457 ~gl~~~~~~~~~~~~~~~---------~~~~~~~~~~~---V~~i~fs~dg~-~latgg~D-~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL---------KQGDLLNSSNL---VCAIGFDRDGE-FFATAGVN-KKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee---------ccccccCCCCc---EEEEEECCCCC-EEEEEeCC-CEEEEEECCccccccccc
Confidence 677888888764432210 01112335555 99999999986 78888888 999999984321110000
Q ss_pred eeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEee-cCCEEEEEe
Q 037120 197 LKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHA-ENQIIFAAG 275 (489)
Q Consensus 197 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~~~~ 275 (489)
..+.. .+. +...|.+++|++....+|++++.||+|++||+.+++ .+..+.+|...|++++|+| ++.+|++|+
T Consensus 523 ~~~~~----~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~--~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs 595 (793)
T PLN00181 523 HYPVV----ELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ--LVTEMKEHEKRVWSIDYSSADPTLLASGS 595 (793)
T ss_pred ccceE----Eec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe--EEEEecCCCCCEEEEEEcCCCCCEEEEEc
Confidence 00011 112 345899999998755599999999999999999866 5667779999999999997 788999999
Q ss_pred CCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCC-CCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceE
Q 037120 276 KHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLAS-MLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSG 354 (489)
Q Consensus 276 ~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~ 354 (489)
.||+|++||++++..+..+..+ .. +.++.|++ ++..++ +++.++. ..
T Consensus 596 ~Dg~v~iWd~~~~~~~~~~~~~-~~----v~~v~~~~~~g~~la--------------------------tgs~dg~-I~ 643 (793)
T PLN00181 596 DDGSVKLWSINQGVSIGTIKTK-AN----ICCVQFPSESGRSLA--------------------------FGSADHK-VY 643 (793)
T ss_pred CCCEEEEEECCCCcEEEEEecC-CC----eEEEEEeCCCCCEEE--------------------------EEeCCCe-EE
Confidence 9999999999998877776643 33 67777643 344333 2222221 11
Q ss_pred EEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhH
Q 037120 355 VLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSE 434 (489)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 434 (489)
+++...+.... . .+... ...+..+.|. .+.++++++.|+.|+|||+....... ....+..+.
T Consensus 644 iwD~~~~~~~~-~----~~~~h------~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~----~~~~l~~~~- 705 (793)
T PLN00181 644 YYDLRNPKLPL-C----TMIGH------SKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGI----NETPLHSFM- 705 (793)
T ss_pred EEECCCCCccc-e----EecCC------CCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCcccc----CCcceEEEc-
Confidence 22222111000 0 00000 0011123333 25578899999999999997541000 002233444
Q ss_pred hhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecc
Q 037120 435 RTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 435 ~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~ 478 (489)
+|...+++++|+|++.+||+|+.||.|.||...
T Consensus 706 -----------gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 706 -----------GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred -----------CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 899999999999999999999999999999754
No 71
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.9e-25 Score=208.10 Aligned_cols=242 Identities=17% Similarity=0.249 Sum_probs=190.0
Q ss_pred EEEEC-CCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCC
Q 037120 101 ALDFD-CKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSN 179 (489)
Q Consensus 101 ~~~fs-~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g 179 (489)
++..+ |.++||.+|+.||.|++|+..........+ ....++.|..| |..+....++. .|++++.| -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~--~~asme~HsDW---------VNDiiL~~~~~-tlIS~SsD-t 95 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP--YIASMEHHSDW---------VNDIILCGNGK-TLISASSD-T 95 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccc--hhhhhhhhHhH---------HhhHHhhcCCC-ceEEecCC-c
Confidence 44444 457789999999999999998744432211 11256667777 88888877775 66677777 9
Q ss_pred EEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEE-ecCCCcEEEEEeCCCcEEEEECCCCCcC--------cee
Q 037120 180 VVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAF-SAVNTSRLIASDTHGVVNIWDRRVGVLP--------SLE 250 (489)
Q Consensus 180 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~l~s~s~dg~i~iwd~~~~~~~--------~~~ 250 (489)
+|++|+..... ..+..++..|.+-|.+++. -++.. ++++||-|+.|.+||++++... ...
T Consensus 96 TVK~W~~~~~~----------~~c~stir~H~DYVkcla~~ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~ 164 (735)
T KOG0308|consen 96 TVKVWNAHKDN----------TFCMSTIRTHKDYVKCLAYIAKNNE-LVASGGLDRKIFLWDINTGTATLVASFNNVTVN 164 (735)
T ss_pred eEEEeecccCc----------chhHhhhhcccchheeeeecccCce-eEEecCCCccEEEEEccCcchhhhhhccccccc
Confidence 99999994321 1122334679999999999 55555 9999999999999999976321 111
Q ss_pred ecc-CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeecc
Q 037120 251 LST-GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQ 329 (489)
Q Consensus 251 ~~~-~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~ 329 (489)
... ++..+|++++.+++|..+++||..+.|++||.++.+.+..+.+|... |..+..++|
T Consensus 165 sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdN----Vr~ll~~dD---------------- 224 (735)
T KOG0308|consen 165 SLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDN----VRVLLVNDD---------------- 224 (735)
T ss_pred cCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccc----eEEEEEcCC----------------
Confidence 222 78899999999999999999999999999999999998889999877 666543322
Q ss_pred ceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEE
Q 037120 330 EIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIH 409 (489)
Q Consensus 330 ~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~ 409 (489)
|..++++|.||+|+
T Consensus 225 ------------------------------------------------------------------Gt~~ls~sSDgtIr 238 (735)
T KOG0308|consen 225 ------------------------------------------------------------------GTRLLSASSDGTIR 238 (735)
T ss_pred ------------------------------------------------------------------CCeEeecCCCceEE
Confidence 55677899999999
Q ss_pred EEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEE
Q 037120 410 LLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLV 474 (489)
Q Consensus 410 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v 474 (489)
+||+... +++..+. -|.+.|.++..+|+-..+.+|+.||.|..
T Consensus 239 lWdLgqQ----------rCl~T~~------------vH~e~VWaL~~~~sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 239 LWDLGQQ----------RCLATYI------------VHKEGVWALQSSPSFTHVYSGGRDGNIYR 281 (735)
T ss_pred eeecccc----------ceeeeEE------------eccCceEEEeeCCCcceEEecCCCCcEEe
Confidence 9999988 8888777 89999999999999999999999999987
No 72
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=1.5e-24 Score=190.89 Aligned_cols=203 Identities=17% Similarity=0.234 Sum_probs=150.4
Q ss_pred cccCCCceeEEEECCCC--cEEEEEecCCeEEEEeCCCcccccCCCCC--CCCCcccccccccCCCCCCceeEEEeeCCC
Q 037120 92 RSFGKPGISALDFDCKG--IYLVSATRSGCLTVHDFESLYYQCNGTLP--GVGLKEDQSKHLLHIPLPQQLDAVRWNLAN 167 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g--~~la~g~~dg~i~vwd~~~~~~~~~~~~~--~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~ 167 (489)
..++..+|+.+.-++-| .+.|+=+..|.|+||++...-....++.. ......+...+.+|...+++ ++|+|-.
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~---LdWSp~~ 223 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYG---LDWSPIK 223 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcccee---eeccccc
Confidence 34455667777777665 45666677999999998763221111110 00134555566789999888 9999977
Q ss_pred CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc-
Q 037120 168 QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL- 246 (489)
Q Consensus 168 ~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~- 246 (489)
...|++|.-- +.|++|....+.-. +. . .++.+|+..|.+++|+|...++|++||.||+|+|||+|.+.+
T Consensus 224 ~g~LlsGDc~-~~I~lw~~~~g~W~----vd-~----~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~ 293 (440)
T KOG0302|consen 224 TGRLLSGDCV-KGIHLWEPSTGSWK----VD-Q----RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK 293 (440)
T ss_pred ccccccCccc-cceEeeeeccCcee----ec-C----ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc
Confidence 7778888766 89999999543211 11 1 124789999999999999999999999999999999999843
Q ss_pred CceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc---cceeecCCccCCCCeeEEEeCC
Q 037120 247 PSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT---SAPFHNHKEVCHLPLTSLKLAS 312 (489)
Q Consensus 247 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~---~~~~~~~~~~~~~~v~~l~~~~ 312 (489)
+++ ..++|.+.|+.|.|+..-.+|++|+.||+++|||+|+.+. +..|+-|..+ |+++.|+|
T Consensus 294 ~~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p----ItsieW~p 357 (440)
T KOG0302|consen 294 AAV-STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP----ITSIEWHP 357 (440)
T ss_pred cee-EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC----eeEEEecc
Confidence 466 3479999999999999999999999999999999998543 5566666644 66666655
No 73
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.7e-24 Score=179.96 Aligned_cols=257 Identities=11% Similarity=0.095 Sum_probs=194.3
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeC-CCCCEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNL-ANQDEVAC 173 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~-~~~~~l~s 173 (489)
|+.-|-.+..+-.|+.|||++.|++|+||....... .....++.||.++ |..++|.. .-..+|++
T Consensus 10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-----------s~ll~~L~Gh~GP---Vwqv~wahPk~G~iLAS 75 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-----------SKLLAELTGHSGP---VWKVAWAHPKFGTILAS 75 (299)
T ss_pred hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-----------ceeeeEecCCCCC---eeEEeecccccCcEeeE
Confidence 444567777788899999999999999999987322 1233456889888 66699964 43459999
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCc-EEEEEeCCCcEEEEECCCC-CcCceee
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTS-RLIASDTHGVVNIWDRRVG-VLPSLEL 251 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~-~~~~~~~ 251 (489)
++.| |.|.||.-..+ .......+ ..|...|++++|-|.+.. .|++++.||.|.|.+.+.. .....++
T Consensus 76 csYD-gkVIiWke~~g------~w~k~~e~----~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki 144 (299)
T KOG1332|consen 76 CSYD-GKVIIWKEENG------RWTKAYEH----AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKI 144 (299)
T ss_pred eecC-ceEEEEecCCC------chhhhhhh----hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhh
Confidence 9999 99999997433 12222222 779999999999997643 6788889999999998876 3334445
Q ss_pred ccCCCCceeEEEEeec---C-----------CEEEEEeCCCeEEEEEcCCCcc--cceeecCCccCCCCeeEEEeCCCCc
Q 037120 252 STGSHGTLNSIQLHAE---N-----------QIIFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~---~-----------~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
...|.-.|++++|.|- | +.|++||.|+.|+||+..+++- -..|.+|.+. |+.++|.|.-.
T Consensus 145 ~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw----VRDVAwaP~~g 220 (299)
T KOG1332|consen 145 VFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDW----VRDVAWAPSVG 220 (299)
T ss_pred hhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchh----hhhhhhccccC
Confidence 6699999999999986 4 4589999999999999988643 4458889888 88888887421
Q ss_pred ceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCC
Q 037120 316 KIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTN 395 (489)
Q Consensus 316 ~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (489)
. .
T Consensus 221 l-----------------------------------------------------------~------------------- 222 (299)
T KOG1332|consen 221 L-----------------------------------------------------------P------------------- 222 (299)
T ss_pred C-----------------------------------------------------------C-------------------
Confidence 1 0
Q ss_pred cEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEE
Q 037120 396 SIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 396 ~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~ 475 (489)
..+++++|+||++.||...... .+ -....++ .....+..++|++.|+.|+.++.|..+.+|
T Consensus 223 ~s~iAS~SqDg~viIwt~~~e~-e~------wk~tll~------------~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 223 KSTIASCSQDGTVIIWTKDEEY-EP------WKKTLLE------------EFPDVVWRVSWSLSGNILAVSGGDNKVTLW 283 (299)
T ss_pred ceeeEEecCCCcEEEEEecCcc-Cc------ccccccc------------cCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence 4578999999999999876320 00 0111122 466789999999999999999999999999
Q ss_pred ec
Q 037120 476 SQ 477 (489)
Q Consensus 476 ~~ 477 (489)
-.
T Consensus 284 ke 285 (299)
T KOG1332|consen 284 KE 285 (299)
T ss_pred Ee
Confidence 54
No 74
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.6e-24 Score=175.51 Aligned_cols=239 Identities=18% Similarity=0.256 Sum_probs=180.1
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|.++.|+-++.+.|.+|+ |.+|++|+.. ...++.++.+|...|.+++.+.|+. .|++|+.|..|.
T Consensus 20 V~avryN~dGnY~ltcGs--drtvrLWNp~------------rg~liktYsghG~EVlD~~~s~Dns-kf~s~GgDk~v~ 84 (307)
T KOG0316|consen 20 VRAVRYNVDGNYCLTCGS--DRTVRLWNPL------------RGALIKTYSGHGHEVLDAALSSDNS-KFASCGGDKAVQ 84 (307)
T ss_pred eEEEEEccCCCEEEEcCC--CceEEeeccc------------ccceeeeecCCCceeeecccccccc-ccccCCCCceEE
Confidence 999999999987777777 5999999982 2223444599999999999999988 999999999999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc--cceeecCCccCCCCeeEEEeCCCCc
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
+||+.+++ ..+.+.+|.+.|+.++|+.+...+++|+.|.++++||.|+... ++.+...... |.++.
T Consensus 85 vwDV~TGk--v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~----V~Si~------ 152 (307)
T KOG0316|consen 85 VWDVNTGK--VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG----VSSID------ 152 (307)
T ss_pred EEEcccCe--eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCc----eeEEE------
Confidence 99999998 8888999999999999999999999999999999999997432 4444443333 44443
Q ss_pred ceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCC
Q 037120 316 KIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTN 395 (489)
Q Consensus 316 ~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (489)
+ .+..+++.+.|++ .+..++..|....-+.- .++..++++++
T Consensus 153 --------------------v--~~heIvaGS~DGt-vRtydiR~G~l~sDy~g--------------~pit~vs~s~d- 194 (307)
T KOG0316|consen 153 --------------------V--AEHEIVAGSVDGT-VRTYDIRKGTLSSDYFG--------------HPITSVSFSKD- 194 (307)
T ss_pred --------------------e--cccEEEeeccCCc-EEEEEeecceeehhhcC--------------CcceeEEecCC-
Confidence 3 2233444444443 23455555554332221 11233445555
Q ss_pred cEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCc--eEEEEeeCCCCeEEeccCcceeE
Q 037120 396 SIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEG--VTACVTHPLNNTIVAGTKNSSLL 473 (489)
Q Consensus 396 ~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~va~~p~~~~i~sgs~dg~i~ 473 (489)
+...+.++.|++|++.|-.++ ++++..+ ||... =+.+++......+++|++||.+.
T Consensus 195 ~nc~La~~l~stlrLlDk~tG----------klL~sYk------------Ghkn~eykldc~l~qsdthV~sgSEDG~Vy 252 (307)
T KOG0316|consen 195 GNCSLASSLDSTLRLLDKETG----------KLLKSYK------------GHKNMEYKLDCCLNQSDTHVFSGSEDGKVY 252 (307)
T ss_pred CCEEEEeeccceeeecccchh----------HHHHHhc------------ccccceeeeeeeecccceeEEeccCCceEE
Confidence 455556689999999999999 8998888 88754 36677777888999999999999
Q ss_pred EEeccccccc
Q 037120 474 VVSQKQQCTS 483 (489)
Q Consensus 474 v~~~~~~~~~ 483 (489)
+|.-..+.+.
T Consensus 253 ~wdLvd~~~~ 262 (307)
T KOG0316|consen 253 FWDLVDETQI 262 (307)
T ss_pred EEEeccceee
Confidence 9987766543
No 75
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.3e-23 Score=198.89 Aligned_cols=329 Identities=17% Similarity=0.214 Sum_probs=230.9
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEee---CC----CCCEE
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWN---LA----NQDEV 171 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~---~~----~~~~l 171 (489)
..++.|++..+.|.+.-.|..++|||+.....+.+ ...+.-|....|+|..+-.+ |. -...+
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk-----------~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF 395 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGK-----------CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCF 395 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccc-----------eeeeeeccceeeeeccccccccCcccccCCccce
Confidence 56788999999999999999999999987332221 11123355553332222211 00 12368
Q ss_pred EEEecCCCEEEEEEeccCCCCCc--------------------eeeee-----ceeeeeecCCcccCeeEEEEecCCCcE
Q 037120 172 ACASTRSNVVSIYDIGYISDEPV--------------------EVLKT-----RRSVTVVGSDVQKGLSDLAFSAVNTSR 226 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~--------------------~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~~ 226 (489)
++++.| ++|++||+........ +.+.. .........+-...+.+++.+|+++ +
T Consensus 396 ~TCSsD-~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq-h 473 (1080)
T KOG1408|consen 396 TTCSSD-GTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ-H 473 (1080)
T ss_pred eEecCC-CcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc-e
Confidence 888888 9999999965211110 00000 0000111223456899999999999 9
Q ss_pred EEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEee---cCCEEEEEeCCCeEEEEEcCCC-cccceeecCCccCC
Q 037120 227 LIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHA---ENQIIFAAGKHGSIYLWDLRGG-RTSAPFHNHKEVCH 302 (489)
Q Consensus 227 l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p---~~~~l~~~~~dg~i~lwd~~~~-~~~~~~~~~~~~~~ 302 (489)
|++|..-|.++|||+..-+ ..-.+.+|+..|.|+.|+. ..++|++++.|.-|.+||+... ..+.++.+|...
T Consensus 474 LAsGDr~GnlrVy~Lq~l~--~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss-- 549 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELE--YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS-- 549 (1080)
T ss_pred ecccCccCceEEEEehhhh--hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc--
Confidence 9999999999999998765 3445679999999999985 4567888899999999999754 448899999988
Q ss_pred CCeeEEEeCCCCc---ceeecc---------------------ccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEe
Q 037120 303 LPLTSLKLASMLE---KIGTLK---------------------AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDV 358 (489)
Q Consensus 303 ~~v~~l~~~~~~~---~i~~~~---------------------~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~ 358 (489)
|+++.|.-.|. +| +.. .........++.|++.|..+++++.+.|.. .++.++
T Consensus 550 --ITsvKFa~~gln~~Mi-scGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrn-irif~i 625 (1080)
T KOG1408|consen 550 --ITSVKFACNGLNRKMI-SCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRN-IRIFDI 625 (1080)
T ss_pred --eeEEEEeecCCceEEE-eccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccc-eEEEec
Confidence 99999998872 22 100 001112456889999999999999988765 346666
Q ss_pred eccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhh
Q 037120 359 YNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKL 438 (489)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (489)
..|...+.+.-...-..+ .-++..-| .+.|+++...|.++.++|+.++ +.+..+.
T Consensus 626 ~sgKq~k~FKgs~~~eG~---------lIKv~lDP-SgiY~atScsdktl~~~Df~sg----------EcvA~m~----- 680 (1080)
T KOG1408|consen 626 ESGKQVKSFKGSRDHEGD---------LIKVILDP-SGIYLATSCSDKTLCFVDFVSG----------ECVAQMT----- 680 (1080)
T ss_pred cccceeeeecccccCCCc---------eEEEEECC-CccEEEEeecCCceEEEEeccc----------hhhhhhc-----
Confidence 666666644331111000 00011111 2889999999999999999999 9998888
Q ss_pred cccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 439 KKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 439 ~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
||.+.|+.+.|.++-+.|++.+.||+|+||---..
T Consensus 681 -------GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 681 -------GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred -------CcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 99999999999999999999999999999965443
No 76
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=1.3e-23 Score=188.09 Aligned_cols=249 Identities=14% Similarity=0.218 Sum_probs=196.7
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
....+|.++...|....+++|+.|..+.++|....+... . +.||... |+.+.|+|+.. .+++
T Consensus 217 t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~--------~------~~Gh~kk---i~~v~~~~~~~-~v~~ 278 (506)
T KOG0289|consen 217 TSTPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA--------T------LKGHTKK---ITSVKFHKDLD-TVIT 278 (506)
T ss_pred cCCCCeeEEeecCCCCcceecCCCCceEEEecchhhhhh--------h------ccCcceE---EEEEEeccchh-heee
Confidence 344679999999988899999999999999999866555 2 3566666 99999999975 7777
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST 253 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 253 (489)
++.| -.|+||.+...... .. ...|..+|+.+..+|.|. +|++++.|+++.+.|++++...+...-.
T Consensus 279 aSad-~~i~vws~~~~s~~------~~------~~~h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~ 344 (506)
T KOG0289|consen 279 ASAD-EIIRVWSVPLSSEP------TS------SRPHEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDE 344 (506)
T ss_pred cCCc-ceEEeeccccccCc------cc------cccccccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEEEEeec
Confidence 8877 99999999433211 11 156889999999999999 9999999999999999998733221111
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeE
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHS 333 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~ 333 (489)
...-.+++.+|+|||.++.+|..||.|+|||+..+..+..|.+|.+. |.+++|+.+
T Consensus 345 ~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~----vk~i~FsEN-------------------- 400 (506)
T KOG0289|consen 345 TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGP----VKAISFSEN-------------------- 400 (506)
T ss_pred cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCc----eeEEEeccC--------------------
Confidence 22345899999999999999999999999999999889999998866 777765532
Q ss_pred EEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEec
Q 037120 334 IDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDF 413 (489)
Q Consensus 334 ~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~ 413 (489)
|.|++++.+|++|++||+
T Consensus 401 --------------------------------------------------------------GY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 401 --------------------------------------------------------------GYWLATAADDGSVKLWDL 418 (506)
T ss_pred --------------------------------------------------------------ceEEEEEecCCeEEEEEe
Confidence 778888899999999999
Q ss_pred cCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccccc
Q 037120 414 FPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~ 481 (489)
+.. +..+.+.. .-..+|.++.|.+.|.+++.+|.|=.|.++..+.++
T Consensus 419 RKl----------~n~kt~~l-----------~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~ 465 (506)
T KOG0289|consen 419 RKL----------KNFKTIQL-----------DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS 465 (506)
T ss_pred hhh----------cccceeec-----------cccccceeEEEcCCCCeEEeecceeEEEEEeccccc
Confidence 987 55544431 223369999999999999999887777776655543
No 77
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.2e-23 Score=177.86 Aligned_cols=278 Identities=13% Similarity=0.138 Sum_probs=189.2
Q ss_pred EEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccC
Q 037120 110 YLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYI 189 (489)
Q Consensus 110 ~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~ 189 (489)
.|++|+....|.=+++......... ...-++.+...+..|... |++|+.+- ..+++|+.| -+|+|||++..
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~--s~~~~l~~lF~~~aH~~s---itavAVs~---~~~aSGssD-etI~IYDm~k~ 73 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTD--SVKPTLKPLFAFSAHAGS---ITALAVSG---PYVASGSSD-ETIHIYDMRKR 73 (362)
T ss_pred eEEEeeeeeEEEEEEeccCcccccc--ccceeeeccccccccccc---eeEEEecc---eeEeccCCC-CcEEEEeccch
Confidence 3677888888877777653311100 000023333444556666 99999864 378899888 89999999433
Q ss_pred CCCCceeeeeceeeeeecCCcccCeeEEEEecCCC-cEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecC
Q 037120 190 SDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT-SRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAEN 268 (489)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 268 (489)
.+ ...+..|.+.|+++.|.+.-. +.|++|+.||.|.+|+...-+ ++..+.+|.+.|+.++.+|.+
T Consensus 74 ~q------------lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~--~~~slK~H~~~Vt~lsiHPS~ 139 (362)
T KOG0294|consen 74 KQ------------LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE--LLKSLKAHKGQVTDLSIHPSG 139 (362)
T ss_pred hh------------hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE--EeeeecccccccceeEecCCC
Confidence 21 112356899999999987652 479999999999999988754 888999999999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEe
Q 037120 269 QIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHL 348 (489)
Q Consensus 269 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~ 348 (489)
++.++.|.|+.+++||+-.|+.-..++-... -+.+.|+|.|.++. +...
T Consensus 140 KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-----at~v~w~~~Gd~F~--------------------------v~~~ 188 (362)
T KOG0294|consen 140 KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-----ATLVSWSPQGDHFV--------------------------VSGR 188 (362)
T ss_pred ceEEEEcCCceeeeehhhcCccceeeccCCc-----ceeeEEcCCCCEEE--------------------------EEec
Confidence 9999999999999999999887544443221 23466666665443 2111
Q ss_pred cCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcc
Q 037120 349 DDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNED 428 (489)
Q Consensus 349 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~ 428 (489)
+ .+++|.-...+++. ... .+.+..+-.+..+.++++|.+|+.|.+||..+. ..
T Consensus 189 ~-----~i~i~q~d~A~v~~------~i~------~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~----------~~ 241 (362)
T KOG0294|consen 189 N-----KIDIYQLDNASVFR------EIE------NPKRILCATFLDGSELLVGGDNEWISLKDTDSD----------TP 241 (362)
T ss_pred c-----EEEEEecccHhHhh------hhh------ccccceeeeecCCceEEEecCCceEEEeccCCC----------cc
Confidence 1 11111111111000 000 001122222233667888889999999999877 56
Q ss_pred cchhhHhhhhcccCCcccCCCceEEEEe--eCCCCeEEeccCcceeEEEecccc
Q 037120 429 IESLSERTKLKKENRFVPLSEGVTACVT--HPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~h~~~V~~va~--~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
+..+. +|...|-++++ .|.+.+|+|+|.||.|+||...-+
T Consensus 242 ~~~~~------------AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 242 LTEFL------------AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ceeee------------cchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 66666 99999999985 567789999999999999976554
No 78
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=6.3e-23 Score=175.80 Aligned_cols=281 Identities=13% Similarity=0.160 Sum_probs=182.1
Q ss_pred cCCCceeEEEECC-CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 94 FGKPGISALDFDC-KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 94 ~~~~~V~~~~fs~-~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
+.+..|.+|+||| ...++++|+.||+||+|+++.. |...+ .....|.+. |.+++|+.++. .++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-----------g~~~~-ka~~~~~~P---vL~v~Wsddgs-kVf 88 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-----------GQLVP-KAQQSHDGP---VLDVCWSDDGS-KVF 88 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecC-----------Ccccc-hhhhccCCC---eEEEEEccCCc-eEE
Confidence 3445699999999 5667779999999999999872 11222 111234455 99999999996 666
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC-cEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT-SRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
+|+.| +.+++||+..+ ++ ... ..|..+|..+.|-+... ..|+|||-|.+|+.||.|... .+..
T Consensus 89 ~g~~D-k~~k~wDL~S~-----Q~----~~v----~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~--pv~t 152 (347)
T KOG0647|consen 89 SGGCD-KQAKLWDLASG-----QV----SQV----AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN--PVAT 152 (347)
T ss_pred eeccC-CceEEEEccCC-----Ce----eee----eecccceeEEEEecCCCcceeEecccccceeecccCCCC--eeee
Confidence 66666 99999999433 11 111 56999999999987543 278999999999999999754 2322
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCCcce--eeccccceeec
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASMLEKI--GTLKAQSKIVS 328 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~i--~~~~~~~~~~~ 328 (489)
+ .-.+.++++.. ....++++..+..|.+|+++++.. .+.++. ...-.+++++...+.... +++. ..
T Consensus 153 ~-~LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~S---pLk~Q~R~va~f~d~~~~alGsiE-----Gr 221 (347)
T KOG0647|consen 153 L-QLPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIES---PLKWQTRCVACFQDKDGFALGSIE-----GR 221 (347)
T ss_pred e-eccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcC---cccceeeEEEEEecCCceEeeeec-----ce
Confidence 2 22455665554 456778888899999999987643 222222 111227888777666433 2211 11
Q ss_pred cceeEEEe-CCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCc
Q 037120 329 QEIHSIDL-DPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHG 407 (489)
Q Consensus 329 ~~i~~~~~-~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~ 407 (489)
..|..|.- .|...+.+-|+....- +. -+...+..++|+|..+. +++.+.||+
T Consensus 222 v~iq~id~~~~~~nFtFkCHR~~~~----------~~----------------~~VYaVNsi~FhP~hgt-lvTaGsDGt 274 (347)
T KOG0647|consen 222 VAIQYIDDPNPKDNFTFKCHRSTNS----------VN----------------DDVYAVNSIAFHPVHGT-LVTAGSDGT 274 (347)
T ss_pred EEEEecCCCCccCceeEEEeccCCC----------CC----------------CceEEecceEeecccce-EEEecCCce
Confidence 12233322 2222222222221110 00 01233455677776665 455678999
Q ss_pred EEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEec
Q 037120 408 IHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAG 466 (489)
Q Consensus 408 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sg 466 (489)
+.+||-... ..+...+ .|..+|++++|+-+|.++|-+
T Consensus 275 f~FWDkdar----------~kLk~s~------------~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 275 FSFWDKDAR----------TKLKTSE------------THPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred EEEecchhh----------hhhhccC------------cCCCccceeEecCCCCEEEEE
Confidence 999998877 6666666 899999999999999977643
No 79
>PTZ00421 coronin; Provisional
Probab=99.92 E-value=7.9e-23 Score=200.11 Aligned_cols=173 Identities=16% Similarity=0.171 Sum_probs=135.3
Q ss_pred cccCCCceeEEEECC-CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDC-KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~-~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..|...|.+++|+| ++++||+|+.||+|+|||+........ ...+...+.+|... |.+++|+|++..+
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~-------~~~~l~~L~gH~~~---V~~l~f~P~~~~i 140 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN-------ISDPIVHLQGHTKK---VGIVSFHPSAMNV 140 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc-------cCcceEEecCCCCc---EEEEEeCcCCCCE
Confidence 455667799999999 889999999999999999976322110 01122334567766 9999999987778
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
|++++.| ++|+|||+... .. ...+.+|...|.+++|+|++. +|++++.|+.|++||+++++ .+.
T Consensus 141 LaSgs~D-gtVrIWDl~tg-----~~-------~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~--~v~ 204 (493)
T PTZ00421 141 LASAGAD-MVVNVWDVERG-----KA-------VEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGT--IVS 204 (493)
T ss_pred EEEEeCC-CEEEEEECCCC-----eE-------EEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCc--EEE
Confidence 9999988 99999999432 11 122377999999999999998 99999999999999999876 555
Q ss_pred eccCCCCc-eeEEEEeecCCEEEEEe----CCCeEEEEEcCCCcc
Q 037120 251 LSTGSHGT-LNSIQLHAENQIIFAAG----KHGSIYLWDLRGGRT 290 (489)
Q Consensus 251 ~~~~h~~~-v~~~~~~p~~~~l~~~~----~dg~i~lwd~~~~~~ 290 (489)
.+.+|.+. +..+.|.+++..+++++ .|+.|++||+++...
T Consensus 205 tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 205 SVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 66678765 45678999988888765 379999999997653
No 80
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=1.1e-23 Score=197.20 Aligned_cols=294 Identities=17% Similarity=0.201 Sum_probs=202.6
Q ss_pred EEECCC---CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 102 LDFDCK---GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 102 ~~fs~~---g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
..|++. ...||.+..||.|.++|......... ......+..|... |..+.|.| ++.+|++++.|
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~e--------e~~lk~~~aH~nA---ifDl~wap-ge~~lVsasGD- 121 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLE--------ERQLKKPLAHKNA---IFDLKWAP-GESLLVSASGD- 121 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchh--------hhhhcccccccce---eEeeccCC-CceeEEEccCC-
Confidence 445543 56899999999999999887433311 1112345668777 88899999 67789998888
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-----ce----
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-----SL---- 249 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-----~~---- 249 (489)
.++++||+... ... -...+ .||...|.+++|.|+++..|++|+.||.|.|||++..... +.
T Consensus 122 sT~r~Wdvk~s-----~l~-G~~~~----~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~ 191 (720)
T KOG0321|consen 122 STIRPWDVKTS-----RLV-GGRLN----LGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYG 191 (720)
T ss_pred ceeeeeeeccc-----eee-cceee----cccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhc
Confidence 99999999432 111 12223 8999999999999999999999999999999998754310 11
Q ss_pred ----------------eeccCCCCceeE---EEEeecCCEEEEEeC-CCeEEEEEcCCCcccceeecCCccCCCCeeEEE
Q 037120 250 ----------------ELSTGSHGTLNS---IQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLK 309 (489)
Q Consensus 250 ----------------~~~~~h~~~v~~---~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~ 309 (489)
....++...|.+ +.+..|...|+++|. |+.|++||+|+......... .....
T Consensus 192 ~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep--------~~~~~ 263 (720)
T KOG0321|consen 192 RHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEP--------RGSDK 263 (720)
T ss_pred cccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCC--------CcccC
Confidence 111244455665 667789999999998 99999999998765333221 11111
Q ss_pred eCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCc---e------EEEEeeccceeeecCCCCCCcCCCCcc
Q 037120 310 LASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGW---S------GVLDVYNSRVSHVHCPPPAWLSDSNNS 380 (489)
Q Consensus 310 ~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w---~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (489)
+... ......+.++..+..|.++++.+.|+.. . .....+.|+....+.+....+.+
T Consensus 264 ~~t~-----------skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd---- 328 (720)
T KOG0321|consen 264 YPTH-----------SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD---- 328 (720)
T ss_pred ccCc-----------ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCC----
Confidence 1000 1122345777888889999999888762 1 12222333333322222222333
Q ss_pred ccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCC
Q 037120 381 ADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLN 460 (489)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~ 460 (489)
+.++++|+.|...++|.+... +....+. .||.-.|++|+|.|..
T Consensus 329 ---------------~~~l~SgSsd~~ayiw~vs~~----------e~~~~~l-----------~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 329 ---------------DCSLLSGSSDEQAYIWVVSSP----------EAPPALL-----------LGHTREVTTVRWLPSA 372 (720)
T ss_pred ---------------CceEeccCCCcceeeeeecCc----------cCChhhh-----------hCcceEEEEEeecccc
Confidence 889999999999999999877 3333222 2999999999999976
Q ss_pred -CeEEeccCcceeEEEec
Q 037120 461 -NTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 461 -~~i~sgs~dg~i~v~~~ 477 (489)
.-+|++++|..+.+|.-
T Consensus 373 ~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 373 TTPVATCSDDFRVKIWRL 390 (720)
T ss_pred CCCceeeccCcceEEEec
Confidence 36888899999999965
No 81
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.8e-23 Score=188.76 Aligned_cols=271 Identities=13% Similarity=0.132 Sum_probs=194.5
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccC-CCCCCC-C-Cccccccc-ccCCCCCCceeEEEeeCCC
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCN-GTLPGV-G-LKEDQSKH-LLHIPLPQQLDAVRWNLAN 167 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~-~~~~~~-g-~~~~~~~~-~~h~~~~~~V~~v~~~~~~ 167 (489)
...|+..|.|++++|++.+..+++.||+|.=|++.++..... .+.+.+ + ...+.... .+|..+ |.+++.++++
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~ke---il~~avS~Dg 214 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKE---ILTLAVSSDG 214 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccce---eEEEEEcCCC
Confidence 455777899999999999999999999999999988664421 111000 0 00111111 367777 9999999999
Q ss_pred CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC
Q 037120 168 QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP 247 (489)
Q Consensus 168 ~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 247 (489)
. .|++|+.| ..|.|||.. .+...+.+ .+|.+.|.+++|-.... .+++++.|..|++|++....
T Consensus 215 k-ylatgg~d-~~v~Iw~~~--------t~ehv~~~----~ghr~~V~~L~fr~gt~-~lys~s~Drsvkvw~~~~~s-- 277 (479)
T KOG0299|consen 215 K-YLATGGRD-RHVQIWDCD--------TLEHVKVF----KGHRGAVSSLAFRKGTS-ELYSASADRSVKVWSIDQLS-- 277 (479)
T ss_pred c-EEEecCCC-ceEEEecCc--------ccchhhcc----cccccceeeeeeecCcc-ceeeeecCCceEEEehhHhH--
Confidence 7 77788877 999999993 33334444 89999999999986554 99999999999999998765
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceee
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIV 327 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~ 327 (489)
.+..+.+|.+.|..+....-++.+-+|+.|.++++|++.. .....+.++.+. +.+++|-
T Consensus 278 ~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~s----idcv~~I---------------- 336 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGS----IDCVAFI---------------- 336 (479)
T ss_pred HHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCC----eeeEEEe----------------
Confidence 7778889999999999888888777777899999999943 212233333333 2222211
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCc
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHG 407 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~ 407 (489)
. ...+++||+||.
T Consensus 337 -----------------------------------------------n--------------------~~HfvsGSdnG~ 349 (479)
T KOG0299|consen 337 -----------------------------------------------N--------------------DEHFVSGSDNGS 349 (479)
T ss_pred -----------------------------------------------c--------------------ccceeeccCCce
Confidence 1 345788999999
Q ss_pred EEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 408 IHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 408 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
|.+|++... +.+.....+-........+.+...|++++..|..+++|+|+.+|.|+||-.+..
T Consensus 350 IaLWs~~KK----------kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 350 IALWSLLKK----------KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred EEEeeeccc----------CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 999999877 333222100000001122345569999999999999999999999999987665
No 82
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2.8e-24 Score=188.24 Aligned_cols=281 Identities=12% Similarity=0.115 Sum_probs=193.8
Q ss_pred cccCCCceeEEEECCCC-cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCKG-IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g-~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..|..||.|++=+|.. ..+|+|+.||.|+|||+....+.. .+..|..+ |..+++... .
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~--------~f~AH~G~---------V~Gi~v~~~---~ 121 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR--------TFKAHEGL---------VRGICVTQT---S 121 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh--------eeecccCc---------eeeEEeccc---c
Confidence 46688999999999987 789999999999999999866665 34444444 888999872 4
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
+++++.| .+|+.|-+... +..++ .+ ...+..|.-+..+. .++|||. .|.|||.+... +++
T Consensus 122 ~~tvgdD-KtvK~wk~~~~---------p~~ti----lg-~s~~~gIdh~~~~~-~FaTcGe--~i~IWD~~R~~--Pv~ 181 (433)
T KOG0268|consen 122 FFTVGDD-KTVKQWKIDGP---------PLHTI----LG-KSVYLGIDHHRKNS-VFATCGE--QIDIWDEQRDN--PVS 181 (433)
T ss_pred eEEecCC-cceeeeeccCC---------cceee----ec-cccccccccccccc-cccccCc--eeeecccccCC--ccc
Confidence 5566656 99999998431 12222 11 23566677666666 8999986 68999998654 455
Q ss_pred eccCCCCceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeecc
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAG-KHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQ 329 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~ 329 (489)
.+.-....|.++.|+|....+++++ .|+.|.|||+|++..++.+... -. .+.++|+|.+-.+......
T Consensus 182 smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~-mR----TN~IswnPeafnF~~a~ED------ 250 (433)
T KOG0268|consen 182 SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT-MR----TNTICWNPEAFNFVAANED------ 250 (433)
T ss_pred eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee-cc----ccceecCccccceeecccc------
Confidence 5555568899999999887766665 6999999999998876554421 11 5677888844333211100
Q ss_pred ceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEE
Q 037120 330 EIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIH 409 (489)
Q Consensus 330 ~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~ 409 (489)
..+.++...+ ....+.++.+|+..+..+ .|++. |.-+++||.|.+|+
T Consensus 251 -----------~nlY~~DmR~-l~~p~~v~~dhvsAV~dV--dfspt-------------------G~EfvsgsyDksIR 297 (433)
T KOG0268|consen 251 -----------HNLYTYDMRN-LSRPLNVHKDHVSAVMDV--DFSPT-------------------GQEFVSGSYDKSIR 297 (433)
T ss_pred -----------ccceehhhhh-hcccchhhcccceeEEEe--ccCCC-------------------cchhccccccceEE
Confidence 1111111100 124566777777776655 55555 66788999999999
Q ss_pred EEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 410 LLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 410 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
||.+..+ ..-...- . ---..|.+|.|+-+..+|+|||.||.|++|-.
T Consensus 298 If~~~~~----------~SRdiYh--t---------kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 298 IFPVNHG----------HSRDIYH--T---------KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred EeecCCC----------cchhhhh--H---------hhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 9999877 2111110 0 01135999999999999999999999999943
No 83
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.2e-23 Score=203.73 Aligned_cols=251 Identities=14% Similarity=0.203 Sum_probs=170.5
Q ss_pred cCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccC---------------------------CCC----------
Q 037120 150 LHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYI---------------------------SDE---------- 192 (489)
Q Consensus 150 ~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~---------------------------~~~---------- 192 (489)
.|.+. |.++.|+++|. +||+|+.| |.|+||.+... ...
T Consensus 265 ah~ga---Iw~mKFS~DGK-yLAsaGeD-~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 265 AHKGA---IWAMKFSHDGK-YLASAGED-GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred ccCCc---EEEEEeCCCCc-eeeecCCC-ceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 56666 99999999996 88999998 99999998650 000
Q ss_pred ------Cceee-----eeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeE
Q 037120 193 ------PVEVL-----KTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNS 261 (489)
Q Consensus 193 ------~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~ 261 (489)
+...+ .........+.||.+.|.+|.|+.++ +|++++.|.+|++|++...+ |+..+ .|.+.|+|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~--CL~~F-~HndfVTc 414 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKE--CLKVF-SHNDFVTC 414 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcc--eeeEE-ecCCeeEE
Confidence 00000 00112234468999999999999654 79999999999999999766 88776 79999999
Q ss_pred EEEee-cCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce--eeccccceeeccceeEEEeCC
Q 037120 262 IQLHA-ENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI--GTLKAQSKIVSQEIHSIDLDP 338 (489)
Q Consensus 262 ~~~~p-~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i--~~~~~~~~~~~~~i~~~~~~p 338 (489)
++|+| |.+|+++|+-||.||||++..-+.+ .+....+. |++++|.|||+.. +++.
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv-~W~Dl~~l----ITAvcy~PdGk~avIGt~~----------------- 472 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVV-DWNDLRDL----ITAVCYSPDGKGAVIGTFN----------------- 472 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeE-eehhhhhh----heeEEeccCCceEEEEEec-----------------
Confidence 99999 6788999999999999999875543 33333355 8889888888654 3221
Q ss_pred CCCeEEEEEecCCce--EEEEeec------cceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 339 SCSYQLAFHLDDGWS--GVLDVYN------SRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 339 ~~~~~~~~~~~~~w~--~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
|...+.-+.+.... .-+.... ..++.+. +.+.. -..+||| +.|..|||
T Consensus 473 -G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q-----~~p~~-----------------~~~vLVT-SnDSrIRI 528 (712)
T KOG0283|consen 473 -GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQ-----FFPGD-----------------PDEVLVT-SNDSRIRI 528 (712)
T ss_pred -cEEEEEEccCCeEEEeeeEeeccCccccCceeeeeE-----ecCCC-----------------CCeEEEe-cCCCceEE
Confidence 11111111111100 0111110 1111111 11111 0345555 79999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCC--CceEEEEeeCCCCeEEeccCcceeEEEecc
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLS--EGVTACVTHPLNNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~va~~p~~~~i~sgs~dg~i~v~~~~ 478 (489)
+|.... ..+..++ |+. ..=....|..+|++|+++++|.-|.||.-+
T Consensus 529 ~d~~~~----------~lv~KfK------------G~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 529 YDGRDK----------DLVHKFK------------GFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred Eeccch----------hhhhhhc------------ccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 999888 7777777 543 234567889999999999999999999853
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.4e-23 Score=189.36 Aligned_cols=242 Identities=16% Similarity=0.189 Sum_probs=175.0
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
....+.|.+++|+|...+=.+.+..-.+.||+..+...... +.. -... |.+++|-.||. +++
T Consensus 23 ~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~--------~sr------Fk~~---v~s~~fR~DG~-Lla 84 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKT--------FSR------FKDV---VYSVDFRSDGR-LLA 84 (487)
T ss_pred ccccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhh--------HHh------hccc---eeEEEeecCCe-EEE
Confidence 33456799999999765544444455799999887444331 111 1112 88999999986 777
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeec
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELS 252 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 252 (489)
+|... |.|+|||+ ++... ...+.+|+.+|..+.|+|+++.+|++|+.|+.+++||+.+.. ....+
T Consensus 85 aGD~s-G~V~vfD~-----k~r~i-------LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--v~~~l 149 (487)
T KOG0310|consen 85 AGDES-GHVKVFDM-----KSRVI-------LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--VQAEL 149 (487)
T ss_pred ccCCc-CcEEEecc-----ccHHH-------HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--EEEEe
Confidence 77766 99999997 21112 222378999999999999998889999999999999999876 33356
Q ss_pred cCCCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCc-ccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 253 TGSHGTLNSIQLHAENQ-IIFAAGKHGSIYLWDLRGGR-TSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 253 ~~h~~~v~~~~~~p~~~-~l~~~~~dg~i~lwd~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
.+|++.|.|.+|+|-.. .+++||.||+|++||+|... .+.++. |..+ |.++
T Consensus 150 ~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~p----Ve~v---------------------- 202 (487)
T KOG0310|consen 150 SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCP----VESV---------------------- 202 (487)
T ss_pred cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCc----eeeE----------------------
Confidence 79999999999999766 67777889999999999752 233332 2211 3333
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
.+-|. +..++++ ..+.|+|
T Consensus 203 ----l~lps--------------------------------------------------------gs~iasA-gGn~vkV 221 (487)
T KOG0310|consen 203 ----LALPS--------------------------------------------------------GSLIASA-GGNSVKV 221 (487)
T ss_pred ----EEcCC--------------------------------------------------------CCEEEEc-CCCeEEE
Confidence 22222 2233332 2358999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
||+.++ .+.+.... .|...|+|+.+..++..++|||.||.++||.
T Consensus 222 WDl~~G---------~qll~~~~------------~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 222 WDLTTG---------GQLLTSMF------------NHNKTVTCLRLASDSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred EEecCC---------ceehhhhh------------cccceEEEEEeecCCceEeecccccceEEEE
Confidence 999966 14444444 6999999999999999999999999999987
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=2.2e-23 Score=204.20 Aligned_cols=237 Identities=18% Similarity=0.272 Sum_probs=194.4
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
+...+.|..|. +.++++|+.|.+|++||......... .+.+|.+. |.++++.. +..++++|
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~-------------~l~GH~g~---V~~l~~~~-~~~~lvsg 267 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT-------------RLVGHFGG---VWGLAFPS-GGDKLVSG 267 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe-------------eccCCCCC---ceeEEEec-CCCEEEEE
Confidence 34458888887 56899999999999999998555442 24678777 88899987 55699999
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
+.| .++++||+..+ .+.+.+.+|...|.++...+ . .+++|+.|.+|++||+.++. ++..+.+
T Consensus 268 S~D-~t~rvWd~~sg------------~C~~~l~gh~stv~~~~~~~--~-~~~sgs~D~tVkVW~v~n~~--~l~l~~~ 329 (537)
T KOG0274|consen 268 STD-KTERVWDCSTG------------ECTHSLQGHTSSVRCLTIDP--F-LLVSGSRDNTVKVWDVTNGA--CLNLLRG 329 (537)
T ss_pred ecC-CcEEeEecCCC------------cEEEEecCCCceEEEEEccC--c-eEeeccCCceEEEEeccCcc--eEEEecc
Confidence 999 99999998433 24455689999999997643 3 78889999999999999887 8888888
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEE
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSI 334 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~ 334 (489)
|.++|+++..+ +.++++|+.||+|++||+.++++++.+.+|... |.++.+.
T Consensus 330 h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~----V~sl~~~----------------------- 380 (537)
T KOG0274|consen 330 HTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR----VYSLIVD----------------------- 380 (537)
T ss_pred ccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcce----EEEEEec-----------------------
Confidence 99999999997 889999999999999999999999999999877 6665322
Q ss_pred EeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCc-EEEEeecCCCcEEEEec
Q 037120 335 DLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNS-IYAVGSSSDHGIHLLDF 413 (489)
Q Consensus 335 ~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sgs~d~~i~vwd~ 413 (489)
+ .++++|+.|++|++||+
T Consensus 381 -------------------------------------------------------------~~~~~~Sgs~D~~IkvWdl 399 (537)
T KOG0274|consen 381 -------------------------------------------------------------SENRLLSGSLDTTIKVWDL 399 (537)
T ss_pred -------------------------------------------------------------CcceEEeeeeccceEeecC
Confidence 2 46888999999999999
Q ss_pred cCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccccc
Q 037120 414 FPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~ 481 (489)
.+.. +.+..+. +|.+.|..+.+ .++.|++++.||.|++|..+...
T Consensus 400 ~~~~---------~c~~tl~------------~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 400 RTKR---------KCIHTLQ------------GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGE 444 (537)
T ss_pred Cchh---------hhhhhhc------------CCccccccccc--ccceeEeccccccEEEeecccCc
Confidence 8771 4555666 89888876666 67899999999999999766544
No 86
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.5e-22 Score=164.31 Aligned_cols=262 Identities=15% Similarity=0.185 Sum_probs=188.3
Q ss_pred CCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccC-CCCCCCCCccccccc---ccCCCCCCceeEEEeeCCCCCEE
Q 037120 96 KPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCN-GTLPGVGLKEDQSKH---LLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~-~~~~~~g~~~~~~~~---~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
.+.|++++|.|.|.+.|+|+...+++|........... +.. -...+...+ .-|.+. |.|++|+|.++ ++
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea---~~~pp~v~~kr~khhkgs---iyc~~ws~~ge-li 104 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEA---AKQPPSVLCKRNKHHKGS---IYCTAWSPCGE-LI 104 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCccccccc---ccCCCeEEeeeccccCcc---EEEEEecCccC-eE
Confidence 45799999999999999999999999986654221111 000 011111112 225556 99999999996 99
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCC---CcEEEEEe-CCCcEEEEECCCCCcC
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVN---TSRLIASD-THGVVNIWDRRVGVLP 247 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~l~s~s-~dg~i~iwd~~~~~~~ 247 (489)
++|+.| .+|++.-.+..... .....-.+ .-|.+.|.+++|..+. ..+|++++ .|..|++-|...++
T Consensus 105 atgsnd-k~ik~l~fn~dt~~---~~g~dle~----nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-- 174 (350)
T KOG0641|consen 105 ATGSND-KTIKVLPFNADTCN---ATGHDLEF----NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-- 174 (350)
T ss_pred EecCCC-ceEEEEeccccccc---ccCcceee----eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC--
Confidence 999988 99999877533221 11112222 6689999999997542 23677666 67778888888776
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceee
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIV 327 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~ 327 (489)
.++.+.+|.+-|.++ ++-+|-.+++|+.|.+|++||+|-..++.++...... . -..
T Consensus 175 ~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~------------~-----------gle 230 (350)
T KOG0641|consen 175 GFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD------------G-----------GLE 230 (350)
T ss_pred cceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccC------------C-----------Ccc
Confidence 677788999999876 3446788888888999999999987666555421100 0 011
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCc
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHG 407 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~ 407 (489)
.+.|.+++++|. ++++++|-.|..
T Consensus 231 ssavaav~vdps--------------------------------------------------------grll~sg~~dss 254 (350)
T KOG0641|consen 231 SSAVAAVAVDPS--------------------------------------------------------GRLLASGHADSS 254 (350)
T ss_pred cceeEEEEECCC--------------------------------------------------------cceeeeccCCCc
Confidence 223344444443 667888889999
Q ss_pred EEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 408 IHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 408 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
..+||+..+ +.++.+. +|+..|.+|-|+|...++.+|+.|..|++-.
T Consensus 255 c~lydirg~----------r~iq~f~------------phsadir~vrfsp~a~yllt~syd~~ikltd 301 (350)
T KOG0641|consen 255 CMLYDIRGG----------RMIQRFH------------PHSADIRCVRFSPGAHYLLTCSYDMKIKLTD 301 (350)
T ss_pred eEEEEeeCC----------ceeeeeC------------CCccceeEEEeCCCceEEEEecccceEEEee
Confidence 999999999 8898888 9999999999999999999999999999843
No 87
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=5.6e-23 Score=194.23 Aligned_cols=285 Identities=13% Similarity=0.173 Sum_probs=210.9
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeE-EEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDA-VRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~-v~~~~~~~~~ 170 (489)
+..|...|..+++.+.. .+++++.||+++||+-...+....+ .++.+..+ |.+ +++.+.....
T Consensus 10 l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~------~~~~~~g~---------i~~~i~y~e~~~~~ 73 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETH------AFEGPKGF---------IANSICYAESDKGR 73 (745)
T ss_pred eccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccce------ecccCcce---------eeccceeccccCcc
Confidence 55677778888876554 8999999999999998663333321 12222223 444 7777654557
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
++.|+.| .+|.+|.+... . ...++.+|...|++++...++. +++||.|.++++|-... +..
T Consensus 74 l~~g~~D-~~i~v~~~~~~--~----------P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~----l~~ 134 (745)
T KOG0301|consen 74 LVVGGMD-TTIIVFKLSQA--E----------PLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGE----LVY 134 (745)
T ss_pred eEeeccc-ceEEEEecCCC--C----------chhhhhccccceeeeecCCcCc--eEecccccceEEecchh----hhc
Confidence 8999999 99999998322 1 2334589999999998766654 89999999999996543 555
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
...+|+..|.+++.-|.+ .+++|+.|.+|++|.- ++.+++|.+|.+. |+.+++-+++.++.
T Consensus 135 ~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~----VRgL~vl~~~~flS------------ 195 (745)
T KOG0301|consen 135 SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDC----VRGLAVLDDSHFLS------------ 195 (745)
T ss_pred ccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccchhh----eeeeEEecCCCeEe------------
Confidence 677999999999999998 6799999999999975 6789999999988 99999888765542
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
.+.||... ....++ .++..+.||...+|++. .... +..++++++|++++|
T Consensus 196 -----csNDg~Ir-~w~~~g---e~l~~~~ghtn~vYsis--~~~~-------------------~~~Ivs~gEDrtlri 245 (745)
T KOG0301|consen 196 -----CSNDGSIR-LWDLDG---EVLLEMHGHTNFVYSIS--MALS-------------------DGLIVSTGEDRTLRI 245 (745)
T ss_pred -----ecCCceEE-EEeccC---ceeeeeeccceEEEEEE--ecCC-------------------CCeEEEecCCceEEE
Confidence 12222211 122222 36667778888888773 2222 668889999999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCC-ceEEEEeeCCCCeEEeccCcceeEEEecccccccccc
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSE-GVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCTSDSM 486 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~~~~~ 486 (489)
|+.. ++.+.+. |.. .|.++.+-++|. |++|+.||.|+||+..+....+.|
T Consensus 246 W~~~------------e~~q~I~-------------lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~As~e 296 (745)
T KOG0301|consen 246 WKKD------------ECVQVIT-------------LPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRKASDE 296 (745)
T ss_pred eecC------------ceEEEEe-------------cCccceEEEEEeeCCC-EEEeccCceEEEEEecccccCCHH
Confidence 9876 3455554 433 799999998888 788889999999999887766654
No 88
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.91 E-value=4.4e-22 Score=184.73 Aligned_cols=245 Identities=16% Similarity=0.253 Sum_probs=177.5
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEE
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLI 228 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 228 (489)
.+|... |.+++|+|++. .+++++.| |.|++||+.... . .. .+..|...+..+.|+|+++ .++
T Consensus 6 ~~h~~~---i~~~~~~~~~~-~l~~~~~~-g~i~i~~~~~~~-----~---~~----~~~~~~~~i~~~~~~~~~~-~l~ 67 (289)
T cd00200 6 KGHTGG---VTCVAFSPDGK-LLATGSGD-GTIKVWDLETGE-----L---LR----TLKGHTGPVRDVAASADGT-YLA 67 (289)
T ss_pred cccCCC---EEEEEEcCCCC-EEEEeecC-cEEEEEEeeCCC-----c---EE----EEecCCcceeEEEECCCCC-EEE
Confidence 455555 99999999975 77777777 999999994321 1 11 1266888999999999997 899
Q ss_pred EEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEE
Q 037120 229 ASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSL 308 (489)
Q Consensus 229 s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l 308 (489)
+++.||.|++||+..++ ....+..|...+.++.|+|++.++++++.||.|++||+++++....+..|... +.++
T Consensus 68 ~~~~~~~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----i~~~ 141 (289)
T cd00200 68 SGSSDKTIRLWDLETGE--CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW----VNSV 141 (289)
T ss_pred EEcCCCeEEEEEcCccc--ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCc----EEEE
Confidence 99999999999999765 44456688889999999999888888777999999999988887777777766 8888
Q ss_pred EeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCc
Q 037120 309 KLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRK 388 (489)
Q Consensus 309 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (489)
.|+|++..+..... ++ .+. +++...+....... .. ...+..
T Consensus 142 ~~~~~~~~l~~~~~----------------~~-~i~----------i~d~~~~~~~~~~~------~~------~~~i~~ 182 (289)
T cd00200 142 AFSPDGTFVASSSQ----------------DG-TIK----------LWDLRTGKCVATLT------GH------TGEVNS 182 (289)
T ss_pred EEcCcCCEEEEEcC----------------CC-cEE----------EEEccccccceeEe------cC------ccccce
Confidence 88887665543110 01 111 11111111111000 00 012234
Q ss_pred ceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccC
Q 037120 389 PSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTK 468 (489)
Q Consensus 389 ~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~ 468 (489)
+.|.+++..++ +++.|+.|++||+... +.+..+. .|...|.+++|+|++..+++++.
T Consensus 183 ~~~~~~~~~l~-~~~~~~~i~i~d~~~~----------~~~~~~~------------~~~~~i~~~~~~~~~~~~~~~~~ 239 (289)
T cd00200 183 VAFSPDGEKLL-SSSSDGTIKLWDLSTG----------KCLGTLR------------GHENGVNSVAFSPDGYLLASGSE 239 (289)
T ss_pred EEECCCcCEEE-EecCCCcEEEEECCCC----------ceecchh------------hcCCceEEEEEcCCCcEEEEEcC
Confidence 56666654444 4556999999999887 6666665 78889999999999889999999
Q ss_pred cceeEEEeccc
Q 037120 469 NSSLLVVSQKQ 479 (489)
Q Consensus 469 dg~i~v~~~~~ 479 (489)
||.|.+|..+.
T Consensus 240 ~~~i~i~~~~~ 250 (289)
T cd00200 240 DGTIRVWDLRT 250 (289)
T ss_pred CCcEEEEEcCC
Confidence 99999998763
No 89
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=7.9e-24 Score=202.26 Aligned_cols=183 Identities=13% Similarity=0.236 Sum_probs=140.5
Q ss_pred eeEEEECC-CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 99 ISALDFDC-KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 99 V~~~~fs~-~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
+..+.|.. +.++||+++..|.|-+||+...... .....+..|... |.+++|++...++|++|+.|
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn-----------k~l~~f~EH~Rs---~~~ldfh~tep~iliSGSQD 155 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRN-----------KLLTVFNEHERS---ANKLDFHSTEPNILISGSQD 155 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccc-----------hhhhHhhhhccc---eeeeeeccCCccEEEecCCC
Confidence 44556653 3689999999999999999872110 111123446656 89999999999999999999
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCC
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHG 257 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~ 257 (489)
|+|++||++...+. .. +.+....|.+++|+|...+.|+++.+.|.+++||+|...+. ...+.+|.+
T Consensus 156 -g~vK~~DlR~~~S~--------~t----~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~-~~k~~AH~G 221 (839)
T KOG0269|consen 156 -GTVKCWDLRSKKSK--------ST----FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC-EKKLTAHNG 221 (839)
T ss_pred -ceEEEEeeeccccc--------cc----ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH-HHHhhcccC
Confidence 99999999654332 11 25567799999999998889999999999999999987654 446679999
Q ss_pred ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc--cceeecCCccCCCCeeEEEeCCCC
Q 037120 258 TLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVCHLPLTSLKLASML 314 (489)
Q Consensus 258 ~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~ 314 (489)
+|.|+.|+|++.+|++||.|++|+|||+.+.+. +.++.. . .||..|+|-|+.
T Consensus 222 pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT--i---apv~rVkWRP~~ 275 (839)
T KOG0269|consen 222 PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT--I---APVGRVKWRPAR 275 (839)
T ss_pred ceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee--c---ceeeeeeeccCc
Confidence 999999999999999999999999999987654 333321 1 236666666543
No 90
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=7.2e-23 Score=176.44 Aligned_cols=302 Identities=16% Similarity=0.167 Sum_probs=214.5
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.+..|..||..++-......+.+++.|.+.+||.++++.|... +.||.+. |.+++|++.+. +
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~--------------Y~GH~GS---VNsikfh~s~~-L 204 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT--------------YTGHTGS---VNSIKFHNSGL-L 204 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeeccccceee--------------ecccccc---eeeEEeccccc-e
Confidence 4677889999999988888999999999999999999887762 3677777 99999999875 8
Q ss_pred EEEEecCCCEEEEEEec------cC------CCCC----------------ceeeeeceeeeeecCCcccCeeEEEEecC
Q 037120 171 VACASTRSNVVSIYDIG------YI------SDEP----------------VEVLKTRRSVTVVGSDVQKGLSDLAFSAV 222 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~------~~------~~~~----------------~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 222 (489)
+++++.| ++-.||... .. +++. ..--...+..+..+.+|...|.+..|...
T Consensus 205 ~lTaSGD-~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g 283 (481)
T KOG0300|consen 205 LLTASGD-ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG 283 (481)
T ss_pred EEEccCC-cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC
Confidence 8888888 999999721 10 0000 00011345566778999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-cccceeecCCccC
Q 037120 223 NTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGG-RTSAPFHNHKEVC 301 (489)
Q Consensus 223 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~-~~~~~~~~~~~~~ 301 (489)
++ .+++++.|.+..+||+++++ .+..+.+|....+.++-+|+.+++++.+.|.+.++||.|.. ..+..|++|.+.
T Consensus 284 g~-Q~vTaSWDRTAnlwDVEtge--~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt- 359 (481)
T KOG0300|consen 284 GQ-QMVTASWDRTANLWDVETGE--VVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT- 359 (481)
T ss_pred cc-eeeeeeccccceeeeeccCc--eeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccc-
Confidence 98 99999999999999999998 78888899999999999999999999999999999999953 238889999988
Q ss_pred CCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccc
Q 037120 302 HLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSA 381 (489)
Q Consensus 302 ~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (489)
|+++.|..+.+.+.. .++..+ +++++..-. ..+. ....+.
T Consensus 360 ---VTS~vF~~dd~vVSg------------------SDDrTv----------KvWdLrNMR-splA----TIRtdS---- 399 (481)
T KOG0300|consen 360 ---VTSVVFNTDDRVVSG------------------SDDRTV----------KVWDLRNMR-SPLA----TIRTDS---- 399 (481)
T ss_pred ---eeEEEEecCCceeec------------------CCCceE----------EEeeecccc-Ccce----eeecCC----
Confidence 999999887665532 111111 122211100 0000 000000
Q ss_pred cccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCC-
Q 037120 382 DQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLN- 460 (489)
Q Consensus 382 ~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~- 460 (489)
....+ -...|..+++.--++..|++||++.. .+..+..-.+ .+|..-|.|+||.-.-
T Consensus 400 ---~~NRv-avs~g~~iIAiPhDNRqvRlfDlnG~-----------RlaRlPrtsR-------qgHrRMV~c~AW~eehp 457 (481)
T KOG0300|consen 400 ---PANRV-AVSKGHPIIAIPHDNRQVRLFDLNGN-----------RLARLPRTSR-------QGHRRMVTCCAWLEEHP 457 (481)
T ss_pred ---cccee-EeecCCceEEeccCCceEEEEecCCC-----------ccccCCcccc-------cccceeeeeeeccccCc
Confidence 00000 01112434444445569999999865 2223321112 2899999999996443
Q ss_pred -CeEEeccCcceeEEEec
Q 037120 461 -NTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 461 -~~i~sgs~dg~i~v~~~ 477 (489)
..+.++|-|.++.=|..
T Consensus 458 ~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 458 ACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred ccccccccccceeeeeEe
Confidence 46889999999888864
No 91
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=6.3e-22 Score=170.38 Aligned_cols=276 Identities=12% Similarity=0.154 Sum_probs=185.8
Q ss_pred CCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 96 KPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
+.+|+.+.|+|.++.|+++++||++++||+....... . .-|..+ +.+++|.++. .+++|+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~--------~-------~~~~~p---lL~c~F~d~~--~~~~G~ 72 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL--------K-------FKHGAP---LLDCAFADES--TIVTGG 72 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh--------h-------eecCCc---eeeeeccCCc--eEEEec
Confidence 5679999999999999999999999999998731111 0 123334 9999999864 677788
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCC
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
.| |.|+.+|++..... .+..|..+|.+|.+.+-.. .+++||.|++|++||.|... +...+ ..
T Consensus 73 ~d-g~vr~~Dln~~~~~-------------~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~--~~~~~-d~ 134 (323)
T KOG1036|consen 73 LD-GQVRRYDLNTGNED-------------QIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKV--VVGTF-DQ 134 (323)
T ss_pred cC-ceEEEEEecCCcce-------------eeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccc--ccccc-cc
Confidence 77 99999999554322 1155889999999998776 99999999999999999733 23222 22
Q ss_pred CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEE
Q 037120 256 HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSID 335 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~ 335 (489)
...|.|+.. .++.|++|+.|..+.+||+|+........... -.-+++++++-|++.-++....+. . ..+.
T Consensus 135 ~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~--lkyqtR~v~~~pn~eGy~~sSieG-----R-VavE 204 (323)
T KOG1036|consen 135 GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESS--LKYQTRCVALVPNGEGYVVSSIEG-----R-VAVE 204 (323)
T ss_pred CceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhcccc--ceeEEEEEEEecCCCceEEEeecc-----e-EEEE
Confidence 347777776 57889999999999999999976533222111 112378888888654332111000 0 1111
Q ss_pred e-CCC-----CCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEE
Q 037120 336 L-DPS-----CSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIH 409 (489)
Q Consensus 336 ~-~p~-----~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~ 409 (489)
| +++ .+|..-++... ........++..++|+|- -..++||+.||.|.
T Consensus 205 ~~d~s~~~~skkyaFkCHr~~--------------------------~~~~~~~yPVNai~Fhp~-~~tfaTgGsDG~V~ 257 (323)
T KOG1036|consen 205 YFDDSEEAQSKKYAFKCHRLS--------------------------EKDTEIIYPVNAIAFHPI-HGTFATGGSDGIVN 257 (323)
T ss_pred ccCCchHHhhhceeEEeeecc--------------------------cCCceEEEEeceeEeccc-cceEEecCCCceEE
Confidence 1 111 01111111100 000111133455666666 45678889999999
Q ss_pred EEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccC
Q 037120 410 LLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTK 468 (489)
Q Consensus 410 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~ 468 (489)
+||..+. +.+..+. .....|.+++|+-+|..||.++.
T Consensus 258 ~Wd~~~r----------Krl~q~~------------~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 258 IWDLFNR----------KRLKQLA------------KYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EccCcch----------hhhhhcc------------CCCCceEEEEeccCCCeEEEEec
Confidence 9999988 6776766 67778999999999999998864
No 92
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.6e-24 Score=205.50 Aligned_cols=239 Identities=15% Similarity=0.265 Sum_probs=198.2
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+-.|...|.|+..-..++.+++|+.|..+-+|.+.. ..+...+.+|... |.+|.|++.. .+|
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k--------------p~~i~S~~~hesp---IeSl~f~~~E-~Ll 85 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK--------------PNAITSLTGHESP---IESLTFDTSE-RLL 85 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccC--------------CchhheeeccCCc---ceeeecCcch-hhh
Confidence 344556688888877889999999999999998876 2333346778887 9999999986 488
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++|+.+ |+|++||+... . .+.++.||...+.++.|+|.+. ++++|+.|+.+++||++... |...
T Consensus 86 aagsas-gtiK~wDleeA-----k-------~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~G--c~~~ 149 (825)
T KOG0267|consen 86 AAGSAS-GTIKVWDLEEA-----K-------IVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKG--CSHT 149 (825)
T ss_pred cccccC-Cceeeeehhhh-----h-------hhhhhhccccCcceeeeccceE-EeccccccccceehhhhccC--ceee
Confidence 888877 99999999322 1 2235689999999999999999 88999999999999999655 8888
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
+.+|...|.++.|+|+|++++.++.|.+++|||+..|+.+..|+.|.+. +.++.|+|.
T Consensus 150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~----v~sle~hp~------------------ 207 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGK----VQSLEFHPL------------------ 207 (825)
T ss_pred ecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccccc----ccccccCch------------------
Confidence 8899999999999999999999999999999999999999999998866 555443321
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
..++.+||.|+++++|
T Consensus 208 ----------------------------------------------------------------e~Lla~Gs~d~tv~f~ 223 (825)
T KOG0267|consen 208 ----------------------------------------------------------------EVLLAPGSSDRTVRFW 223 (825)
T ss_pred ----------------------------------------------------------------hhhhccCCCCceeeee
Confidence 4456789999999999
Q ss_pred eccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCccee
Q 037120 412 DFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSL 472 (489)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i 472 (489)
|+.+. +.+...+ +....|.+.+|.|++..+++|-+....
T Consensus 224 dletf----------e~I~s~~------------~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 224 DLETF----------EVISSGK------------PETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred cccee----------EEeeccC------------CccCCceeeeecCCceeeecCchhhhh
Confidence 99988 7777766 678899999999999988888765443
No 93
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.91 E-value=1.5e-22 Score=177.80 Aligned_cols=263 Identities=14% Similarity=0.145 Sum_probs=196.4
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|.|+.|+.+|.+||||..+|.|+||...++...... . .+..+|.=+.|+|.. .+|
T Consensus 102 ltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~--------~---------~e~~dieWl~WHp~a-~il 163 (399)
T KOG0296|consen 102 LTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL--------D---------QEVEDIEWLKWHPRA-HIL 163 (399)
T ss_pred ecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe--------e---------cccCceEEEEecccc-cEE
Confidence 4567788999999999999999999999999999985444321 0 111125558999976 488
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++|+.| |.+.+|.+... ...+. +.||+.++++-.|.|+|+ .++++..||+|++||..++. .+..
T Consensus 164 lAG~~D-GsvWmw~ip~~--------~~~kv----~~Gh~~~ct~G~f~pdGK-r~~tgy~dgti~~Wn~ktg~--p~~~ 227 (399)
T KOG0296|consen 164 LAGSTD-GSVWMWQIPSQ--------ALCKV----MSGHNSPCTCGEFIPDGK-RILTGYDDGTIIVWNPKTGQ--PLHK 227 (399)
T ss_pred EeecCC-CcEEEEECCCc--------ceeeE----ecCCCCCcccccccCCCc-eEEEEecCceEEEEecCCCc--eeEE
Confidence 888888 99999999322 11233 389999999999999999 99999999999999999986 3322
Q ss_pred cc-CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee--------cCCccCCCCeeEEEeCCCCcce---e-
Q 037120 252 ST-GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH--------NHKEVCHLPLTSLKLASMLEKI---G- 318 (489)
Q Consensus 252 ~~-~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~--------~~~~~~~~~v~~l~~~~~~~~i---~- 318 (489)
.. .......++.++..+..++.|..++.+++-...+|+.+.... .+... +.++.+.|....+ +
T Consensus 228 ~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~----~esve~~~~ss~lpL~A~ 303 (399)
T KOG0296|consen 228 ITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEEL----DESVESIPSSSKLPLAAC 303 (399)
T ss_pred ecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhh----hhhhhhcccccccchhhc
Confidence 22 224567899999999999999999999999988888755554 23333 5555555544433 1
Q ss_pred -ec-------------cccceeeccceeEEEeCCCCCeEEEEEecCC---ce----EEEEeeccceeeecCCCCCCcCCC
Q 037120 319 -TL-------------KAQSKIVSQEIHSIDLDPSCSYQLAFHLDDG---WS----GVLDVYNSRVSHVHCPPPAWLSDS 377 (489)
Q Consensus 319 -~~-------------~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~---w~----~~~~~~~~~~~~~~~~~~~~~~~~ 377 (489)
++ -+..-.+..+|..+.|.+ ..++++++.++. |. .+.-.|.||...+++. ..+++
T Consensus 304 G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f--~ls~~- 379 (399)
T KOG0296|consen 304 GSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDF--ALSPQ- 379 (399)
T ss_pred ccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEE--EEcCC-
Confidence 10 122234567899999988 789999988877 53 5667788888777654 33444
Q ss_pred CccccccCCCcceeecCCcEEEEeecCCCcEEEEecc
Q 037120 378 NNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFF 414 (489)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~ 414 (489)
..+++++|.|++.+|+++.
T Consensus 380 ------------------~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 380 ------------------KRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ------------------CcEEEEecCCCeEEEEecC
Confidence 7899999999999999874
No 94
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=5.2e-23 Score=187.44 Aligned_cols=285 Identities=15% Similarity=0.162 Sum_probs=191.4
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
|.+-|.++.+|...+++.||+. |.|+|||+...... ....+..+ . .....|.++...|++. -|++|
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k---------~PvsqLdc--l-~rdnyiRSckL~pdgr-tLivG 483 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK---------SPVSQLDC--L-NRDNYIRSCKLLPDGR-TLIVG 483 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC---------Cccccccc--c-CcccceeeeEecCCCc-eEEec
Confidence 4445889999999999999985 67999999862111 11111111 1 1122289999999997 45555
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
++- .++.|||+..........+ ..-.....+++.+||.+ +.++|..||.|.|||++... .++.+.+
T Consensus 484 Gea-stlsiWDLAapTprikael----------tssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~--~VrqfqG 549 (705)
T KOG0639|consen 484 GEA-STLSIWDLAAPTPRIKAEL----------TSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQT--LVRQFQG 549 (705)
T ss_pred ccc-ceeeeeeccCCCcchhhhc----------CCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccce--eeecccC
Confidence 555 8999999954322211111 11223567889999999 88888899999999999865 7888899
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEE
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSI 334 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~ 334 (489)
|.+.+.||.++++|..|-+||-|++||.||+|.++.+.. |.-. ..|.+|.++|.+.
T Consensus 550 htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq---hdF~--SQIfSLg~cP~~d------------------- 605 (705)
T KOG0639|consen 550 HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ---HDFS--SQIFSLGYCPTGD------------------- 605 (705)
T ss_pred CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh---hhhh--hhheecccCCCcc-------------------
Confidence 999999999999999999999999999999999875333 2211 1155555555554
Q ss_pred EeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEecc
Q 037120 335 DLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFF 414 (489)
Q Consensus 335 ~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~ 414 (489)
++++... ++...++.....+...++....+. -.+.|.+. +.++++.+.|+-+..|...
T Consensus 606 -------WlavGMe-ns~vevlh~skp~kyqlhlheScV-------------LSlKFa~c-GkwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 606 -------WLAVGME-NSNVEVLHTSKPEKYQLHLHESCV-------------LSLKFAYC-GKWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred -------ceeeecc-cCcEEEEecCCccceeecccccEE-------------EEEEeccc-CceeeecCchhhhhhccCc
Confidence 4333222 221122222222221111111010 11122222 7788888999999999998
Q ss_pred CCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 415 PGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
.+ ..+...+ -...|+++..+-++++|+||+.|....||.
T Consensus 664 yG----------asiFqsk-------------E~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 664 YG----------ASIFQSK-------------ESSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred cc----------cceeecc-------------ccCcceeeeeccCceEEEecCCCcceEEEE
Confidence 88 5554443 567899999999999999999998888774
No 95
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.4e-22 Score=181.92 Aligned_cols=266 Identities=18% Similarity=0.232 Sum_probs=186.9
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..|.|++-+|+|.+|+.|+..|.|++|.+.++.... .+ ..|... |+|+.|+-|+. ++++|+.
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~--------v~------~aHYQ~---ITcL~fs~dgs-~iiTgsk 143 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN--------VL------SAHYQS---ITCLKFSDDGS-HIITGSK 143 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEeccccHHH--------HH------Hhhccc---eeEEEEeCCCc-EEEecCC
Confidence 459999999999999999999999999999966655 23 334444 99999999986 8889999
Q ss_pred CCCEEEEEEeccCCC-CCceeeeeceeeeeecCCcccCeeEEEEecCCC-cEEEEEeCCCcEEEEECCCCCcCceeeccC
Q 037120 177 RSNVVSIYDIGYISD-EPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT-SRLIASDTHGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 177 d~g~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
| |.|.+|++..--. .......+... +.+|+-+|+++...+.+. ..++|+|.|.++++||+..+. .+..+ .
T Consensus 144 D-g~V~vW~l~~lv~a~~~~~~~p~~~----f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~--LLlti-~ 215 (476)
T KOG0646|consen 144 D-GAVLVWLLTDLVSADNDHSVKPLHI----FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV--LLLTI-T 215 (476)
T ss_pred C-ccEEEEEEEeecccccCCCccceee----eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce--eeEEE-e
Confidence 8 9999999853211 11122333333 499999999999887643 389999999999999999986 33222 3
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEE
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSI 334 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~ 334 (489)
-...+.+++.+|-+..+++|+.+|.|.+.++.+... .... |..=.+++++..+.
T Consensus 216 fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~------~~~~----v~~k~~~~~~t~~~---------------- 269 (476)
T KOG0646|consen 216 FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSG------QSAG----VNQKGRHEENTQIN---------------- 269 (476)
T ss_pred cCCcceeEEEcccccEEEecCCcceEEeeehhcCCc------cccc----ccccccccccceee----------------
Confidence 357899999999999999999999999998875331 0111 11111222221111
Q ss_pred EeCCCCCeEEEEEecCCceEEEEeecccee--eecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEe
Q 037120 335 DLDPSCSYQLAFHLDDGWSGVLDVYNSRVS--HVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLD 412 (489)
Q Consensus 335 ~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd 412 (489)
.+.||.. .+.|. +.+.+ +.+|++|++||.++|||
T Consensus 270 -----------------------~~~Gh~~~~~ITcL--ais~D-------------------gtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 270 -----------------------VLVGHENESAITCL--AISTD-------------------GTLLLSGDEDGKVCVWD 305 (476)
T ss_pred -----------------------eeccccCCcceeEE--EEecC-------------------ccEEEeeCCCCCEEEEe
Confidence 1112222 22222 22223 77899999999999999
Q ss_pred ccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEe-ccCcceeEEEecccc
Q 037120 413 FFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVA-GTKNSSLLVVSQKQQ 480 (489)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~s-gs~dg~i~v~~~~~~ 480 (489)
+.+. +.++.+. ...++|+-+.+.|..+.+.. -.....+.++..|++
T Consensus 306 i~S~----------Q~iRtl~------------~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lkr~ 352 (476)
T KOG0646|consen 306 IYSK----------QCIRTLQ------------TSKGPVTNLQINPLERGIILFEHKQPSLPNPHLKRM 352 (476)
T ss_pred cchH----------HHHHHHh------------hhccccceeEeeccccceecccccCccCCchHhhcc
Confidence 9999 8888876 56788999999887664443 344445555554443
No 96
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=4.7e-23 Score=177.06 Aligned_cols=177 Identities=12% Similarity=0.288 Sum_probs=140.3
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|+++.|+|....|++|+.|++|++||+......... ..-... ..|.++.|+|.|. +|
T Consensus 168 lYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~------K~~qd~---------~~vrsiSfHPsGe-fl 231 (430)
T KOG0640|consen 168 LYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAF------KVFQDT---------EPVRSISFHPSGE-FL 231 (430)
T ss_pred hhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHH------HHhhcc---------ceeeeEeecCCCc-eE
Confidence 5557778999999999999999999999999999873332211 111112 2299999999997 44
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
+.|.. ..++++||+++. +.+.... +-.+|++.|+++.+++.+. +.+|++.||.|++||--+++ |++.
T Consensus 232 lvgTd-Hp~~rlYdv~T~-----Qcfvsan----Pd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~r--Cv~t 298 (430)
T KOG0640|consen 232 LVGTD-HPTLRLYDVNTY-----QCFVSAN----PDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNR--CVRT 298 (430)
T ss_pred EEecC-CCceeEEeccce-----eEeeecC----cccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHH--HHHH
Confidence 45554 489999999432 3322222 2377999999999999999 99999999999999987766 7766
Q ss_pred cc-CCC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecC
Q 037120 252 ST-GSH-GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNH 297 (489)
Q Consensus 252 ~~-~h~-~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 297 (489)
+. +|. ..|.+..|..+|+++++.|.|..+++|.+.+++.+..+.+.
T Consensus 299 ~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 299 IGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred HHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecC
Confidence 65 554 56899999999999999999999999999999998888764
No 97
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2.6e-22 Score=181.27 Aligned_cols=166 Identities=16% Similarity=0.214 Sum_probs=132.1
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
.|...|.+++.++||+|||+|+.|..|.||+.++.+.+. .+.+|.+. |.+++|-... ..+++
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~--------------~~~ghr~~---V~~L~fr~gt-~~lys 261 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK--------------VFKGHRGA---VSSLAFRKGT-SELYS 261 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhh--------------cccccccc---eeeeeeecCc-cceee
Confidence 344559999999999999999999999999999944443 35778888 8889998654 46677
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST 253 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 253 (489)
++.| ++|++|++.. ..++.++.||.+.|.+|.-..-.. .+..|+.|+++++|++.... -.++.
T Consensus 262 ~s~D-rsvkvw~~~~------------~s~vetlyGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~ees---qlifr 324 (479)
T KOG0299|consen 262 ASAD-RSVKVWSIDQ------------LSYVETLYGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPEES---QLIFR 324 (479)
T ss_pred eecC-CceEEEehhH------------hHHHHHHhCCccceeeechhcccc-eEEeccccceeEEEeccccc---eeeee
Confidence 7777 9999999932 224445699999999998887776 66666699999999995433 22456
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~ 295 (489)
+|.+.+-|++|-. ..++++|+.+|.|.||++.+.+.+.+..
T Consensus 325 g~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 325 GGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred CCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEee
Confidence 8899999999975 4567999999999999999877766655
No 98
>PTZ00420 coronin; Provisional
Probab=99.90 E-value=2.6e-21 Score=190.34 Aligned_cols=171 Identities=19% Similarity=0.193 Sum_probs=129.6
Q ss_pred cccCCCceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..|...|.+++|+|+ +.+||+|+.||+|+|||+.+....... ...+...+.+|... |.+++|+|++..+
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~------i~~p~~~L~gH~~~---V~sVaf~P~g~~i 140 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE------IKDPQCILKGHKKK---ISIIDWNPMNYYI 140 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc------cccceEEeecCCCc---EEEEEECCCCCeE
Confidence 5567778999999997 789999999999999999763211000 01122234557666 9999999998878
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
+++++.| ++|+|||++... .+ ..+ . |...|.+++|+|+|. +|++++.|+.|+|||+++++ .+.
T Consensus 141 LaSgS~D-gtIrIWDl~tg~-----~~---~~i----~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~--~i~ 203 (568)
T PTZ00420 141 MCSSGFD-SFVNIWDIENEK-----RA---FQI----N-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQE--IAS 203 (568)
T ss_pred EEEEeCC-CeEEEEECCCCc-----EE---EEE----e-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCc--EEE
Confidence 8888888 999999995331 11 111 2 456899999999999 99999999999999999876 556
Q ss_pred eccCCCCceeEE-----EEeecCCEEEEEeCCC----eEEEEEcCCC
Q 037120 251 LSTGSHGTLNSI-----QLHAENQIIFAAGKHG----SIYLWDLRGG 288 (489)
Q Consensus 251 ~~~~h~~~v~~~-----~~~p~~~~l~~~~~dg----~i~lwd~~~~ 288 (489)
.+.+|.+.+.+. .|++++.+++++|.|+ .|+|||+++.
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence 677888765443 3458889999988764 7999999963
No 99
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.90 E-value=1.2e-21 Score=175.69 Aligned_cols=249 Identities=17% Similarity=0.172 Sum_probs=183.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
|.+|...|+.+.|+|+...+++++.|-.|+||......+.. ....|... |+.+..+|.+. .|
T Consensus 257 ~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~--------------~~~~h~~~---V~~ls~h~tge-Yl 318 (506)
T KOG0289|consen 257 LKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT--------------SSRPHEEP---VTGLSLHPTGE-YL 318 (506)
T ss_pred ccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc--------------cccccccc---ceeeeeccCCc-EE
Confidence 56677779999999999999999999999999987733222 12345555 88899999997 56
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| ++..+.|++.+. .+.... -....-.+++.+|+|||. +|.+|..|+.|+|||+.++. .+..
T Consensus 319 lsAs~d-~~w~Fsd~~~g~-----~lt~vs-----~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~--~~a~ 384 (506)
T KOG0289|consen 319 LSASND-GTWAFSDISSGS-----QLTVVS-----DETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQT--NVAK 384 (506)
T ss_pred EEecCC-ceEEEEEccCCc-----EEEEEe-----eccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCcc--cccc
Confidence 667766 999999995442 221111 011223689999999999 99999999999999999876 5567
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
+.+|+++|.+++|+.+|-++++++.|+.|++||+|..+..+++...... ++
T Consensus 385 Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-----------------------------~v 435 (506)
T KOG0289|consen 385 FPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-----------------------------EV 435 (506)
T ss_pred CCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-----------------------------cc
Confidence 7899999999999999999999999999999999998766666532211 22
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
.++.|++. |.|++.++.|=.|+++
T Consensus 436 ~s~~fD~S--------------------------------------------------------Gt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 436 NSLSFDQS--------------------------------------------------------GTYLGIAGSDLQVYIC 459 (506)
T ss_pred eeEEEcCC--------------------------------------------------------CCeEEeecceeEEEEE
Confidence 33334333 3444444455455555
Q ss_pred eccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 412 DFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
+-.+. .+ ..+..+. .|.+..+++.|.-...+++++|.|..++|++.
T Consensus 460 ~k~~k-~W-------~~~~~~~------------~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 460 KKKTK-SW-------TEIKELA------------DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ecccc-cc-------eeeehhh------------hcccccceeeecccceEEeeccchhheEEeec
Confidence 43332 00 2333344 68888999999988899999999999999864
No 100
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.2e-22 Score=172.34 Aligned_cols=292 Identities=13% Similarity=0.166 Sum_probs=190.2
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
-.|+.|++-|.+||+|+.||.|.|||+.+..... .+.+|... |++++|++++. +|++++.|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar--------------~lsaH~~p---i~sl~WS~dgr-~LltsS~D- 86 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR--------------MLSAHVRP---ITSLCWSRDGR-KLLTSSRD- 86 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh--------------hhhccccc---eeEEEecCCCC-EeeeecCC-
Confidence 6799999999999999999999999999844322 22445555 99999999996 78888888
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc--CCC
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST--GSH 256 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~h~ 256 (489)
..|.+||+..+. .++..+ -..+|+.+.|+|...+.++.+-.+..-.+-++..+...++..-. .-+
T Consensus 87 ~si~lwDl~~gs-----~l~rir--------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln 153 (405)
T KOG1273|consen 87 WSIKLWDLLKGS-----PLKRIR--------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLN 153 (405)
T ss_pred ceeEEEeccCCC-----ceeEEE--------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccc
Confidence 999999995543 222222 23589999999988877777766666667777654332321111 111
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCC-ccCCCCeeEEEeCCCCcceeeccccceeeccceeEEE
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHK-EVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSID 335 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~ 335 (489)
..-.+..|++.|+++++|...|.+.++|..+.+++..++-.. .. |.++.++..
T Consensus 154 ~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~----IK~I~~s~~---------------------- 207 (405)
T KOG1273|consen 154 SSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQA----IKQIIVSRK---------------------- 207 (405)
T ss_pred cccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechhee----eeEEEEecc----------------------
Confidence 122344689999999999999999999999988776665322 22 445544444
Q ss_pred eCCCCCeEEEEEecCCceEEEEeeccce-eee---cCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 336 LDPSCSYQLAFHLDDGWSGVLDVYNSRV-SHV---HCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 336 ~~p~~~~~~~~~~~~~w~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
+++++..+.|. ++.+|...- ... ..+.+..... .......-+..+|+.+|..++++.+....++||
T Consensus 208 ----g~~liiNtsDR----vIR~ye~~di~~~~r~~e~e~~~K~q--DvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIW 277 (405)
T KOG1273|consen 208 ----GRFLIINTSDR----VIRTYEISDIDDEGRDGEVEPEHKLQ--DVVNKLQWKKCCFSGDGEYVCAGSARAHALYIW 277 (405)
T ss_pred ----CcEEEEecCCc----eEEEEehhhhcccCccCCcChhHHHH--HHHhhhhhhheeecCCccEEEeccccceeEEEE
Confidence 44444433332 233332110 000 0000000000 000001123345666555555555555689999
Q ss_pred eccCCCCCCeeeccCcccchhhHhhhhcccCCcccCC-CceEEEEeeCCCCeEEeccCcceeEEEeccccc
Q 037120 412 DFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLS-EGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~ 481 (489)
.-..+ ..++.+. |-. +....|.|||..+.|++- ..|.+.+|++....
T Consensus 278 E~~~G----------sLVKILh------------G~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 278 EKSIG----------SLVKILH------------GTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE 325 (405)
T ss_pred ecCCc----------ceeeeec------------CCchhheeecccccceeeeeec-cCCceEEEEeeccc
Confidence 99999 8888777 665 678999999999999988 77999999876543
No 101
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.90 E-value=2.3e-22 Score=177.35 Aligned_cols=195 Identities=16% Similarity=0.238 Sum_probs=148.0
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCC-----------CCCCCCCcccccccccCCCCCCceeEE
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNG-----------TLPGVGLKEDQSKHLLHIPLPQQLDAV 161 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~-----------~~~~~g~~~~~~~~~~h~~~~~~V~~v 161 (489)
.+|+.+|-+++..++|..+++|+.|..|.||+.+.......+ .....|.-.+...+.||+.. |.+|
T Consensus 190 ~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~---Vs~V 266 (423)
T KOG0313|consen 190 RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEP---VSSV 266 (423)
T ss_pred cccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccc---eeeE
Confidence 367778999999999999999999999999994332111100 11112344555667789998 8999
Q ss_pred EeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEEC
Q 037120 162 RWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDR 241 (489)
Q Consensus 162 ~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~ 241 (489)
.|++. ..+.+++.| .+|+.||+..+... ..+. -...++++..+|... +|++|+.|..+++||.
T Consensus 267 ~w~d~--~v~yS~SwD-HTIk~WDletg~~~--~~~~-----------~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 267 VWSDA--TVIYSVSWD-HTIKVWDLETGGLK--STLT-----------TNKSLNCISYSPLSK-LLASGSSDRHIRLWDP 329 (423)
T ss_pred EEcCC--CceEeeccc-ceEEEEEeecccce--eeee-----------cCcceeEeecccccc-eeeecCCCCceeecCC
Confidence 99984 478888888 99999999554322 1111 224789999999888 9999999999999999
Q ss_pred CCCCcC-ceeeccCCCCceeEEEEeecCCEEE-EEeCCCeEEEEEcCCCc-ccceeecCCccCCCCeeEEEeC
Q 037120 242 RVGVLP-SLELSTGSHGTLNSIQLHAENQIIF-AAGKHGSIYLWDLRGGR-TSAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 242 ~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~-~~~~dg~i~lwd~~~~~-~~~~~~~~~~~~~~~v~~l~~~ 311 (489)
|++... +.+.+.+|++.|.++.|+|.+.+++ +|+.|+++++||+|+.+ .++.+.+|.+. |-++.|.
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK----vl~vdW~ 398 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK----VLSVDWN 398 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce----EEEEecc
Confidence 998544 4556779999999999999887655 55669999999999977 58888887655 5555443
No 102
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=2.3e-23 Score=179.96 Aligned_cols=207 Identities=12% Similarity=0.209 Sum_probs=168.7
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
+.|..|+||++ .|++|+.| |-|.+||...++-...-..+....+ .-|.++|.++.|+.|.. ++++|+.||.|+
T Consensus 216 ~EcA~FSPDgq-yLvsgSvD-GFiEVWny~~GKlrKDLkYQAqd~f----MMmd~aVlci~FSRDsE-MlAsGsqDGkIK 288 (508)
T KOG0275|consen 216 VECARFSPDGQ-YLVSGSVD-GFIEVWNYTTGKLRKDLKYQAQDNF----MMMDDAVLCISFSRDSE-MLASGSQDGKIK 288 (508)
T ss_pred hhheeeCCCCc-eEeecccc-ceeeeehhccchhhhhhhhhhhcce----eecccceEEEeecccHH-HhhccCcCCcEE
Confidence 78899999996 88899998 9999999965543311111122222 44778999999999999 999999999999
Q ss_pred EEECCCCCcCceeecc-CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcc
Q 037120 238 IWDRRVGVLPSLELST-GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEK 316 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 316 (489)
+|.++++. |++.+. +|+..|+|+.|+.|+..+++++.|.++++--+.+|++++.|.+|... |+...|.+|
T Consensus 289 vWri~tG~--ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSy----vn~a~ft~d--- 359 (508)
T KOG0275|consen 289 VWRIETGQ--CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSY----VNEATFTDD--- 359 (508)
T ss_pred EEEEecch--HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccc----ccceEEcCC---
Confidence 99999998 888877 99999999999999999999999999999999999999999999865 444433322
Q ss_pred eeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCc
Q 037120 317 IGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNS 396 (489)
Q Consensus 317 i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (489)
+
T Consensus 360 -------------------------------------------------------------------------------G 360 (508)
T KOG0275|consen 360 -------------------------------------------------------------------------------G 360 (508)
T ss_pred -------------------------------------------------------------------------------C
Confidence 5
Q ss_pred EEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC-eEEeccCcceeEEE
Q 037120 397 IYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN-TIVAGTKNSSLLVV 475 (489)
Q Consensus 397 ~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~-~i~sgs~dg~i~v~ 475 (489)
.+++++|.||+|+||+..+. +++..+... +..-+|+.+-.-|.++ .++.|....++.|+
T Consensus 361 ~~iisaSsDgtvkvW~~Ktt----------eC~~Tfk~~----------~~d~~vnsv~~~PKnpeh~iVCNrsntv~im 420 (508)
T KOG0275|consen 361 HHIISASSDGTVKVWHGKTT----------ECLSTFKPL----------GTDYPVNSVILLPKNPEHFIVCNRSNTVYIM 420 (508)
T ss_pred CeEEEecCCccEEEecCcch----------hhhhhccCC----------CCcccceeEEEcCCCCceEEEEcCCCeEEEE
Confidence 66788899999999999998 887776622 5667899999988774 88888888888886
Q ss_pred eccc
Q 037120 476 SQKQ 479 (489)
Q Consensus 476 ~~~~ 479 (489)
.-..
T Consensus 421 n~qG 424 (508)
T KOG0275|consen 421 NMQG 424 (508)
T ss_pred eccc
Confidence 4433
No 103
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.4e-22 Score=168.59 Aligned_cols=216 Identities=13% Similarity=0.169 Sum_probs=160.6
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec--CCCcEEEEEeCCCc
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA--VNTSRLIASDTHGV 235 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~s~dg~ 235 (489)
|..+...-.+. .|++++.| ++|+|+.++.... .....+|.||.++|+.++|-. .|. +|++++.||.
T Consensus 14 IHda~lDyygk-rlATcsSD-~tVkIf~v~~n~~---------s~ll~~L~Gh~GPVwqv~wahPk~G~-iLAScsYDgk 81 (299)
T KOG1332|consen 14 IHDAQLDYYGK-RLATCSSD-GTVKIFEVRNNGQ---------SKLLAELTGHSGPVWKVAWAHPKFGT-ILASCSYDGK 81 (299)
T ss_pred hhHhhhhhhcc-eeeeecCC-ccEEEEEEcCCCC---------ceeeeEecCCCCCeeEEeecccccCc-EeeEeecCce
Confidence 44455554554 78888888 9999999954432 123445699999999999965 566 9999999999
Q ss_pred EEEEECCCCCcCceeeccCCCCceeEEEEeec--CCEEEEEeCCCeEEEEEcCCC-cc--cceeecCCccCCCCeeEEEe
Q 037120 236 VNIWDRRVGVLPSLELSTGSHGTLNSIQLHAE--NQIIFAAGKHGSIYLWDLRGG-RT--SAPFHNHKEVCHLPLTSLKL 310 (489)
Q Consensus 236 i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~l~~~~~dg~i~lwd~~~~-~~--~~~~~~~~~~~~~~v~~l~~ 310 (489)
|.||.-..+..........|+..|++++|.|. |-.|+++++||.|.|.+.+.. .- .+....|.-. |++++|
T Consensus 82 VIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G----vnsVsw 157 (299)
T KOG1332|consen 82 VIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG----VNSVSW 157 (299)
T ss_pred EEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc----cceeee
Confidence 99999888765444456699999999999986 567888899999999998874 11 4445577766 888888
Q ss_pred CCC---CcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCC
Q 037120 311 ASM---LEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLR 387 (489)
Q Consensus 311 ~~~---~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (489)
.|. |..+.. + ...
T Consensus 158 apa~~~g~~~~~--------------------~---------------------------------~~~----------- 173 (299)
T KOG1332|consen 158 APASAPGSLVDQ--------------------G---------------------------------PAA----------- 173 (299)
T ss_pred cCcCCCcccccc--------------------C---------------------------------ccc-----------
Confidence 875 211110 0 000
Q ss_pred cceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCC----CeE
Q 037120 388 KPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLN----NTI 463 (489)
Q Consensus 388 ~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~----~~i 463 (489)
.-+.+++|+.|+.|+||++..+. . .+...+. +|.+.|..+||.|.- ..|
T Consensus 174 -------~~krlvSgGcDn~VkiW~~~~~~-w-------~~e~~l~------------~H~dwVRDVAwaP~~gl~~s~i 226 (299)
T KOG1332|consen 174 -------KVKRLVSGGCDNLVKIWKFDSDS-W-------KLERTLE------------GHKDWVRDVAWAPSVGLPKSTI 226 (299)
T ss_pred -------ccceeeccCCccceeeeecCCcc-h-------hhhhhhh------------hcchhhhhhhhccccCCCceee
Confidence 03568899999999999998760 0 1122345 999999999999976 489
Q ss_pred EeccCcceeEEEecccc
Q 037120 464 VAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 464 ~sgs~dg~i~v~~~~~~ 480 (489)
|+||+||.+.||....+
T Consensus 227 AS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 227 ASCSQDGTVIIWTKDEE 243 (299)
T ss_pred EEecCCCcEEEEEecCc
Confidence 99999999999988743
No 104
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=3e-22 Score=168.28 Aligned_cols=243 Identities=15% Similarity=0.152 Sum_probs=172.5
Q ss_pred cccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEE
Q 037120 148 HLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRL 227 (489)
Q Consensus 148 ~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 227 (489)
..+|... |.+|+|+.+|. .+++|+.| +++.+|++... ..+. .. .+.+|.+.|-.++|+|..+.+|
T Consensus 16 ~~~~~~~---v~Sv~wn~~g~-~lasgs~d-ktv~v~n~e~~-----r~~~-~~----~~~gh~~svdql~w~~~~~d~~ 80 (313)
T KOG1407|consen 16 LQGHVQK---VHSVAWNCDGT-KLASGSFD-KTVSVWNLERD-----RFRK-EL----VYRGHTDSVDQLCWDPKHPDLF 80 (313)
T ss_pred hhhhhhc---ceEEEEcccCc-eeeecccC-CceEEEEecch-----hhhh-hh----cccCCCcchhhheeCCCCCcce
Confidence 3556666 88899999996 88888888 99999999322 1111 11 2388999999999999999899
Q ss_pred EEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeE
Q 037120 228 IASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTS 307 (489)
Q Consensus 228 ~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 307 (489)
++++.|.+|++||+++++ +...... +..-.-+.|+|+|.++++++.|..|.+.|.++.+.+...+- ... +..
T Consensus 81 atas~dk~ir~wd~r~~k--~~~~i~~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e----~ne 152 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGK--CTARIET-KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFE----VNE 152 (313)
T ss_pred EEecCCceEEEEEeccCc--EEEEeec-cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-cce----eee
Confidence 999999999999999987 5544332 34445689999999999999999999999999876555442 222 666
Q ss_pred EEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCC
Q 037120 308 LKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLR 387 (489)
Q Consensus 308 l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (489)
+.|+.++.++.--.. ...|.-+.+ |.= +.+...+.|...-.|+ .|.++
T Consensus 153 ~~w~~~nd~Fflt~G-----lG~v~ILsy-psL-------------kpv~si~AH~snCicI--~f~p~----------- 200 (313)
T KOG1407|consen 153 ISWNNSNDLFFLTNG-----LGCVEILSY-PSL-------------KPVQSIKAHPSNCICI--EFDPD----------- 200 (313)
T ss_pred eeecCCCCEEEEecC-----CceEEEEec-ccc-------------ccccccccCCcceEEE--EECCC-----------
Confidence 777766554421000 000111111 000 0111122333332333 45555
Q ss_pred cceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEecc
Q 037120 388 KPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGT 467 (489)
Q Consensus 388 ~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs 467 (489)
++|+++||.|..+-+||+..- -.+..+. -|.=+|..++|+-++++||+||
T Consensus 201 --------GryfA~GsADAlvSLWD~~EL----------iC~R~is------------RldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 201 --------GRYFATGSADALVSLWDVDEL----------ICERCIS------------RLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred --------CceEeeccccceeeccChhHh----------hhheeec------------cccCceEEEEeccCcceeeccC
Confidence 889999999999999999877 5666666 7888999999999999999999
Q ss_pred CcceeEEE
Q 037120 468 KNSSLLVV 475 (489)
Q Consensus 468 ~dg~i~v~ 475 (489)
+|-.|=|-
T Consensus 251 EDh~IDIA 258 (313)
T KOG1407|consen 251 EDHFIDIA 258 (313)
T ss_pred ccceEEeE
Confidence 99988763
No 105
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=3.4e-22 Score=171.33 Aligned_cols=247 Identities=10% Similarity=0.156 Sum_probs=162.8
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|.+|+|+|....++++++.| |+||+|++.... .+.+ +. ...|.++|.+++|+.+|. .+++|+.|+.++
T Consensus 30 IS~l~FSP~~~~~~~A~SWD-~tVR~wevq~~g-----~~~~-ka----~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k 97 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWD-GTVRIWEVQNSG-----QLVP-KA----QQSHDGPVLDVCWSDDGS-KVFSGGCDKQAK 97 (347)
T ss_pred hheeEeccccCceEEecccC-CceEEEEEecCC-----cccc-hh----hhccCCCeEEEEEccCCc-eEEeeccCCceE
Confidence 89999999777888899999 999999995321 1111 11 166889999999999998 999999999999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeecCC--EEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCc
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQ--IIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~--~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
+||+.+++ ......|.++|.++.|-+... .|++|+.|.+|+.||+|....+.++...+ . +.++..-.
T Consensus 98 ~wDL~S~Q---~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-R----vYa~Dv~~--- 166 (347)
T KOG0647|consen 98 LWDLASGQ---VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-R----VYAADVLY--- 166 (347)
T ss_pred EEEccCCC---eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-e----eeehhccC---
Confidence 99999986 335668999999999987666 78888999999999999877776665422 1 23221110
Q ss_pred ceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCC
Q 037120 316 KIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTN 395 (489)
Q Consensus 316 ~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (489)
++.-++ -.++.++++.+.+.-...-.+... .....|.++-..+.
T Consensus 167 --------------pm~vVa--ta~r~i~vynL~n~~te~k~~~Sp--------------------Lk~Q~R~va~f~d~ 210 (347)
T KOG0647|consen 167 --------------PMAVVA--TAERHIAVYNLENPPTEFKRIESP--------------------LKWQTRCVACFQDK 210 (347)
T ss_pred --------------ceeEEE--ecCCcEEEEEcCCCcchhhhhcCc--------------------ccceeeEEEEEecC
Confidence 111111 123334444443331100000000 00112333444444
Q ss_pred cEEEEeecCCCcEEEEeccCCCC-----CCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcc
Q 037120 396 SIYAVGSSSDHGIHLLDFFPGSS-----SPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNS 470 (489)
Q Consensus 396 ~~~l~sgs~d~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg 470 (489)
..+ +-||-.|.+-|-.+..+.. .+||...+... +.--.|++|+|||.-..|+|.|.||
T Consensus 211 ~~~-alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~----------------~~VYaVNsi~FhP~hgtlvTaGsDG 273 (347)
T KOG0647|consen 211 DGF-ALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVN----------------DDVYAVNSIAFHPVHGTLVTAGSDG 273 (347)
T ss_pred Cce-EeeeecceEEEEecCCCCccCceeEEEeccCCCCC----------------CceEEecceEeecccceEEEecCCc
Confidence 555 4567889888888876511 12333221110 1123699999999999999999999
Q ss_pred eeEEEecccc
Q 037120 471 SLLVVSQKQQ 480 (489)
Q Consensus 471 ~i~v~~~~~~ 480 (489)
++.+|...-+
T Consensus 274 tf~FWDkdar 283 (347)
T KOG0647|consen 274 TFSFWDKDAR 283 (347)
T ss_pred eEEEecchhh
Confidence 9999976543
No 106
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1e-20 Score=162.78 Aligned_cols=275 Identities=13% Similarity=0.140 Sum_probs=178.7
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC-CCCEEEEEe
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA-NQDEVACAS 175 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~-~~~~l~s~~ 175 (489)
.-|.|+.|++.|+.+|+|+.|++|+|||.... . |...-...+..|.+. |..|.|.+. -..++++++
T Consensus 14 DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~----s------~~W~~Ts~Wrah~~S---i~rV~WAhPEfGqvvA~cS 80 (361)
T KOG2445|consen 14 DLIHDVSFDFYGRRMATCSSDQTVKIWDSTSD----S------GTWSCTSSWRAHDGS---IWRVVWAHPEFGQVVATCS 80 (361)
T ss_pred ceeeeeeecccCceeeeccCCCcEEEEeccCC----C------CceEEeeeEEecCCc---EEEEEecCccccceEEEEe
Confidence 34999999999999999999999999997541 1 245556667788888 888999643 334889999
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC-cEEEEEeCCCcEEEEECCCCCc----Ccee
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT-SRLIASDTHGVVNIWDRRVGVL----PSLE 250 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~----~~~~ 250 (489)
.| +++.||.-.....+. .. .......++......|++|+|.|... ..+++++.||.++||+.-.... ....
T Consensus 81 ~D-rtv~iWEE~~~~~~~-~~--~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~ 156 (361)
T KOG2445|consen 81 YD-RTVSIWEEQEKSEEA-HG--RRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH 156 (361)
T ss_pred cC-Cceeeeeeccccccc-cc--ceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh
Confidence 99 999999863111110 00 01112233466778999999999754 3789999999999998754311 1111
Q ss_pred ec-------cCCCCceeEEEEeec---CCEEEEEeCC-----CeEEEEEcCCCc----ccceeecCCccCCCCeeEEEeC
Q 037120 251 LS-------TGSHGTLNSIQLHAE---NQIIFAAGKH-----GSIYLWDLRGGR----TSAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 251 ~~-------~~h~~~v~~~~~~p~---~~~l~~~~~d-----g~i~lwd~~~~~----~~~~~~~~~~~~~~~v~~l~~~ 311 (489)
.+ ..+..+..|+.|+|. .++|++|+.+ +.++||....+. .+.++.+|... |++++|.
T Consensus 157 Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp----I~di~wA 232 (361)
T KOG2445|consen 157 EIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP----IRDISWA 232 (361)
T ss_pred hhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc----ceeeeec
Confidence 11 135667889999974 4456666554 378888765432 14455555544 6666666
Q ss_pred CCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCccee
Q 037120 312 SMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSW 391 (489)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (489)
|.-.. .
T Consensus 233 Pn~Gr-----------------------------------------------------------~--------------- 238 (361)
T KOG2445|consen 233 PNIGR-----------------------------------------------------------S--------------- 238 (361)
T ss_pred cccCC-----------------------------------------------------------c---------------
Confidence 53110 0
Q ss_pred ecCCcEEEEeecCCCcEEEEeccCCCCCC--eeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCc
Q 037120 392 LSTNSIYAVGSSSDHGIHLLDFFPGSSSP--SHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKN 469 (489)
Q Consensus 392 ~~~~~~~l~sgs~d~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~d 469 (489)
-.+++.++.|| |+||.+....... ..+........++ ......+-+|.+.|..+.|.-.|.+|++.|.|
T Consensus 239 ----y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~----v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdD 309 (361)
T KOG2445|consen 239 ----YHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLP----VEKVSELDDHNGEVWRVRWNMTGTILSSTGDD 309 (361)
T ss_pred ----eeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccc----eEEeeeccCCCCceEEEEEeeeeeEEeecCCC
Confidence 33566777888 9999887531000 0000000000000 00111233899999999999999999999999
Q ss_pred ceeEEE
Q 037120 470 SSLLVV 475 (489)
Q Consensus 470 g~i~v~ 475 (489)
|++++|
T Consensus 310 G~VRLW 315 (361)
T KOG2445|consen 310 GCVRLW 315 (361)
T ss_pred ceeeeh
Confidence 999997
No 107
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.2e-21 Score=174.57 Aligned_cols=245 Identities=16% Similarity=0.203 Sum_probs=167.5
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEE
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLI 228 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 228 (489)
..|+.+ |.-+.|+++|. .|++++.| .+.-+|++.... .+ ...+++.+|..+|..+.|+||+. +++
T Consensus 221 ~~htdE---VWfl~FS~nGk-yLAsaSkD-~Taiiw~v~~d~-----~~----kl~~tlvgh~~~V~yi~wSPDdr-yLl 285 (519)
T KOG0293|consen 221 QDHTDE---VWFLQFSHNGK-YLASASKD-STAIIWIVVYDV-----HF----KLKKTLVGHSQPVSYIMWSPDDR-YLL 285 (519)
T ss_pred hhCCCc---EEEEEEcCCCe-eEeeccCC-ceEEEEEEecCc-----ce----eeeeeeecccCceEEEEECCCCC-eEE
Confidence 447777 77799999996 88899988 999999994321 12 23455699999999999999999 999
Q ss_pred EEeCCCcEEEEECCCCCcCceeec-cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeE
Q 037120 229 ASDTHGVVNIWDRRVGVLPSLELS-TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTS 307 (489)
Q Consensus 229 s~s~dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 307 (489)
+|+.|..+.+||+.++. +...+ .+|...+.+++|.|||..+++|+.|++|..||+.. +.+..+++-.. +.|.+
T Consensus 286 aCg~~e~~~lwDv~tgd--~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~---~~v~d 359 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGD--LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRD---PKVHD 359 (519)
T ss_pred ecCchHheeeccCCcch--hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhccccccc---ceeEE
Confidence 99999999999999987 33322 24568899999999999999999999999999974 44555554321 12445
Q ss_pred EEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeec---cceeeecCCCCCCcCCCCcccccc
Q 037120 308 LKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYN---SRVSHVHCPPPAWLSDSNNSADQL 384 (489)
Q Consensus 308 l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 384 (489)
++.. +||+++++.+.|.... +++... ........+...+.
T Consensus 360 lait--------------------------~Dgk~vl~v~~d~~i~-l~~~e~~~dr~lise~~~its~~---------- 402 (519)
T KOG0293|consen 360 LAIT--------------------------YDGKYVLLVTVDKKIR-LYNREARVDRGLISEEQPITSFS---------- 402 (519)
T ss_pred EEEc--------------------------CCCcEEEEEeccccee-eechhhhhhhccccccCceeEEE----------
Confidence 5544 4555544444333210 010000 00000000000111
Q ss_pred CCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCc--eEEEEeeC-CCC
Q 037120 385 HLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEG--VTACVTHP-LNN 461 (489)
Q Consensus 385 ~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~va~~p-~~~ 461 (489)
.+.++.+++..=.+..|++||+... ..+.... ||... |..-+|-- +..
T Consensus 403 -------iS~d~k~~LvnL~~qei~LWDl~e~----------~lv~kY~------------Ghkq~~fiIrSCFgg~~~~ 453 (519)
T KOG0293|consen 403 -------ISKDGKLALVNLQDQEIHLWDLEEN----------KLVRKYF------------GHKQGHFIIRSCFGGGNDK 453 (519)
T ss_pred -------EcCCCcEEEEEcccCeeEEeecchh----------hHHHHhh------------cccccceEEEeccCCCCcc
Confidence 1122778887788999999999977 6666666 77643 44445543 347
Q ss_pred eEEeccCcceeEEEecccc
Q 037120 462 TIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 462 ~i~sgs~dg~i~v~~~~~~ 480 (489)
+|||||+|+.|.+|-.+..
T Consensus 454 fiaSGSED~kvyIWhr~sg 472 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRISG 472 (519)
T ss_pred eEEecCCCceEEEEEccCC
Confidence 9999999999999977654
No 108
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=6.8e-21 Score=185.74 Aligned_cols=282 Identities=15% Similarity=0.175 Sum_probs=189.7
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
..|..|-+.|+|.|+|.+|.+++.||.|++|+.......+. ...-+... |.+++... +.|+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~-------ti~~~g~~---------v~~ia~~s---~~f~ 70 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE-------TIDISGEL---------VSSIACYS---NHFL 70 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc-------hhhccCce---------eEEEeecc---cceE
Confidence 34667899999999999999999999999999877321110 11112222 66666543 3788
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeec
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELS 252 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 252 (489)
+++.+ ++|.+|....+... ..+... +-+++.++|+-+|. +++.||.|-.|++-++.... ..+.+
T Consensus 71 ~~s~~-~tv~~y~fps~~~~--~iL~Rf----------tlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s--~~~~l 134 (933)
T KOG1274|consen 71 TGSEQ-NTVLRYKFPSGEED--TILARF----------TLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSS--QEKVL 134 (933)
T ss_pred Eeecc-ceEEEeeCCCCCcc--ceeeee----------eccceEEEEecCCc-EEEeecCceeEEEEeccccc--hheee
Confidence 88888 99999999544322 233322 23899999999999 99999999999999998876 45567
Q ss_pred cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCc---cC-CCCeeEEEeCCCCcceeeccccceeec
Q 037120 253 TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKE---VC-HLPLTSLKLASMLEKIGTLKAQSKIVS 328 (489)
Q Consensus 253 ~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~---~~-~~~v~~l~~~~~~~~i~~~~~~~~~~~ 328 (489)
.+|.++|.++.|+|.+.+|++.+.||+|++||+.++.+..++.+-.. .- -.++..++|+|++..++-.
T Consensus 135 rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~-------- 206 (933)
T KOG1274|consen 135 RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP-------- 206 (933)
T ss_pred cccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEee--------
Confidence 79999999999999999999999999999999999888666654211 10 1234556666664433210
Q ss_pred cceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcE
Q 037120 329 QEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGI 408 (489)
Q Consensus 329 ~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i 408 (489)
|-...+.++ ...+|....++...+....+ ....|+|+ |.|+++++.||.|
T Consensus 207 ---------~~d~~Vkvy-~r~~we~~f~Lr~~~~ss~~-------------------~~~~wsPn-G~YiAAs~~~g~I 256 (933)
T KOG1274|consen 207 ---------PVDNTVKVY-SRKGWELQFKLRDKLSSSKF-------------------SDLQWSPN-GKYIAASTLDGQI 256 (933)
T ss_pred ---------ccCCeEEEE-ccCCceeheeecccccccce-------------------EEEEEcCC-CcEEeeeccCCcE
Confidence 111111111 12234433333322222211 22456666 8999999999999
Q ss_pred EEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeE
Q 037120 409 HLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLL 473 (489)
Q Consensus 409 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~ 473 (489)
-|||+.+. +. . -....|.+++|+|+.+.|-.-...|..-
T Consensus 257 ~vWnv~t~----------~~-~---------------~~~~~Vc~~aw~p~~n~it~~~~~g~~~ 295 (933)
T KOG1274|consen 257 LVWNVDTH----------ER-H---------------EFKRAVCCEAWKPNANAITLITALGTLG 295 (933)
T ss_pred EEEecccc----------hh-c---------------cccceeEEEecCCCCCeeEEEeeccccc
Confidence 99999875 22 1 2345799999999988554444444433
No 109
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.89 E-value=1.7e-21 Score=164.25 Aligned_cols=197 Identities=14% Similarity=0.214 Sum_probs=152.9
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
++..|...|.|++.+.+.++|++|+.|.++++||++++++...- ..... |..+.|++++...
T Consensus 47 ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~---------k~~~~---------Vk~~~F~~~gn~~ 108 (327)
T KOG0643|consen 47 TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW---------KTNSP---------VKRVDFSFGGNLI 108 (327)
T ss_pred eecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe---------ecCCe---------eEEEeeccCCcEE
Confidence 46778888999999999999999999999999999997776631 11112 8889999998755
Q ss_pred EEEEecC---CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC
Q 037120 171 VACASTR---SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP 247 (489)
Q Consensus 171 l~s~~~d---~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 247 (489)
+++.... .+.|.++|++...+.. . .+........+...++.+-|.|-++ .|++|..||.|.+||++++..
T Consensus 109 l~~tD~~mg~~~~v~~fdi~~~~~~~--~---s~ep~~kI~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~- 181 (327)
T KOG0643|consen 109 LASTDKQMGYTCFVSVFDIRDDSSDI--D---SEEPYLKIPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKE- 181 (327)
T ss_pred EEEehhhcCcceEEEEEEccCChhhh--c---ccCceEEecCCccceeeeeecccCC-EEEEecCCCcEEEEEcccCce-
Confidence 5443211 2689999997443210 0 0011111134557899999999999 999999999999999999753
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
.++....|+..|+.++++|+..++++++.|.+-++||+++.+.++++.. . .||++.+++|....+
T Consensus 182 ~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e----~PvN~aaisP~~d~V 246 (327)
T KOG0643|consen 182 LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-E----RPVNTAAISPLLDHV 246 (327)
T ss_pred eeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-c----ccccceecccccceE
Confidence 3555568899999999999999999999999999999999998888875 3 349999999876555
No 110
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.89 E-value=9.8e-23 Score=170.03 Aligned_cols=237 Identities=16% Similarity=0.208 Sum_probs=174.9
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+|..|...|.....+.+...-|+++.|-+-+|||.-++..... ..|..- |.+++|+.+.. .
T Consensus 54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhs---------------f~hkhi---vk~~af~~ds~-~ 114 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHS---------------FEHKHI---VKAVAFSQDSN-Y 114 (334)
T ss_pred eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhh---------------hhhhhe---eeeEEecccch-h
Confidence 4777888899999999999999999999999999988444331 123333 89999999976 6
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
|++|+.+ ..++|||++.....+ ..+ .+|+..|..+-|+..++ .|++++.|++||+||.+++. .++
T Consensus 115 lltgg~e-kllrvfdln~p~App-------~E~----~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt--~v~ 179 (334)
T KOG0278|consen 115 LLTGGQE-KLLRVFDLNRPKAPP-------KEI----SGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGT--EVQ 179 (334)
T ss_pred hhccchH-HHhhhhhccCCCCCc-------hhh----cCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccCc--EEE
Confidence 6777777 999999996554442 223 88999999999998888 89999999999999999987 343
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
.+ .-...|+++.++++|++| +....+.|.+||..+...++.++... . |.+..++|+...+.
T Consensus 180 sL-~~~s~VtSlEvs~dG~il-Tia~gssV~Fwdaksf~~lKs~k~P~-n----V~SASL~P~k~~fV------------ 240 (334)
T KOG0278|consen 180 SL-EFNSPVTSLEVSQDGRIL-TIAYGSSVKFWDAKSFGLLKSYKMPC-N----VESASLHPKKEFFV------------ 240 (334)
T ss_pred EE-ecCCCCcceeeccCCCEE-EEecCceeEEeccccccceeeccCcc-c----cccccccCCCceEE------------
Confidence 33 235789999999999975 44566789999999988877766421 2 66666666554332
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEe---------eccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEe
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDV---------YNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVG 401 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 401 (489)
++.++.|....+. .+||...++|. .|+++ +...++
T Consensus 241 ---------------aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcV--rFSPd-------------------GE~yAs 284 (334)
T KOG0278|consen 241 ---------------AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCV--RFSPD-------------------GELYAS 284 (334)
T ss_pred ---------------ecCcceEEEEEeccCCceeeecccCCCCceEEE--EECCC-------------------Cceeec
Confidence 2222223222222 25555555555 44444 667788
Q ss_pred ecCCCcEEEEeccCC
Q 037120 402 SSSDHGIHLLDFFPG 416 (489)
Q Consensus 402 gs~d~~i~vwd~~~~ 416 (489)
||+||+|+||-...+
T Consensus 285 GSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 285 GSEDGTIRLWQTTPG 299 (334)
T ss_pred cCCCceEEEEEecCC
Confidence 999999999998877
No 111
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=8.7e-22 Score=177.93 Aligned_cols=219 Identities=15% Similarity=0.218 Sum_probs=168.6
Q ss_pred cCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEE
Q 037120 150 LHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIA 229 (489)
Q Consensus 150 ~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 229 (489)
.|.++ |..+...|+...++++.+.. +.|.|||.......+...- .-.....+.+|.+.-.+++|++.....+++
T Consensus 122 ~h~gE---VnRaRymPQnp~iVAt~t~~-~dv~Vfd~tk~~s~~~~~~--~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 122 NHDGE---VNRARYMPQNPNIVATKTSS-GDVYVFDYTKHPSKPKASG--ECRPDLRLKGHEKEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred cCCcc---chhhhhCCCCCcEEEecCCC-CCEEEEEeccCCCcccccc--cCCCceEEEeecccccccccccccceeEee
Confidence 36667 77799999999888888877 9999999976554432210 111233458899888899999998889999
Q ss_pred EeCCCcEEEEECCCCCc-----CceeeccCCCCceeEEEEeecCCE-EEEEeCCCeEEEEEcCC--CcccceeecCCccC
Q 037120 230 SDTHGVVNIWDRRVGVL-----PSLELSTGSHGTLNSIQLHAENQI-IFAAGKHGSIYLWDLRG--GRTSAPFHNHKEVC 301 (489)
Q Consensus 230 ~s~dg~i~iwd~~~~~~-----~~~~~~~~h~~~v~~~~~~p~~~~-l~~~~~dg~i~lwd~~~--~~~~~~~~~~~~~~ 301 (489)
++.|++|++||+..... .....+.+|+..|..++|+|.... +.+++.|+.+.|||+|+ .+......+|...
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~- 274 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE- 274 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc-
Confidence 99999999999987643 134466799999999999996655 45557799999999995 3335555566544
Q ss_pred CCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccc
Q 037120 302 HLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSA 381 (489)
Q Consensus 302 ~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (489)
|.+++|+|- +
T Consensus 275 ---vn~~~fnp~--------------------------~----------------------------------------- 284 (422)
T KOG0264|consen 275 ---VNCVAFNPF--------------------------N----------------------------------------- 284 (422)
T ss_pred ---eeEEEeCCC--------------------------C-----------------------------------------
Confidence 666655542 1
Q ss_pred cccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC
Q 037120 382 DQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN 461 (489)
Q Consensus 382 ~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~ 461 (489)
+.+|++||.|++|++||++.- .+.+..++ +|.+.|..|.|+|...
T Consensus 285 --------------~~ilAT~S~D~tV~LwDlRnL---------~~~lh~~e------------~H~dev~~V~WSPh~e 329 (422)
T KOG0264|consen 285 --------------EFILATGSADKTVALWDLRNL---------NKPLHTFE------------GHEDEVFQVEWSPHNE 329 (422)
T ss_pred --------------CceEEeccCCCcEEEeechhc---------ccCceecc------------CCCcceEEEEeCCCCC
Confidence 557889999999999999876 14556667 9999999999999874
Q ss_pred -eEEeccCcceeEEEecccc
Q 037120 462 -TIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 462 -~i~sgs~dg~i~v~~~~~~ 480 (489)
.+|++|.|+.+.||.-.+-
T Consensus 330 tvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 330 TVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred ceeEecccCCcEEEEecccc
Confidence 8999999999999965543
No 112
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=5.4e-22 Score=189.86 Aligned_cols=262 Identities=15% Similarity=0.205 Sum_probs=191.5
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
...++|..+++-.-|+.++.. .++||.+........ . ..........-+.+..|+|+....++|++++.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~--------~--~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~ 108 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEK--------C--NHRFKTKQNKFYSAADVKWGQLYSNLIATCST 108 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcc--------e--eeecccccceeeehhhcccccchhhhheeecC
Confidence 346778888888778877754 678887765222111 0 00000000111125569999777789999999
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
+ |.|-+||+...... ..+..+.+|...|+++.|++..+++|++||.||+|++||+|..+ ....+.+..
T Consensus 109 n-G~i~vWdlnk~~rn---------k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~--S~~t~~~nS 176 (839)
T KOG0269|consen 109 N-GVISVWDLNKSIRN---------KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK--SKSTFRSNS 176 (839)
T ss_pred C-CcEEEEecCccccc---------hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc--ccccccccc
Confidence 8 99999999542111 11222388999999999999999999999999999999999876 444566778
Q ss_pred CceeEEEEeec-CCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEE
Q 037120 257 GTLNSIQLHAE-NQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSI 334 (489)
Q Consensus 257 ~~v~~~~~~p~-~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~ 334 (489)
..|..+.|+|. +.+++++...|.+++||+|.... ...+..|.+. |.++.|+|+
T Consensus 177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~Gp----V~c~nwhPn--------------------- 231 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGP----VLCLNWHPN--------------------- 231 (839)
T ss_pred hhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCc----eEEEeecCC---------------------
Confidence 89999999995 45566666799999999998655 7778888866 777776663
Q ss_pred EeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEecc
Q 037120 335 DLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFF 414 (489)
Q Consensus 335 ~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~ 414 (489)
+.+|+||+.|+.|+|||+.
T Consensus 232 -------------------------------------------------------------r~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 232 -------------------------------------------------------------REWLATGGRDKMVKIWDMT 250 (839)
T ss_pred -------------------------------------------------------------CceeeecCCCccEEEEecc
Confidence 4567788999999999998
Q ss_pred CCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC-eEEeccC--cceeEEEecccccccccccc
Q 037120 415 PGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN-TIVAGTK--NSSLLVVSQKQQCTSDSMLE 488 (489)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~-~i~sgs~--dg~i~v~~~~~~~~~~~~~~ 488 (489)
+. +...... +.-..+|..|.|-|... .||+++. |-.|.||...+.=+...+++
T Consensus 251 ~~----------~~~~~~t-----------InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~ 306 (839)
T KOG0269|consen 251 DS----------RAKPKHT-----------INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL 306 (839)
T ss_pred CC----------CccceeE-----------EeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee
Confidence 76 2222111 12456899999999885 7888764 88999999999888877765
No 113
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=1.4e-21 Score=194.27 Aligned_cols=267 Identities=12% Similarity=0.184 Sum_probs=183.9
Q ss_pred cccCCCCCCceeEEEeeCCCCCEEEEEe--cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCc
Q 037120 148 HLLHIPLPQQLDAVRWNLANQDEVACAS--TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTS 225 (489)
Q Consensus 148 ~~~h~~~~~~V~~v~~~~~~~~~l~s~~--~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 225 (489)
+..|.... |.+++.+|++. .+++|+ .| +.++||+...--.+....-........+...|.+.|+++.|+|||.
T Consensus 8 wv~H~~~~--IfSIdv~pdg~-~~aTgGq~~d-~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~- 82 (942)
T KOG0973|consen 8 WVNHNEKS--IFSIDVHPDGV-KFATGGQVLD-GGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS- 82 (942)
T ss_pred ccccCCee--EEEEEecCCce-eEecCCcccc-ccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC-
Confidence 34454332 89999999996 888888 77 8888999842211100000001222334578999999999999999
Q ss_pred EEEEEeCCCcEEEEECCC----------C------CcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCc
Q 037120 226 RLIASDTHGVVNIWDRRV----------G------VLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR 289 (489)
Q Consensus 226 ~l~s~s~dg~i~iwd~~~----------~------~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~ 289 (489)
+||+|++|+.|.||+... + ...++..+.+|.+.|..++|+|++.++++++.|++|.|||.++++
T Consensus 83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~ 162 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE 162 (942)
T ss_pred eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce
Confidence 999999999999999872 0 111455677999999999999999999999999999999999999
Q ss_pred ccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCC
Q 037120 290 TSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCP 369 (489)
Q Consensus 290 ~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 369 (489)
.+..+.+|... |..+.|.|-|+++++.. +++.+..+... .|. +.+..++
T Consensus 163 ~~~vl~~H~s~----VKGvs~DP~Gky~ASqs-----------------dDrtikvwrt~-dw~-i~k~It~-------- 211 (942)
T KOG0973|consen 163 LLKVLRGHQSL----VKGVSWDPIGKYFASQS-----------------DDRTLKVWRTS-DWG-IEKSITK-------- 211 (942)
T ss_pred eeeeeeccccc----ccceEECCccCeeeeec-----------------CCceEEEEEcc-cce-eeEeecc--------
Confidence 99999999987 99999999999998632 22233322211 132 1111111
Q ss_pred CCCCcCCCCccccccCCCcceeecCCcEEEEeecCCC---cEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCccc
Q 037120 370 PPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDH---GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVP 446 (489)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (489)
.|....- .-..+.++|+|+|..+++.-+..+ ++.|.+-.+ +...-.++|
T Consensus 212 --pf~~~~~----~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t----------------------Wk~~~~LvG 263 (942)
T KOG0973|consen 212 --PFEESPL----TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT----------------------WKVDKDLVG 263 (942)
T ss_pred --chhhCCC----cceeeecccCCCcCeecchhhccCCcceeEEEecCC----------------------ceeeeeeec
Confidence 1111100 012355789999777666655443 344443322 222233559
Q ss_pred CCCceEEEEeeCCC-----C------------eEEeccCcceeEEEecc
Q 037120 447 LSEGVTACVTHPLN-----N------------TIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 447 h~~~V~~va~~p~~-----~------------~i~sgs~dg~i~v~~~~ 478 (489)
|..++.++.|+|.- . .+|+||.|++|-||...
T Consensus 264 H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~ 312 (942)
T KOG0973|consen 264 HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTA 312 (942)
T ss_pred CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecC
Confidence 99999999999841 1 78999999999999873
No 114
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=1.9e-21 Score=182.26 Aligned_cols=260 Identities=15% Similarity=0.174 Sum_probs=174.0
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|.+.|..+.|-|....|++++.|.++++||+....+. +...+.+|... |.+++|.|.++.+|
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~------------G~~~~~GH~~S---vkS~cf~~~n~~vF 160 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV------------GGRLNLGHTGS---VKSECFMPTNPAVF 160 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccceee------------cceeecccccc---cchhhhccCCCcce
Confidence 5667788999999997788999999999999999984433 33345788888 88899999999999
Q ss_pred EEEecCCCEEEEEEeccCCCCC-------------c--eeeeeceeeeeecCCcccCeeE---EEEecCCCcEEEEEeC-
Q 037120 172 ACASTRSNVVSIYDIGYISDEP-------------V--EVLKTRRSVTVVGSDVQKGLSD---LAFSAVNTSRLIASDT- 232 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~-------------~--~~~~~~~~~~~~~~~h~~~v~~---~~~~~~~~~~l~s~s~- 232 (489)
++|+.| |.|.|||++...... . .-.++...-+.....|...|.+ +.+..|.. .|++++.
T Consensus 161 ~tGgRD-g~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~ 238 (720)
T KOG0321|consen 161 CTGGRD-GEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAA 238 (720)
T ss_pred eeccCC-CcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-eeeeccCC
Confidence 999999 999999998543110 0 0111111111122345555555 55555666 8999886
Q ss_pred CCcEEEEECCCCCcC----ce--eeccCC---CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc--cceeecCCccC
Q 037120 233 HGVVNIWDRRVGVLP----SL--ELSTGS---HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVC 301 (489)
Q Consensus 233 dg~i~iwd~~~~~~~----~~--~~~~~h---~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~ 301 (489)
|+.|+|||++..... .. ..+..| .-.+.++..+..|.+|++.+.|+.|++|++++... +..+.++...
T Consensus 239 D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~- 317 (720)
T KOG0321|consen 239 DSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNS- 317 (720)
T ss_pred CcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccc-
Confidence 999999999976422 11 111122 34678899999999999999999999999997543 3333333211
Q ss_pred CCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCC---ce-----EEEEeeccceeeecCCCCCC
Q 037120 302 HLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDG---WS-----GVLDVYNSRVSHVHCPPPAW 373 (489)
Q Consensus 302 ~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~---w~-----~~~~~~~~~~~~~~~~~~~~ 373 (489)
.+ + ..-..+|++.+++..+.+.. |. .-...+.||...++++
T Consensus 318 -----sf-------~---------------vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V---- 366 (720)
T KOG0321|consen 318 -----SF-------Y---------------VKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTV---- 366 (720)
T ss_pred -----ee-------e---------------eeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEE----
Confidence 10 0 01135677777777766654 31 1123445665555554
Q ss_pred cCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCC
Q 037120 374 LSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPG 416 (489)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~ 416 (489)
+|.|..-.-++++++|..++||++..+
T Consensus 367 ----------------~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 367 ----------------RWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ----------------eeccccCCCceeeccCcceEEEeccCc
Confidence 344443445666799999999999766
No 115
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.3e-22 Score=185.86 Aligned_cols=194 Identities=17% Similarity=0.244 Sum_probs=152.4
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCc--ccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESL--YYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~--~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
..|..-|+.++...+|+.|++++.|-+|++|+.... .|.. ++..|..+ |.|++.-.....+
T Consensus 70 e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s--------tir~H~DY---------Vkcla~~ak~~~l 132 (735)
T KOG0308|consen 70 EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS--------TIRTHKDY---------VKCLAYIAKNNEL 132 (735)
T ss_pred hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHh--------hhhcccch---------heeeeecccCcee
Confidence 334444888888889999999999999999999875 2333 34445555 9999994444469
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeec-CCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVG-SDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
+++|+-| +.|.+||++.+........ .......+ .|+...|++++.++.+. .|++|+..+.+++||.++.+ .+
T Consensus 133 vaSgGLD-~~IflWDin~~~~~l~~s~--n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt~~--ki 206 (735)
T KOG0308|consen 133 VASGGLD-RKIFLWDINTGTATLVASF--NNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRTCK--KI 206 (735)
T ss_pred EEecCCC-ccEEEEEccCcchhhhhhc--cccccccCCCCCccceeeeecCCcce-EEEecCcccceEEecccccc--ce
Confidence 9999999 9999999975533111111 11111122 38999999999999998 99999999999999999976 34
Q ss_pred eeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCC
Q 037120 250 ELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 313 (489)
..+.+|+.-|.++..++||..++++++||+|++||+...+++.++..|.+. |.++.-+|+
T Consensus 207 mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~----VWaL~~~~s 266 (735)
T KOG0308|consen 207 MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG----VWALQSSPS 266 (735)
T ss_pred eeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc----eEEEeeCCC
Confidence 456699999999999999999999999999999999999999999988877 777654443
No 116
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.6e-20 Score=177.50 Aligned_cols=252 Identities=15% Similarity=0.209 Sum_probs=186.8
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
.+|.|+||+.+.+.||.+-.||.|.+|++...-+... ..|-.+...|.+++|++.+ .|++.+.
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~---------------vi~g~~drsIE~L~W~e~~--RLFS~g~ 88 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP---------------VIHGPEDRSIESLAWAEGG--RLFSSGL 88 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE---------------EEecCCCCceeeEEEccCC--eEEeecC
Confidence 5699999999999999999999999999988433321 2233333348899999665 4555555
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
+ |+|.-||+- .+++.... ....+.|++++.+|.+. .++.|+.||.+..++...++......+...+
T Consensus 89 s-g~i~EwDl~--------~lk~~~~~----d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~ 154 (691)
T KOG2048|consen 89 S-GSITEWDLH--------TLKQKYNI----DSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQK 154 (691)
T ss_pred C-ceEEEEecc--------cCceeEEe----cCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeeccccc
Confidence 5 999999993 33323322 44557999999999998 8999999998888888776533333343456
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEe
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDL 336 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 336 (489)
+.|.+++|+|++..+++|+.||.|++||..++..++........ ..+....-|+++.+
T Consensus 155 sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~----------------------l~k~~~~iVWSv~~ 212 (691)
T KOG2048|consen 155 SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDR----------------------LSKREPTIVWSVLF 212 (691)
T ss_pred ceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccc----------------------cccCCceEEEEEEE
Confidence 89999999999999999999999999999988765422111000 00000001122111
Q ss_pred CCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCC
Q 037120 337 DPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPG 416 (489)
Q Consensus 337 ~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~ 416 (489)
.. ...+++|..-|+|.+||...+
T Consensus 213 -------------------------------------Lr--------------------d~tI~sgDS~G~V~FWd~~~g 235 (691)
T KOG2048|consen 213 -------------------------------------LR--------------------DSTIASGDSAGTVTFWDSIFG 235 (691)
T ss_pred -------------------------------------ee--------------------cCcEEEecCCceEEEEcccCc
Confidence 00 446888999999999999999
Q ss_pred CCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 417 SSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
..++... .|...|.+++..++++++.++|.|+.|.-|..+.+
T Consensus 236 ----------TLiqS~~------------~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 236 ----------TLIQSHS------------CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred ----------chhhhhh------------hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 8888888 89999999999999999999999999999987765
No 117
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.7e-21 Score=173.20 Aligned_cols=248 Identities=17% Similarity=0.207 Sum_probs=176.3
Q ss_pred CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcc---------cccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 108 GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKE---------DQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 108 g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~---------~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
|+|+|.|+.|..|.|||+.-...+.. -...|... ......+|+.. |.+++|+-.-.++|++|+.|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P--~~~LGs~~sk~~~k~~k~~~~~~gHTda---vl~Ls~n~~~~nVLaSgsaD- 265 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLP--CVTLGSKASKKKKKKGKRSNSASGHTDA---VLALSWNRNFRNVLASGSAD- 265 (463)
T ss_pred cceEEEeccCceeEEecccccccccc--ceeechhhhhhhhhhcccccccccchHH---HHHHHhccccceeEEecCCC-
Confidence 78999999999999999875221110 00001000 11112457777 78899999988999999999
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCc
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGT 258 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~ 258 (489)
.+|++||+..+... .. +..|.+.|.+++|+|..+..|++|+.|++|.+.|.|.....-. .-.-.+.
T Consensus 266 ~TV~lWD~~~g~p~--------~s----~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~--~wk~~g~ 331 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPK--------SS----ITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK--EWKFDGE 331 (463)
T ss_pred ceEEEEEcCCCCcc--------ee----hhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc--eEEeccc
Confidence 99999999554322 22 2568899999999999998999999999999999996432211 1123688
Q ss_pred eeEEEEeecCCEEEEEe-CCCeEEEEEcCCC-cccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEe
Q 037120 259 LNSIQLHAENQIIFAAG-KHGSIYLWDLRGG-RTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDL 336 (489)
Q Consensus 259 v~~~~~~p~~~~l~~~~-~dg~i~lwd~~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 336 (489)
|-.++|+|.....+.++ .||+|+-+|+|+. +++.+++.|.+. |.+|+++.
T Consensus 332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~----ISgl~~n~------------------------ 383 (463)
T KOG0270|consen 332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDE----ISGLSVNI------------------------ 383 (463)
T ss_pred eEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCC----cceEEecC------------------------
Confidence 99999999887665555 5999999999985 668888888766 66665332
Q ss_pred CCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCC
Q 037120 337 DPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPG 416 (489)
Q Consensus 337 ~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~ 416 (489)
.- ..+++++|.|+.+++|++...
T Consensus 384 --~~-------------------------------------------------------p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 384 --QT-------------------------------------------------------PGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred --CC-------------------------------------------------------CcceeeccccceEEEEeecCC
Confidence 10 446778999999999999765
Q ss_pred CCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC-eEEeccCcceeEEEecccc
Q 037120 417 SSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN-TIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~-~i~sgs~dg~i~v~~~~~~ 480 (489)
.+ ..+..-. ---+...|.++.|+-. .+|.||..+.++||.....
T Consensus 407 ~~--------~~v~~~~------------~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 407 SP--------KSVKEHS------------FKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred CC--------ccccccc------------ccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 11 1111111 0012356778888775 7899999999999975543
No 118
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.88 E-value=1.1e-20 Score=168.31 Aligned_cols=339 Identities=14% Similarity=0.093 Sum_probs=206.3
Q ss_pred CCCceeEEEECCCCc-EEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 95 GKPGISALDFDCKGI-YLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~-~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
.+..|..+.|.++.. .||+|+.|..|+||-++........ +..+-+..+..|... |+++.|+|++. ++++
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-----~~V~y~s~Ls~H~~a---VN~vRf~p~ge-lLAS 82 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-----MKVEYLSSLSRHTRA---VNVVRFSPDGE-LLAS 82 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-----eeEEEeecccCCcce---eEEEEEcCCcC-eeee
Confidence 345699999998876 9999999999999998874433311 134444555667777 99999999986 9999
Q ss_pred EecCCCEEEEEEeccCC---CCC-ceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 174 ASTRSNVVSIYDIGYIS---DEP-VEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~---~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
|+++ |.|.+|...... ... ....++.......+.+|...|..++|+|++. .+++++.|+.+++||++.+. ..
T Consensus 83 g~D~-g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~--l~ 158 (434)
T KOG1009|consen 83 GGDG-GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQ--LL 158 (434)
T ss_pred cCCC-ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccce--eE
Confidence 9977 999999885210 000 0111222333344588999999999999999 99999999999999999998 66
Q ss_pred eeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee--------cC-----------CccCCCCeeEEEe
Q 037120 250 ELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH--------NH-----------KEVCHLPLTSLKL 310 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~--------~~-----------~~~~~~~v~~l~~ 310 (489)
.....|...+.-++|.|-++++++-+.|...+.+++..-+.++... .+ .+.-..-...++|
T Consensus 159 ~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 159 AILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred eeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 6778999999999999999999999999877777765533321111 00 0000011234455
Q ss_pred CCCCcceeeccccceeeccceeEEEeCCCCCe--EEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCc
Q 037120 311 ASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSY--QLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRK 388 (489)
Q Consensus 311 ~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~--~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (489)
+|+|..+.+-....+..........+.++++. .-++.+..--...+.+....+..-.++ .... .
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp---~~~~-----------~ 304 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRP---LSSE-----------K 304 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecc---cccc-----------c
Confidence 55555443322111111111111111111110 000000000000000000000000000 0000 0
Q ss_pred cee-ecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEecc
Q 037120 389 PSW-LSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGT 467 (489)
Q Consensus 389 ~~~-~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs 467 (489)
..+ +|-+-.++++ ..+.|+|||..+. +.+.... .-|-..|++++|++++..++..|
T Consensus 305 ~~~~lpyrlvfaiA--t~~svyvydtq~~----------~P~~~v~-----------nihy~~iTDiaws~dg~~l~vSS 361 (434)
T KOG1009|consen 305 FLFVLPYRLVFAIA--TKNSVYVYDTQTL----------EPLAVVD-----------NIHYSAITDIAWSDDGSVLLVSS 361 (434)
T ss_pred cccccccceEEEEe--ecceEEEeccccc----------cceEEEe-----------eeeeeeecceeecCCCcEEEEec
Confidence 011 1122334443 5678999998876 4443332 04778999999999999999999
Q ss_pred CcceeEEEeccccccc
Q 037120 468 KNSSLLVVSQKQQCTS 483 (489)
Q Consensus 468 ~dg~i~v~~~~~~~~~ 483 (489)
.||-.-++..++..+.
T Consensus 362 ~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 362 TDGFCSLVTFEPWELG 377 (434)
T ss_pred cCCceEEEEEcchhcc
Confidence 9999999888877665
No 119
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=1.7e-20 Score=169.45 Aligned_cols=305 Identities=20% Similarity=0.231 Sum_probs=190.4
Q ss_pred ccCCCceeEEEECCCC--cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 93 SFGKPGISALDFDCKG--IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g--~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
..+...|++++|+|.. +++|+|..-|.|-+||+.+.+. .......+..|... |.++.|+|.+...
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~----------d~d~v~~f~~hs~~---Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK----------DKDGVYLFTPHSGP---VSGLKFSPANTSQ 249 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC----------ccCceEEeccCCcc---ccceEecCCChhh
Confidence 3344569999999975 5889999999999999964111 12222334556666 8899999999999
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
+++.+.| |+|++-|+.....+ .++.. ..-...+.++.|+.... .++.+..=|...+||+|+++.. ..
T Consensus 250 i~ssSyD-GtiR~~D~~~~i~e--~v~s~--------~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~-~~ 316 (498)
T KOG4328|consen 250 IYSSSYD-GTIRLQDFEGNISE--EVLSL--------DTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSE-YE 316 (498)
T ss_pred eeeeccC-ceeeeeeecchhhH--HHhhc--------CccceeeeeccccCCCc-cEEEeecccceEEEEeecCCcc-ch
Confidence 9999999 99999999543322 11111 11234677888888888 6777777779999999998654 33
Q ss_pred eccCCCCceeEEEEeecCCEE-EEEeCCCeEEEEEcCCCcccce--e--ecCCccCCCCeeEEEeCCCCcceeeccccce
Q 037120 251 LSTGSHGTLNSIQLHAENQII-FAAGKHGSIYLWDLRGGRTSAP--F--HNHKEVCHLPLTSLKLASMLEKIGTLKAQSK 325 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l-~~~~~dg~i~lwd~~~~~~~~~--~--~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~ 325 (489)
...-|+..|.+++++|-.+++ +++|.|++.+|||+|....... + ..|... |.+..|+|.+
T Consensus 317 ~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrrs----V~sAyFSPs~----------- 381 (498)
T KOG4328|consen 317 NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRS----VNSAYFSPSG----------- 381 (498)
T ss_pred hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccce----eeeeEEcCCC-----------
Confidence 455778899999999987765 5556699999999998543221 1 133333 5555555544
Q ss_pred eeccceeEEEeCCCCCeEEEEEecCCceEEEEeecc-ceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecC
Q 037120 326 IVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNS-RVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSS 404 (489)
Q Consensus 326 ~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~ 404 (489)
..+++.+.|+. +.+++. +.....++ ..-...++....-+..-+..|-|+ ..+++.|-.
T Consensus 382 ---------------gtl~TT~~D~~----IRv~dss~~sa~~~p-~~~I~Hn~~t~RwlT~fKA~W~P~-~~li~vg~~ 440 (498)
T KOG4328|consen 382 ---------------GTLLTTCQDNE----IRVFDSSCISAKDEP-LGTIPHNNRTGRWLTPFKAAWDPD-YNLIVVGRY 440 (498)
T ss_pred ---------------CceEeeccCCc----eEEeecccccccCCc-cceeeccCcccccccchhheeCCC-ccEEEEecc
Confidence 44444444432 111111 00000000 000000010001112233456664 556666677
Q ss_pred CCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCce-EEEEeeCCCCe-EEeccCcceeEEEecccc
Q 037120 405 DHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGV-TACVTHPLNNT-IVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 405 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~va~~p~~~~-i~sgs~dg~i~v~~~~~~ 480 (489)
-..|-|+|-..+ +.+..+.. +....| .-.+|||.+.. +|.|+..|.|.||+.|+.
T Consensus 441 ~r~IDv~~~~~~----------q~v~el~~-----------P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~~ 497 (498)
T KOG4328|consen 441 PRPIDVFDGNGG----------QMVCELHD-----------PESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKKS 497 (498)
T ss_pred CcceeEEcCCCC----------EEeeeccC-----------ccccccccceeecccccceeccCCccceEEEEecCCC
Confidence 778999998877 54444320 222233 33589999994 455567999999999875
No 120
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=8.3e-20 Score=166.90 Aligned_cols=305 Identities=14% Similarity=0.182 Sum_probs=209.2
Q ss_pred cCCCceeEEEECCC--CcEEEEEe--cCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCC
Q 037120 94 FGKPGISALDFDCK--GIYLVSAT--RSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 94 ~~~~~V~~~~fs~~--g~~la~g~--~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~ 169 (489)
.-+.+|.|++|++. |.+|+... .+..+.|||++...... ......+. |....|+|...+
T Consensus 152 ~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~--------~vk~sne~---------v~~a~FHPtd~n 214 (626)
T KOG2106|consen 152 FFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLG--------PVKTSNEV---------VFLATFHPTDPN 214 (626)
T ss_pred cccccceeeeecccCCCceEEEecCCCccccchhhchhhhccC--------cceeccce---------EEEEEeccCCCc
Confidence 34578999999975 67776654 36778999998844332 12222223 888999999999
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
++++.+ .+.+..|+.+.+.- .+....+ . ..-..-|.+++|.++|. ++||..+|.|.||+.++.. ..
T Consensus 215 liit~G--k~H~~Fw~~~~~~l-----~k~~~~f-e--k~ekk~Vl~v~F~engd--viTgDS~G~i~Iw~~~~~~--~~ 280 (626)
T KOG2106|consen 215 LIITCG--KGHLYFWTLRGGSL-----VKRQGIF-E--KREKKFVLCVTFLENGD--VITGDSGGNILIWSKGTNR--IS 280 (626)
T ss_pred EEEEeC--CceEEEEEccCCce-----EEEeecc-c--cccceEEEEEEEcCCCC--EEeecCCceEEEEeCCCce--EE
Confidence 999999 68999999854321 1111111 0 11226799999999998 8999999999999997754 33
Q ss_pred eeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceee---------c
Q 037120 250 ELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGT---------L 320 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~---------~ 320 (489)
+....|.+.|.+++.-.+|.+ ++|+.|..|.+|| ..-+.++..+-.+.. .+|+.++=...+-++++ +
T Consensus 281 k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd-~~y~k~r~~elPe~~--G~iRtv~e~~~di~vGTtrN~iL~Gt~ 356 (626)
T KOG2106|consen 281 KQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWD-DNYRKLRETELPEQF--GPIRTVAEGKGDILVGTTRNFILQGTL 356 (626)
T ss_pred eEeeecCCceEEEEEecCccE-eecCccceEEecc-ccccccccccCchhc--CCeeEEecCCCcEEEeeccceEEEeee
Confidence 344499999999999999986 5599999999999 444444444433322 44777765444433322 1
Q ss_pred ----cccceeeccceeEEEeCCCCCeEEEEEecCC---ceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeec
Q 037120 321 ----KAQSKIVSQEIHSIDLDPSCSYQLAFHLDDG---WSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLS 393 (489)
Q Consensus 321 ----~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~---w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (489)
.....++....+.++..|+...+++++.+.. |. .+.. .|...-. -+.....|.|
T Consensus 357 ~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-------~~k~-------~wt~~~~-----d~~~~~~fhp 417 (626)
T KOG2106|consen 357 ENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-------DHKL-------EWTKIIE-----DPAECADFHP 417 (626)
T ss_pred cCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-------CCce-------eEEEEec-----CceeEeeccC
Confidence 1223345668889999999999888887765 42 1110 0000000 0012234455
Q ss_pred CCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeE
Q 037120 394 TNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLL 473 (489)
Q Consensus 394 ~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~ 473 (489)
.| .++.|+..|...|.|..+. ..+..-. . .+++++++|+|+|.+||.|+.|+.|.
T Consensus 418 sg--~va~Gt~~G~w~V~d~e~~----------~lv~~~~------------d-~~~ls~v~ysp~G~~lAvgs~d~~iy 472 (626)
T KOG2106|consen 418 SG--VVAVGTATGRWFVLDTETQ----------DLVTIHT------------D-NEQLSVVRYSPDGAFLAVGSHDNHIY 472 (626)
T ss_pred cc--eEEEeeccceEEEEecccc----------eeEEEEe------------c-CCceEEEEEcCCCCEEEEecCCCeEE
Confidence 55 7788899999999999887 5554433 3 67899999999999999999999999
Q ss_pred EEec
Q 037120 474 VVSQ 477 (489)
Q Consensus 474 v~~~ 477 (489)
||-.
T Consensus 473 iy~V 476 (626)
T KOG2106|consen 473 IYRV 476 (626)
T ss_pred EEEE
Confidence 9743
No 121
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.4e-20 Score=166.97 Aligned_cols=299 Identities=14% Similarity=0.228 Sum_probs=199.3
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
.+.+.+|+++.|+|...+|++++.||+++||.++...... .. ..| -...+|.+.+|.|+|...++
T Consensus 210 ~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~-------------lq-S~~-l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 210 HPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK-------------LQ-SIH-LEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred CcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChh-------------he-eee-eccCccceeeecCCCceEEE
Confidence 4556779999999999999999999999999988721111 00 111 12334889999999987788
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCc-ccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDV-QKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
+++.. ..++.||+....... + .. +.++ ...+.....+++++ +|+..+..|.|.+....+++ .+..
T Consensus 275 ~s~rr-ky~ysyDle~ak~~k---~--~~-----~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~e--li~s 340 (514)
T KOG2055|consen 275 TSGRR-KYLYSYDLETAKVTK---L--KP-----PYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKE--LITS 340 (514)
T ss_pred ecccc-eEEEEeecccccccc---c--cC-----CCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhh--hhhe
Confidence 88876 899999994432111 1 11 1222 24567778899999 99999999999999988876 3322
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
+ .-++.|..++|+.+++.|++.+.+|.|.+||++...+++.+.... . |..
T Consensus 341 ~-KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G-~----v~g------------------------ 390 (514)
T KOG2055|consen 341 F-KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG-S----VHG------------------------ 390 (514)
T ss_pred e-eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC-c----cce------------------------
Confidence 2 236789999999999999999999999999999998888877522 2 210
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCC-CCcCCCCccccccCCCcceeecCCcEEEEee-cCCCcEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPP-AWLSDSNNSADQLHLRKPSWLSTNSIYAVGS-SSDHGIH 409 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-s~d~~i~ 409 (489)
++++.++++.++++++.. +++++|++........|. ....+ ...-.+..+.|.++...++++. ..++.+|
T Consensus 391 ts~~~S~ng~ylA~GS~~----GiVNIYd~~s~~~s~~PkPik~~d----NLtt~Itsl~Fn~d~qiLAiaS~~~knalr 462 (514)
T KOG2055|consen 391 TSLCISLNGSYLATGSDS----GIVNIYDGNSCFASTNPKPIKTVD----NLTTAITSLQFNHDAQILAIASRVKKNALR 462 (514)
T ss_pred eeeeecCCCceEEeccCc----ceEEEeccchhhccCCCCchhhhh----hhheeeeeeeeCcchhhhhhhhhccccceE
Confidence 344455566655544322 255666543221111110 00000 0011233456666655555443 3456899
Q ss_pred EEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 410 LLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 410 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
+-.+.+. ... .+++..+..++| |+|++|+|.+.++|.|.++|.+.||--
T Consensus 463 LVHvPS~----------TVF------sNfP~~n~~vg~---vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 463 LVHVPSC----------TVF------SNFPTSNTKVGH---VTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred EEeccce----------eee------ccCCCCCCcccc---eEEEEecCCCceEEeecCCCceeeEee
Confidence 9888776 222 233444444444 999999999999999999999999954
No 122
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=6.5e-20 Score=158.80 Aligned_cols=241 Identities=12% Similarity=0.170 Sum_probs=161.6
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC--CCc
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT--HGV 235 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~--dg~ 235 (489)
|.++.|+++|. .+++++.| .+++|||...+... ..+ ..+.-.+..++|..... .++.++. |.+
T Consensus 17 i~sl~fs~~G~-~litss~d-Dsl~LYd~~~g~~~--~ti----------~skkyG~~~~~Fth~~~-~~i~sStk~d~t 81 (311)
T KOG1446|consen 17 INSLDFSDDGL-LLITSSED-DSLRLYDSLSGKQV--KTI----------NSKKYGVDLACFTHHSN-TVIHSSTKEDDT 81 (311)
T ss_pred eeEEEecCCCC-EEEEecCC-CeEEEEEcCCCcee--eEe----------ecccccccEEEEecCCc-eEEEccCCCCCc
Confidence 99999999997 44455555 79999999544211 222 22344788888887776 6666664 899
Q ss_pred EEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCc
Q 037120 236 VNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 236 i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
|+..++.+.+ .++.+.+|...|++++.+|-+..+++++.|++|++||+|..++...+.... -...+|.|+|-
T Consensus 82 IryLsl~dNk--ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~------~pi~AfDp~GL 153 (311)
T KOG1446|consen 82 IRYLSLHDNK--YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG------RPIAAFDPEGL 153 (311)
T ss_pred eEEEEeecCc--eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC------CcceeECCCCc
Confidence 9999999887 899999999999999999999999999999999999999877755554322 23455666665
Q ss_pred ceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCC
Q 037120 316 KIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTN 395 (489)
Q Consensus 316 ~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (489)
.++. ....+ -.++.++...... +...|.... .+......+.|+|+|
T Consensus 154 ifA~--------------------------~~~~~-~IkLyD~Rs~dkg----PF~tf~i~~---~~~~ew~~l~FS~dG 199 (311)
T KOG1446|consen 154 IFAL--------------------------ANGSE-LIKLYDLRSFDKG----PFTTFSITD---NDEAEWTDLEFSPDG 199 (311)
T ss_pred EEEE--------------------------ecCCC-eEEEEEecccCCC----CceeEccCC---CCccceeeeEEcCCC
Confidence 5543 21111 1112221110000 000111110 001122335667776
Q ss_pred cEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCc---eEEEEeeCCCCeEEeccCccee
Q 037120 396 SIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEG---VTACVTHPLNNTIVAGTKNSSL 472 (489)
Q Consensus 396 ~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---V~~va~~p~~~~i~sgs~dg~i 472 (489)
..+|++ ...+.+++.|.-++ ..+..+. ++... -....|.|++++|++|+.||+|
T Consensus 200 K~iLls-T~~s~~~~lDAf~G----------~~~~tfs------------~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i 256 (311)
T KOG1446|consen 200 KSILLS-TNASFIYLLDAFDG----------TVKSTFS------------GYPNAGNLPLSATFTPDSKFVLSGSDDGTI 256 (311)
T ss_pred CEEEEE-eCCCcEEEEEccCC----------cEeeeEe------------eccCCCCcceeEEECCCCcEEEEecCCCcE
Confidence 665555 67889999999988 5555555 22221 2688999999999999999999
Q ss_pred EEEecc
Q 037120 473 LVVSQK 478 (489)
Q Consensus 473 ~v~~~~ 478 (489)
.+|--+
T Consensus 257 ~vw~~~ 262 (311)
T KOG1446|consen 257 HVWNLE 262 (311)
T ss_pred EEEEcC
Confidence 999653
No 123
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.8e-22 Score=191.61 Aligned_cols=190 Identities=17% Similarity=0.209 Sum_probs=162.5
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|+.+|.|+.|+++..+|++|+.+|+|++||++....+. .+.+|... +.+|.|+|.+. ++
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr--------------tLtgh~~~---~~sv~f~P~~~-~~ 127 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR--------------TLTGHLLN---ITSVDFHPYGE-FF 127 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhh--------------hhhccccC---cceeeeccceE-Ee
Confidence 56688889999999999999999999999999999854444 23677777 88899999986 66
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++|+.| +.+++||++... +.+.+.+|...|..++|+|+|. +++.+++|.+++|||+..++ ....
T Consensus 128 a~gStd-td~~iwD~Rk~G------------c~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~agk--~~~e 191 (825)
T KOG0267|consen 128 ASGSTD-TDLKIWDIRKKG------------CSHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAGK--LSKE 191 (825)
T ss_pred cccccc-ccceehhhhccC------------ceeeecCCcceeEEEeecCCCc-eeeccCCcceeeeecccccc--cccc
Confidence 888888 999999994321 2223377999999999999999 99999999999999999988 7778
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceee
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
+..|++.+.++.|+|..-++..||.|++|++||+++...+...+..... |.+++|+|++..+.+
T Consensus 192 f~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~----v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 192 FKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDG----VRSLAFNPDGKIVLS 255 (825)
T ss_pred cccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCC----ceeeeecCCceeeec
Confidence 8899999999999999999999999999999999998776666655444 999999999987743
No 124
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.6e-20 Score=174.81 Aligned_cols=304 Identities=14% Similarity=0.104 Sum_probs=190.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
|..|...|+||..+|.|.+||+|+.||+|+||.+.++.|+..- .+.. . |.||+|+|.+...+
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~------~~d~---------~---I~~vaw~P~~~~~v 457 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV------QFDS---------E---IRSVAWNPLSDLCV 457 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE------eecc---------e---eEEEEecCCCCcee
Confidence 5667778999999999999999999999999999998887731 1111 1 99999999987666
Q ss_pred EEEecCCCEEEEEEeccCCCC----Cceeee---------------------eceeeeeecCCcccCeeEEEEecCCCcE
Q 037120 172 ACASTRSNVVSIYDIGYISDE----PVEVLK---------------------TRRSVTVVGSDVQKGLSDLAFSAVNTSR 226 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~----~~~~~~---------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 226 (489)
++.+.. ..+.|-+...+... ....+. ....-+.....|...|+.+.|+..|. +
T Consensus 458 LAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-Y 535 (733)
T KOG0650|consen 458 LAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD-Y 535 (733)
T ss_pred EEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc-e
Confidence 666655 55666655332000 000000 00000111245888999999999999 8
Q ss_pred EEEEeCC---CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCC
Q 037120 227 LIASDTH---GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHL 303 (489)
Q Consensus 227 l~s~s~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~ 303 (489)
|++...+ ..|.|.++......+ -+.-..+.|.++.|+|...++++++. ..|+|||+.....++.+......
T Consensus 536 latV~~~~~~~~VliHQLSK~~sQ~--PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kw--- 609 (733)
T KOG0650|consen 536 LATVMPDSGNKSVLIHQLSKRKSQS--PFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKW--- 609 (733)
T ss_pred EEEeccCCCcceEEEEecccccccC--chhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCee---
Confidence 8887743 568899998765331 12233577999999999999988765 58999999987766666654545
Q ss_pred CeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccc
Q 037120 304 PLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQ 383 (489)
Q Consensus 304 ~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (489)
|.+++.+|.|..+.-. ...+.++.+.++-. ++.+.....|...+
T Consensus 610 -iS~msihp~GDnli~g-----------------s~d~k~~WfDldls-skPyk~lr~H~~av----------------- 653 (733)
T KOG0650|consen 610 -ISSMSIHPNGDNLILG-----------------SYDKKMCWFDLDLS-SKPYKTLRLHEKAV----------------- 653 (733)
T ss_pred -eeeeeecCCCCeEEEe-----------------cCCCeeEEEEcccC-cchhHHhhhhhhhh-----------------
Confidence 6666666655433210 01112222222211 01122222222111
Q ss_pred cCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccC--cccchhhHhhhhcccCCcccCCCc----eEEEEee
Q 037120 384 LHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYN--EDIESLSERTKLKKENRFVPLSEG----VTACVTH 457 (489)
Q Consensus 384 ~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~----V~~va~~ 457 (489)
+.+++++. -.++++|+.|+++.|+.-.-- -|.. .++..++ ++.+|... |..+.||
T Consensus 654 ---r~Va~H~r-yPLfas~sdDgtv~Vfhg~VY------~Dl~qnpliVPlK---------~L~gH~~~~~~gVLd~~wH 714 (733)
T KOG0650|consen 654 ---RSVAFHKR-YPLFASGSDDGTVIVFHGMVY------NDLLQNPLIVPLK---------RLRGHEKTNDLGVLDTIWH 714 (733)
T ss_pred ---hhhhhccc-cceeeeecCCCcEEEEeeeee------hhhhcCCceEeee---------eccCceeecccceEeeccc
Confidence 22233322 446778899999999853211 0000 1111111 11267554 9999999
Q ss_pred CCCCeEEeccCcceeEEEe
Q 037120 458 PLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 458 p~~~~i~sgs~dg~i~v~~ 476 (489)
|..+++.|+|.||+|+||.
T Consensus 715 P~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 715 PRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred CCCceEEecCCCceEEeeC
Confidence 9999999999999999984
No 125
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.86 E-value=3.7e-20 Score=160.31 Aligned_cols=292 Identities=15% Similarity=0.194 Sum_probs=188.6
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEee-------CCCCCEE
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWN-------LANQDEV 171 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~-------~~~~~~l 171 (489)
...+.|+|||..|++-+.|..+++|++...-...... +..........|...+.-|..-+|- |+ ..++
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~----~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~-t~l~ 126 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKAD----GPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS-TNLF 126 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCC----CccccccceeEEeccCCEEEEEEeeeccccCCCc-ccee
Confidence 5678999999999999999999999986532222100 0111111122344444447778884 44 3577
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCccc---CeeEEEEecCCCcEEEEEeCCCcEEEEEC-CCCCcC
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQK---GLSDLAFSAVNTSRLIASDTHGVVNIWDR-RVGVLP 247 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~s~s~dg~i~iwd~-~~~~~~ 247 (489)
++.+.+ .-|++||.-.++.+ .. .+. ..|.+ ...+++|+|||. .|++|. ...|+++|+ |.+...
T Consensus 127 a~ssr~-~PIh~wdaftG~lr--aS---y~~-----ydh~de~taAhsL~Fs~DGe-qlfaGy-krcirvFdt~RpGr~c 193 (406)
T KOG2919|consen 127 AVSSRD-QPIHLWDAFTGKLR--AS---YRA-----YDHQDEYTAAHSLQFSPDGE-QLFAGY-KRCIRVFDTSRPGRDC 193 (406)
T ss_pred eecccc-Cceeeeeccccccc--cc---hhh-----hhhHHhhhhheeEEecCCCC-eEeecc-cceEEEeeccCCCCCC
Confidence 777777 99999999544222 11 111 22333 446899999999 777555 789999999 555332
Q ss_pred ceeecc-----CCCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeecc
Q 037120 248 SLELST-----GSHGTLNSIQLHAENQ-IIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLK 321 (489)
Q Consensus 248 ~~~~~~-----~h~~~v~~~~~~p~~~-~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~ 321 (489)
...... +..+-|.|++|+|... .++.|+....+-||.-..+..+..+.+|.+. |+.|+|+++|..+.+-.
T Consensus 194 ~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gG----vThL~~~edGn~lfsGa 269 (406)
T KOG2919|consen 194 PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGG----VTHLQWCEDGNKLFSGA 269 (406)
T ss_pred cchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCC----eeeEEeccCcCeecccc
Confidence 221111 3367789999999776 6777777888888888888889999999988 99999999998775422
Q ss_pred -ccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEE
Q 037120 322 -AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAV 400 (489)
Q Consensus 322 -~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 400 (489)
...++. ++.|..+.+--+-+-.+.+++. .+ + .|..++. +.+|+
T Consensus 270 Rk~dkIl---~WDiR~~~~pv~~L~rhv~~TN-----------QR---I--~FDld~~-----------------~~~La 313 (406)
T KOG2919|consen 270 RKDDKIL---CWDIRYSRDPVYALERHVGDTN-----------QR---I--LFDLDPK-----------------GEILA 313 (406)
T ss_pred cCCCeEE---EEeehhccchhhhhhhhccCcc-----------ce---E--EEecCCC-----------------Cceee
Confidence 111111 1112111111111111111100 01 1 2222222 88999
Q ss_pred eecCCCcEEEEeccC-CCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcc
Q 037120 401 GSSSDHGIHLLDFFP-GSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNS 470 (489)
Q Consensus 401 sgs~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg 470 (489)
+|+.||.|++||+.. + +.+..+. .|.+.|+.|++||.-+++|+++...
T Consensus 314 sG~tdG~V~vwdlk~~g----------n~~sv~~------------~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 314 SGDTDGSVRVWDLKDLG----------NEVSVTG------------NYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred ccCCCccEEEEecCCCC----------Ccccccc------------cccccccceecCcccceeeeccCce
Confidence 999999999999987 4 4455555 8999999999999999999887643
No 126
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.86 E-value=8.4e-20 Score=176.32 Aligned_cols=333 Identities=13% Similarity=0.113 Sum_probs=224.5
Q ss_pred cccccccccc--cccccceeeecc----ccccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCC
Q 037120 67 LCPTHEGIVN--SQRSRAGDVAMI----DHRRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVG 140 (489)
Q Consensus 67 ~~~~~~~~~~--s~~~~~~~~~~~----~~~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g 140 (489)
.+.+|.+.+. +...+...+++. -++|.....+|+++.=+|-=+.+|.|..+|+|.|+++...+....
T Consensus 167 HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s------- 239 (910)
T KOG1539|consen 167 HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS------- 239 (910)
T ss_pred cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE-------
Confidence 6677776653 344555555544 234666777899999999999999999999999999998655542
Q ss_pred CcccccccccC-CCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEE
Q 037120 141 LKEDQSKHLLH-IPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAF 219 (489)
Q Consensus 141 ~~~~~~~~~~h-~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 219 (489)
+ .| .+. |++++|..||..+++++... |.+-+||+... +..... ...|.+.|....|
T Consensus 240 -F-------k~d~g~---VtslSFrtDG~p~las~~~~-G~m~~wDLe~k-----kl~~v~------~nah~~sv~~~~f 296 (910)
T KOG1539|consen 240 -F-------KQDWGR---VTSLSFRTDGNPLLASGRSN-GDMAFWDLEKK-----KLINVT------RNAHYGSVTGATF 296 (910)
T ss_pred -E-------Eccccc---eeEEEeccCCCeeEEeccCC-ceEEEEEcCCC-----eeeeee------eccccCCccccee
Confidence 1 12 122 99999999999999999988 99999999422 111111 1457788999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEECCCCCc--CceeeccC-------------------------------------------
Q 037120 220 SAVNTSRLIASDTHGVVNIWDRRVGVL--PSLELSTG------------------------------------------- 254 (489)
Q Consensus 220 ~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~------------------------------------------- 254 (489)
.|..+ .+++++.|+.+++|=..++.- ..++.-.+
T Consensus 297 l~~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~ 375 (910)
T KOG1539|consen 297 LPGEP-VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ 375 (910)
T ss_pred cCCCc-eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc
Confidence 98888 889999888888773321100 00000000
Q ss_pred -----------------------------------------------------------------CC------CceeEEE
Q 037120 255 -----------------------------------------------------------------SH------GTLNSIQ 263 (489)
Q Consensus 255 -----------------------------------------------------------------h~------~~v~~~~ 263 (489)
+. ..+++++
T Consensus 376 ~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~ 455 (910)
T KOG1539|consen 376 LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVC 455 (910)
T ss_pred cccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEE
Confidence 01 3467888
Q ss_pred EeecCCEEEEEeCCCeEEEEEcCCCccccee---ecCCccCCCCeeEEEeCCCCcceeeccccceee-------------
Q 037120 264 LHAENQIIFAAGKHGSIYLWDLRGGRTSAPF---HNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIV------------- 327 (489)
Q Consensus 264 ~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~---~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~------------- 327 (489)
.++-|++.+.|.+.|+|-+|++.+|-....+ +.|.++ |++++....++.+.+...+....
T Consensus 456 vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~----V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l 531 (910)
T KOG1539|consen 456 VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE----VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL 531 (910)
T ss_pred EeccCceEEEeccCCeEEEEEcccCeeecccccCccccCc----eeEEEecCCCceEEEccCcceEEEEecCCcceeeee
Confidence 8888999999988999999999988776666 466666 99998888777664432221111
Q ss_pred --ccceeEEEeCCCCCeEEEEEecCCceEEEEee--------ccceeeecCCCCCCcCCCCccccccCCCcceeecCCcE
Q 037120 328 --SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVY--------NSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSI 397 (489)
Q Consensus 328 --~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (489)
...+..+.++.....++ ...++--..++|.. .||..++.. .+|+|+ ++
T Consensus 532 ~l~~~~~~iv~hr~s~l~a-~~~ddf~I~vvD~~t~kvvR~f~gh~nritd--------------------~~FS~D-gr 589 (910)
T KOG1539|consen 532 RLGSSITGIVYHRVSDLLA-IALDDFSIRVVDVVTRKVVREFWGHGNRITD--------------------MTFSPD-GR 589 (910)
T ss_pred ccCCCcceeeeeehhhhhh-hhcCceeEEEEEchhhhhhHHhhccccceee--------------------eEeCCC-Cc
Confidence 12222222222222111 11222212334433 233333322 334444 78
Q ss_pred EEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCc-ceeEEEe
Q 037120 398 YAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKN-SSLLVVS 476 (489)
Q Consensus 398 ~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~d-g~i~v~~ 476 (489)
++++++.|++||+||+.++ ..+..+. ...+.+++.|+|++.++|+...| .-|.+|+
T Consensus 590 WlisasmD~tIr~wDlpt~----------~lID~~~-------------vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 590 WLISASMDSTIRTWDLPTG----------TLIDGLL-------------VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EEEEeecCCcEEEEeccCc----------ceeeeEe-------------cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 9999999999999999999 7776554 66789999999999999999988 7899998
Q ss_pred ccc
Q 037120 477 QKQ 479 (489)
Q Consensus 477 ~~~ 479 (489)
.|.
T Consensus 647 Nks 649 (910)
T KOG1539|consen 647 NKS 649 (910)
T ss_pred chh
Confidence 774
No 127
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=5.6e-20 Score=158.74 Aligned_cols=167 Identities=13% Similarity=0.174 Sum_probs=127.7
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCC-CCE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLAN-QDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~-~~~ 170 (489)
|..|...|+|+|. +|.++|+|+.|-+|+|||+.+..... .+ ..|.+. |+++.|.+.. ...
T Consensus 39 ~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg--------~l------l~Hags---itaL~F~~~~S~sh 99 (362)
T KOG0294|consen 39 FSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLG--------IL------LSHAGS---ITALKFYPPLSKSH 99 (362)
T ss_pred ccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhc--------ce------eccccc---eEEEEecCCcchhh
Confidence 6778788999997 67999999999999999999833332 22 335555 9999998764 236
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
|++|+.| |.|.+|++ . . .....++.+|...|+.++.+|.++ +-++.+.|+.+++||+-.++...+.
T Consensus 100 LlS~sdD-G~i~iw~~-----~---~----W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 100 LLSGSDD-GHIIIWRV-----G---S----WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred eeeecCC-CcEEEEEc-----C---C----eEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceee
Confidence 7788877 99999999 2 1 223444588999999999999999 9999999999999999988755332
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~ 295 (489)
.+ .+ .-+.+.|+|.|.+++.++.+ .|-+|.+.+-.....+.
T Consensus 166 ~L-~~--~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~ 206 (362)
T KOG0294|consen 166 NL-KN--KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIE 206 (362)
T ss_pred cc-CC--cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhh
Confidence 22 22 33449999999987777665 68899988766554444
No 128
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=1e-18 Score=164.22 Aligned_cols=280 Identities=12% Similarity=0.050 Sum_probs=171.5
Q ss_pred CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEec
Q 037120 108 GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIG 187 (489)
Q Consensus 108 g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~ 187 (489)
++++++++.|+.|++||+.+.+.... + ..+ .. +.+++|+|++..++++++.+ +.|++||+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~--------~------~~~-~~---~~~l~~~~dg~~l~~~~~~~-~~v~~~d~~ 61 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRT--------F------PVG-QR---PRGITLSKDGKLLYVCASDS-DTIQVIDLA 61 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEE--------E------ECC-CC---CCceEECCCCCEEEEEECCC-CeEEEEECC
Confidence 45788999999999999987443321 1 112 11 55699999987555676666 999999984
Q ss_pred cCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeec
Q 037120 188 YISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAE 267 (489)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~ 267 (489)
.. ..+.. +..+. .+..++|+|+++.++++++.|+.|++||+++.+ .+..+. +...+.+++|+|+
T Consensus 62 ~~-----~~~~~-------~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~--~~~~~~-~~~~~~~~~~~~d 125 (300)
T TIGR03866 62 TG-----EVIGT-------LPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRK--VLAEIP-VGVEPEGMAVSPD 125 (300)
T ss_pred CC-----cEEEe-------ccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCe--EEeEee-CCCCcceEEECCC
Confidence 32 11111 12222 356789999998344555678999999998754 343332 2344688999999
Q ss_pred CCEEEEEeCCC-eEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEE
Q 037120 268 NQIIFAAGKHG-SIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAF 346 (489)
Q Consensus 268 ~~~l~~~~~dg-~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~ 346 (489)
+..++++..++ .+.+||.++++....+.. ... ...++|+++++.+. +.
T Consensus 126 g~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~----~~~~~~s~dg~~l~--------------------------~~ 174 (300)
T TIGR03866 126 GKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQR----PRFAEFTADGKELW--------------------------VS 174 (300)
T ss_pred CCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCC----ccEEEECCCCCEEE--------------------------EE
Confidence 99999888754 577889987765443321 112 45566666665442 21
Q ss_pred EecCCceEEEEeeccceeeecCC-CCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeecc
Q 037120 347 HLDDGWSGVLDVYNSRVSHVHCP-PPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDY 425 (489)
Q Consensus 347 ~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~ 425 (489)
+..++...+++..++........ ....... ......++|+|++...+++.+.++.|.+||+.+.
T Consensus 175 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~--------- 239 (300)
T TIGR03866 175 SEIGGTVSVIDVATRKVIKKITFEIPGVHPE------AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY--------- 239 (300)
T ss_pred cCCCCEEEEEEcCcceeeeeeeecccccccc------cCCccceEECCCCCEEEEEcCCCCeEEEEECCCC---------
Confidence 11111111222222211110000 0000000 0111235677777776666666778999999877
Q ss_pred CcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEec-cCcceeEEEecccccc
Q 037120 426 NEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAG-TKNSSLLVVSQKQQCT 482 (489)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sg-s~dg~i~v~~~~~~~~ 482 (489)
+....+. +...+.+++|+|++..|+++ +.+|.|.||..+....
T Consensus 240 -~~~~~~~-------------~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 240 -EVLDYLL-------------VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred -cEEEEEE-------------eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 4443322 34578999999999988875 5799999998876553
No 129
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.86 E-value=4.7e-19 Score=161.98 Aligned_cols=317 Identities=11% Similarity=0.125 Sum_probs=209.8
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
.-|.|++|.++|+ +++|..+|.|.||+..+.+.... . ..|.+. |.+++...++ .|++|+.
T Consensus 247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~-------------~-~aH~gg---v~~L~~lr~G--tllSGgK 306 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQ-------------V-HAHDGG---VFSLCMLRDG--TLLSGGK 306 (626)
T ss_pred eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeE-------------e-eecCCc---eEEEEEecCc--cEeecCc
Confidence 3499999999996 67999999999999976433331 1 245555 8889998887 4666888
Q ss_pred CCCEEEEEEeccCCCCC---------cee-----------------ee--eceeeeeecCCcccCeeEEEEecCCCcEEE
Q 037120 177 RSNVVSIYDIGYISDEP---------VEV-----------------LK--TRRSVTVVGSDVQKGLSDLAFSAVNTSRLI 228 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~---------~~~-----------------~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 228 (489)
| +.|..||-...+..+ .+. +. ....+...-.+|.+..+.++.+|+.+ +++
T Consensus 307 D-Rki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~ 384 (626)
T KOG2106|consen 307 D-RKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLL 384 (626)
T ss_pred c-ceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-hee
Confidence 8 999999954322111 000 00 01112233367999999999999998 999
Q ss_pred EEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEE
Q 037120 229 ASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSL 308 (489)
Q Consensus 229 s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l 308 (489)
|++.|+.+++|+ ..++...... ..++.|+.|+|.| .+++|...|...+.|..+... -++....+ |++.+
T Consensus 385 T~gqdk~v~lW~---~~k~~wt~~~--~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~l-v~~~~d~~----~ls~v 453 (626)
T KOG2106|consen 385 TCGQDKHVRLWN---DHKLEWTKII--EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDL-VTIHTDNE----QLSVV 453 (626)
T ss_pred eccCcceEEEcc---CCceeEEEEe--cCceeEeeccCcc-eEEEeeccceEEEEeccccee-EEEEecCC----ceEEE
Confidence 999999999999 2222332322 6789999999999 888888899999999998443 33332243 49999
Q ss_pred EeCCCCcceeec------------------cccceeeccceeEEEeCCCCCeEEEEEecCC---ce--------EE----
Q 037120 309 KLASMLEKIGTL------------------KAQSKIVSQEIHSIDLDPSCSYQLAFHLDDG---WS--------GV---- 355 (489)
Q Consensus 309 ~~~~~~~~i~~~------------------~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~---w~--------~~---- 355 (489)
+|+|+|.+++-. ....+.+..+|+.++|++|++++...+.|.. |. .+
T Consensus 454 ~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvk 533 (626)
T KOG2106|consen 454 RYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVK 533 (626)
T ss_pred EEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceeccee
Confidence 999999988321 1222334578999999999999887766554 41 00
Q ss_pred EEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHh
Q 037120 356 LDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSER 435 (489)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 435 (489)
+..++-.+. +. .+.......+. .+--.....++++|.+.|.|++|...-.+.. ....+..
T Consensus 534 W~t~~c~lG--F~---v~g~s~~t~i~------a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r-------A~~he~~-- 593 (626)
T KOG2106|consen 534 WATYTCTLG--FE---VFGGSDGTDIN------AVARSHCEKLLASGDDFGKVHLFSYPCSSPR-------APSHEYG-- 593 (626)
T ss_pred eeeeEEEEE--EE---EecccCCchHH------HhhhhhhhhhhhccccCceEEEEccccCCCc-------ccceeec--
Confidence 000000000 00 00000000000 0000112678888888899999976533111 1222333
Q ss_pred hhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 436 TKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 436 ~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
+|+..|++|+|.-....+++.+.|.+|..|.
T Consensus 594 ----------ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 594 ----------GHSSHVTNVAFLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred ----------cccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence 8999999999999888888888999999985
No 130
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=6.2e-21 Score=167.44 Aligned_cols=238 Identities=16% Similarity=0.188 Sum_probs=175.6
Q ss_pred eeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEE
Q 037120 202 SVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIY 281 (489)
Q Consensus 202 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~ 281 (489)
.|+..+.||.++|.+++=+|.....+++|+.||.|+|||+.+.+ +...+.+|.+.|..|++.. ..++++|.|.+|+
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~--~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE--CIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVK 132 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh--hhheeecccCceeeEEecc--cceEEecCCccee
Confidence 35666799999999999999886689999999999999999866 8888999999999999976 6789999999999
Q ss_pred EEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccc--------------eeeccceeEEEeCCCCCeEEEEE
Q 037120 282 LWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQS--------------KIVSQEIHSIDLDPSCSYQLAFH 347 (489)
Q Consensus 282 lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~--------------~~~~~~i~~~~~~p~~~~~~~~~ 347 (489)
.|-+.. ..++++.+.. . +..+.-+..+..+++..... .-....|.++.|+|....+++++
T Consensus 133 ~wk~~~-~p~~tilg~s-~----~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 133 QWKIDG-PPLHTILGKS-V----YLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC 206 (433)
T ss_pred eeeccC-Ccceeeeccc-c----ccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeee
Confidence 999775 3455554422 2 34443333333333222111 11234578899999998888887
Q ss_pred ecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCc
Q 037120 348 LDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNE 427 (489)
Q Consensus 348 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~ 427 (489)
..+.-..+++...+...+. ....+.-..+||.| ...-+++|++|.+++.+|+..-. +
T Consensus 207 ~sDrsIvLyD~R~~~Pl~K-------------Vi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~---------~ 263 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKK-------------VILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLS---------R 263 (433)
T ss_pred ccCCceEEEecccCCccce-------------eeeeccccceecCc-cccceeeccccccceehhhhhhc---------c
Confidence 5555334555554443321 11225557789999 57777888999999999997651 3
Q ss_pred ccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccccccc
Q 037120 428 DIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCTSD 484 (489)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~~~ 484 (489)
.+.... +|...|.+|+|+|.|.-|++||-|.+|+||-..+...+|
T Consensus 264 p~~v~~------------dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd 308 (433)
T KOG0268|consen 264 PLNVHK------------DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD 308 (433)
T ss_pred cchhhc------------ccceeEEEeccCCCcchhccccccceEEEeecCCCcchh
Confidence 344444 999999999999999999999999999999776655554
No 131
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.1e-20 Score=188.70 Aligned_cols=293 Identities=15% Similarity=0.182 Sum_probs=198.6
Q ss_pred EEEECCCCc-EEEEEec----------CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCC
Q 037120 101 ALDFDCKGI-YLVSATR----------SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 101 ~~~fs~~g~-~la~g~~----------dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~ 169 (489)
.++|+|++. +||+|+. +.++.||.+..... .......+.....+....++|.+.+..
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~------------~~dlk~~~s~~s~~rF~kL~W~~~g~~ 78 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDE------------SSDLKPVGSLQSSNRFNKLAWGSYGSH 78 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCc------------cccccccccccccccceeeeecccCCC
Confidence 457899886 6666643 44556665543111 111112232223333677999887765
Q ss_pred ---EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc
Q 037120 170 ---EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL 246 (489)
Q Consensus 170 ---~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 246 (489)
+++.|.+| |.|-+||....... . ....+.+...|++.|..+.|++...++|++|+.||.|.|||+...+.
T Consensus 79 ~~GlIaGG~ed-G~I~ly~p~~~~~~--~----~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t 151 (1049)
T KOG0307|consen 79 SHGLIAGGLED-GNIVLYDPASIIAN--A----SEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET 151 (1049)
T ss_pred ccceeeccccC-CceEEecchhhccC--c----chHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCC
Confidence 68888877 99999999543111 1 11122333779999999999999998999999999999999998765
Q ss_pred CceeeccCCCCceeEEEEeecCCEEE-EEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccce
Q 037120 247 PSLELSTGSHGTLNSIQLHAENQIIF-AAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSK 325 (489)
Q Consensus 247 ~~~~~~~~h~~~v~~~~~~p~~~~l~-~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~ 325 (489)
+..-......+.|.+++|+..-.+++ +++.+|.+.|||+|..+.+-.+..+... ..+..++|+|+...
T Consensus 152 P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~--~~~S~l~WhP~~aT--------- 220 (1049)
T KOG0307|consen 152 PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGR--MHCSVLAWHPDHAT--------- 220 (1049)
T ss_pred CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCc--cceeeeeeCCCCce---------
Confidence 52211223467899999998765554 5555899999999987766666554432 22566677766521
Q ss_pred eeccceeEEEeCCCCCeEEEEEecCC--ceEEE---------EeeccceeeecCCCCCCcCCCCccccccCCCcceeecC
Q 037120 326 IVSQEIHSIDLDPSCSYQLAFHLDDG--WSGVL---------DVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLST 394 (489)
Q Consensus 326 ~~~~~i~~~~~~p~~~~~~~~~~~~~--w~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (489)
.+++++.++. ...++ +++.+|... +-.+.|.+.
T Consensus 221 ----------------ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G--------------------ilslsWc~~ 264 (1049)
T KOG0307|consen 221 ----------------QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG--------------------ILSLSWCPQ 264 (1049)
T ss_pred ----------------eeeeecCCCCCceeEeecccccCCchhhhcccccc--------------------eeeeccCCC
Confidence 1122222222 01222 222333333 334567777
Q ss_pred CcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC-eEEeccCcceeE
Q 037120 395 NSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN-TIVAGTKNSSLL 473 (489)
Q Consensus 395 ~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~-~i~sgs~dg~i~ 473 (489)
+..++++++.|+.|.+|+..++ +.+.++. .-.+.+..+.|+|..+ .|++++-||.|-
T Consensus 265 D~~lllSsgkD~~ii~wN~~tg----------Evl~~~p------------~~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 265 DPRLLLSSGKDNRIICWNPNTG----------EVLGELP------------AQGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred CchhhhcccCCCCeeEecCCCc----------eEeeecC------------CCCcceeeeeecCCCcchhhhheecccee
Confidence 7899999999999999999999 8888887 6678899999999997 889999999999
Q ss_pred EEeccccc
Q 037120 474 VVSQKQQC 481 (489)
Q Consensus 474 v~~~~~~~ 481 (489)
|++....+
T Consensus 323 I~sl~~~~ 330 (1049)
T KOG0307|consen 323 IYSLQGTD 330 (1049)
T ss_pred eeeeecCC
Confidence 99877655
No 132
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.85 E-value=1.1e-19 Score=172.00 Aligned_cols=342 Identities=13% Similarity=0.136 Sum_probs=218.7
Q ss_pred cccCCCceeEEEECCCCc---EEEEEecCCeEEEEeCCCcccccC---C------CC-C--CC-CCc----ccccccccC
Q 037120 92 RSFGKPGISALDFDCKGI---YLVSATRSGCLTVHDFESLYYQCN---G------TL-P--GV-GLK----EDQSKHLLH 151 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~---~la~g~~dg~i~vwd~~~~~~~~~---~------~~-~--~~-g~~----~~~~~~~~h 151 (489)
+..|..-|.+++|...+. +||+++.|..||||.+.-...... + ++ + .. +.. .-+.-+.||
T Consensus 187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH 266 (764)
T KOG1063|consen 187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH 266 (764)
T ss_pred eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence 345666799999987654 889999999999998753221110 0 00 0 00 000 001122356
Q ss_pred CCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe
Q 037120 152 IPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD 231 (489)
Q Consensus 152 ~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s 231 (489)
..= |.++.|+|.+. .|++++.| .++.+|......+-=...+. +-...|......+..|+|+++ .+++-+
T Consensus 267 eDW---V~sv~W~p~~~-~LLSASaD-ksmiiW~pd~~tGiWv~~vR-----lGe~gg~a~GF~g~lw~~n~~-~ii~~g 335 (764)
T KOG1063|consen 267 EDW---VYSVWWHPEGL-DLLSASAD-KSMIIWKPDENTGIWVDVVR-----LGEVGGSAGGFWGGLWSPNSN-VIIAHG 335 (764)
T ss_pred ccc---eEEEEEccchh-hheecccC-cceEEEecCCccceEEEEEE-----eecccccccceeeEEEcCCCC-EEEEec
Confidence 555 88999999984 66677777 99999987433211111111 111234556789999999998 999999
Q ss_pred CCCcEEEEECCCCC-cCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-----cceeecCCccCCCCe
Q 037120 232 THGVVNIWDRRVGV-LPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-----SAPFHNHKEVCHLPL 305 (489)
Q Consensus 232 ~dg~i~iwd~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-----~~~~~~~~~~~~~~v 305 (489)
.-|..++|-..... ......+.+|.+.|..++|+|.|.+++++|.|.+-|||--- |+. +..-+-|.-. +
T Consensus 336 ~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyD----l 410 (764)
T KOG1063|consen 336 RTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYD----L 410 (764)
T ss_pred ccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc-ccccceeeeccccccccc----c
Confidence 99999999833221 11233456999999999999999999999999999998654 222 1111222222 6
Q ss_pred eEEEeCC-CCcce---------------------------------------------eecc------------------
Q 037120 306 TSLKLAS-MLEKI---------------------------------------------GTLK------------------ 321 (489)
Q Consensus 306 ~~l~~~~-~~~~i---------------------------------------------~~~~------------------ 321 (489)
++++|-+ +-+++ .+.+
T Consensus 411 ~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 411 TCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 6777666 33333 0000
Q ss_pred ----------------------------ccceeeccceeEEEeCCCCCeEEEEEecCCc--e--EEEEeeccceeeecCC
Q 037120 322 ----------------------------AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGW--S--GVLDVYNSRVSHVHCP 369 (489)
Q Consensus 322 ----------------------------~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w--~--~~~~~~~~~~~~~~~~ 369 (489)
.-...|..+|++++.+|+++.+++++....- . .++++.
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~---------- 560 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTA---------- 560 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEecc----------
Confidence 0112335678999999999998888776551 1 122211
Q ss_pred CCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCC
Q 037120 370 PPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSE 449 (489)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 449 (489)
.|........+.+.+.++.|+|+ +.||++.|.|.++.+|........ .. .....+ .|..
T Consensus 561 --~W~~~~~L~~HsLTVT~l~FSpd-g~~LLsvsRDRt~sl~~~~~~~~~--e~----~fa~~k------------~HtR 619 (764)
T KOG1063|consen 561 --NWLQVQELEGHSLTVTRLAFSPD-GRYLLSVSRDRTVSLYEVQEDIKD--EF----RFACLK------------AHTR 619 (764)
T ss_pred --chhhhheecccceEEEEEEECCC-CcEEEEeecCceEEeeeeecccch--hh----hhcccc------------ccce
Confidence 12222222222333445566666 678888999999999998655100 00 011133 8999
Q ss_pred ceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 450 GVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 450 ~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
-|.+++|+|++.++||+|.|.++.||...+.
T Consensus 620 IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 620 IIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 9999999999999999999999999987765
No 133
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.85 E-value=8.9e-19 Score=169.33 Aligned_cols=182 Identities=16% Similarity=0.204 Sum_probs=136.4
Q ss_pred eeEEEECCC--CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 99 ISALDFDCK--GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 99 V~~~~fs~~--g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
|+++ ++|. =+.++.|+.+|.+++|++.+.+.+.. + .++... |+++.-+|--. +++.|..
T Consensus 162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~--------f------~~~~s~---IT~ieqsPaLD-VVaiG~~ 222 (910)
T KOG1539|consen 162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYT--------F------QEFFSR---ITAIEQSPALD-VVAIGLE 222 (910)
T ss_pred eeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEE--------e------cccccc---eeEeccCCcce-EEEEecc
Confidence 7776 5676 36789999999999999999655542 2 223333 99999998764 8888888
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
+ |+|.|++++.. +.+...+ ...+.|++++|.-||..++++|+..|.+.+||++..+.. ......|.
T Consensus 223 ~-G~ViifNlK~d-----kil~sFk-------~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~-~v~~nah~ 288 (910)
T KOG1539|consen 223 N-GTVIIFNLKFD-----KILMSFK-------QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI-NVTRNAHY 288 (910)
T ss_pred C-ceEEEEEcccC-----cEEEEEE-------ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee-eeeecccc
Confidence 8 99999999433 3333322 124799999999999988899998899999999976533 22344899
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc----cceeecCCccCCCCeeEEEeC-CCCcce
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT----SAPFHNHKEVCHLPLTSLKLA-SMLEKI 317 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~----~~~~~~~~~~~~~~v~~l~~~-~~~~~i 317 (489)
+.|..+.|-|..+.+++++.|+.+++|=.+++.- ++.-.+|..+ ..++.|. ..|..+
T Consensus 289 ~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~P----p~~irfy~~~g~~i 350 (910)
T KOG1539|consen 289 GSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAP----PSCIRFYGSQGHFI 350 (910)
T ss_pred CCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCC----chheeeeccCcEEE
Confidence 9999999999999999999999999886554432 5555677755 7888877 344444
No 134
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=9.7e-20 Score=170.67 Aligned_cols=171 Identities=14% Similarity=0.120 Sum_probs=126.3
Q ss_pred ccCCCceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 93 SFGKPGISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
..|..-|..+.|+|- ..+||+|+.|..|+||.+..+....- ..+... .+|.. ..|-++.|+|...+++
T Consensus 76 ~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L--------Sape~~-~g~~~--~~vE~l~fHpTaDgil 144 (1012)
T KOG1445|consen 76 AAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL--------SAPEID-VGGGN--VIVECLRFHPTADGIL 144 (1012)
T ss_pred ecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc--------CCccee-ecCCc--eEEEEeecccCcCceE
Confidence 445566999999995 46889999999999999985333221 011111 12221 2288999999999999
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++ .|+++|||+.... ....+.+|.+.|.+..|+.||. ++++++.|..|+|||-|.... .++.
T Consensus 145 ~s~a--~g~v~i~D~stqk------------~~~el~~h~d~vQSa~WseDG~-llatscKdkqirifDPRa~~~-piQ~ 208 (1012)
T KOG1445|consen 145 ASGA--HGSVYITDISTQK------------TAVELSGHTDKVQSADWSEDGK-LLATSCKDKQIRIFDPRASME-PIQT 208 (1012)
T ss_pred Eecc--CceEEEEEcccCc------------eeecccCCchhhhccccccCCc-eEeeecCCcceEEeCCccCCC-cccc
Confidence 9999 7999999994321 1223488999999999999999 999999999999999998544 3556
Q ss_pred ccCCCCc-eeEEEEeecCCEEEEEeCC----CeEEEEEcCCCcc
Q 037120 252 STGSHGT-LNSIQLHAENQIIFAAGKH----GSIYLWDLRGGRT 290 (489)
Q Consensus 252 ~~~h~~~-v~~~~~~p~~~~l~~~~~d----g~i~lwd~~~~~~ 290 (489)
..+|.+- =.-+.|.-+-..|+++|.+ ..|++||.+....
T Consensus 209 te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~ 252 (1012)
T KOG1445|consen 209 TEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGA 252 (1012)
T ss_pred ccccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCC
Confidence 6777643 2356777666678888763 5699999987543
No 135
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=5.8e-19 Score=150.65 Aligned_cols=290 Identities=13% Similarity=0.178 Sum_probs=180.4
Q ss_pred cccccCCCceeEEEECCCC-cEEEEEecC-------CeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEE
Q 037120 90 HRRSFGKPGISALDFDCKG-IYLVSATRS-------GCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAV 161 (489)
Q Consensus 90 ~~~~~~~~~V~~~~fs~~g-~~la~g~~d-------g~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v 161 (489)
..|..+...|..++-+|-. ..|+++..+ -.+.||.+......... .+++... ..-+.....|.|+
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~-----~tlE~v~--~Ldteavg~i~cv 129 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS-----STLECVA--SLDTEAVGKINCV 129 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc-----chhhHhh--cCCHHHhCceeeE
Confidence 3455555669999999865 455665441 24689988762222100 0111110 0111122239999
Q ss_pred EeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC-cEEEEEeCCCcEEEEE
Q 037120 162 RWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT-SRLIASDTHGVVNIWD 240 (489)
Q Consensus 162 ~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~s~dg~i~iwd 240 (489)
.|.|++. .+++.. ++.|.+|++...+... ..+..... .+|....++-+|+|..+ +.+++.+ |+++..||
T Consensus 130 ew~Pns~-klasm~--dn~i~l~~l~ess~~v-aev~ss~s-----~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D 199 (370)
T KOG1007|consen 130 EWEPNSD-KLASMD--DNNIVLWSLDESSKIV-AEVLSSES-----AEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWD 199 (370)
T ss_pred EEcCCCC-eeEEec--cCceEEEEcccCcchh-eeeccccc-----ccccceecccccCCCCccceEEEeC-CCcEEEEE
Confidence 9999775 676666 5899999996554321 22222211 45777888999999433 2666555 89999999
Q ss_pred CCCCCcCceeeccCCCCceeEEEEeecCCEE-EEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCCccee
Q 037120 241 RRVGVLPSLELSTGSHGTLNSIQLHAENQII-FAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l-~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
+|+.+.. ..+..+|...|..+.|+|+-+++ +++|.||.|+|||.|+.+. +..+.+|... |.++.|+|.-
T Consensus 200 ~RT~~~~-~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW----vW~VRfn~~h---- 270 (370)
T KOG1007|consen 200 LRTMKKN-NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW----VWAVRFNPEH---- 270 (370)
T ss_pred ccchhhh-cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceE----EEEEEecCcc----
Confidence 9986533 33445888899999999998765 4556699999999998765 8888888888 8887777642
Q ss_pred eccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEE
Q 037120 319 TLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIY 398 (489)
Q Consensus 319 ~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (489)
..+
T Consensus 271 -----------------------------------------------------------------------------dqL 273 (370)
T KOG1007|consen 271 -----------------------------------------------------------------------------DQL 273 (370)
T ss_pred -----------------------------------------------------------------------------ceE
Confidence 334
Q ss_pred EEeecCCCcEEEEeccCCCCCCeeeccC--c---ccchhhHhhh--h-cccCCcccCCCceEEEEeeCCCC-eEEeccCc
Q 037120 399 AVGSSSDHGIHLLDFFPGSSSPSHVDYN--E---DIESLSERTK--L-KKENRFVPLSEGVTACVTHPLNN-TIVAGTKN 469 (489)
Q Consensus 399 l~sgs~d~~i~vwd~~~~~~~~~~~~~~--~---~~~~~~~~~~--~-~~~~~~~~h~~~V~~va~~p~~~-~i~sgs~d 469 (489)
+++||.|..|.+|...+-...+ ++... + .......+.+ + +....+-.|++.|.+++|+...+ .||+=+.|
T Consensus 274 iLs~~SDs~V~Lsca~svSSE~-qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD 352 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCASSVSSEQ-QIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD 352 (370)
T ss_pred EEecCCCceeEEEecccccccc-ccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccC
Confidence 5555556666665554332111 11000 0 0000000000 0 01113448999999999999888 67888999
Q ss_pred ceeEEEeccccccc
Q 037120 470 SSLLVVSQKQQCTS 483 (489)
Q Consensus 470 g~i~v~~~~~~~~~ 483 (489)
|++.|=..++.-..
T Consensus 353 GRviIs~V~r~~ky 366 (370)
T KOG1007|consen 353 GRVIISSVPRFLKY 366 (370)
T ss_pred ceEEeecCChhhhh
Confidence 99998666655433
No 136
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=7.7e-20 Score=166.54 Aligned_cols=308 Identities=16% Similarity=0.115 Sum_probs=209.9
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCC-CE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQ-DE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~-~~ 170 (489)
+..|...|+.+.|+..|..|++|+.|..|.+||+........ -..+|... |....|-|... .-
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~-------------f~SGH~~N---vfQaKFiP~s~d~t 201 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS-------------FESGHCNN---VFQAKFIPFSGDRT 201 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc-------------cccccccc---hhhhhccCCCCCcC
Confidence 566777799999999999999999999999999998443321 11457766 44477877642 35
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-ce
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SL 249 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~ 249 (489)
+++++.| |.|++=.+.... .+.... .+..|.+.|..++.-|+.++.|.+++.|+.+.-.|+++.... .+
T Consensus 202 i~~~s~d-gqvr~s~i~~t~----~~e~t~-----rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~ 271 (559)
T KOG1334|consen 202 IVTSSRD-GQVRVSEILETG----YVENTK-----RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF 271 (559)
T ss_pred ceecccc-Cceeeeeecccc----ceecce-----ecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee
Confidence 6677777 999988873211 111111 136799999999999999999999999999999999986432 12
Q ss_pred eeccCCCC---ceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCcc------cceeecCCc--cCCCCeeEEEeCCCCc-c
Q 037120 250 ELSTGSHG---TLNSIQLHAENQ-IIFAAGKHGSIYLWDLRGGRT------SAPFHNHKE--VCHLPLTSLKLASMLE-K 316 (489)
Q Consensus 250 ~~~~~h~~---~v~~~~~~p~~~-~l~~~~~dg~i~lwd~~~~~~------~~~~~~~~~--~~~~~v~~l~~~~~~~-~ 316 (489)
.....+.. ..++++.+|.+. .+++++.|-.+++||.+.... +..|..|.- .....|++++|+.++. .
T Consensus 272 ~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 272 VCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL 351 (559)
T ss_pred eeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence 12223334 678999999887 566667799999999987432 233322110 0013488888886664 4
Q ss_pred eeeccccceeeccceeEEEeCCCCCeEEEEEecCC-----c---eEEEE-eeccceeeecCCCCCCcCCCCccccccCCC
Q 037120 317 IGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDG-----W---SGVLD-VYNSRVSHVHCPPPAWLSDSNNSADQLHLR 387 (489)
Q Consensus 317 i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~-----w---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (489)
+++.... .-|+..-....+ - ..... +|+||.+.-. ++
T Consensus 352 LaSYnDe----------------~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T------------------VK 397 (559)
T KOG1334|consen 352 LASYNDE----------------DIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT------------------VK 397 (559)
T ss_pred eeeeccc----------------ceEEeccccccCCCCCCCcchhhccchhhcccccccc------------------cc
Confidence 4432211 111111011111 0 01222 3667765432 12
Q ss_pred cceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEecc
Q 037120 388 KPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGT 467 (489)
Q Consensus 388 ~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs 467 (489)
.+-|.-....|+++||+-|.|.||+-.++ +++..++ +-...|+|+.-||..+.||++|
T Consensus 398 gVNFfGPrsEyVvSGSDCGhIFiW~K~t~----------eii~~Me------------gDr~VVNCLEpHP~~PvLAsSG 455 (559)
T KOG1334|consen 398 GVNFFGPRSEYVVSGSDCGHIFIWDKKTG----------EIIRFME------------GDRHVVNCLEPHPHLPVLASSG 455 (559)
T ss_pred eeeeccCccceEEecCccceEEEEecchh----------HHHHHhh------------cccceEeccCCCCCCchhhccC
Confidence 22333333889999999999999999999 8998888 6666999999999999999999
Q ss_pred CcceeEEEeccccc
Q 037120 468 KNSSLLVVSQKQQC 481 (489)
Q Consensus 468 ~dg~i~v~~~~~~~ 481 (489)
.|-.|+||+.....
T Consensus 456 id~DVKIWTP~~~e 469 (559)
T KOG1334|consen 456 IDHDVKIWTPLTAE 469 (559)
T ss_pred CccceeeecCCccc
Confidence 99999999885443
No 137
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.7e-19 Score=168.32 Aligned_cols=234 Identities=15% Similarity=0.234 Sum_probs=174.7
Q ss_pred eEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCC
Q 037120 100 SALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSN 179 (489)
Q Consensus 100 ~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g 179 (489)
+=++|+. .+.||+|. ...|.+|+..+...... . ..+ ...|+++.|++++. .|+.|..+ |
T Consensus 181 nlldWss-~n~laVal-g~~vylW~~~s~~v~~l--------~------~~~---~~~vtSv~ws~~G~-~LavG~~~-g 239 (484)
T KOG0305|consen 181 NLLDWSS-ANVLAVAL-GQSVYLWSASSGSVTEL--------C------SFG---EELVTSVKWSPDGS-HLAVGTSD-G 239 (484)
T ss_pred hHhhccc-CCeEEEEe-cceEEEEecCCCceEEe--------E------ecC---CCceEEEEECCCCC-EEEEeecC-C
Confidence 3455663 44666665 45799999988543321 0 111 22399999999996 77777777 9
Q ss_pred EEEEEEeccCCCCCceeeeeceeeeeecCC-cccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCc
Q 037120 180 VVSIYDIGYISDEPVEVLKTRRSVTVVGSD-VQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGT 258 (489)
Q Consensus 180 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~ 258 (489)
.|.|||..... ..+. +.+ |...|-+++|. +. .+.+|+.|+.|..+|++..+.. ...+.+|...
T Consensus 240 ~v~iwD~~~~k--------~~~~----~~~~h~~rvg~laW~--~~-~lssGsr~~~I~~~dvR~~~~~-~~~~~~H~qe 303 (484)
T KOG0305|consen 240 TVQIWDVKEQK--------KTRT----LRGSHASRVGSLAWN--SS-VLSSGSRDGKILNHDVRISQHV-VSTLQGHRQE 303 (484)
T ss_pred eEEEEehhhcc--------cccc----ccCCcCceeEEEecc--Cc-eEEEecCCCcEEEEEEecchhh-hhhhhcccce
Confidence 99999993221 1222 245 99999999998 44 8999999999999999987633 3347799999
Q ss_pred eeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCC
Q 037120 259 LNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDP 338 (489)
Q Consensus 259 v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p 338 (489)
|..+.|++++.++++||.|+.+.|||......+..+..|..+ |.+++|+|--.
T Consensus 304 VCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aA----VKA~awcP~q~----------------------- 356 (484)
T KOG0305|consen 304 VCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAA----VKALAWCPWQS----------------------- 356 (484)
T ss_pred eeeeEECCCCCeeccCCCccceEeccCCCccccEEEecccee----eeEeeeCCCcc-----------------------
Confidence 999999999999999999999999999877778888888877 88888876321
Q ss_pred CCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEE-eecCCCcEEEEeccCCC
Q 037120 339 SCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAV-GSSSDHGIHLLDFFPGS 417 (489)
Q Consensus 339 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sgs~d~~i~vwd~~~~~ 417 (489)
+.+++ +|+.|++|++||..++
T Consensus 357 ---------------------------------------------------------~lLAsGGGs~D~~i~fwn~~~g- 378 (484)
T KOG0305|consen 357 ---------------------------------------------------------GLLATGGGSADRCIKFWNTNTG- 378 (484)
T ss_pred ---------------------------------------------------------CceEEcCCCcccEEEEEEcCCC-
Confidence 11111 3678999999999998
Q ss_pred CCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEec--cCcceeEEEec
Q 037120 418 SSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAG--TKNSSLLVVSQ 477 (489)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sg--s~dg~i~v~~~ 477 (489)
+.+..+. -...|..+.|+|..+.|+++ -.+..|.||.-
T Consensus 379 ---------~~i~~vd-------------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 379 ---------ARIDSVD-------------TGSQVCSLIWSKKYKELLSTHGYSENQITLWKY 418 (484)
T ss_pred ---------cEecccc-------------cCCceeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence 6666554 45679999999998766554 24667777754
No 138
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.84 E-value=7.2e-20 Score=167.69 Aligned_cols=254 Identities=14% Similarity=0.220 Sum_probs=162.2
Q ss_pred ccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcE
Q 037120 147 KHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSR 226 (489)
Q Consensus 147 ~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 226 (489)
.+.+|+.. |+++++.|.|. .|++|+.| .+|++||+....... ..++... ..-...|++++|++.+. .
T Consensus 162 ~l~hgtk~---Vsal~~Dp~Ga-R~~sGs~D-y~v~~wDf~gMdas~-~~fr~l~------P~E~h~i~sl~ys~Tg~-~ 228 (641)
T KOG0772|consen 162 QLKHGTKI---VSALAVDPSGA-RFVSGSLD-YTVKFWDFQGMDASM-RSFRQLQ------PCETHQINSLQYSVTGD-Q 228 (641)
T ss_pred eccCCceE---EEEeeecCCCc-eeeecccc-ceEEEEecccccccc-hhhhccC------cccccccceeeecCCCC-e
Confidence 34556666 99999999996 88999999 999999996543321 1121111 22345899999999999 8
Q ss_pred EEEEeCCCcEEEEECCCCCcC-c---------eeeccCCCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCcc-ccee
Q 037120 227 LIASDTHGVVNIWDRRVGVLP-S---------LELSTGSHGTLNSIQLHAENQ-IIFAAGKHGSIYLWDLRGGRT-SAPF 294 (489)
Q Consensus 227 l~s~s~dg~i~iwd~~~~~~~-~---------~~~~~~h~~~v~~~~~~p~~~-~l~~~~~dg~i~lwd~~~~~~-~~~~ 294 (489)
|+..+.....+|+|-.-.+.. + +...++|...++|.+|+|..+ .+++++.||++||||+.+.+. +..|
T Consensus 229 iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi 308 (641)
T KOG0772|consen 229 ILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI 308 (641)
T ss_pred EEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE
Confidence 888888889999996532210 1 123449999999999999765 466777799999999998665 3444
Q ss_pred ecCC-ccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCC---ce-------EEEEeeccce
Q 037120 295 HNHK-EVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDG---WS-------GVLDVYNSRV 363 (489)
Q Consensus 295 ~~~~-~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~---w~-------~~~~~~~~~~ 363 (489)
+... +....+++.++|+ ++++.+++++.|+. |. ....+...|.
T Consensus 309 k~k~~~g~Rv~~tsC~~n--------------------------rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~ 362 (641)
T KOG0772|consen 309 KTKPAGGKRVPVTSCAWN--------------------------RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHL 362 (641)
T ss_pred eeccCCCcccCceeeecC--------------------------CCcchhhhcccCCceeeeecCCcccccceEeeeccC
Confidence 3211 1112334455555 55555444444444 32 1122222232
Q ss_pred e--eecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhccc
Q 037120 364 S--HVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKE 441 (489)
Q Consensus 364 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (489)
. .+.|+ .|+.+ +.+|++=+.|++++|||+.... +.+.... +.
T Consensus 363 ~g~~Itsi--~FS~d-------------------g~~LlSRg~D~tLKvWDLrq~k---------kpL~~~t-----gL- 406 (641)
T KOG0772|consen 363 PGQDITSI--SFSYD-------------------GNYLLSRGFDDTLKVWDLRQFK---------KPLNVRT-----GL- 406 (641)
T ss_pred CCCceeEE--Eeccc-------------------cchhhhccCCCceeeeeccccc---------cchhhhc-----CC-
Confidence 2 22222 34444 7888999999999999998661 2222222 00
Q ss_pred CCcccCCCceEEEEeeCCCCeEEeccC------cceeEEEeccc
Q 037120 442 NRFVPLSEGVTACVTHPLNNTIVAGTK------NSSLLVVSQKQ 479 (489)
Q Consensus 442 ~~~~~h~~~V~~va~~p~~~~i~sgs~------dg~i~v~~~~~ 479 (489)
...-+-+.++|+|+...|++|+. .|.+++|....
T Consensus 407 ----~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 407 ----PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred ----CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 12234578999999999999863 46677776543
No 139
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.84 E-value=9.2e-20 Score=173.00 Aligned_cols=245 Identities=18% Similarity=0.266 Sum_probs=173.5
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC--CCC
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA--NQD 169 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~--~~~ 169 (489)
....+.||+|++.+|+|++||+|..-|.++||++...+... . ...|..+ |.|+.|+.. +..
T Consensus 455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~--------~------~eAHesE---ilcLeyS~p~~~~k 517 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC--------F------MEAHESE---ILCLEYSFPVLTNK 517 (1080)
T ss_pred hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhh--------h------eecccce---eEEEeecCchhhhH
Confidence 34456789999999999999999999999999999855444 1 2346666 999999743 345
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC-cEEEEEeCCCcEEEEECCCCCcCc
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT-SRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
+|++++.| ..|+|||+.. .. ....++.+|+..|+++.|--.|- ..+++++.|..|.+--.+... .
T Consensus 518 LLASasrd-RlIHV~Dv~r-------ny----~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~--~ 583 (1080)
T KOG1408|consen 518 LLASASRD-RLIHVYDVKR-------NY----DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS--S 583 (1080)
T ss_pred hhhhccCC-ceEEEEeccc-------cc----chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc--C
Confidence 89999998 9999999921 11 22334589999999999987772 378999999988543322111 1
Q ss_pred eeeccC-----CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeecccc
Q 037120 249 LELSTG-----SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQ 323 (489)
Q Consensus 249 ~~~~~~-----h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~ 323 (489)
...+.. ....++.++..|+..++++++.|..|+|||+.+++..+.|++..+. +|
T Consensus 584 g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~------------eG--------- 642 (1080)
T KOG1408|consen 584 GRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH------------EG--------- 642 (1080)
T ss_pred ceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccC------------CC---------
Confidence 111221 1357889999999999999999999999999999999999864322 11
Q ss_pred ceeeccceeEEEeCCCCCeEEEEEecCCceEEEEee--------ccceeeecCCCCCCcCCCCccccccCCCcceeecCC
Q 037120 324 SKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVY--------NSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTN 395 (489)
Q Consensus 324 ~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (489)
....+..+|.|.|+++.+.|.+.. +++.+ .||...+... .|..+
T Consensus 643 ------~lIKv~lDPSgiY~atScsdktl~-~~Df~sgEcvA~m~GHsE~VTG~--kF~nD------------------- 694 (1080)
T KOG1408|consen 643 ------DLIKVILDPSGIYLATSCSDKTLC-FVDFVSGECVAQMTGHSEAVTGV--KFLND------------------- 694 (1080)
T ss_pred ------ceEEEEECCCccEEEEeecCCceE-EEEeccchhhhhhcCcchheeee--eeccc-------------------
Confidence 123355667777777776666532 33333 3433332222 33333
Q ss_pred cEEEEeecCCCcEEEEeccCC
Q 037120 396 SIYAVGSSSDHGIHLLDFFPG 416 (489)
Q Consensus 396 ~~~l~sgs~d~~i~vwd~~~~ 416 (489)
-+.+++.+.||+|.||.+...
T Consensus 695 CkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 695 CKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred chhheeecCCceEEEEECchh
Confidence 567888999999999998754
No 140
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=6.7e-19 Score=151.84 Aligned_cols=241 Identities=16% Similarity=0.192 Sum_probs=157.8
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|++|.|+|.+..+|++.. ||++++||+.... + ... -.|..++.+++|.++. .+++|+.||.|+
T Consensus 16 IS~v~f~~~~~~LLvssW--DgslrlYdv~~~~------l--~~~-----~~~~~plL~c~F~d~~--~~~~G~~dg~vr 78 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSW--DGSLRLYDVPANS------L--KLK-----FKHGAPLLDCAFADES--TIVTGGLDGQVR 78 (323)
T ss_pred eeeEEEcCcCCcEEEEec--cCcEEEEeccchh------h--hhh-----eecCCceeeeeccCCc--eEEEeccCceEE
Confidence 999999998877777665 4999999994331 1 111 3477899999999744 699999999999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
.+|+.++.. . .+..|..+|.|+..++-...+++||.|++|++||.|.......+.. .+. |.++.
T Consensus 79 ~~Dln~~~~--~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kk----Vy~~~-------- 142 (323)
T KOG1036|consen 79 RYDLNTGNE--D-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKK----VYCMD-------- 142 (323)
T ss_pred EEEecCCcc--e-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-Cce----EEEEe--------
Confidence 999999862 2 4558999999999999989999999999999999997333333221 112 33332
Q ss_pred eeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcE
Q 037120 318 GTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSI 397 (489)
Q Consensus 318 ~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (489)
. .+..+++++.+... .++++.. ... .+ ....+...+..|.++..|++.-
T Consensus 143 ------------------v--~g~~LvVg~~~r~v-~iyDLRn---~~~-----~~--q~reS~lkyqtR~v~~~pn~eG 191 (323)
T KOG1036|consen 143 ------------------V--SGNRLVVGTSDRKV-LIYDLRN---LDE-----PF--QRRESSLKYQTRCVALVPNGEG 191 (323)
T ss_pred ------------------c--cCCEEEEeecCceE-EEEEccc---ccc-----hh--hhccccceeEEEEEEEecCCCc
Confidence 2 23344444443320 1111111 000 00 0011111244566778887777
Q ss_pred EEEeecCCCcEEEEeccCCC-------CCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcc
Q 037120 398 YAVGSSSDHGIHLLDFFPGS-------SSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNS 470 (489)
Q Consensus 398 ~l~sgs~d~~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg 470 (489)
|+++ |-||.|.+=.+.... +.+||.....-. ...-+|++++|||-..+|||||.||
T Consensus 192 y~~s-SieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~----------------~~~yPVNai~Fhp~~~tfaTgGsDG 254 (323)
T KOG1036|consen 192 YVVS-SIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDT----------------EIIYPVNAIAFHPIHGTFATGGSDG 254 (323)
T ss_pred eEEE-eecceEEEEccCCchHHhhhceeEEeeecccCCc----------------eEEEEeceeEeccccceEEecCCCc
Confidence 7765 789988876665541 011322211111 1123799999999999999999999
Q ss_pred eeEEEeccc
Q 037120 471 SLLVVSQKQ 479 (489)
Q Consensus 471 ~i~v~~~~~ 479 (489)
.|.+|....
T Consensus 255 ~V~~Wd~~~ 263 (323)
T KOG1036|consen 255 IVNIWDLFN 263 (323)
T ss_pred eEEEccCcc
Confidence 999996543
No 141
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=7.6e-19 Score=155.83 Aligned_cols=328 Identities=14% Similarity=0.108 Sum_probs=200.1
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCccccccccc--CCCCCCceeEEEeeCCCCC
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLL--HIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~--h~~~~~~V~~v~~~~~~~~ 169 (489)
+..|...|++|.|+.++++||+|+.|-.++||+++..-.... ..+ ....+ |.+. |.|++|+..+.
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~--------~KP-I~~~~~~H~SN---IF~L~F~~~N~- 118 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT--------PKP-IGVMEHPHRSN---IFSLEFDLENR- 118 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC--------CCC-ceeccCccccc---eEEEEEccCCe-
Confidence 445666799999999999999999999999999876322221 011 11122 4455 99999998764
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-c
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-S 248 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~ 248 (489)
.+.+|..+ ++|.+-|+... +.+.-.. -....+.|+.+..+|.++ .|++.+.++.|.+||.+....+ .
T Consensus 119 ~~~SG~~~-~~VI~HDiEt~-----qsi~V~~-----~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~ 186 (609)
T KOG4227|consen 119 FLYSGERW-GTVIKHDIETK-----QSIYVAN-----ENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPIS 186 (609)
T ss_pred eEecCCCc-ceeEeeecccc-----eeeeeec-----ccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCc
Confidence 88888888 99999999322 2221111 133456999999999977 9999999999999999976544 1
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEE-eCCCeEEEEEcCCCcc-cceeecCCccC--CCCeeEEEeCCCCcceeeccccc
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAA-GKHGSIYLWDLRGGRT-SAPFHNHKEVC--HLPLTSLKLASMLEKIGTLKAQS 324 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~-~~dg~i~lwd~~~~~~-~~~~~~~~~~~--~~~v~~l~~~~~~~~i~~~~~~~ 324 (489)
............++.|+|..+.|++. +..+-+.+||.+.... +....+..+.. ...-.++.|+|.|..+.++....
T Consensus 187 ~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~ 266 (609)
T KOG4227|consen 187 LVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGK 266 (609)
T ss_pred eeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccC
Confidence 21223334567899999987655554 5588899999998654 33222111110 01146788999997776544221
Q ss_pred eeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecC
Q 037120 325 KIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSS 404 (489)
Q Consensus 325 ~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~ 404 (489)
. +++ ..|. ..++.++..|..-.+..+. ..-...+|.. ...+++||.
T Consensus 267 ~----P~~-~D~~--S~R~~V~k~D~N~~GY~N~-------~T~KS~~F~~--------------------D~~v~tGSD 312 (609)
T KOG4227|consen 267 C----PLY-FDFI--SQRCFVLKSDHNPNGYCNI-------KTIKSMTFID--------------------DYTVATGSD 312 (609)
T ss_pred C----CEE-eeee--cccceeEeccCCCCcceee-------eeeeeeeeec--------------------ceeeeccCc
Confidence 1 111 1111 1111222112110000000 0000012222 344889999
Q ss_pred CCcEEEEeccCCCCCC--eeeccC--cccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 405 DHGIHLLDFFPGSSSP--SHVDYN--EDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 405 d~~i~vwd~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
+-.|++|.+.....+- ..+..+ +....+-. ......+.||...++.|-|+|...+|++.|....+++|+.-+.
T Consensus 313 ~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i---~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r~ 389 (609)
T KOG4227|consen 313 HWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFI---EKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHRL 389 (609)
T ss_pred ccceEEEecCCCccccCccccCcchhhCchhhee---cceeEEEecccccccceeecCCcceEeccchhhheeccccccC
Confidence 9999999987552111 001110 00000000 0000112499999999999999999999999999999998665
Q ss_pred c
Q 037120 481 C 481 (489)
Q Consensus 481 ~ 481 (489)
.
T Consensus 390 P 390 (609)
T KOG4227|consen 390 P 390 (609)
T ss_pred C
Confidence 3
No 142
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.83 E-value=5.2e-18 Score=159.34 Aligned_cols=267 Identities=11% Similarity=0.063 Sum_probs=163.0
Q ss_pred CceeEEEECCCCcEE-EEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 97 PGISALDFDCKGIYL-VSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 97 ~~V~~~~fs~~g~~l-a~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
..+.+++|+|+|..+ ++++.++.|++||..+.+.... + ..+. . +..++|+|++..+++++.
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~--------~------~~~~-~---~~~~~~~~~g~~l~~~~~ 92 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT--------L------PSGP-D---PELFALHPNGKILYIANE 92 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe--------c------cCCC-C---ccEEEECCCCCEEEEEcC
Confidence 346789999999876 6677899999999987443321 1 1111 1 456899999875555555
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC-cEEEEECCCCCcCceeeccC
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG-VVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~ 254 (489)
.+ +.|++||+... ..+... . +...+.+++|+|++. .+++++.++ .+.+||.++++ ......
T Consensus 93 ~~-~~l~~~d~~~~-----~~~~~~-------~-~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~--~~~~~~- 154 (300)
T TIGR03866 93 DD-NLVTVIDIETR-----KVLAEI-------P-VGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYE--IVDNVL- 154 (300)
T ss_pred CC-CeEEEEECCCC-----eEEeEe-------e-CCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCe--EEEEEE-
Confidence 56 99999999432 111111 1 123467899999999 888777664 57788988765 332221
Q ss_pred CCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeE
Q 037120 255 SHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHS 333 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~ 333 (489)
......+++|+|+++.+++++. ++.|++||+++++.+..+..+... +. + .......
T Consensus 155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~----~~-----~--------------~~~~~~~ 211 (300)
T TIGR03866 155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPG----VH-----P--------------EAVQPVG 211 (300)
T ss_pred cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccc----cc-----c--------------ccCCccc
Confidence 2334678999999998876654 999999999998765555422111 00 0 0000123
Q ss_pred EEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEec
Q 037120 334 IDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDF 413 (489)
Q Consensus 334 ~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~ 413 (489)
+.++|+++++++...++....+++..++.+...... . .....++|.|++..++++++.++.|+|||+
T Consensus 212 i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~------~-------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 212 IKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV------G-------QRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred eEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe------C-------CCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 445555554433322222122333333322211100 0 012346788887777766678999999999
Q ss_pred cCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeC
Q 037120 414 FPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHP 458 (489)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p 458 (489)
.++ +.+..++ . ....++++++|
T Consensus 279 ~~~----------~~~~~~~------------~-~~~~~~~~~~~ 300 (300)
T TIGR03866 279 AAL----------KVIKSIK------------V-GRLPWGVVVRP 300 (300)
T ss_pred CCC----------cEEEEEE------------c-ccccceeEeCC
Confidence 998 7766665 2 34558888776
No 143
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=7.4e-19 Score=156.15 Aligned_cols=153 Identities=14% Similarity=0.178 Sum_probs=125.6
Q ss_pred cccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEE
Q 037120 148 HLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRL 227 (489)
Q Consensus 148 ~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 227 (489)
..||+.. |..++|+|.+.+.+++|++| .+|.||++... ............|.+|...|.-++|+|.-.+.|
T Consensus 77 v~GHt~~---vLDi~w~PfnD~vIASgSeD-~~v~vW~IPe~-----~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVL 147 (472)
T KOG0303|consen 77 VCGHTAP---VLDIDWCPFNDCVIASGSED-TKVMVWQIPEN-----GLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVL 147 (472)
T ss_pred ccCcccc---ccccccCccCCceeecCCCC-ceEEEEECCCc-----ccccCcccceEEEeecceeEEEEeecccchhhH
Confidence 4678888 77799999999999999999 99999999432 122223334555799999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeE
Q 037120 228 IASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTS 307 (489)
Q Consensus 228 ~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 307 (489)
++++.|.+|.+||+.+++ .+-.+ .|.+-|.++.|+.+|.++++++.|..|||||.++++.+..-.+|.+. .+...
T Consensus 148 lsag~Dn~v~iWnv~tge--ali~l-~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~--k~~Ra 222 (472)
T KOG0303|consen 148 LSAGSDNTVSIWNVGTGE--ALITL-DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA--KPARA 222 (472)
T ss_pred hhccCCceEEEEeccCCc--eeeec-CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC--Cccee
Confidence 999999999999999987 33233 49999999999999999999999999999999999998887888876 33333
Q ss_pred EEeCCCCc
Q 037120 308 LKLASMLE 315 (489)
Q Consensus 308 l~~~~~~~ 315 (489)
-|-.+|.
T Consensus 223 -ifl~~g~ 229 (472)
T KOG0303|consen 223 -IFLASGK 229 (472)
T ss_pred -EEeccCc
Confidence 3444544
No 144
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=3.9e-19 Score=153.55 Aligned_cols=264 Identities=14% Similarity=0.223 Sum_probs=178.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccC-----------------CCCCC-CC--------Ccccc
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCN-----------------GTLPG-VG--------LKEDQ 145 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~-----------------~~~~~-~g--------~~~~~ 145 (489)
+..|...|+||+|++.+.++++++.|++-+||...-.-..+. +-.+. .| .-.+.
T Consensus 186 Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl 265 (481)
T KOG0300|consen 186 YTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPL 265 (481)
T ss_pred ecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeee
Confidence 566777799999999999999999999999997321100000 00000 00 01123
Q ss_pred cccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCc
Q 037120 146 SKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTS 225 (489)
Q Consensus 146 ~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 225 (489)
..+++|... |.+..|-..++ .+++++.| .+..+||+..+ . .+..+.||....+.++-+|...
T Consensus 266 ~~ltgH~~v---V~a~dWL~gg~-Q~vTaSWD-RTAnlwDVEtg-----e-------~v~~LtGHd~ELtHcstHptQr- 327 (481)
T KOG0300|consen 266 MRLTGHRAV---VSACDWLAGGQ-QMVTASWD-RTANLWDVETG-----E-------VVNILTGHDSELTHCSTHPTQR- 327 (481)
T ss_pred eeeeccccc---eEehhhhcCcc-eeeeeecc-ccceeeeeccC-----c-------eeccccCcchhccccccCCcce-
Confidence 345667776 88899998876 78888888 99999999432 1 2344589999999999999998
Q ss_pred EEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCC
Q 037120 226 RLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLP 304 (489)
Q Consensus 226 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~ 304 (489)
++++++.|.+.++||++. ..+.+..+.+|...|+++.|+-+.+ +++|+.|.+|++||+++.+. +.++.. .. +
T Consensus 328 LVvTsSrDtTFRLWDFRe-aI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRt-dS----~ 400 (481)
T KOG0300|consen 328 LVVTSSRDTTFRLWDFRE-AIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRT-DS----P 400 (481)
T ss_pred EEEEeccCceeEeccchh-hcceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeec-CC----c
Confidence 999999999999999994 3445667889999999999987655 68999999999999999765 666654 22 3
Q ss_pred eeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCce-EE-EEeeccceeeecCCCCCCcCCCCcccc
Q 037120 305 LTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWS-GV-LDVYNSRVSHVHCPPPAWLSDSNNSAD 382 (489)
Q Consensus 305 v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (489)
++.++.+..+..|+- --+.+.+-.+.+.+.-- ++ ..-..||..-+.|. +|.....
T Consensus 401 ~NRvavs~g~~iIAi-----------------PhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~--AW~eehp---- 457 (481)
T KOG0300|consen 401 ANRVAVSKGHPIIAI-----------------PHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCC--AWLEEHP---- 457 (481)
T ss_pred cceeEeecCCceEEe-----------------ccCCceEEEEecCCCccccCCcccccccceeeeee--eccccCc----
Confidence 777776655544431 11222222232222210 00 01123444444454 5655521
Q ss_pred ccCCCcceeecCCcEEEEeecCCCcEEEEeccCC
Q 037120 383 QLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPG 416 (489)
Q Consensus 383 ~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~ 416 (489)
-.-+.+++-|..+.=|.+...
T Consensus 458 -------------~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 458 -------------ACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred -------------ccccccccccceeeeeEeccc
Confidence 223667889999999998764
No 145
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.82 E-value=1.5e-19 Score=161.32 Aligned_cols=244 Identities=16% Similarity=0.253 Sum_probs=172.5
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+.+...+|+.++|++++.++++++.|+.+++|++...+... .+.||+.. |+++.|..... .+
T Consensus 215 LaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~--------------TLsGHtdk---Vt~ak~~~~~~-~v 276 (459)
T KOG0288|consen 215 LAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH--------------TLSGHTDK---VTAAKFKLSHS-RV 276 (459)
T ss_pred hhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhh--------------hhcccccc---eeeehhhcccc-ce
Confidence 34445569999999999999999999999999999844443 23678887 99999988764 48
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++|+.| .+|++||+...- . .+.+ -....+++|... .. .+++|-.|+.|++||+++.. +...
T Consensus 277 Vsgs~D-RtiK~WDl~k~~-----C---~kt~-----l~~S~cnDI~~~--~~-~~~SgH~DkkvRfwD~Rs~~--~~~s 337 (459)
T KOG0288|consen 277 VSGSAD-RTIKLWDLQKAY-----C---SKTV-----LPGSQCNDIVCS--IS-DVISGHFDKKVRFWDIRSAD--KTRS 337 (459)
T ss_pred eecccc-chhhhhhhhhhh-----e---eccc-----cccccccceEec--ce-eeeecccccceEEEeccCCc--eeeE
Confidence 899998 999999994321 1 1111 011355666655 33 68888899999999999877 4444
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
...+ +.|+++..++++..+++.+.|.++.+.|+++......+.... -. .....
T Consensus 338 v~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g----------------~k----------~asDw 390 (459)
T KOG0288|consen 338 VPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEG----------------FK----------CASDW 390 (459)
T ss_pred eecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccc----------------cc----------ccccc
Confidence 4444 589999999999999999999999999999876555544321 11 11224
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
+.+.|||++.|+++++.++. ..+|++.++....+.+.+.+-. .+...+|.|. |.++++++.++.+.+|
T Consensus 391 trvvfSpd~~YvaAGS~dgs-v~iW~v~tgKlE~~l~~s~s~~----------aI~s~~W~~s-G~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSADGS-VYIWSVFTGKLEKVLSLSTSNA----------AITSLSWNPS-GSGLLSADKQKAVTLW 458 (459)
T ss_pred ceeEECCCCceeeeccCCCc-EEEEEccCceEEEEeccCCCCc----------ceEEEEEcCC-CchhhcccCCcceEec
Confidence 66778888888888877765 2355566666555444321110 1233566665 5667777889999998
No 146
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=1.7e-19 Score=159.34 Aligned_cols=170 Identities=18% Similarity=0.228 Sum_probs=132.8
Q ss_pred cccCCCceeEEEECCCC-cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCKG-IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g-~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..|...=.+|+|||-- -.|++|..-+.|++|...++.-. .....+.+|+.. |-.++|+|....+
T Consensus 207 ~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~-----------vd~~Pf~gH~~S---VEDLqWSptE~~v 272 (440)
T KOG0302|consen 207 FNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK-----------VDQRPFTGHTKS---VEDLQWSPTEDGV 272 (440)
T ss_pred ecccCccceeeecccccccccccCccccceEeeeeccCcee-----------ecCccccccccc---hhhhccCCccCce
Confidence 44455557899999942 24788888889999988773221 122345678888 6669999999999
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-ce
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SL 249 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~ 249 (489)
|++++-| |+|+|||++....++ .+. ...|...|+-|.|+..-+ +|++|+.||+++|||+|+-+.. .+
T Consensus 273 faScS~D-gsIrIWDiRs~~~~~--~~~--------~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pV 340 (440)
T KOG0302|consen 273 FASCSCD-GSIRIWDIRSGPKKA--AVS--------TKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPV 340 (440)
T ss_pred EEeeecC-ceEEEEEecCCCccc--eeE--------eeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcc
Confidence 9999999 999999998764432 111 156888999999999988 9999999999999999975432 45
Q ss_pred eeccCCCCceeEEEEeecCCE-EEEEeCCCeEEEEEcCC
Q 037120 250 ELSTGSHGTLNSIQLHAENQI-IFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~-l~~~~~dg~i~lwd~~~ 287 (489)
..+..|..+|+|+.|+|.... ++++|.|.+|.|||+..
T Consensus 341 A~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 341 ATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 578899999999999997654 55556699999999975
No 147
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=1.1e-18 Score=149.33 Aligned_cols=225 Identities=12% Similarity=0.126 Sum_probs=160.5
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCC--ceeeeece-eeeeecCCcccCeeEEEEecCCCcEEEEEeCCC
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEP--VEVLKTRR-SVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG 234 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~--~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg 234 (489)
|.++...+.....+++|+.| |.|.+||+....... ..+.+..- .-...-.+|.-.|.++.|.|-+..+|.+++.|.
T Consensus 46 vNsL~id~tegrymlSGgad-gsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDh 124 (397)
T KOG4283|consen 46 VNSLQIDLTEGRYMLSGGAD-GSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDH 124 (397)
T ss_pred cceeeeccccceEEeecCCC-ccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccc
Confidence 88899988877788888888 999999996433111 01111000 001112679999999999998887999999999
Q ss_pred cEEEEECCCCCcCceeeccCCCCceeEEEEeecC--C-EEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeC
Q 037120 235 VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAEN--Q-IIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~--~-~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~ 311 (489)
++++||.++.+.... + .-++.|.+-+++|-. . ++++|..|-.|++-|+.+|...+++.+|.+. |.++.|+
T Consensus 125 tlKVWDtnTlQ~a~~--F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~----vlaV~Ws 197 (397)
T KOG4283|consen 125 TLKVWDTNTLQEAVD--F-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG----VLAVEWS 197 (397)
T ss_pred eEEEeecccceeeEE--e-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc----eEEEEec
Confidence 999999998653322 2 225778888888843 3 4445555889999999999999999999877 7777666
Q ss_pred CCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCccee
Q 037120 312 SMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSW 391 (489)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (489)
|..
T Consensus 198 p~~----------------------------------------------------------------------------- 200 (397)
T KOG4283|consen 198 PSS----------------------------------------------------------------------------- 200 (397)
T ss_pred cCc-----------------------------------------------------------------------------
Confidence 531
Q ss_pred ecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCC-cccCCCceEEEEeeCCCCeEEeccCcc
Q 037120 392 LSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENR-FVPLSEGVTACVTHPLNNTIVAGTKNS 470 (489)
Q Consensus 392 ~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~va~~p~~~~i~sgs~dg 470 (489)
...|++||.||.|++||+... +.|..-.++.... .++... -..|.+.|+++||..++.++++++.|.
T Consensus 201 ----e~vLatgsaDg~irlWDiRra--sgcf~~lD~hn~k------~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 201 ----EWVLATGSADGAIRLWDIRRA--SGCFRVLDQHNTK------RPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred ----eeEEEecCCCceEEEEEeecc--cceeEEeecccCc------cCccccccccccceeeeeeecccchhhhhccCcc
Confidence 456788999999999999854 3333222211100 000000 127999999999999999999999999
Q ss_pred eeEEEeccc
Q 037120 471 SLLVVSQKQ 479 (489)
Q Consensus 471 ~i~v~~~~~ 479 (489)
.+++|--++
T Consensus 269 r~r~wn~~~ 277 (397)
T KOG4283|consen 269 RIRVWNMES 277 (397)
T ss_pred ceEEeeccc
Confidence 999996544
No 148
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.4e-18 Score=148.81 Aligned_cols=268 Identities=15% Similarity=0.134 Sum_probs=174.7
Q ss_pred cccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEE
Q 037120 148 HLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRL 227 (489)
Q Consensus 148 ~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 227 (489)
+.+|..+ |++++|+.+|. .|++++.| ++|+||+++....+..+.+...-. .+ --+.+.|.||....+
T Consensus 82 LKgH~~~---vt~~~FsSdGK-~lat~~~D-r~Ir~w~~~DF~~~eHr~~R~nve-----~d---hpT~V~FapDc~s~v 148 (420)
T KOG2096|consen 82 LKGHKKE---VTDVAFSSDGK-KLATISGD-RSIRLWDVRDFENKEHRCIRQNVE-----YD---HPTRVVFAPDCKSVV 148 (420)
T ss_pred hhccCCc---eeeeEEcCCCc-eeEEEeCC-ceEEEEecchhhhhhhhHhhcccc-----CC---CceEEEECCCcceEE
Confidence 4667777 99999999997 67777777 999999997654333222222111 22 346789999999888
Q ss_pred EEEeCCCcEEEEECCCCCc---C--c-----eeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecC
Q 037120 228 IASDTHGVVNIWDRRVGVL---P--S-----LELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNH 297 (489)
Q Consensus 228 ~s~s~dg~i~iwd~~~~~~---~--~-----~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 297 (489)
+++-...++++|-+...+. + . .....-|...+..+-..-++.++++++.|..|.|||++ |+.+..+...
T Consensus 149 v~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn 227 (420)
T KOG2096|consen 149 VSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN 227 (420)
T ss_pred EEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc
Confidence 8888888999997653211 1 1 11223566677778888889999999999999999999 8888888766
Q ss_pred CccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEE--EeeccceeeecCCCCCCcC
Q 037120 298 KEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVL--DVYNSRVSHVHCPPPAWLS 375 (489)
Q Consensus 298 ~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~--~~~~~~~~~~~~~~~~~~~ 375 (489)
+.. -...+.+|+|++++.... ...-.|+.+.|..+|. ...+. -...||...++.. +|++
T Consensus 228 q~~----n~~aavSP~GRFia~~gF---TpDVkVwE~~f~kdG~----------fqev~rvf~LkGH~saV~~~--aFsn 288 (420)
T KOG2096|consen 228 QSS----NYDAAVSPDGRFIAVSGF---TPDVKVWEPIFTKDGT----------FQEVKRVFSLKGHQSAVLAA--AFSN 288 (420)
T ss_pred ccc----ccceeeCCCCcEEEEecC---CCCceEEEEEeccCcc----------hhhhhhhheeccchhheeee--eeCC
Confidence 655 677888999988864221 1122344444444443 22122 2335777666554 6666
Q ss_pred CCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEE
Q 037120 376 DSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACV 455 (489)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va 455 (489)
+ +..+++.|.||+++|||..-.-.. + +....+.. ...+....-.++ .-++
T Consensus 289 ~-------------------S~r~vtvSkDG~wriwdtdVrY~~----~--qDpk~Lk~----g~~pl~aag~~p-~RL~ 338 (420)
T KOG2096|consen 289 S-------------------STRAVTVSKDGKWRIWDTDVRYEA----G--QDPKILKE----GSAPLHAAGSEP-VRLE 338 (420)
T ss_pred C-------------------cceeEEEecCCcEEEeeccceEec----C--CCchHhhc----CCcchhhcCCCc-eEEE
Confidence 6 778999999999999998654000 0 11111110 000000112233 4799
Q ss_pred eeCCCCeEEeccCcceeEEEeccc
Q 037120 456 THPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 456 ~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
.+|.+..+|.+.. .+|.+|..+.
T Consensus 339 lsP~g~~lA~s~g-s~l~~~~se~ 361 (420)
T KOG2096|consen 339 LSPSGDSLAVSFG-SDLKVFASED 361 (420)
T ss_pred eCCCCcEEEeecC-CceEEEEccc
Confidence 9999998777654 7788877665
No 149
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.81 E-value=1.4e-18 Score=158.87 Aligned_cols=185 Identities=15% Similarity=0.144 Sum_probs=138.9
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
+-|+++...|||+.|++|+.-.++.|||+......-+ . .. +.....+.+++.+||.+..+++++
T Consensus 466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprik----------a----el-tssapaCyALa~spDakvcFsccs- 529 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIK----------A----EL-TSSAPACYALAISPDAKVCFSCCS- 529 (705)
T ss_pred cceeeeEecCCCceEEeccccceeeeeeccCCCcchh----------h----hc-CCcchhhhhhhcCCccceeeeecc-
Confidence 4499999999999999999999999999987222111 0 00 111112677999999875555555
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
| |.|.|||+. .+..+.+|.||++.+.+|..+++|. .|.||+-|++|+.||+|++.+..-. ...
T Consensus 530 d-GnI~vwDLh------------nq~~VrqfqGhtDGascIdis~dGt-klWTGGlDntvRcWDlregrqlqqh---dF~ 592 (705)
T KOG0639|consen 530 D-GNIAVWDLH------------NQTLVRQFQGHTDGASCIDISKDGT-KLWTGGLDNTVRCWDLREGRQLQQH---DFS 592 (705)
T ss_pred C-CcEEEEEcc------------cceeeecccCCCCCceeEEecCCCc-eeecCCCccceeehhhhhhhhhhhh---hhh
Confidence 4 999999993 2223445699999999999999999 9999999999999999998644221 235
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceee
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
+.|.++-.+|++..+++|-..+.+-|......+ .+.+..|+.. |-+|.|.+-|+.+++
T Consensus 593 SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheSc----VLSlKFa~cGkwfvS 650 (705)
T KOG0639|consen 593 SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESC----VLSLKFAYCGKWFVS 650 (705)
T ss_pred hhheecccCCCccceeeecccCcEEEEecCCcc-ceeecccccE----EEEEEecccCceeee
Confidence 789999999999999999999988888766432 4555556655 777777776666654
No 150
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=4.2e-18 Score=148.82 Aligned_cols=173 Identities=13% Similarity=0.168 Sum_probs=120.8
Q ss_pred cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC-CCCEEEEEecCCCEEEEEEec
Q 037120 109 IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA-NQDEVACASTRSNVVSIYDIG 187 (489)
Q Consensus 109 ~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~-~~~~l~s~~~d~g~i~vwd~~ 187 (489)
..+|++-..|.|++||..++.... ++.++... +..++|... +.+.+.+++.| |+|++||++
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~--------------~fk~~~~~---~N~vrf~~~ds~h~v~s~ssD-G~Vr~wD~R 102 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLE--------------EFKGPPAT---TNGVRFISCDSPHGVISCSSD-GTVRLWDIR 102 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhh--------------eecCCCCc---ccceEEecCCCCCeeEEeccC-CeEEEEEee
Confidence 578999999999999999844433 12444444 445888653 56678888888 999999997
Q ss_pred cCCCCCceeeeeceeeeeecCCcc-cCeeEEEEecCCCcEEEEEe----CCCcEEEEECCCCCcCceeeccCCCCceeEE
Q 037120 188 YISDEPVEVLKTRRSVTVVGSDVQ-KGLSDLAFSAVNTSRLIASD----THGVVNIWDRRVGVLPSLELSTGSHGTLNSI 262 (489)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~s----~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~ 262 (489)
.....+... + .+|. .+..+++..-.+. ++++|. .|-.|.+||+|..+++.-.....|.+.|+++
T Consensus 103 s~~e~a~~~------~----~~~~~~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~l 171 (376)
T KOG1188|consen 103 SQAESARIS------W----TQQSGTPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQL 171 (376)
T ss_pred cchhhhhee------c----cCCCCCcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeE
Confidence 654432111 1 3333 4566666554555 677665 5678999999997765444566999999999
Q ss_pred EEeecCC-EEEEEeCCCeEEEEEcCCCcc---cceeecCCccCCCCeeEEEeCCCC
Q 037120 263 QLHAENQ-IIFAAGKHGSIYLWDLRGGRT---SAPFHNHKEVCHLPLTSLKLASML 314 (489)
Q Consensus 263 ~~~p~~~-~l~~~~~dg~i~lwd~~~~~~---~~~~~~~~~~~~~~v~~l~~~~~~ 314 (489)
.|+|..+ .|++|+.||.|.|||+..... +...-.+... |..+.|..++
T Consensus 172 rFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sS----I~~igw~~~~ 223 (376)
T KOG1188|consen 172 RFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSS----IHLIGWLSKK 223 (376)
T ss_pred EecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccce----eeeeeeecCC
Confidence 9999765 566666799999999987543 2222233444 7888888776
No 151
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=3.5e-17 Score=155.36 Aligned_cols=334 Identities=11% Similarity=0.123 Sum_probs=218.9
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
.|+.=|.++.|+|.+..|++++.|.++.||.-.+..- .......+-.-.+...+....-|+|++. .+++
T Consensus 265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tG----------iWv~~vRlGe~gg~a~GF~g~lw~~n~~-~ii~ 333 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTG----------IWVDVVRLGEVGGSAGGFWGGLWSPNSN-VIIA 333 (764)
T ss_pred CcccceEEEEEccchhhheecccCcceEEEecCCccc----------eEEEEEEeecccccccceeeEEEcCCCC-EEEE
Confidence 4666699999999999999999999999998776211 1111111100011222366699999985 6666
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC--ceee
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP--SLEL 251 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~ 251 (489)
-+.. |..++|.. +........... .||.+.|++++|.|.|. +|++.|.|.+-|++---..+.. .+..
T Consensus 334 ~g~~-Gg~hlWkt-----~d~~~w~~~~~i----SGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaR 402 (764)
T KOG1063|consen 334 HGRT-GGFHLWKT-----KDKTFWTQEPVI----SGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIAR 402 (764)
T ss_pred eccc-CcEEEEec-----cCccceeecccc----ccccccceeeeecCCCC-EEEEeccccceeeecccccccceeeecc
Confidence 6666 99999983 111112222222 89999999999999999 9999999999999854421111 2233
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-------------------------------------------
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGG------------------------------------------- 288 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~------------------------------------------- 288 (489)
..-|.-.++|++|-+....+++|.....+|+|+....
T Consensus 403 PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G 482 (764)
T KOG1063|consen 403 PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTG 482 (764)
T ss_pred cccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccc
Confidence 4467788999999886566677777889999974210
Q ss_pred cc---------------------------------cceeecCCccCCCCeeEEEeCCCCcceeec-c-------------
Q 037120 289 RT---------------------------------SAPFHNHKEVCHLPLTSLKLASMLEKIGTL-K------------- 321 (489)
Q Consensus 289 ~~---------------------------------~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~-~------------- 321 (489)
.. ++.+.+|.-. |.+++.+|++..+++. +
T Consensus 483 ~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyE----v~~l~~s~~gnliASaCKS~~~ehAvI~lw~ 558 (764)
T KOG1063|consen 483 GEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYE----VYALAISPTGNLIASACKSSLKEHAVIRLWN 558 (764)
T ss_pred cccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCcee----EEEEEecCCCCEEeehhhhCCccceEEEEEe
Confidence 00 0113344444 8999999999998552 1
Q ss_pred -------ccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecC
Q 037120 322 -------AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLST 394 (489)
Q Consensus 322 -------~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (489)
.....|+-.|+.+.|+||++++++.+.|..|+ ++........... |.. ...+.+-+..-+|+|+
T Consensus 559 t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~s-l~~~~~~~~~e~~-----fa~---~k~HtRIIWdcsW~pd 629 (764)
T KOG1063|consen 559 TANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVS-LYEVQEDIKDEFR-----FAC---LKAHTRIIWDCSWSPD 629 (764)
T ss_pred ccchhhhheecccceEEEEEEECCCCcEEEEeecCceEE-eeeeecccchhhh-----hcc---ccccceEEEEcccCcc
Confidence 12334566799999999999999999998875 2222111111000 000 0011111122344555
Q ss_pred CcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC-----eEEeccCc
Q 037120 395 NSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN-----TIVAGTKN 469 (489)
Q Consensus 395 ~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~-----~i~sgs~d 469 (489)
+.+++|+|.|..|+||...... ++.+..+ ..+.+...|++++++|... .++.|-+.
T Consensus 630 -e~~FaTaSRDK~VkVW~~~~~~--------d~~i~~~----------a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~ 690 (764)
T KOG1063|consen 630 -EKYFATASRDKKVKVWEEPDLR--------DKYISRF----------ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEK 690 (764)
T ss_pred -cceeEEecCCceEEEEeccCch--------hhhhhhh----------chhccCCceeeEEeeccccccccceEEEEecc
Confidence 6779999999999999987661 0111111 1126899999999998542 67899999
Q ss_pred ceeEEEeccccc
Q 037120 470 SSLLVVSQKQQC 481 (489)
Q Consensus 470 g~i~v~~~~~~~ 481 (489)
|.|.||..+++.
T Consensus 691 GeI~l~~~~~~~ 702 (764)
T KOG1063|consen 691 GEIVLWRRKREH 702 (764)
T ss_pred cEEEEEeccccc
Confidence 999999987554
No 152
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.81 E-value=1.2e-18 Score=165.17 Aligned_cols=233 Identities=13% Similarity=0.172 Sum_probs=174.1
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeE-EEEecCCCcEE
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSD-LAFSAVNTSRL 227 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l 227 (489)
.+|... |..++..+.. .+++++.| |++++|+-... .... .+.+.+|.+-|.. +++.+..+-.+
T Consensus 11 ~gH~~D---Vr~v~~~~~~--~i~s~sRd-~t~~vw~~~~~------~~l~----~~~~~~~~g~i~~~i~y~e~~~~~l 74 (745)
T KOG0301|consen 11 EGHKSD---VRAVAVTDGV--CIISGSRD-GTVKVWAKKGK------QYLE----THAFEGPKGFIANSICYAESDKGRL 74 (745)
T ss_pred ccCccc---hheeEecCCe--EEeecCCC-CceeeeeccCc------cccc----ceecccCcceeeccceeccccCcce
Confidence 567776 7778877653 78888888 99999997322 1111 1223667777777 88876444369
Q ss_pred EEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeE
Q 037120 228 IASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTS 307 (489)
Q Consensus 228 ~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 307 (489)
++|+.|.+|.+|...+.. .+.++.+|+..|.|+....++. +++|+.|.++++|-. +++...+++|+.+ |.+
T Consensus 75 ~~g~~D~~i~v~~~~~~~--P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~as----VWA 145 (745)
T KOG0301|consen 75 VVGGMDTTIIVFKLSQAE--PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTAS----VWA 145 (745)
T ss_pred EeecccceEEEEecCCCC--chhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchh----eee
Confidence 999999999999988766 6778889999999999888887 899999999999965 4667789999977 888
Q ss_pred EEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCC---ce--EEEEeeccceeeecCCCCCCcCCCCcccc
Q 037120 308 LKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDG---WS--GVLDVYNSRVSHVHCPPPAWLSDSNNSAD 382 (489)
Q Consensus 308 l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~---w~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (489)
++.-|++.++ +++.|.. |. .+++++.||..-+
T Consensus 146 v~~l~e~~~v---------------------------TgsaDKtIklWk~~~~l~tf~gHtD~V---------------- 182 (745)
T KOG0301|consen 146 VASLPENTYV---------------------------TGSADKTIKLWKGGTLLKTFSGHTDCV---------------- 182 (745)
T ss_pred eeecCCCcEE---------------------------eccCcceeeeccCCchhhhhccchhhe----------------
Confidence 8877766433 2222222 32 4555555554332
Q ss_pred ccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCe
Q 037120 383 QLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNT 462 (489)
Q Consensus 383 ~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~ 462 (489)
|.++.++++ -+++++.||.|++|++ ++ +.+.+.. ||..-|.+++..+++..
T Consensus 183 ----RgL~vl~~~--~flScsNDg~Ir~w~~-~g----------e~l~~~~------------ghtn~vYsis~~~~~~~ 233 (745)
T KOG0301|consen 183 ----RGLAVLDDS--HFLSCSNDGSIRLWDL-DG----------EVLLEMH------------GHTNFVYSISMALSDGL 233 (745)
T ss_pred ----eeeEEecCC--CeEeecCCceEEEEec-cC----------ceeeeee------------ccceEEEEEEecCCCCe
Confidence 333333332 4678899999999999 56 6777777 99999999998888889
Q ss_pred EEeccCcceeEEEecc
Q 037120 463 IVAGTKNSSLLVVSQK 478 (489)
Q Consensus 463 i~sgs~dg~i~v~~~~ 478 (489)
|+|+|+|+++++|..+
T Consensus 234 Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 234 IVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEEecCCceEEEeecC
Confidence 9999999999999887
No 153
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.2e-16 Score=151.47 Aligned_cols=328 Identities=13% Similarity=0.137 Sum_probs=201.9
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..|.+++.+|.+..++.|+.||.+..++.......... .+ .-.++. |.+++|+|++. .+++|+.
T Consensus 111 g~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r------~l------~rq~sR---vLslsw~~~~~-~i~~Gs~ 174 (691)
T KOG2048|consen 111 GAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR------SL------MRQKSR---VLSLSWNPTGT-KIAGGSI 174 (691)
T ss_pred cceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe------ec------ccccce---EEEEEecCCcc-EEEeccc
Confidence 45999999999999999999998888887774443321 11 112233 99999999985 6888888
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecC-CcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGS-DVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
| |.|++||+..+. .+.....-...+. +-..-|+++.|-.++ .|++|...|+|.+||...+. .++....|
T Consensus 175 D-g~Iriwd~~~~~-----t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gT--LiqS~~~h 244 (691)
T KOG2048|consen 175 D-GVIRIWDVKSGQ-----TLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGT--LIQSHSCH 244 (691)
T ss_pred C-ceEEEEEcCCCc-----eEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcc--hhhhhhhh
Confidence 8 999999995432 2111110011111 134468899988766 59999999999999999987 67777899
Q ss_pred CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc----cceeecCCccCCCCeeEEEeCCCC-----cce---------
Q 037120 256 HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT----SAPFHNHKEVCHLPLTSLKLASML-----EKI--------- 317 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~----~~~~~~~~~~~~~~v~~l~~~~~~-----~~i--------- 317 (489)
...|.|++.+++++.++++|-|+.|..|-..+.+. ......|... |.+++..++- .-.
T Consensus 245 ~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hd----vrs~av~~~~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 245 DADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHD----VRSMAVIENALISGGRDFTLAICSSRE 320 (691)
T ss_pred hcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCccc----ceeeeeecceEEecceeeEEEEccccc
Confidence 99999999999999999999999999988776543 1122233333 6666655441 000
Q ss_pred ----------------------------------------eecccc-----------ceeeccceeEEEeCCCCCeEEEE
Q 037120 318 ----------------------------------------GTLKAQ-----------SKIVSQEIHSIDLDPSCSYQLAF 346 (489)
Q Consensus 318 ----------------------------------------~~~~~~-----------~~~~~~~i~~~~~~p~~~~~~~~ 346 (489)
++...+ ......-|.+.+.+|+|..++..
T Consensus 321 ~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~s 400 (691)
T KOG2048|consen 321 FKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAIS 400 (691)
T ss_pred cCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEe
Confidence 000000 00002234555566666655554
Q ss_pred EecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccC
Q 037120 347 HLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYN 426 (489)
Q Consensus 347 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~ 426 (489)
+.... .+..+.-.+...+... .......+......|.-++..+++..-.+..+.+.++.+...
T Consensus 401 t~~~~--~iy~L~~~~~vk~~~v-------~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~-------- 463 (691)
T KOG2048|consen 401 TVSRT--KIYRLQPDPNVKVINV-------DDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSF-------- 463 (691)
T ss_pred eccce--EEEEeccCcceeEEEe-------ccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcch--------
Confidence 43221 0111000000000000 000001112234555556666666544666777777765510
Q ss_pred cccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccccc
Q 037120 427 EDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~ 481 (489)
+.+..+. + .+-.+.|..++.+|+|++||+.+..|.|.+|.-|...
T Consensus 464 kel~~~~-----~-----~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~ 508 (691)
T KOG2048|consen 464 KELKSIQ-----S-----QAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLE 508 (691)
T ss_pred hhhhccc-----c-----ccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccce
Confidence 1111111 0 1456789999999999999999999999999877643
No 154
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=4.2e-18 Score=154.63 Aligned_cols=196 Identities=12% Similarity=0.198 Sum_probs=149.8
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC-CCCE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA-NQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~-~~~~ 170 (489)
+..|-+.|+|+.|+-||.+|++|+.||.|.+|.+......... +...+...|..|+-. |+++...+. ....
T Consensus 119 ~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~-----~~~~p~~~f~~Htls---ITDl~ig~Gg~~~r 190 (476)
T KOG0646|consen 119 LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND-----HSVKPLHIFSDHTLS---ITDLQIGSGGTNAR 190 (476)
T ss_pred HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC-----CCccceeeeccCcce---eEEEEecCCCccce
Confidence 4567778999999999999999999999999998763222211 123444445556666 888988765 2347
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCC-----
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGV----- 245 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~----- 245 (489)
+++++.| .++++||+..+ ..+.... -...+.+++..|.+. .++.|+.+|.|.+.++....
T Consensus 191 l~TaS~D-~t~k~wdlS~g-----~LLlti~--------fp~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~ 255 (476)
T KOG0646|consen 191 LYTASED-RTIKLWDLSLG-----VLLLTIT--------FPSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAG 255 (476)
T ss_pred EEEecCC-ceEEEEEeccc-----eeeEEEe--------cCCcceeEEEccccc-EEEecCCcceEEeeehhcCCccccc
Confidence 8899988 99999999432 3333222 224899999999998 99999999999988775432
Q ss_pred ---------cCceeeccCCCC--ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCC
Q 037120 246 ---------LPSLELSTGSHG--TLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASML 314 (489)
Q Consensus 246 ---------~~~~~~~~~h~~--~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 314 (489)
...++.+.+|.+ .|+|++++-||.+|++|+.||.|+|||+.+.++++++....++ |+.+.+.|--
T Consensus 256 v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgp----VtnL~i~~~~ 331 (476)
T KOG0646|consen 256 VNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGP----VTNLQINPLE 331 (476)
T ss_pred ccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccc----cceeEeeccc
Confidence 013345568888 9999999999999999999999999999999998888754544 9999886643
No 155
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.8e-18 Score=160.49 Aligned_cols=262 Identities=12% Similarity=0.140 Sum_probs=172.2
Q ss_pred cCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEE
Q 037120 150 LHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIA 229 (489)
Q Consensus 150 ~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 229 (489)
-|... |++++|.|... .|++++.| |+|++|++..........+.+.. ++.+|.++|.+++..+.+. .+++
T Consensus 292 s~~d~---ir~l~~~~sep-~lit~sed-~~lk~WnLqk~~~s~~~~~epi~----tfraH~gPVl~v~v~~n~~-~~ys 361 (577)
T KOG0642|consen 292 SHDDC---IRALAFHPSEP-VLITASED-GTLKLWNLQKAKKSAEKDVEPIL----TFRAHEGPVLCVVVPSNGE-HCYS 361 (577)
T ss_pred cchhh---hhhhhcCCCCC-eEEEeccc-cchhhhhhcccCCccccceeeeE----EEecccCceEEEEecCCce-EEEe
Confidence 35555 88899999865 88899998 99999999443222223344444 4599999999999999999 9999
Q ss_pred EeCCCcEEEEECCCCC------cC--ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccC
Q 037120 230 SDTHGVVNIWDRRVGV------LP--SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVC 301 (489)
Q Consensus 230 ~s~dg~i~iwd~~~~~------~~--~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~ 301 (489)
|+.||+|+.|++-... .+ ....+.+|.+.|..+++++....|++++.||++++|+...... .+|....+.
T Consensus 362 gg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~- 439 (577)
T KOG0642|consen 362 GGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEH- 439 (577)
T ss_pred eccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCcccc-
Confidence 9999999999654221 11 2334569999999999999999999999999999999876554 333322211
Q ss_pred CCCeeEEEeCCCCcce--eeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCc
Q 037120 302 HLPLTSLKLASMLEKI--GTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNN 379 (489)
Q Consensus 302 ~~~v~~l~~~~~~~~i--~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (489)
..-.++.+-...-.+ +++. .+...+.+.-.+....+... .-.. .
T Consensus 440 -g~Plsvd~~ss~~a~~~~s~~----------------------------~~~~~~~~~ev~s~~~~~~s--~~~~---~ 485 (577)
T KOG0642|consen 440 -GYPLSVDRTSSRPAHSLASFR----------------------------FGYTSIDDMEVVSDLLIFES--SASP---G 485 (577)
T ss_pred -CCcceEeeccchhHhhhhhcc----------------------------cccccchhhhhhhheeeccc--cCCC---c
Confidence 112233322211000 0000 00000000000000000000 0000 0
Q ss_pred cccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCC
Q 037120 380 SADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPL 459 (489)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~ 459 (489)
....-....+.|.|.. .+.+++-+|+.|+++|..++ ..+.... .|...|+++++.|+
T Consensus 486 ~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~----------~~l~s~~------------a~~~svtslai~~n 542 (577)
T KOG0642|consen 486 PRRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTG----------KILHSMV------------AHKDSVTSLAIDPN 542 (577)
T ss_pred ccccCccceEEecCCC-CeeEecccCCceeccccccc----------ccchhee------------eccceecceeecCC
Confidence 0000112345666665 56777889999999999999 7887777 89999999999999
Q ss_pred CCeEEeccCcceeEEEecccc
Q 037120 460 NNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 460 ~~~i~sgs~dg~i~v~~~~~~ 480 (489)
+.++++|+.|+.+.+|..+-+
T Consensus 543 g~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 543 GPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred CceEEeecCCceeehhhccch
Confidence 999999999999999988543
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.79 E-value=4.6e-18 Score=147.77 Aligned_cols=263 Identities=11% Similarity=0.091 Sum_probs=178.9
Q ss_pred CCCceeEEEECCC----CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 95 GKPGISALDFDCK----GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 95 ~~~~V~~~~fs~~----g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+.+.-..++|+-+ ..+||+|+.-|.|+|.|+.++++.. .+.+|-.+ |..+.|.|+..++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~--------------~~~ghG~s---INeik~~p~~~ql 150 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK--------------NYRGHGGS---INEIKFHPDRPQL 150 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc--------------ceeccCcc---chhhhcCCCCCcE
Confidence 4455777777755 4689999999999999999855544 23566666 8889999999999
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC---
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP--- 247 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--- 247 (489)
+++++.| .+|++|++... ..+.-. ....||.+.|.++.|++++. .|++++.|.++++|++...+..
T Consensus 151 vls~SkD-~svRlwnI~~~-----~Cv~Vf----GG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~l 219 (385)
T KOG1034|consen 151 VLSASKD-HSVRLWNIQTD-----VCVAVF----GGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKL 219 (385)
T ss_pred EEEecCC-ceEEEEeccCC-----eEEEEe----cccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhh
Confidence 9999999 99999999432 222222 22389999999999999999 9999999999999999843110
Q ss_pred -----------------------ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC-CcccceeecCCccCCC
Q 037120 248 -----------------------SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG-GRTSAPFHNHKEVCHL 303 (489)
Q Consensus 248 -----------------------~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~-~~~~~~~~~~~~~~~~ 303 (489)
......-|...|-|+.|- |+++++-+.++.|..|-.-. .+.+...+..+..
T Consensus 220 E~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~--- 294 (385)
T KOG1034|consen 220 ELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESA--- 294 (385)
T ss_pred hhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccc---
Confidence 001122577778888884 68889889999999998732 2223222211111
Q ss_pred CeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccc
Q 037120 304 PLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQ 383 (489)
Q Consensus 304 ~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (489)
.+- + ........+|+.+.| .+..-
T Consensus 295 -~Ti---------~----~~~~~~~c~iWfirf-----------------------------------~~d~~------- 318 (385)
T KOG1034|consen 295 -TTI---------L----GEFDYPMCDIWFIRF-----------------------------------AFDPW------- 318 (385)
T ss_pred -eee---------e----eEeccCccceEEEEE-----------------------------------eecHH-------
Confidence 000 0 111112222333322 11111
Q ss_pred cCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccc--hhhHhhhhcccCCcccCCCceEEEEeeCCCC
Q 037120 384 LHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIE--SLSERTKLKKENRFVPLSEGVTACVTHPLNN 461 (489)
Q Consensus 384 ~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~ 461 (489)
+..|+.|.+.|.|++||+... +... .+.- ---...|...+|+-++.
T Consensus 319 ------------~~~la~gnq~g~v~vwdL~~~----------ep~~~ttl~~----------s~~~~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 319 ------------QKMLALGNQSGKVYVWDLDNN----------EPPKCTTLTH----------SKSGSTVRQTSFSRDGS 366 (385)
T ss_pred ------------HHHHhhccCCCcEEEEECCCC----------CCccCceEEe----------ccccceeeeeeecccCc
Confidence 667888899999999999877 2211 1110 01135689999999999
Q ss_pred eEEeccCcceeEEEecc
Q 037120 462 TIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 462 ~i~sgs~dg~i~v~~~~ 478 (489)
.|+....||+|.=|..-
T Consensus 367 ~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 367 ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEEeCCCcEEEEEee
Confidence 99999999999988753
No 157
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.79 E-value=4.2e-18 Score=154.17 Aligned_cols=211 Identities=18% Similarity=0.255 Sum_probs=156.3
Q ss_pred eeEEEeeCCCC-CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcE
Q 037120 158 LDAVRWNLANQ-DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVV 236 (489)
Q Consensus 158 V~~v~~~~~~~-~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i 236 (489)
|++++|+|... .++++|..- |+|-+||++... ...... .-+..|..+|.++.|+|.+.+.+++.|.||+|
T Consensus 189 it~l~fHPt~~~~lva~GdK~-G~VG~Wn~~~~~----~d~d~v----~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 189 ITSLAFHPTENRKLVAVGDKG-GQVGLWNFGTQE----KDKDGV----YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred eEEEEecccCcceEEEEccCC-CcEEEEecCCCC----CccCce----EEeccCCccccceEecCCChhheeeeccCcee
Confidence 99999999977 677777776 999999995211 111111 22478999999999999999999999999999
Q ss_pred EEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCCc
Q 037120 237 NIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 237 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
++-|++......+-....-...+.++.|+.+...++.+..=|...+||+|+++. ...+..|... |++|
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK----I~sv------- 328 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK----ITSV------- 328 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc----ccee-------
Confidence 999999864332222222345677899999999999998877999999999764 4444444433 4444
Q ss_pred ceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCC
Q 037120 316 KIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTN 395 (489)
Q Consensus 316 ~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (489)
+++|..
T Consensus 329 -------------------~~NP~~------------------------------------------------------- 334 (498)
T KOG4328|consen 329 -------------------ALNPVC------------------------------------------------------- 334 (498)
T ss_pred -------------------ecCCCC-------------------------------------------------------
Confidence 333321
Q ss_pred cEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEE
Q 037120 396 SIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 396 ~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~ 475 (489)
..+++++|.|++++|||+..-...+. -.+.. +.|.-.|.++.|+|++..|++.+.|..|+||
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~s-----p~lst-------------~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ 396 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKAS-----PFLST-------------LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVF 396 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCC-----cceec-------------ccccceeeeeEEcCCCCceEeeccCCceEEe
Confidence 56788999999999999986522110 01111 2699999999999999999999999999999
Q ss_pred ecccc
Q 037120 476 SQKQQ 480 (489)
Q Consensus 476 ~~~~~ 480 (489)
+.+.-
T Consensus 397 dss~~ 401 (498)
T KOG4328|consen 397 DSSCI 401 (498)
T ss_pred ecccc
Confidence 98633
No 158
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=8.4e-18 Score=155.40 Aligned_cols=174 Identities=14% Similarity=0.140 Sum_probs=127.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCC-CCE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLAN-QDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~-~~~ 170 (489)
+..|..-|+|++|+.+|.+||+|+.|-.+.|||.-..+.. |.--++|+.. |.++.|-|.. ..+
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll-------------hsI~TgHtaN---IFsvKFvP~tnnri 109 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL-------------HSISTGHTAN---IFSVKFVPYTNNRI 109 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhccee-------------eeeecccccc---eeEEeeeccCCCeE
Confidence 4456666999999999999999999999999998763222 2233778888 9999999864 347
Q ss_pred EEEEecCCCEEEEEEeccCCCC--CceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-
Q 037120 171 VACASTRSNVVSIYDIGYISDE--PVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP- 247 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~- 247 (489)
+++|+.| ..|+++|+...+.. ......+...+ ..|+..|..|+-.|++++.|.++++||+|+-+|+|.....
T Consensus 110 v~sgAgD-k~i~lfdl~~~~~~~~d~~~~~~~~~~----~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~ 184 (758)
T KOG1310|consen 110 VLSGAGD-KLIKLFDLDSSKEGGMDHGMEETTRCW----SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCN 184 (758)
T ss_pred EEeccCc-ceEEEEecccccccccccCccchhhhh----hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCC
Confidence 7777777 99999999642221 11122223333 7799999999999999889999999999999999974211
Q ss_pred ----ceee---ccCCCCceeEEEEeecCC-EEEEEeCCCeEEEEEcC
Q 037120 248 ----SLEL---STGSHGTLNSIQLHAENQ-IIFAAGKHGSIYLWDLR 286 (489)
Q Consensus 248 ----~~~~---~~~h~~~v~~~~~~p~~~-~l~~~~~dg~i~lwd~~ 286 (489)
+... ....--...|+.++|..+ +|++|+.|-..++||.|
T Consensus 185 p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 185 PDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred ccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 1100 111123456999999766 46666779999999954
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.78 E-value=3.1e-17 Score=149.88 Aligned_cols=270 Identities=15% Similarity=0.181 Sum_probs=185.0
Q ss_pred CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCcee
Q 037120 117 SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEV 196 (489)
Q Consensus 117 dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~ 196 (489)
...+++||+....... .+..|+.+ .++.++.|+..+...+++.+.| ..|++|.-.... .....
T Consensus 11 gd~~kl~D~s~~~~~~--------------~~~~~t~~-pg~~s~~w~~~n~lvvas~~gd-k~~~~~~K~g~~-~~Vp~ 73 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKS--------------EYVHQTAE-PGDFSFNWQRRNFLVVASMAGD-KVMRIKEKDGKT-PEVPR 73 (673)
T ss_pred CCceEEeecccccCcc--------------ccccCCCC-CcceeeeccccceEEEeecCCc-eeEEEecccCCC-Cccce
Confidence 3469999998733322 22223332 3388899998764344444555 889999763221 11111
Q ss_pred eeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC
Q 037120 197 LKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK 276 (489)
Q Consensus 197 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~ 276 (489)
+... .+. .-.|++...... ++++|+..+.|+|||++.. .+.+.+.+|...|+++.++-...+|++++.
T Consensus 74 ~~k~-------~gd--~~~Cv~~~s~S~-y~~sgG~~~~Vkiwdl~~k--l~hr~lkdh~stvt~v~YN~~DeyiAsvs~ 141 (673)
T KOG4378|consen 74 VRKL-------TGD--NAFCVACASQSL-YEISGGQSGCVKIWDLRAK--LIHRFLKDHQSTVTYVDYNNTDEYIASVSD 141 (673)
T ss_pred eecc-------ccc--hHHHHhhhhcce-eeeccCcCceeeehhhHHH--HHhhhccCCcceeEEEEecCCcceeEEecc
Confidence 1110 111 233444444445 8999999999999999953 377788899999999999999999999999
Q ss_pred CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEE
Q 037120 277 HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVL 356 (489)
Q Consensus 277 dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~ 356 (489)
.|.|.|-.+.++....+|....+. .|.-+.|+|..+.++....+++-..+|
T Consensus 142 gGdiiih~~~t~~~tt~f~~~sgq-----------------------------svRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 142 GGDIIIHGTKTKQKTTTFTIDSGQ-----------------------------SVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred CCcEEEEecccCccccceecCCCC-----------------------------eEEEeecccccceeeEeeccCCeEEEE
Confidence 999999999987765555432111 123456677777777777777755566
Q ss_pred EeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhh
Q 037120 357 DVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERT 436 (489)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 436 (489)
++....... .|... +..+-+.+||+|....++++.+.|..|++||.... .....+.
T Consensus 193 Dv~g~sp~~------~~~~~-----HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~----------~s~~~l~--- 248 (673)
T KOG4378|consen 193 DVQGMSPIF------HASEA-----HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ----------ASTDRLT--- 248 (673)
T ss_pred eccCCCccc------chhhh-----ccCCcCcceecCCccceEEEecccceEEEeecccc----------cccceee---
Confidence 654322111 11111 11233678999999999999999999999999977 5554443
Q ss_pred hhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecc
Q 037120 437 KLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 437 ~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~ 478 (489)
...+..+|||.|+|-++++|+..|.|..|.-.
T Consensus 249 ----------y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 249 ----------YSHPLSTVAFSECGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred ----------ecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence 55688999999999999999999999987543
No 160
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=8.1e-17 Score=157.67 Aligned_cols=251 Identities=12% Similarity=0.101 Sum_probs=178.7
Q ss_pred cCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEE
Q 037120 150 LHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIA 229 (489)
Q Consensus 150 ~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 229 (489)
+|+.. .+.|+|.|++. .|++++.| |.|++|+.......|..+ ..+...|.+++.. .. +|++
T Consensus 11 aht~G---~t~i~~d~~ge-fi~tcgsd-g~ir~~~~~sd~e~P~ti-----------~~~g~~v~~ia~~--s~-~f~~ 71 (933)
T KOG1274|consen 11 AHTGG---LTLICYDPDGE-FICTCGSD-GDIRKWKTNSDEEEPETI-----------DISGELVSSIACY--SN-HFLT 71 (933)
T ss_pred hccCc---eEEEEEcCCCC-EEEEecCC-CceEEeecCCcccCCchh-----------hccCceeEEEeec--cc-ceEE
Confidence 46655 77899999998 56666666 999999985443332111 1155577777653 44 8999
Q ss_pred EeCCCcEEEEECCCCCcC-ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEE
Q 037120 230 SDTHGVVNIWDRRVGVLP-SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSL 308 (489)
Q Consensus 230 ~s~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l 308 (489)
|+.+++|.+|.+..++.. .+. ...-++.+++|+-+|.++++||.|-.|++-++........+.+|... |.+|
T Consensus 72 ~s~~~tv~~y~fps~~~~~iL~---Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap----Vl~l 144 (933)
T KOG1274|consen 72 GSEQNTVLRYKFPSGEEDTILA---RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP----VLQL 144 (933)
T ss_pred eeccceEEEeeCCCCCccceee---eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCc----eeee
Confidence 999999999999887644 333 33578999999999999999999999999999998888999999877 8888
Q ss_pred EeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecC-CCCCCcCCCCccccccCCC
Q 037120 309 KLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHC-PPPAWLSDSNNSADQLHLR 387 (489)
Q Consensus 309 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 387 (489)
.|+|.+.+++... .++. ..++++.++...+... +...... .....+.
T Consensus 145 ~~~p~~~fLAvss--------------------------~dG~-v~iw~~~~~~~~~tl~~v~k~n~~-----~~s~i~~ 192 (933)
T KOG1274|consen 145 SYDPKGNFLAVSS--------------------------CDGK-VQIWDLQDGILSKTLTGVDKDNEF-----ILSRICT 192 (933)
T ss_pred eEcCCCCEEEEEe--------------------------cCce-EEEEEcccchhhhhcccCCccccc-----cccceee
Confidence 8888877776422 1111 1122222222211110 0001111 1124556
Q ss_pred cceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEecc
Q 037120 388 KPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGT 467 (489)
Q Consensus 388 ~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs 467 (489)
+++|+|+++.+++.+ .|++|++|+.... +....+.-. .+...+.+++|+|.|.+||+++
T Consensus 193 ~~aW~Pk~g~la~~~-~d~~Vkvy~r~~w----------e~~f~Lr~~----------~~ss~~~~~~wsPnG~YiAAs~ 251 (933)
T KOG1274|consen 193 RLAWHPKGGTLAVPP-VDNTVKVYSRKGW----------ELQFKLRDK----------LSSSKFSDLQWSPNGKYIAAST 251 (933)
T ss_pred eeeecCCCCeEEeec-cCCeEEEEccCCc----------eeheeeccc----------ccccceEEEEEcCCCcEEeeec
Confidence 799999999988874 7899999998877 544444311 3455599999999999999999
Q ss_pred CcceeEEEeccc
Q 037120 468 KNSSLLVVSQKQ 479 (489)
Q Consensus 468 ~dg~i~v~~~~~ 479 (489)
.||.|.||..+.
T Consensus 252 ~~g~I~vWnv~t 263 (933)
T KOG1274|consen 252 LDGQILVWNVDT 263 (933)
T ss_pred cCCcEEEEeccc
Confidence 999999998884
No 161
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=1.3e-17 Score=156.57 Aligned_cols=163 Identities=10% Similarity=0.213 Sum_probs=124.5
Q ss_pred CCcEEEE--EecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEE
Q 037120 107 KGIYLVS--ATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIY 184 (489)
Q Consensus 107 ~g~~la~--g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vw 184 (489)
+...+|+ .+..|.|.||++...-..... .+. ....+.-|+.+.|+|.....|+.+++| |.|++|
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDg------v~p-------~l~Ngt~vtDl~WdPFD~~rLAVa~dd-g~i~lW 655 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDG------VMP-------GLFNGTLVTDLHWDPFDDERLAVATDD-GQINLW 655 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcc------ccc-------ccccCceeeecccCCCChHHeeecccC-ceEEEE
Confidence 3444443 455789999999873222211 110 111122299999999988899999988 999999
Q ss_pred EeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEE
Q 037120 185 DIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQL 264 (489)
Q Consensus 185 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~ 264 (489)
.+..+.... ....+.... ..|...|+++.|+|-..+.|++++.|.+|++||+++.+ ....+.+|.+.|..++|
T Consensus 656 r~~a~gl~e-~~~tPe~~l----t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~--~~~~l~gHtdqIf~~AW 728 (1012)
T KOG1445|consen 656 RLTANGLPE-NEMTPEKIL----TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK--LYSRLVGHTDQIFGIAW 728 (1012)
T ss_pred EeccCCCCc-ccCCcceee----ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh--hhheeccCcCceeEEEE
Confidence 996554321 233334433 78999999999999888899999999999999999987 33356699999999999
Q ss_pred eecCCEEEEEeCCCeEEEEEcCCCcc
Q 037120 265 HAENQIIFAAGKHGSIYLWDLRGGRT 290 (489)
Q Consensus 265 ~p~~~~l~~~~~dg~i~lwd~~~~~~ 290 (489)
+|+|+.+++.+.||+|++|..+++..
T Consensus 729 SpdGr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 729 SPDGRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred CCCCcceeeeecCceEEEeCCCCCCC
Confidence 99999999999999999999998654
No 162
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.2e-16 Score=133.33 Aligned_cols=183 Identities=13% Similarity=0.131 Sum_probs=128.8
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
|.+-+++|.+++|++|..+|.|.++.+.+......++ ++ . ..-....+|... |..++|..+ +|++++ |
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~-~g--k-~~iv~eqahdgp---iy~~~f~d~---~Lls~g--d 80 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEP-PG--K-LKIVPEQAHDGP---IYYLAFHDD---FLLSGG--D 80 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCC-CC--C-cceeeccccCCC---eeeeeeehh---heeecc--C
Confidence 5556799999999999999999999988743322211 00 1 111122557777 777999843 777888 6
Q ss_pred CEEEEEEeccCCCC--CceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 179 NVVSIYDIGYISDE--PVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 179 g~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
|.|+-|..+..... ....+. .....+...-.-..|+++...|..+ -++.++.|+.++-||+++++ ..+.+.+|+
T Consensus 81 G~V~gw~W~E~~es~~~K~lwe-~~~P~~~~~~evPeINam~ldP~en-Si~~AgGD~~~y~~dlE~G~--i~r~~rGHt 156 (325)
T KOG0649|consen 81 GLVYGWEWNEEEESLATKRLWE-VKIPMQVDAVEVPEINAMWLDPSEN-SILFAGGDGVIYQVDLEDGR--IQREYRGHT 156 (325)
T ss_pred ceEEEeeehhhhhhccchhhhh-hcCccccCcccCCccceeEeccCCC-cEEEecCCeEEEEEEecCCE--EEEEEcCCc
Confidence 99999988654321 111111 1101111011224789999999888 45555579999999999998 667888999
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecC
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNH 297 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 297 (489)
+.|.++.--.....+++|+.||++|+||+++++++..+...
T Consensus 157 DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y 197 (325)
T KOG0649|consen 157 DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPY 197 (325)
T ss_pred ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccc
Confidence 99999998555667899999999999999999987777643
No 163
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=7.6e-18 Score=168.73 Aligned_cols=256 Identities=16% Similarity=0.207 Sum_probs=174.3
Q ss_pred CCCceeEEEECCCCcE----EEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 95 GKPGISALDFDCKGIY----LVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~----la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
....-+.++|.+.|.. ||.|..||.|.+||......-. ...-......|++. |..+.|++...++
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~--------~~~~la~~~~h~G~---V~gLDfN~~q~nl 131 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANA--------SEEVLATKSKHTGP---VLGLDFNPFQGNL 131 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCc--------chHHHhhhcccCCc---eeeeeccccCCce
Confidence 3445788999988776 8999999999999988731101 11112223457777 8889999999889
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
|++|+.| |.|.|||++..... +... ...-...|.+++|+..-.+.|++++.+|.+.|||+|.. +++++
T Consensus 132 LASGa~~-geI~iWDlnn~~tP----~~~~------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~ 199 (1049)
T KOG0307|consen 132 LASGADD-GEILIWDLNKPETP----FTPG------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIK 199 (1049)
T ss_pred eeccCCC-CcEEEeccCCcCCC----CCCC------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCC-Ccccc
Confidence 9999988 99999999642211 1110 12244689999999998889999999999999999986 34343
Q ss_pred ecc-CCCCceeEEEEeecCCE-EEEEeC---CCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCC-cceeecccc
Q 037120 251 LST-GSHGTLNSIQLHAENQI-IFAAGK---HGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASML-EKIGTLKAQ 323 (489)
Q Consensus 251 ~~~-~h~~~v~~~~~~p~~~~-l~~~~~---dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~-~~i~~~~~~ 323 (489)
... .....+..++|+|++.. +++++. .-.|.+||+|.-.. ++.+++|+.. |.++.|++.+ .++.+...+
T Consensus 200 ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G----ilslsWc~~D~~lllSsgkD 275 (1049)
T KOG0307|consen 200 LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG----ILSLSWCPQDPRLLLSSGKD 275 (1049)
T ss_pred cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccc----eeeeccCCCCchhhhcccCC
Confidence 222 22245789999998754 444444 34799999998655 8888899988 9999998876 333332111
Q ss_pred ceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeec
Q 037120 324 SKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSS 403 (489)
Q Consensus 324 ~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 403 (489)
..-+.++++ ++.+..-......|..+ +.|.|.....++.++
T Consensus 276 -------~~ii~wN~~--------------------tgEvl~~~p~~~nW~fd------------v~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 276 -------NRIICWNPN--------------------TGEVLGELPAQGNWCFD------------VQWCPRNPSVMAAAS 316 (1049)
T ss_pred -------CCeeEecCC--------------------CceEeeecCCCCcceee------------eeecCCCcchhhhhe
Confidence 112223332 22222211112234444 567777788888999
Q ss_pred CCCcEEEEeccCC
Q 037120 404 SDHGIHLLDFFPG 416 (489)
Q Consensus 404 ~d~~i~vwd~~~~ 416 (489)
-||.|-|+.+...
T Consensus 317 fdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 317 FDGKISIYSLQGT 329 (1049)
T ss_pred eccceeeeeeecC
Confidence 9999999999876
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.6e-17 Score=154.36 Aligned_cols=202 Identities=17% Similarity=0.196 Sum_probs=147.3
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..+..+|++++|.|....|++++.||+|++|+++.... ... +..++...+.+|..+ |.|++..+.++ .+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~-s~~-----~~~epi~tfraH~gP---Vl~v~v~~n~~-~~ 359 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK-SAE-----KDVEPILTFRAHEGP---VLCVVVPSNGE-HC 359 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC-ccc-----cceeeeEEEecccCc---eEEEEecCCce-EE
Confidence 444566799999999999999999999999999955111 111 257788888999999 99999999986 77
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
.+|+.| |+|+.|++. ....+-... ........+.||++.|+.+++++... .|++|+.||++++|+........+..
T Consensus 360 ysgg~D-g~I~~w~~p-~n~dp~ds~-dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~~~~f~~ 435 (577)
T KOG0642|consen 360 YSGGID-GTIRCWNLP-PNQDPDDSY-DPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEESPCTFGE 435 (577)
T ss_pred EeeccC-ceeeeeccC-CCCCccccc-Ccchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccCCcCccccCC
Confidence 788888 999999885 222221111 11223444589999999999999888 89999999999999875433200000
Q ss_pred ------------------------------------------cc-------CCCCceeEEEEeecCCEEEEEeCCCeEEE
Q 037120 252 ------------------------------------------ST-------GSHGTLNSIQLHAENQIIFAAGKHGSIYL 282 (489)
Q Consensus 252 ------------------------------------------~~-------~h~~~v~~~~~~p~~~~l~~~~~dg~i~l 282 (489)
+. .-...++-+.++|.+.+.+++..|+.|++
T Consensus 436 ~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~ 515 (577)
T KOG0642|consen 436 PKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRF 515 (577)
T ss_pred ccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceec
Confidence 00 00134567788888888888888999999
Q ss_pred EEcCCCcccceeecCCccCCCCeeEEEeC
Q 037120 283 WDLRGGRTSAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 283 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~ 311 (489)
+|..+++.+.....|... ++++++.
T Consensus 516 ~dn~~~~~l~s~~a~~~s----vtslai~ 540 (577)
T KOG0642|consen 516 FDNKTGKILHSMVAHKDS----VTSLAID 540 (577)
T ss_pred ccccccccchheeeccce----ecceeec
Confidence 999888888777777666 5555433
No 165
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=8.5e-17 Score=145.34 Aligned_cols=164 Identities=13% Similarity=0.169 Sum_probs=130.6
Q ss_pred cCCCceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 94 FGKPGISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 94 ~~~~~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
.|...|.+++|+.. .+.||+|+.|.+|++||+.++++... +..|... |.+++|+|.....|+
T Consensus 241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s--------------~~~~~k~---Vq~l~wh~~~p~~LL 303 (463)
T KOG0270|consen 241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSS--------------ITHHGKK---VQTLEWHPYEPSVLL 303 (463)
T ss_pred cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCccee--------------hhhcCCc---eeEEEecCCCceEEE
Confidence 35556888888876 57899999999999999999665542 2335555 999999999999999
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeec
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELS 252 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 252 (489)
+|+.| ++|.+.|.+...... . ... -.+.|-.++|.|...+.++++..||+|+-+|+|...++ +...
T Consensus 304 sGs~D-~~V~l~D~R~~~~s~-~----~wk-------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~-vwt~ 369 (463)
T KOG0270|consen 304 SGSYD-GTVALKDCRDPSNSG-K----EWK-------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP-VWTL 369 (463)
T ss_pred ecccc-ceEEeeeccCccccC-c----eEE-------eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc-eeEE
Confidence 99999 999999997522111 1 111 23489999999999989999999999999999998655 4467
Q ss_pred cCCCCceeEEEEeecCCEE-EEEeCCCeEEEEEcCCC
Q 037120 253 TGSHGTLNSIQLHAENQII-FAAGKHGSIYLWDLRGG 288 (489)
Q Consensus 253 ~~h~~~v~~~~~~p~~~~l-~~~~~dg~i~lwd~~~~ 288 (489)
.+|.++|.++++++.-+.+ .+++.|+.|++|++..-
T Consensus 370 ~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 370 KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred EeccCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 7999999999999977664 45566999999998753
No 166
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=9.2e-16 Score=131.44 Aligned_cols=294 Identities=15% Similarity=0.180 Sum_probs=179.3
Q ss_pred ceeEEEECC---CCcEEEEEec----CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCC--
Q 037120 98 GISALDFDC---KGIYLVSATR----SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQ-- 168 (489)
Q Consensus 98 ~V~~~~fs~---~g~~la~g~~----dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~-- 168 (489)
.+.++.|+. ...+||.|+. ...|.|-.+....- .... .......++++.+.|.|+..
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~----------e~~~----~a~fd~~YP~tK~~wiPd~~g~ 111 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG----------ELVE----DANFDHPYPVTKLMWIPDSKGV 111 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC----------ceec----cCCCCCCCCccceEecCCcccc
Confidence 367778873 2567888885 45666665553111 1111 11123345588899999863
Q ss_pred --CEEEEEecCCCEEEEEEeccCCCC--CceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 037120 169 --DEVACASTRSNVVSIYDIGYISDE--PVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVG 244 (489)
Q Consensus 169 --~~l~s~~~d~g~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 244 (489)
.+|++++ -.+|+|.+...... ...++...+ -..+..++++..|+.-.++++.++|-|.+..|||++++
T Consensus 112 ~pdlLATs~---D~LRlWri~~ee~~~~~~~~L~~~k-----ns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~ 183 (364)
T KOG0290|consen 112 YPDLLATSS---DFLRLWRIGDEESRVELQSVLNNNK-----NSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG 183 (364)
T ss_pred Ccchhhccc---CeEEEEeccCcCCceehhhhhccCc-----ccccCCcccccccccCCcceeEeecccCeEEEEEEeec
Confidence 3666665 49999999632211 111222111 15577899999999999989999999999999999987
Q ss_pred CcC-ceeeccCCCCceeEEEEeecCCEE-EEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCC-cceeecc
Q 037120 245 VLP-SLELSTGSHGTLNSIQLHAENQII-FAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASML-EKIGTLK 321 (489)
Q Consensus 245 ~~~-~~~~~~~h~~~v~~~~~~p~~~~l-~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~i~~~~ 321 (489)
..- +...+.+|..+|..++|...+..+ ++.|.||.+|+||+|..+-...+..... ...|...|+|++.. .+++++
T Consensus 184 ~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~-~~~pLlRLswnkqDpnymATf- 261 (364)
T KOG0290|consen 184 VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS-PSTPLLRLSWNKQDPNYMATF- 261 (364)
T ss_pred cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC-CCCcceeeccCcCCchHHhhh-
Confidence 321 223344999999999999876654 5557799999999998664322221111 12446677777654 333332
Q ss_pred ccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEe
Q 037120 322 AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVG 401 (489)
Q Consensus 322 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 401 (489)
..+..=..++++..... + -.....++..+..++|.|.....+.+
T Consensus 262 -------------------------~~dS~~V~iLDiR~P~t------p-----va~L~~H~a~VNgIaWaPhS~~hict 305 (364)
T KOG0290|consen 262 -------------------------AMDSNKVVILDIRVPCT------P-----VARLRNHQASVNGIAWAPHSSSHICT 305 (364)
T ss_pred -------------------------hcCCceEEEEEecCCCc------c-----eehhhcCcccccceEecCCCCceeee
Confidence 22221112333321100 0 00011122345667899988999999
Q ss_pred ecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCC-CeEEeccC
Q 037120 402 SSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLN-NTIVAGTK 468 (489)
Q Consensus 402 gs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~-~~i~sgs~ 468 (489)
+++|..+.+||+...... . ..-+.+. ..-.++|+.+.|+|.. ..|+.+..
T Consensus 306 aGDD~qaliWDl~q~~~~--~----~~dPila-----------y~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 306 AGDDCQALIWDLQQMPRE--N----GEDPILA-----------YTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred cCCcceEEEEeccccccc--C----CCCchhh-----------hhccceeeeeeecccCCCEEEEEec
Confidence 999999999999866110 0 0001111 1245789999999866 47776654
No 167
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=8.2e-16 Score=152.56 Aligned_cols=312 Identities=15% Similarity=0.123 Sum_probs=182.9
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEee-CCCCCEEEEEecC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWN-LANQDEVACASTR 177 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~-~~~~~~l~s~~~d 177 (489)
-..+.|+|-...++++...-.|+|||++..+....- ..+......|+.+.+- .+...++++++.|
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F--------------~n~~~~~t~Vs~l~liNe~D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGF--------------DNGAFPDTRVSDLELINEQDDALLLTASSD 1132 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccc--------------cCCCCCCCccceeeeecccchhheeeeccC
Confidence 566788998889999988889999999986665421 1112223348888874 4445588888888
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCC
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHG 257 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~ 257 (489)
|.|+||+-.....++.+.+.-.....-.+.+-.+.=.-+.|..... +|+++|.-..|+|||..... .+.....+-+.
T Consensus 1133 -GvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~-~~~diP~~s~t 1209 (1387)
T KOG1517|consen 1133 -GVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQ-VVADIPYGSST 1209 (1387)
T ss_pred -ceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccce-eEeecccCCCc
Confidence 9999998744332222222222211111111111224467887777 66666668899999998743 22223334456
Q ss_pred ceeEEEEee-cCCEEEEEeCCCeEEEEEcCCCcc---cceeecCCccCCCCeeEEEeCCCCc-ceeeccccceeecccee
Q 037120 258 TLNSIQLHA-ENQIIFAAGKHGSIYLWDLRGGRT---SAPFHNHKEVCHLPLTSLKLASMLE-KIGTLKAQSKIVSQEIH 332 (489)
Q Consensus 258 ~v~~~~~~p-~~~~l~~~~~dg~i~lwd~~~~~~---~~~~~~~~~~~~~~v~~l~~~~~~~-~i~~~~~~~~~~~~~i~ 332 (489)
.|+++.-+- .|+.+++|..||.|++||.|.... +...+.|... .+|..+.+.+.|- .+.+
T Consensus 1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~--~~Iv~~slq~~G~~elvS------------- 1274 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV--EPIVHLSLQRQGLGELVS------------- 1274 (1387)
T ss_pred cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCc--ccceeEEeecCCCcceee-------------
Confidence 677766543 468888888899999999997543 5555566644 4466666665542 1222
Q ss_pred EEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEe
Q 037120 333 SIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLD 412 (489)
Q Consensus 333 ~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd 412 (489)
++.++. ..++++..........+...|...... +.-..-....++++|+. +.|+||+
T Consensus 1275 -------------gs~~G~-I~~~DlR~~~~e~~~~iv~~~~yGs~l--------Tal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1275 -------------GSQDGD-IQLLDLRMSSKETFLTIVAHWEYGSAL--------TALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred -------------eccCCe-EEEEecccCcccccceeeeccccCccc--------eeeeeccCCCeeeecCc-ceEEEEe
Confidence 111111 112222111000000000011001000 00001112667888887 9999999
Q ss_pred ccCCCCCCeeeccCcccchhhHhhhhcccCCccc-CCCceEEEEeeCCCCeEEeccCcceeEEEecccccc
Q 037120 413 FFPGSSSPSHVDYNEDIESLSERTKLKKENRFVP-LSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCT 482 (489)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~ 482 (489)
+... .+..+. ..+.|.+ -.+.+.+++|||....+|+|+.|..|.||+-.+.-+
T Consensus 1332 ~~G~-----------~l~~~k------~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1332 LSGE-----------QLNIIK------YNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred cChh-----------hhcccc------cCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcCC
Confidence 9755 222222 1133433 346689999999999999999999999999887654
No 168
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=8.7e-16 Score=149.79 Aligned_cols=265 Identities=13% Similarity=0.124 Sum_probs=173.6
Q ss_pred CCceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCC-CEEEE
Q 037120 96 KPGISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQ-DEVAC 173 (489)
Q Consensus 96 ~~~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~-~~l~s 173 (489)
...|+|+.|+|. ..+||.|+.+|.|.+||+........- ... .....|... |+.+.|..+.. .-+++
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s------~ls--~~~~sh~~~---v~~vvW~~~~~~~~f~s 310 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS------GLS--ALEVSHSEP---VTAVVWLQNEHNTEFFS 310 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc------ccc--cccccCCcC---eEEEEEeccCCCCceEE
Confidence 456999999996 567788888999999999884432100 000 001225555 88899965433 24666
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEE---CCCCCc---C
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD---RRVGVL---P 247 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd---~~~~~~---~ 247 (489)
++.| |.|+.|+++.........+.....-...-..-...+++++|.+..++.|+.|+++|.|.--+ .+.... .
T Consensus 311 ~ssD-G~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~ 389 (555)
T KOG1587|consen 311 LSSD-GSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYK 389 (555)
T ss_pred EecC-CcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccc
Confidence 6667 99999998643321111111000000000123458899999999999999999999998733 222220 0
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcC-CCcccceeecCCccCCCCeeEEEeCCCCcceeecccccee
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLR-GGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKI 326 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~-~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~ 326 (489)
.......|.++|+++.++|-+..++.++.|.+++||... ....+..+..+... |++++|||
T Consensus 390 ~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~----v~~vaWSp-------------- 451 (555)
T KOG1587|consen 390 GHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDY----VTDVAWSP-------------- 451 (555)
T ss_pred ccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccce----eeeeEEcC--------------
Confidence 122344788999999999999988888889999999977 43445455444433 44444443
Q ss_pred eccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCC
Q 037120 327 VSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDH 406 (489)
Q Consensus 327 ~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~ 406 (489)
.....++++..||
T Consensus 452 -------------------------------------------------------------------trpavF~~~d~~G 464 (555)
T KOG1587|consen 452 -------------------------------------------------------------------TRPAVFATVDGDG 464 (555)
T ss_pred -------------------------------------------------------------------cCceEEEEEcCCC
Confidence 2245667778999
Q ss_pred cEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 407 GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 407 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
.|.|||+... ..-+..... -+....+.+.|++.+..|+.|...|.+.++.-
T Consensus 465 ~l~iWDLl~~----------~~~Pv~s~~----------~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 465 NLDIWDLLQD----------DEEPVLSQK----------VCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred ceehhhhhcc----------ccCCccccc----------ccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 9999999876 222222210 23456678888999999999999999999865
No 169
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=2.1e-16 Score=140.75 Aligned_cols=171 Identities=18% Similarity=0.205 Sum_probs=134.7
Q ss_pred cccCCCceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..|...|..++|+|- ...||+|+.|.+|.||.+........ ..++...+.+|... |.-|+|+|...++
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~-------ltepvv~L~gH~rr---Vg~V~wHPtA~NV 146 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD-------LTEPVVELYGHQRR---VGLVQWHPTAPNV 146 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC-------cccceEEEeeccee---EEEEeecccchhh
Confidence 5667778999999996 56789999999999999987444332 24556667888888 8889999999999
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
|++++.| ++|.+||+.++. .+ .++. |.+.|.++.|+.+|. +|+|.+.|..|+|||.++++ .+.
T Consensus 147 Llsag~D-n~v~iWnv~tge-----al-------i~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~--~v~ 209 (472)
T KOG0303|consen 147 LLSAGSD-NTVSIWNVGTGE-----AL-------ITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGT--VVS 209 (472)
T ss_pred HhhccCC-ceEEEEeccCCc-----ee-------eecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCc--Eee
Confidence 9999988 999999994432 11 1123 999999999999999 99999999999999999987 554
Q ss_pred eccCCCCc-eeEEEEeecCCEEEEEeC----CCeEEEEEcCCCcc
Q 037120 251 LSTGSHGT-LNSIQLHAENQIIFAAGK----HGSIYLWDLRGGRT 290 (489)
Q Consensus 251 ~~~~h~~~-v~~~~~~p~~~~l~~~~~----dg~i~lwd~~~~~~ 290 (489)
.-.+|.+. -.-+.|-.++. ++++|. +..+-|||..+.+.
T Consensus 210 e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~e 253 (472)
T KOG0303|consen 210 EGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEE 253 (472)
T ss_pred ecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccC
Confidence 44577654 33566778888 555543 88999999887654
No 170
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.73 E-value=1.5e-16 Score=145.48 Aligned_cols=188 Identities=15% Similarity=0.226 Sum_probs=149.9
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|+++.++....|||+++..|.|.|..+.+...... + .| ..+..|.-+.|+|....+|
T Consensus 117 lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~--------------f-~~-~sgqsvRll~ys~skr~lL 180 (673)
T KOG4378|consen 117 LKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTT--------------F-TI-DSGQSVRLLRYSPSKRFLL 180 (673)
T ss_pred ccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccc--------------e-ec-CCCCeEEEeecccccceee
Confidence 445666699999999999999999999999999987333221 1 11 1111277899999998899
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
.+++++ |.|.+||+..... +.+-...|..+...|+|+|.++.+|++.+.|+.|.+||++..... ..
T Consensus 181 ~~asd~-G~VtlwDv~g~sp-----------~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~--~~ 246 (673)
T KOG4378|consen 181 SIASDK-GAVTLWDVQGMSP-----------IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST--DR 246 (673)
T ss_pred EeeccC-CeEEEEeccCCCc-----------ccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc--ce
Confidence 999988 9999999943211 112236799999999999999989999999999999999975422 11
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCC
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASML 314 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~ 314 (489)
+ .-+.+.++++|.++|.+|++|...|.|..||+|..+. +..+..|... |++++|-+.-
T Consensus 247 l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s----Vt~vafq~s~ 305 (673)
T KOG4378|consen 247 L-TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDAS----VTRVAFQPSP 305 (673)
T ss_pred e-eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccc----eeEEEeeecc
Confidence 1 2356899999999999999999999999999998665 8888999988 9999998875
No 171
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.73 E-value=5.2e-16 Score=146.80 Aligned_cols=275 Identities=14% Similarity=0.158 Sum_probs=179.9
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
.|..++|-|||.-|+.+..+ .+.|||.+.+.... ++ .+|... |.||+|+.+|+ .+++|+.|
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llq--------tL------KgHKDt---VycVAys~dGk-rFASG~aD 74 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQ--------PL------KGHKDT---VYCVAYAKDGK-RFASGSAD 74 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCccccc--------cc------ccccce---EEEEEEccCCc-eeccCCCc
Confidence 69999999999888777644 68999999855554 23 556666 99999999996 89999988
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCC
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHG 257 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~ 257 (489)
..|.+|.-... .. .+ ..|.+.|.++.|+|-.. .+++|+- ...-+|...... +.+. ....
T Consensus 75 -K~VI~W~~klE-----G~---Lk------YSH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~qK~--V~K~--kss~ 133 (1081)
T KOG1538|consen 75 -KSVIIWTSKLE-----GI---LK------YSHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQKS--VSKH--KSSS 133 (1081)
T ss_pred -eeEEEeccccc-----ce---ee------eccCCeeeEeecCchHH-Hhhhcch-hhccccChhhhh--HHhh--hhhe
Confidence 99999987211 11 22 45899999999999988 8999984 345678766533 2222 2256
Q ss_pred ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeC
Q 037120 258 TLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLD 337 (489)
Q Consensus 258 ~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 337 (489)
.+.+++|..||++++.|-.+|+|.+=+- +++..-.++. .+....||.+++|+|....-. .++
T Consensus 134 R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~R-pgg~Nspiwsi~~~p~sg~G~----------~di------ 195 (1081)
T KOG1538|consen 134 RIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIER-PGGSNSPIWSICWNPSSGEGR----------NDI------ 195 (1081)
T ss_pred eEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeC-CCCCCCCceEEEecCCCCCCc----------cce------
Confidence 7899999999999999999999998753 3444333332 111135699999988643100 000
Q ss_pred CCCCeEEEEEecCCceEEEEeec--cceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccC
Q 037120 338 PSCSYQLAFHLDDGWSGVLDVYN--SRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFP 415 (489)
Q Consensus 338 p~~~~~~~~~~~~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~ 415 (489)
+++. .|...+..++ |....... ...|.+ ..+++.++ |.|++.|+.|+.+.+|--.
T Consensus 196 -----~aV~----DW~qTLSFy~LsG~~Igk~r-~L~FdP-----------~CisYf~N-GEy~LiGGsdk~L~~fTR~- 252 (1081)
T KOG1538|consen 196 -----LAVA----DWGQTLSFYQLSGKQIGKDR-ALNFDP-----------CCISYFTN-GEYILLGGSDKQLSLFTRD- 252 (1081)
T ss_pred -----EEEE----eccceeEEEEecceeecccc-cCCCCc-----------hhheeccC-CcEEEEccCCCceEEEeec-
Confidence 1110 1332222221 11110000 001111 12334444 5566666788999998543
Q ss_pred CCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEE
Q 037120 416 GSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~ 475 (489)
+ -.+..+. .....|..|+.+|++..++.|-.||+|.-|
T Consensus 253 G----------vrLGTvg------------~~D~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 253 G----------VRLGTVG------------EQDSWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred C----------eEEeecc------------ccceeEEEEEEccCCceEEEEEccCeeehh
Confidence 3 3344444 566789999999999999999999999764
No 172
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.73 E-value=3.2e-16 Score=140.13 Aligned_cols=155 Identities=12% Similarity=0.236 Sum_probs=130.2
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|.++.|.+...+.+++|+.| ..|++|-+......... ..-.+...+..|...|+.+.|+|+|. ++++|+.+|.|.
T Consensus 16 v~s~dfq~n~~~~laT~G~D-~~iriW~v~r~~~~~~~---~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~ 90 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGD-KDIRIWKVNRSEPGGGD---MKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVF 90 (434)
T ss_pred eEEEEeccCcccceecccCc-cceeeeeeeecCCCCCc---eeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceEE
Confidence 88999999887799999988 99999999654332211 12235556799999999999999999 999999999999
Q ss_pred EEECC--------C------CCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCC
Q 037120 238 IWDRR--------V------GVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHL 303 (489)
Q Consensus 238 iwd~~--------~------~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~ 303 (489)
+|-.. + ......+...+|...|..++|+|++.++++++-|+.+++||+..|+.+..+..|...
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y--- 167 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY--- 167 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccc---
Confidence 99766 2 112244556689999999999999999999999999999999999999999999988
Q ss_pred CeeEEEeCCCCcceeecc
Q 037120 304 PLTSLKLASMLEKIGTLK 321 (489)
Q Consensus 304 ~v~~l~~~~~~~~i~~~~ 321 (489)
+..++|.|-+++++++.
T Consensus 168 -vqgvawDpl~qyv~s~s 184 (434)
T KOG1009|consen 168 -VQGVAWDPLNQYVASKS 184 (434)
T ss_pred -cceeecchhhhhhhhhc
Confidence 99999999999997644
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=3.8e-16 Score=133.62 Aligned_cols=219 Identities=13% Similarity=0.182 Sum_probs=146.1
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC-CCCEEEEEec
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA-NQDEVACAST 176 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~-~~~~l~s~~~ 176 (489)
.|.|+.|.|++..||+-. |..|.+|+++.......+. ....-..|... .++-+|+|. ..+.+++.+
T Consensus 125 ~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev--------~ss~s~e~~~~---ftsg~WspHHdgnqv~tt~- 191 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEV--------LSSESAEMRHS---FTSGAWSPHHDGNQVATTS- 191 (370)
T ss_pred ceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheee--------cccccccccce---ecccccCCCCccceEEEeC-
Confidence 599999999999999887 7889999998754422110 00001123334 677899983 334676666
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
++++..||+++... ...++ ..|...|.++.|+|+-+++|++|+.||.|+|||.|..+.+ ++.+.+|.
T Consensus 192 -d~tl~~~D~RT~~~-----~~sI~------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p-v~el~~Hs 258 (370)
T KOG1007|consen 192 -DSTLQFWDLRTMKK-----NNSIE------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP-VQELPGHS 258 (370)
T ss_pred -CCcEEEEEccchhh-----hcchh------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc-ccccCCCc
Confidence 59999999964321 11122 5588899999999999999999999999999999987665 55777999
Q ss_pred CceeEEEEeec-CCEEEEEeCCCeEEEEEcCCCcccceee-cCCcc---CCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 257 GTLNSIQLHAE-NQIIFAAGKHGSIYLWDLRGGRTSAPFH-NHKEV---CHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 257 ~~v~~~~~~p~-~~~l~~~~~dg~i~lwd~~~~~~~~~~~-~~~~~---~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
..|.++.|+|. .+++++||+|..|.+|-...-..-..+. .+... .......+.--+|| .......+...|
T Consensus 259 HWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg-----~l~tydehEDSV 333 (370)
T KOG1007|consen 259 HWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDG-----QLETYDEHEDSV 333 (370)
T ss_pred eEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccc-----ccccccccccce
Confidence 99999999995 5667788889999999876533211111 11100 00001111111121 112344667778
Q ss_pred eEEEeCCCCCeEEEEE
Q 037120 332 HSIDLDPSCSYQLAFH 347 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~ 347 (489)
+.++++.-++.+++.-
T Consensus 334 Y~~aWSsadPWiFASL 349 (370)
T KOG1007|consen 334 YALAWSSADPWIFASL 349 (370)
T ss_pred EEEeeccCCCeeEEEe
Confidence 8888888777765543
No 174
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=1e-16 Score=135.44 Aligned_cols=260 Identities=13% Similarity=0.155 Sum_probs=168.9
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
.++...|+|+.|..++. |.+|..-|.|++|++++.+.... +. ..|... |+.+.--|++ .+.
T Consensus 11 Rp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~--------~r-----~~g~~~---it~lq~~p~d--~l~ 71 (323)
T KOG0322|consen 11 RPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPL--------IR-----LFGRLF---ITNLQSIPND--SLD 71 (323)
T ss_pred ccccchheehhhccchh-hhcccccceEEEEEeecCccchh--------hh-----hhccce---eeceeecCCc--chh
Confidence 35677899999988875 88999999999999998554431 11 012333 7778877864 566
Q ss_pred EEecCCCEEEEEEeccCCCC----------------------Cc-eeee-eceeeee-----------------ecCCcc
Q 037120 173 CASTRSNVVSIYDIGYISDE----------------------PV-EVLK-TRRSVTV-----------------VGSDVQ 211 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~----------------------~~-~~~~-~~~~~~~-----------------~~~~h~ 211 (489)
+-+.| +.+.+|++...... +. +.+. +.+.... .-.+..
T Consensus 72 tqgRd-~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Kl 150 (323)
T KOG0322|consen 72 TQGRD-PLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKL 150 (323)
T ss_pred hcCCC-ceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhcccc
Confidence 67777 99999998652100 00 0000 0000000 001122
Q ss_pred cCeeEEEEecCC-C-cEEEEEeCCCcEEEEECCCCCcC--------ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEE
Q 037120 212 KGLSDLAFSAVN-T-SRLIASDTHGVVNIWDRRVGVLP--------SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIY 281 (489)
Q Consensus 212 ~~v~~~~~~~~~-~-~~l~s~s~dg~i~iwd~~~~~~~--------~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~ 281 (489)
+.+.+..+.-+. . -++++|-++|.+.+||+.++.+. .......|..+|.++.+.+.-..=++||.+..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 344444432222 2 24666779999999999986211 2223347899999999988666667788777888
Q ss_pred EEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeecc
Q 037120 282 LWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNS 361 (489)
Q Consensus 282 lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~ 361 (489)
.|.+....- .++ +..........|..+.+.|
T Consensus 231 ~~Sl~~s~g--slq------------------------~~~e~~lknpGv~gvrIRp----------------------- 261 (323)
T KOG0322|consen 231 MYSLNHSTG--SLQ------------------------IRKEITLKNPGVSGVRIRP----------------------- 261 (323)
T ss_pred eeeeccccC--ccc------------------------ccceEEecCCCccceEEcc-----------------------
Confidence 888764210 000 0000111112222222222
Q ss_pred ceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhccc
Q 037120 362 RVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKE 441 (489)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (489)
+ ++++++++-|+.||||+..+. +.+..+.
T Consensus 262 --------------D-------------------~KIlATAGWD~RiRVyswrtl----------~pLAVLk-------- 290 (323)
T KOG0322|consen 262 --------------D-------------------GKILATAGWDHRIRVYSWRTL----------NPLAVLK-------- 290 (323)
T ss_pred --------------C-------------------CcEEeecccCCcEEEEEeccC----------Cchhhhh--------
Confidence 2 778889999999999999999 8888888
Q ss_pred CCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 442 NRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 442 ~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
-|.+.|+++||||+.+.+|++|+|++|-+|.
T Consensus 291 ----yHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 291 ----YHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred ----hhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 8999999999999999999999999999996
No 175
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.72 E-value=1.2e-15 Score=132.85 Aligned_cols=313 Identities=14% Similarity=0.142 Sum_probs=201.8
Q ss_pred EEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEE
Q 037120 102 LDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVV 181 (489)
Q Consensus 102 ~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i 181 (489)
+.|||+|+++|+.+.- .+.|-|.++.+...- +.. ... |.-+.|..+...++.....| +.|
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql--------------f~c-ldk---i~yieW~ads~~ilC~~yk~-~~v 73 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQL--------------FLC-LDK---IVYIEWKADSCHILCVAYKD-PKV 73 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHH--------------HHH-HHH---hhheeeeccceeeeeeeecc-ceE
Confidence 4799999999999876 677788887443321 000 111 66699999988777777777 999
Q ss_pred EEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeE
Q 037120 182 SIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNS 261 (489)
Q Consensus 182 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~ 261 (489)
.+|++... .+.....+-.+++.+++|+|+|.++|.+..-|-.|.+|.+.+.+ +. .+......+..
T Consensus 74 qvwsl~Qp------------ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--~~-~~~~pK~~~kg 138 (447)
T KOG4497|consen 74 QVWSLVQP------------EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--GY-LLPHPKTNVKG 138 (447)
T ss_pred EEEEeecc------------eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--eE-EecccccCcee
Confidence 99999321 12222244567899999999998778888899999999999865 33 22223455688
Q ss_pred EEEeecCCEEEEEeC-CC--eEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccc------eeecccee
Q 037120 262 IQLHAENQIIFAAGK-HG--SIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQS------KIVSQEIH 332 (489)
Q Consensus 262 ~~~~p~~~~l~~~~~-dg--~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~------~~~~~~i~ 332 (489)
++|+|+|++.+..+. |- .+.|........++.+....-- .+.+.|+|||..++-..... ....-.+.
T Consensus 139 ~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~D----ltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k 214 (447)
T KOG4497|consen 139 YAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTID----LTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLK 214 (447)
T ss_pred EEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccc----ccCceECCCCcEEEEecchhhheeeeeeecccee
Confidence 999999999888876 21 2333322333335555544433 78999999999886533222 22346788
Q ss_pred EEEeCCCCCeEEEEEecCC--------ceEEEEe------eccc------------eeeecCCCCCCcCCC---------
Q 037120 333 SIDLDPSCSYQLAFHLDDG--------WSGVLDV------YNSR------------VSHVHCPPPAWLSDS--------- 377 (489)
Q Consensus 333 ~~~~~p~~~~~~~~~~~~~--------w~~~~~~------~~~~------------~~~~~~~~~~~~~~~--------- 377 (489)
.+.++|.++.++++..|.- |+..-.. .+.. ....+|. .|.+.+
T Consensus 215 ~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cL--sf~p~~~~a~~~~~s 292 (447)
T KOG4497|consen 215 FVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCL--SFTPTDLEAHIWEES 292 (447)
T ss_pred EEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccc--ccCCCccccCccccc
Confidence 9999999999998888743 4211000 0000 0000010 010000
Q ss_pred --------------------CccccccCCCcceeecCCcEEEEeec--CCCcEEEEeccCCCCCCeeeccCcccchhhHh
Q 037120 378 --------------------NNSADQLHLRKPSWLSTNSIYAVGSS--SDHGIHLLDFFPGSSSPSHVDYNEDIESLSER 435 (489)
Q Consensus 378 --------------------~~~~~~~~~~~~~~~~~~~~~l~sgs--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 435 (489)
+..........++|+++ ..|+++-. .-+.+-+||+... +....+.
T Consensus 293 e~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~D-s~y~aTrnd~~PnalW~Wdlq~l----------~l~avLi-- 359 (447)
T KOG4497|consen 293 ETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCD-STYAATRNDKYPNALWLWDLQNL----------KLHAVLI-- 359 (447)
T ss_pred hhhhhhhhcceeeecccCCCCCCCcccccceeeecCC-ceEEeeecCCCCceEEEEechhh----------hhhhhhh--
Confidence 00011122345677776 55666532 2247999999877 5554444
Q ss_pred hhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 436 TKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 436 ~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
...+|.+..|+|..+.++.+.....+.+|+.-.
T Consensus 360 -----------Qk~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 360 -----------QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred -----------hccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 456899999999999888888888899987543
No 176
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=4.4e-15 Score=131.06 Aligned_cols=227 Identities=14% Similarity=0.203 Sum_probs=156.5
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..++-++|++.-..+|+++.|-+|++||-.. .+... ........|+|++|-|.+...|+.|.
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~----------------Lks~sQrnvtclawRPlsaselavgC- 160 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTK----------------LKSVSQRNVTCLAWRPLSASELAVGC- 160 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCce----------------ecchhhcceeEEEeccCCcceeeeee-
Confidence 3488899999888899999999999999877 22221 11111122999999999888899888
Q ss_pred CCCEEEEEEeccCCCCC--ceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCcCceeecc
Q 037120 177 RSNVVSIYDIGYISDEP--VEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWDRRVGVLPSLELST 253 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~ 253 (489)
.+-|++|......... .........-+....|| ..|++++|.+||. .+++++ .|..|.|||..++....+. .
T Consensus 161 -r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~--~ 235 (445)
T KOG2139|consen 161 -RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLI--P 235 (445)
T ss_pred -cceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCccccc--c
Confidence 6799999884321111 00001011111122556 6999999999999 888888 7789999999998744332 2
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC-CcccceeecCCccCCCCeeEEEeCCCCcce----------eec--
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG-GRTSAPFHNHKEVCHLPLTSLKLASMLEKI----------GTL-- 320 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~-~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i----------~~~-- 320 (489)
..-+.++-+.|+||+.+++++..|+..++|.... ..+.+-..+ .+. |....|+|+|+.+ .++
T Consensus 236 ~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg-sgr----vqtacWspcGsfLLf~~sgsp~lysl~f 310 (445)
T KOG2139|consen 236 KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG-SGR----VQTACWSPCGSFLLFACSGSPRLYSLTF 310 (445)
T ss_pred cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc-CCc----eeeeeecCCCCEEEEEEcCCceEEEEee
Confidence 2357788999999999999999999999995543 322222222 334 9999999999877 000
Q ss_pred -------c--------------------ccceeeccceeEEEeCCCCCeEEEEEecCC
Q 037120 321 -------K--------------------AQSKIVSQEIHSIDLDPSCSYQLAFHLDDG 351 (489)
Q Consensus 321 -------~--------------------~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~ 351 (489)
. +.......++..++++|.|.|+++.-....
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 0 000111456789999999999988766655
No 177
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.70 E-value=8.3e-15 Score=147.72 Aligned_cols=342 Identities=15% Similarity=0.122 Sum_probs=189.6
Q ss_pred cccCCCceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..|...|..++.++. +.++++|+.||+|+||+........ |..... ++-+. .+..+.++...+.+. .
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-------~s~rS~--ltys~-~~sr~~~vt~~~~~~-~ 1112 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-------GSARSE--LTYSP-EGSRVEKVTMCGNGD-Q 1112 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-------ceeeee--EEEec-cCCceEEEEeccCCC-e
Confidence 4445556777777765 4999999999999999998732221 011111 11121 222377788877775 6
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCc-EEEEEeCCCcEEEEECCCCCcC-c
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTS-RLIASDTHGVVNIWDRRVGVLP-S 248 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~-~ 248 (489)
++.++.| |.|++.++....... ......+ ...+......|..-+|....+. .++.+..-+.|..||+++.... .
T Consensus 1113 ~Av~t~D-G~v~~~~id~~~~~~-~~~~~~r--i~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1113 FAVSTKD-GSVRVLRIDHYNVSK-RVATQVR--IPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred EEEEcCC-CeEEEEEcccccccc-ceeeeee--cccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 6666777 999999996532221 1111111 1111111223333344444443 7888888899999999986432 2
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeec
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVS 328 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~ 328 (489)
++.. ...+.|++++.+|.+..+++|+..|.+-+||+|-+..+..+.... ..+++.+..+|-...
T Consensus 1189 lk~~-~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~---~~~i~~v~~~~~~~~------------ 1252 (1431)
T KOG1240|consen 1189 LKNQ-LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPA---RAPIRHVWLCPTYPQ------------ 1252 (1431)
T ss_pred hhcC-ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcc---cCCcceEEeeccCCC------------
Confidence 2222 234789999999999999999999999999999877666655211 144777777664321
Q ss_pred cceeEEEeCCCCCeEEEEEe-cCCceEEEEeeccceeeecCCC---C--CCcCCCC-ccccccCCCcceeecCCcEEEEe
Q 037120 329 QEIHSIDLDPSCSYQLAFHL-DDGWSGVLDVYNSRVSHVHCPP---P--AWLSDSN-NSADQLHLRKPSWLSTNSIYAVG 401 (489)
Q Consensus 329 ~~i~~~~~~p~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~---~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s 401 (489)
....+..+. ..+-...+++.+|+...+.... + .+....+ ..-...-....+-.++++.++++
T Consensus 1253 -----------~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~lt 1321 (1431)
T KOG1240|consen 1253 -----------ESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLT 1321 (1431)
T ss_pred -----------CceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeee
Confidence 011111111 1111112333333222221110 0 0000000 00000111223344566889999
Q ss_pred ecCCCcEEEEeccCCCCCC---e-----e-----------eccCcccchhh-Hh-----h-----h----hcccCCcccC
Q 037120 402 SSSDHGIHLLDFFPGSSSP---S-----H-----------VDYNEDIESLS-ER-----T-----K----LKKENRFVPL 447 (489)
Q Consensus 402 gs~d~~i~vwd~~~~~~~~---~-----~-----------~~~~~~~~~~~-~~-----~-----~----~~~~~~~~~h 447 (489)
|+.|..||.||........ + . ++..+.+++.. .. . . ......-..|
T Consensus 1322 ggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H 1401 (1431)
T KOG1240|consen 1322 GGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYH 1401 (1431)
T ss_pred cCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccc
Confidence 9999999999987653220 0 0 00011111100 00 0 0 0011123579
Q ss_pred CCceEEEEeeCCC-CeEEeccCcceeEEE
Q 037120 448 SEGVTACVTHPLN-NTIVAGTKNSSLLVV 475 (489)
Q Consensus 448 ~~~V~~va~~p~~-~~i~sgs~dg~i~v~ 475 (489)
.++|+++++.... ..|++++.||.|.||
T Consensus 1402 ~d~Itdma~~~~~q~llvs~s~dG~IkiW 1430 (1431)
T KOG1240|consen 1402 HDPITDMATLKSEQPLLVSSSRDGVIKIW 1430 (1431)
T ss_pred cchhhhhhhhccCccEEEEecCCCeeeec
Confidence 9999999998655 599999999999998
No 178
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.8e-15 Score=137.40 Aligned_cols=185 Identities=16% Similarity=0.225 Sum_probs=134.5
Q ss_pred CceeEEEECCCCc-EEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 97 PGISALDFDCKGI-YLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 97 ~~V~~~~fs~~g~-~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
-.|.+.+|.|+|. .+++++.-..+++||+.+.+..... .+.++.. ..+.....+|+++ +|+..+
T Consensus 258 fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~------------~~~g~e~--~~~e~FeVShd~~-fia~~G 322 (514)
T KOG2055|consen 258 FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK------------PPYGVEE--KSMERFEVSHDSN-FIAIAG 322 (514)
T ss_pred CccceeeecCCCceEEEecccceEEEEeecccccccccc------------CCCCccc--chhheeEecCCCC-eEEEcc
Confidence 4589999999998 9999999999999999885544321 1122221 1166688899987 666667
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCC
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
.. |.|.+-...+. ..+...+ -.+.|.+++|+.+++ .|++++.+|.|.+||+++.. |+..+..
T Consensus 323 ~~-G~I~lLhakT~-----eli~s~K--------ieG~v~~~~fsSdsk-~l~~~~~~GeV~v~nl~~~~--~~~rf~D- 384 (514)
T KOG2055|consen 323 NN-GHIHLLHAKTK-----ELITSFK--------IEGVVSDFTFSSDSK-ELLASGGTGEVYVWNLRQNS--CLHRFVD- 384 (514)
T ss_pred cC-ceEEeehhhhh-----hhhheee--------eccEEeeEEEecCCc-EEEEEcCCceEEEEecCCcc--eEEEEee-
Confidence 66 99999887322 2222222 234899999999998 88888889999999999876 6666542
Q ss_pred CCce--eEEEEeecCCEEEEEeCCCeEEEEEcCC------CcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 256 HGTL--NSIQLHAENQIIFAAGKHGSIYLWDLRG------GRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 256 ~~~v--~~~~~~p~~~~l~~~~~dg~i~lwd~~~------~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
.+.| ++++.++++.++++|+..|.|.|||..+ .+.+..+...... |++++|++|.+.++
T Consensus 385 ~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~----Itsl~Fn~d~qiLA 451 (514)
T KOG2055|consen 385 DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTA----ITSLQFNHDAQILA 451 (514)
T ss_pred cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhee----eeeeeeCcchhhhh
Confidence 2333 5788889999999999999999999654 2335555544545 88888888887765
No 179
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.6e-15 Score=131.38 Aligned_cols=199 Identities=14% Similarity=0.133 Sum_probs=145.2
Q ss_pred eeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccce
Q 037120 214 LSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAP 293 (489)
Q Consensus 214 v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~ 293 (489)
..++.|++-|. +|+.|..||.|.|||+.+.. .-+.+.+|..+|+|++|+++|+.|++++.|..|.+||+..|.+++.
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~--iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFR--IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccccc--hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 78899999999 99999999999999999876 6667889999999999999999999999999999999999998888
Q ss_pred eecCCccCCCCeeEEEeCCCCcc--eeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCC
Q 037120 294 FHNHKEVCHLPLTSLKLASMLEK--IGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPP 371 (489)
Q Consensus 294 ~~~~~~~~~~~v~~l~~~~~~~~--i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 371 (489)
+.- . .||+...|+|.... +++.- ...-.-+.|++.-..++....++.- +....+ .
T Consensus 103 irf-~----spv~~~q~hp~k~n~~va~~~------~~sp~vi~~s~~~h~~Lp~d~d~dl----n~sas~--------~ 159 (405)
T KOG1273|consen 103 IRF-D----SPVWGAQWHPRKRNKCVATIM------EESPVVIDFSDPKHSVLPKDDDGDL----NSSASH--------G 159 (405)
T ss_pred EEc-c----CccceeeeccccCCeEEEEEe------cCCcEEEEecCCceeeccCCCcccc----cccccc--------c
Confidence 764 3 35999999996633 23211 1112233444311111111111100 000000 0
Q ss_pred CCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccC-CCc
Q 037120 372 AWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPL-SEG 450 (489)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~ 450 (489)
.|... +.|+++|...|.+.|+|..+. +.+..+. -. ...
T Consensus 160 ~fdr~-------------------g~yIitGtsKGkllv~~a~t~----------e~vas~r------------its~~~ 198 (405)
T KOG1273|consen 160 VFDRR-------------------GKYIITGTSKGKLLVYDAETL----------ECVASFR------------ITSVQA 198 (405)
T ss_pred cccCC-------------------CCEEEEecCcceEEEEecchh----------eeeeeee------------echhee
Confidence 11111 889999999999999999988 6665554 22 256
Q ss_pred eEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 451 VTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 451 V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
|..+-++-.+..|+.-+.|..|++|..+.
T Consensus 199 IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 199 IKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred eeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 88899999999999999999999998763
No 180
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.67 E-value=2.2e-15 Score=130.96 Aligned_cols=189 Identities=17% Similarity=0.274 Sum_probs=136.2
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccC--CCCCCceeEEEeeCCCCCEEEEEec
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLH--IPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h--~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
--+++|+|||..|.+|- ...|+|||+...-+.. +......| .+...-|.+++|+|.....++.++.
T Consensus 161 AhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c-----------~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY 228 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDC-----------PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSY 228 (406)
T ss_pred heeEEecCCCCeEeecc-cceEEEeeccCCCCCC-----------cchhhhhcccccccceeeeeeccCCCCcceeeecc
Confidence 56899999999999875 5689999995421111 10000011 1111228999999998889999998
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCcCceeeccCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
- ..+-||.-... . ....+.+|.+.|+.++|+++|+ .|++|+ .|-.|..||+|....++. .+..|
T Consensus 229 ~-q~~giy~~~~~--~----------pl~llggh~gGvThL~~~edGn-~lfsGaRk~dkIl~WDiR~~~~pv~-~L~rh 293 (406)
T KOG2919|consen 229 G-QRVGIYNDDGR--R----------PLQLLGGHGGGVTHLQWCEDGN-KLFSGARKDDKILCWDIRYSRDPVY-ALERH 293 (406)
T ss_pred c-ceeeeEecCCC--C----------ceeeecccCCCeeeEEeccCcC-eecccccCCCeEEEEeehhccchhh-hhhhh
Confidence 7 78888876211 1 2223478999999999999999 888888 678899999998766644 33344
Q ss_pred CC-cee--EEEEeecCCEEEEEeCCCeEEEEEcCC-CcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 256 HG-TLN--SIQLHAENQIIFAAGKHGSIYLWDLRG-GRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 256 ~~-~v~--~~~~~p~~~~l~~~~~dg~i~lwd~~~-~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
.+ .-. -....|++++|++|+.||.|++||+.+ +..+..+..+... ++.++++|--..++
T Consensus 294 v~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~----vNgvslnP~mpila 356 (406)
T KOG2919|consen 294 VGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDT----VNGVSLNPIMPILA 356 (406)
T ss_pred ccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccc----ccceecCcccceee
Confidence 43 222 345568999999999999999999998 6657777777777 88898888754444
No 181
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.67 E-value=4.8e-14 Score=138.66 Aligned_cols=249 Identities=18% Similarity=0.304 Sum_probs=176.1
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcc-cccCCCCCCCCCcccccccccCCCCCCceeEEEe-eCCCCC
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLY-YQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRW-NLANQD 169 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~-~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~-~~~~~~ 169 (489)
...+...|.++.|.+.+..++.++.|+.+.+|+..... .... + ..+.. ..+..+.+ ++++..
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--------~------~~~~~--~~~~~~~~~~~~~~~ 124 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKS--------L------EGLHD--SSVSKLALSSPDGNS 124 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEE--------E------eccCC--CceeeEEEECCCcce
Confidence 44566779999999999999999999999999998853 1111 1 11111 11566666 677653
Q ss_pred EEEEEec-CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC-CCcEEEEECCCCCcC
Q 037120 170 EVACAST-RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT-HGVVNIWDRRVGVLP 247 (489)
Q Consensus 170 ~l~s~~~-d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~ 247 (489)
.++..+. | +.+.+||+... . .....+..|...|..++|+|++. .+++++. |+.+++|++..+.
T Consensus 125 ~~~~~~~~d-~~~~~~~~~~~-------~----~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-- 189 (466)
T COG2319 125 ILLASSSLD-GTVKLWDLSTP-------G----KLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGK-- 189 (466)
T ss_pred EEeccCCCC-ccEEEEEecCC-------C----eEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCc--
Confidence 4555444 5 99999999330 1 11122377889999999999999 8888885 9999999999854
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEE-eCCCeEEEEEcCCCcccc-eeecCCccCCCCeeEEEeCCCCcceeeccccce
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAA-GKHGSIYLWDLRGGRTSA-PFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSK 325 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~-~~dg~i~lwd~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~ 325 (489)
.+..+..|...|.+++|+|++..++++ +.|+.|++||...+..+. .+..|... . -.
T Consensus 190 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~----~-~~----------------- 247 (466)
T COG2319 190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS----V-VS----------------- 247 (466)
T ss_pred eEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc----e-eE-----------------
Confidence 555666799999999999999844555 779999999887554433 23333211 0 00
Q ss_pred eeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCC
Q 037120 326 IVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSD 405 (489)
Q Consensus 326 ~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d 405 (489)
.|+|+ +.++++++.|
T Consensus 248 ---------~~~~~--------------------------------------------------------~~~~~~~~~d 262 (466)
T COG2319 248 ---------SFSPD--------------------------------------------------------GSLLASGSSD 262 (466)
T ss_pred ---------eECCC--------------------------------------------------------CCEEEEecCC
Confidence 11111 2355578899
Q ss_pred CcEEEEeccCCCCCCeeeccCcc-cchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 406 HGIHLLDFFPGSSSPSHVDYNED-IESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 406 ~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
+.+++||+... .. +..+. +|...|.+++|+|++..+++++.|+.+.+|..+..
T Consensus 263 ~~~~~~~~~~~----------~~~~~~~~------------~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 263 GTIRLWDLRSS----------SSLLRTLS------------GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG 316 (466)
T ss_pred CcEEEeeecCC----------CcEEEEEe------------cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC
Confidence 99999999877 22 22223 78999999999998888888999999999944433
No 182
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=2.8e-15 Score=135.12 Aligned_cols=185 Identities=13% Similarity=0.147 Sum_probs=132.4
Q ss_pred eEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCC
Q 037120 100 SALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSN 179 (489)
Q Consensus 100 ~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g 179 (489)
.+++|+.+|..|++|+.||++|||++........ ...|..+ |.++.|+||++ +|++-+.|
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~--------------e~~~~~e---V~DL~FS~dgk-~lasig~d-- 207 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILE--------------EIAHHAE---VKDLDFSPDGK-FLASIGAD-- 207 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhh--------------hHhhcCc---cccceeCCCCc-EEEEecCC--
Confidence 7899999999999999999999999887444332 2456666 88899999997 66666644
Q ss_pred EEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCC---Cc-EEEEEeCCCcEEEEECCCCCc----Cceee
Q 037120 180 VVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVN---TS-RLIASDTHGVVNIWDRRVGVL----PSLEL 251 (489)
Q Consensus 180 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~-~l~s~s~dg~i~iwd~~~~~~----~~~~~ 251 (489)
..+||+++.+..- ....+ .+-......+.|..++ .. +++....-+.|+.||+...+. +..+.
T Consensus 208 ~~~VW~~~~g~~~--a~~t~--------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~ 277 (398)
T KOG0771|consen 208 SARVWSVNTGAAL--ARKTP--------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKK 277 (398)
T ss_pred ceEEEEeccCchh--hhcCC--------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhh
Confidence 9999999655211 11111 1122355667787766 31 222333556777777665433 11111
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee-cCCccCCCCeeEEEeCCCCcceee
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH-NHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~-~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
. .....|++++.+++|++++.|+.||.|-|++..+.+.++.++ .|... |+.|.|+||.+++++
T Consensus 278 ~-~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~----VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 278 I-KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGF----VTGLTFSPDSRYLAS 341 (398)
T ss_pred h-hccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheee----eeeEEEcCCcCcccc
Confidence 1 223579999999999999999999999999999988866554 77777 999999999888875
No 183
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.66 E-value=2.8e-16 Score=152.08 Aligned_cols=277 Identities=16% Similarity=0.186 Sum_probs=179.9
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|.+.|.|..|+..|.++++|+.|..|+||..++..+... +.||... |+.++.+..+. ++
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs--------------~rGhs~d---itdlavs~~n~-~i 247 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLAS--------------CRGHSGD---ITDLAVSSNNT-MI 247 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhcc--------------CCCCccc---cchhccchhhh-hh
Confidence 566788899999999999999999999999999988666652 3677777 88899887763 78
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC----
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP---- 247 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---- 247 (489)
++++.| ..|++|-+..+ .+ .. .+.+|++.|++|+|+|-- +.+.||++++||.+-....
T Consensus 248 aaaS~D-~vIrvWrl~~~--~p------vs----vLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~pr 309 (1113)
T KOG0644|consen 248 AAASND-KVIRVWRLPDG--AP------VS----VLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPR 309 (1113)
T ss_pred hhcccC-ceEEEEecCCC--ch------HH----HHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCC
Confidence 888888 99999999433 11 22 238899999999999854 6789999999999821100
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce-eecccccee
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI-GTLKAQSKI 326 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i-~~~~~~~~~ 326 (489)
..+. ....-+.++.|..++.-+++++.|+.-+.|.+..... +... +.-+.++.+...+ .+..
T Consensus 310 p~~~--~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~----lif~t~ssd~~~~~~~ar----- 372 (1113)
T KOG0644|consen 310 PLKF--TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------RSNL----LIFVTRSSDLSSIVVTAR----- 372 (1113)
T ss_pred CCCc--ccccceeeeeccccccccccccCCcccccchhhHhhh------hccc----eEEEeccccccccceeee-----
Confidence 1111 1235567888888888899999999988887664221 1111 1112222222211 1100
Q ss_pred eccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCC
Q 037120 327 VSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDH 406 (489)
Q Consensus 327 ~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~ 406 (489)
..+.. .+++.+.|...+.... . .+.. -.+.++|-+..+..+++.||
T Consensus 373 --~~~~~--------------------~vwnl~~g~l~H~l~g---h-sd~~--------yvLd~Hpfn~ri~msag~dg 418 (1113)
T KOG0644|consen 373 --NDHRL--------------------CVWNLYTGQLLHNLMG---H-SDEV--------YVLDVHPFNPRIAMSAGYDG 418 (1113)
T ss_pred --eeeEe--------------------eeeecccchhhhhhcc---c-ccce--------eeeeecCCCcHhhhhccCCC
Confidence 00000 1222333222111100 0 0000 00123344477888999999
Q ss_pred cEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 407 GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 407 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
...|||+-.+ ..++... .+| ..+...+|+++|..|+....-|.+.++..
T Consensus 419 st~iwdi~eg----------~pik~y~-----------~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 419 STIIWDIWEG----------IPIKHYF-----------IGH-GKLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred ceEeeecccC----------Ccceeee-----------ccc-ceeeccccCCCCceEecCCCCCceEEecc
Confidence 9999999887 2222211 254 56778899999999999999999999743
No 184
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=2.3e-13 Score=129.52 Aligned_cols=285 Identities=8% Similarity=0.045 Sum_probs=153.8
Q ss_pred EEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCC
Q 037120 111 LVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYIS 190 (489)
Q Consensus 111 la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~ 190 (489)
+++...++.|.+|++.+..... .... ..+... ...++++|+++.+++++..+ +.|.+|++.. .
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~---------~~~~---~~~~~~---~~~l~~spd~~~lyv~~~~~-~~i~~~~~~~-~ 67 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALT---------LLQV---VDVPGQ---VQPMVISPDKRHLYVGVRPE-FRVLSYRIAD-D 67 (330)
T ss_pred EEEcCCCCCEEEEEECCCCcee---------eeeE---EecCCC---CccEEECCCCCEEEEEECCC-CcEEEEEECC-C
Confidence 3444668999999996421110 0000 001122 55589999987555555545 8999999942 1
Q ss_pred CCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCcC--ceeeccCCCCceeEEEEeec
Q 037120 191 DEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWDRRVGVLP--SLELSTGSHGTLNSIQLHAE 267 (489)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~--~~~~~~~h~~~v~~~~~~p~ 267 (489)
. .+...... ........++|+|+++ .+++++ .++.|.+||+.+.... .+... .+.....+++++|+
T Consensus 68 g----~l~~~~~~-----~~~~~p~~i~~~~~g~-~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~ 136 (330)
T PRK11028 68 G----ALTFAAES-----PLPGSPTHISTDHQGR-FLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPD 136 (330)
T ss_pred C----ceEEeeee-----cCCCCceEEEECCCCC-EEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCC
Confidence 1 11111111 1122456899999999 666655 5899999999743211 22222 22344677899999
Q ss_pred CCEEEEEeC-CCeEEEEEcCCCcccce-----eecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCC
Q 037120 268 NQIIFAAGK-HGSIYLWDLRGGRTSAP-----FHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCS 341 (489)
Q Consensus 268 ~~~l~~~~~-dg~i~lwd~~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~ 341 (489)
++++++++. ++.|.+||+.+...+.. .....+ .....+.|+| +++
T Consensus 137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g---~~p~~~~~~p--------------------------dg~ 187 (330)
T PRK11028 137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG---AGPRHMVFHP--------------------------NQQ 187 (330)
T ss_pred CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC---CCCceEEECC--------------------------CCC
Confidence 999987776 79999999987332211 010000 0123444444 444
Q ss_pred eEEEEEecCCceEEEEeec--cceee---ecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCC
Q 037120 342 YQLAFHLDDGWSGVLDVYN--SRVSH---VHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPG 416 (489)
Q Consensus 342 ~~~~~~~~~~w~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~ 416 (489)
++++....++...++++.. +.... +...+...... .....+.++|++..++++...++.|.+|++...
T Consensus 188 ~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~-------~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 188 YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT-------RWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC-------ccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 4444433222112222221 11100 00010000000 001124566777766666667889999999654
Q ss_pred CCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccC-cceeEEEecc
Q 037120 417 SSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTK-NSSLLVVSQK 478 (489)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~-dg~i~v~~~~ 478 (489)
.....+. ... .-......++++|++++|+++.. +++|.||...
T Consensus 261 ----------~~~~~~~--~~~-------~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 261 ----------GSVLSFE--GHQ-------PTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ----------CCeEEEe--EEE-------eccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 2111111 000 00123457899999998877665 8999999764
No 185
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=2.5e-14 Score=134.10 Aligned_cols=245 Identities=14% Similarity=0.204 Sum_probs=160.6
Q ss_pred ccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcE
Q 037120 147 KHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSR 226 (489)
Q Consensus 147 ~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 226 (489)
.+.||++. |.++...|.+. .|++|+.| |+|+||.+.++ ..+.... +. ..|.+|+|+|.+...
T Consensus 395 vyrGHtg~---Vr~iSvdp~G~-wlasGsdD-GtvriWEi~Tg-----Rcvr~~~-----~d---~~I~~vaw~P~~~~~ 456 (733)
T KOG0650|consen 395 VYRGHTGL---VRSISVDPSGE-WLASGSDD-GTVRIWEIATG-----RCVRTVQ-----FD---SEIRSVAWNPLSDLC 456 (733)
T ss_pred eEeccCCe---EEEEEecCCcc-eeeecCCC-CcEEEEEeecc-----eEEEEEe-----ec---ceeEEEEecCCCCce
Confidence 34678888 99999999875 88999988 99999999443 3332222 23 389999999998866
Q ss_pred EEEEeCCCcEEEEECCCCC------------------cC-----------------ceeeccCCCCceeEEEEeecCCEE
Q 037120 227 LIASDTHGVVNIWDRRVGV------------------LP-----------------SLELSTGSHGTLNSIQLHAENQII 271 (489)
Q Consensus 227 l~s~s~dg~i~iwd~~~~~------------------~~-----------------~~~~~~~h~~~v~~~~~~p~~~~l 271 (489)
++++..+..+.|-+..-|. .+ -+.....|...|..+.|+..|.||
T Consensus 457 vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYl 536 (733)
T KOG0650|consen 457 VLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYL 536 (733)
T ss_pred eEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceE
Confidence 6666656556655432220 00 011222567789999999999999
Q ss_pred EEEeC---CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEe
Q 037120 272 FAAGK---HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHL 348 (489)
Q Consensus 272 ~~~~~---dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~ 348 (489)
++... ...|.|.++...+....|....+. |.++.|+|. ..++++++.
T Consensus 537 atV~~~~~~~~VliHQLSK~~sQ~PF~kskG~----vq~v~FHPs--------------------------~p~lfVaTq 586 (733)
T KOG0650|consen 537 ATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGL----VQRVKFHPS--------------------------KPYLFVATQ 586 (733)
T ss_pred EEeccCCCcceEEEEecccccccCchhhcCCc----eeEEEecCC--------------------------CceEEEEec
Confidence 98865 457888898877666555444444 666666554 444444443
Q ss_pred cCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcc
Q 037120 349 DDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNED 428 (489)
Q Consensus 349 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~ 428 (489)
.. .++.++......+..-...-|... ++-+|.|.. ++.|+.|+.+..+|+.-.. +.
T Consensus 587 ~~--vRiYdL~kqelvKkL~tg~kwiS~------------msihp~GDn-li~gs~d~k~~WfDldlss---------kP 642 (733)
T KOG0650|consen 587 RS--VRIYDLSKQELVKKLLTGSKWISS------------MSIHPNGDN-LILGSYDKKMCWFDLDLSS---------KP 642 (733)
T ss_pred cc--eEEEehhHHHHHHHHhcCCeeeee------------eeecCCCCe-EEEecCCCeeEEEEcccCc---------ch
Confidence 22 123333333322221111112111 233344444 5556899999999997551 34
Q ss_pred cchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEE
Q 037120 429 IESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~ 475 (489)
.+.+. -|...|++|+||+..+.+|+|+.||++.||
T Consensus 643 yk~lr------------~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 643 YKTLR------------LHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred hHHhh------------hhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 45555 799999999999999999999999999996
No 186
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1e-13 Score=135.81 Aligned_cols=311 Identities=10% Similarity=0.079 Sum_probs=188.1
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
++|.+++|.++++|+|..||.|.||.--.... .......+.=|..+ |.+++|+++|. .|.+|+..
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~----------~~~t~t~lHWH~~~---V~~L~fS~~G~-~LlSGG~E- 272 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSD----------DSETCTLLHWHHDE---VNSLSFSSDGA-YLLSGGRE- 272 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEecccccc----------ccccceEEEecccc---cceeEEecCCc-eEeecccc-
Confidence 89999999999999999999999996433100 01111111115556 99999999997 66677777
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-ceeecc----
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SLELST---- 253 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~---- 253 (489)
|.+-+|.+.++. +.+...+ ..+|..+.++||+. +.+....|+.|.+....+.... .+..+.
T Consensus 273 ~VLv~Wq~~T~~----------kqfLPRL---gs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~ 338 (792)
T KOG1963|consen 273 GVLVLWQLETGK----------KQFLPRL---GSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP 338 (792)
T ss_pred eEEEEEeecCCC----------ccccccc---CCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCc
Confidence 999999995543 1122222 24899999999999 7777888999999876443211 111111
Q ss_pred ----CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCC-----c--cCCCCeeEEEeCCCCcceeeccc
Q 037120 254 ----GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHK-----E--VCHLPLTSLKLASMLEKIGTLKA 322 (489)
Q Consensus 254 ----~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~-----~--~~~~~v~~l~~~~~~~~i~~~~~ 322 (489)
...+-.+.++++|.-+.++-.+..|.|.+||+-+.+.++.+.... + ....++++++.+..|..++++..
T Consensus 339 ~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~ 418 (792)
T KOG1963|consen 339 STKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEA 418 (792)
T ss_pred cccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeee
Confidence 224556788999976777777889999999999877655553111 0 00134677777777777766443
Q ss_pred cceeec--cceeEEE---eCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcE
Q 037120 323 QSKIVS--QEIHSID---LDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSI 397 (489)
Q Consensus 323 ~~~~~~--~~i~~~~---~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (489)
...... .....+. +.++.+. |.-.-.+...|....... ++.... ...
T Consensus 419 ~~d~~~~~~~e~~LKFW~~n~~~kt---------~~L~T~I~~PH~~~~vat--~~~~~~-----------------rs~ 470 (792)
T KOG1963|consen 419 RIDKFNFFDGEVSLKFWQYNPNSKT---------FILNTKINNPHGNAFVAT--IFLNPT-----------------RSV 470 (792)
T ss_pred eehhhhccCceEEEEEEEEcCCcce---------eEEEEEEecCCCceeEEE--EEecCc-----------------ccc
Confidence 321111 1112222 2222111 321222222222111110 122221 133
Q ss_pred EEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 398 YAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 398 ~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
.+++++.||.++||-+... +.+.... ..+.....---|..++++++|+.+|. +++.|.+++|.+|.-
T Consensus 471 ~~vta~~dg~~KiW~~~~~----------~n~~k~~--s~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 471 RCVTASVDGDFKIWVFTDD----------SNIYKKS--SNWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDY 537 (792)
T ss_pred eeEEeccCCeEEEEEEecc----------cccCcCc--cceEEeeeeccccCcccchhhcCCCc-EEEEecCCEEEEecC
Confidence 7899999999999999665 2222211 11100000002678899999999995 667778899999977
Q ss_pred cc
Q 037120 478 KQ 479 (489)
Q Consensus 478 ~~ 479 (489)
.+
T Consensus 538 ~~ 539 (792)
T KOG1963|consen 538 DT 539 (792)
T ss_pred CC
Confidence 66
No 187
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=7.7e-14 Score=120.75 Aligned_cols=125 Identities=12% Similarity=0.189 Sum_probs=91.7
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec--CCCcEEEEEeCCCc
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA--VNTSRLIASDTHGV 235 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~s~dg~ 235 (489)
|.++.|.+.|. .+++++.| ++|+|||.+...+ .......+ ..|.+.|..|.|-+ -|+ .+++++.|++
T Consensus 16 ihdVs~D~~GR-RmAtCSsD-q~vkI~d~~~~s~----~W~~Ts~W----rah~~Si~rV~WAhPEfGq-vvA~cS~Drt 84 (361)
T KOG2445|consen 16 IHDVSFDFYGR-RMATCSSD-QTVKIWDSTSDSG----TWSCTSSW----RAHDGSIWRVVWAHPEFGQ-VVATCSYDRT 84 (361)
T ss_pred eeeeeecccCc-eeeeccCC-CcEEEEeccCCCC----ceEEeeeE----EecCCcEEEEEecCccccc-eEEEEecCCc
Confidence 99999999996 77777777 9999999844322 22222233 66999999999964 356 9999999999
Q ss_pred EEEEECCCC-----C--cCceeeccCCCCceeEEEEeec--CCEEEEEeCCCeEEEEEcCCCcccce
Q 037120 236 VNIWDRRVG-----V--LPSLELSTGSHGTLNSIQLHAE--NQIIFAAGKHGSIYLWDLRGGRTSAP 293 (489)
Q Consensus 236 i~iwd~~~~-----~--~~~~~~~~~h~~~v~~~~~~p~--~~~l~~~~~dg~i~lwd~~~~~~~~~ 293 (489)
+.||.-... . ......+....+.|+.+.|.|. |-.+++++.||++|||+....-.+..
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~ 151 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ 151 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc
Confidence 999975211 1 1122234466789999999994 66788888899999999876443333
No 188
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=2.4e-14 Score=125.61 Aligned_cols=195 Identities=16% Similarity=0.243 Sum_probs=139.1
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecC-CCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAV-NTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
.++++-.+ |+|++||...+ .. ...+ .+|...++.++|... +.+.+.+|+.||+|++||+|+..+..
T Consensus 42 ~vav~lSn-gsv~lyd~~tg-----~~---l~~f----k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a 108 (376)
T KOG1188|consen 42 AVAVSLSN-GSVRLYDKGTG-----QL---LEEF----KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA 108 (376)
T ss_pred eEEEEecC-CeEEEEeccch-----hh---hhee----cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh
Confidence 45566556 99999999332 22 2223 778888899999875 66689999999999999999875543
Q ss_pred eeeccCCC-CceeEEEEeecCCEEEEEeC----CCeEEEEEcCCCcc-cceee-cCCccCCCCeeEEEeCCCCcceeecc
Q 037120 249 LELSTGSH-GTLNSIQLHAENQIIFAAGK----HGSIYLWDLRGGRT-SAPFH-NHKEVCHLPLTSLKLASMLEKIGTLK 321 (489)
Q Consensus 249 ~~~~~~h~-~~v~~~~~~p~~~~l~~~~~----dg~i~lwd~~~~~~-~~~~~-~~~~~~~~~v~~l~~~~~~~~i~~~~ 321 (489)
.....++. .+..|++.+..++.+.+|.. |-.|.+||+|..+. +..+. .|..- |++|+|+|
T Consensus 109 ~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DD----VT~lrFHP--------- 175 (376)
T KOG1188|consen 109 RISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDD----VTQLRFHP--------- 175 (376)
T ss_pred heeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCc----ceeEEecC---------
Confidence 33444555 57788888888888777754 77899999998765 44433 45444 55555444
Q ss_pred ccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEe
Q 037120 322 AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVG 401 (489)
Q Consensus 322 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 401 (489)
+. ..+|++
T Consensus 176 -----------------~~-------------------------------------------------------pnlLlS 183 (376)
T KOG1188|consen 176 -----------------SD-------------------------------------------------------PNLLLS 183 (376)
T ss_pred -----------------CC-------------------------------------------------------CCeEEe
Confidence 22 557889
Q ss_pred ecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCC-CeEEeccCcceeEEEecccc
Q 037120 402 SSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLN-NTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 402 gs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~-~~i~sgs~dg~i~v~~~~~~ 480 (489)
||.||-|.|+|+.... +.+.++..+ .|...|..+.|+..+ +.|.+-+..++..+|--+..
T Consensus 184 GSvDGLvnlfD~~~d~------EeDaL~~vi-------------N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 184 GSVDGLVNLFDTKKDN------EEDALLHVI-------------NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred ecccceEEeeecCCCc------chhhHHHhh-------------cccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 9999999999998661 000122222 588889999999877 46777888899999876665
Q ss_pred c
Q 037120 481 C 481 (489)
Q Consensus 481 ~ 481 (489)
+
T Consensus 245 ~ 245 (376)
T KOG1188|consen 245 S 245 (376)
T ss_pred C
Confidence 5
No 189
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.63 E-value=7.5e-16 Score=149.23 Aligned_cols=242 Identities=17% Similarity=0.248 Sum_probs=161.0
Q ss_pred cccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCC
Q 037120 144 DQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVN 223 (489)
Q Consensus 144 ~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 223 (489)
.+..+.+|... |.|+.|...+. .+++|++| ..|+||.+... .+.....||...|+.++.+..+
T Consensus 182 ~ikrLlgH~na---Vyca~fDrtg~-~Iitgsdd-~lvKiwS~et~------------~~lAs~rGhs~ditdlavs~~n 244 (1113)
T KOG0644|consen 182 NIKRLLGHRNA---VYCAIFDRTGR-YIITGSDD-RLVKIWSMETA------------RCLASCRGHSGDITDLAVSSNN 244 (1113)
T ss_pred HHHHHHhhhhh---eeeeeeccccc-eEeecCcc-ceeeeeeccch------------hhhccCCCCccccchhccchhh
Confidence 34445678888 99999999885 78888887 99999997321 1233448999999999998877
Q ss_pred CcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCC
Q 037120 224 TSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHL 303 (489)
Q Consensus 224 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~ 303 (489)
. ++++++.|..|++|-+..+. .+..+.+|++.|++++|+|-. +.+.||++++||.+-.-.++.-.........
T Consensus 245 ~-~iaaaS~D~vIrvWrl~~~~--pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~ 317 (1113)
T KOG0644|consen 245 T-MIAAASNDKVIRVWRLPDGA--PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKD 317 (1113)
T ss_pred h-hhhhcccCceEEEEecCCCc--hHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCccccc
Confidence 7 99999999999999999877 666788999999999999965 6677999999999821111110000000001
Q ss_pred CeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCce-EEEEeeccceeeecCCCCCCcCCCCcccc
Q 037120 304 PLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWS-GVLDVYNSRVSHVHCPPPAWLSDSNNSAD 382 (489)
Q Consensus 304 ~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (489)
.+.++.|...+..+.+...........+..++ |. ..+... ....+
T Consensus 318 ~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~----------------~~~~~lif~------------t~ssd------ 363 (1113)
T KOG0644|consen 318 LVDSILFENNGDRFLTGSRDGEARNHEFEQLA----------------WRSNLLIFV------------TRSSD------ 363 (1113)
T ss_pred ceeeeeccccccccccccCCcccccchhhHhh----------------hhccceEEE------------ecccc------
Confidence 13333333333322221111100000000000 10 000000 00001
Q ss_pred ccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC-
Q 037120 383 QLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN- 461 (489)
Q Consensus 383 ~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~- 461 (489)
-..+.+++-.+..+++|++.++ .++..+. +|.+.+..+.+||.+.
T Consensus 364 ------------~~~~~~~ar~~~~~~vwnl~~g----------~l~H~l~------------ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 364 ------------LSSIVVTARNDHRLCVWNLYTG----------QLLHNLM------------GHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred ------------ccccceeeeeeeEeeeeecccc----------hhhhhhc------------ccccceeeeeecCCCcH
Confidence 1456677778888999999999 8888888 9999999999999997
Q ss_pred eEEeccCcceeEEEec
Q 037120 462 TIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 462 ~i~sgs~dg~i~v~~~ 477 (489)
+..+++.||...||+-
T Consensus 410 i~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDI 425 (1113)
T ss_pred hhhhccCCCceEeeec
Confidence 5568899999999864
No 190
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.62 E-value=1.1e-12 Score=128.81 Aligned_cols=288 Identities=17% Similarity=0.254 Sum_probs=191.2
Q ss_pred cccCCCceeEEEECCCCcEEEEEec-CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATR-SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~-dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..+...|.+++|+|++.++++++. |+.+++|+........ .. .+|... |.+++|+|++..+
T Consensus 151 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~------~~~~~~---v~~~~~~~~~~~~ 213 (466)
T COG2319 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS--------TL------AGHTDP---VSSLAFSPDGGLL 213 (466)
T ss_pred EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE--------ee------ccCCCc---eEEEEEcCCcceE
Confidence 5556677999999999999999986 9999999998733322 11 224445 9999999887645
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
+++++.| +.|++||.... ..+.. .+.+|...+ ...|++++. .+++++.|+.+++||++..... +.
T Consensus 214 ~~~~~~d-~~i~~wd~~~~-----~~~~~------~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~-~~ 278 (466)
T COG2319 214 IASGSSD-GTIRLWDLSTG-----KLLRS------TLSGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSSL-LR 278 (466)
T ss_pred EEEecCC-CcEEEEECCCC-----cEEee------ecCCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCcE-EE
Confidence 5554666 99999987411 11111 236677775 448999996 8889999999999999976542 22
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee--cCCccCCCCeeEEEeCCCC-cceeeccccceee
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH--NHKEVCHLPLTSLKLASML-EKIGTLKAQSKIV 327 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~--~~~~~~~~~v~~l~~~~~~-~~i~~~~~~~~~~ 327 (489)
....|...+.++.|+|++..+++++.|+.+++||..+........ .|... +..+.| +.. ..+....
T Consensus 279 ~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~------ 347 (466)
T COG2319 279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP----VSSLSF-SPDGSLLVSGG------ 347 (466)
T ss_pred EEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCc----eEEEEE-CCCCCEEEEee------
Confidence 335788999999999999999998889999999998877655554 55544 777777 422 1221100
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEE-eecCCC
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAV-GSSSDH 406 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sgs~d~ 406 (489)
..+ ..+......... .......... .....+.+ . ...+ .+..++
T Consensus 348 ---------~~d-~~~~~~~~~~~~-~~~~~~~~~~----------------------~~~~~~~~-~-~~~~~~~~~~~ 392 (466)
T COG2319 348 ---------SDD-GTIRLWDLRTGK-PLKTLEGHSN----------------------VLSVSFSP-D-GRVVSSGSTDG 392 (466)
T ss_pred ---------cCC-CcEEeeecCCCc-eeEEecCCce----------------------EEEEEECC-C-CCEEEEecCCC
Confidence 011 000001111000 0000000000 11223333 3 2333 378999
Q ss_pred cEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 407 GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 407 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
.+.+|+.... ....... .+...+....+.+.+..+++++.++.+.+|..+.
T Consensus 393 ~~~~~~~~~~----------~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 393 TVRLWDLSTG----------SLLRNLD------------GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ceEEEecccC----------eeeeecc------------CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 9999999887 5544433 2227899999999999999999999999998776
No 191
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.61 E-value=8.1e-14 Score=119.67 Aligned_cols=194 Identities=16% Similarity=0.157 Sum_probs=138.1
Q ss_pred CCCceeEEEECCCC-----cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCccccccccc--CCCCCCceeEEEeeCCC
Q 037120 95 GKPGISALDFDCKG-----IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLL--HIPLPQQLDAVRWNLAN 167 (489)
Q Consensus 95 ~~~~V~~~~fs~~g-----~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~--h~~~~~~V~~v~~~~~~ 167 (489)
+.=.++.+-|.|+. ++||+.+ -.+|+|.+...+.. ...+..+.. ......++++..|+...
T Consensus 95 ~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~----------~~~~~~L~~~kns~~~aPlTSFDWne~d 162 (364)
T KOG0290|consen 95 HPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESR----------VELQSVLNNNKNSEFCAPLTSFDWNEVD 162 (364)
T ss_pred CCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCc----------eehhhhhccCcccccCCcccccccccCC
Confidence 33458889999985 4666654 36999998752111 111111111 11222349999999998
Q ss_pred CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC
Q 037120 168 QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP 247 (489)
Q Consensus 168 ~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 247 (489)
.+++.+++-| -+..|||+..+... ....++..|...|.+|+|...+..+|++++.||.|+++|+|.-+..
T Consensus 163 p~~igtSSiD-TTCTiWdie~~~~~---------~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS 232 (364)
T KOG0290|consen 163 PNLIGTSSID-TTCTIWDIETGVSG---------TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS 232 (364)
T ss_pred cceeEeeccc-CeEEEEEEeecccc---------ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc
Confidence 8899999999 99999999543111 1122346799999999999988889999999999999999986654
Q ss_pred ceeeccCC-CCceeEEEEeecCCEEEEE-eC-CCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCC
Q 037120 248 SLELSTGS-HGTLNSIQLHAENQIIFAA-GK-HGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASML 314 (489)
Q Consensus 248 ~~~~~~~h-~~~v~~~~~~p~~~~l~~~-~~-dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~ 314 (489)
.+-..... ..+..-++|++....+++. .. ...|.|.|+|.... +..+.+|+.. |+.++|.|..
T Consensus 233 TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~----VNgIaWaPhS 299 (364)
T KOG0290|consen 233 TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQAS----VNGIAWAPHS 299 (364)
T ss_pred eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCccc----ccceEecCCC
Confidence 33222222 5678889999877655544 33 56799999998644 8889999988 9999999865
No 192
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.60 E-value=1.1e-13 Score=120.84 Aligned_cols=147 Identities=22% Similarity=0.347 Sum_probs=109.0
Q ss_pred eeEEEeeC----CCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC---cEEEEE
Q 037120 158 LDAVRWNL----ANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT---SRLIAS 230 (489)
Q Consensus 158 V~~v~~~~----~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~~l~s~ 230 (489)
|..++|++ +....+++++ .+.+.+|...... ....++.... ..|......++|+-+-. -+++.+
T Consensus 41 I~gv~fN~~~~~~e~~vfatvG--~~rvtiy~c~~d~--~ir~lq~y~D-----~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 41 IFGVAFNSFLGCDEPQVFATVG--GNRVTIYECPGDG--GIRLLQSYAD-----EDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred cceeeeehhcCCCCCceEEEeC--CcEEEEEEECCcc--ceeeeeeccC-----CCCCcceEEEEEEecCCCCCeeEEee
Confidence 77799984 3445778887 5699999984322 1123322221 45777888899976432 278888
Q ss_pred eCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecC-CEEEEEeCCCeEEEEEcCCCcccceee---cCCccCCCCee
Q 037120 231 DTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAEN-QIIFAAGKHGSIYLWDLRGGRTSAPFH---NHKEVCHLPLT 306 (489)
Q Consensus 231 s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~---~~~~~~~~~v~ 306 (489)
+.-|.|+|.|+.+++ +.+.+.+|...|+.+.++|+. +++++++.|..||+|++++..++..|. +|.+. |-
T Consensus 112 G~~GvIrVid~~~~~--~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde----VL 185 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQ--CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE----VL 185 (385)
T ss_pred cceeEEEEEecchhh--hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc----EE
Confidence 899999999999877 788888999999999999986 467777889999999999999877664 55555 66
Q ss_pred EEEeCCCCcceee
Q 037120 307 SLKLASMLEKIGT 319 (489)
Q Consensus 307 ~l~~~~~~~~i~~ 319 (489)
++.|+++|.+|++
T Consensus 186 SvD~~~~gd~i~S 198 (385)
T KOG1034|consen 186 SVDFSLDGDRIAS 198 (385)
T ss_pred EEEEcCCCCeeec
Confidence 6666666665554
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=9.8e-13 Score=116.84 Aligned_cols=240 Identities=12% Similarity=0.155 Sum_probs=161.9
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCC-CCCCceeEEEeeCCCCCEEEEEe
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHI-PLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~-~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
..+..+.|+.+...|..|+.|| .++|..+..... +|. .++..|.-+-|+.. +++..+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~------------------~~~~~~~~~IvEmLFSSS---LvaiV~ 63 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC------------------FSKDTEGVSIVEMLFSSS---LVAIVS 63 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHh------------------hcccCCCeEEEEeecccc---eeEEEe
Confidence 3477778999999999999998 577877662211 111 11222555666654 444433
Q ss_pred -cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-ceeecc
Q 037120 176 -TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SLELST 253 (489)
Q Consensus 176 -~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~ 253 (489)
.+.+.+++++.... ..+-... -...|.++.++.+ .|+.+=.+ .|+|||++..+.. .+....
T Consensus 64 ~~qpr~Lkv~~~Kk~-----~~ICe~~--------fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~~MklLhTI~t~~ 126 (391)
T KOG2110|consen 64 IKQPRKLKVVHFKKK-----TTICEIF--------FPTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKLLHTIETTP 126 (391)
T ss_pred cCCCceEEEEEcccC-----ceEEEEe--------cCCceEEEEEccc---eEEEEEcc-cEEEEecccceeehhhhccC
Confidence 33356888888321 2222111 1237889988753 56666644 4999999987622 222222
Q ss_pred CCCCceeEEEEeecCCEEEEEeC--CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGK--HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~--dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
.+...+.++++++.+.+++.-+. .|.|.|||+.+.+.+..+..|.+. +.+++|+++|.+
T Consensus 127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~----lAalafs~~G~l--------------- 187 (391)
T KOG2110|consen 127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP----LAALAFSPDGTL--------------- 187 (391)
T ss_pred CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc----eeEEEECCCCCE---------------
Confidence 45566777777777778877655 899999999999999999999977 888887776544
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCC-cEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDH-GIHL 410 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~-~i~v 410 (489)
++++|+.| .|||
T Consensus 188 -------------------------------------------------------------------lATASeKGTVIRV 200 (391)
T KOG2110|consen 188 -------------------------------------------------------------------LATASEKGTVIRV 200 (391)
T ss_pred -------------------------------------------------------------------EEEeccCceEEEE
Confidence 44455555 4677
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccccc
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~ 481 (489)
+.+..+ +.+.++... -....|.+++|||++.+|++.|..++|.||.-++..
T Consensus 201 f~v~~G----------~kl~eFRRG----------~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 201 FSVPEG----------QKLYEFRRG----------TYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEcCCc----------cEeeeeeCC----------ceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 777777 555554310 123468999999999999999999999999877665
No 194
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.60 E-value=3.3e-13 Score=131.96 Aligned_cols=241 Identities=16% Similarity=0.166 Sum_probs=149.2
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC---ce-eeccC
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP---SL-ELSTG 254 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~-~~~~~ 254 (489)
+.+.||++... ..|...+.. ...|.+++|+|..+++++.|..+|+|.+||++.+... .+ .....
T Consensus 222 ~~~~vW~~~~p-~~Pe~~~~~-----------~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~s 289 (555)
T KOG1587|consen 222 GVLLVWSLKNP-NTPELVLES-----------PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVS 289 (555)
T ss_pred ceEEEEecCCC-CCceEEEec-----------CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccccccc
Confidence 57999999544 333222222 3489999999999989999999999999999987652 11 12337
Q ss_pred CCCceeEEEEeecCCE--EEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 255 SHGTLNSIQLHAENQI--IFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~--l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
|..++..+.|..+-.. +++++.||.|..|+++.... ...+...... + ..........+
T Consensus 290 h~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~----------~---------~~~~~~~~~~~ 350 (555)
T KOG1587|consen 290 HSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK----------H---------KGQQSSKAVGA 350 (555)
T ss_pred CCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccc----------c---------cccccccccce
Confidence 8899999999776555 99999999999999887544 1111110000 0 00000112234
Q ss_pred eEEEeCCCCCeEEEEEecCCce--EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWS--GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIH 409 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~ 409 (489)
+.+.|.+.....+..+.+.+.. ....-+....... +............+..+.+.|-+..++++++ |-+++
T Consensus 351 t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~------~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vr 423 (555)
T KOG1587|consen 351 TSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVS------YKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVR 423 (555)
T ss_pred eeEeeccCCCceEEEEcCCcEEEEEeccCCccccccc------ccccccccccCcceEeeecCCCccceeeeec-cceeE
Confidence 5566666665555555555421 0111110000000 0001001111133455666777777777776 99999
Q ss_pred EEecc-CCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC-eEEeccCcceeEEEeccc
Q 037120 410 LLDFF-PGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN-TIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 410 vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~-~i~sgs~dg~i~v~~~~~ 479 (489)
||... .. ..+..+. .+.+.|++++|+|..+ .|+++..||.|.+|.--+
T Consensus 424 iWs~~~~~----------~Pl~~~~------------~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 424 IWSEDVIA----------SPLLSLD------------SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred eccccCCC----------Ccchhhh------------hccceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 99876 33 3344444 6777899999999996 889999999999996543
No 195
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.60 E-value=1.8e-13 Score=126.74 Aligned_cols=172 Identities=15% Similarity=0.163 Sum_probs=125.8
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
..+|...|.|-.|+|||.-|++++.||.|++|.-..+-... +...... |.|++|.|++..++
T Consensus 100 v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRSt---------l~Q~~~~---------v~c~~W~p~S~~vl 161 (737)
T KOG1524|consen 100 ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRST---------VVQNEES---------IRCARWAPNSNSIV 161 (737)
T ss_pred hhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHH---------HhhcCce---------eEEEEECCCCCceE
Confidence 34566679999999999999999999999999876521111 1111112 99999999998888
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
.+.+ +.+.|=-+.... .. . .+ ..|.+-|.++.|++..+ ++++|++|...++||..- . .+..
T Consensus 162 ~c~g---~h~~IKpL~~n~----k~---i-~W----kAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~G-~--~Lf~ 222 (737)
T KOG1524|consen 162 FCQG---GHISIKPLAANS----KI---I-RW----RAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQG-A--NLFT 222 (737)
T ss_pred EecC---CeEEEeeccccc----ce---e-EE----eccCcEEEEeecCcccc-ceeecCCceeEEeecccC-c--cccc
Confidence 8887 566665551110 11 1 12 67999999999999999 999999999999999764 2 3445
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
...|+-+|++++|+|+ ..++.+ +-+++|+=..+ .+. |..++|++||..+
T Consensus 223 S~~~ey~ITSva~npd-~~~~v~-S~nt~R~~~p~-----------~GS----ifnlsWS~DGTQ~ 271 (737)
T KOG1524|consen 223 SAAEEYAITSVAFNPE-KDYLLW-SYNTARFSSPR-----------VGS----IFNLSWSADGTQA 271 (737)
T ss_pred CChhccceeeeeeccc-cceeee-eeeeeeecCCC-----------ccc----eEEEEEcCCCcee
Confidence 6689999999999999 444444 44566633332 233 9999999999766
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.59 E-value=7.1e-14 Score=121.64 Aligned_cols=216 Identities=11% Similarity=0.108 Sum_probs=147.6
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
..+.|+|.+|++|+..+|.+.....|.||....... .+.-..+..|... |+.|+|+|... .|+++
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-----------w~~~htls~Hd~~---vtgvdWap~sn-rIvtc 73 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-----------WEPAHTLSEHDKI---VTGVDWAPKSN-RIVTC 73 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC-----------ceeceehhhhCcc---eeEEeecCCCC-ceeEc
Confidence 346799999999999999999999999998876321 1222222335555 89999999975 77788
Q ss_pred ecCCCEEEEEEec-cCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC--ceee
Q 037120 175 STRSNVVSIYDIG-YISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP--SLEL 251 (489)
Q Consensus 175 ~~d~g~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~ 251 (489)
+.| ..-+||... .+.-++..++ ..|+..++++.|+|..+ .|++|+....|.||-++..+.- ...+
T Consensus 74 s~d-rnayVw~~~~~~~WkptlvL----------lRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhi 141 (361)
T KOG1523|consen 74 SHD-RNAYVWTQPSGGTWKPTLVL----------LRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHI 141 (361)
T ss_pred cCC-CCccccccCCCCeeccceeE----------EEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhh
Confidence 888 899999983 2222222222 44667999999999998 9999999999999988764321 2223
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce--eeccccceeecc
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI--GTLKAQSKIVSQ 329 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i--~~~~~~~~~~~~ 329 (489)
...+.+.|++++|+|++-++++|+.|+..|+|..- ++.+...... .|-|..+ +.+..+......
T Consensus 142 kkPirStv~sldWhpnnVLlaaGs~D~k~rVfSay----IK~Vdekpap----------~pWgsk~PFG~lm~E~~~~gg 207 (361)
T KOG1523|consen 142 KKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY----IKGVDEKPAP----------TPWGSKMPFGQLMSEASSSGG 207 (361)
T ss_pred CCccccceeeeeccCCcceecccccCcceeEEEEe----eeccccCCCC----------CCCccCCcHHHHHHhhccCCC
Confidence 34778999999999999999999999999999643 1111111110 1222221 222233333445
Q ss_pred ceeEEEeCCCCCeEEEEEecCC
Q 037120 330 EIHSIDLDPSCSYQLAFHLDDG 351 (489)
Q Consensus 330 ~i~~~~~~p~~~~~~~~~~~~~ 351 (489)
.+..+.|+|+|..++....|..
T Consensus 208 wvh~v~fs~sG~~lawv~Hds~ 229 (361)
T KOG1523|consen 208 WVHGVLFSPSGNRLAWVGHDST 229 (361)
T ss_pred ceeeeEeCCCCCEeeEecCCCc
Confidence 6677777777777766555543
No 197
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.57 E-value=1.1e-13 Score=121.67 Aligned_cols=346 Identities=16% Similarity=0.243 Sum_probs=179.7
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCC-EEEEEe
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQD-EVACAS 175 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~-~l~s~~ 175 (489)
.-|.++.|+..|.+||+|..+|.|.+|.-+............+...+++........-...|..+.|.+++.. .++...
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 3489999999999999999999999997654221000000000001111111111111223778999877543 333333
Q ss_pred cCCCEEEEEEeccCCCCC------------------ceee---------eeceeeeeecCCcccCeeEEEEecCCCcEEE
Q 037120 176 TRSNVVSIYDIGYISDEP------------------VEVL---------KTRRSVTVVGSDVQKGLSDLAFSAVNTSRLI 228 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~------------------~~~~---------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 228 (489)
. |.+|++|.+.....+. ..++ .+.+.+ -..|+--|++|.++.|.. .++
T Consensus 106 N-dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~---aNaHtyhiNSIS~NsD~E-t~l 180 (433)
T KOG1354|consen 106 N-DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVY---ANAHTYHINSISVNSDKE-TFL 180 (433)
T ss_pred C-CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeec---cccceeEeeeeeecCccc-eEe
Confidence 3 5999999996433222 0011 011111 256899999999999998 777
Q ss_pred EEeCCCcEEEEECCCCCcC-ceeeccCC-----CCceeEEEEeecCCEEEEE-eCCCeEEEEEcCCCcc----cceeecC
Q 037120 229 ASDTHGVVNIWDRRVGVLP-SLELSTGS-----HGTLNSIQLHAENQIIFAA-GKHGSIYLWDLRGGRT----SAPFHNH 297 (489)
Q Consensus 229 s~s~dg~i~iwd~~~~~~~-~~~~~~~h-----~~~v~~~~~~p~~~~l~~~-~~dg~i~lwd~~~~~~----~~~~~~~ 297 (489)
++. |=.|.+|++.-.... .+-..+.+ ..-|++..|+|..-.++.- ++.|+|+|-|+|.... .+.+...
T Consensus 181 SAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 181 SAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred ecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence 766 889999998864332 11122233 2458899999976655554 5599999999996432 1112111
Q ss_pred CccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeec-cc---eeeecCC----
Q 037120 298 KEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYN-SR---VSHVHCP---- 369 (489)
Q Consensus 298 ~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~-~~---~~~~~~~---- 369 (489)
..+ ... ......-..|..+.|+++|+|+++-..-. .+++++.. .. ...+++.
T Consensus 260 edp------------~~r------sffseiIsSISDvKFs~sGryilsRDylt--vk~wD~nme~~pv~t~~vh~~lr~k 319 (433)
T KOG1354|consen 260 EDP------------SSR------SFFSEIISSISDVKFSHSGRYILSRDYLT--VKLWDLNMEAKPVETYPVHEYLRSK 319 (433)
T ss_pred cCC------------cch------hhHHHHhhhhhceEEccCCcEEEEeccce--eEEEeccccCCcceEEeehHhHHHH
Confidence 111 000 00111223456666777777766532211 12333211 00 0111110
Q ss_pred -CCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccC------cccchhhHh---hhhc
Q 037120 370 -PPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYN------EDIESLSER---TKLK 439 (489)
Q Consensus 370 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~---~~~~ 439 (489)
...+..+. . ...-..+|+-+ +.++++||..+.++++++..+......+... +.+..+... ++..
T Consensus 320 Lc~lYEnD~--I---fdKFec~~sg~-~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~ 393 (433)
T KOG1354|consen 320 LCSLYENDA--I---FDKFECSWSGN-DSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRK 393 (433)
T ss_pred HHHHhhccc--h---hheeEEEEcCC-cceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCcc
Confidence 00000000 0 00112233333 6689999999999999977664322111111 111111100 0000
Q ss_pred ccC---CcccCCCceEEEEeeCCCCeEEeccCcceeEEE
Q 037120 440 KEN---RFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 440 ~~~---~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~ 475 (489)
... .-+.....+...+|||..+.||.+..+. +.+|
T Consensus 394 ~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 394 RDEISVDALDFRKKILHTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred ccccccchhhhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence 000 0134456788899999999888877643 4444
No 198
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2.7e-12 Score=126.13 Aligned_cols=190 Identities=14% Similarity=0.169 Sum_probs=135.3
Q ss_pred EECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCC--CEEEEEecCCCE
Q 037120 103 DFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQ--DEVACASTRSNV 180 (489)
Q Consensus 103 ~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~--~~l~s~~~d~g~ 180 (489)
.||+|+++++.... ..|.||...++.+.. .+ ..|+.. ++.+.+.|... ..+.+.+.| |.
T Consensus 23 vfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~--------~l------~~~~a~---l~s~~~~~~~~~~~~~~~~sl~-G~ 83 (792)
T KOG1963|consen 23 VFSNDAKFLFLCTG-NFVKVYSTATGECIT--------SL------EDHTAP---LTSVIVLPSSENANYLIVCSLD-GT 83 (792)
T ss_pred ccccCCcEEEEeeC-CEEEEEecchHhhhh--------hc------ccccCc---cceeeecCCCccceEEEEEecC-cc
Confidence 58999998887764 589999999987776 23 334444 88899988766 355577777 99
Q ss_pred EEEEEeccCCCCC---------------------------------------------------------------c---
Q 037120 181 VSIYDIGYISDEP---------------------------------------------------------------V--- 194 (489)
Q Consensus 181 i~vwd~~~~~~~~---------------------------------------------------------------~--- 194 (489)
|++||.....-.. .
T Consensus 84 I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~ 163 (792)
T KOG1963|consen 84 IRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEP 163 (792)
T ss_pred EEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCC
Confidence 9999875320000 0
Q ss_pred eee------------eece--ee-ee----------ecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCC--CCcC
Q 037120 195 EVL------------KTRR--SV-TV----------VGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV--GVLP 247 (489)
Q Consensus 195 ~~~------------~~~~--~~-~~----------~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~~ 247 (489)
..+ .... .+ .. .-..|+..+++.+++|.+. +++++..||.|.+|.--. ....
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~ 242 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSE 242 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEeccccccccc
Confidence 000 0000 00 00 0023666788999999999 999999999999995332 2222
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
..+.+.-|...|++++|+++|.+|++||..|.+-+|.+.+++ .+-++.-. .||..+.++||+...
T Consensus 243 t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLg----s~I~~i~vS~ds~~~ 307 (792)
T KOG1963|consen 243 TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLG----SPILHIVVSPDSDLY 307 (792)
T ss_pred cceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccC----CeeEEEEEcCCCCeE
Confidence 445677889999999999999999999999999999999987 23333333 349999999999776
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=1.2e-12 Score=116.30 Aligned_cols=184 Identities=20% Similarity=0.269 Sum_probs=130.7
Q ss_pred eeEEEECCCCcEEEEEecCC--eEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 99 ISALDFDCKGIYLVSATRSG--CLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg--~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
|.-+-|+. .++|..+.+. .+++.+......+... .-..+ |.+|.++-+ .++++--
T Consensus 49 IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~---------------~fpt~---IL~VrmNr~--RLvV~Le- 105 (391)
T KOG2110|consen 49 IVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEI---------------FFPTS---ILAVRMNRK--RLVVCLE- 105 (391)
T ss_pred EEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEE---------------ecCCc---eEEEEEccc--eEEEEEc-
Confidence 55555655 4666666543 4888888874444321 01112 889999876 2444443
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe--CCCcEEEEECCCCCcCceeeccC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD--THGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
..|.|||++. .+.+...... ..|..++.++.+++.+. +++.=+ ..|.|.+||+.+-+ .+..+.+
T Consensus 106 --e~IyIydI~~-----MklLhTI~t~----~~n~~gl~AlS~n~~n~-ylAyp~s~t~GdV~l~d~~nl~--~v~~I~a 171 (391)
T KOG2110|consen 106 --ESIYIYDIKD-----MKLLHTIETT----PPNPKGLCALSPNNANC-YLAYPGSTTSGDVVLFDTINLQ--PVNTINA 171 (391)
T ss_pred --ccEEEEeccc-----ceeehhhhcc----CCCccceEeeccCCCCc-eEEecCCCCCceEEEEEcccce--eeeEEEe
Confidence 4699999943 3455544432 45666788887777666 555433 57899999998755 5667779
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCe-EEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeecc
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGS-IYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLK 321 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~-i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~ 321 (489)
|++.+.+++|+++|.+|++++..|+ ||+|.+.+|+.+++|..-.. ...|.+++|+|++.+++...
T Consensus 172 H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--~~~IySL~Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 172 HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--PVSIYSLSFSPDSQFLAASS 237 (391)
T ss_pred cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--eeEEEEEEECCCCCeEEEec
Confidence 9999999999999999999999775 89999999999999874332 25589999999999886533
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.4e-13 Score=135.15 Aligned_cols=160 Identities=18% Similarity=0.177 Sum_probs=103.0
Q ss_pred CCCceeEEEECCCCcEEEEEecC---CeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRS---GCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~d---g~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+...+.+.+|+|||+.||.++.+ ..|++||+.+...... ..+.+| ..+++|+|++..++
T Consensus 202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l------------~~~~g~------~~~~~wSPDG~~La 263 (429)
T PRK01742 202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV------------ASFRGH------NGAPAFSPDGSRLA 263 (429)
T ss_pred CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE------------ecCCCc------cCceeECCCCCEEE
Confidence 44558999999999999988754 4699999987432210 011112 33489999997566
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++.+.+ |.+.||.+...... ... +..+...+....|+|+|+.+++++..++...||++...... ...
T Consensus 264 ~~~~~~-g~~~Iy~~d~~~~~-------~~~----lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~-~~~ 330 (429)
T PRK01742 264 FASSKD-GVLNIYVMGANGGT-------PSQ----LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG-ASL 330 (429)
T ss_pred EEEecC-CcEEEEEEECCCCC-------eEe----eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-eEE
Confidence 655556 87777755322111 111 13455577889999999933444446788888887643222 222
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCc
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR 289 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~ 289 (489)
. .+.. .+..|+|+|++++.++.++ +.+||+.+++
T Consensus 331 l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~ 364 (429)
T PRK01742 331 V-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGS 364 (429)
T ss_pred e-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCC
Confidence 2 3333 4578999999998887765 5558988764
No 201
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.57 E-value=1.5e-13 Score=127.41 Aligned_cols=186 Identities=16% Similarity=0.243 Sum_probs=131.4
Q ss_pred CCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEE
Q 037120 106 CKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYD 185 (489)
Q Consensus 106 ~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd 185 (489)
|+|--|..|=..|.|.+.|....+.... +... . ...... |+|+.|-|.+..+++.+-.+ |.+.+||
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~skl--------fne~-r-~i~kts---vT~ikWvpg~~~~Fl~a~~s-Gnlyly~ 248 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKL--------FNEE-R-LINKSS---VTCIKWVPGSDSLFLVAHAS-GNLYLYD 248 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHh--------hhhc-c-cccccc---eEEEEEEeCCCceEEEEEec-CceEEee
Confidence 4466677788888888887765222210 0000 0 001122 99999999988888877777 9999998
Q ss_pred eccCCC--CCce-eeeece-------------eeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 186 IGYISD--EPVE-VLKTRR-------------SVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 186 ~~~~~~--~~~~-~~~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
...... .+.. .++... ..+....--...|+..+|+|||+ +|++.+.||.++|+|..+.+ .+
T Consensus 249 ~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~e--Ll 325 (636)
T KOG2394|consen 249 KEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQE--LL 325 (636)
T ss_pred ccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHH--HH
Confidence 742211 1100 000000 00000111234889999999999 99999999999999999866 33
Q ss_pred eeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCC
Q 037120 250 ELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLAS 312 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 312 (489)
-.++.--+...|++|+|||++|++||.|.-|.||.+...+.+..=++|... |+.|+|.|
T Consensus 326 g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSW----Vs~VaFDp 384 (636)
T KOG2394|consen 326 GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSW----VSVVAFDP 384 (636)
T ss_pred HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccc----eeeEeecc
Confidence 333334578999999999999999999999999999998888888999999 99999998
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.56 E-value=2.9e-13 Score=125.44 Aligned_cols=201 Identities=12% Similarity=0.152 Sum_probs=138.6
Q ss_pred CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEec
Q 037120 108 GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIG 187 (489)
Q Consensus 108 g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~ 187 (489)
.+.|+.++.||.+.|.+-.. ..+. ....|... |.|-.|+|+|..++. +++| |.|++|.-.
T Consensus 75 ~d~~~i~s~DGkf~il~k~~-------------rVE~--sv~AH~~A---~~~gRW~~dGtgLlt-~GED-G~iKiWSrs 134 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSA-------------RVER--SISAHAAA---ISSGRWSPDGAGLLT-AGED-GVIKIWSRS 134 (737)
T ss_pred cceEEEEcCCceEEEecccc-------------hhhh--hhhhhhhh---hhhcccCCCCceeee-ecCC-ceEEEEecc
Confidence 45788889999999886544 1111 11235555 888999999986655 5555 999999862
Q ss_pred cCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeec
Q 037120 188 YISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAE 267 (489)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~ 267 (489)
.. +.. ++.....+|.+++|.|+.++.+++.+ +.+.|=-+....+ .+ ...+|.+-|.++.|+|.
T Consensus 135 GM-------LRS------tl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k-~i-~WkAHDGiiL~~~W~~~ 197 (737)
T KOG1524|consen 135 GM-------LRS------TVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSK-II-RWRAHDGLVLSLSWSTQ 197 (737)
T ss_pred ch-------HHH------HHhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccc-ee-EEeccCcEEEEeecCcc
Confidence 11 110 01223458999999999996666555 4555554444332 23 45699999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce-eecc--ccceeeccceeEEEeCCCCCeEE
Q 037120 268 NQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI-GTLK--AQSKIVSQEIHSIDLDPSCSYQL 344 (489)
Q Consensus 268 ~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i-~~~~--~~~~~~~~~i~~~~~~p~~~~~~ 344 (489)
++++++||.|-..++||-. |..+..-..|+-+ |++++|+|+..+. .+.. ...+.....|..+++++||..+.
T Consensus 198 s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~----ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a 272 (737)
T KOG1524|consen 198 SNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA----ITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADGTQAT 272 (737)
T ss_pred ccceeecCCceeEEeeccc-CcccccCChhccc----eeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCCceee
Confidence 9999999999999999975 5556666666655 9999999995433 2221 22223356789999999998766
Q ss_pred EEEecC
Q 037120 345 AFHLDD 350 (489)
Q Consensus 345 ~~~~~~ 350 (489)
.++..+
T Consensus 273 ~gt~~G 278 (737)
T KOG1524|consen 273 CGTSTG 278 (737)
T ss_pred ccccCc
Confidence 554433
No 203
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=3e-13 Score=113.32 Aligned_cols=135 Identities=18% Similarity=0.224 Sum_probs=97.9
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|.+-+|+|.++ +|++|..+ |+|.+..+...... ....+.+..+.+..+|..+|+.++|+ +. +|++|+ ||.|+
T Consensus 13 vf~qa~sp~~~-~l~agn~~-G~iav~sl~sl~s~--sa~~~gk~~iv~eqahdgpiy~~~f~--d~-~Lls~g-dG~V~ 84 (325)
T KOG0649|consen 13 VFAQAISPSKQ-YLFAGNLF-GDIAVLSLKSLDSG--SAEPPGKLKIVPEQAHDGPIYYLAFH--DD-FLLSGG-DGLVY 84 (325)
T ss_pred HHHHhhCCcce-EEEEecCC-CeEEEEEehhhhcc--ccCCCCCcceeeccccCCCeeeeeee--hh-heeecc-CceEE
Confidence 66788999886 67777777 99999999643221 11122333344558899999999998 33 677777 69999
Q ss_pred EEECCCCCc-----Cceeecc-CC-----CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCcc
Q 037120 238 IWDRRVGVL-----PSLELST-GS-----HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEV 300 (489)
Q Consensus 238 iwd~~~~~~-----~~~~~~~-~h-----~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~ 300 (489)
-|..+...+ +.++... .| --.|+++-+.|..+-++.++.|+.++-||+.+|+..+++.+|.+.
T Consensus 85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY 158 (325)
T KOG0649|consen 85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY 158 (325)
T ss_pred EeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce
Confidence 998765322 1111111 12 236899999998888888889999999999999999999998866
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=2.9e-13 Score=122.29 Aligned_cols=198 Identities=16% Similarity=0.186 Sum_probs=131.9
Q ss_pred eEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEE
Q 037120 159 DAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNI 238 (489)
Q Consensus 159 ~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~i 238 (489)
.+++|++++. ++++++.| |++|||+.... ..... ...|...|.++.|+||++ .|++-+.| ..+|
T Consensus 148 k~vaf~~~gs-~latgg~d-g~lRv~~~Ps~--------~t~l~----e~~~~~eV~DL~FS~dgk-~lasig~d-~~~V 211 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTD-GTLRVWEWPSM--------LTILE----EIAHHAEVKDLDFSPDGK-FLASIGAD-SARV 211 (398)
T ss_pred eEEEEcCCCC-Eeeecccc-ceEEEEecCcc--------hhhhh----hHhhcCccccceeCCCCc-EEEEecCC-ceEE
Confidence 5699999986 89999988 99999997211 11111 266889999999999999 99999999 9999
Q ss_pred EECCCCCcCceeecc--CCCCceeEEEEeecC---CEEEEEeC--CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeC
Q 037120 239 WDRRVGVLPSLELST--GSHGTLNSIQLHAEN---QIIFAAGK--HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 239 wd~~~~~~~~~~~~~--~h~~~v~~~~~~p~~---~~l~~~~~--dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~ 311 (489)
||++++. ++.... ....-+..+.|+.++ .+.+++.. -+.|+.||+...+.-..++..+
T Consensus 212 W~~~~g~--~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~------------- 276 (398)
T KOG0771|consen 212 WSVNTGA--ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK------------- 276 (398)
T ss_pred EEeccCc--hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh-------------
Confidence 9999984 332222 223345577777666 33333322 5667776665322110000000
Q ss_pred CCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCccee
Q 037120 312 SMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSW 391 (489)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (489)
.......|.+++++++
T Consensus 277 ------------~~~~~~siSsl~VS~d---------------------------------------------------- 292 (398)
T KOG0771|consen 277 ------------KIKRFKSISSLAVSDD---------------------------------------------------- 292 (398)
T ss_pred ------------hhhccCcceeEEEcCC----------------------------------------------------
Confidence 0001123444445444
Q ss_pred ecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcce
Q 037120 392 LSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSS 471 (489)
Q Consensus 392 ~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~ 471 (489)
+.+++-|+.||.|-|++..+- +.++-.+. .|...|+++.|+|+...+++-+.+..
T Consensus 293 ----Gkf~AlGT~dGsVai~~~~~l----------q~~~~vk~-----------aH~~~VT~ltF~Pdsr~~~svSs~~~ 347 (398)
T KOG0771|consen 293 ----GKFLALGTMDGSVAIYDAKSL----------QRLQYVKE-----------AHLGFVTGLTFSPDSRYLASVSSDNE 347 (398)
T ss_pred ----CcEEEEeccCCcEEEEEecee----------eeeEeehh-----------hheeeeeeEEEcCCcCcccccccCCc
Confidence 556667788999999998877 55554431 69999999999999999988888877
Q ss_pred eEEEe
Q 037120 472 LLVVS 476 (489)
Q Consensus 472 i~v~~ 476 (489)
..|..
T Consensus 348 ~~v~~ 352 (398)
T KOG0771|consen 348 AAVTK 352 (398)
T ss_pred eeEEE
Confidence 77753
No 205
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=1.1e-12 Score=121.88 Aligned_cols=192 Identities=12% Similarity=0.109 Sum_probs=113.3
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEe-----eCCCCCEEEE
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRW-----NLANQDEVAC 173 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~-----~~~~~~~l~s 173 (489)
+....++-.|++|+-.-. ..+.||+........... ....+.+ ..-+|-+| .|.+-.+++
T Consensus 126 ~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi--------~k~~y~g-----t~P~cHdfn~~~a~~~g~dllI- 190 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPI--------DKREYKG-----TSPTCHDFNSFTATPKGLDLLI- 190 (636)
T ss_pred eeeccccCCCCEEEEecC-CeEEEEEccCcchhccch--------hhhcccC-----CCCceecccccccCCCCcceEE-
Confidence 445555566777755432 358888887522222110 0000000 00222333 234433454
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCC---CcCcee
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVG---VLPSLE 250 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~ 250 (489)
|-.. |.|.+.|.... +..+.+.... .-....|+++.|-|.+.+.|+.+-.+|.+++||.... +.++..
T Consensus 191 Gf~t-Gqvq~idp~~~--~~sklfne~r------~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 191 GFTT-GQVQLIDPINF--EVSKLFNEER------LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred eecc-CceEEecchhh--HHHHhhhhcc------cccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 4444 89999988431 1111111111 1234689999999999888888889999999976421 000110
Q ss_pred -----------------------eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeE
Q 037120 251 -----------------------LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTS 307 (489)
Q Consensus 251 -----------------------~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 307 (489)
...--++.|+.++|+|||++|++.+.||.+||||..+.+.+..++.--+. ..+
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG----LLC 337 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG----LLC 337 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccc----eEE
Confidence 00011357889999999999999999999999999987766666544444 666
Q ss_pred EEeCCCCccee
Q 037120 308 LKLASMLEKIG 318 (489)
Q Consensus 308 l~~~~~~~~i~ 318 (489)
++|+|||++|+
T Consensus 338 vcWSPDGKyIv 348 (636)
T KOG2394|consen 338 VCWSPDGKYIV 348 (636)
T ss_pred EEEcCCccEEE
Confidence 66666655444
No 206
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.52 E-value=1.7e-11 Score=116.63 Aligned_cols=165 Identities=9% Similarity=0.034 Sum_probs=104.8
Q ss_pred CceeEEEECCCCcEEEEEe-cCCeEEEEeCCC-cccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 97 PGISALDFDCKGIYLVSAT-RSGCLTVHDFES-LYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~-~dg~i~vwd~~~-~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
.....++|+|++++|++++ .++.|.+|+++. +..... ... ..... ...++|+|+++.++++.
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~----------~~~---~~~~~---p~~i~~~~~g~~l~v~~ 98 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFA----------AES---PLPGS---PTHISTDHQGRFLFSAS 98 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEe----------eee---cCCCC---ceEEEECCCCCEEEEEE
Confidence 3467889999999987765 488999999863 111110 000 01111 45699999997555554
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc----ee
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS----LE 250 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~----~~ 250 (489)
..+ +.|.+|++...... ...+ .. ..+......++++|+++..+++...++.|.+||+.+..... ..
T Consensus 99 ~~~-~~v~v~~~~~~g~~-~~~~---~~-----~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~ 168 (330)
T PRK11028 99 YNA-NCVSVSPLDKDGIP-VAPI---QI-----IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE 168 (330)
T ss_pred cCC-CeEEEEEECCCCCC-CCce---ee-----ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc
Confidence 445 99999999532111 0111 10 11223466788999998444556678999999998633110 00
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCC
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRG 287 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~ 287 (489)
...........++|+|++++++++.. ++.|.+||+..
T Consensus 169 ~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 169 VTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred eecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 00111234578999999999999877 99999999974
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.51 E-value=1.7e-12 Score=113.26 Aligned_cols=119 Identities=10% Similarity=0.157 Sum_probs=94.6
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|+|.+|+++.+ .++.+..+ ..|.||...... .....+++..|...|+.|+|.|..+ .|++|+.|..-+
T Consensus 13 itchAwn~drt-~iAv~~~~-~evhiy~~~~~~---------~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnay 80 (361)
T KOG1523|consen 13 ITCHAWNSDRT-QIAVSPNN-HEVHIYSMLGAD---------LWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAY 80 (361)
T ss_pred eeeeeecCCCc-eEEeccCC-ceEEEEEecCCC---------CceeceehhhhCcceeEEeecCCCC-ceeEccCCCCcc
Confidence 99999999987 55555555 799999984321 1234556688999999999999998 999999999999
Q ss_pred EEECCCC-CcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC
Q 037120 238 IWDRRVG-VLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGG 288 (489)
Q Consensus 238 iwd~~~~-~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~ 288 (489)
+|....+ +....-.+..++...+++.|+|.++.+++|+.-..|.||-+...
T Consensus 81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~E 132 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQE 132 (361)
T ss_pred ccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecc
Confidence 9998443 32222234467889999999999999999999999999887753
No 208
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.50 E-value=1.9e-12 Score=111.83 Aligned_cols=114 Identities=15% Similarity=0.289 Sum_probs=83.5
Q ss_pred eeEEEeeCCCCCEEEE-EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC---C
Q 037120 158 LDAVRWNLANQDEVAC-ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT---H 233 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s-~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~---d 233 (489)
|.+++|+|++..++++ |..+ +.|.+||++ . .. ...+ +...++.|.|+|+|+ +|++++. .
T Consensus 62 I~~~~WsP~g~~favi~g~~~-~~v~lyd~~-----~-~~---i~~~------~~~~~n~i~wsP~G~-~l~~~g~~n~~ 124 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMP-AKVTLYDVK-----G-KK---IFSF------GTQPRNTISWSPDGR-FLVLAGFGNLN 124 (194)
T ss_pred eEEEEECcCCCEEEEEEccCC-cccEEEcCc-----c-cE---eEee------cCCCceEEEECCCCC-EEEEEEccCCC
Confidence 9999999999866555 3445 799999993 1 11 1111 345788999999999 8887764 4
Q ss_pred CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC------CCeEEEEEcCCCcccce
Q 037120 234 GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK------HGSIYLWDLRGGRTSAP 293 (489)
Q Consensus 234 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~------dg~i~lwd~~~~~~~~~ 293 (489)
|.|.+||.++.+ .+... .| ..++.++|+|+|++++++.. |+.++||+.. |+.+..
T Consensus 125 G~l~~wd~~~~~--~i~~~-~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 125 GDLEFWDVRKKK--KISTF-EH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred cEEEEEECCCCE--Eeecc-cc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 679999999655 44333 33 45789999999999999864 7889999985 555443
No 209
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=2.3e-12 Score=128.61 Aligned_cols=201 Identities=16% Similarity=0.177 Sum_probs=127.1
Q ss_pred ceeEEEECCC--CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCC--CCCCceeEEEeeCCCCCEEEE
Q 037120 98 GISALDFDCK--GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHI--PLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 98 ~V~~~~fs~~--g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~--~~~~~V~~v~~~~~~~~~l~s 173 (489)
.|+.+.+-.+ ..+|++|+.||.|+||+--.......+ ....-..+.++. ..+.+ .-++|......++++
T Consensus 1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~e------LVTaw~~Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~t 1183 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPE------LVTAWSSLSDQLPGARGTG-LVVDWQQQSGHLLVT 1183 (1387)
T ss_pred ccceeeeecccchhheeeeccCceEEEecccccccCCce------eEEeeccccccCccCCCCC-eeeehhhhCCeEEec
Confidence 4888888653 578999999999999964321100000 001111111111 11112 336898887666666
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-ceeec
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SLELS 252 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~ 252 (489)
|. -..|+|||.... .++.... .+-...|+++.-...+.++|++|..||.|++||.|..... .+...
T Consensus 1184 Gd--~r~IRIWDa~~E-----~~~~diP------~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~ 1250 (1387)
T KOG1517|consen 1184 GD--VRSIRIWDAHKE-----QVVADIP------YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY 1250 (1387)
T ss_pred CC--eeEEEEEecccc-----eeEeecc------cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee
Confidence 65 389999999322 3332222 3344567777665555459999999999999999986443 45556
Q ss_pred cCCCCc--eeEEEEeecCCE-EEEEeCCCeEEEEEcCCCcc--cceeecCCccCCCCeeEEEeCCCCcceee
Q 037120 253 TGSHGT--LNSIQLHAENQI-IFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 253 ~~h~~~--v~~~~~~p~~~~-l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
..|+.. |..+.+.+.|-- |++|+.||.|++||+|.... ..++..|-+. ...++++..++....+++
T Consensus 1251 R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y-Gs~lTal~VH~hapiiAs 1321 (1387)
T KOG1517|consen 1251 REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY-GSALTALTVHEHAPIIAS 1321 (1387)
T ss_pred cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecccc-CccceeeeeccCCCeeee
Confidence 688877 999999987655 89999999999999998422 2222232211 012777777777666654
No 210
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=6.1e-13 Score=123.68 Aligned_cols=234 Identities=15% Similarity=0.245 Sum_probs=149.2
Q ss_pred cccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCc
Q 037120 146 SKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTS 225 (489)
Q Consensus 146 ~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 225 (489)
.++.||.+. |.|++|+.+|. +|++|++| -.+.|||.- ..+.+.... .||...|.++.|-|...+
T Consensus 44 ~eL~GH~GC---VN~LeWn~dG~-lL~SGSDD-~r~ivWd~~-----~~KllhsI~------TgHtaNIFsvKFvP~tnn 107 (758)
T KOG1310|consen 44 AELTGHTGC---VNCLEWNADGE-LLASGSDD-TRLIVWDPF-----EYKLLHSIS------TGHTANIFSVKFVPYTNN 107 (758)
T ss_pred hhhccccce---ecceeecCCCC-EEeecCCc-ceEEeecch-----hcceeeeee------cccccceeEEeeeccCCC
Confidence 345677777 99999999996 99999988 999999992 113333333 789999999999996543
Q ss_pred -EEEEEeCCCcEEEEECCCCC--------cCceeeccCCCCceeEEEEeecC-CEEEEEeCCCeEEEEEcCCCcccceee
Q 037120 226 -RLIASDTHGVVNIWDRRVGV--------LPSLELSTGSHGTLNSIQLHAEN-QIIFAAGKHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 226 -~l~s~s~dg~i~iwd~~~~~--------~~~~~~~~~h~~~v~~~~~~p~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~ 295 (489)
++++|..|..|+++|+...+ .........|...|..++..|++ ..+.+++.||+|+-+|+|....-.
T Consensus 108 riv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~--- 184 (758)
T KOG1310|consen 108 RIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCN--- 184 (758)
T ss_pred eEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCC---
Confidence 78899999999999998521 11233455888999999999999 566777889999999999642211
Q ss_pred cCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEe------eccceeeecCC
Q 037120 296 NHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDV------YNSRVSHVHCP 369 (489)
Q Consensus 296 ~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~------~~~~~~~~~~~ 369 (489)
+.+. .++..+.++++- -...++.++|...+.++.+..+-+..+.+. +...-....|+
T Consensus 185 -p~~~--~~~~l~ny~~~l--------------ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~p 247 (758)
T KOG1310|consen 185 -PDED--CPSILVNYNPQL--------------IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCP 247 (758)
T ss_pred -cccc--ccHHHHHhchhh--------------heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCC
Confidence 1111 011112222211 234677888888877777666654333331 11111112222
Q ss_pred CC------CCcCCC--C--ccccccC--CCcceeecCCcEEEEeecCCCcEEEEeccCC
Q 037120 370 PP------AWLSDS--N--NSADQLH--LRKPSWLSTNSIYAVGSSSDHGIHLLDFFPG 416 (489)
Q Consensus 370 ~~------~~~~~~--~--~~~~~~~--~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~ 416 (489)
+. -|.+.- + ...+... ...+.|.|+|..+|++=+. -.|+++|+..+
T Consensus 248 p~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~g-EhVYlfdvn~~ 305 (758)
T KOG1310|consen 248 PKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGG-EHVYLFDVNED 305 (758)
T ss_pred CcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCC-eEEEEEeecCC
Confidence 10 011110 0 0111111 2457889999999998433 27999999877
No 211
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.47 E-value=1.1e-12 Score=124.58 Aligned_cols=218 Identities=13% Similarity=0.087 Sum_probs=150.9
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
++.+|..-|.|++|+.||+.+|+|+.|..|.||+-.-..... -.|... |.|+.|+|-+. .
T Consensus 48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk----------------YSH~D~---IQCMsFNP~~h-~ 107 (1081)
T KOG1538|consen 48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK----------------YSHNDA---IQCMSFNPITH-Q 107 (1081)
T ss_pred ccccccceEEEEEEccCCceeccCCCceeEEEecccccceee----------------eccCCe---eeEeecCchHH-H
Confidence 477788889999999999999999999999999765422111 235555 99999999975 6
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
+++++- ...-+|..... .+.+ ......|.+++|..||+ +|+-|-.+|+|.+-+....++..++
T Consensus 108 LasCsL--sdFglWS~~qK-----~V~K---------~kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~~I~ 170 (1081)
T KOG1538|consen 108 LASCSL--SDFGLWSPEQK-----SVSK---------HKSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKVKIE 170 (1081)
T ss_pred hhhcch--hhccccChhhh-----hHHh---------hhhheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcceEEe
Confidence 777763 36778876321 1111 11234789999999999 9999999999999865543333455
Q ss_pred eccCCCCceeEEEEeecC-----CEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceee------
Q 037120 251 LSTGSHGTLNSIQLHAEN-----QIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGT------ 319 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~-----~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~------ 319 (489)
...+.+.+|.+++|+|.. ..+++.....++.+|.+.. +.+..-....-. -.++.+.++|+++.-
T Consensus 171 Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~Fd----P~CisYf~NGEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 171 RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALNFD----PCCISYFTNGEYILLGGSDKQ 245 (1081)
T ss_pred CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccCCCC----chhheeccCCcEEEEccCCCc
Confidence 555778999999999964 3455555566666666653 222111111111 457778888887611
Q ss_pred ----------ccccceeeccceeEEEeCCCCCeEEEEEecCC
Q 037120 320 ----------LKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDG 351 (489)
Q Consensus 320 ----------~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~ 351 (489)
+.+.. .....|+.+...|++.++++++.|++
T Consensus 246 L~~fTR~GvrLGTvg-~~D~WIWtV~~~PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 246 LSLFTRDGVRLGTVG-EQDSWIWTVQAKPNSQYVVVGCQDGT 286 (1081)
T ss_pred eEEEeecCeEEeecc-ccceeEEEEEEccCCceEEEEEccCe
Confidence 00111 24567999999999999999999987
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.47 E-value=1.9e-13 Score=124.62 Aligned_cols=175 Identities=18% Similarity=0.246 Sum_probs=134.9
Q ss_pred CCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 96 KPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
+-|-..+.|+.+|++|+.|+.-|.|..+|+.+....... ...+ . |.++.|-.+.+ +++.+-
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei---------~v~E------t---v~Dv~~LHneq-~~AVAQ 189 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI---------NVME------T---VRDVTFLHNEQ-FFAVAQ 189 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeee---------ehhh------h---hhhhhhhcchH-HHHhhh
Confidence 345678899999999999999999999999985444320 1111 1 77799987754 666666
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCC
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
...+.|||-. ...+.+.+. ...|..+.|.|..- +|++++..|.++.-|+.+|+ .+..+..-
T Consensus 190 --K~y~yvYD~~------GtElHClk~--------~~~v~rLeFLPyHf-LL~~~~~~G~L~Y~DVS~Gk--lVa~~~t~ 250 (545)
T KOG1272|consen 190 --KKYVYVYDNN------GTELHCLKR--------HIRVARLEFLPYHF-LLVAASEAGFLKYQDVSTGK--LVASIRTG 250 (545)
T ss_pred --hceEEEecCC------CcEEeehhh--------cCchhhhcccchhh-eeeecccCCceEEEeechhh--hhHHHHcc
Confidence 4799999972 233333332 23789999999988 99999999999999999998 44444455
Q ss_pred CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCC
Q 037120 256 HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLAS 312 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 312 (489)
.+.+..++-+|-+..+-+|...|+|.+|.......+..+..|.++ |.++++.+
T Consensus 251 ~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~----V~siAv~~ 303 (545)
T KOG1272|consen 251 AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGP----VSSIAVDR 303 (545)
T ss_pred CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCC----cceEEECC
Confidence 688899999999999999999999999999887778888888866 76665443
No 213
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=2.1e-11 Score=114.32 Aligned_cols=256 Identities=16% Similarity=0.202 Sum_probs=159.5
Q ss_pred ceeEEEECCCCcEE-EEEecCCeEEEEeCCCcccccC-CCCCCC-------------------CCcccccccccCCCC--
Q 037120 98 GISALDFDCKGIYL-VSATRSGCLTVHDFESLYYQCN-GTLPGV-------------------GLKEDQSKHLLHIPL-- 154 (489)
Q Consensus 98 ~V~~~~fs~~g~~l-a~g~~dg~i~vwd~~~~~~~~~-~~~~~~-------------------g~~~~~~~~~~h~~~-- 154 (489)
.-+.|..+|||+|+ |+|..--.|+|||+......-. .+...+ -..+-|...-.|...
T Consensus 53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RI 132 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRI 132 (703)
T ss_pred ccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeec
Confidence 35677889999986 6777899999999986432111 000000 000111111111110
Q ss_pred CCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC
Q 037120 155 PQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG 234 (489)
Q Consensus 155 ~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg 234 (489)
...-..++++.-+..+++.|+ +..|.-+++..+ . |+.++.-....+++|..++-+. +|++|+.||
T Consensus 133 P~~GRDm~y~~~scDly~~gs--g~evYRlNLEqG-----r-------fL~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g 197 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGS--GSEVYRLNLEQG-----R-------FLNPFETDSGELNVVSINEEHG-LLACGTEDG 197 (703)
T ss_pred CcCCccccccCCCccEEEeec--CcceEEEEcccc-----c-------cccccccccccceeeeecCccc-eEEecccCc
Confidence 000123555544445777777 457777777322 2 3333344557999999999998 999999999
Q ss_pred cEEEEECCCCCcC-ce---eeccCCCC-----ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCe
Q 037120 235 VVNIWDRRVGVLP-SL---ELSTGSHG-----TLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPL 305 (489)
Q Consensus 235 ~i~iwd~~~~~~~-~~---~~~~~h~~-----~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v 305 (489)
.|..||.|..+.. .+ .....|.+ .|+++.|+-+|-.+++|..+|.|.|||+|+.+.+. .+.|... .||
T Consensus 198 ~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e--~pi 274 (703)
T KOG2321|consen 198 VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL-VKDHGYE--LPI 274 (703)
T ss_pred eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee-ecccCCc--cce
Confidence 9999999986432 11 11113333 39999999999999999999999999999866432 2233322 234
Q ss_pred eEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccC
Q 037120 306 TSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLH 385 (489)
Q Consensus 306 ~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (489)
..+.|.+.+
T Consensus 275 ~~l~~~~~~----------------------------------------------------------------------- 283 (703)
T KOG2321|consen 275 KKLDWQDTD----------------------------------------------------------------------- 283 (703)
T ss_pred eeecccccC-----------------------------------------------------------------------
Confidence 333332210
Q ss_pred CCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEe
Q 037120 386 LRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVA 465 (489)
Q Consensus 386 ~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~s 465 (489)
++..+++ .+...++|||-.++ +....++ + ...++.+++-|+..++.+
T Consensus 284 ---------~q~~v~S-~Dk~~~kiWd~~~G----------k~~asiE------------p-t~~lND~C~~p~sGm~f~ 330 (703)
T KOG2321|consen 284 ---------QQNKVVS-MDKRILKIWDECTG----------KPMASIE------------P-TSDLNDFCFVPGSGMFFT 330 (703)
T ss_pred ---------CCceEEe-cchHHhhhcccccC----------Cceeecc------------c-cCCcCceeeecCCceEEE
Confidence 0233444 13458899999888 5555555 3 334999999999999999
Q ss_pred ccCcceeEEE
Q 037120 466 GTKNSSLLVV 475 (489)
Q Consensus 466 gs~dg~i~v~ 475 (489)
+-+++.+.-|
T Consensus 331 Ane~~~m~~y 340 (703)
T KOG2321|consen 331 ANESSKMHTY 340 (703)
T ss_pred ecCCCcceeE
Confidence 9988877654
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=5.5e-11 Score=105.55 Aligned_cols=140 Identities=24% Similarity=0.350 Sum_probs=95.8
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
+..++|++.- ..++.+..| -.|++||-... .+ ..++ ..-...|++++|-|.+...|+.|+ -+-|+
T Consensus 101 lr~~aWhqH~-~~fava~nd-dvVriy~ksst--~p-t~Lk---------s~sQrnvtclawRPlsaselavgC-r~gIc 165 (445)
T KOG2139|consen 101 LRGVAWHQHI-IAFAVATND-DVVRIYDKSST--CP-TKLK---------SVSQRNVTCLAWRPLSASELAVGC-RAGIC 165 (445)
T ss_pred eeeEeechhh-hhhhhhccC-cEEEEeccCCC--CC-ceec---------chhhcceeEEEeccCCcceeeeee-cceeE
Confidence 6779999854 356666666 79999998441 11 2222 122348999999999986777666 56789
Q ss_pred EEECCCCCc----------Cceee--ccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceeecCCccCCCC
Q 037120 238 IWDRRVGVL----------PSLEL--STGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEVCHLP 304 (489)
Q Consensus 238 iwd~~~~~~----------~~~~~--~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~ 304 (489)
+|....... .+.+. ..+| .+|++++|++||..+++++. |..|.|||..++..+.......+.
T Consensus 166 iW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg---- 240 (445)
T KOG2139|consen 166 IWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGG---- 240 (445)
T ss_pred EEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCc----
Confidence 997643211 01111 1244 78999999999999999988 899999999998774443222333
Q ss_pred eeEEEeCCCCcce
Q 037120 305 LTSLKLASMLEKI 317 (489)
Q Consensus 305 v~~l~~~~~~~~i 317 (489)
++-+.|+|||.++
T Consensus 241 ~slLkwSPdgd~l 253 (445)
T KOG2139|consen 241 FSLLKWSPDGDVL 253 (445)
T ss_pred eeeEEEcCCCCEE
Confidence 6777777777655
No 215
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=2.6e-10 Score=111.90 Aligned_cols=139 Identities=13% Similarity=0.085 Sum_probs=84.5
Q ss_pred eeEEEeeCCCCCEEEEEecC-CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEE-EEeCCC-
Q 037120 158 LDAVRWNLANQDEVACASTR-SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLI-ASDTHG- 234 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d-~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~s~dg- 234 (489)
+.+.+|+|+++.++++.... +..|.+||+..+.. ..+. .+.+ .+..++|+|||+ .|+ +.+.+|
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~---~~l~-------~~~~---~~~~~~~SPDG~-~La~~~~~~g~ 266 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV---RQVA-------SFPR---HNGAPAFSPDGS-KLAFALSKTGS 266 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe---EEcc-------CCCC---CcCCeEECCCCC-EEEEEEcCCCC
Confidence 78899999998555543221 25799999843311 1111 1123 344689999999 555 445555
Q ss_pred -cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CCe--EEEEEcCCCcccceeecCCccCCCCeeEEEe
Q 037120 235 -VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGS--IYLWDLRGGRTSAPFHNHKEVCHLPLTSLKL 310 (489)
Q Consensus 235 -~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~--i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~ 310 (489)
.|++||+.+++ .. .+..+...+....|+|+|+.|+.++. ++. |+++|+.+++. ..+...... .....|
T Consensus 267 ~~I~~~d~~tg~--~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~----~~~~~~ 338 (429)
T PRK03629 267 LNLYVMDLASGQ--IR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQ----NQDADV 338 (429)
T ss_pred cEEEEEECCCCC--EE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCC----ccCEEE
Confidence 58899998865 33 23334456788999999998887776 444 55556665542 233222222 445566
Q ss_pred CCCCccee
Q 037120 311 ASMLEKIG 318 (489)
Q Consensus 311 ~~~~~~i~ 318 (489)
+|||+.++
T Consensus 339 SpDG~~Ia 346 (429)
T PRK03629 339 SSDGKFMV 346 (429)
T ss_pred CCCCCEEE
Confidence 66666554
No 216
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.41 E-value=3e-12 Score=108.72 Aligned_cols=168 Identities=14% Similarity=0.188 Sum_probs=117.3
Q ss_pred ceeEEEECCC-C--cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 98 GISALDFDCK-G--IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 98 ~V~~~~fs~~-g--~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
.+.|..+..+ + -+|++|-.+|.|.+||+.++...-..+ + ..........|... |.++.+.+... .=++|
T Consensus 152 svmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~--~--~~kv~~~~ash~qp---vlsldyas~~~-rGisg 223 (323)
T KOG0322|consen 152 SVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP--Q--SSKVESPNASHKQP---VLSLDYASSCD-RGISG 223 (323)
T ss_pred ceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc--c--ccccccchhhccCc---ceeeeechhhc-CCcCC
Confidence 4777775433 2 345677789999999999852221100 0 01111222335555 88899987644 33455
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
+.+ ..+..|.+...... ..+.... .--+..|..+..-||++ .++|++.|+.|+||..++.. .+..++.
T Consensus 224 ga~-dkl~~~Sl~~s~gs--lq~~~e~------~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~--pLAVLky 291 (323)
T KOG0322|consen 224 GAD-DKLVMYSLNHSTGS--LQIRKEI------TLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLN--PLAVLKY 291 (323)
T ss_pred Ccc-ccceeeeeccccCc--ccccceE------EecCCCccceEEccCCc-EEeecccCCcEEEEEeccCC--chhhhhh
Confidence 555 68889998543221 1111111 11224788999999999 99999999999999999976 6667889
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCeEEEEEc
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGSIYLWDL 285 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~ 285 (489)
|++.|++++|+|+...+++++.|+.|.+|++
T Consensus 292 Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 292 HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999986
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.40 E-value=2.7e-10 Score=99.64 Aligned_cols=242 Identities=11% Similarity=0.120 Sum_probs=146.5
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
....++|+.|...+++|..+| .+||+.+........ -+...+..+.-+-|--+ .+.+.|+.+
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r---------------~~~~~G~~~veMLfR~N--~laLVGGg~ 68 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR---------------QFIDGGFKIVEMLFRSN--YLALVGGGS 68 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh---------------ccccCchhhhhHhhhhc--eEEEecCCC
Confidence 355689999999999999887 899998862221110 01111111222323221 233333322
Q ss_pred -----CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC--cee
Q 037120 178 -----SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP--SLE 250 (489)
Q Consensus 178 -----~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~ 250 (489)
-+.|.|||=... . .+.. .. -..+|.+|.+.++ .|+..- .+.|+||.....-+. ++.
T Consensus 69 ~pky~pNkviIWDD~k~--~--~i~e-l~--------f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~e 131 (346)
T KOG2111|consen 69 RPKYPPNKVIIWDDLKE--R--CIIE-LS--------FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIE 131 (346)
T ss_pred CCCCCCceEEEEecccC--c--EEEE-EE--------eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeee
Confidence 258999994111 1 1111 11 2348999998764 455554 689999998743221 222
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcc--cceeecCCccCCCCeeEEEeCCCCcceeeccccceee
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRT--SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIV 327 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~ 327 (489)
+. .....+.+++-+.+..+|+.-|. -|.|+|-|+...+. -..+..|... |.+++++-+
T Consensus 132 t~-~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~----Iacv~Ln~~-------------- 192 (346)
T KOG2111|consen 132 TR-SNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSD----IACVALNLQ-------------- 192 (346)
T ss_pred cc-cCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCc----eeEEEEcCC--------------
Confidence 22 21223444433334444444455 78999999887543 2455566544 555443322
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCC-
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDH- 406 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~- 406 (489)
|.+++|+|..|
T Consensus 193 --------------------------------------------------------------------Gt~vATaStkGT 204 (346)
T KOG2111|consen 193 --------------------------------------------------------------------GTLVATASTKGT 204 (346)
T ss_pred --------------------------------------------------------------------ccEEEEeccCcE
Confidence 55677777777
Q ss_pred cEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccccc
Q 037120 407 GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 407 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~ 481 (489)
-|||||..++ +.++++... --...|.+++|+|+..++|++|..|+|.||+-+...
T Consensus 205 LIRIFdt~~g----------~~l~E~RRG----------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 205 LIRIFDTEDG----------TLLQELRRG----------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EEEEEEcCCC----------cEeeeeecC----------CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 5899999999 777775411 234679999999999999999999999999877643
No 218
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=4e-11 Score=118.06 Aligned_cols=161 Identities=11% Similarity=0.016 Sum_probs=104.4
Q ss_pred cCCCceeEEEECCCCcEEEEEec---CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 94 FGKPGISALDFDCKGIYLVSATR---SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~---dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.+...+.+.+|+|||+.|+..+. +..|.+||+.++..... . ..... ..+++|+|++..+
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l---------~------~~~g~---~~~~~~SpDG~~l 262 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV---------A------SFRGI---NGAPSFSPDGRRL 262 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe---------c------cCCCC---ccCceECCCCCEE
Confidence 34456889999999999998874 34699999977433221 0 01111 3458999999877
Q ss_pred EEEEecCCC--EEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCc--EEEEECCCCC
Q 037120 171 VACASTRSN--VVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGV--VNIWDRRVGV 245 (489)
Q Consensus 171 l~s~~~d~g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~--i~iwd~~~~~ 245 (489)
+++.+.+ | .|.+||+..+. +.. +..+.......+|+|++. .|+.++ .+|. |+++|+.+++
T Consensus 263 ~~~~s~~-g~~~Iy~~d~~~g~------~~~-------lt~~~~~~~~~~~spDG~-~l~f~sd~~g~~~iy~~dl~~g~ 327 (433)
T PRK04922 263 ALTLSRD-GNPEIYVMDLGSRQ------LTR-------LTNHFGIDTEPTWAPDGK-SIYFTSDRGGRPQIYRVAASGGS 327 (433)
T ss_pred EEEEeCC-CCceEEEEECCCCC------eEE-------CccCCCCccceEECCCCC-EEEEEECCCCCceEEEEECCCCC
Confidence 6666655 4 68889984321 111 123334456789999999 666555 4554 6667776655
Q ss_pred cCceeeccCCCCceeEEEEeecCCEEEEEeCC---CeEEEEEcCCCcc
Q 037120 246 LPSLELSTGSHGTLNSIQLHAENQIIFAAGKH---GSIYLWDLRGGRT 290 (489)
Q Consensus 246 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d---g~i~lwd~~~~~~ 290 (489)
.. .+..+.......+|+|+|++++..+.+ ..|.+||+.+++.
T Consensus 328 ~~---~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 328 AE---RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred eE---EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 22 222223345578999999998877553 2699999987653
No 219
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=4.5e-11 Score=107.19 Aligned_cols=181 Identities=19% Similarity=0.212 Sum_probs=120.2
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
.|..++.. +| .|++|-.+|.+.+|.......... +...+ ..+.++..|.-.+..++++++|+..
T Consensus 107 ~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss----------~l~~l----a~g~g~~~~r~~~~~p~Iva~GGke 170 (412)
T KOG3881|consen 107 SIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSS----------KLIKL----ATGPGLYDVRQTDTDPYIVATGGKE 170 (412)
T ss_pred cccchhhc-CC-EEEEEecCCcEEEEeccCCccccc----------cceee----ecCCceeeeccCCCCCceEecCchh
Confidence 35555442 33 677888899999999885221110 00111 1122366777788888888877754
Q ss_pred -CCEEEEEEeccCCCCCceeeeeceeeeeec-CCcccCeeEEEEecC--CCcEEEEEeCCCcEEEEECCCCCcCceeecc
Q 037120 178 -SNVVSIYDIGYISDEPVEVLKTRRSVTVVG-SDVQKGLSDLAFSAV--NTSRLIASDTHGVVNIWDRRVGVLPSLELST 253 (489)
Q Consensus 178 -~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 253 (489)
-+.+.|||+... . +++.-.....-.+ ..-.-.++++.|.+. .. .|++++.-+.|++||.+.+..|+. .+.
T Consensus 171 ~~n~lkiwdle~~--~--qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~-~fat~T~~hqvR~YDt~~qRRPV~-~fd 244 (412)
T KOG3881|consen 171 NINELKIWDLEQS--K--QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNY-KFATITRYHQVRLYDTRHQRRPVA-QFD 244 (412)
T ss_pred cccceeeeecccc--e--eeeeccCCCCccccceeeeeeccceecCCCCCc-eEEEEecceeEEEecCcccCccee-Eec
Confidence 147899999533 1 2222111100000 011235678899887 44 899999999999999998777744 344
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccce-eecCCcc
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAP-FHNHKEV 300 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~-~~~~~~~ 300 (489)
--+.+|+++...|+++++++|..-|.+..||+++++.+.. +++..+.
T Consensus 245 ~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGs 292 (412)
T KOG3881|consen 245 FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGS 292 (412)
T ss_pred cccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCC
Confidence 5578999999999999999999999999999999887544 5555544
No 220
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.38 E-value=3.1e-11 Score=104.29 Aligned_cols=138 Identities=16% Similarity=0.274 Sum_probs=92.5
Q ss_pred EEEeeCCCCCEEEEEecC--------CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEE--
Q 037120 160 AVRWNLANQDEVACASTR--------SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIA-- 229 (489)
Q Consensus 160 ~v~~~~~~~~~l~s~~~d--------~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-- 229 (489)
.+.|++.|..+++....+ -+...+|.++.... +...+. .....+|.+++|+|++. .|+.
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~---------l~~~~~I~~~~WsP~g~-~favi~ 78 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIE---------LKKEGPIHDVAWSPNGN-EFAVIY 78 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceee---------ccCCCceEEEEECcCCC-EEEEEE
Confidence 388999998877766521 13466666643221 111111 11234699999999999 6543
Q ss_pred EeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC---CCeEEEEEcCCCcccceeecCCccCCCCee
Q 037120 230 SDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK---HGSIYLWDLRGGRTSAPFHNHKEVCHLPLT 306 (489)
Q Consensus 230 ~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~---dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 306 (489)
|..++.|.+||++. + .+..+ +...++.+.|+|+|+++++++. .|.|.+||+++.+.+..++.. . ++
T Consensus 79 g~~~~~v~lyd~~~-~--~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~--~----~t 147 (194)
T PF08662_consen 79 GSMPAKVTLYDVKG-K--KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS--D----AT 147 (194)
T ss_pred ccCCcccEEEcCcc-c--EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC--c----EE
Confidence 34678999999973 2 23333 3567899999999999999975 577999999987766665432 2 66
Q ss_pred EEEeCCCCcceee
Q 037120 307 SLKLASMLEKIGT 319 (489)
Q Consensus 307 ~l~~~~~~~~i~~ 319 (489)
.++|+|+|+++++
T Consensus 148 ~~~WsPdGr~~~t 160 (194)
T PF08662_consen 148 DVEWSPDGRYLAT 160 (194)
T ss_pred EEEEcCCCCEEEE
Confidence 6777766666653
No 221
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.2e-10 Score=104.21 Aligned_cols=127 Identities=13% Similarity=0.192 Sum_probs=97.3
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEE
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLI 228 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 228 (489)
.+|++. |.++.|+.+++ .|++|+.| ..+++|++...--. ++-+++. .....|...|.+++|...+. .++
T Consensus 53 ~~H~GC---iNAlqFS~N~~-~L~SGGDD-~~~~~W~~de~~~~--k~~KPI~---~~~~~H~SNIF~L~F~~~N~-~~~ 121 (609)
T KOG4227|consen 53 REHTGC---INALQFSHNDR-FLASGGDD-MHGRVWNVDELMVR--KTPKPIG---VMEHPHRSNIFSLEFDLENR-FLY 121 (609)
T ss_pred hhhccc---cceeeeccCCe-EEeecCCc-ceeeeechHHHHhh--cCCCCce---eccCccccceEEEEEccCCe-eEe
Confidence 556666 89999999864 88888887 99999999432110 1111122 11255778999999998777 999
Q ss_pred EEeCCCcEEEEECCCCCcCceeeccCCC---CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCc
Q 037120 229 ASDTHGVVNIWDRRVGVLPSLELSTGSH---GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR 289 (489)
Q Consensus 229 s~s~dg~i~iwd~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~ 289 (489)
+|..+++|.+-|+.+.+ .+..+ .|. +.|+.+..+|..+.+++.+.+|.|.+||.+...
T Consensus 122 SG~~~~~VI~HDiEt~q--si~V~-~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 122 SGERWGTVIKHDIETKQ--SIYVA-NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred cCCCcceeEeeecccce--eeeee-cccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 99999999999999876 33222 444 589999999999999999999999999999754
No 222
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=5.9e-11 Score=116.64 Aligned_cols=118 Identities=14% Similarity=0.127 Sum_probs=77.9
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC---CcEEEEECCCCCcCceeeccCC
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH---GVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~h 255 (489)
..|.+||..... .. .+..|...+.+.+|+|+|+ .|+.++.+ ..|++||+.+++...+....+|
T Consensus 184 ~~i~i~d~dg~~---------~~----~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~ 249 (429)
T PRK01742 184 YEVRVADYDGFN---------QF----IVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVASFRGH 249 (429)
T ss_pred EEEEEECCCCCC---------ce----EeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEecCCCc
Confidence 689999983221 11 1244667899999999999 77776643 4799999988753334333333
Q ss_pred CCceeEEEEeecCCEEEEEe-CCCeEEEE--EcCCCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 256 HGTLNSIQLHAENQIIFAAG-KHGSIYLW--DLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~-~dg~i~lw--d~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
...++|+|+|+.|+.++ .+|.+.|| |+.+++ +..+..+... +....|+|||+.+.
T Consensus 250 ---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~----~~~~~wSpDG~~i~ 307 (429)
T PRK01742 250 ---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGN----NTEPSWSPDGQSIL 307 (429)
T ss_pred ---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCC----cCCEEECCCCCEEE
Confidence 34689999999888875 47765555 665544 3444444434 66777777776553
No 223
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=7.3e-11 Score=115.86 Aligned_cols=163 Identities=15% Similarity=0.139 Sum_probs=104.0
Q ss_pred cCCCceeEEEECCCCcEEEEEecC---CeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRS---GCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~d---g~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... .. .... +.+.+|+|++..+
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l---------~~------~~g~---~~~~~~SPDG~~l 254 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV---------AN------FKGS---NSAPAWSPDGRTL 254 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe---------ec------CCCC---ccceEECCCCCEE
Confidence 344568899999999999887753 4599999987433220 00 1111 4568999999866
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEEC--CCCCcC
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWDR--RVGVLP 247 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~--~~~~~~ 247 (489)
+++.+.+ |...||.+....... . .+..+........|+|||+ .|+..+ .+|...||.+ ..++..
T Consensus 255 a~~~~~~-g~~~Iy~~d~~~~~~-------~----~lt~~~~~~~~~~wSpDG~-~l~f~s~~~g~~~Iy~~~~~~g~~~ 321 (427)
T PRK02889 255 AVALSRD-GNSQIYTVNADGSGL-------R----RLTQSSGIDTEPFFSPDGR-SIYFTSDRGGAPQIYRMPASGGAAQ 321 (427)
T ss_pred EEEEccC-CCceEEEEECCCCCc-------E----ECCCCCCCCcCeEEcCCCC-EEEEEecCCCCcEEEEEECCCCceE
Confidence 6676766 887888764322111 1 1123344556788999999 555444 4566666655 443311
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCC---eEEEEEcCCCcc
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHG---SIYLWDLRGGRT 290 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg---~i~lwd~~~~~~ 290 (489)
.+ ..+.......+|+|+|++++.++.++ .|++||+.+++.
T Consensus 322 ~l---t~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 322 RV---TFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred EE---ecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence 12 11223345678999999998776643 699999988653
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=2.3e-10 Score=112.83 Aligned_cols=184 Identities=10% Similarity=-0.029 Sum_probs=117.6
Q ss_pred ccCCCceeEEEECCCCcEEEEEec---CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCC
Q 037120 93 SFGKPGISALDFDCKGIYLVSATR---SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~---dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~ 169 (489)
..+...+.+.+|+|||+.|+..+. +..|.+||+.++.... + ..+... +.+.+|+|++..
T Consensus 198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~---------l------~~~~g~---~~~~~~SPDG~~ 259 (435)
T PRK05137 198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL---------V------GNFPGM---TFAPRFSPDGRK 259 (435)
T ss_pred ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE---------e------ecCCCc---ccCcEECCCCCE
Confidence 344556999999999999988764 4689999998743322 1 111112 566899999987
Q ss_pred EEEEEecCCCE--EEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCC--cEEEEECCCC
Q 037120 170 EVACASTRSNV--VSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THG--VVNIWDRRVG 244 (489)
Q Consensus 170 ~l~s~~~d~g~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg--~i~iwd~~~~ 244 (489)
++++.+.+ +. |.+||+... . + . .+..+........|+|+|. .|+..+ .+| .|++||+..+
T Consensus 260 la~~~~~~-g~~~Iy~~d~~~~--~----~---~----~Lt~~~~~~~~~~~spDG~-~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 260 VVMSLSQG-GNTDIYTMDLRSG--T----T---T----RLTDSPAIDTSPSYSPDGS-QIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred EEEEEecC-CCceEEEEECCCC--c----e---E----EccCCCCccCceeEcCCCC-EEEEEECCCCCCeEEEEECCCC
Confidence 77776655 54 666677322 1 1 1 1133444567789999999 666555 333 6888898765
Q ss_pred CcCceeeccCCCCceeEEEEeecCCEEEEEeCC---CeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 245 VLPSLELSTGSHGTLNSIQLHAENQIIFAAGKH---GSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 245 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d---g~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
+. . .+..+...+....|+|+|+.++..+.+ ..|.+||+.++.. ..+.. ... +..+.|+|||+.+.
T Consensus 325 ~~--~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~----~~~p~~spDG~~i~ 392 (435)
T PRK05137 325 NP--R-RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFL----VEGPTWAPNGRVIM 392 (435)
T ss_pred Ce--E-EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCC----CCCCeECCCCCEEE
Confidence 42 2 222334556778999999999887652 4688889765432 22221 112 55667777777664
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.32 E-value=4.2e-11 Score=104.93 Aligned_cols=135 Identities=12% Similarity=0.102 Sum_probs=94.2
Q ss_pred EEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 037120 161 VRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD 240 (489)
Q Consensus 161 v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd 240 (489)
.+|+|++. .+++.+ +-.+.|-|..+. ++.+... --+.|.-+.|..+..+.+.....|+.|.+|+
T Consensus 14 c~fSp~g~-yiAs~~--~yrlviRd~~tl-----q~~qlf~--------cldki~yieW~ads~~ilC~~yk~~~vqvws 77 (447)
T KOG4497|consen 14 CSFSPCGN-YIASLS--RYRLVIRDSETL-----QLHQLFL--------CLDKIVYIEWKADSCHILCVAYKDPKVQVWS 77 (447)
T ss_pred eeECCCCC-eeeeee--eeEEEEeccchh-----hHHHHHH--------HHHHhhheeeeccceeeeeeeeccceEEEEE
Confidence 68999986 777777 467777777221 1111111 1236778899988886677777999999999
Q ss_pred CCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 241 RRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
+...+.-|. +.....++.+++|+|+|+.++..+. |-.|.+|.+.+.+.. -++-.+.. +..++|+|||++.+
T Consensus 78 l~Qpew~ck--Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~~~~pK~~----~kg~~f~~dg~f~a 149 (447)
T KOG4497|consen 78 LVQPEWYCK--IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-LLPHPKTN----VKGYAFHPDGQFCA 149 (447)
T ss_pred eecceeEEE--eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-EecccccC----ceeEEECCCCceee
Confidence 998774433 3345688999999999988888777 999999999986542 22211222 67777777776653
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1.7e-10 Score=113.17 Aligned_cols=183 Identities=10% Similarity=0.036 Sum_probs=114.5
Q ss_pred CCCceeEEEECCCCcEEEEEec---CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 95 GKPGISALDFDCKGIYLVSATR---SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~---dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+...+.+.+|||||+.||..+. +..|.+|++.+++.... ..+.++ +.+++|+|++..++
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l------------~~~~~~------~~~~~~SPDG~~La 258 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV------------ASFPRH------NGAPAFSPDGSKLA 258 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc------------cCCCCC------cCCeEECCCCCEEE
Confidence 3345889999999999987653 45789999877432220 011111 34589999998666
Q ss_pred EEEecCCC--EEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC-CCc--EEEEECCCCCc
Q 037120 172 ACASTRSN--VVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT-HGV--VNIWDRRVGVL 246 (489)
Q Consensus 172 ~s~~~d~g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~ 246 (489)
++.+.+ | .|.+||+..+. +. . +..+...+....|+|+|+ .|+..+. ++. |.++|+.+++
T Consensus 259 ~~~~~~-g~~~I~~~d~~tg~------~~---~----lt~~~~~~~~~~wSPDG~-~I~f~s~~~g~~~Iy~~d~~~g~- 322 (429)
T PRK03629 259 FALSKT-GSLNLYVMDLASGQ------IR---Q----VTDGRSNNTEPTWFPDSQ-NLAYTSDQAGRPQVYKVNINGGA- 322 (429)
T ss_pred EEEcCC-CCcEEEEEECCCCC------EE---E----ccCCCCCcCceEECCCCC-EEEEEeCCCCCceEEEEECCCCC-
Confidence 665544 4 58888884321 11 0 122334677899999999 6665554 444 4455666654
Q ss_pred CceeeccCCCCceeEEEEeecCCEEEEEeC-C--CeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceee
Q 037120 247 PSLELSTGSHGTLNSIQLHAENQIIFAAGK-H--GSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 247 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-d--g~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
.. .+..+........|+|+|++++..+. + ..|.+||+.+++. ..+.. ... .....|+|||+.+..
T Consensus 323 -~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~-~~~----~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 323 -PQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTD-TFL----DETPSIAPNGTMVIY 390 (429)
T ss_pred -eE-EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCC-CCC----CCCceECCCCCEEEE
Confidence 22 22233345567899999999887765 2 4688999988753 23322 111 345678888887754
No 227
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=3.5e-10 Score=101.59 Aligned_cols=251 Identities=14% Similarity=0.174 Sum_probs=158.5
Q ss_pred CceeEEEECCCC--cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 97 PGISALDFDCKG--IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 97 ~~V~~~~fs~~g--~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
..|..++|..++ ..|...+.|-.+..+.+....+... ........+.+.. |..++... ..|+++
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~--------~~~~~~~~l~~~~---I~gl~~~d---g~Litc 121 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS--------LDDAKTVSLGTKS---IKGLKLAD---GTLITC 121 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccc--------ccccccccccccc---ccchhhcC---CEEEEE
Confidence 447777887654 4555555676777777776444432 1000011112222 44454432 245555
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC--CcEEEEECCCCCcCceeec
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH--GVVNIWDRRVGVLPSLELS 252 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~ 252 (489)
-.+ |.+.+|....+........ ... -..++..+.-++..++++++|+.. ..+.+||+.+.+ +.+.-.
T Consensus 122 ~~s-G~l~~~~~k~~d~hss~l~-----~la----~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~-qiw~aK 190 (412)
T KOG3881|consen 122 VSS-GNLQVRHDKSGDLHSSKLI-----KLA----TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK-QIWSAK 190 (412)
T ss_pred ecC-CcEEEEeccCCccccccce-----eee----cCCceeeeccCCCCCceEecCchhcccceeeeecccce-eeeecc
Confidence 545 9999999964431111111 111 113677788888888788889988 889999999863 222111
Q ss_pred c------CC--CCceeEEEEeec--CCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccc
Q 037120 253 T------GS--HGTLNSIQLHAE--NQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKA 322 (489)
Q Consensus 253 ~------~h--~~~v~~~~~~p~--~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~ 322 (489)
. +- .-.++.+.|-+. ...+++++.-+.+|+||.+.++. ||.++.|.
T Consensus 191 NvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR-------------PV~~fd~~----------- 246 (412)
T KOG3881|consen 191 NVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR-------------PVAQFDFL----------- 246 (412)
T ss_pred CCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc-------------ceeEeccc-----------
Confidence 0 11 124568889887 77888888899999999997542 23333322
Q ss_pred cceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEee
Q 037120 323 QSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGS 402 (489)
Q Consensus 323 ~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 402 (489)
..+++++...|+ +.++++|
T Consensus 247 -----E~~is~~~l~p~--------------------------------------------------------gn~Iy~g 265 (412)
T KOG3881|consen 247 -----ENPISSTGLTPS--------------------------------------------------------GNFIYTG 265 (412)
T ss_pred -----cCcceeeeecCC--------------------------------------------------------CcEEEEe
Confidence 112233333232 4456666
Q ss_pred cCCCcEEEEeccCCCCCCeeeccCcccch-hhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 403 SSDHGIHLLDFFPGSSSPSHVDYNEDIES-LSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 403 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
..-+.+..+|++.+ ..+.. +. +..+.|.++..||..+++|+||.|..++|+..|.
T Consensus 266 n~~g~l~~FD~r~~----------kl~g~~~k------------g~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 266 NTKGQLAKFDLRGG----------KLLGCGLK------------GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cccchhheecccCc----------eeeccccC------------CccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 67778889999988 55544 55 8899999999999999999999999999998776
No 228
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.30 E-value=7.1e-09 Score=98.81 Aligned_cols=170 Identities=14% Similarity=0.115 Sum_probs=107.1
Q ss_pred eEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCC
Q 037120 100 SALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSN 179 (489)
Q Consensus 100 ~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g 179 (489)
..+.|+|||+++.+.+.||.|.++|+.+.+....- . .+..-..++++++++.++++.... +
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i--------~----------~G~~~~~i~~s~DG~~~~v~n~~~-~ 100 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI--------K----------VGGNPRGIAVSPDGKYVYVANYEP-G 100 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE--------E-----------SSEEEEEEE--TTTEEEEEEEET-T
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE--------e----------cCCCcceEEEcCCCCEEEEEecCC-C
Confidence 44679999999999999999999999996655421 0 011156699999998666666666 9
Q ss_pred EEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCcCceeeccCCCCc
Q 037120 180 VVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWDRRVGVLPSLELSTGSHGT 258 (489)
Q Consensus 180 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~h~~~ 258 (489)
.+.++|.... +.++..........+....+.+|..+|..+ .++..- +.+.|.+-|....+....+.+ .....
T Consensus 101 ~v~v~D~~tl-----e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~-~fVv~lkd~~~I~vVdy~d~~~~~~~~i-~~g~~ 173 (369)
T PF02239_consen 101 TVSVIDAETL-----EPVKTIPTGGMPVDGPESRVAAIVASPGRP-EFVVNLKDTGEIWVVDYSDPKNLKVTTI-KVGRF 173 (369)
T ss_dssp EEEEEETTT-------EEEEEE--EE-TTTS---EEEEEE-SSSS-EEEEEETTTTEEEEEETTTSSCEEEEEE-E--TT
T ss_pred ceeEeccccc-----cceeecccccccccccCCCceeEEecCCCC-EEEEEEccCCeEEEEEeccccccceeee-ccccc
Confidence 9999998332 333322211111122345778888888888 555554 458888889877543222222 23345
Q ss_pred eeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceee
Q 037120 259 LNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 259 v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~ 295 (489)
.....|+|++++++++.. ++.|-++|..+++.+..+.
T Consensus 174 ~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 174 PHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp EEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred ccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence 678899999999888755 7799999999987755554
No 229
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=2.6e-09 Score=105.46 Aligned_cols=140 Identities=13% Similarity=0.082 Sum_probs=91.1
Q ss_pred eeEEEeeCCCCCEEEEEec-CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCc-
Q 037120 158 LDAVRWNLANQDEVACAST-RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGV- 235 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~-d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~- 235 (489)
+.+.+|+|+++.++.+... ++..|.+||+..+.. ..+ ..+...+...+|+|+|+.++++.+.++.
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~---~~l----------~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 270 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR---ELV----------GNFPGMTFAPRFSPDGRKVVMSLSQGGNT 270 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---EEe----------ecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence 8889999999755554322 126899999943311 111 2234466788999999944556666665
Q ss_pred -EEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-C--CeEEEEEcCCCcccceeecCCccCCCCeeEEEeC
Q 037120 236 -VNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-H--GSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 236 -i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-d--g~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~ 311 (489)
|++||+.+++ .. .+..+........|+|+|+.++.++. + ..|++||+.+++. ..+...... +....|+
T Consensus 271 ~Iy~~d~~~~~--~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~----~~~~~~S 342 (435)
T PRK05137 271 DIYTMDLRSGT--TT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGR----YSTPVWS 342 (435)
T ss_pred eEEEEECCCCc--eE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCc----ccCeEEC
Confidence 7777988765 22 34445556678999999998887765 3 3688888776543 333322323 5556777
Q ss_pred CCCccee
Q 037120 312 SMLEKIG 318 (489)
Q Consensus 312 ~~~~~i~ 318 (489)
|+|+.++
T Consensus 343 pdG~~ia 349 (435)
T PRK05137 343 PRGDLIA 349 (435)
T ss_pred CCCCEEE
Confidence 7776664
No 230
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.28 E-value=3e-11 Score=126.68 Aligned_cols=162 Identities=15% Similarity=0.257 Sum_probs=122.7
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
+.|.++.=+|...+.++|+.||.|++|.+.....+..- .. .+. .. |+.+.|+.+|. .+..+..
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~------rt------~g~-s~---vtr~~f~~qGn-k~~i~d~ 2271 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCF------RT------AGN-SR---VTRSRFNHQGN-KFGIVDG 2271 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEe------ec------cCc-ch---hhhhhhcccCC-ceeeecc
Confidence 56889998999999999999999999999875444321 00 111 22 88899999986 4444444
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe---CCCcEEEEECCCCCcC-ceeec
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD---THGVVNIWDRRVGVLP-SLELS 252 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~-~~~~~ 252 (489)
| |.+.+|.+. +. .......|....++..|-. . .+++++ .++.+.+||....... ++.
T Consensus 2272 d-g~l~l~q~~-----pk--------~~~s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~-- 2332 (2439)
T KOG1064|consen 2272 D-GDLSLWQAS-----PK--------PYTSWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVH-- 2332 (2439)
T ss_pred C-CceeecccC-----Cc--------ceeccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceee--
Confidence 5 999999993 11 1122367999999999985 4 677776 6789999998765433 443
Q ss_pred cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCccccee
Q 037120 253 TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPF 294 (489)
Q Consensus 253 ~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~ 294 (489)
..|.+.++++++-|..+.+++||.+|.|++||++..+..+.+
T Consensus 2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHh
Confidence 699999999999999999999999999999999976544443
No 231
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.26 E-value=3.1e-10 Score=98.21 Aligned_cols=192 Identities=13% Similarity=0.033 Sum_probs=130.3
Q ss_pred CCceeEEEEC---CCCc-EEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 96 KPGISALDFD---CKGI-YLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 96 ~~~V~~~~fs---~~g~-~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
..++..+.|. .+|. .|+-+-.+|.|.+|......... .+.+.......... ..++.|++.+..++
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~--------~L~~ls~~ki~~~~---~lslD~~~~~~~i~ 137 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV--------HLRGLSSKKISVVE---ALSLDISTSGTKIF 137 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeee--------eecccchhhhhhee---eeEEEeeccCceEE
Confidence 3445555554 2455 56777789999999776532211 11111111111111 45788999887544
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++-+ + |.+.+-+. ....+...+.+ .+|.-.++..+|+...++++.+|+.|+.+..||+|.++.-..+.
T Consensus 138 vs~s-~-G~~~~v~~------t~~~le~vq~w----k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n 205 (339)
T KOG0280|consen 138 VSDS-R-GSISGVYE------TEMVLEKVQTW----KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN 205 (339)
T ss_pred EEcC-C-CcEEEEec------ceeeeeecccc----cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec
Confidence 4444 4 88885554 22344444444 88999999999999998899999999999999999665444555
Q ss_pred ccCCCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCC-CcccceeecCCccCCCCeeEEEeCCCCc
Q 037120 252 STGSHGTLNSIQLHA-ENQIIFAAGKHGSIYLWDLRG-GRTSAPFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p-~~~~l~~~~~dg~i~lwd~~~-~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
..-|...|.++.-+| ...++++|+.|-.|++||.|+ ++.+..-.. .+. |..+.++|...
T Consensus 206 ~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GG----VWRi~~~p~~~ 266 (339)
T KOG0280|consen 206 SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGG----VWRIKHHPEIF 266 (339)
T ss_pred ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-ccc----eEEEEecchhh
Confidence 668889999998887 466888888899999999996 444443332 344 89999888654
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=3.1e-09 Score=104.39 Aligned_cols=113 Identities=15% Similarity=0.159 Sum_probs=70.9
Q ss_pred eeEEEeeCCCCCEEEEEecC-CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcE
Q 037120 158 LDAVRWNLANQDEVACASTR-SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVV 236 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d-~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i 236 (489)
+.+.+|+|+++.++++...+ ...|.+||+..+.. ..+ ......+...+|+|||..++++.+.+|..
T Consensus 198 v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~---~~l----------~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 264 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR---RVV----------ANFKGSNSAPAWSPDGRTLAVALSRDGNS 264 (427)
T ss_pred cccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE---EEe----------ecCCCCccceEECCCCCEEEEEEccCCCc
Confidence 77899999997555444322 14699999943311 111 11122456789999999444567778876
Q ss_pred EEEEC--CCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcC
Q 037120 237 NIWDR--RVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLR 286 (489)
Q Consensus 237 ~iwd~--~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~ 286 (489)
.||.+ ..+. .+.+..+........|+|||+.++.++. +|...||.+.
T Consensus 265 ~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 265 QIYTVNADGSG---LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMP 314 (427)
T ss_pred eEEEEECCCCC---cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence 66654 4433 2233444555667899999998887765 5666666553
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=1.9e-09 Score=106.24 Aligned_cols=115 Identities=14% Similarity=0.165 Sum_probs=74.1
Q ss_pred eeEEEeeCCCCCEEEEEecC-CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC--
Q 037120 158 LDAVRWNLANQDEVACASTR-SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG-- 234 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d-~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg-- 234 (489)
+.+.+|+|+++.++++...+ ...|.+||+..+.. ..+ ..+.......+|+|+|+.++++.+.+|
T Consensus 206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~---~~l----------~~~~g~~~~~~~SpDG~~l~~~~s~~g~~ 272 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR---ELV----------ASFRGINGAPSFSPDGRRLALTLSRDGNP 272 (433)
T ss_pred cccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE---EEe----------ccCCCCccCceECCCCCEEEEEEeCCCCc
Confidence 77899999997555443221 24799999943311 111 112223457899999994445666665
Q ss_pred cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CCe--EEEEEcCCC
Q 037120 235 VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGS--IYLWDLRGG 288 (489)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~--i~lwd~~~~ 288 (489)
.|++||+.+++ .. .+..+.......+|+|+|+.++.++. +|. |+++|+.++
T Consensus 273 ~Iy~~d~~~g~--~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g 326 (433)
T PRK04922 273 EIYVMDLGSRQ--LT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG 326 (433)
T ss_pred eEEEEECCCCC--eE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 59999998876 22 33344455568899999999888775 444 556666554
No 234
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.22 E-value=1.7e-08 Score=88.52 Aligned_cols=145 Identities=14% Similarity=0.212 Sum_probs=100.1
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVV 236 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i 236 (489)
|.+|.+.++ .++..- .+.|.||...... +.+..... .....++.+++=+.... +|+.=| .-|.|
T Consensus 97 I~~V~l~r~---riVvvl--~~~I~VytF~~n~----k~l~~~et-----~~NPkGlC~~~~~~~k~-~LafPg~k~Gqv 161 (346)
T KOG2111|consen 97 IKAVKLRRD---RIVVVL--ENKIYVYTFPDNP----KLLHVIET-----RSNPKGLCSLCPTSNKS-LLAFPGFKTGQV 161 (346)
T ss_pred eeeEEEcCC---eEEEEe--cCeEEEEEcCCCh----hheeeeec-----ccCCCceEeecCCCCce-EEEcCCCccceE
Confidence 888999887 556666 4799999984321 22222221 11223344443222222 333333 66999
Q ss_pred EEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCe-EEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCc
Q 037120 237 NIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGS-IYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 237 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~-i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
+|-|+...+...-..+.+|.+.|.|++++-+|..+++++..|+ |||||..+|..+.++..-... ..|.+++|+|+..
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~--A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR--ADIYCIAFSPNSS 239 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch--heEEEEEeCCCcc
Confidence 9999998664212356799999999999999999999999776 899999999998888743322 4589999999998
Q ss_pred ceee
Q 037120 316 KIGT 319 (489)
Q Consensus 316 ~i~~ 319 (489)
.++-
T Consensus 240 ~Lav 243 (346)
T KOG2111|consen 240 WLAV 243 (346)
T ss_pred EEEE
Confidence 8864
No 235
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1e-08 Score=101.17 Aligned_cols=116 Identities=14% Similarity=0.111 Sum_probs=73.8
Q ss_pred eeEEEeeCCCCCEEEEEecC-CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCc-
Q 037120 158 LDAVRWNLANQDEVACASTR-SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGV- 235 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d-~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~- 235 (489)
+.+..|+|+++.++.+...+ ...|.+||+..+. . ..+. .+.+ .....+|+|+|+.++++.+.++.
T Consensus 220 ~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~--~-~~lt-------~~~g---~~~~~~wSPDG~~La~~~~~~g~~ 286 (448)
T PRK04792 220 LMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV--R-EKVT-------SFPG---INGAPRFSPDGKKLALVLSKDGQP 286 (448)
T ss_pred ccCceECCCCCEEEEEEecCCCcEEEEEECCCCC--e-EEec-------CCCC---CcCCeeECCCCCEEEEEEeCCCCe
Confidence 77799999998665554433 1358888884321 1 1111 1122 23467999999944455666665
Q ss_pred -EEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CC--eEEEEEcCCCc
Q 037120 236 -VNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HG--SIYLWDLRGGR 289 (489)
Q Consensus 236 -i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg--~i~lwd~~~~~ 289 (489)
|++||+.+++ . +.+..+.......+|+|+|+.++..+. ++ .|+++|+.+++
T Consensus 287 ~Iy~~dl~tg~--~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 287 EIYVVDIATKA--L-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK 341 (448)
T ss_pred EEEEEECCCCC--e-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 7778888765 2 233344455678899999998877765 33 57777777665
No 236
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.21 E-value=8.8e-10 Score=104.26 Aligned_cols=175 Identities=11% Similarity=0.141 Sum_probs=129.5
Q ss_pred CCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEee------C-------------
Q 037120 105 DCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWN------L------------- 165 (489)
Q Consensus 105 s~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~------~------------- 165 (489)
+|.+.++|..+.||.++|||....+.... +.+ ..|...- .++..|. |
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e--------~~p----~~~~s~t--~~~~~w~L~~~~s~~k~~~~~~~~~~s 67 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQE--------FAP----IASLSGT--CTYTKWGLSADYSPMKWLSLEKAKKAS 67 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeee--------ecc----chhccCc--ceeEEEEEEeccchHHHHhHHHHhhcc
Confidence 46678999999999999999988544332 111 1121110 3334442 1
Q ss_pred CCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 037120 166 ANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGV 245 (489)
Q Consensus 166 ~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 245 (489)
.+..+++-|... |.|.+|++..+ ++- +.....+|.+.|+++.++.+-. .|.+++.|+.+..|+.....
T Consensus 68 ~~t~~lvlgt~~-g~v~~ys~~~g-----~it-----~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~ 135 (541)
T KOG4547|consen 68 LDTSMLVLGTPQ-GSVLLYSVAGG-----EIT-----AKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKV 135 (541)
T ss_pred CCceEEEeecCC-ccEEEEEecCC-----eEE-----EEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccce
Confidence 123356666666 99999999433 111 1111267999999999998777 99999999999999998866
Q ss_pred cCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCC
Q 037120 246 LPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 246 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 313 (489)
.+.........+.+++.+||+..+++++ +.|++||+.+.+.+..|.+|.+. |++++|-.+
T Consensus 136 --~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~----v~t~~f~~~ 195 (541)
T KOG4547|consen 136 --IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSP----VRTLSFTTL 195 (541)
T ss_pred --eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcc----eEEEEEEEe
Confidence 4555556677889999999999998887 58999999999999999999977 999999877
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.19 E-value=1.4e-09 Score=107.20 Aligned_cols=159 Identities=14% Similarity=0.061 Sum_probs=104.4
Q ss_pred CCceeEEEECCCCcEEEEEecC---CeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 96 KPGISALDFDCKGIYLVSATRS---GCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~d---g~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
...+...+|+|||++||.++.+ ..|++||+.+...... ..+... +.+++|+|++..+++
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~---------------~~~~~~---~~~~~~spDg~~l~~ 250 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV---------------ASFPGM---NGAPAFSPDGSKLAV 250 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe---------------ecCCCC---ccceEECCCCCEEEE
Confidence 3458888999999999988754 4799999987432210 111112 556899999986766
Q ss_pred EEecC-CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCC--cEEEEECCCCCcCc
Q 037120 173 CASTR-SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THG--VVNIWDRRVGVLPS 248 (489)
Q Consensus 173 s~~~d-~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg--~i~iwd~~~~~~~~ 248 (489)
+.+.+ ...|.+||+..... .. +..+........|+|+++ .|+.++ .++ .|+++|+.+++ .
T Consensus 251 ~~~~~~~~~i~~~d~~~~~~---~~----------l~~~~~~~~~~~~s~dg~-~l~~~s~~~g~~~iy~~d~~~~~--~ 314 (417)
T TIGR02800 251 SLSKDGNPDIYVMDLDGKQL---TR----------LTNGPGIDTEPSWSPDGK-SIAFTSDRGGSPQIYMMDADGGE--V 314 (417)
T ss_pred EECCCCCccEEEEECCCCCE---EE----------CCCCCCCCCCEEECCCCC-EEEEEECCCCCceEEEEECCCCC--E
Confidence 66544 13588888743210 10 122333445678999998 665554 333 57888887655 2
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeCCC---eEEEEEcCCCc
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGKHG---SIYLWDLRGGR 289 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg---~i~lwd~~~~~ 289 (489)
. .+..+...+....|+|+|++++.++.++ .|.+||+.++.
T Consensus 315 ~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 315 R-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred E-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 2 2333455677889999999999888765 78899988743
No 238
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.18 E-value=1.4e-10 Score=106.18 Aligned_cols=195 Identities=17% Similarity=0.182 Sum_probs=133.9
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..|..+.|-|..-+|++++..|.++.-|+.++..+... .. -.+. +..++-+|-+. ++-.|..
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~--------~t------~~G~---~~vm~qNP~Na-Vih~Ghs 271 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI--------RT------GAGR---TDVMKQNPYNA-VIHLGHS 271 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHH--------Hc------cCCc---cchhhcCCccc-eEEEcCC
Confidence 45888999999999999999999999999986665531 11 1111 66688899875 7777777
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
+ |+|.+|..... .....+..|.++|.+|++.++|. +++|++.|..|+|||+|.-..+ . .... .
T Consensus 272 n-GtVSlWSP~sk------------ePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~ql-~-t~~t-p 334 (545)
T KOG1272|consen 272 N-GTVSLWSPNSK------------EPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFYQL-H-TYRT-P 334 (545)
T ss_pred C-ceEEecCCCCc------------chHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeecccccc-c-eeec-C
Confidence 7 99999988321 12222356999999999999999 9999999999999999986532 1 2211 2
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEE-cCCCc--ccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeE
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWD-LRGGR--TSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHS 333 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd-~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~ 333 (489)
.+...+++|..| +++.+....|.||- .-.+. .-..+..|.-. .+|..|.|+|-...++- .+...+++
T Consensus 335 ~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~--~~V~~l~FcP~EDvLGI------GH~~G~ts 404 (545)
T KOG1272|consen 335 HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCG--GPVEDLRFCPYEDVLGI------GHAGGITS 404 (545)
T ss_pred CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccC--cccccceeccHHHeeec------cccCCcee
Confidence 456677887665 45556666899994 32222 11222233322 46999999998776652 34445555
Q ss_pred EEe
Q 037120 334 IDL 336 (489)
Q Consensus 334 ~~~ 336 (489)
|-+
T Consensus 405 ilV 407 (545)
T KOG1272|consen 405 ILV 407 (545)
T ss_pred Eec
Confidence 544
No 239
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.17 E-value=5.7e-09 Score=99.44 Aligned_cols=270 Identities=14% Similarity=0.154 Sum_probs=140.5
Q ss_pred CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 169 DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 169 ~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
++++....++|.|.+.|... .+.+.... .+ ...-..+.|+||++ +++.++.||.|.++|+.+.+ .
T Consensus 6 ~l~~V~~~~~~~v~viD~~t-----~~~~~~i~------~~-~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~--~ 70 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGAT-----NKVVARIP------TG-GAPHAGLKFSPDGR-YLYVANRDGTVSVIDLATGK--V 70 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT------SEEEEEE-------S-TTEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSS--E
T ss_pred cEEEEEecCCCEEEEEECCC-----CeEEEEEc------CC-CCceeEEEecCCCC-EEEEEcCCCeEEEEECCccc--E
Confidence 35544443349999999832 23333322 11 11234577999999 78888899999999999977 5
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceeecCCcc---CCCCeeEEEeCCCCc-ceeecccc
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEV---CHLPLTSLKLASMLE-KIGTLKAQ 323 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~---~~~~v~~l~~~~~~~-~i~~~~~~ 323 (489)
+..... ......++++++|++++++.. ++.+.++|.++.+.++.+...... ....+.++..+|... ++..++..
T Consensus 71 v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~ 149 (369)
T PF02239_consen 71 VATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT 149 (369)
T ss_dssp EEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT
T ss_pred EEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC
Confidence 555443 334678999999999999876 999999999999888777643211 012367777777765 44333211
Q ss_pred ce-----------------eeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccC-
Q 037120 324 SK-----------------IVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLH- 385 (489)
Q Consensus 324 ~~-----------------~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 385 (489)
.. ..........++|+++|+++.........+++..++........ .-.+.+- ....+.
T Consensus 150 ~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~--g~~p~~~-~~~~~ph 226 (369)
T PF02239_consen 150 GEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDT--GKKPHPG-PGANFPH 226 (369)
T ss_dssp TEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE---SSSBEET-TEEEEEE
T ss_pred CeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeec--ccccccc-ccccccC
Confidence 11 11233566789999999888765555334444433322221100 0000000 000000
Q ss_pred -CCcceeecCC-cEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeE
Q 037120 386 -LRKPSWLSTN-SIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTI 463 (489)
Q Consensus 386 -~~~~~~~~~~-~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i 463 (489)
...+.|...+ +.++++.-....+.+||...- +.++.+. ...++ .-+..||+++++
T Consensus 227 p~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w----------kvv~~I~------------~~G~g-lFi~thP~s~~v 283 (369)
T PF02239_consen 227 PGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW----------KVVKTIP------------TQGGG-LFIKTHPDSRYV 283 (369)
T ss_dssp TTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT----------SEEEEEE-------------SSSS---EE--TT-SEE
T ss_pred CCcceEEeeccccceecccccCCccccchhhcC----------eEEEEEE------------CCCCc-ceeecCCCCccE
Confidence 0112232221 112212122234445666655 6666665 44445 778999999988
Q ss_pred Eec----cCcceeEEEecccc
Q 037120 464 VAG----TKNSSLLVVSQKQQ 480 (489)
Q Consensus 464 ~sg----s~dg~i~v~~~~~~ 480 (489)
.+. ..++.|.|+..+..
T Consensus 284 wvd~~~~~~~~~v~viD~~tl 304 (369)
T PF02239_consen 284 WVDTFLNPDADTVQVIDKKTL 304 (369)
T ss_dssp EEE-TT-SSHT-EEEEECCGT
T ss_pred EeeccCCCCCceEEEEECcCc
Confidence 877 56789999887765
No 240
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=1e-09 Score=101.22 Aligned_cols=276 Identities=15% Similarity=0.174 Sum_probs=165.1
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC-cEE
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT-SRL 227 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l 227 (489)
..|.+. |..|.|+..+. .+++++.| ..|.+||....... ... -.+|...|-...|.|... ..+
T Consensus 139 ~~H~Gc---VntV~FN~~Gd-~l~SgSDD-~~vv~WdW~~~~~~-------l~f----~SGH~~NvfQaKFiP~s~d~ti 202 (559)
T KOG1334|consen 139 NKHKGC---VNTVHFNQRGD-VLASGSDD-LQVVVWDWVSGSPK-------LSF----ESGHCNNVFQAKFIPFSGDRTI 202 (559)
T ss_pred cCCCCc---cceeeecccCc-eeeccCcc-ceEEeehhhccCcc-------ccc----ccccccchhhhhccCCCCCcCc
Confidence 345555 77899999986 88999988 99999999433211 111 177888888888888543 379
Q ss_pred EEEeCCCcEEEEECCCCCcC-ceeeccCCCCceeEEEEeecCCE-EEEEeCCCeEEEEEcCCCcccceeecCCccCCCCe
Q 037120 228 IASDTHGVVNIWDRRVGVLP-SLELSTGSHGTLNSIQLHAENQI-IFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPL 305 (489)
Q Consensus 228 ~s~s~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~-l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v 305 (489)
++++.||.|++=.+-..... -.+....|.+.|..++.-|+..+ ++++|.|+.+.-+|++....-..+......
T Consensus 203 ~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~----- 277 (559)
T KOG1334|consen 203 VTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREAD----- 277 (559)
T ss_pred eeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccC-----
Confidence 99999999998766543322 23345589999999999998776 566677999999999987652222211000
Q ss_pred eEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccce------eeecCCCCCCcCCCCc
Q 037120 306 TSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRV------SHVHCPPPAWLSDSNN 379 (489)
Q Consensus 306 ~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 379 (489)
.. ..-....++..|...+.++.+..+.+.++.+....+. ...+|+......+
T Consensus 278 --------~~-----------~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~--- 335 (559)
T KOG1334|consen 278 --------EK-----------ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDD--- 335 (559)
T ss_pred --------Cc-----------cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccC---
Confidence 00 0012345556666654444433333333333322221 1223332221111
Q ss_pred cccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCC-Ceeecc-CcccchhhHhhhhcccCCcccCCC--ceEEEE
Q 037120 380 SADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSS-PSHVDY-NEDIESLSERTKLKKENRFVPLSE--GVTACV 455 (489)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~--~V~~va 455 (489)
...+..+.|+.+++.++++ -.|-.|+++.-.-+... +..... ...++. .+.||.. .|-+|-
T Consensus 336 ---~v~ITgl~Ysh~~sElLaS-YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~-----------vYKGHrN~~TVKgVN 400 (559)
T KOG1334|consen 336 ---PVNITGLVYSHDGSELLAS-YNDEDIYLFNKSMGDGSEPDPSSPREQYVKR-----------VYKGHRNSRTVKGVN 400 (559)
T ss_pred ---cccceeEEecCCccceeee-ecccceEEeccccccCCCCCCCcchhhccch-----------hhcccccccccceee
Confidence 1233445566666776666 57778999954433110 000000 011111 1347854 466666
Q ss_pred e-eCCCCeEEeccCcceeEEEecccccc
Q 037120 456 T-HPLNNTIVAGTKNSSLLVVSQKQQCT 482 (489)
Q Consensus 456 ~-~p~~~~i~sgs~dg~i~v~~~~~~~~ 482 (489)
| -|...++++||.=|.|+||.+|...+
T Consensus 401 FfGPrsEyVvSGSDCGhIFiW~K~t~ei 428 (559)
T KOG1334|consen 401 FFGPRSEYVVSGSDCGHIFIWDKKTGEI 428 (559)
T ss_pred eccCccceEEecCccceEEEEecchhHH
Confidence 6 57778999999999999998876544
No 241
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.12 E-value=7e-10 Score=107.22 Aligned_cols=183 Identities=21% Similarity=0.366 Sum_probs=133.8
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCC--CCEEEEE
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLAN--QDEVACA 174 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~--~~~l~s~ 174 (489)
.++.++..+|.|+-+|.++.-| +.+-|+... ..+ . ...|....+.|-.+.|+|.. ..-+++.
T Consensus 25 ~~~~a~si~p~grdi~lAsr~g-l~i~dld~p-------------~~p-p-r~l~h~tpw~vad~qws~h~a~~~wiVst 88 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQG-LYIIDLDDP-------------FTP-P-RWLHHITPWQVADVQWSPHPAKPYWIVST 88 (1081)
T ss_pred CcccceeeccccchhhhhhhcC-eEEEeccCC-------------CCC-c-eeeeccCcchhcceecccCCCCceeEEec
Confidence 4688899999999999999877 556677761 111 1 13344445567789998764 3345555
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
+ ...-.+|++....... ....+.+|+.+|+++-|+|+.+..+++++.|-.+..||+++...+......-
T Consensus 89 s--~qkaiiwnlA~ss~~a---------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w 157 (1081)
T KOG0309|consen 89 S--NQKAIIWNLAKSSSNA---------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW 157 (1081)
T ss_pred C--cchhhhhhhhcCCccc---------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc
Confidence 5 3577899995443331 1112489999999999999999999999999999999999987764433323
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeC
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~ 311 (489)
......++|+-....+++.+..+.|++||++.|.. +..+++|... |..+.|.
T Consensus 158 -~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~----vn~~~fn 210 (1081)
T KOG0309|consen 158 -RSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSS----VNSIDFN 210 (1081)
T ss_pred -cccCceeeecccCcchhhhccCCceEEEeccCCCcceEEeccccee----eehHHHh
Confidence 34567899999888888888888999999999765 7777777655 6666554
No 242
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=5.7e-07 Score=80.89 Aligned_cols=224 Identities=11% Similarity=0.059 Sum_probs=134.4
Q ss_pred CCCceeEEEECCCCcEEEEEec---CCeEEEEeCCCc--ccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCC
Q 037120 95 GKPGISALDFDCKGIYLVSATR---SGCLTVHDFESL--YYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~---dg~i~vwd~~~~--~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~ 169 (489)
.....+=++|+|+++.|-++-. +|.|..|.++.. +....+ +. ...+.+-+.++++++++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln----------~~-----~~~g~~p~yvsvd~~g~- 101 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN----------RQ-----TLPGSPPCYVSVDEDGR- 101 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee----------cc-----ccCCCCCeEEEECCCCC-
Confidence 3345788999999988887765 478888888751 211110 00 00111135599999987
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecC-Cc----ccCeeEEEEecCCCcEEEEEe-CCCcEEEEECCC
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGS-DV----QKGLSDLAFSAVNTSRLIASD-THGVVNIWDRRV 243 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~h----~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~ 243 (489)
+++++....|.|.++-++... ..... .....++.. .| +.-+....+.|+++ +|++.+ .--.|.+|++..
T Consensus 102 ~vf~AnY~~g~v~v~p~~~dG-~l~~~---v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~y~~~d 176 (346)
T COG2706 102 FVFVANYHSGSVSVYPLQADG-SLQPV---VQVVKHTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRIFLYDLDD 176 (346)
T ss_pred EEEEEEccCceEEEEEcccCC-ccccc---eeeeecCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceEEEEEccc
Confidence 666666666999999996531 11111 111111111 11 11178889999999 777776 344788999997
Q ss_pred CCcCce-eeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCC-cccceeecCCc---cC--CCCeeEEEeCCCCc
Q 037120 244 GVLPSL-ELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGG-RTSAPFHNHKE---VC--HLPLTSLKLASMLE 315 (489)
Q Consensus 244 ~~~~~~-~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~-~~~~~~~~~~~---~~--~~~v~~l~~~~~~~ 315 (489)
+..... .........-..|.|+|++++.++.+. +++|-+|..... ..+..++.+.. .. .....++.+++||+
T Consensus 177 g~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr 256 (346)
T COG2706 177 GKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGR 256 (346)
T ss_pred CccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCC
Confidence 653311 111133456688999999999999999 999999999873 22333222110 00 12256777777877
Q ss_pred ceeeccccceeeccceeEEEeCCCCCeE
Q 037120 316 KIGTLKAQSKIVSQEIHSIDLDPSCSYQ 343 (489)
Q Consensus 316 ~i~~~~~~~~~~~~~i~~~~~~p~~~~~ 343 (489)
++....... ..|....++|++..+
T Consensus 257 FLYasNRg~----dsI~~f~V~~~~g~L 280 (346)
T COG2706 257 FLYASNRGH----DSIAVFSVDPDGGKL 280 (346)
T ss_pred EEEEecCCC----CeEEEEEEcCCCCEE
Confidence 775332221 245566666665543
No 243
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.09 E-value=1.3e-09 Score=109.45 Aligned_cols=151 Identities=17% Similarity=0.232 Sum_probs=120.5
Q ss_pred EEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCE
Q 037120 101 ALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNV 180 (489)
Q Consensus 101 ~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~ 180 (489)
-+-++++.-++++|+.-+.|.+|+... -..+....+|.+. |.++.|+.++. .+++.++| .+
T Consensus 138 ~~g~s~~~~~i~~gsv~~~iivW~~~~--------------dn~p~~l~GHeG~---iF~i~~s~dg~-~i~s~SdD-Rs 198 (967)
T KOG0974|consen 138 IIGDSAEELYIASGSVFGEIIVWKPHE--------------DNKPIRLKGHEGS---IFSIVTSLDGR-YIASVSDD-RS 198 (967)
T ss_pred EEeccCcEEEEEeccccccEEEEeccc--------------cCCcceecccCCc---eEEEEEccCCc-EEEEEecC-cc
Confidence 445677888999999999999999873 1111245788888 88899999985 88899988 99
Q ss_pred EEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC-Cce
Q 037120 181 VSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH-GTL 259 (489)
Q Consensus 181 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~-~~v 259 (489)
+++|++.... .+. .+.-+|+..|+.+.|.|. .++|++.|.+.++|+..-.. ++.+..|. ..|
T Consensus 199 iRlW~i~s~~-----~~~------~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~---l~~y~~h~g~~i 261 (967)
T KOG0974|consen 199 IRLWPIDSRE-----VLG------CTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQ---LEVYDEHSGKGI 261 (967)
T ss_pred eeeeeccccc-----ccC------cccccccceeEEEEeccc---eeEEeccceEEEEEecccce---ehhhhhhhhcce
Confidence 9999994432 211 234789999999999986 69999999999999766433 33555554 568
Q ss_pred eEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 260 NSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 260 ~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
..++..+....+++++.||.+++||+..
T Consensus 262 w~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 262 WKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 8999999999999999999999999875
No 244
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=9.1e-08 Score=94.60 Aligned_cols=116 Identities=12% Similarity=0.141 Sum_probs=74.4
Q ss_pred eeEEEeeCCCCCEEEEEecC-CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC--
Q 037120 158 LDAVRWNLANQDEVACASTR-SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG-- 234 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d-~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg-- 234 (489)
+...+|+|+++.++++...+ ...|.+||+..+.. ..+ ......+...+|+|+|+.++++.+.+|
T Consensus 201 ~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~---~~l----------~~~~g~~~~~~~SpDG~~la~~~~~~g~~ 267 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR---EQI----------TNFEGLNGAPAWSPDGSKLAFVLSKDGNP 267 (430)
T ss_pred eeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE---EEc----------cCCCCCcCCeEECCCCCEEEEEEccCCCc
Confidence 78899999997555554332 13688899843311 111 111123446899999993444555555
Q ss_pred cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CC--eEEEEEcCCCc
Q 037120 235 VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HG--SIYLWDLRGGR 289 (489)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg--~i~lwd~~~~~ 289 (489)
.|++||+.+++ .. .+..+........|+|+|+.++..+. +| .|+++|+.+++
T Consensus 268 ~Iy~~d~~~~~--~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 268 EIYVMDLASRQ--LS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred eEEEEECCCCC--eE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 58888998865 22 33344555667899999998877765 33 57777877665
No 245
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.07 E-value=2.6e-09 Score=96.52 Aligned_cols=167 Identities=14% Similarity=0.114 Sum_probs=110.0
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE-EecC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC-ASTR 177 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s-~~~d 177 (489)
+..+.+++++++||++..+....++++.......+ +.... .. ... -+++.|..+....+++ ...|
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~k--------l~~~~--~v-~~~---~~ai~~~~~~~sv~v~dkagD 130 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAK--------LLDVS--CV-PKR---PTAISFIREDTSVLVADKAGD 130 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcce--------eeeEe--ec-ccC---cceeeeeeccceEEEEeecCC
Confidence 55667889999999999999988888876222010 00000 00 001 2223443333333332 2222
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce-eeccCCC
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL-ELSTGSH 256 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~h~ 256 (489)
...+.+|.+..+. .. ...||-.-+++++|+||++ +|+++..|..|++-.....- .+ ....+|+
T Consensus 131 ~~~~di~s~~~~~---------~~----~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f--~IesfclGH~ 194 (390)
T KOG3914|consen 131 VYSFDILSADSGR---------CE----PILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATF--VIESFCLGHK 194 (390)
T ss_pred ceeeeeecccccC---------cc----hhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCccc--chhhhccccH
Confidence 2455555542111 11 1278999999999999999 99999999999987665432 22 2334899
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
..|..++.-++. .|+++|.|++|++||+++|+++.++..
T Consensus 195 eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 195 EFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred hheeeeeeccCc-eeeecCCCCcEEEEecccCCcccccch
Confidence 999999997655 489999999999999999999877654
No 246
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.07 E-value=1.2e-08 Score=102.62 Aligned_cols=196 Identities=16% Similarity=0.151 Sum_probs=130.3
Q ss_pred EEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 037120 161 VRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD 240 (489)
Q Consensus 161 v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd 240 (489)
..+..... .++.+..+ +.+.+||......-. ++....+.. + ....-+-++++.- ++++|+.-+.|.+|+
T Consensus 93 ~~l~~e~k-~i~l~~~~-ns~~i~d~~~~~~~~-~i~~~er~~---l----~~~~~~g~s~~~~-~i~~gsv~~~iivW~ 161 (967)
T KOG0974|consen 93 AKLFEENK-KIALVTSR-NSLLIRDSKNSSVLS-KIQSDERCT---L----YSSLIIGDSAEEL-YIASGSVFGEIIVWK 161 (967)
T ss_pred cchhhhcc-eEEEEEcC-ceEEEEecccCceeh-hcCCCceEE---E----EeEEEEeccCcEE-EEEeccccccEEEEe
Confidence 33444444 44444445 899999984321110 011111110 0 0111223344444 889999999999999
Q ss_pred CCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccc-eeecCCccCCCCeeEEEeCCCCcceee
Q 037120 241 RRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSA-PFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
....+.+ . ...+|++.|.++.++-+|.++++.+.|.++|+|++.+.+.+. +.-+|.
T Consensus 162 ~~~dn~p-~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs--------------------- 218 (967)
T KOG0974|consen 162 PHEDNKP-I-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS--------------------- 218 (967)
T ss_pred ccccCCc-c-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc---------------------
Confidence 9854433 3 466999999999999999999999999999999999866432 222222
Q ss_pred ccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEE
Q 037120 320 LKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYA 399 (489)
Q Consensus 320 ~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 399 (489)
..++.+.|. ...+
T Consensus 219 ---------aRvw~~~~~----------------------------------------------------------~n~i 231 (967)
T KOG0974|consen 219 ---------ARVWACCFL----------------------------------------------------------PNRI 231 (967)
T ss_pred ---------ceeEEEEec----------------------------------------------------------ccee
Confidence 222222221 1267
Q ss_pred EeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCC-CceEEEEeeCCCCeEEeccCcceeEEEecc
Q 037120 400 VGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLS-EGVTACVTHPLNNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 400 ~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~va~~p~~~~i~sgs~dg~i~v~~~~ 478 (489)
+++++|.+.++|+.... .+..+. +|. ..+..++.++....++|++.||.+.+|..+
T Consensus 232 ~t~gedctcrvW~~~~~-----------~l~~y~------------~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVNGT-----------QLEVYD------------EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred EEeccceEEEEEecccc-----------eehhhh------------hhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 88899999999977654 344555 564 569999999999999999999999998766
Q ss_pred cc
Q 037120 479 QQ 480 (489)
Q Consensus 479 ~~ 480 (489)
..
T Consensus 289 ~r 290 (967)
T KOG0974|consen 289 GR 290 (967)
T ss_pred cc
Confidence 54
No 247
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.07 E-value=8.6e-08 Score=98.23 Aligned_cols=273 Identities=14% Similarity=0.147 Sum_probs=148.0
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|..++.++....++++|+.| |+|++||.+...... .+.....++ ..-...+..+.+.+.+. .++.++.||.|+
T Consensus 1051 v~k~a~s~~~~s~FvsgS~D-GtVKvW~~~k~~~~~-~s~rS~lty----s~~~sr~~~vt~~~~~~-~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1051 VIKLAVSSEHTSLFVSGSDD-GTVKVWNLRKLEGEG-GSARSELTY----SPEGSRVEKVTMCGNGD-QFAVSTKDGSVR 1123 (1431)
T ss_pred ccceeecCCCCceEEEecCC-ceEEEeeehhhhcCc-ceeeeeEEE----eccCCceEEEEeccCCC-eEEEEcCCCeEE
Confidence 55688887776699999998 999999996543331 222333333 32346888999998888 899999999999
Q ss_pred EEECCCCC--cC---ceeeccCCC-Cc-eeEEEEeec-CC-EEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEE
Q 037120 238 IWDRRVGV--LP---SLELSTGSH-GT-LNSIQLHAE-NQ-IIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSL 308 (489)
Q Consensus 238 iwd~~~~~--~~---~~~~~~~h~-~~-v~~~~~~p~-~~-~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l 308 (489)
+.++...+ .. +.+....+. +. |..-+|... +. .++.+..-+.|..||+++...+..++.... ++.|+++
T Consensus 1124 ~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~--hG~vTSi 1201 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR--HGLVTSI 1201 (1431)
T ss_pred EEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc--ccceeEE
Confidence 99987621 11 222222222 22 333344332 33 566666688999999998665444432111 1225555
Q ss_pred EeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCc
Q 037120 309 KLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRK 388 (489)
Q Consensus 309 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (489)
+ .+|-+..++.++. .+|-.+||+.-+.... .|..... ...+.
T Consensus 1202 ~--------------------------idp~~~WlviGts-~G~l~lWDLRF~~~i~------sw~~P~~-----~~i~~ 1243 (1431)
T KOG1240|consen 1202 V--------------------------IDPWCNWLVIGTS-RGQLVLWDLRFRVPIL------SWEHPAR-----APIRH 1243 (1431)
T ss_pred E--------------------------ecCCceEEEEecC-CceEEEEEeecCceee------cccCccc-----CCcce
Confidence 4 4455544443332 3344455544332222 1211110 11122
Q ss_pred ceeecCC---cEEEEeec-CCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEE
Q 037120 389 PSWLSTN---SIYAVGSS-SDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIV 464 (489)
Q Consensus 389 ~~~~~~~---~~~l~sgs-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~ 464 (489)
+...|.. ...+.+|+ ..+.|-+|++.++......... .....++ ...+......++.-....+++.--+..+.
T Consensus 1244 v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s-~~~p~ls--~~~Ps~~~~kp~~~~~~~~~~~~~~~~~l 1320 (1431)
T KOG1240|consen 1244 VWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS-DGAPILS--YALPSNDARKPDSLAGISCGVCEKNGFLL 1320 (1431)
T ss_pred EEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC-CCCcchh--hhcccccCCCCCcccceeeecccCCceee
Confidence 2222221 33344444 6789999999988221111111 0111111 01111101114444555566666677999
Q ss_pred eccCcceeEEEecccc
Q 037120 465 AGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 465 sgs~dg~i~v~~~~~~ 480 (489)
+||.|+.|+.|..-..
T Consensus 1321 tggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1321 TGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred ecCCccceeeccCCCc
Confidence 9999999999865433
No 248
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=3.5e-09 Score=99.71 Aligned_cols=183 Identities=18% Similarity=0.201 Sum_probs=120.8
Q ss_pred CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEec
Q 037120 108 GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIG 187 (489)
Q Consensus 108 g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~ 187 (489)
..+++.|+ ...|.=++++.+..... +...... +.++..++-. ++|++|+.+ |.|..||.+
T Consensus 146 cDly~~gs-g~evYRlNLEqGrfL~P--------~~~~~~~---------lN~v~in~~h-gLla~Gt~~-g~VEfwDpR 205 (703)
T KOG2321|consen 146 CDLYLVGS-GSEVYRLNLEQGRFLNP--------FETDSGE---------LNVVSINEEH-GLLACGTED-GVVEFWDPR 205 (703)
T ss_pred ccEEEeec-CcceEEEEccccccccc--------ccccccc---------ceeeeecCcc-ceEEecccC-ceEEEecch
Confidence 34444444 44577778887655542 2222222 8889999986 488888888 999999997
Q ss_pred cCCCCCceeeeecee-eeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEee
Q 037120 188 YISDEPVEVLKTRRS-VTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHA 266 (489)
Q Consensus 188 ~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p 266 (489)
....- ..+..... ..+++......|+++.|..+|- .++.|..+|.|.|||+|+.+ |.+..-.+...+|..+.|.+
T Consensus 206 ~ksrv--~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~-pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 206 DKSRV--GTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASK-PLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred hhhhh--eeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCC-ceeecccCCccceeeecccc
Confidence 54321 22211111 1111222344599999998887 89999999999999999965 32212224456788999977
Q ss_pred cCC-EEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceee
Q 037120 267 ENQ-IIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 267 ~~~-~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
.+. ..++......++|||-.+|+....+.. .. .++.+++-|++.++..
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp-t~----~lND~C~~p~sGm~f~ 330 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMASIEP-TS----DLNDFCFVPGSGMFFT 330 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCceeeccc-cC----CcCceeeecCCceEEE
Confidence 632 234444567899999999998776664 22 2889999998877743
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.05 E-value=4.4e-07 Score=86.61 Aligned_cols=262 Identities=10% Similarity=0.104 Sum_probs=139.7
Q ss_pred eeEEEeeCCCCCEEEEEec---CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CC
Q 037120 158 LDAVRWNLANQDEVACAST---RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-TH 233 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~---d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~d 233 (489)
-..++++|++. +|.+... +.+.|..|++.... ..+...... .........++++|++. +|+++. .+
T Consensus 39 Ps~l~~~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~----g~L~~~~~~----~~~g~~p~~i~~~~~g~-~l~vany~~ 108 (345)
T PF10282_consen 39 PSWLAVSPDGR-RLYVVNEGSGDSGGVSSYRIDPDT----GTLTLLNSV----PSGGSSPCHIAVDPDGR-FLYVANYGG 108 (345)
T ss_dssp ECCEEE-TTSS-EEEEEETTSSTTTEEEEEEEETTT----TEEEEEEEE----EESSSCEEEEEECTTSS-EEEEEETTT
T ss_pred CceEEEEeCCC-EEEEEEccccCCCCEEEEEECCCc----ceeEEeeee----ccCCCCcEEEEEecCCC-EEEEEEccC
Confidence 34489999986 4444444 34899999994321 122222222 11223556789999999 665555 79
Q ss_pred CcEEEEECCCCCcC--ceeecc----------CCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcc-c---ceeec
Q 037120 234 GVVNIWDRRVGVLP--SLELST----------GSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRT-S---APFHN 296 (489)
Q Consensus 234 g~i~iwd~~~~~~~--~~~~~~----------~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~-~---~~~~~ 296 (489)
|.|.++++...... ...... .......++.|+|+++++++... ...|++|++..... + ..+..
T Consensus 109 g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~ 188 (345)
T PF10282_consen 109 GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV 188 (345)
T ss_dssp TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC
T ss_pred CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc
Confidence 99999999874221 111110 11244678999999999998865 56899999987542 2 22221
Q ss_pred CCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCC
Q 037120 297 HKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSD 376 (489)
Q Consensus 297 ~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 376 (489)
..+ ..-+.+.|+|+++++.-.. .....|..+.+.+.... +. .+ ..+...+..+...
T Consensus 189 ~~G---~GPRh~~f~pdg~~~Yv~~----e~s~~v~v~~~~~~~g~---------~~-~~-------~~~~~~~~~~~~~ 244 (345)
T PF10282_consen 189 PPG---SGPRHLAFSPDGKYAYVVN----ELSNTVSVFDYDPSDGS---------LT-EI-------QTISTLPEGFTGE 244 (345)
T ss_dssp STT---SSEEEEEE-TTSSEEEEEE----TTTTEEEEEEEETTTTE---------EE-EE-------EEEESCETTSCSS
T ss_pred ccC---CCCcEEEEcCCcCEEEEec----CCCCcEEEEeecccCCc---------ee-EE-------EEeeecccccccc
Confidence 111 1156777777776553211 11222233333211110 00 00 0011111111111
Q ss_pred CCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEe
Q 037120 377 SNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVT 456 (489)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~ 456 (489)
.....+..+|+|..+.++...++.|-+|++....... +.+..+. ........+++
T Consensus 245 -------~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l------~~~~~~~------------~~G~~Pr~~~~ 299 (345)
T PF10282_consen 245 -------NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL------TLVQTVP------------TGGKFPRHFAF 299 (345)
T ss_dssp -------SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE------EEEEEEE------------ESSSSEEEEEE
T ss_pred -------CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce------EEEEEEe------------CCCCCccEEEE
Confidence 0112356678888888888888999999994320000 1111111 12234789999
Q ss_pred eCCCCeEEecc-CcceeEEEecc
Q 037120 457 HPLNNTIVAGT-KNSSLLVVSQK 478 (489)
Q Consensus 457 ~p~~~~i~sgs-~dg~i~v~~~~ 478 (489)
+|++++|+++. .++.|.+|...
T Consensus 300 s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 300 SPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEE
T ss_pred eCCCCEEEEEecCCCeEEEEEEe
Confidence 99999777665 57788888654
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=2.4e-08 Score=98.70 Aligned_cols=160 Identities=11% Similarity=0.053 Sum_probs=100.7
Q ss_pred cCCCceeEEEECCCCcEEEEEecC---CeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRS---GCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~d---g~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.+...+...+|+|||+.||..+.+ ..|.+||+.++..... . ... .. +...+|+|++..+
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l---------~---~~~---g~---~~~~~~SpDG~~l 257 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI---------T---NFE---GL---NGAPAWSPDGSKL 257 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc---------c---CCC---CC---cCCeEECCCCCEE
Confidence 344558899999999999887653 3688899987433221 0 011 11 4458999999866
Q ss_pred EEEEecCCC--EEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCC--cEEEEECCCCC
Q 037120 171 VACASTRSN--VVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THG--VVNIWDRRVGV 245 (489)
Q Consensus 171 l~s~~~d~g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg--~i~iwd~~~~~ 245 (489)
+++...+ | .|.+||+..+.. .. +..+........|+|+++ .|+..+ .++ .|+++|+.+++
T Consensus 258 a~~~~~~-g~~~Iy~~d~~~~~~---~~----------lt~~~~~~~~~~~spDg~-~i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 258 AFVLSKD-GNPEIYVMDLASRQL---SR----------VTNHPAIDTEPFWGKDGR-TLYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred EEEEccC-CCceEEEEECCCCCe---EE----------cccCCCCcCCeEECCCCC-EEEEEECCCCCceEEEEECCCCC
Confidence 6666544 4 678888843210 11 122334556788999999 555444 443 57778887765
Q ss_pred cCceeeccCCCCceeEEEEeecCCEEEEEeC-CC--eEEEEEcCCCc
Q 037120 246 LPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HG--SIYLWDLRGGR 289 (489)
Q Consensus 246 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg--~i~lwd~~~~~ 289 (489)
...+ . ..........|+|+|+.++..+. ++ .|.+||+.+++
T Consensus 323 ~~~l--t-~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 323 AERV--T-FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred EEEe--e-cCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 2222 1 11223345789999999888765 33 58889988765
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=2.4e-08 Score=98.53 Aligned_cols=160 Identities=13% Similarity=0.072 Sum_probs=96.8
Q ss_pred CCCceeEEEECCCCcEEEEEec-CC--eEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 95 GKPGISALDFDCKGIYLVSATR-SG--CLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~-dg--~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
....+.+..|+|||+.|+..+. ++ .|.+||+.+++.... ....+ . ....+|+|+++.++
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l------------t~~~g---~---~~~~~wSPDG~~La 277 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV------------TSFPG---I---NGAPRFSPDGKKLA 277 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe------------cCCCC---C---cCCeeECCCCCEEE
Confidence 3345788999999999988765 33 578888876432210 00011 1 33589999998777
Q ss_pred EEEecCCCE--EEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC--cEEEEECCCCCcC
Q 037120 172 ACASTRSNV--VSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG--VVNIWDRRVGVLP 247 (489)
Q Consensus 172 ~s~~~d~g~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~ 247 (489)
++.+.+ |. |.++|+..+ .. .. +..+.......+|+|+++.++++...++ .|+++|+.+++..
T Consensus 278 ~~~~~~-g~~~Iy~~dl~tg--~~----~~-------lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 278 LVLSKD-GQPEIYVVDIATK--AL----TR-------ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred EEEeCC-CCeEEEEEECCCC--Ce----EE-------CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 766665 65 666676322 11 10 1223345677899999993444444444 4666787766522
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeC-CC--eEEEEEcCCCc
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGK-HG--SIYLWDLRGGR 289 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg--~i~lwd~~~~~ 289 (489)
.+ ..........+|+|+|++++..+. ++ .|.++|+.+++
T Consensus 344 ~L---t~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 344 RL---TFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA 385 (448)
T ss_pred EE---ecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence 22 112223345789999999888765 44 45667877664
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.01 E-value=2e-07 Score=91.93 Aligned_cols=140 Identities=14% Similarity=0.103 Sum_probs=86.3
Q ss_pred eeEEEeeCCCCCEEEEEecC-CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC--
Q 037120 158 LDAVRWNLANQDEVACASTR-SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG-- 234 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d-~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg-- 234 (489)
+.+.+|+|+++.++++...+ ...|.+||+..+.. ..+ ..+...+.+++|+|+++.++++.+.++
T Consensus 192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~---~~~----------~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 258 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR---EKV----------ASFPGMNGAPAFSPDGSKLAVSLSKDGNP 258 (417)
T ss_pred eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE---EEe----------ecCCCCccceEECCCCCEEEEEECCCCCc
Confidence 67789999998555544322 14799999843211 110 123335667899999984445555544
Q ss_pred cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CC--eEEEEEcCCCcccceeecCCccCCCCeeEEEeC
Q 037120 235 VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HG--SIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg--~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~ 311 (489)
.|++||+.++. .. .+..+........|+|+|+.|+.++. ++ .|+++|+.+++. ..+..+... +..+.|+
T Consensus 259 ~i~~~d~~~~~--~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~----~~~~~~s 330 (417)
T TIGR02800 259 DIYVMDLDGKQ--LT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGY----NASPSWS 330 (417)
T ss_pred cEEEEECCCCC--EE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCC----ccCeEEC
Confidence 58889998765 22 23334444557799999998887765 33 688888876553 233322323 5566677
Q ss_pred CCCccee
Q 037120 312 SMLEKIG 318 (489)
Q Consensus 312 ~~~~~i~ 318 (489)
|+|..+.
T Consensus 331 pdg~~i~ 337 (417)
T TIGR02800 331 PDGDLIA 337 (417)
T ss_pred CCCCEEE
Confidence 7766554
No 253
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.01 E-value=3.3e-07 Score=87.48 Aligned_cols=265 Identities=10% Similarity=0.059 Sum_probs=142.2
Q ss_pred ceeEEEECCCCcEEEEEec----CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 98 GISALDFDCKGIYLVSATR----SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~----dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
...-++++|++++|.+... +|.|..|++....- .+........ .+..-..++.+|++..++++
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g----------~L~~~~~~~~---~g~~p~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG----------TLTLLNSVPS---GGSSPCHIAVDPDGRFLYVA 104 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT----------EEEEEEEEEE---SSSCEEEEEECTTSSEEEEE
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc----------eeEEeeeecc---CCCCcEEEEEecCCCEEEEE
Confidence 4667889999999988877 57999998876310 0110000000 11225568999998755544
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeec------CCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCc
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVG------SDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWDRRVGVL 246 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~ 246 (489)
--. +|+|.++++.... ..........+.. ..-.....++.|+|+++ +++... ....|.+|++.....
T Consensus 105 ny~-~g~v~v~~l~~~g----~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~-~v~v~dlG~D~v~~~~~~~~~~ 178 (345)
T PF10282_consen 105 NYG-GGSVSVFPLDDDG----SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR-FVYVPDLGADRVYVYDIDDDTG 178 (345)
T ss_dssp ETT-TTEEEEEEECTTS----EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS-EEEEEETTTTEEEEEEE-TTS-
T ss_pred Ecc-CCeEEEEEccCCc----ccceeeeecccCCCCCcccccccccceeEEECCCCC-EEEEEecCCCEEEEEEEeCCCc
Confidence 434 4999999995431 1111111111000 11234567899999999 555554 556899999977542
Q ss_pred Cc---eeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcC--CCcc--cceeecCCccCCCCeeEEEeCCCCccee
Q 037120 247 PS---LELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLR--GGRT--SAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 247 ~~---~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~--~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
.. ..........-..++|+|+++++++... ++.|.+|++. ++.. +..+... |.+
T Consensus 179 ~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~--------------~~~---- 240 (345)
T PF10282_consen 179 KLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL--------------PEG---- 240 (345)
T ss_dssp TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC--------------ETT----
T ss_pred eEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec--------------ccc----
Confidence 11 1111234566789999999999999887 9999999998 3321 1111111 000
Q ss_pred eccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEe--eccceeeecCCCCCCcCCCCccccccCCCcceeecCCc
Q 037120 319 TLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDV--YNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNS 396 (489)
Q Consensus 319 ~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (489)
.........+.++|+++++++......-..++++ .++....+...+. .. ...|.+.+.|+|.
T Consensus 241 ------~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~---~G-------~~Pr~~~~s~~g~ 304 (345)
T PF10282_consen 241 ------FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT---GG-------KFPRHFAFSPDGR 304 (345)
T ss_dssp ------SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE---SS-------SSEEEEEE-TTSS
T ss_pred ------ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC---CC-------CCccEEEEeCCCC
Confidence 0000122344455555554444433332222222 1122221111100 00 1125567778888
Q ss_pred EEEEeecCCCcEEEEeccC
Q 037120 397 IYAVGSSSDHGIHLLDFFP 415 (489)
Q Consensus 397 ~~l~sgs~d~~i~vwd~~~ 415 (489)
.++++.-.++.|.+|++..
T Consensus 305 ~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 305 YLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEEEETTTTEEEEEEEET
T ss_pred EEEEEecCCCeEEEEEEeC
Confidence 8888888889999998853
No 254
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=3.8e-07 Score=86.02 Aligned_cols=305 Identities=10% Similarity=0.076 Sum_probs=176.1
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec--
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST-- 176 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~-- 176 (489)
-+-+.|||.|.||++--.-| |.+|--.+-..... -.|.. |.-+.|||... .|++-+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~R---------------F~Hp~----Vq~idfSP~Ek-YLVT~s~~p 271 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQR---------------FYHPG----VQFIDFSPNEK-YLVTYSPEP 271 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHh---------------ccCCC----ceeeecCCccc-eEEEecCCc
Confidence 45678999999999988776 88996665222221 11332 77799999876 4444321
Q ss_pred --------CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 177 --------RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 177 --------d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
+...++|||++++... ..+... .+....-.-..|+-|++ +++.-.. ..|.||+..+-. .
T Consensus 272 ~~~~~~d~e~~~l~IWDI~tG~lk--rsF~~~-------~~~~~~WP~frWS~DdK-y~Arm~~-~sisIyEtpsf~--l 338 (698)
T KOG2314|consen 272 IIVEEDDNEGQQLIIWDIATGLLK--RSFPVI-------KSPYLKWPIFRWSHDDK-YFARMTG-NSISIYETPSFM--L 338 (698)
T ss_pred cccCcccCCCceEEEEEccccchh--cceecc-------CCCccccceEEeccCCc-eeEEecc-ceEEEEecCcee--e
Confidence 1258999999665322 111111 11111223368999998 7776654 688999876532 2
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeC-----CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceee-cc-
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGK-----HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGT-LK- 321 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~-----dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~-~~- 321 (489)
+....-.-..|....|+|.+..|+-=.- --.+.|-.+.+++.+++-..+.-+ =..|.|...|.+++- ..
T Consensus 339 ld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVs----DckLhWQk~gdyLcvkvdR 414 (698)
T KOG2314|consen 339 LDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVS----DCKLHWQKSGDYLCVKVDR 414 (698)
T ss_pred ecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeee----ccEEEeccCCcEEEEEEEe
Confidence 2111112356888999999887665433 224667777776666665555422 345667777777721 00
Q ss_pred ------------------------ccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCC
Q 037120 322 ------------------------AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDS 377 (489)
Q Consensus 322 ------------------------~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (489)
.........|...++.|.|..+++.+.... ...+..|.... . ...+..-
T Consensus 415 ~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~-k~tvsfY~~e~-~----~~~~~lV- 487 (698)
T KOG2314|consen 415 HTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTV-KNTVSFYAVET-N----IKKPSLV- 487 (698)
T ss_pred eccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcccc-ccceeEEEeec-C----CCchhhh-
Confidence 001112455677888999988776665433 11111111110 0 0001000
Q ss_pred CccccccCCCcceeecCCcEEEEee--cCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEE
Q 037120 378 NNSADQLHLRKPSWLSTNSIYAVGS--SSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACV 455 (489)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~l~sg--s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va 455 (489)
..++...-..+.|+|.|+.+++++ |..|.+.++|.... .....-. +-.-.-+.+.
T Consensus 488 -k~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a----------~~k~~~~------------~eh~~at~ve 544 (698)
T KOG2314|consen 488 -KELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA----------DLKDTAS------------PEHFAATEVE 544 (698)
T ss_pred -hhhcccccceEEEcCCCcEEEEEEecccccceEEEecchh----------hhhhccC------------ccccccccce
Confidence 112223345688999988877764 56889999998753 1111111 1123457899
Q ss_pred eeCCCCeEEeccCcce
Q 037120 456 THPLNNTIVAGTKNSS 471 (489)
Q Consensus 456 ~~p~~~~i~sgs~dg~ 471 (489)
|.|.|.++++++.-+.
T Consensus 545 WDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 545 WDPTGRYVVTSSSSWR 560 (698)
T ss_pred ECCCCCEEEEeeehhh
Confidence 9999999999876443
No 255
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=3.8e-09 Score=99.03 Aligned_cols=181 Identities=14% Similarity=0.149 Sum_probs=120.5
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
|..|.+.|+.++--.+.+-+++++.|.+|++|.+...-... |+...+..++.|+.. |.++.|-.+.. .+
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~-------~tsaCQfTY~aHkk~---i~~igfL~~lr-~i 799 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI-------GTSACQFTYQAHKKP---IHDIGFLADLR-SI 799 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc-------ccceeeeEhhhccCc---ccceeeeeccc-ee
Confidence 66677788888776777889999999999999987632211 233334445667777 77799988753 33
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecC-CCcEEEE-EeCCCcEEEEECCCCCcCc-
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAV-NTSRLIA-SDTHGVVNIWDRRVGVLPS- 248 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s-~s~dg~i~iwd~~~~~~~~- 248 (489)
++ . ||-|++||.-.+ . .+..... ....+.+..+..-++ +..++++ |+...+|+++|.|..+..+
T Consensus 800 ~S-c--D~giHlWDPFig--r---~Laq~~d-----apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E 866 (1034)
T KOG4190|consen 800 AS-C--DGGIHLWDPFIG--R---LLAQMED-----APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCE 866 (1034)
T ss_pred ee-c--cCcceeeccccc--c---hhHhhhc-----CcccCCCceeEecccCcchheeeeccchhhheeeecccccceee
Confidence 33 3 389999997211 1 1110100 111123333444443 3324444 4788999999999987553
Q ss_pred eeec--cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 249 LELS--TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 249 ~~~~--~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
++.. .+.+..+.+++..+.|+.++++-+.|.|.+.|.|+|+.+..+..
T Consensus 867 ~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 867 LKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred EEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 2222 24456788999999999999999999999999999987665543
No 256
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.97 E-value=1.5e-08 Score=87.92 Aligned_cols=162 Identities=14% Similarity=0.121 Sum_probs=117.0
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
-.++.|++.|.-++++-.+|.+.+-+.... .++....++.|..+ +.-.+|+-..++++.+|++|
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~------------~le~vq~wk~He~E---~Wta~f~~~~pnlvytGgDD- 187 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEM------------VLEKVQTWKVHEFE---AWTAKFSDKEPNLVYTGGDD- 187 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEeccee------------eeeeccccccccee---eeeeecccCCCceEEecCCC-
Confidence 357889999999999999999985544431 23333346778777 55599988878899999988
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCc
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGT 258 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~ 258 (489)
+.+.-||++... ..+.... .-|+..|.+|.-+|..+..++||+.|-.|++||.|+-.+|.... .-.+.
T Consensus 188 ~~l~~~D~R~p~---~~i~~n~-------kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~--~v~GG 255 (339)
T KOG0280|consen 188 GSLSCWDIRIPK---TFIWHNS-------KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA--KVGGG 255 (339)
T ss_pred ceEEEEEecCCc---ceeeecc-------eeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC--ccccc
Confidence 999999996221 1222211 44888999999988777799999999999999999877664433 33589
Q ss_pred eeEEEEeecCC-EEEEEeCCCeEEEEEcCCC
Q 037120 259 LNSIQLHAENQ-IIFAAGKHGSIYLWDLRGG 288 (489)
Q Consensus 259 v~~~~~~p~~~-~l~~~~~dg~i~lwd~~~~ 288 (489)
|.-+.++|.-. .+++++--+-.+|-++...
T Consensus 256 VWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 256 VWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred eEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 99999999654 2333344444666666653
No 257
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=7.1e-07 Score=84.44 Aligned_cols=300 Identities=12% Similarity=0.102 Sum_probs=170.6
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE----EE
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA----CA 174 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~----s~ 174 (489)
++..+++++|+++|.+. +..++|++.......-. .-... +.++.|+|-+.++.. +.
T Consensus 37 ~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt----------------~~~~~---~~~L~fSP~g~yL~T~e~~~i 96 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLC----------------VELKK---TYDLLFSPKGNYLLTWEPWAI 96 (566)
T ss_pred ceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEE----------------eccce---eeeeeeccccccccccccccc
Confidence 66788999999888776 56899999887421110 00012 777999998753321 01
Q ss_pred ecC----CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 175 STR----SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 175 ~~d----~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
..+ .-.+++|++..... ...+. ...... +...|+.|.. +++--..+.+++||+...+.+ .
T Consensus 97 ~~~~~~~~pn~~v~~vet~~~--------~s~~q---~k~Q~~-W~~qfs~dEs--l~arlv~nev~f~~~~~f~~~-~- 160 (566)
T KOG2315|consen 97 YGPKNASNPNVLVYNVETGVQ--------RSQIQ---KKMQNG-WVPQFSIDES--LAARLVSNEVQFYDLGSFKTI-Q- 160 (566)
T ss_pred ccCCCCCCCceeeeeecccee--------hhhee---hhhhcC-cccccccchh--hhhhhhcceEEEEecCCccce-e-
Confidence 111 13577999843110 00010 111122 6788998876 343344678999999874422 1
Q ss_pred eccCCCCceeEEEEeecCC-EEEEE------eCCCeEEEEEcCCCcc-----cceeecCCccCCCCeeEEEeCCCCccee
Q 037120 251 LSTGSHGTLNSIQLHAENQ-IIFAA------GKHGSIYLWDLRGGRT-----SAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~-~l~~~------~~dg~i~lwd~~~~~~-----~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
-.-|...|+.+.++|.+. ..++. |.-+.|+||-..-... .++|-... --.+.|++-|..+.
T Consensus 161 -~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkad------kvqm~WN~~gt~LL 233 (566)
T KOG2315|consen 161 -HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKAD------KVQMKWNKLGTALL 233 (566)
T ss_pred -eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccc------eeEEEeccCCceEE
Confidence 224577899999999843 33332 3356799998773221 22222111 23456666664431
Q ss_pred e---------------------cccc------ceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCC
Q 037120 319 T---------------------LKAQ------SKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPP 371 (489)
Q Consensus 319 ~---------------------~~~~------~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 371 (489)
- +..+ ......+|+++.|+|+++.++++..-- -....+++....-++
T Consensus 234 vLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfM--PAkvtifnlr~~~v~---- 307 (566)
T KOG2315|consen 234 VLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFM--PAKVTIFNLRGKPVF---- 307 (566)
T ss_pred EEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecc--cceEEEEcCCCCEeE----
Confidence 0 0011 011256889999999987665442110 011122211111111
Q ss_pred CCcCCCCccccccCCCcceeecCCcEEEEeecCC--CcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCC
Q 037120 372 AWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSD--HGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSE 449 (489)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 449 (489)
.+.. -.+..+.|+|.|..++++|=.+ |.+-|||+.+. +.+..+. ..
T Consensus 308 df~e--------gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~----------K~i~~~~--------------a~ 355 (566)
T KOG2315|consen 308 DFPE--------GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR----------KLIAKFK--------------AA 355 (566)
T ss_pred eCCC--------CCccceEECCCCCEEEEeecCCCCCceEEEeccch----------hhccccc--------------cC
Confidence 1111 3456788888888877776443 79999999988 6666554 23
Q ss_pred ceEEEEeeCCCCeEEeccCc------ceeEEEeccc
Q 037120 450 GVTACVTHPLNNTIVAGTKN------SSLLVVSQKQ 479 (489)
Q Consensus 450 ~V~~va~~p~~~~i~sgs~d------g~i~v~~~~~ 479 (489)
.-+-++|+|+|.+|+|++.. ..+.||---.
T Consensus 356 ~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 356 NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 35678999999999888764 4555564333
No 258
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.95 E-value=3.1e-06 Score=89.87 Aligned_cols=201 Identities=13% Similarity=0.147 Sum_probs=116.7
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..|.++.|-++..-|+.+..+|.|.+...+.. ....+.+..|.... +|.+++||||.+ +|+....
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~------------~~~~~~E~VG~vd~--GI~a~~WSPD~E-lla~vT~ 140 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPD------------PDEDEIEIVGSVDS--GILAASWSPDEE-LLALVTG 140 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCC------------CCCceeEEEEEEcC--cEEEEEECCCcC-EEEEEeC
Confidence 45999999999999999999999999933220 01112222333222 299999999987 5554444
Q ss_pred CCCEEEEEEeccC-------------CCCCc--------eeee-----e----ceeee------eecCCcccCeeEEEEe
Q 037120 177 RSNVVSIYDIGYI-------------SDEPV--------EVLK-----T----RRSVT------VVGSDVQKGLSDLAFS 220 (489)
Q Consensus 177 d~g~i~vwd~~~~-------------~~~~~--------~~~~-----~----~~~~~------~~~~~h~~~v~~~~~~ 220 (489)
+ +++.+.+-... ..++. ..++ . .+... ..+. +.+.-..|+|-
T Consensus 141 ~-~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWR 218 (928)
T PF04762_consen 141 E-GNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWR 218 (928)
T ss_pred C-CEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEEC
Confidence 4 77776643210 00000 0000 0 00000 0112 44566789999
Q ss_pred cCCCcEEEEEeC---C---CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC---CCeEEEEEcCCCccc
Q 037120 221 AVNTSRLIASDT---H---GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK---HGSIYLWDLRGGRTS 291 (489)
Q Consensus 221 ~~~~~~l~s~s~---d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~---dg~i~lwd~~~~~~~ 291 (489)
.||. +|+..+. + ..++||+-+ |. .......-.+--.+++|-|.|+++++.-. ...|.+|.- +|-.-
T Consensus 219 GDG~-yFAVss~~~~~~~~R~iRVy~Re-G~--L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrh 293 (928)
T PF04762_consen 219 GDGE-YFAVSSVEPETGSRRVIRVYSRE-GE--LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRH 293 (928)
T ss_pred CCCc-EEEEEEEEcCCCceeEEEEECCC-ce--EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEe
Confidence 9999 8887773 2 579999865 44 11111111222347899999998888754 456777774 44332
Q ss_pred ceeecCCccCCCCeeEEEeCCCCcceee
Q 037120 292 APFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 292 ~~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
..|.-........|..+.|++|+..++-
T Consensus 294 geF~l~~~~~~~~v~~l~Wn~ds~iLAv 321 (928)
T PF04762_consen 294 GEFTLRFDPEEEKVIELAWNSDSEILAV 321 (928)
T ss_pred eeEecCCCCCCceeeEEEECCCCCEEEE
Confidence 2232211000133999999999988853
No 259
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.94 E-value=7.9e-08 Score=91.30 Aligned_cols=146 Identities=14% Similarity=0.148 Sum_probs=107.9
Q ss_pred CcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCC
Q 037120 224 TSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHL 303 (489)
Q Consensus 224 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~ 303 (489)
..+++-|...|.|.+|++..++.........|.+.|+++.++.+-..+.+++.|+.+..|+....+.+..++.....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~--- 146 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL--- 146 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc---
Confidence 34788888999999999998873322122489999999999999999999999999999999987766666654433
Q ss_pred CeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccc
Q 037120 304 PLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQ 383 (489)
Q Consensus 304 ~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (489)
+.+++.+||
T Consensus 147 -~~sl~is~D---------------------------------------------------------------------- 155 (541)
T KOG4547|consen 147 -VSSLCISPD---------------------------------------------------------------------- 155 (541)
T ss_pred -cceEEEcCC----------------------------------------------------------------------
Confidence 333333332
Q ss_pred cCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCC----
Q 037120 384 LHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPL---- 459 (489)
Q Consensus 384 ~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~---- 459 (489)
+..++++ -+.|++||+.++ +.+..+. ||.++|.+++|--.
T Consensus 156 ------------~~~l~~a--s~~ik~~~~~~k----------evv~~ft------------gh~s~v~t~~f~~~~~g~ 199 (541)
T KOG4547|consen 156 ------------GKILLTA--SRQIKVLDIETK----------EVVITFT------------GHGSPVRTLSFTTLIDGI 199 (541)
T ss_pred ------------CCEEEec--cceEEEEEccCc----------eEEEEec------------CCCcceEEEEEEEecccc
Confidence 2223332 358999999999 9998888 99999999999877
Q ss_pred -CC-eEEeccCcceeEEEeccc
Q 037120 460 -NN-TIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 460 -~~-~i~sgs~dg~i~v~~~~~ 479 (489)
|. ++.+...+..+.+|-.++
T Consensus 200 ~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 200 IGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccceeeeccccccceeEEEEEc
Confidence 44 445555666677764444
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=6.7e-07 Score=87.60 Aligned_cols=143 Identities=9% Similarity=0.061 Sum_probs=75.7
Q ss_pred eeEEEeeCCCCCEE--EEEecC-CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CC
Q 037120 158 LDAVRWNLANQDEV--ACASTR-SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-TH 233 (489)
Q Consensus 158 V~~v~~~~~~~~~l--~s~~~d-~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~d 233 (489)
+.+-+|+|++..+. +....+ ...|.+.++..+ +. ..+.. +.+ .....+|+|||+ .|+..+ .+
T Consensus 187 ~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g--~~-~~lt~-------~~g---~~~~p~wSPDG~-~Laf~s~~~ 252 (428)
T PRK01029 187 SITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP--AG-KKILA-------LQG---NQLMPTFSPRKK-LLAFISDRY 252 (428)
T ss_pred cccceEccCCCceEEEEEEccCCCceEEEEECCCC--Cc-eEeec-------CCC---CccceEECCCCC-EEEEEECCC
Confidence 45579999987532 233322 135666677433 21 11111 122 344579999999 555443 33
Q ss_pred C----cEEEEECCCCCc-CceeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEE--EcCC-CcccceeecCCccCCCC
Q 037120 234 G----VVNIWDRRVGVL-PSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLW--DLRG-GRTSAPFHNHKEVCHLP 304 (489)
Q Consensus 234 g----~i~iwd~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lw--d~~~-~~~~~~~~~~~~~~~~~ 304 (489)
| .+.+||+..+.. ...+....+.......+|+|||+.|+..+. +|...|| ++.. +.....+..+...
T Consensus 253 g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~---- 328 (428)
T PRK01029 253 GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRN---- 328 (428)
T ss_pred CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCC----
Confidence 3 345577765321 122222222234467899999998887764 6655555 4432 2223333332223
Q ss_pred eeEEEeCCCCccee
Q 037120 305 LTSLKLASMLEKIG 318 (489)
Q Consensus 305 v~~l~~~~~~~~i~ 318 (489)
+....|+|||+.++
T Consensus 329 ~~~p~wSPDG~~La 342 (428)
T PRK01029 329 SSCPAWSPDGKKIA 342 (428)
T ss_pred ccceeECCCCCEEE
Confidence 55666777776554
No 261
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.93 E-value=1e-05 Score=72.95 Aligned_cols=295 Identities=9% Similarity=0.111 Sum_probs=154.4
Q ss_pred CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec-CCCEEEEEEeccCCCCCce
Q 037120 117 SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST-RSNVVSIYDIGYISDEPVE 195 (489)
Q Consensus 117 dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~-d~g~i~vwd~~~~~~~~~~ 195 (489)
+.-|++|++++..-... ......+... .+-|+|+|+...+.+.... +.|.|-.|.+....+.
T Consensus 15 s~gI~v~~ld~~~g~l~-----------~~~~v~~~~n---ptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~--- 77 (346)
T COG2706 15 SQGIYVFNLDTKTGELS-----------LLQLVAELGN---PTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGR--- 77 (346)
T ss_pred CCceEEEEEeCcccccc-----------hhhhccccCC---CceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCe---
Confidence 56799999985222111 0111223334 5569999998644444443 1488888888432222
Q ss_pred eeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEECCCC-CcCceeeccCCCCc----------eeEEE
Q 037120 196 VLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWDRRVG-VLPSLELSTGSHGT----------LNSIQ 263 (489)
Q Consensus 196 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~-~~~~~~~~~~h~~~----------v~~~~ 263 (489)
+........ .++ +-+.++++++++ +++++. .-|.|.++-++.. ..........|.+. +.+..
T Consensus 78 -Lt~ln~~~~--~g~--~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~ 151 (346)
T COG2706 78 -LTFLNRQTL--PGS--PPCYVSVDEDGR-FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN 151 (346)
T ss_pred -EEEeecccc--CCC--CCeEEEECCCCC-EEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceee
Confidence 111111111 222 237899999999 666666 6789999998763 22111112244444 78899
Q ss_pred EeecCCEEEEEeC-CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCe
Q 037120 264 LHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSY 342 (489)
Q Consensus 264 ~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~ 342 (489)
+.|++++|++..- -..|.+|++..|+....-...- ....--+.|.|+|++++..-.. +....|.-..+++....
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~----EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVN----ELNSTVDVLEYNPAVGK 226 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEe----ccCCEEEEEEEcCCCce
Confidence 9999999999865 4479999999776511111000 0001256777777776543211 11222222333222100
Q ss_pred EEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCee
Q 037120 343 QLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSH 422 (489)
Q Consensus 343 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~ 422 (489)
+ .....+.+.|..|...+.... +.-+++|..+.++--....|-++.+....
T Consensus 227 ~-----------------~~lQ~i~tlP~dF~g~~~~aa-------Ihis~dGrFLYasNRg~dsI~~f~V~~~~----- 277 (346)
T COG2706 227 F-----------------EELQTIDTLPEDFTGTNWAAA-------IHISPDGRFLYASNRGHDSIAVFSVDPDG----- 277 (346)
T ss_pred E-----------------EEeeeeccCccccCCCCceeE-------EEECCCCCEEEEecCCCCeEEEEEEcCCC-----
Confidence 0 011222333334433321111 12234444444443344477777775441
Q ss_pred eccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCc-ceeEEEeccccc
Q 037120 423 VDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKN-SSLLVVSQKQQC 481 (489)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~d-g~i~v~~~~~~~ 481 (489)
..+..+. ..+ .+...-....+.|.+++|++++++ ..|.||...+++
T Consensus 278 ----g~L~~~~---~~~------teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 278 ----GKLELVG---ITP------TEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred ----CEEEEEE---Eec------cCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 1111111 000 233335778999999988888765 457778777665
No 262
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=1.3e-07 Score=91.70 Aligned_cols=171 Identities=13% Similarity=0.116 Sum_probs=117.5
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCC-CCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGT-LPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~-~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
-...|++|+....++|+|+.||.++|..+.+........ -..+..+.-...+.||... |.-+.|+...+ .|.++.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~s---V~vvTWNe~~Q-KLTtSD 90 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNAS---VMVVTWNENNQ-KLTTSD 90 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcce---EEEEEeccccc-cccccC
Confidence 347899999999999999999999999887743322110 0000122223334678877 88899998875 666666
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce-eeccC
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL-ELSTG 254 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~ 254 (489)
.+ |.|.||-+-.++.- +.+.. ......|.+++|+.+|. .++..-.||.|.+=.+.... .+ +.++
T Consensus 91 t~-GlIiVWmlykgsW~--EEMiN--------nRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNR--IwgKeLk- 155 (1189)
T KOG2041|consen 91 TS-GLIIVWMLYKGSWC--EEMIN--------NRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNR--IWGKELK- 155 (1189)
T ss_pred CC-ceEEEEeeecccHH--HHHhh--------CcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccce--ecchhcc-
Confidence 66 99999998433211 11100 22445899999999999 89999999998776555322 11 1111
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
......+.|++|.+.++.+-..|.+.+||...
T Consensus 156 -g~~l~hv~ws~D~~~~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 156 -GQLLAHVLWSEDLEQALFKKANGETHLYDNQG 187 (1189)
T ss_pred -hheccceeecccHHHHHhhhcCCcEEEecccc
Confidence 11234688999999988888899999999765
No 263
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.89 E-value=5.7e-06 Score=76.89 Aligned_cols=172 Identities=14% Similarity=0.104 Sum_probs=116.2
Q ss_pred CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEe
Q 037120 107 KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDI 186 (489)
Q Consensus 107 ~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~ 186 (489)
+|+++|..+. |...|.+......++ .+|... |.-..+.-+++ -++.|..|.-.+-|+|.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq----------------v~~~~~---VrY~r~~~~~e-~~vigt~dgD~l~iyd~ 389 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ----------------VGKKGG---VRYRRIQVDPE-GDVIGTNDGDKLGIYDK 389 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE----------------cCCCCc---eEEEEEccCCc-ceEEeccCCceEEEEec
Confidence 3888888875 556666655533322 333333 77788877776 56667666239999999
Q ss_pred ccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEee
Q 037120 187 GYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHA 266 (489)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p 266 (489)
..+.. +.. .+.-+.|.++..+++|+ .++.+.....+.+.|+.++....+ -....+-|+.++|+|
T Consensus 390 ~~~e~---------kr~----e~~lg~I~av~vs~dGK-~~vvaNdr~el~vididngnv~~i--dkS~~~lItdf~~~~ 453 (668)
T COG4946 390 DGGEV---------KRI----EKDLGNIEAVKVSPDGK-KVVVANDRFELWVIDIDNGNVRLI--DKSEYGLITDFDWHP 453 (668)
T ss_pred CCceE---------EEe----eCCccceEEEEEcCCCc-EEEEEcCceEEEEEEecCCCeeEe--cccccceeEEEEEcC
Confidence 43311 111 33445899999999999 888888888999999999873332 234467899999999
Q ss_pred cCCEEEEEeCC----CeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeec
Q 037120 267 ENQIIFAAGKH----GSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTL 320 (489)
Q Consensus 267 ~~~~l~~~~~d----g~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~ 320 (489)
+++.++-+--+ ..|+++|+.+++... ....... =.+-+|.||++++.-+
T Consensus 454 nsr~iAYafP~gy~tq~Iklydm~~~Kiy~-vTT~ta~----DfsPaFD~d~ryLYfL 506 (668)
T COG4946 454 NSRWIAYAFPEGYYTQSIKLYDMDGGKIYD-VTTPTAY----DFSPAFDPDGRYLYFL 506 (668)
T ss_pred CceeEEEecCcceeeeeEEEEecCCCeEEE-ecCCccc----ccCcccCCCCcEEEEE
Confidence 99998887444 469999999877522 2211111 2345788888887543
No 264
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.88 E-value=4.1e-07 Score=80.90 Aligned_cols=178 Identities=11% Similarity=0.160 Sum_probs=113.1
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCC-cccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFES-LYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~-~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
+...|++...-|...-+.+.+.|.+++||--.. ++ .-+ ..+.....+++++.+++... .|++
T Consensus 23 ~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q------------~wp----sI~~~mP~~~~~~~y~~e~~-~L~v 85 (404)
T KOG1409|consen 23 SQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ------------YWP----SIYHYMPSPCSAMEYVSESR-RLYV 85 (404)
T ss_pred chhhhhhheeccCCCCeEEccccceeeeEEeccccc------------cCc----hhhhhCCCCceEeeeeccce-EEEE
Confidence 344466666667777799999999999995433 11 111 12222223388999998864 7888
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEEC------------
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDR------------ 241 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~------------ 241 (489)
|-.+ |++.-+.+...-.+ +...+.+ ..|...|..+-|+-... .+++.+.|..+.---.
T Consensus 86 g~~n-gtvtefs~sedfnk----m~~~r~~----~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~ 155 (404)
T KOG1409|consen 86 GQDN-GTVTEFALSEDFNK----MTFLKDY----LAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFE 155 (404)
T ss_pred EEec-ceEEEEEhhhhhhh----cchhhhh----hhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEee
Confidence 8877 99998887432111 1112222 55777777777776555 6666665544421111
Q ss_pred ---------------------------CCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cce
Q 037120 242 ---------------------------RVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAP 293 (489)
Q Consensus 242 ---------------------------~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~ 293 (489)
.......+..+.+|.+.+.+++|.|....+++|..|..|-+||+-..+- ...
T Consensus 156 ~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~e 235 (404)
T KOG1409|consen 156 TPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYE 235 (404)
T ss_pred ccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeee
Confidence 1111123445668999999999999999999999999999999976443 334
Q ss_pred eecCCc
Q 037120 294 FHNHKE 299 (489)
Q Consensus 294 ~~~~~~ 299 (489)
+.+|.+
T Consensus 236 l~gh~~ 241 (404)
T KOG1409|consen 236 LQGHND 241 (404)
T ss_pred eccchh
Confidence 444443
No 265
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=1.2e-08 Score=90.38 Aligned_cols=129 Identities=16% Similarity=0.207 Sum_probs=96.2
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec-CCCcEEEEEeCCCcE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA-VNTSRLIASDTHGVV 236 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~s~dg~i 236 (489)
|.++.|...+ +++..|..+ |.|..+|++........ .... .-|...|+++..-. +++ .|++.+.+|.|
T Consensus 255 VfAlQf~~s~-nLv~~GcRn-geI~~iDLR~rnqG~~~--~a~r------lyh~Ssvtslq~Lq~s~q-~LmaS~M~gki 323 (425)
T KOG2695|consen 255 VFALQFAGSD-NLVFNGCRN-GEIFVIDLRCRNQGNGW--CAQR------LYHDSSVTSLQILQFSQQ-KLMASDMTGKI 323 (425)
T ss_pred HHHHHhcccC-CeeEecccC-CcEEEEEeeecccCCCc--ceEE------EEcCcchhhhhhhccccc-eEeeccCcCce
Confidence 8889998765 488999988 99999999865332111 1111 23888999998776 566 88999999999
Q ss_pred EEEECCCCCcC-ceeeccCCCCceeE--EEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecC
Q 037120 237 NIWDRRVGVLP-SLELSTGSHGTLNS--IQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNH 297 (489)
Q Consensus 237 ~iwd~~~~~~~-~~~~~~~h~~~v~~--~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 297 (489)
++||+|..+.. -++...+|...-.- +-.++....++++|.|-..|||.++.|..+.+++..
T Consensus 324 kLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 324 KLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred eEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 99999986611 26667777544332 334567778999999999999999999888777643
No 266
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.84 E-value=1.3e-06 Score=76.32 Aligned_cols=181 Identities=12% Similarity=0.155 Sum_probs=111.7
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCC-----CCEEEE
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLAN-----QDEVAC 173 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~-----~~~l~s 173 (489)
=+-++||||+.+||.+...|+|+|||+......... +.....+ .-...|..+.|-+.. ...|+.
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~---------p~~~~~~--d~~~Aiagl~Fl~~~~s~~ws~ELlv 114 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP---------PAMSFPG--DLSDAIAGLIFLEYKKSAQWSYELLV 114 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC---------cccccCC--ccccceeeeEeeccccccccceeEEE
Confidence 567899999999999999999999999864333211 1111111 111226667775432 224445
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeec-CCcccCeeEEEEecCCCcEEEEEe-CCC----------cEEEEEC
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVG-SDVQKGLSDLAFSAVNTSRLIASD-THG----------VVNIWDR 241 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~s-~dg----------~i~iwd~ 241 (489)
-..+ |.++=|-+..+.... ......+ .+ ..+...|+++.++|..+ +|+.|+ ... -+..|-+
T Consensus 115 i~Y~-G~L~Sy~vs~gt~q~---y~e~hsf--sf~~~yp~Gi~~~vy~p~h~-LLlVgG~~~~~~~~s~a~~~GLtaWRi 187 (282)
T PF15492_consen 115 INYR-GQLRSYLVSVGTNQG---YQENHSF--SFSSHYPHGINSAVYHPKHR-LLLVGGCEQNQDGMSKASSCGLTAWRI 187 (282)
T ss_pred Eecc-ceeeeEEEEcccCCc---ceeeEEE--EecccCCCceeEEEEcCCCC-EEEEeccCCCCCccccccccCceEEEE
Confidence 5455 888888873322111 1111111 11 33477999999999998 665555 221 2455543
Q ss_pred CCCCc------------------C-cee-----ec---cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCccccee
Q 037120 242 RVGVL------------------P-SLE-----LS---TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPF 294 (489)
Q Consensus 242 ~~~~~------------------~-~~~-----~~---~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~ 294 (489)
-.+.. . ..+ .+ ......|..|.++|||..|++...+|.|.+|++.+.+....+
T Consensus 188 L~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 188 LSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred cCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 22110 0 000 11 123567899999999999999999999999999998876666
Q ss_pred ecC
Q 037120 295 HNH 297 (489)
Q Consensus 295 ~~~ 297 (489)
..+
T Consensus 268 ~~~ 270 (282)
T PF15492_consen 268 KQD 270 (282)
T ss_pred chh
Confidence 543
No 267
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.83 E-value=3e-07 Score=90.08 Aligned_cols=182 Identities=12% Similarity=0.028 Sum_probs=104.5
Q ss_pred eeEEEECCCCcEEEEEec-CC----eEEEEeCCCcccccCCCCCCCCCcccccccc-cCCCCCCceeEEEeeCCCCCEEE
Q 037120 99 ISALDFDCKGIYLVSATR-SG----CLTVHDFESLYYQCNGTLPGVGLKEDQSKHL-LHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~-dg----~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~-~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
....+|||||+.||..+. +| .+.+|++...... ... ... .+... ....+|+|++..+++
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g---------~~~---~lt~~~~~~---~~~p~wSPDG~~Laf 297 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIG---------KPR---RLLNEAFGT---QGNPSFSPDGTRLVF 297 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCC---------cce---EeecCCCCC---cCCeEECCCCCEEEE
Confidence 456789999998887653 23 3344665542100 000 001 01111 345899999986666
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC-C--CcEEEEECCCCCcCce
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT-H--GVVNIWDRRVGVLPSL 249 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~-d--g~i~iwd~~~~~~~~~ 249 (489)
+...+ |...||.+...... .. ... +..+...+....|+|||+ .|+..+. + ..|.+||+.+++. .
T Consensus 298 ~s~~~-g~~~ly~~~~~~~g--~~---~~~----lt~~~~~~~~p~wSPDG~-~Laf~~~~~g~~~I~v~dl~~g~~--~ 364 (428)
T PRK01029 298 VSNKD-GRPRIYIMQIDPEG--QS---PRL----LTKKYRNSSCPAWSPDGK-KIAFCSVIKGVRQICVYDLATGRD--Y 364 (428)
T ss_pred EECCC-CCceEEEEECcccc--cc---eEE----eccCCCCccceeECCCCC-EEEEEEcCCCCcEEEEEECCCCCe--E
Confidence 55545 76666655321101 00 010 122334567889999999 6665543 2 4699999988763 2
Q ss_pred eeccCCCCceeEEEEeecCCEEEEEeC---CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCC
Q 037120 250 ELSTGSHGTLNSIQLHAENQIIFAAGK---HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASML 314 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~l~~~~~---dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 314 (489)
.+......+....|+|+|+.|+..+. ...|+++|+.+++.. .+....+. +...+|+|-.
T Consensus 365 -~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~-~Lt~~~g~----~~~p~Ws~~~ 426 (428)
T PRK01029 365 -QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR-KIVIGSGE----KRFPSWGAFP 426 (428)
T ss_pred -EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCc----ccCceecCCC
Confidence 22222345678999999998876543 467999999876642 22222333 5566777643
No 268
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=1.1e-07 Score=92.05 Aligned_cols=151 Identities=16% Similarity=0.281 Sum_probs=110.1
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCce-eee--eceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVE-VLK--TRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG 234 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~-~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg 234 (489)
..|++|+... +.+++|+.| |.++|-.+.+....... -+. ..-....++.||+..|.-+.|+.+.+ .|-|+..+|
T Consensus 17 L~c~~WNke~-gyIAcgG~d-GlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtSDt~G 93 (1189)
T KOG2041|consen 17 LHCAEWNKES-GYIACGGAD-GLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTSDTSG 93 (1189)
T ss_pred EEEEEEcccC-CeEEecccc-ceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-cccccCCCc
Confidence 7889999875 588999988 99999998643211100 010 11123445799999999999999888 899999999
Q ss_pred cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCC
Q 037120 235 VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~ 313 (489)
.|.+|-+-.+++..-.+.....+.|.+++|+.+|..+...-.||.|.+=.+...+. -+.+++.. ...+.|++|
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~------l~hv~ws~D 167 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQL------LAHVLWSED 167 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhe------ccceeeccc
Confidence 99999998876542222234467889999999999999998899988776665433 33444422 678889998
Q ss_pred Ccce
Q 037120 314 LEKI 317 (489)
Q Consensus 314 ~~~i 317 (489)
.+.+
T Consensus 168 ~~~~ 171 (1189)
T KOG2041|consen 168 LEQA 171 (1189)
T ss_pred HHHH
Confidence 8655
No 269
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.81 E-value=7.1e-07 Score=79.40 Aligned_cols=287 Identities=13% Similarity=0.203 Sum_probs=154.1
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeec------eeeeeecCCcccCeeEEEEecCCC-cEEEEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTR------RSVTVVGSDVQKGLSDLAFSAVNT-SRLIAS 230 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~ 230 (489)
|.+|.|+..|. .|++|..+ |.|.++.-.......-...... ..+... ..-...|+.+.|.++++ ..|+..
T Consensus 28 is~vef~~~Ge-~LatGdkg-GRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkS-leieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 28 ISAVEFDHYGE-RLATGDKG-GRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKS-LEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred eeeEEeecccc-eEeecCCC-CeEEEeecccccccceeeeeeeeccCcccchhhh-hhhhhhhhhceecCCCCccEEEEe
Confidence 89999999986 88999888 9999987633221100000000 000000 11245789999998876 467788
Q ss_pred eCCCcEEEEECCCCCcCc---------------------------------eeec-cCCCCceeEEEEeecCCEEEEEeC
Q 037120 231 DTHGVVNIWDRRVGVLPS---------------------------------LELS-TGSHGTLNSIQLHAENQIIFAAGK 276 (489)
Q Consensus 231 s~dg~i~iwd~~~~~~~~---------------------------------~~~~-~~h~~~v~~~~~~p~~~~l~~~~~ 276 (489)
+.|.+|++|-++...... .+.+ .+|.--|+++.++.|+..++++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 889999999876432110 1111 2677789999999999987765 5
Q ss_pred CCeEEEEEcCCCcc---cceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCce
Q 037120 277 HGSIYLWDLRGGRT---SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWS 353 (489)
Q Consensus 277 dg~i~lwd~~~~~~---~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~ 353 (489)
|=.|.+|++.-... +..++.+. ......-|++..|+|....+++++...+-.
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~n-------------------------mEeLteVITsaEFhp~~cn~f~YSSSKGtI 238 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPAN-------------------------MEELTEVITSAEFHPHHCNVFVYSSSKGTI 238 (433)
T ss_pred ceeeeeccccccCCceeEEEccccC-------------------------HHHHHHHHhhhccCHhHccEEEEecCCCcE
Confidence 77899999875332 11111111 001111234444555555555555444433
Q ss_pred EEEEeeccceeeecCCCCCCcCCCCc------cccccCCCcceeecCCcEEEEeecCC-CcEEEEeccCCCCCCeeeccC
Q 037120 354 GVLDVYNSRVSHVHCPPPAWLSDSNN------SADQLHLRKPSWLSTNSIYAVGSSSD-HGIHLLDFFPGSSSPSHVDYN 426 (489)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~sgs~d-~~i~vwd~~~~~~~~~~~~~~ 426 (489)
++.++.....-..++. .|.....+ +.-...+..+-|+.. |+|+++ .| -+|+|||+.-. ..++.
T Consensus 239 rLcDmR~~aLCd~hsK--lfEepedp~~rsffseiIsSISDvKFs~s-Gryils--RDyltvk~wD~nme-~~pv~---- 308 (433)
T KOG1354|consen 239 RLCDMRQSALCDAHSK--LFEEPEDPSSRSFFSEIISSISDVKFSHS-GRYILS--RDYLTVKLWDLNME-AKPVE---- 308 (433)
T ss_pred EEeechhhhhhcchhh--hhccccCCcchhhHHHHhhhhhceEEccC-CcEEEE--eccceeEEEecccc-CCcce----
Confidence 4444442111111110 11111000 000011122333333 677777 55 59999999543 11110
Q ss_pred cccchhh-HhhhhcccCCcccCCCce---EEEEeeCCCCeEEeccCcceeEEEecccccccccccc
Q 037120 427 EDIESLS-ERTKLKKENRFVPLSEGV---TACVTHPLNNTIVAGTKNSSLLVVSQKQQCTSDSMLE 488 (489)
Q Consensus 427 ~~~~~~~-~~~~~~~~~~~~~h~~~V---~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~~~~~~~ 488 (489)
..+... .+.+.-. +--.+.| ..++|+-++..++|||.+....||...+.+.++..++
T Consensus 309 -t~~vh~~lr~kLc~----lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~ 369 (433)
T KOG1354|consen 309 -TYPVHEYLRSKLCS----LYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLE 369 (433)
T ss_pred -EEeehHhHHHHHHH----HhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeeccc
Confidence 000000 0000000 0012222 5689998999999999999999998777776665543
No 270
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.6e-07 Score=83.78 Aligned_cols=80 Identities=19% Similarity=0.217 Sum_probs=67.8
Q ss_pred CCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcC
Q 037120 208 SDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLR 286 (489)
Q Consensus 208 ~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~ 286 (489)
.+|...|.+++|+|....++..++.+..|+|.|+++.. ++..+..+ ..+.+++|+-+..+.+-+|. .|.|.+||+|
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--VVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccce--eeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 66778999999999888788999999999999999866 56556566 78999999998877666666 9999999999
Q ss_pred CCcc
Q 037120 287 GGRT 290 (489)
Q Consensus 287 ~~~~ 290 (489)
..+.
T Consensus 267 ~~~~ 270 (463)
T KOG1645|consen 267 QPEG 270 (463)
T ss_pred CCCc
Confidence 8654
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.79 E-value=7.5e-06 Score=88.66 Aligned_cols=182 Identities=16% Similarity=0.159 Sum_probs=100.8
Q ss_pred eEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 100 SALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 100 ~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
..+++++. |.++++-+.++.|++||...............|...+.. -..+... -..+++++++..++++-..+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~-~~a~f~~---P~GIavd~~gn~LYVaDt~n- 645 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSF-EDATFNR---PQGLAYNAKKNLLYVADTEN- 645 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCch-hccccCC---CcEEEEeCCCCEEEEEeCCC-
Confidence 36788875 667777788899999998764322111000000000000 0012222 34499998875455555545
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCc-------ccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee-
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDV-------QKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE- 250 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~- 250 (489)
+.|+++|..... ...+...........+- -..-..++++|++..++++.+.++.|++||..++....+.
T Consensus 646 ~~Ir~id~~~~~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G 722 (1057)
T PLN02919 646 HALREIDFVNET---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSG 722 (1057)
T ss_pred ceEEEEecCCCE---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEec
Confidence 789999974321 01111000000000000 1133579999955547788888999999998775411000
Q ss_pred -----eccCC------CCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCc
Q 037120 251 -----LSTGS------HGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGR 289 (489)
Q Consensus 251 -----~~~~h------~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~ 289 (489)
...++ -.....++++|++..|+++.. ++.|++||+.++.
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG 773 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence 00010 123457999999986666644 8999999998764
No 272
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.79 E-value=8.6e-09 Score=108.91 Aligned_cols=155 Identities=18% Similarity=0.207 Sum_probs=117.3
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE--
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA-- 174 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~-- 174 (489)
..|+.+.|+.+|+.+..+..||.+-+|.+... +-..++.|... ...++|-.. +++++
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk---------------~~~s~qchnk~---~~Df~Fi~s---~~~tag~ 2310 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK---------------PYTSWQCHNKA---LSDFRFIGS---LLATAGR 2310 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccCCc---------------ceeccccCCcc---ccceeeeeh---hhhcccc
Confidence 45889999999999999999999999988742 22223556666 455777652 44443
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
+.|++.+.+||.... +...+++ ..|...++++++-|..+ +|++|+.+|.|++||++..+ ..+.+..
T Consensus 2311 s~d~~n~~lwDtl~~---------~~~s~v~--~~H~~gaT~l~~~P~~q-llisggr~G~v~l~D~rqrq--l~h~~~~ 2376 (2439)
T KOG1064|consen 2311 SSDNRNVCLWDTLLP---------PMNSLVH--TCHDGGATVLAYAPKHQ-LLISGGRKGEVCLFDIRQRQ--LRHTFQA 2376 (2439)
T ss_pred CCCCCcccchhcccC---------cccceee--eecCCCceEEEEcCcce-EEEecCCcCcEEEeehHHHH--HHHHhhh
Confidence 344589999997322 2333344 66999999999999999 99999999999999999865 3333321
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
++ ...++++|+..|.|+||++.....++++..
T Consensus 2377 ---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2377 ---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred ---------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 44 667889999999999999999887877763
No 273
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.78 E-value=7.2e-08 Score=84.39 Aligned_cols=185 Identities=19% Similarity=0.325 Sum_probs=110.3
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcc-cccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC-CCCEEEEE
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLY-YQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA-NQDEVACA 174 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~-~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~-~~~~l~s~ 174 (489)
.-|+++.|...|.|||+|...|.|.+|.-+... |..+-. ..+...+.+..+.....-...|..+.|..+ +...++..
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~-teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFF-TEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhh-hhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 349999999999999999999999999776532 111100 000001111111111111123777888644 33344444
Q ss_pred ecCCCEEEEEEeccCC-----------------CCC----ceee-------------eeceeeeeecCCcccCeeEEEEe
Q 037120 175 STRSNVVSIYDIGYIS-----------------DEP----VEVL-------------KTRRSVTVVGSDVQKGLSDLAFS 220 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~-----------------~~~----~~~~-------------~~~~~~~~~~~~h~~~v~~~~~~ 220 (489)
+.| .+|++|.+.... ..+ .+.+ .+.+.+ -..|.--|+++.|+
T Consensus 106 tNd-ktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvy---aNaH~yhiNSiS~N 181 (460)
T COG5170 106 TND-KTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVY---ANAHPYHINSISFN 181 (460)
T ss_pred cCC-ceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceec---cccceeEeeeeeec
Confidence 445 999999986431 000 0000 011100 14588889999999
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCCcC-ceeeccCCC-----CceeEEEEeecCCEEE-EEeCCCeEEEEEcCCC
Q 037120 221 AVNTSRLIASDTHGVVNIWDRRVGVLP-SLELSTGSH-----GTLNSIQLHAENQIIF-AAGKHGSIYLWDLRGG 288 (489)
Q Consensus 221 ~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~h~-----~~v~~~~~~p~~~~l~-~~~~dg~i~lwd~~~~ 288 (489)
.|.+ .++++. |-.|.+|++...... .+-.++.|. .-|++..|+|....++ -.++.|.|++-|+|..
T Consensus 182 sD~e-t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 182 SDKE-TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS 254 (460)
T ss_pred Cchh-eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence 8887 666655 789999998765332 111233443 4588999999765544 4455999999999953
No 274
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.78 E-value=3.8e-05 Score=81.77 Aligned_cols=348 Identities=13% Similarity=0.124 Sum_probs=177.8
Q ss_pred CCceeEEEECCCCcEEEEEecCCeEEEEeCCCcc----cccC-CCCC----CCCCccccccccc----------------
Q 037120 96 KPGISALDFDCKGIYLVSATRSGCLTVHDFESLY----YQCN-GTLP----GVGLKEDQSKHLL---------------- 150 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~----~~~~-~~~~----~~g~~~~~~~~~~---------------- 150 (489)
..||.|++||||+.+||..+.++++.+.+-+-.. .... .... .+|=-..+..+.|
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 3579999999999999999999999876432110 0000 0000 0000000111111
Q ss_pred -----CCCCCCceeEEEeeCCCCCEEEEEe--cCC--CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec
Q 037120 151 -----HIPLPQQLDAVRWNLANQDEVACAS--TRS--NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA 221 (489)
Q Consensus 151 -----h~~~~~~V~~v~~~~~~~~~l~s~~--~d~--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 221 (489)
......+-..++|-.||+++.++.- ..+ ..++||+-. ..+.... ..-.+--..++|.|
T Consensus 200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-------G~L~stS------E~v~gLe~~l~WrP 266 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-------GELQSTS------EPVDGLEGALSWRP 266 (928)
T ss_pred ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-------ceEEecc------ccCCCccCCccCCC
Confidence 0000112456899999985444432 222 689999862 1121111 11111234689999
Q ss_pred CCCcEEEEEeC---CCcEEEEECCCCCcCceee-ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc--cceee
Q 037120 222 VNTSRLIASDT---HGVVNIWDRRVGVLPSLEL-STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT--SAPFH 295 (489)
Q Consensus 222 ~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~ 295 (489)
.|+ +|++... ...|.+|.-+--+...+.. +......|..++|++++..|+..-.|. |.+|-..+..- .+.+.
T Consensus 267 sG~-lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~ 344 (928)
T PF04762_consen 267 SGN-LIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIR 344 (928)
T ss_pred CCC-EEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEE
Confidence 998 8887763 3456667533211111211 113456789999999999998877655 99998876432 22222
Q ss_pred cCCccCCCCeeEEEeCCCCcce---ee-------------------------------------------------cccc
Q 037120 296 NHKEVCHLPLTSLKLASMLEKI---GT-------------------------------------------------LKAQ 323 (489)
Q Consensus 296 ~~~~~~~~~v~~l~~~~~~~~i---~~-------------------------------------------------~~~~ 323 (489)
-... ..+..+.|+|....- .+ +...
T Consensus 345 ~~~~---~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~ 421 (928)
T PF04762_consen 345 FSSS---ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSY 421 (928)
T ss_pred ccCC---CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhce
Confidence 1111 114446777654221 00 0000
Q ss_pred ceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCC--CCCCcC----CCCccccccCCCcceeecCCcE
Q 037120 324 SKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCP--PPAWLS----DSNNSADQLHLRKPSWLSTNSI 397 (489)
Q Consensus 324 ~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 397 (489)
.......|..++|++++..+++...++... ++............+ ...+.. ...........+.++|..++..
T Consensus 422 ~l~~~~~v~~vaf~~~~~~~avl~~d~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (928)
T PF04762_consen 422 ELELPSPVNDVAFSPSNSRFAVLTSDGSLS-IYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTL 500 (928)
T ss_pred EEcCCCCcEEEEEeCCCCeEEEEECCCCEE-EEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEE
Confidence 111255688888988887777777666521 111000000000000 000000 0001112244577888888766
Q ss_pred EEEeecC--CCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEE
Q 037120 398 YAVGSSS--DHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 398 ~l~sgs~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~ 475 (489)
+++.... -..+.++++..... . ..+.... .-.+.+..++..+....++.-..+|.+..+
T Consensus 501 ~~~~~~~~~~~~i~~~~~~~~~~-~------~~~~~~~------------~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~ 561 (928)
T PF04762_consen 501 LVLSDSDSNQSKIVLVDIDDSEN-S------ASVESST------------EVDGVVLIISSSPDSGSLYIQTNDGKVFQL 561 (928)
T ss_pred EEEEecCcccceEEEEEeccCCC-c------eeEEEEe------------ccCceEEEEeeCCCCcEEEEEECCCEEEEe
Confidence 6666553 35788888743300 0 1111111 234456666666665556666678888876
Q ss_pred eccccc
Q 037120 476 SQKQQC 481 (489)
Q Consensus 476 ~~~~~~ 481 (489)
+.....
T Consensus 562 ~~~~~~ 567 (928)
T PF04762_consen 562 SSDGEL 567 (928)
T ss_pred ecCCCc
Confidence 555543
No 275
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.77 E-value=1.6e-06 Score=74.71 Aligned_cols=171 Identities=9% Similarity=-0.061 Sum_probs=111.0
Q ss_pred CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEec
Q 037120 108 GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIG 187 (489)
Q Consensus 108 g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~ 187 (489)
..+||.|+.-|...+|...+.+.... .. ..|... |+-+.=.-+...-+..++.| .++++.++.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~-------~c------d~snn~---v~~~~r~cd~~~~~~i~snd-ht~k~~~~~ 146 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLY-------QC------DVSNND---VTLVKRYCDLKFPLNIASND-HTGKTMVVS 146 (344)
T ss_pred ccEEEeccccceeeeecccCccccee-------ee------cccccc---hhhhhhhcccccceeeccCC-cceeEEEEe
Confidence 46899999999999999986322211 00 111111 22222122222344555556 899999995
Q ss_pred cCCCCCceeeeeceeeeeecCCccc--CeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee-eccCCCCceeEEEE
Q 037120 188 YISDEPVEVLKTRRSVTVVGSDVQK--GLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE-LSTGSHGTLNSIQL 264 (489)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~h~~~v~~~~~ 264 (489)
....+ . .-|.. .++++++++++. ++++.+....|..|.+.....-.++ .....++.-.+..|
T Consensus 147 ~~s~~--~------------~~h~~~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~ 211 (344)
T KOG4532|consen 147 GDSNK--F------------AVHNQNLTQNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSF 211 (344)
T ss_pred cCccc--c------------eeeccccceeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeee
Confidence 44322 1 11222 388999999999 9999999999999988765433333 22344455678999
Q ss_pred eecCCEEEEEeCCCeEEEEEcCCCcccc-----eeecCCccCCCCeeEEEeCCCC
Q 037120 265 HAENQIIFAAGKHGSIYLWDLRGGRTSA-----PFHNHKEVCHLPLTSLKLASML 314 (489)
Q Consensus 265 ~p~~~~l~~~~~dg~i~lwd~~~~~~~~-----~~~~~~~~~~~~v~~l~~~~~~ 314 (489)
+.....++++..||++.|||+|...... +-..|.++ ++.+.|++.|
T Consensus 212 s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa----~R~c~Fsl~g 262 (344)
T KOG4532|consen 212 SENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGA----FRVCRFSLYG 262 (344)
T ss_pred ccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCc----eEEEEecCCC
Confidence 9999999999999999999999865422 22245555 8888888744
No 276
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=2e-06 Score=81.48 Aligned_cols=186 Identities=16% Similarity=0.162 Sum_probs=122.1
Q ss_pred CCCceeEEEECCCC--cEEEE-----EecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCC
Q 037120 95 GKPGISALDFDCKG--IYLVS-----ATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLAN 167 (489)
Q Consensus 95 ~~~~V~~~~fs~~g--~~la~-----g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~ 167 (489)
+..+|+.+++||.+ ..+|+ ++.-+.|+||.+........ .... ..-... =..+.|++-+
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~---------~a~k--sFFkad---kvqm~WN~~g 229 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQP---------VANK--SFFKAD---KVQMKWNKLG 229 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccch---------hhhc--cccccc---eeEEEeccCC
Confidence 34678899999873 33443 35567899998763111110 0000 011111 1237899988
Q ss_pred CCEEEEEecC----------CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEE--eCCCc
Q 037120 168 QDEVACASTR----------SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIAS--DTHGV 235 (489)
Q Consensus 168 ~~~l~s~~~d----------~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~--s~dg~ 235 (489)
..+|+.++.| ..++++.++.. . .. ...+ .-.++|.++.|+|++. .|+.+ -.-..
T Consensus 230 t~LLvLastdVDktn~SYYGEq~Lyll~t~g---~--s~-------~V~L-~k~GPVhdv~W~~s~~-EF~VvyGfMPAk 295 (566)
T KOG2315|consen 230 TALLVLASTDVDKTNASYYGEQTLYLLATQG---E--SV-------SVPL-LKEGPVHDVTWSPSGR-EFAVVYGFMPAK 295 (566)
T ss_pred ceEEEEEEEeecCCCccccccceEEEEEecC---c--eE-------EEec-CCCCCceEEEECCCCC-EEEEEEecccce
Confidence 8887776655 23566666631 1 11 1111 1245999999999998 55443 36778
Q ss_pred EEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC---CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCC
Q 037120 236 VNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK---HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLAS 312 (489)
Q Consensus 236 i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~---dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 312 (489)
+.|+|++-. .+..+ .+++=+++-|+|.|++++.+|. -|.+-+||+.+.+++..+.... -+-+.|+|
T Consensus 296 vtifnlr~~---~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~------tt~~eW~P 364 (566)
T KOG2315|consen 296 VTIFNLRGK---PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN------TTVFEWSP 364 (566)
T ss_pred EEEEcCCCC---EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC------ceEEEEcC
Confidence 999999852 23233 3678889999999999988877 7899999999988888887644 56778999
Q ss_pred CCcceee
Q 037120 313 MLEKIGT 319 (489)
Q Consensus 313 ~~~~i~~ 319 (489)
||+++.+
T Consensus 365 dGe~flT 371 (566)
T KOG2315|consen 365 DGEYFLT 371 (566)
T ss_pred CCcEEEE
Confidence 9988854
No 277
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.67 E-value=4.9e-07 Score=80.44 Aligned_cols=233 Identities=11% Similarity=0.170 Sum_probs=150.4
Q ss_pred eeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc--CceeeccCCCCceeEEEEeecCCEEEEEeCCCeEE
Q 037120 204 TVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL--PSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIY 281 (489)
Q Consensus 204 ~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~ 281 (489)
.....||.+.|++...-|..+ -+++.+.|.+++||--+...+ +.+.. .-..+++++.+.+....|++|-..|++.
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds~q~wpsI~~--~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEE-GVISVSEDRTVRVWLKRDSGQYWPSIYH--YMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhcCchhhhhhheeccCCC-CeEEccccceeeeEEeccccccCchhhh--hCCCCceEeeeeccceEEEEEEecceEE
Confidence 334588999999999999888 899999999999996554321 22222 2256789999999999999998899999
Q ss_pred EEEcCC----CcccceeecCCccCCCCeeEEEeCCCCcceeecc--ccceee----ccce--eEE-EeCCCCCeEEEEEe
Q 037120 282 LWDLRG----GRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLK--AQSKIV----SQEI--HSI-DLDPSCSYQLAFHL 348 (489)
Q Consensus 282 lwd~~~----~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~--~~~~~~----~~~i--~~~-~~~p~~~~~~~~~~ 348 (489)
-+.+.. ...++....|... +..+-|+-.-+.+.+.. .+..-+ ...+ +-+ .....-.+.+.+..
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~----v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~f 169 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQAR----VSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAF 169 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcc----eeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEE
Confidence 886643 2235556677755 88888876665553211 110000 0000 000 00000111111222
Q ss_pred --cCCce-----------EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccC
Q 037120 349 --DDGWS-----------GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFP 415 (489)
Q Consensus 349 --~~~w~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~ 415 (489)
+..|. .++-...+++..+.+. .|... ..++.+|+.|..+.+||+..
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l--~Wd~~-------------------~~~LfSg~~d~~vi~wdigg 228 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCL--KWDPG-------------------QRLLFSGASDHSVIMWDIGG 228 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEE--EEcCC-------------------CcEEEeccccCceEEEeccC
Confidence 22231 2233334555554444 44444 77899999999999999976
Q ss_pred CCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccccccccc
Q 037120 416 GSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCTSDS 485 (489)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~~~~ 485 (489)
.. ....++. +|.+.|..+..-+.-..+.++++||.|.+|.=+.+-...|
T Consensus 229 ~~---------g~~~el~------------gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etp 277 (404)
T KOG1409|consen 229 RK---------GTAYELQ------------GHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETP 277 (404)
T ss_pred Cc---------ceeeeec------------cchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCc
Confidence 61 2334455 8999999999998889999999999999997766655544
No 278
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=5.3e-06 Score=78.55 Aligned_cols=268 Identities=11% Similarity=0.141 Sum_probs=150.0
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC-----
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT----- 232 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~----- 232 (489)
=+-+.|||.|. .|++-- -.-|.+|-- ......+.|. | ..|.-+.|+|..+ +|+|-+.
T Consensus 213 etyv~wSP~GT-YL~t~H--k~GI~lWGG--------~~f~r~~RF~-----H-p~Vq~idfSP~Ek-YLVT~s~~p~~~ 274 (698)
T KOG2314|consen 213 ETYVRWSPKGT-YLVTFH--KQGIALWGG--------ESFDRIQRFY-----H-PGVQFIDFSPNEK-YLVTYSPEPIIV 274 (698)
T ss_pred eeeEEecCCce-EEEEEe--ccceeeecC--------ccHHHHHhcc-----C-CCceeeecCCccc-eEEEecCCcccc
Confidence 45599999997 566665 256888965 2222233331 2 2688899999998 8888772
Q ss_pred ------CCcEEEEECCCCCcC-ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc--cceeecCCccCCC
Q 037120 233 ------HGVVNIWDRRVGVLP-SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVCHL 303 (489)
Q Consensus 233 ------dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~ 303 (489)
...++|||+++|... ....+......-.-+.||.|+++++.-.. ..|.||+..+... .+.++- ..
T Consensus 275 ~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki--~g--- 348 (698)
T KOG2314|consen 275 EEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKI--SG--- 348 (698)
T ss_pred CcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCC--cc---
Confidence 157899999998622 11111111222335789999999877665 5799999887544 223322 23
Q ss_pred CeeEEEeCCCCcceeeccccceeeccceeEE---------------------EeCCCCCeEEEEEecCCceEEEEeeccc
Q 037120 304 PLTSLKLASMLEKIGTLKAQSKIVSQEIHSI---------------------DLDPSCSYQLAFHLDDGWSGVLDVYNSR 362 (489)
Q Consensus 304 ~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~---------------------~~~p~~~~~~~~~~~~~w~~~~~~~~~~ 362 (489)
|....|+|.+..++--..+.......+.-+ .+..+|.++........=.+ ..|.
T Consensus 349 -Ir~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~----~~g~ 423 (698)
T KOG2314|consen 349 -IRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSK----VKGQ 423 (698)
T ss_pred -ccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccc----ccce
Confidence 889999999888854333332222333222 23333333332211111000 0000
Q ss_pred eeeecCCCCCCcC-CCCcccccc----CCCcceeecCCcEEEEeecCCC--cEEEEeccCCCCCCeeeccCcccchhhHh
Q 037120 363 VSHVHCPPPAWLS-DSNNSADQL----HLRKPSWLSTNSIYAVGSSSDH--GIHLLDFFPGSSSPSHVDYNEDIESLSER 435 (489)
Q Consensus 363 ~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~l~sgs~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 435 (489)
..++. .|.. ..+.+.+.. .+-..+|-|.|.++++..+.+. ++.+|.+.+....+ +.+..+.
T Consensus 424 f~n~e----IfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~------~lVk~~d-- 491 (698)
T KOG2314|consen 424 FSNLE----IFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP------SLVKELD-- 491 (698)
T ss_pred EeeEE----EEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCch------hhhhhhc--
Confidence 00000 0000 001111111 1234789999999988766664 78888887541111 2222222
Q ss_pred hhhcccCCcccCCCceEEEEeeCCCCeEEecc---CcceeEEEecc
Q 037120 436 TKLKKENRFVPLSEGVTACVTHPLNNTIVAGT---KNSSLLVVSQK 478 (489)
Q Consensus 436 ~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs---~dg~i~v~~~~ 478 (489)
....+.+-|+|.|.+++.++ ..|.+.++...
T Consensus 492 ------------k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 492 ------------KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred ------------ccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 13468899999999777664 46777776543
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=2.1e-07 Score=87.57 Aligned_cols=159 Identities=17% Similarity=0.216 Sum_probs=95.6
Q ss_pred ccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcE
Q 037120 147 KHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSR 226 (489)
Q Consensus 147 ~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 226 (489)
.++||... |.+++-- ++++-+++++.| .+|++|.++....+. .. ..+..++..|+.+|+++.|..+.. .
T Consensus 730 nf~GH~~~---iRai~Ai-dNENSFiSASkD-KTVKLWSik~EgD~~-~t----saCQfTY~aHkk~i~~igfL~~lr-~ 798 (1034)
T KOG4190|consen 730 NFTGHQEK---IRAIAAI-DNENSFISASKD-KTVKLWSIKPEGDEI-GT----SACQFTYQAHKKPIHDIGFLADLR-S 798 (1034)
T ss_pred cccCcHHH---hHHHHhc-ccccceeeccCC-ceEEEEEeccccCcc-cc----ceeeeEhhhccCcccceeeeeccc-e
Confidence 35677776 4444432 344578888888 999999996433221 11 112334488999999999998877 5
Q ss_pred EEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEee--cCCEEEEEeC-CCeEEEEEcCCCcccceeecCCccC-C
Q 037120 227 LIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHA--ENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEVC-H 302 (489)
Q Consensus 227 l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~-~ 302 (489)
+++ .||.|++||.-.+............+.+..+..-| +...+++|+. ..+|+++|.|...-...++...... .
T Consensus 799 i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 799 IAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN 876 (1034)
T ss_pred eee--ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence 554 48999999987654211001111223333333333 4566677745 9999999999877655554322110 1
Q ss_pred CCeeEEEeCCCCccee
Q 037120 303 LPLTSLKLASMLEKIG 318 (489)
Q Consensus 303 ~~v~~l~~~~~~~~i~ 318 (489)
..+++++..+.|..++
T Consensus 877 a~~R~iaVa~~GN~lA 892 (1034)
T KOG4190|consen 877 ALTRAIAVADKGNKLA 892 (1034)
T ss_pred hheeEEEeccCcchhh
Confidence 2266666666665553
No 280
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.62 E-value=1e-05 Score=78.85 Aligned_cols=179 Identities=10% Similarity=0.008 Sum_probs=103.7
Q ss_pred ceeEEEECCCCcE-EEEEec---CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 98 GISALDFDCKGIY-LVSATR---SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 98 ~V~~~~fs~~g~~-la~g~~---dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
.+..-.|+|||+. ++..+. +..|.++|+.+++.... ... ... +....|+|++..++++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l---------t~~------~g~---~~~~~~SPDG~~la~~ 250 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI---------ASS------QGM---LVVSDVSKDGSKLLLT 250 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE---------ecC------CCc---EEeeEECCCCCEEEEE
Confidence 4668899999985 665444 35688888877433221 000 111 5567899999877776
Q ss_pred EecC-CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC--cEEEEECCCCCcCcee
Q 037120 174 ASTR-SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG--VVNIWDRRVGVLPSLE 250 (489)
Q Consensus 174 ~~~d-~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~ 250 (489)
.+.+ +..|.++|+..+ .. ..+ ..+........|+|||+.++++....+ .|.++|+.+++.. +
T Consensus 251 ~~~~g~~~Iy~~dl~~g--~~-~~L----------T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~--r 315 (419)
T PRK04043 251 MAPKGQPDIYLYDTNTK--TL-TQI----------TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE--Q 315 (419)
T ss_pred EccCCCcEEEEEECCCC--cE-EEc----------ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE--e
Confidence 6544 245666676322 11 111 111112334579999994444444434 6888888876632 2
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCC---------CeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKH---------GSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~d---------g~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
.... +. ....|+|+|+.++..+.. ..|.+.|+.++.. ..+... .. .....|+|||+.+.
T Consensus 316 lt~~--g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~----~~~p~~SPDG~~I~ 383 (419)
T PRK04043 316 VVFH--GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GV----NQFPRFSSDGGSIM 383 (419)
T ss_pred CccC--CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CC----cCCeEECCCCCEEE
Confidence 2211 11 124899999998877653 3688888877653 333321 12 33467888887664
No 281
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.61 E-value=4.8e-07 Score=88.15 Aligned_cols=185 Identities=16% Similarity=0.251 Sum_probs=123.6
Q ss_pred eeEEEECCC--CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCccccccc--ccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 99 ISALDFDCK--GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKH--LLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 99 V~~~~fs~~--g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~--~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
|-.+.|+|. -.+-++.+....-.||++.... ....++ -+|... |+.+-|+|+...+++++
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss-------------~~aIef~lhghsra---itd~n~~~q~pdVlatc 133 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS-------------SNAIEFVLHGHSRA---ITDINFNPQHPDVLATC 133 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCC-------------ccceEEEEecCccc---eeccccCCCCCcceeec
Confidence 445566655 3455555555666789887621 122223 345555 88899999999999999
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
+-| -.+..||++... .-+ .. ...-......++|+-..+ .+++.+..+.|++||++.+..+.. ..++
T Consensus 134 svd-t~vh~wd~rSp~----~p~---ys----~~~w~s~asqVkwnyk~p-~vlasshg~~i~vwd~r~gs~pl~-s~K~ 199 (1081)
T KOG0309|consen 134 SVD-TYVHAWDMRSPH----RPF---YS----TSSWRSAASQVKWNYKDP-NVLASSHGNDIFVWDLRKGSTPLC-SLKG 199 (1081)
T ss_pred ccc-ccceeeeccCCC----cce---ee----eecccccCceeeecccCc-chhhhccCCceEEEeccCCCcceE-Eecc
Confidence 999 999999995321 111 11 122234667899999888 566677788999999999887733 5567
Q ss_pred CCCceeEEEEeec-CCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcc
Q 037120 255 SHGTLNSIQLHAE-NQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEK 316 (489)
Q Consensus 255 h~~~v~~~~~~p~-~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 316 (489)
|...|+.++|+.- -..+.+.+.||+|+.||..+... ...+......||..-++-|-|+.
T Consensus 200 ~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~---e~~~~vtt~~piw~~r~~Pfg~g 259 (1081)
T KOG0309|consen 200 HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT---ESKRTVTTNFPIWRGRYLPFGEG 259 (1081)
T ss_pred cceeeehHHHhhhhhhhhcccCCCCceeeeccccccc---ccceeccccCcceeccccccCce
Confidence 8899999999763 33466777799999999876432 11111111234777777776643
No 282
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.58 E-value=2.7e-05 Score=73.15 Aligned_cols=265 Identities=12% Similarity=0.031 Sum_probs=148.9
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
..-.+..+.|||.|.+|++....| |.+|+......... ..|.. |..+.|+|.+. .|++-
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~---------------~~~~~----V~~~~fSP~~k-YL~tw 89 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVR---------------FRHPD----VKYLDFSPNEK-YLVTW 89 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheee---------------eecCC----ceecccCcccc-eeeee
Confidence 334588889999999999988765 88998776331110 11222 77799999986 55543
Q ss_pred ecC--------------CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccC--ee-EEEEecCCCcEEEEEeCCCcEE
Q 037120 175 STR--------------SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKG--LS-DLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 175 ~~d--------------~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
+.. ++.+.+||+..+ .++... .+...+ .+ -+.|+-++. +++-. ....++
T Consensus 90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg-----~iv~sf-------~~~~q~~~~Wp~~k~s~~D~-y~ARv-v~~sl~ 155 (561)
T COG5354 90 SREPIIEPEIEISPFTSKNNVFVWDIASG-----MIVFSF-------NGISQPYLGWPVLKFSIDDK-YVARV-VGSSLY 155 (561)
T ss_pred ccCCccChhhccCCccccCceeEEeccCc-----eeEeec-------cccCCcccccceeeeeecch-hhhhh-ccCeEE
Confidence 322 246899999432 232221 222222 34 578888887 55544 356799
Q ss_pred EEECCCCCcC--ceeeccCCCCceeEEEEeecCCE--EEE-----EeCCCeEEEEEcCCCcccceeecCCccCCCCeeEE
Q 037120 238 IWDRRVGVLP--SLELSTGSHGTLNSIQLHAENQI--IFA-----AGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSL 308 (489)
Q Consensus 238 iwd~~~~~~~--~~~~~~~h~~~v~~~~~~p~~~~--l~~-----~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l 308 (489)
|+++ ++... ..+.+. ...|....|+|.++. |+. .+.++++++|.+..++.+.+-.-.+-. =..+
T Consensus 156 i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~----~~qL 228 (561)
T COG5354 156 IHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVS----GVQL 228 (561)
T ss_pred EEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeec----ccEE
Confidence 9997 43321 222222 367888999997443 221 244889999999866653332211111 3467
Q ss_pred EeCCCCcceeecc-----------------------c---cceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccc
Q 037120 309 KLASMLEKIGTLK-----------------------A---QSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSR 362 (489)
Q Consensus 309 ~~~~~~~~i~~~~-----------------------~---~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~ 362 (489)
.|++.|.++.-+. . .......+|..+.|.|.+..+++++.-..- .+..+.-.
T Consensus 229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa--~~s~~~lr 306 (561)
T COG5354 229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPA--SVSVFDLR 306 (561)
T ss_pred EEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEeccccc--ceeecccc
Confidence 7888887762110 0 011235678899999998887766522211 11111111
Q ss_pred eeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCC---CcEEEEeccCC
Q 037120 363 VSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSD---HGIHLLDFFPG 416 (489)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d---~~i~vwd~~~~ 416 (489)
-+-.+.. .+ -.+.++.|+|.+...|+. +-| |.|-+||....
T Consensus 307 ~Nl~~~~----Pe--------~~rNT~~fsp~~r~il~a-gF~nl~gni~i~~~~~r 350 (561)
T COG5354 307 GNLRFYF----PE--------QKRNTIFFSPHERYILFA-GFDNLQGNIEIFDPAGR 350 (561)
T ss_pred cceEEec----CC--------cccccccccCcccEEEEe-cCCccccceEEeccCCc
Confidence 1111110 00 223456677775555554 344 58899988765
No 283
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=5e-06 Score=81.74 Aligned_cols=135 Identities=15% Similarity=0.282 Sum_probs=98.7
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCC-----------CcE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVN-----------TSR 226 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~~~ 226 (489)
-.++.|+|.| +++-|+ ...|.+-|.+. ++..+.. .-|...|+.+.|.|-. .-+
T Consensus 18 ~~A~Dw~~~G--LiAygs--hslV~VVDs~s--------~q~iqsi----e~h~s~V~~VrWap~~~p~~llS~~~~~ll 81 (1062)
T KOG1912|consen 18 RNAADWSPSG--LIAYGS--HSLVSVVDSRS--------LQLIQSI----ELHQSAVTSVRWAPAPSPRDLLSPSSSQLL 81 (1062)
T ss_pred ccccccCccc--eEEEec--CceEEEEehhh--------hhhhhcc----ccCccceeEEEeccCCCchhccCcccccee
Confidence 4458999986 888888 67999999832 2223333 6688999999998732 226
Q ss_pred EEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeec---C-CEEEEEeCCCeEEEEEcCCCcccceeecCCccCC
Q 037120 227 LIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAE---N-QIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCH 302 (489)
Q Consensus 227 l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~---~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~ 302 (489)
|+++...|.|.+||...+. .+..+..|..++..++|-|. . ..+++-....+|.+|+..+|+.+-......+.
T Consensus 82 iAsaD~~GrIil~d~~~~s--~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i-- 157 (1062)
T KOG1912|consen 82 IASADISGRIILVDFVLAS--VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI-- 157 (1062)
T ss_pred EEeccccCcEEEEEehhhh--hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcc--
Confidence 7778888999999999876 33345678889999999763 3 34555567889999999999876555433333
Q ss_pred CCeeEEEeCCCC
Q 037120 303 LPLTSLKLASML 314 (489)
Q Consensus 303 ~~v~~l~~~~~~ 314 (489)
..++.+.|-.
T Consensus 158 --Ls~f~~DPfd 167 (1062)
T KOG1912|consen 158 --LSCFRVDPFD 167 (1062)
T ss_pred --eeeeeeCCCC
Confidence 6778888754
No 284
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.56 E-value=2.1e-07 Score=57.20 Aligned_cols=37 Identities=22% Similarity=0.513 Sum_probs=34.6
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEE
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWD 284 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd 284 (489)
++..+.+|...|++++|+|++.++++++.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4567789999999999999999999999999999998
No 285
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.55 E-value=9.5e-05 Score=69.30 Aligned_cols=74 Identities=15% Similarity=0.141 Sum_probs=48.2
Q ss_pred ECCCCcEEEEEec----------CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 104 FDCKGIYLVSATR----------SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 104 fs~~g~~la~g~~----------dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
++|||+.|.++.. +..|.|||..+.+.....+.+ +..++. .... -..++++|+++.++++
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p------~~p~~~-~~~~---~~~~~ls~dgk~l~V~ 122 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP------EGPRFL-VGTY---PWMTSLTPDNKTLLFY 122 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC------CCchhh-ccCc---cceEEECCCCCEEEEe
Confidence 8999988876655 789999999997766542110 110100 0011 2348999999866665
Q ss_pred EecCCCEEEEEEec
Q 037120 174 ASTRSNVVSIYDIG 187 (489)
Q Consensus 174 ~~~d~g~i~vwd~~ 187 (489)
--..++.|.+.|+.
T Consensus 123 n~~p~~~V~VvD~~ 136 (352)
T TIGR02658 123 QFSPSPAVGVVDLE 136 (352)
T ss_pred cCCCCCEEEEEECC
Confidence 54424999999994
No 286
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.55 E-value=7.7e-05 Score=65.50 Aligned_cols=221 Identities=16% Similarity=0.259 Sum_probs=121.5
Q ss_pred EEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEE
Q 037120 102 LDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVV 181 (489)
Q Consensus 102 ~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i 181 (489)
++.+.+|++||.-. |..|.|=.......... ..+....+..-+=.-++|+||+. +|+.+... |+|
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~------------~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~-G~i 67 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSII------------GKCQVPKDPNPQWRKLAWSPDCT-LLAYAEST-GTI 67 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchhee------------EEEecCCCCCchheEEEECCCCc-EEEEEcCC-CeE
Confidence 56778998888764 66777766554211110 01111222222245699999986 67666666 999
Q ss_pred EEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCC-----CcEEEEEeCCCcEEEEECCCCCcC------cee
Q 037120 182 SIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVN-----TSRLIASDTHGVVNIWDRRVGVLP------SLE 250 (489)
Q Consensus 182 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----~~~l~s~s~dg~i~iwd~~~~~~~------~~~ 250 (489)
++||+... . ...+.+...+ ...-..+|..+.|.+.. ...|+.-..+|.++-|-+..+... .+.
T Consensus 68 ~vfdl~g~--~-lf~I~p~~~~---~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs 141 (282)
T PF15492_consen 68 RVFDLMGS--E-LFVIPPAMSF---PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS 141 (282)
T ss_pred EEEecccc--e-eEEcCccccc---CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE
Confidence 99999421 0 1122221111 01234577778776543 235777778888887776432111 122
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeC-CCe----------EEEEEcCCCcccce-eecCCccCCCCeeEE----EeCCCC
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGK-HGS----------IYLWDLRGGRTSAP-FHNHKEVCHLPLTSL----KLASML 314 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~----------i~lwd~~~~~~~~~-~~~~~~~~~~~v~~l----~~~~~~ 314 (489)
....+...|+++.++|..++|++||. ... +..|-+-++..-.. .....+. +... .+.
T Consensus 142 f~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~----~~~~~~~~~~~--- 214 (282)
T PF15492_consen 142 FSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDD----ITASSKRRGLL--- 214 (282)
T ss_pred ecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcc----cccccccccee---
Confidence 22244678999999999999998876 221 33444443332111 1111111 1100 000
Q ss_pred cceeecccc--ceeeccceeEEEeCCCCCeEEEEEecCC
Q 037120 315 EKIGTLKAQ--SKIVSQEIHSIDLDPSCSYQLAFHLDDG 351 (489)
Q Consensus 315 ~~i~~~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~ 351 (489)
.+.+++.. .......|..|.+|||+..+++.+..+.
T Consensus 215 -~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~ 252 (282)
T PF15492_consen 215 -RIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGS 252 (282)
T ss_pred -eccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCe
Confidence 01111111 1123567899999999999999998887
No 287
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.55 E-value=3.5e-05 Score=72.48 Aligned_cols=273 Identities=15% Similarity=0.168 Sum_probs=153.5
Q ss_pred CCceeEEEECCCCcEEEEEecCCe---------------EEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeE
Q 037120 96 KPGISALDFDCKGIYLVSATRSGC---------------LTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDA 160 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~dg~---------------i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~ 160 (489)
+..|.-+.|+|.++||.+=+.-+. +.|||+.++..+..-. ... ....+++ -
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~------~~~------q~~~~Wp--~ 136 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFN------GIS------QPYLGWP--V 136 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeecc------ccC------Ccccccc--e
Confidence 356899999999999998765444 8899999866665310 111 1111221 3
Q ss_pred EEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCc-EEEE-----EeCCC
Q 037120 161 VRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTS-RLIA-----SDTHG 234 (489)
Q Consensus 161 v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s-----~s~dg 234 (489)
+.|+-+..+ ++-.. ...+.|+++...... .+.... -...|....|+|.+++ .|+. .+.++
T Consensus 137 ~k~s~~D~y-~ARvv--~~sl~i~e~t~n~~~-----~p~~~l------r~~gi~dFsisP~~n~~~la~~tPEk~~kpa 202 (561)
T COG5354 137 LKFSIDDKY-VARVV--GSSLYIHEITDNIEE-----HPFKNL------RPVGILDFSISPEGNHDELAYWTPEKLNKPA 202 (561)
T ss_pred eeeeecchh-hhhhc--cCeEEEEecCCcccc-----Cchhhc------cccceeeEEecCCCCCceEEEEccccCCCCc
Confidence 778877653 33333 258999997221110 111100 1246788888887542 3343 24678
Q ss_pred cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-----------CCeEEEEEcCCCcccceeecCCccCCC
Q 037120 235 VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-----------HGSIYLWDLRGGRTSAPFHNHKEVCHL 303 (489)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-----------dg~i~lwd~~~~~~~~~~~~~~~~~~~ 303 (489)
++++|.+..++....+.+. ...-..+.|++.|+++++--. ...++|++++... +.......+
T Consensus 203 ~~~i~sIp~~s~l~tk~lf--k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~---- 275 (561)
T COG5354 203 MVRILSIPKNSVLVTKNLF--KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKD---- 275 (561)
T ss_pred EEEEEEccCCCeeeeeeeE--eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccc----
Confidence 8999998865422222221 223346788999987654311 3568888887433 222223344
Q ss_pred CeeEEEeCCCCcceeeccc---------------cceeeccceeEEEeCCCCCeEEEEEecCCc--eEEEEeeccceeee
Q 037120 304 PLTSLKLASMLEKIGTLKA---------------QSKIVSQEIHSIDLDPSCSYQLAFHLDDGW--SGVLDVYNSRVSHV 366 (489)
Q Consensus 304 ~v~~l~~~~~~~~i~~~~~---------------~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w--~~~~~~~~~~~~~~ 366 (489)
||-.++|.|.+..++.+.. ........-..+.|+|.+++++..+.++.. ..+++.....+...
T Consensus 276 pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~ 355 (561)
T COG5354 276 PVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAG 355 (561)
T ss_pred cceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEE
Confidence 4999999999987754220 001112333456789999999998877752 12222211111000
Q ss_pred cCCCCCCcCCCCccccccCCCcceeecCCcEEEEee-----cCCCcEEEEeccCC
Q 037120 367 HCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGS-----SSDHGIHLLDFFPG 416 (489)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-----s~d~~i~vwd~~~~ 416 (489)
.+...+ .....|+|++..|.+.- -.|+.|.|||+...
T Consensus 356 -----~~~~~n--------~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 356 -----AFNGLN--------TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred -----EeecCC--------ceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 010110 11234666666665542 24789999999866
No 288
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.53 E-value=4.6e-07 Score=77.55 Aligned_cols=74 Identities=19% Similarity=0.496 Sum_probs=65.1
Q ss_pred CeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCC
Q 037120 213 GLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHA-ENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~~~~~dg~i~lwd~~~ 287 (489)
.|.+++-+|..++++++|+.||.+-+||.|....+ ...+..|+.+|+.+-|+| ++..|++++.||.+-.||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p-~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP-VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccch-HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 48999999988888999999999999999987655 446779999999999999 467899999999999999875
No 289
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=5.6e-07 Score=80.11 Aligned_cols=87 Identities=18% Similarity=0.263 Sum_probs=69.3
Q ss_pred cccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc---CceeeccCCCCceeEEEEee-cCCEEEEEeCCCeEEEEEc
Q 037120 210 VQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL---PSLELSTGSHGTLNSIQLHA-ENQIIFAAGKHGSIYLWDL 285 (489)
Q Consensus 210 h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~h~~~v~~~~~~p-~~~~l~~~~~dg~i~lwd~ 285 (489)
-...|.++.|...++ ++..|...|.|..+|+|...+ .+.+.+ -|.+.|+|+..-. ++++|++.+-+|+|++||+
T Consensus 251 sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 345788899998888 999999999999999998621 133333 6889999998877 7888888888999999999
Q ss_pred CCCcc---cceeecCC
Q 037120 286 RGGRT---SAPFHNHK 298 (489)
Q Consensus 286 ~~~~~---~~~~~~~~ 298 (489)
|.-++ +.+.++|.
T Consensus 329 R~~K~~~~V~qYeGHv 344 (425)
T KOG2695|consen 329 RATKCKKSVMQYEGHV 344 (425)
T ss_pred hhhhcccceeeeeccc
Confidence 98776 56666654
No 290
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.49 E-value=2.4e-05 Score=72.82 Aligned_cols=185 Identities=12% Similarity=0.115 Sum_probs=123.8
Q ss_pred EECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEE-eeCCCCCEEEEEecCCCEE
Q 037120 103 DFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVR-WNLANQDEVACASTRSNVV 181 (489)
Q Consensus 103 ~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~-~~~~~~~~l~s~~~d~g~i 181 (489)
..+.||+.++-. .-|.|.+||.++.....-+... .+....+. ..-..++.-+. |++....+++..+ .|+.
T Consensus 273 ~~nsDGkrIvFq-~~GdIylydP~td~lekldI~l---pl~rk~k~---~k~~~pskyledfa~~~Gd~ia~VS--RGka 343 (668)
T COG4946 273 NANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGL---PLDRKKKQ---PKFVNPSKYLEDFAVVNGDYIALVS--RGKA 343 (668)
T ss_pred ccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCC---cccccccc---ccccCHHHhhhhhccCCCcEEEEEe--cCcE
Confidence 345667766543 4577999999885444322100 00000000 00000011122 5555556888888 6888
Q ss_pred EEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC-cEEEEECCCCCcCceeeccCCCCcee
Q 037120 182 SIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG-VVNIWDRRVGVLPSLELSTGSHGTLN 260 (489)
Q Consensus 182 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~h~~~v~ 260 (489)
.|.+...+ .++ + .+|...|.-..+..+++ -++.|..|| .+-|+|.++++ ++.+...-+.|.
T Consensus 344 Fi~~~~~~-----~~i---q------v~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e---~kr~e~~lg~I~ 405 (668)
T COG4946 344 FIMRPWDG-----YSI---Q------VGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGE---VKRIEKDLGNIE 405 (668)
T ss_pred EEECCCCC-----eeE---E------cCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCce---EEEeeCCccceE
Confidence 88877322 111 1 45667888888888888 888899999 89999999886 334555568899
Q ss_pred EEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 261 SIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 261 ~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
++..+|+|++++++-....|-+.|+.+++....-+...+. |+.+.|+|+++.++
T Consensus 406 av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~l----Itdf~~~~nsr~iA 459 (668)
T COG4946 406 AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGL----ITDFDWHPNSRWIA 459 (668)
T ss_pred EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccce----eEEEEEcCCceeEE
Confidence 9999999999999988999999999998863333333444 99999999999884
No 291
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=4e-07 Score=90.41 Aligned_cols=193 Identities=13% Similarity=0.106 Sum_probs=112.1
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccC-----------CCCCCCCCcc--------ccccc----
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCN-----------GTLPGVGLKE--------DQSKH---- 148 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~-----------~~~~~~g~~~--------~~~~~---- 148 (489)
|..+..+-+|++|+-+.++|+.|+..|.|++|++.++..... +++.. |... +...+
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~d-gs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVD-GSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCC-cceeeeeccccCchHHHhccc
Confidence 455667799999999999999999999999999987432211 00000 0000 00000
Q ss_pred ----ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC
Q 037120 149 ----LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT 224 (489)
Q Consensus 149 ----~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 224 (489)
..|+.. .-.++.|+...+..+++... ....|||+.+. ..+ ..+.....+.+..-+...|+|++.
T Consensus 1176 s~~~~~Hsf~--ed~~vkFsn~~q~r~~gt~~--d~a~~YDvqT~-----~~l---~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1176 STGGPRHSFD--EDKAVKFSNSLQFRALGTEA--DDALLYDVQTC-----SPL---QTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred cccCcccccc--ccceeehhhhHHHHHhcccc--cceEEEecccC-----cHH---HHhcCcchhhhhhccccccCCCcc
Confidence 012211 13345665544333333332 35677777322 111 111111111222336778999988
Q ss_pred cEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCC
Q 037120 225 SRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLP 304 (489)
Q Consensus 225 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~ 304 (489)
+++- || .+||+|..+ .++.+...+..+ .-.|+|+|..++.-+ -|||+|+.+.++......
T Consensus 1244 -LIln---dG--vLWDvR~~~--aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld------ 1303 (1516)
T KOG1832|consen 1244 -LILN---DG--VLWDVRIPE--AIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD------ 1303 (1516)
T ss_pred -eEee---Cc--eeeeeccHH--HHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHHhcCcccc------
Confidence 6553 44 479999865 444443222111 346999999988866 489999999888777544
Q ss_pred eeEEEeCCCCcce
Q 037120 305 LTSLKLASMLEKI 317 (489)
Q Consensus 305 v~~l~~~~~~~~i 317 (489)
-..+.|+..|..+
T Consensus 1304 qc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1304 QCAVTFNSTGDVM 1316 (1516)
T ss_pred ceEEEeccCccch
Confidence 4678888888766
No 292
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.47 E-value=1.9e-05 Score=85.55 Aligned_cols=182 Identities=9% Similarity=0.008 Sum_probs=110.5
Q ss_pred eeEEEECC-CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 99 ISALDFDC-KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 99 V~~~~fs~-~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
-..++|+| +|.++++.+.++.|++||..+........ .|....................++|+|++..++++.+.+
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G---~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n 761 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSG---DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES 761 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEec---CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC
Confidence 35789999 57777888889999999987743321100 000000000000000111245599999987677777766
Q ss_pred CCEEEEEEeccCCCCCceeeeece----eeeeecCC--------cccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRR----SVTVVGSD--------VQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGV 245 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~--------h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 245 (489)
+.|++||+..+.. ..+.... .....+.. .-..-..+++.++|. ++++-+.++.|++||..++.
T Consensus 762 -~~Irv~D~~tg~~---~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 762 -SSIRALDLKTGGS---RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred -CeEEEEECCCCcE---EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCe
Confidence 9999999853321 1100000 00000000 111235789999998 88888899999999998764
Q ss_pred cCceeec-------------cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc
Q 037120 246 LPSLELS-------------TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT 290 (489)
Q Consensus 246 ~~~~~~~-------------~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~ 290 (489)
+.... .+.-.....++++++|+.+++-+.++.|++||+++++.
T Consensus 837 --v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 837 --VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred --EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 22111 01123467899999999877777799999999998764
No 293
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.47 E-value=5.7e-07 Score=55.24 Aligned_cols=35 Identities=17% Similarity=0.390 Sum_probs=32.3
Q ss_pred eecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 037120 205 VVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD 240 (489)
Q Consensus 205 ~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd 240 (489)
.++.+|...|++|+|+|++. +|++++.|+.|++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 34588999999999999988 999999999999998
No 294
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.45 E-value=0.00012 Score=66.20 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=65.3
Q ss_pred eEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeee--eceeeeeecCCcccCeeEEEEecCCCcEEEEEe-----
Q 037120 159 DAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLK--TRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD----- 231 (489)
Q Consensus 159 ~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s----- 231 (489)
..++.+|.....++.+-.-.....+||...+... ..+. +.+.| .|| -.|++||. +|++.-
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~--~~~~a~~gRHF----yGH------g~fs~dG~-~LytTEnd~~~ 74 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL--QRLWAPPGRHF----YGH------GVFSPDGR-LLYTTENDYET 74 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee--eEEcCCCCCEE----ecC------EEEcCCCC-EEEEeccccCC
Confidence 3478888766677777666456789998554322 2222 22222 444 47999999 776654
Q ss_pred CCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEE
Q 037120 232 THGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAA 274 (489)
Q Consensus 232 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~ 274 (489)
..|.|-|||...+ ...+..+..|.-.-..+.+.|+|+.|+++
T Consensus 75 g~G~IgVyd~~~~-~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 75 GRGVIGVYDAARG-YRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred CcEEEEEEECcCC-cEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 3578999999942 22333444444445578899999887776
No 295
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.41 E-value=3.7e-05 Score=74.93 Aligned_cols=98 Identities=10% Similarity=0.077 Sum_probs=62.5
Q ss_pred CeeEEEEecCCCcEEEEEeC---CCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC---CCeEEEEEcC
Q 037120 213 GLSDLAFSAVNTSRLIASDT---HGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK---HGSIYLWDLR 286 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~---dg~i~lwd~~ 286 (489)
.+....|+|+|+..++..+. +..|.++|+.+++...+. ...+......|+|||+.++.... +..|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 56678999999843554332 457999999887643332 23455667889999987766543 4678888988
Q ss_pred CCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 287 GGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
+++. ..+..+... .....|+|||+.++
T Consensus 266 ~g~~-~~LT~~~~~----d~~p~~SPDG~~I~ 292 (419)
T PRK04043 266 TKTL-TQITNYPGI----DVNGNFVEDDKRIV 292 (419)
T ss_pred CCcE-EEcccCCCc----cCccEECCCCCEEE
Confidence 7653 333332222 23346777776554
No 296
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.39 E-value=3.4e-05 Score=66.71 Aligned_cols=152 Identities=13% Similarity=0.052 Sum_probs=99.5
Q ss_pred EEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCC
Q 037120 111 LVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYIS 190 (489)
Q Consensus 111 la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~ 190 (489)
+..++.|.++++.+++.... ....|..... +.+++.++++. ++++.+.. ..|..|.+....
T Consensus 131 ~~i~sndht~k~~~~~~~s~----------------~~~~h~~~~~-~ns~~~snd~~-~~~~Vgds-~~Vf~y~id~~s 191 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSN----------------KFAVHNQNLT-QNSLHYSNDPS-WGSSVGDS-RRVFRYAIDDES 191 (344)
T ss_pred eeeccCCcceeEEEEecCcc----------------cceeeccccc-eeeeEEcCCCc-eEEEecCC-CcceEEEeCCcc
Confidence 44556666777776654111 1123433211 67799999986 55555544 899999984332
Q ss_pred CCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce---eeccCCCCceeEEEEeec
Q 037120 191 DEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL---ELSTGSHGTLNSIQLHAE 267 (489)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~h~~~v~~~~~~p~ 267 (489)
.. .+. . + ....++.=.+..|+..+. .||++..||++.|||+|....+.. .....|.+.+..+.|++.
T Consensus 192 ey---~~~-~--~---~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~ 261 (344)
T KOG4532|consen 192 EY---IEN-I--Y---EAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLY 261 (344)
T ss_pred ce---eee-e--E---ecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCC
Confidence 21 111 1 1 122334456678888887 999999999999999998765422 122268999999999987
Q ss_pred CC--EEEEEeCCCeEEEEEcCCCccc
Q 037120 268 NQ--IIFAAGKHGSIYLWDLRGGRTS 291 (489)
Q Consensus 268 ~~--~l~~~~~dg~i~lwd~~~~~~~ 291 (489)
|. +|+..-.-+.+.+-|+|+++..
T Consensus 262 g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 262 GLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred CcceEEEEecCcceEEEEEcccCcee
Confidence 65 3555545788999999998753
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.38 E-value=2.4e-06 Score=77.76 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=61.9
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEE
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLI 228 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 228 (489)
.||.+. ++.|+|+||++ .++++..| ..|+|-..... ..+ ..| +.||+.-|..++..++. .|+
T Consensus 148 lGhvSm---l~dVavS~D~~-~IitaDRD-EkIRvs~ypa~-----f~I---esf---clGH~eFVS~isl~~~~--~Ll 209 (390)
T KOG3914|consen 148 LGHVSM---LLDVAVSPDDQ-FIITADRD-EKIRVSRYPAT-----FVI---ESF---CLGHKEFVSTISLTDNY--LLL 209 (390)
T ss_pred hhhhhh---hheeeecCCCC-EEEEecCC-ceEEEEecCcc-----cch---hhh---ccccHhheeeeeeccCc--eee
Confidence 456666 88899999985 88888888 89998877211 111 111 27899999999987644 589
Q ss_pred EEeCCCcEEEEECCCCCc
Q 037120 229 ASDTHGVVNIWDRRVGVL 246 (489)
Q Consensus 229 s~s~dg~i~iwd~~~~~~ 246 (489)
++|.|++|++||+++++.
T Consensus 210 S~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 210 SGSGDKTLRLWDITSGKL 227 (390)
T ss_pred ecCCCCcEEEEecccCCc
Confidence 999999999999999873
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.37 E-value=2.1e-06 Score=73.59 Aligned_cols=75 Identities=17% Similarity=0.312 Sum_probs=62.3
Q ss_pred ceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcE
Q 037120 157 QLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVV 236 (489)
Q Consensus 157 ~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i 236 (489)
.|++++-+|..++++++|+.| |.+.+||.+... - ....+..|...++.+.|+|.++..|+++++||.+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~d-g~~~l~d~rn~~-~----------p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGsl 248 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDD-GIVGLWDARNVA-M----------PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSL 248 (319)
T ss_pred cchhhhCCcccccEEEEecCC-CeEEEEEccccc-c----------hHHHHHHhhhhhhheeccCCCchheeEecCCCcE
Confidence 388899999988888888888 999999995431 1 1112367999999999999999899999999999
Q ss_pred EEEECCC
Q 037120 237 NIWDRRV 243 (489)
Q Consensus 237 ~iwd~~~ 243 (489)
..||..+
T Consensus 249 w~wdas~ 255 (319)
T KOG4714|consen 249 WHWDAST 255 (319)
T ss_pred EEEcCCC
Confidence 9999874
No 299
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.37 E-value=1.4e-06 Score=76.56 Aligned_cols=191 Identities=10% Similarity=0.151 Sum_probs=116.3
Q ss_pred CceeEEEECCCC--cEEEEEecCCeEEEEeCCCcc--cccC-CCCCC-----CC-----------Cccccccc-------
Q 037120 97 PGISALDFDCKG--IYLVSATRSGCLTVHDFESLY--YQCN-GTLPG-----VG-----------LKEDQSKH------- 148 (489)
Q Consensus 97 ~~V~~~~fs~~g--~~la~g~~dg~i~vwd~~~~~--~~~~-~~~~~-----~g-----------~~~~~~~~------- 148 (489)
+.|..|.|-.++ ..++..+.|.+|++|.+.... .+.. +.+.+ .| .+..|...
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 347888887653 456677789999999876531 1111 10000 00 11111111
Q ss_pred ---ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCc
Q 037120 149 ---LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTS 225 (489)
Q Consensus 149 ---~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 225 (489)
..|... |.++.|+.+.+ .++++. +=.|.+|++...... -.+...+ .+.+..-+..|++..|+|...+
T Consensus 166 vyaNaH~yh---iNSiS~NsD~e-t~lSaD--dLrINLWnl~i~D~s--FnIVDiK--P~nmeeLteVItSaeFhp~~cn 235 (460)
T COG5170 166 VYANAHPYH---INSISFNSDKE-TLLSAD--DLRINLWNLEIIDGS--FNIVDIK--PHNMEELTEVITSAEFHPEMCN 235 (460)
T ss_pred eccccceeE---eeeeeecCchh-eeeecc--ceeeeeccccccCCc--eEEEecc--CccHHHHHHHHhhcccCHhHcc
Confidence 123334 88899999875 566665 589999998533221 1111110 0111333457899999999888
Q ss_pred EEEEEeCCCcEEEEECCCCCcC-----cee---------eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-
Q 037120 226 RLIASDTHGVVNIWDRRVGVLP-----SLE---------LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT- 290 (489)
Q Consensus 226 ~l~s~s~dg~i~iwd~~~~~~~-----~~~---------~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~- 290 (489)
+|...+..|.|++-|+|..... ... .+..-...|..+.|+++|+++++-.. -+|+|||.+..+.
T Consensus 236 ~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p 314 (460)
T COG5170 236 VFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP 314 (460)
T ss_pred eEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC
Confidence 8888888999999999954211 000 11122356789999999999877544 5899999998554
Q ss_pred cceeecCC
Q 037120 291 SAPFHNHK 298 (489)
Q Consensus 291 ~~~~~~~~ 298 (489)
++++..|.
T Consensus 315 ikTi~~h~ 322 (460)
T COG5170 315 IKTIPMHC 322 (460)
T ss_pred ceeechHH
Confidence 66665543
No 300
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=2.6e-05 Score=72.13 Aligned_cols=240 Identities=13% Similarity=0.074 Sum_probs=144.5
Q ss_pred cccCCCceeEEEECCCCcEEEEEec-CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCC---
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATR-SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLAN--- 167 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~-dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~--- 167 (489)
|..|...|.+++.+.+|.++++++. |..+++||+++.....-. .+...+ ..+.|....
T Consensus 49 FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminmi------KL~~lP------------g~a~wv~skGd~ 110 (558)
T KOG0882|consen 49 FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMI------KLVDLP------------GFAEWVTSKGDK 110 (558)
T ss_pred hHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhc------ccccCC------------CceEEecCCCCe
Confidence 3344445888889999999999888 999999999874333210 011111 114443221
Q ss_pred CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCC-Cc
Q 037120 168 QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVG-VL 246 (489)
Q Consensus 168 ~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~ 246 (489)
..+++.+..+++.+.|+|-.....+. .... .-|..+|..+.+.+.+. .+++....|.|..|..... +.
T Consensus 111 ~s~IAVs~~~sg~i~VvD~~~d~~q~----~~fk------klH~sPV~~i~y~qa~D-s~vSiD~~gmVEyWs~e~~~qf 179 (558)
T KOG0882|consen 111 ISLIAVSLFKSGKIFVVDGFGDFCQD----GYFK------KLHFSPVKKIRYNQAGD-SAVSIDISGMVEYWSAEGPFQF 179 (558)
T ss_pred eeeEEeecccCCCcEEECCcCCcCcc----ceec------ccccCceEEEEeecccc-ceeeccccceeEeecCCCcccC
Confidence 12556665566999999985433221 0111 34889999999999999 8899999999999987631 11
Q ss_pred C---c-ee--------eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccC------CCCeeEE
Q 037120 247 P---S-LE--------LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVC------HLPLTSL 308 (489)
Q Consensus 247 ~---~-~~--------~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~------~~~v~~l 308 (489)
+ . +. .+.-......++.|+|++..+.+-+.|..|++++.++|+.++.+....... ...+..+
T Consensus 180 Pr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~V 259 (558)
T KOG0882|consen 180 PRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHV 259 (558)
T ss_pred ccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccccee
Confidence 1 0 00 011223567899999999999998999999999999999877665321100 0113333
Q ss_pred EeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceee
Q 037120 309 KLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSH 365 (489)
Q Consensus 309 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~ 365 (489)
.|. +.++.-+...+.....-..+.|+..+.+++..+.-+ .+++++.++.+.+
T Consensus 260 elg---RRmaverelek~~~~~~~~~~fdes~~flly~t~~g--ikvin~~tn~v~r 311 (558)
T KOG0882|consen 260 ELG---RRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG--IKVINLDTNTVVR 311 (558)
T ss_pred ehh---hhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee--EEEEEeecCeEEE
Confidence 322 122211111122233445677888888877554322 1344444444333
No 301
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.23 E-value=4.4e-07 Score=87.18 Aligned_cols=191 Identities=15% Similarity=0.204 Sum_probs=121.8
Q ss_pred CceeEEEECCCC--cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 97 PGISALDFDCKG--IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 97 ~~V~~~~fs~~g--~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
+.+.|++...+. ..+++|..+|.|.+-.+........+ ...++... +++++|++-....|++|
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E------~tp~~ar~---------Ct~lAwneLDtn~LAag 121 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAE------VTPGYARP---------CTSLAWNELDTNHLAAG 121 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccce------eccccccc---------ccccccccccHHHHHhh
Confidence 458888877654 57899999999999988763322111 11222222 89999999877788877
Q ss_pred ecC---CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 175 STR---SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 175 ~~d---~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
-.. +-.+.|||+...-..|..... + . .+--...++++|..+.+ ++++|.....++++|+|.....+
T Consensus 122 ldkhrnds~~~Iwdi~s~ltvPke~~~----f--s-~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~--- 190 (783)
T KOG1008|consen 122 LDKHRNDSSLKIWDINSLLTVPKESPL----F--S-SSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSV--- 190 (783)
T ss_pred hhhhcccCCccceecccccCCCccccc----c--c-cccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhh---
Confidence 421 468999999544222211111 1 0 11223566899997777 88999999999999999542111
Q ss_pred ccCCCCceeEEEEee-cCCEEEEEeCCCeEEEEE-cCCCcc-cceeecCCccCCCCeeEEEeCCCC
Q 037120 252 STGSHGTLNSIQLHA-ENQIIFAAGKHGSIYLWD-LRGGRT-SAPFHNHKEVCHLPLTSLKLASML 314 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p-~~~~l~~~~~dg~i~lwd-~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~ 314 (489)
..-.+..+..+..+| .+.+ ++...||.|.+|| .++.+. +..+.......+..+..++|+|..
T Consensus 191 ~svnTk~vqG~tVdp~~~nY-~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 191 SSVNTKYVQGITVDPFSPNY-FCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred hhhhhhhcccceecCCCCCc-eeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence 112234566788889 5555 5555699999999 555444 333332222222448999999976
No 302
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.08 E-value=0.00042 Score=65.00 Aligned_cols=191 Identities=10% Similarity=0.131 Sum_probs=107.4
Q ss_pred eeEEEECCCCcEEEEEe-c-CCeEEEEeCCCcccccCCCCCCCCCc--ccccccccCCCCCC------------ceeEE-
Q 037120 99 ISALDFDCKGIYLVSAT-R-SGCLTVHDFESLYYQCNGTLPGVGLK--EDQSKHLLHIPLPQ------------QLDAV- 161 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~-~-dg~i~vwd~~~~~~~~~~~~~~~g~~--~~~~~~~~h~~~~~------------~V~~v- 161 (489)
-..++++|||++|.... . +..|.|.|+.+.+....-+-++-... .....+..|...+. .+...
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~ 186 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTE 186 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeee
Confidence 34789999999998776 3 78999999998765543111100000 00000000000000 00111
Q ss_pred -------------EeeC-CCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEE
Q 037120 162 -------------RWNL-ANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRL 227 (489)
Q Consensus 162 -------------~~~~-~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 227 (489)
.|.+ ++. .+.... .|+|.+.|+..........+.....-...-.-....+.-++++++++.++
T Consensus 187 vf~~~~~~v~~rP~~~~~dg~-~~~vs~--eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 187 VFHPEDEYLINHPAYSNKSGR-LVWPTY--TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eecCCccccccCCceEcCCCc-EEEEec--CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 2234 554 444444 38999999743322211111111000000011334555699999999444
Q ss_pred EEE---------eCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCC-EEEEEeC-CCeEEEEEcCCCcccceee
Q 037120 228 IAS---------DTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQ-IIFAAGK-HGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 228 ~s~---------s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~~~~~-dg~i~lwd~~~~~~~~~~~ 295 (489)
+.. ...+.|.++|..+.+ .+..+. -...+..++++||++ +|++... ++.|.++|..+++.+..+.
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~k--vi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGK--RLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCe--EEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 423 122589999999876 443332 235788999999999 8887764 8999999999998887773
No 303
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.08 E-value=0.0012 Score=64.11 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=63.8
Q ss_pred CcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC
Q 037120 209 DVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGG 288 (489)
Q Consensus 209 ~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~ 288 (489)
.....|.+++++|+.. .++.|+.||.|.+||...+... .....-..+.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~t~----~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSED-KLVLGCEDGSIILYDTTRGVTL----LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccc-eEEEEecCCeEEEEEcCCCeee----eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 4566899999999999 9999999999999999875422 2233456789999999999999999999999998754
Q ss_pred cc
Q 037120 289 RT 290 (489)
Q Consensus 289 ~~ 290 (489)
..
T Consensus 332 pi 333 (545)
T PF11768_consen 332 PI 333 (545)
T ss_pred cc
Confidence 33
No 304
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.02 E-value=0.0052 Score=58.94 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=39.5
Q ss_pred CCCCcEEEEEe---------cCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 105 DCKGIYLVSAT---------RSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 105 s~~g~~la~g~---------~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
|||+++++... ..+.+.|||+++.+..... ..... +....|+|++. .++-..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~---------~~~~~---------~~~~~~sP~g~-~~~~v~ 61 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT---------PPPPK---------LQDAKWSPDGK-YIAFVR 61 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS----------EETT---------BSEEEE-SSST-EEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc---------CCccc---------cccceeecCCC-eeEEEe
Confidence 57777777642 3567889999985554421 11111 67799999986 555555
Q ss_pred cCCCEEEEEEec
Q 037120 176 TRSNVVSIYDIG 187 (489)
Q Consensus 176 ~d~g~i~vwd~~ 187 (489)
++.|.++++.
T Consensus 62 --~~nly~~~~~ 71 (353)
T PF00930_consen 62 --DNNLYLRDLA 71 (353)
T ss_dssp --TTEEEEESST
T ss_pred --cCceEEEECC
Confidence 4899999874
No 305
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.0018 Score=65.35 Aligned_cols=196 Identities=14% Similarity=0.146 Sum_probs=119.4
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
.|.| |++.+..+|.|+.+|.|.+.+-.-.. ...+..+... |...-|.-+.+.+|++.+.|
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s~~~---------------~~~fqa~~~s---iv~~L~~~~~~~~L~sv~Ed 86 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSSFQL---------------IRGFQAYEQS---IVQFLYILNKQNFLFSVGED 86 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccccee---------------eehheecchh---hhhHhhcccCceEEEEEeec
Confidence 4555 57888999999999988877654311 0111222222 11123344455688887777
Q ss_pred CC----EEEEEEeccCC-CCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCC--CCcCcee
Q 037120 178 SN----VVSIYDIGYIS-DEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV--GVLPSLE 250 (489)
Q Consensus 178 ~g----~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~~~~~ 250 (489)
++ .|+|||+.... ..+...+...+.+.........++.+++.+.+-+ .++.|-.+|.|..+.-.- ....-..
T Consensus 87 ~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~ 165 (933)
T KOG2114|consen 87 EQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQD 165 (933)
T ss_pred CCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhcccccee
Confidence 55 79999996542 2211333222222222233466889999998877 899999999999884221 1100122
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCCc-cee
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASMLE-KIG 318 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~-~i~ 318 (489)
....-..+|+.+++..++..++-+.+-..|.+|.+..... +..+..|... +.+..+++... .++
T Consensus 166 ~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~----lnCss~~~~t~qfIc 231 (933)
T KOG2114|consen 166 YSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGIS----LNCSSFSDGTYQFIC 231 (933)
T ss_pred eeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCcc----ceeeecCCCCccEEE
Confidence 2224468999999999988844444456899999884332 4445555545 88888887665 444
No 306
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.00 E-value=5.4e-05 Score=73.02 Aligned_cols=74 Identities=9% Similarity=0.017 Sum_probs=57.4
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
+....|.|++++|+.+.|+.|+.||+|.+||......... ......+.++|+|++. +++.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-------------------ka~~~P~~iaWHp~ga-i~~V 316 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-------------------KAEFIPTLIAWHPDGA-IFVV 316 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-------------------eecccceEEEEcCCCc-EEEE
Confidence 3456799999999999999999999999999987322211 0111167799999986 7777
Q ss_pred EecCCCEEEEEEecc
Q 037120 174 ASTRSNVVSIYDIGY 188 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~ 188 (489)
|+.. |.+.+||+..
T Consensus 317 ~s~q-GelQ~FD~AL 330 (545)
T PF11768_consen 317 GSEQ-GELQCFDMAL 330 (545)
T ss_pred EcCC-ceEEEEEeec
Confidence 7766 9999999963
No 307
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.89 E-value=0.019 Score=60.58 Aligned_cols=195 Identities=17% Similarity=0.245 Sum_probs=115.1
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..|.++.|--++.-++.+..+|.|.+-|.++..... .+... .+|.+++|+|+.+ +++-...
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei----------------vg~vd--~GI~aaswS~Dee-~l~liT~ 129 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI----------------VGNVD--NGISAASWSPDEE-LLALITG 129 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee----------------eeecc--CceEEEeecCCCc-EEEEEeC
Confidence 359999999999999999999999999887733222 22222 1299999999987 4444443
Q ss_pred CCCEEEEEEecc--CCCCC-----------cee-eee-ceeee------------e-----ecCCcccCeeEEEEecCCC
Q 037120 177 RSNVVSIYDIGY--ISDEP-----------VEV-LKT-RRSVT------------V-----VGSDVQKGLSDLAFSAVNT 224 (489)
Q Consensus 177 d~g~i~vwd~~~--~~~~~-----------~~~-~~~-~~~~~------------~-----~~~~h~~~v~~~~~~~~~~ 224 (489)
+ +++.+-+-.. ....+ ..+ ... ...+. . ....-.+.=++|.|--||+
T Consensus 130 ~-~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~ 208 (1265)
T KOG1920|consen 130 R-QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE 208 (1265)
T ss_pred C-cEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc
Confidence 3 5665543311 00000 000 000 00000 0 0000112234689999998
Q ss_pred cEEEEEe----CC-CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC---CCeEEEEEcCCCcc---cce
Q 037120 225 SRLIASD----TH-GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK---HGSIYLWDLRGGRT---SAP 293 (489)
Q Consensus 225 ~~l~s~s----~d-g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~---dg~i~lwd~~~~~~---~~~ 293 (489)
+|+... .+ ..|++||.+ +.... ......+.-.+++|-|.|..+++... |+.|.+|.-+..+. .-.
T Consensus 209 -~fAVs~~~~~~~~RkirV~drE-g~Lns--~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~ 284 (1265)
T KOG1920|consen 209 -YFAVSFVESETGTRKIRVYDRE-GALNS--TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLP 284 (1265)
T ss_pred -EEEEEEEeccCCceeEEEeccc-chhhc--ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccC
Confidence 777633 34 789999977 43111 11122333458999999999888743 77899998543221 222
Q ss_pred eecCCccCCCCeeEEEeCCCCcceee
Q 037120 294 FHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 294 ~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
+...... +..++|+.++..++.
T Consensus 285 ~p~de~~----ve~L~Wns~sdiLAv 306 (1265)
T KOG1920|consen 285 FPLDEKE----VEELAWNSNSDILAV 306 (1265)
T ss_pred Ccccccc----hheeeecCCCCceee
Confidence 2332333 899999999887764
No 308
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.88 E-value=0.0074 Score=58.58 Aligned_cols=152 Identities=13% Similarity=0.056 Sum_probs=78.8
Q ss_pred CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeE-EEeeCCCCCEEEEEecCCCEEEEEE
Q 037120 107 KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDA-VRWNLANQDEVACASTRSNVVSIYD 185 (489)
Q Consensus 107 ~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~-v~~~~~~~~~l~s~~~d~g~i~vwd 185 (489)
++..++.++.+|.+..+|..+++..-.. .... . +.+ .... +. .++.+..+ +.|..||
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~------~~~~---------~---~~~~p~v~--~~-~v~v~~~~-g~l~a~d 161 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRA------KLSS---------E---VLSPPLVA--NG-LVVVRTND-GRLTALD 161 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeee------ccCc---------e---eecCCEEE--CC-EEEEECCC-CeEEEEE
Confidence 4567788888999999998875443211 0000 0 110 1111 22 44445555 9999999
Q ss_pred eccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC---C-----
Q 037120 186 IGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH---G----- 257 (489)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~---~----- 257 (489)
...+... -........ ..+.. . .+.... +. .++.+..++.+..+|.++++.. .+...... .
T Consensus 162 ~~tG~~~--W~~~~~~~~-~~~~~---~-~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~-W~~~~~~~~g~~~~~~~ 230 (377)
T TIGR03300 162 AATGERL--WTYSRVTPA-LTLRG---S-ASPVIA--DG-GVLVGFAGGKLVALDLQTGQPL-WEQRVALPKGRTELERL 230 (377)
T ss_pred cCCCcee--eEEccCCCc-eeecC---C-CCCEEE--CC-EEEEECCCCEEEEEEccCCCEe-eeeccccCCCCCchhhh
Confidence 8544211 000000000 00000 0 111111 23 6777888899999999887632 11110000 0
Q ss_pred -ce-eEEEEeecCCEEEEEeCCCeEEEEEcCCCcccce
Q 037120 258 -TL-NSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAP 293 (489)
Q Consensus 258 -~v-~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~ 293 (489)
.+ .+..+ .+..+++++.+|.++.||..+|+.+..
T Consensus 231 ~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~ 266 (377)
T TIGR03300 231 VDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWK 266 (377)
T ss_pred hccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEe
Confidence 01 11111 356788888899999999999876443
No 309
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.87 E-value=0.011 Score=57.39 Aligned_cols=145 Identities=14% Similarity=0.059 Sum_probs=78.9
Q ss_pred CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEec
Q 037120 108 GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIG 187 (489)
Q Consensus 108 g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~ 187 (489)
+..+.+++.+|.|..+|..+++..-.. .... .. ...... ++. .++.++.+ +.+..+|..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~------~~~~--~~---------~~~p~v--~~~-~v~v~~~~-g~l~ald~~ 123 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRV------DLDE--RL---------SGGVGA--DGG-LVFVGTEK-GEVIALDAE 123 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeee------cCCC--Cc---------ccceEE--cCC-EEEEEcCC-CEEEEEECC
Confidence 567888889999999998875443210 0000 00 011222 232 55556656 999999984
Q ss_pred cCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCce-----eEE
Q 037120 188 YISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTL-----NSI 262 (489)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v-----~~~ 262 (489)
.+. .+-... +.+ .+.+.-.. .+. .++.++.++.|..||.++++.. .+ .......+ .+.
T Consensus 124 tG~-----~~W~~~-----~~~---~~~~~p~v-~~~-~v~v~~~~g~l~a~d~~tG~~~-W~-~~~~~~~~~~~~~~sp 186 (377)
T TIGR03300 124 DGK-----ELWRAK-----LSS---EVLSPPLV-ANG-LVVVRTNDGRLTALDAATGERL-WT-YSRVTPALTLRGSASP 186 (377)
T ss_pred CCc-----Eeeeec-----cCc---eeecCCEE-ECC-EEEEECCCCeEEEEEcCCCcee-eE-EccCCCceeecCCCCC
Confidence 432 111111 011 11111111 234 5677778999999999988632 21 11111100 111
Q ss_pred EEeecCCEEEEEeCCCeEEEEEcCCCcccc
Q 037120 263 QLHAENQIIFAAGKHGSIYLWDLRGGRTSA 292 (489)
Q Consensus 263 ~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~ 292 (489)
.. .+..++.+..+|.+..+|+++|+.+.
T Consensus 187 ~~--~~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 187 VI--ADGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred EE--ECCEEEEECCCCEEEEEEccCCCEee
Confidence 22 13467788889999999999987643
No 310
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.84 E-value=0.0077 Score=54.54 Aligned_cols=182 Identities=14% Similarity=0.042 Sum_probs=105.7
Q ss_pred eeEEEEC-CCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 99 ISALDFD-CKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 99 V~~~~fs-~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
...+++. ++|.++++ ..+ .+.++|..+.+.... ...............+++.+++. +.++....
T Consensus 42 ~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~g~~~~~------------~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~ 106 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVA-DSG-GIAVVDPDTGKVTVL------------ADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGG 106 (246)
T ss_dssp EEEEEEECTTSEEEEE-ETT-CEEEEETTTTEEEEE------------EEEETTCSCTEEEEEEEE-TTS--EEEEEECC
T ss_pred CceEEEEccCCEEEEE-EcC-ceEEEecCCCcEEEE------------eeccCCCcccCCCceEEEcCCCC-EEEEecCC
Confidence 6677788 67655554 444 456668887433321 00000000112277899999986 66555422
Q ss_pred C-------CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC---
Q 037120 178 S-------NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP--- 247 (489)
Q Consensus 178 ~-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--- 247 (489)
. |.|..++.. . +. ..+. ..-...+.|+|+|+++.++++-+..+.|..+|+......
T Consensus 107 ~~~~~~~~g~v~~~~~~-~--~~-~~~~----------~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~ 172 (246)
T PF08450_consen 107 GGASGIDPGSVYRIDPD-G--KV-TVVA----------DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN 172 (246)
T ss_dssp BCTTCGGSEEEEEEETT-S--EE-EEEE----------EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE
T ss_pred CccccccccceEEECCC-C--eE-EEEe----------cCcccccceEECCcchheeecccccceeEEEeccccccceee
Confidence 0 345555552 1 10 1111 112357899999999845567778899999998754321
Q ss_pred --ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeC-CCC
Q 037120 248 --SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLA-SML 314 (489)
Q Consensus 248 --~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~ 314 (489)
.+..+....+..-.++++.+|++.++....+.|.++|.+ |+.+..+...... +++++|. ++.
T Consensus 173 ~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~----~t~~~fgg~~~ 237 (246)
T PF08450_consen 173 RRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPR----PTNCAFGGPDG 237 (246)
T ss_dssp EEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSS----EEEEEEESTTS
T ss_pred eeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCC----EEEEEEECCCC
Confidence 111111212346789999999887777779999999988 7877777654334 8888883 443
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.83 E-value=0.0067 Score=55.16 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=67.5
Q ss_pred CeeEEEEecCCCcEEEEEeCCCc-EEEEECCCCCcCceeeccCCCCce--eEEEEeecCCEEEEEeC-----CCeEEEEE
Q 037120 213 GLSDLAFSAVNTSRLIASDTHGV-VNIWDRRVGVLPSLELSTGSHGTL--NSIQLHAENQIIFAAGK-----HGSIYLWD 284 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~h~~~v--~~~~~~p~~~~l~~~~~-----dg~i~lwd 284 (489)
....++.+|.....++.+-.-|+ ..+||.++++.. ..+....+.- -.-.|+++|++|+++=. .|.|-|||
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~--~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL--QRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee--eEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 34567888966646666665554 678999988733 2222111111 13689999999999833 68999999
Q ss_pred cC-CCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 285 LR-GGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 285 ~~-~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
.. +.+.+.++..+.-. --.+.+.|||+.+
T Consensus 84 ~~~~~~ri~E~~s~GIG----PHel~l~pDG~tL 113 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIG----PHELLLMPDGETL 113 (305)
T ss_pred CcCCcEEEeEecCCCcC----hhhEEEcCCCCEE
Confidence 99 55668888877644 5677889999555
No 312
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.78 E-value=0.00025 Score=71.51 Aligned_cols=148 Identities=15% Similarity=0.207 Sum_probs=102.0
Q ss_pred CCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC--------
Q 037120 106 CKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR-------- 177 (489)
Q Consensus 106 ~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d-------- 177 (489)
.++++|.+|...|+|.+-|..+.+.+ ..+..|++. |.++... |. +|++++..
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~i--------------ht~~aHs~s---iSDfDv~--GN-lLitCG~S~R~~~l~~ 244 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETI--------------HTFDAHSGS---ISDFDVQ--GN-LLITCGYSMRRYNLAM 244 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCcee--------------eeeeccccc---eeeeecc--CC-eEEEeecccccccccc
Confidence 46789999999999999999984433 334556666 6555543 43 55555432
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc--eeeccCC
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS--LELSTGS 255 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~h 255 (489)
|.-|+|||++.. +.+.+.... ..-.-+.|+|.-...++.++..|...+-|..+-..+. +......
T Consensus 245 D~FvkVYDLRmm-----ral~PI~~~--------~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~ 311 (1118)
T KOG1275|consen 245 DPFVKVYDLRMM-----RALSPIQFP--------YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPN 311 (1118)
T ss_pred cchhhhhhhhhh-----hccCCcccc--------cCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccC
Confidence 356899999543 223333211 1124477888877789999999999999955443331 2223344
Q ss_pred CCceeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 037120 256 HGTLNSIQLHAENQIIFAAGKHGSIYLWDLR 286 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~ 286 (489)
...+..++++++++.++.|-.+|.|.+|--+
T Consensus 312 ~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 312 GSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 5669999999999999999999999999733
No 313
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.78 E-value=0.0043 Score=56.21 Aligned_cols=151 Identities=12% Similarity=0.074 Sum_probs=93.4
Q ss_pred CCceeEEEECCCCcEEEEEecC--------CeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCC
Q 037120 96 KPGISALDFDCKGIYLVSATRS--------GCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLAN 167 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~d--------g~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~ 167 (489)
....+.++++++|++.++-... |.|..++... .... ....... -..++|+|++
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~-~~~~---------~~~~~~~---------pNGi~~s~dg 145 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG-KVTV---------VADGLGF---------PNGIAFSPDG 145 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS-EEEE---------EEEEESS---------EEEEEEETTS
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC-eEEE---------EecCccc---------ccceEECCcc
Confidence 3458999999999988876654 4566666662 2111 1111122 5569999999
Q ss_pred CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC
Q 037120 168 QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP 247 (489)
Q Consensus 168 ~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 247 (489)
..++++-+.. +.|..+++..... .+...+.+ ..+..-....-.+++..+|. +.++....+.|.++|.+ ++
T Consensus 146 ~~lyv~ds~~-~~i~~~~~~~~~~----~~~~~~~~-~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G~-- 215 (246)
T PF08450_consen 146 KTLYVADSFN-GRIWRFDLDADGG----ELSNRRVF-IDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-GK-- 215 (246)
T ss_dssp SEEEEEETTT-TEEEEEEEETTTC----CEEEEEEE-EE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SC--
T ss_pred hheeeccccc-ceeEEEecccccc----ceeeeeeE-EEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-cc--
Confidence 7666677766 8999999853322 12212222 11222223467899999998 77777788999999987 55
Q ss_pred ceeeccCCCCceeEEEEe-ecCCEEEEEe
Q 037120 248 SLELSTGSHGTLNSIQLH-AENQIIFAAG 275 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~-p~~~~l~~~~ 275 (489)
.+..+.-....+++++|. ++...|+.++
T Consensus 216 ~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 216 LLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred EEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 333333233578999994 6767776664
No 314
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00012 Score=67.01 Aligned_cols=76 Identities=18% Similarity=0.187 Sum_probs=62.2
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|..++|+|...+++..++.+ ++|+|.|++.. .+. ..+ ..| ..+++++|..+..++|..|...|.|.
T Consensus 196 IrdlafSp~~~GLl~~asl~-nkiki~dlet~-----~~v---ssy----~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 196 IRDLAFSPFNEGLLGLASLG-NKIKIMDLETS-----CVV---SSY----IAY-NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred hhhhccCccccceeeeeccC-ceEEEEecccc-----eee---ehe----ecc-CCceeeeeccCCcceeEEeccCceEE
Confidence 88899999998899999988 99999999432 111 111 334 68999999999998889999999999
Q ss_pred EEECCCCCcC
Q 037120 238 IWDRRVGVLP 247 (489)
Q Consensus 238 iwd~~~~~~~ 247 (489)
|||+|..+.+
T Consensus 262 vyD~R~~~~~ 271 (463)
T KOG1645|consen 262 VYDMRQPEGP 271 (463)
T ss_pred EEEccCCCch
Confidence 9999988765
No 315
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.72 E-value=0.012 Score=58.98 Aligned_cols=186 Identities=10% Similarity=0.059 Sum_probs=109.0
Q ss_pred CCCceeEEEECCC------------CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEE
Q 037120 95 GKPGISALDFDCK------------GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVR 162 (489)
Q Consensus 95 ~~~~V~~~~fs~~------------g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~ 162 (489)
+...|+.+.|.|. .-+||++...|.|.|||......+.. + ..|.+. |..++
T Consensus 54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~--------l------~~~~~~---~qdl~ 116 (1062)
T KOG1912|consen 54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW--------L------SHSNDS---VQDLC 116 (1062)
T ss_pred CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh--------h------cCCCcc---hhhee
Confidence 3355777777764 23678888899999999987444331 2 223334 56688
Q ss_pred eeC---CCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 037120 163 WNL---ANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIW 239 (489)
Q Consensus 163 ~~~---~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iw 239 (489)
|-+ ++..+|++-..- .+|.+|+..++. ...+. ..-.....++.+.|-+...|..-+..|.+.+-
T Consensus 117 W~~~rd~Srd~LlaIh~s-s~lvLwntdtG~----k~Wk~--------~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~ 183 (1062)
T KOG1912|consen 117 WVPARDDSRDVLLAIHGS-STLVLWNTDTGE----KFWKY--------DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSC 183 (1062)
T ss_pred eeeccCcchheeEEecCC-cEEEEEEccCCc----eeecc--------ccCCcceeeeeeCCCCcceEEEEccCceEEEE
Confidence 854 333444443333 799999884431 11111 11223556688888776666666667877777
Q ss_pred ECCCCCcC-----ceeeccCCCC-------------------------ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCc
Q 037120 240 DRRVGVLP-----SLELSTGSHG-------------------------TLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR 289 (489)
Q Consensus 240 d~~~~~~~-----~~~~~~~h~~-------------------------~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~ 289 (489)
+.-..+.+ .+++...|++ ....++|+|.-+.++......-+.++|+.-..
T Consensus 184 ~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~ 263 (1062)
T KOG1912|consen 184 KDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC 263 (1062)
T ss_pred eccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc
Confidence 65432221 1222223322 01135678887777777778889999998766
Q ss_pred ccceeecCCccCCCCeeEEEeCCCC
Q 037120 290 TSAPFHNHKEVCHLPLTSLKLASML 314 (489)
Q Consensus 290 ~~~~~~~~~~~~~~~v~~l~~~~~~ 314 (489)
++....-..+. +.-+.|-|++
T Consensus 264 ~l~vvpier~~----akfv~vlP~~ 284 (1062)
T KOG1912|consen 264 CLAVVPIERGG----AKFVDVLPDP 284 (1062)
T ss_pred eeEEEEeccCC----cceeEeccCC
Confidence 66555543433 4445555554
No 316
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.0032 Score=63.54 Aligned_cols=188 Identities=18% Similarity=0.202 Sum_probs=115.2
Q ss_pred cccCCCc-eeEEEECCCCcEEEEEecCC-----eEEEEeCCCcccccCCCCCCCCCcccccccccCCC--CCCceeEEEe
Q 037120 92 RSFGKPG-ISALDFDCKGIYLVSATRSG-----CLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIP--LPQQLDAVRW 163 (489)
Q Consensus 92 ~~~~~~~-V~~~~fs~~g~~la~g~~dg-----~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~--~~~~V~~v~~ 163 (489)
|.+...+ |..+-...+..+|++.+.|+ .|+||+++....... |. .........|.. +..++.+++.
T Consensus 60 fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s---P~---c~~~~ri~~~~np~~~~p~s~l~V 133 (933)
T KOG2114|consen 60 FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS---PQ---CLYEHRIFTIKNPTNPSPASSLAV 133 (933)
T ss_pred heecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC---cc---eeeeeeeeccCCCCCCCcceEEEE
Confidence 5555556 55554445557888877765 589999987321110 10 110011111221 2455888999
Q ss_pred eCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 037120 164 NLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV 243 (489)
Q Consensus 164 ~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 243 (489)
+.+- ..+++|-.| |.|..+.-.-.... .....+. ..-..+|+.+++..++...++.+ .-..|.+|.+..
T Consensus 134 s~~l-~~Iv~Gf~n-G~V~~~~GDi~RDr-----gsr~~~~---~~~~~pITgL~~~~d~~s~lFv~-Tt~~V~~y~l~g 202 (933)
T KOG2114|consen 134 SEDL-KTIVCGFTN-GLVICYKGDILRDR-----GSRQDYS---HRGKEPITGLALRSDGKSVLFVA-TTEQVMLYSLSG 202 (933)
T ss_pred Eccc-cEEEEEecC-cEEEEEcCcchhcc-----ccceeee---ccCCCCceeeEEecCCceeEEEE-ecceeEEEEecC
Confidence 8885 478888877 99998854211100 0111121 22345999999999998433333 346899999884
Q ss_pred CCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee-cCC
Q 037120 244 GVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH-NHK 298 (489)
Q Consensus 244 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~-~~~ 298 (489)
+.|..+....|...++|..+++....+++++ +..+.+||....+.-..|. +|.
T Consensus 203 -r~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 203 -RTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred -CCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCe
Confidence 4355656778888999999998766555554 4579999988655555665 544
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.69 E-value=0.0016 Score=66.11 Aligned_cols=189 Identities=13% Similarity=0.176 Sum_probs=119.7
Q ss_pred EEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCe
Q 037120 226 RLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPL 305 (489)
Q Consensus 226 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v 305 (489)
.++-|+--..+..+|+++.+. .+...-..+.|.-+. .+++++++|...|+|.+-|.++.+.++++..|.+. |
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e--~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s----i 220 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKE--TRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS----I 220 (1118)
T ss_pred ceeecchhhheeeeeccccee--eeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccc----e
Confidence 677777777888999998652 222211122344443 46889999999999999999999999999999877 5
Q ss_pred eEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCc-----eEEEEeeccceeeecCCCCCCcCCCCcc
Q 037120 306 TSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGW-----SGVLDVYNSRVSHVHCPPPAWLSDSNNS 380 (489)
Q Consensus 306 ~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (489)
.++. -+|+.+++++..... ...+++|+-+..+...+ ..+..++
T Consensus 221 SDfD----------------------------v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P-I~~~~~P--- 268 (1118)
T KOG1275|consen 221 SDFD----------------------------VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP-IQFPYGP--- 268 (1118)
T ss_pred eeee----------------------------ccCCeEEEeecccccccccccchhhhhhhhhhhccCC-cccccCc---
Confidence 5443 344555555544331 24455555444332221 1222221
Q ss_pred ccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCC
Q 037120 381 ADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLN 460 (489)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~ 460 (489)
..+.|+|.-...++..|.-|...+-|..+-...+ ..+.-+. +....+.+.++++++
T Consensus 269 ------~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~------~~~~~v~------------p~~s~i~~fDiSsn~ 324 (1118)
T KOG1275|consen 269 ------QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP------AGVKMVN------------PNGSGISAFDISSNG 324 (1118)
T ss_pred ------hhhhhcccccceEEEEecccceeeccccccCCCc------cceeEEc------------cCCCcceeEEecCCC
Confidence 2345566666666767788888888833220000 0011111 344569999999999
Q ss_pred CeEEeccCcceeEEEecc
Q 037120 461 NTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 461 ~~i~sgs~dg~i~v~~~~ 478 (489)
+.+|.|..+|.|.+|++.
T Consensus 325 ~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 325 DALAFGDHEGHVNLWADR 342 (1118)
T ss_pred ceEEEecccCcEeeecCC
Confidence 999999999999999944
No 318
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.00099 Score=66.88 Aligned_cols=107 Identities=15% Similarity=0.165 Sum_probs=77.3
Q ss_pred EEECCCCcEEEEEec----CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 102 LDFDCKGIYLVSATR----SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 102 ~~fs~~g~~la~g~~----dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
..|+|...++|+++. .|.|.||-=.. ....+.....| +++++|+|.. .+|+.|..-
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfadtG-------------EPqr~Vt~P~h------atSLCWHpe~-~vLa~gwe~ 80 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFADTG-------------EPQRDVTYPVH------ATSLCWHPEE-FVLAQGWEM 80 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEecCC-------------CCCccccccee------hhhhccChHH-HHHhhcccc
Confidence 468888888888764 78899984322 11222222222 6779999985 478888877
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECC
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRR 242 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 242 (489)
|.+.+|...... .... ...|..+|..+.|+++|. .++|+..-|.|.+|-..
T Consensus 81 -g~~~v~~~~~~e------~htv------~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 81 -GVSDVQKTNTTE------THTV------VETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred -ceeEEEecCCce------eeee------ccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEee
Confidence 999999983321 1111 156899999999999999 99999999999999665
No 319
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.0045 Score=62.05 Aligned_cols=124 Identities=14% Similarity=0.044 Sum_probs=80.9
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
++|.+++. ..++-|..+ |.|++++..... . .. ..|+.. .-.|. +++||+.||.|.
T Consensus 42 is~~av~~---~~~~~GtH~-g~v~~~~~~~~~-~-------~~------~~~s~~------~~~Ge-y~asCS~DGkv~ 96 (846)
T KOG2066|consen 42 ISCCAVHD---KFFALGTHR-GAVYLTTCQGNP-K-------TN------FDHSSS------ILEGE-YVASCSDDGKVV 96 (846)
T ss_pred HHHHHhhc---ceeeecccc-ceEEEEecCCcc-c-------cc------cccccc------ccCCc-eEEEecCCCcEE
Confidence 55566653 378888887 999999983221 0 11 223333 44677 999999999999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeec-----CCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCC
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAE-----NQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLAS 312 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~-----~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 312 (489)
|--+-+++..+...+ ..++.+++++|+ .+.+++||.-| +.++.-+-.........|... ++|.++.|..
T Consensus 97 I~sl~~~~~~~~~df---~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e--G~I~~i~W~g 170 (846)
T KOG2066|consen 97 IGSLFTDDEITQYDF---KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE--GPIHSIKWRG 170 (846)
T ss_pred EeeccCCccceeEec---CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc--cceEEEEecC
Confidence 998887764332222 478999999998 56788998888 888775543332222222222 3477776653
No 320
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.65 E-value=0.0032 Score=63.43 Aligned_cols=139 Identities=15% Similarity=0.183 Sum_probs=91.1
Q ss_pred EEeeCCCCCEEEEEe---cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 161 VRWNLANQDEVACAS---TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 161 v~~~~~~~~~l~s~~---~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
..|+|..+ +++.++ ...|.|.||--... |..-+.. . -.+++++|+|..- .|+.|=.-|.+.
T Consensus 21 ~SWHPseP-lfAVA~fS~er~GSVtIfadtGE---Pqr~Vt~--------P---~hatSLCWHpe~~-vLa~gwe~g~~~ 84 (1416)
T KOG3617|consen 21 SSWHPSEP-LFAVASFSPERGGSVTIFADTGE---PQRDVTY--------P---VHATSLCWHPEEF-VLAQGWEMGVSD 84 (1416)
T ss_pred cccCCCCc-eeEEEEecCCCCceEEEEecCCC---CCccccc--------c---eehhhhccChHHH-HHhhccccceeE
Confidence 57888876 555443 11488888854221 2111110 1 1456799999877 888888999999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccc--eeecCCccCCCCeeEEEeCCCCc
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSA--PFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
+|...+.+ .-.....|..+|..+.|+++|..++++..-|.|.+|-......+. .+-.|.-..+....+..++++++
T Consensus 85 v~~~~~~e--~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~E 162 (1416)
T KOG3617|consen 85 VQKTNTTE--THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDRE 162 (1416)
T ss_pred EEecCCce--eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChH
Confidence 99988766 334455899999999999999999999999999999776422221 12122211112256667777764
Q ss_pred ce
Q 037120 316 KI 317 (489)
Q Consensus 316 ~i 317 (489)
..
T Consensus 163 e~ 164 (1416)
T KOG3617|consen 163 EK 164 (1416)
T ss_pred Hh
Confidence 44
No 321
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.60 E-value=0.046 Score=48.92 Aligned_cols=179 Identities=10% Similarity=0.083 Sum_probs=89.1
Q ss_pred ccCCCceeEEEECCCCc-EEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 93 SFGKPGISALDFDCKGI-YLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~-~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
......++.|+|+|+.. ++|+....+.|..++.+. +... ...+.+. .+.-.|++..++ .+
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-~vlr------------~i~l~g~----~D~EgI~y~g~~--~~ 78 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-KVLR------------RIPLDGF----GDYEGITYLGNG--RY 78 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEE------------EEE-SS-----SSEEEEEE-STT--EE
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-CEEE------------EEeCCCC----CCceeEEEECCC--EE
Confidence 33445699999999854 666666688887777653 2222 1112221 125568887665 44
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeec-CCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCC--CCcCc
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVG-SDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV--GVLPS 248 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~~~ 248 (489)
+...+.++.+.++++....... .......+...+ ..++..+-.++|.+.++ .|+.+-+..-..+|.++. .....
T Consensus 79 vl~~Er~~~L~~~~~~~~~~~~--~~~~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~~~~~~~ 155 (248)
T PF06977_consen 79 VLSEERDQRLYIFTIDDDTTSL--DRADVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGFPGGFDL 155 (248)
T ss_dssp EEEETTTTEEEEEEE----TT----EEEEEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEEESTT-SS--
T ss_pred EEEEcCCCcEEEEEEecccccc--chhhceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccccCccce
Confidence 4444434999999994332111 111111111111 24667899999999988 666666666666666553 11110
Q ss_pred -eee------ccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCccccee
Q 037120 249 -LEL------STGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPF 294 (489)
Q Consensus 249 -~~~------~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~ 294 (489)
... .......+.+++++|....++.-+. ...|-.+| .+|+.+..+
T Consensus 156 ~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~ 208 (248)
T PF06977_consen 156 FVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSL 208 (248)
T ss_dssp EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred eeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence 000 1123355789999997665555555 88999999 566654433
No 322
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.59 E-value=0.043 Score=49.22 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=64.1
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
.+++++.+ +.|..||...+ +.+-... +.+..... ... .+. .++.++.|+.|..+|..+++.. .
T Consensus 38 ~v~~~~~~-~~l~~~d~~tG-----~~~W~~~-----~~~~~~~~---~~~-~~~-~v~v~~~~~~l~~~d~~tG~~~-W 100 (238)
T PF13360_consen 38 RVYVASGD-GNLYALDAKTG-----KVLWRFD-----LPGPISGA---PVV-DGG-RVYVGTSDGSLYALDAKTGKVL-W 100 (238)
T ss_dssp EEEEEETT-SEEEEEETTTS-----EEEEEEE-----CSSCGGSG---EEE-ETT-EEEEEETTSEEEEEETTTSCEE-E
T ss_pred EEEEEcCC-CEEEEEECCCC-----CEEEEee-----ccccccce---eee-ccc-ccccccceeeeEecccCCccee-e
Confidence 45555555 99999998433 2221111 11110111 122 344 5666778889999999998743 2
Q ss_pred eeccCC---CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 250 ELSTGS---HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 250 ~~~~~h---~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
+..... ............+..++++..++.|..+|+++|+.+.....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 101 SIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp EEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred eeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 211111 01222334444588889998899999999999998666654
No 323
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.49 E-value=0.05 Score=54.17 Aligned_cols=113 Identities=12% Similarity=0.168 Sum_probs=78.2
Q ss_pred EEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 037120 161 VRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD 240 (489)
Q Consensus 161 v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd 240 (489)
-++...++ .++.|+.- |.+.+|+-..+. ...... .+-...+..+..+++.. +++.|+..|.|.++.
T Consensus 39 Tc~dst~~-~l~~GsS~-G~lyl~~R~~~~-----~~~~~~------~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~q 104 (726)
T KOG3621|consen 39 TCVDATEE-YLAMGSSA-GSVYLYNRHTGE-----MRKLKN------EGATGITCVRSVSSVEY-LVAAGTASGRVSVFQ 104 (726)
T ss_pred EEeecCCc-eEEEeccc-ceEEEEecCchh-----hhcccc------cCccceEEEEEecchhH-hhhhhcCCceEEeeh
Confidence 34444554 55555555 999999874321 111111 22334566677787777 899999999999998
Q ss_pred CCCCCcCceeec----cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 241 RRVGVLPSLELS----TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 241 ~~~~~~~~~~~~----~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
+.....+..... ..|...|++++|++++..+++|...|+|.+-.+..
T Consensus 105 l~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 105 LNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 887433322121 15788999999999999999999999999887776
No 324
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.49 E-value=3.8e-05 Score=74.32 Aligned_cols=162 Identities=17% Similarity=0.195 Sum_probs=101.1
Q ss_pred CceeEEEECCC-CcEEEEEec----CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 97 PGISALDFDCK-GIYLVSATR----SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 97 ~~V~~~~fs~~-g~~la~g~~----dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
...++++|++- .+.||+|-. |..+.|||+.+.-..+.+ .+....+...+..+++|..+.+ ++
T Consensus 103 r~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke------------~~~fs~~~l~gqns~cwlrd~k-lv 169 (783)
T KOG1008|consen 103 RPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKE------------SPLFSSSTLDGQNSVCWLRDTK-LV 169 (783)
T ss_pred ccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcc------------ccccccccccCccccccccCcc-hh
Confidence 34889999985 566777743 678999999985443322 1111111222366799986654 66
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEE-CCCCCcCcee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD-RRVGVLPSLE 250 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd-~~~~~~~~~~ 250 (489)
.+|... ..++++|++..... .. .-.+..+..+...|-..+++++-. ||.|-+|| .+.-+.+..
T Consensus 170 laGm~s-r~~~ifdlRqs~~~-------~~------svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~- 233 (783)
T KOG1008|consen 170 LAGMTS-RSVHIFDLRQSLDS-------VS------SVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQ- 233 (783)
T ss_pred hccccc-chhhhhhhhhhhhh-------hh------hhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHH-
Confidence 666655 89999999633211 11 113345666778885554777655 99999999 555444422
Q ss_pred eccCCC----CceeEEEEeecCCEEEEE-eC-CCeEEEEEcCC
Q 037120 251 LSTGSH----GTLNSIQLHAENQIIFAA-GK-HGSIYLWDLRG 287 (489)
Q Consensus 251 ~~~~h~----~~v~~~~~~p~~~~l~~~-~~-dg~i~lwd~~~ 287 (489)
.+...+ ..+..++|.|...-+++. .. .++|+++|++.
T Consensus 234 ~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 234 IILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred HHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 222112 358899999976544443 33 78999999874
No 325
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.0043 Score=62.23 Aligned_cols=145 Identities=10% Similarity=0.145 Sum_probs=90.4
Q ss_pred CCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC----CCCEEEEEecCCCE
Q 037120 105 DCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA----NQDEVACASTRSNV 180 (489)
Q Consensus 105 s~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~----~~~~l~s~~~d~g~ 180 (489)
+-+|.++|+|+.||+|.|..+.+...... ..- ..++.+++++|+ ....+++|+.. |
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~---------~df---------~rpiksial~Pd~~~~~sk~fv~GG~a-g- 139 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQ---------YDF---------KRPIKSIALHPDFSRQQSKQFVSGGMA-G- 139 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCcccee---------Eec---------CCcceeEEeccchhhhhhhheeecCcc-e-
Confidence 45799999999999999998876322221 000 112888999998 34578888866 6
Q ss_pred EEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc-CC----
Q 037120 181 VSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST-GS---- 255 (489)
Q Consensus 181 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~h---- 255 (489)
+.++.-+-..... .+ .+..-.++|.++.|. |. +++=++ |--|++||+.+.+ .+.... .+
T Consensus 140 lvL~er~wlgnk~-~v---------~l~~~eG~I~~i~W~--g~-lIAWan-d~Gv~vyd~~~~~--~l~~i~~p~~~~R 203 (846)
T KOG2066|consen 140 LVLSERNWLGNKD-SV---------VLSEGEGPIHSIKWR--GN-LIAWAN-DDGVKVYDTPTRQ--RLTNIPPPSQSVR 203 (846)
T ss_pred EEEehhhhhcCcc-ce---------eeecCccceEEEEec--Cc-EEEEec-CCCcEEEeccccc--eeeccCCCCCCCC
Confidence 7777653322221 11 123345699999996 55 555554 6679999998865 222222 11
Q ss_pred -CCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 256 -HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 256 -~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
+..-..+.|.++.+ |+.| ...+|+|..++.
T Consensus 204 ~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 204 PELFPPHLHWQDEDR-LVIG-WGDSVKICSIKK 234 (846)
T ss_pred cccCCCceEecCCCe-EEEe-cCCeEEEEEEec
Confidence 11233677876655 4444 444889988884
No 326
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.45 E-value=0.017 Score=51.13 Aligned_cols=101 Identities=19% Similarity=0.236 Sum_probs=62.1
Q ss_pred EEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeee--eceeeeeecCCcccCeeEEEEecCCCcEEEEEeC-----C
Q 037120 161 VRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLK--TRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT-----H 233 (489)
Q Consensus 161 v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~-----d 233 (489)
++|+|....-++-+-.-.-...++|....... .++. ..+.| .+|- .|+|||. +|+..-+ -
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~p--v~~~s~~~RHf----yGHG------vfs~dG~-~LYATEndfd~~r 139 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEP--VTLVSQEGRHF----YGHG------VFSPDGR-LLYATENDFDPNR 139 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCc--EEEecccCcee----eccc------ccCCCCc-EEEeecCCCCCCC
Confidence 77787766556655544234567887543222 1221 22222 3443 6899999 6665543 3
Q ss_pred CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEe
Q 037120 234 GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAG 275 (489)
Q Consensus 234 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~ 275 (489)
|.|-|||.+.+-. -+-.+..|.-.-..+.|.+||+.++.+.
T Consensus 140 GViGvYd~r~~fq-rvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 140 GVIGVYDAREGFQ-RVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ceEEEEecccccc-eecccccCCcCcceeEEecCCcEEEEeC
Confidence 7899999986422 2334456666667899999999988764
No 327
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.43 E-value=0.029 Score=59.17 Aligned_cols=231 Identities=12% Similarity=0.107 Sum_probs=129.6
Q ss_pred cCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCccc
Q 037120 212 KGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTS 291 (489)
Q Consensus 212 ~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~ 291 (489)
..|.++.|..+.. .++.+..+|.|.+-|..+....++. .-.+.|.+++|+||++.++..+.++++.+-+ .+...+
T Consensus 69 ~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et~~~eivg---~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i 143 (1265)
T KOG1920|consen 69 DEIVSVQFLADTN-SICVITALGDIILVDPETLELEIVG---NVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPI 143 (1265)
T ss_pred cceEEEEEecccc-eEEEEecCCcEEEEcccccceeeee---eccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccch
Confidence 5899999998888 7888888999999998886644443 3368899999999999999998888876543 222222
Q ss_pred ceeecCCcc-CCCCeeEEEeCCCCcce-ee------------ccc-cceeeccceeEEEeCCCCCeEEEEEecCCce-EE
Q 037120 292 APFHNHKEV-CHLPLTSLKLASMLEKI-GT------------LKA-QSKIVSQEIHSIDLDPSCSYQLAFHLDDGWS-GV 355 (489)
Q Consensus 292 ~~~~~~~~~-~~~~v~~l~~~~~~~~i-~~------------~~~-~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~-~~ 355 (489)
..-..+.+- ..+..-.+-|-.....+ ++ .+. ........-.+|.|.-||.++++......-. +-
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 111111000 00112333343322222 00 000 0000112234578888888887755433211 23
Q ss_pred EEeeccc--eeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEee--cCCCcEEEEeccCCCCCCeeeccCcccch
Q 037120 356 LDVYNSR--VSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGS--SSDHGIHLLDFFPGSSSPSHVDYNEDIES 431 (489)
Q Consensus 356 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg--s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 431 (489)
+.++... .+...-+ .. .....++|-|.|..+.+.. +.|+.|.++.-+.- +. ..
T Consensus 224 irV~drEg~Lns~se~-~~-----------~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL----------~h-g~ 280 (1265)
T KOG1920|consen 224 IRVYDREGALNSTSEP-VE-----------GLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL----------RH-GE 280 (1265)
T ss_pred EEEecccchhhcccCc-cc-----------ccccceeecCCCCeEeeeeecCCCCcEEEEecCCc----------cc-cc
Confidence 3333221 2211111 01 1123478888877766653 34557888875533 10 01
Q ss_pred hhHhhhhcccCCcccC-CCceEEEEeeCCCCeEEe---ccCcceeEEEeccc
Q 037120 432 LSERTKLKKENRFVPL-SEGVTACVTHPLNNTIVA---GTKNSSLLVVSQKQ 479 (489)
Q Consensus 432 ~~~~~~~~~~~~~~~h-~~~V~~va~~p~~~~i~s---gs~dg~i~v~~~~~ 479 (489)
+.. + .+. ..+|..++|+.++..+|. ..+...|.||..++
T Consensus 281 f~l--------~-~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 281 FVL--------P-FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ccc--------C-CcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 100 0 022 234999999999998887 77777799986553
No 328
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.40 E-value=0.0058 Score=59.50 Aligned_cols=73 Identities=21% Similarity=0.229 Sum_probs=49.5
Q ss_pred CeeEEEEecCCCcEEEEEe-C--C-CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CCe--EEEEEc
Q 037120 213 GLSDLAFSAVNTSRLIASD-T--H-GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGS--IYLWDL 285 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s-~--d-g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~--i~lwd~ 285 (489)
.+..-+|+|++. .++..+ . . ..+.++|+.++..+.+-.+.++ -..-+|+|||+.|+.... ||. |+++|+
T Consensus 194 ~~~~p~ws~~~~-~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~---~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 194 LILTPAWSPDGK-KLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN---NGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred ceeccccCcCCC-ceEEEEEecCCCceEEEEeccCCccceeeccCCc---cCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 566678999998 444332 2 2 3599999999876644333333 345689999998887766 665 666677
Q ss_pred CCCc
Q 037120 286 RGGR 289 (489)
Q Consensus 286 ~~~~ 289 (489)
.+..
T Consensus 270 ~~~~ 273 (425)
T COG0823 270 DGKN 273 (425)
T ss_pred CCCc
Confidence 7655
No 329
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.33 E-value=0.0053 Score=59.74 Aligned_cols=184 Identities=15% Similarity=0.025 Sum_probs=104.2
Q ss_pred CceeEEEECCCCcEEEEEec---C-CeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 97 PGISALDFDCKGIYLVSATR---S-GCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~---d-g~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
..+..-+|+|++..++-.+. . ..+.++++++...... ..+.++.. .-+|+|++..+++
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i------------~~~~g~~~------~P~fspDG~~l~f 254 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI------------LNFNGNNG------APAFSPDGSKLAF 254 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee------------eccCCccC------CccCCCCCCEEEE
Confidence 34777789999988776543 2 3588888887433321 11222222 2789999998888
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCc--EEEEECCCCCcCcee
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGV--VNIWDRRVGVLPSLE 250 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~ 250 (489)
+...| |...||=+........+ +.. ..+ .-..=.|+|+|+.++++.+..|. |.++|...... +
T Consensus 255 ~~~rd-g~~~iy~~dl~~~~~~~-Lt~-------~~g---i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~ 319 (425)
T COG0823 255 SSSRD-GSPDIYLMDLDGKNLPR-LTN-------GFG---INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---T 319 (425)
T ss_pred EECCC-CCccEEEEcCCCCccee-ccc-------CCc---cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---e
Confidence 88877 76666544322222111 111 122 12255799999966666666665 45556555432 1
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeC-CCe--EEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGK-HGS--IYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~--i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
........-..-.|+|+|++++..+. +|. |.+.|+.++.....+.. ... ...-.|.+++..+.
T Consensus 320 riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~-~~~----~e~ps~~~ng~~i~ 385 (425)
T COG0823 320 RLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS-TYL----NESPSWAPNGRMIM 385 (425)
T ss_pred EeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc-ccc----CCCCCcCCCCceEE
Confidence 22222222226789999999888875 454 66677766553333322 111 33445666665553
No 330
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.002 Score=60.13 Aligned_cols=144 Identities=14% Similarity=0.049 Sum_probs=88.5
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC-CCcE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT-HGVV 236 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~-dg~i 236 (489)
|+.+.-.. ..++.+++.| |.++.|--... .... ++.-+..|...|.+++.+-++- ++.|.+. |..+
T Consensus 12 i~hv~~tk--a~fiiqASlD-Gh~KFWkKs~i-----sGvE----fVKhFraHL~~I~sl~~S~dg~-L~~Sv~d~Dhs~ 78 (558)
T KOG0882|consen 12 ITHVFPTK--AKFIIQASLD-GHKKFWKKSRI-----SGVE----FVKHFRAHLGVILSLAVSYDGW-LFRSVEDPDHSV 78 (558)
T ss_pred eeeEeeeh--hheEEeeecc-hhhhhcCCCCc-----ccee----ehhhhHHHHHHHHhhhccccce-eEeeccCcccce
Confidence 55554433 3589999999 99999986211 1111 2222366888999999999998 8888777 9999
Q ss_pred EEEECCCCCcC-ceeeccCCCCceeEEEEeecC-C-EEEEEe-CCCeEEEEEcCCCcc-ccee-ecCCccCCCCeeEEEe
Q 037120 237 NIWDRRVGVLP-SLELSTGSHGTLNSIQLHAEN-Q-IIFAAG-KHGSIYLWDLRGGRT-SAPF-HNHKEVCHLPLTSLKL 310 (489)
Q Consensus 237 ~iwd~~~~~~~-~~~~~~~h~~~v~~~~~~p~~-~-~l~~~~-~dg~i~lwd~~~~~~-~~~~-~~~~~~~~~~v~~l~~ 310 (489)
+++|+..-... .++. ..-.+.+.. ..+|.. . .++++. .+|.|.++|-+...+ ...+ .-|. +||..+.+
T Consensus 79 KvfDvEn~DminmiKL-~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~----sPV~~i~y 152 (558)
T KOG0882|consen 79 KVFDVENFDMINMIKL-VDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHF----SPVKKIRY 152 (558)
T ss_pred eEEEeeccchhhhccc-ccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccccc----CceEEEEe
Confidence 99999876533 1111 111122221 112221 1 233333 389999999887654 2222 2444 45999988
Q ss_pred CCCCcceeec
Q 037120 311 ASMLEKIGTL 320 (489)
Q Consensus 311 ~~~~~~i~~~ 320 (489)
.+.+..+.+.
T Consensus 153 ~qa~Ds~vSi 162 (558)
T KOG0882|consen 153 NQAGDSAVSI 162 (558)
T ss_pred eccccceeec
Confidence 8887766553
No 331
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.26 E-value=0.15 Score=48.96 Aligned_cols=213 Identities=14% Similarity=0.095 Sum_probs=100.0
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCC---
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGS--- 255 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h--- 255 (489)
+.+.|||+... .+.+.. .....+....|+|+|+ .++... ++.|.+++..++....+. ..+-
T Consensus 23 ~~y~i~d~~~~------~~~~l~-------~~~~~~~~~~~sP~g~-~~~~v~-~~nly~~~~~~~~~~~lT-~dg~~~i 86 (353)
T PF00930_consen 23 GDYYIYDIETG------EITPLT-------PPPPKLQDAKWSPDGK-YIAFVR-DNNLYLRDLATGQETQLT-TDGEPGI 86 (353)
T ss_dssp EEEEEEETTTT------EEEESS--------EETTBSEEEE-SSST-EEEEEE-TTEEEEESSTTSEEEESE-S--TTTE
T ss_pred eeEEEEecCCC------ceEECc-------CCccccccceeecCCC-eeEEEe-cCceEEEECCCCCeEEec-cccceeE
Confidence 67889999432 111111 1135788899999998 766665 689999998776322121 1110
Q ss_pred -------------CCceeEEEEeecCCEEEEEeC-CCeEEEEEcC---CC-c---ccceeecCCccCCCCeeEEE-eCCC
Q 037120 256 -------------HGTLNSIQLHAENQIIFAAGK-HGSIYLWDLR---GG-R---TSAPFHNHKEVCHLPLTSLK-LASM 313 (489)
Q Consensus 256 -------------~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~---~~-~---~~~~~~~~~~~~~~~v~~l~-~~~~ 313 (489)
-+.-..+-|+||+++|+.... +..|+.+.+- .. . .+..+.-.......|...|. ++-.
T Consensus 87 ~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~ 166 (353)
T PF00930_consen 87 YNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLA 166 (353)
T ss_dssp EESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESS
T ss_pred EcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECC
Confidence 012357889999999888865 5555544432 21 1 12222210000001122221 2222
Q ss_pred Ccceeeccc--cceeeccceeEEEeCCCCCeEEEEEecCC--c--eEEEEeeccceeee-cCCCCCCcCCCCccccccCC
Q 037120 314 LEKIGTLKA--QSKIVSQEIHSIDLDPSCSYQLAFHLDDG--W--SGVLDVYNSRVSHV-HCPPPAWLSDSNNSADQLHL 386 (489)
Q Consensus 314 ~~~i~~~~~--~~~~~~~~i~~~~~~p~~~~~~~~~~~~~--w--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 386 (489)
+..+..+.. .......-+..+.+.+++..+++...+.. . ...++...+....+ ......|....
T Consensus 167 ~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~--------- 237 (353)
T PF00930_consen 167 SGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY--------- 237 (353)
T ss_dssp STCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS---------
T ss_pred CCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee---------
Confidence 222211110 01122345678888888874444433333 1 23334433332221 11222444321
Q ss_pred Ccceee-cCCcEEEEeecCCC--cEEEEeccCC
Q 037120 387 RKPSWL-STNSIYAVGSSSDH--GIHLLDFFPG 416 (489)
Q Consensus 387 ~~~~~~-~~~~~~l~sgs~d~--~i~vwd~~~~ 416 (489)
....+. +++..++.....|| .|++.+...+
T Consensus 238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~ 270 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG 270 (353)
T ss_dssp SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS
T ss_pred cccccccCCCCEEEEEEEcCCCcEEEEEccccc
Confidence 123333 66777777767777 5556665555
No 332
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.22 E-value=0.00064 Score=40.49 Aligned_cols=36 Identities=28% Similarity=0.614 Sum_probs=31.3
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEE
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWD 284 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd 284 (489)
...+..|...|.++.|++.+..+++++.|+.+++||
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 334557888999999999999999999999999996
No 333
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=0.0013 Score=66.50 Aligned_cols=67 Identities=10% Similarity=0.135 Sum_probs=58.6
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
.++.+..|....+|++|+-..++|+.|+..|.|++|++.+|.......+|+.+ |+-+.=+.+|....
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~Sa----vT~vePs~dgs~~L 1159 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSA----VTLVEPSVDGSTQL 1159 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccc----cccccccCCcceee
Confidence 34556678889999999999999999999999999999999988888899877 99998888887663
No 334
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.19 E-value=0.04 Score=55.15 Aligned_cols=74 Identities=8% Similarity=-0.067 Sum_probs=50.6
Q ss_pred CeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC----------ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEE
Q 037120 213 GLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP----------SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYL 282 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----------~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~l 282 (489)
....+.++|||+..++++..+.+|.|.|+.+.+.. ......- .-.-...+|+++|....+-.-|..|..
T Consensus 322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~k 400 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVK 400 (635)
T ss_pred CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEE
Confidence 56779999999966666668999999999875420 1111111 122235788999874444455999999
Q ss_pred EEcCC
Q 037120 283 WDLRG 287 (489)
Q Consensus 283 wd~~~ 287 (489)
||+.+
T Consensus 401 wn~~~ 405 (635)
T PRK02888 401 WNIEA 405 (635)
T ss_pred EehHH
Confidence 99876
No 335
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.12 E-value=0.0053 Score=60.73 Aligned_cols=120 Identities=12% Similarity=0.076 Sum_probs=81.3
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
|.=-+++..+++++.|+.-|.+.+|+-..+...... . .+-.. .+.....+++. ++++.|+..
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~-------~------~~~~~---~~~~~~vs~~e-~lvAagt~~- 97 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK-------N------EGATG---ITCVRSVSSVE-YLVAAGTAS- 97 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhccc-------c------cCccc---eEEEEEecchh-HhhhhhcCC-
Confidence 444456778899999999999999988774333211 0 00011 14445566664 577777766
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV 243 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 243 (489)
|.|.++-+......+...+.+.. ..|...|++++|++++. .+++|...|.|.+--+.+
T Consensus 98 g~V~v~ql~~~~p~~~~~~t~~d------~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 98 GRVSVFQLNKELPRDLDYVTPCD------KSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceEEeehhhccCCCcceeecccc------ccCCceEEEEEeccccc-EEeecCCCceEEEEEech
Confidence 99999998653222212222222 34889999999999999 999999999998877665
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.07 E-value=0.073 Score=52.17 Aligned_cols=140 Identities=13% Similarity=0.147 Sum_probs=75.7
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
....+.++|+|+++++ +.||.-.|+.....+... .+. -..++|.+.+ .++.-...
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-------------------~G~---g~~~vw~~~n--~yAv~~~~ 88 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-------------------FGS---GLSFVWSSRN--RYAVLESS 88 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-------------------EEE----SEEEE-TSS--EEEEE-TT
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-------------------cCc---eeEEEEecCc--cEEEEECC
Confidence 3678999999999988 557888888744311111 111 3448899854 56666555
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCC
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHG 257 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~ 257 (489)
++|.|+.--.. .....+.. . ..+..|-. |. +|+..+ ++.|.+||+.+++ .+..+. -.
T Consensus 89 -~~I~I~kn~~~--~~~k~i~~--------~---~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~--~i~~i~--v~ 145 (443)
T PF04053_consen 89 -STIKIYKNFKN--EVVKSIKL--------P---FSVEKIFG---GN-LLGVKS-SDFICFYDWETGK--LIRRID--VS 145 (443)
T ss_dssp -S-EEEEETTEE---TT-------------S---S-EEEEE----SS-SEEEEE-TTEEEEE-TTT----EEEEES--S-
T ss_pred -CeEEEEEcCcc--ccceEEcC--------C---cccceEEc---Cc-EEEEEC-CCCEEEEEhhHcc--eeeEEe--cC
Confidence 89999733111 11011111 1 12334422 66 666555 4489999999876 565554 23
Q ss_pred ceeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 037120 258 TLNSIQLHAENQIIFAAGKHGSIYLWDLR 286 (489)
Q Consensus 258 ~v~~~~~~p~~~~l~~~~~dg~i~lwd~~ 286 (489)
.|..+.|++++.+++..+.+ .+.+++..
T Consensus 146 ~vk~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 146 AVKYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred CCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 48999999999998888765 67777654
No 337
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.03 E-value=0.0013 Score=39.13 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=29.0
Q ss_pred CCcccCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 037120 208 SDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD 240 (489)
Q Consensus 208 ~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd 240 (489)
..|...|.++.|++.+. .+++++.|+.+++||
T Consensus 9 ~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 56778999999999887 999999999999996
No 338
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.02 E-value=0.047 Score=52.71 Aligned_cols=182 Identities=10% Similarity=0.065 Sum_probs=92.3
Q ss_pred CCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeC---CC----C
Q 037120 96 KPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNL---AN----Q 168 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~---~~----~ 168 (489)
...|++++.|.-| ++|.|..+|.+.|.|+.....+... ....+ .........|+++.|.- .+ .
T Consensus 86 ~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~------~i~~~---~~~~~~~~~vt~ieF~vm~~~~D~ySS 155 (395)
T PF08596_consen 86 QGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNE------NIRES---FLSKSSSSYVTSIEFSVMTLGGDGYSS 155 (395)
T ss_dssp S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEE------EGGG-----T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred CCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeec------ccccc---ccccccccCeeEEEEEEEecCCCcccc
Confidence 4559999998777 8999999999999999775444321 01110 01111112288888862 11 2
Q ss_pred CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEe-cCC--------------------CcEE
Q 037120 169 DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFS-AVN--------------------TSRL 227 (489)
Q Consensus 169 ~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~--------------------~~~l 227 (489)
-++++|... |.+.+|.+.-.... ......... ...+.+.|..|... .+. +.++
T Consensus 156 i~L~vGTn~-G~v~~fkIlp~~~g-~f~v~~~~~----~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~v 229 (395)
T PF08596_consen 156 ICLLVGTNS-GNVLTFKILPSSNG-RFSVQFAGA----TTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYV 229 (395)
T ss_dssp EEEEEEETT-SEEEEEEEEE-GGG--EEEEEEEE----E--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEE
T ss_pred eEEEEEeCC-CCEEEEEEecCCCC-ceEEEEeec----cccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEE
Confidence 356667766 99999998421111 111111111 12355666666532 211 1244
Q ss_pred EEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEe-----ecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 228 IASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLH-----AENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 228 ~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-----p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
+.++ +..++++..-+.+.. .+.+ ...-....+.+- ..+..|++-..+|.|++|.+...+.+..+..
T Consensus 230 VvvS-e~~irv~~~~~~k~~-~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 230 VVVS-ESDIRVFKPPKSKGA-HKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp EEE--SSEEEEE-TT---EE-EEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred EEEc-ccceEEEeCCCCccc-ceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence 4444 788999988775522 2222 111223334442 3455666667899999999998877666554
No 339
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.00 E-value=0.071 Score=40.50 Aligned_cols=101 Identities=13% Similarity=0.198 Sum_probs=65.3
Q ss_pred eeEEEe---eCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC
Q 037120 158 LDAVRW---NLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG 234 (489)
Q Consensus 158 V~~v~~---~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg 234 (489)
|+++++ ..++...|+.|+.| ..|++|+-. ..+.... -+..|+++.-... . .|+.+-.+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D-~~IRvf~~~-------e~~~Ei~--------e~~~v~~L~~~~~-~-~F~Y~l~NG 63 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDD-FEIRVFKGD-------EIVAEIT--------ETDKVTSLCSLGG-G-RFAYALANG 63 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCC-cEEEEEeCC-------cEEEEEe--------cccceEEEEEcCC-C-EEEEEecCC
Confidence 445554 55677889999988 999999862 2222222 2347777776654 3 799999999
Q ss_pred cEEEEECCCCCcCceeeccCCCCceeEEEEeecC----CEEEEEeCCCeEE
Q 037120 235 VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAEN----QIIFAAGKHGSIY 281 (489)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~----~~l~~~~~dg~i~ 281 (489)
+|-+|+-... .++... +..+.++++..-+ +-|++|-.+|.|-
T Consensus 64 TVGvY~~~~R---lWRiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 64 TVGVYDRSQR---LWRIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEEeCcce---eeeecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9999986543 343433 3346666654322 2577777788764
No 340
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.99 E-value=0.32 Score=46.00 Aligned_cols=172 Identities=12% Similarity=0.090 Sum_probs=73.1
Q ss_pred cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCC-----eEEEEEcCC-CcccceeecCCccCCCCeeEE
Q 037120 235 VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHG-----SIYLWDLRG-GRTSAPFHNHKEVCHLPLTSL 308 (489)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg-----~i~lwd~~~-~~~~~~~~~~~~~~~~~v~~l 308 (489)
.|.-.|+.+++...+ ..-...+.-+.|+|....++.=|..| .-|||-+++ +.....+..+... ..+..=
T Consensus 169 ~i~~idl~tG~~~~v---~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~--e~~gHE 243 (386)
T PF14583_consen 169 RIFTIDLKTGERKVV---FEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEG--ESVGHE 243 (386)
T ss_dssp EEEEEETTT--EEEE---EEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TT--EEEEEE
T ss_pred eEEEEECCCCceeEE---EecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCC--cccccc
Confidence 455667877763322 22346678899999888777765533 237776665 2223333322211 125566
Q ss_pred EeCCCCcceee--------------c--ccc---ceeeccceeEEEeCCCCCeEEEEEecCC---------------ceE
Q 037120 309 KLASMLEKIGT--------------L--KAQ---SKIVSQEIHSIDLDPSCSYQLAFHLDDG---------------WSG 354 (489)
Q Consensus 309 ~~~~~~~~i~~--------------~--~~~---~~~~~~~i~~~~~~p~~~~~~~~~~~~~---------------w~~ 354 (489)
-|.|||..+.- . .+. ..........+..++++..++.=+.+.. |..
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~ 323 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY 323 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence 78888877621 0 000 0011123344556677776654443321 222
Q ss_pred EEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEec
Q 037120 355 VLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDF 413 (489)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~ 413 (489)
+++...+....+......|.... .-.+.....++|+|++..+|.+....|...||=+
T Consensus 324 ~~~~~~~~~~~l~~h~~sw~v~~--~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 324 LFDVEAGRFRKLARHDTSWKVLD--GDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEETTTTEEEEEEE-------BT--TBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred EeccccCceeeeeeccCcceeec--CCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 23332322222211111232110 0011234679999999999999888886666543
No 341
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.95 E-value=0.22 Score=44.61 Aligned_cols=116 Identities=9% Similarity=0.152 Sum_probs=68.8
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
+..++|+|+...+++..... +.|..++.. ..++.... +.+ ....-.|++..++. ++++.-.++.+.
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~-~~i~els~~------G~vlr~i~-----l~g-~~D~EgI~y~g~~~-~vl~~Er~~~L~ 89 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEP-GEIYELSLD------GKVLRRIP-----LDG-FGDYEGITYLGNGR-YVLSEERDQRLY 89 (248)
T ss_dssp EEEEEEETTTTEEEEEETTT-TEEEEEETT--------EEEEEE------SS--SSEEEEEE-STTE-EEEEETTTTEEE
T ss_pred ccccEEcCCCCeEEEEECCC-CEEEEEcCC------CCEEEEEe-----CCC-CCCceeEEEECCCE-EEEEEcCCCcEE
Confidence 88899999876566666655 888777761 23443322 133 34678888876665 555555689999
Q ss_pred EEECCCCCcC----ceeec-----cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 238 IWDRRVGVLP----SLELS-----TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 238 iwd~~~~~~~----~~~~~-----~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
++++...... ..+.+ ..++..+-.++|+|.++.++++-...-..||.++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 9988443211 11111 13556789999999988888886655556666553
No 342
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0044 Score=60.48 Aligned_cols=93 Identities=11% Similarity=0.092 Sum_probs=69.4
Q ss_pred CeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCcee-EEEEeecCCEEEEEeCCCeEEEEEcCCCccc
Q 037120 213 GLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLN-SIQLHAENQIIFAAGKHGSIYLWDLRGGRTS 291 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~ 291 (489)
.|.-+.|+|.-. ++|.+..+|.|.+.-+.-.+ .+ .+.-|...++ +++|.|||+.+++|-.||+|++-|+.++..+
T Consensus 22 ~i~~~ewnP~~d-LiA~~t~~gelli~R~n~qR--lw-tip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 22 NIKRIEWNPKMD-LIATRTEKGELLIHRLNWQR--LW-TIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ceEEEEEcCccc-hhheeccCCcEEEEEeccce--eE-eccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 677789999988 99999999988887766322 33 2333444555 9999999999999999999999999998876
Q ss_pred ceeecCCccCCCCeeEEEeCC
Q 037120 292 APFHNHKEVCHLPLTSLKLAS 312 (489)
Q Consensus 292 ~~~~~~~~~~~~~v~~l~~~~ 312 (489)
..+.... ..+|.++-|.+
T Consensus 98 ~~~~~s~---e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSV---ETDISKGIWDR 115 (665)
T ss_pred ecccccc---ccchheeeccc
Confidence 6532111 12377777764
No 343
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.87 E-value=0.28 Score=43.07 Aligned_cols=117 Identities=12% Similarity=0.018 Sum_probs=75.6
Q ss_pred EEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 037120 161 VRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD 240 (489)
Q Consensus 161 v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd 240 (489)
+..-++.+.+++.|+.. +.+.--|...++-. .... +. ..|.+-+.- -|+ +++.|...|.+++.+
T Consensus 16 LVV~~dskT~v~igSHs-~~~~avd~~sG~~~----We~i------lg---~RiE~sa~v-vgd-fVV~GCy~g~lYfl~ 79 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHS-GIVIAVDPQSGNLI----WEAI------LG---VRIECSAIV-VGD-FVVLGCYSGGLYFLC 79 (354)
T ss_pred EEEecCCceEEEEecCC-ceEEEecCCCCcEE----eehh------hC---ceeeeeeEE-ECC-EEEEEEccCcEEEEE
Confidence 44455556688888877 77777777333211 0000 01 123322222 355 789999999999999
Q ss_pred CCCCCcCceeeccCCCCcee-EEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 241 RRVGVLPSLELSTGSHGTLN-SIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
.+++++. .+... .+.|. .....+++..+..|+.|++.+..|.++..++...+.
T Consensus 80 ~~tGs~~-w~f~~--~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 80 VKTGSQI-WNFVI--LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred ecchhhe-eeeee--hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 9998632 22221 22232 345678999999999999999999999887777654
No 344
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.85 E-value=0.38 Score=44.27 Aligned_cols=159 Identities=17% Similarity=0.159 Sum_probs=85.9
Q ss_pred CCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEE
Q 037120 105 DCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIY 184 (489)
Q Consensus 105 s~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vw 184 (489)
...++.|+.|+.+| +.+++........ . ..+... |..+...|.-. +++.-+ |+.+.++
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~---------~------i~~~~~---I~ql~vl~~~~-~llvLs--d~~l~~~ 61 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPT---------R------ILKLSS---ITQLSVLPELN-LLLVLS--DGQLYVY 61 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccce---------e------Eeecce---EEEEEEecccC-EEEEEc--CCccEEE
Confidence 34678999999999 8999883211000 0 112222 77888888754 566666 5999999
Q ss_pred EeccCCCCCcee--eeeceeeeeecCCcccCeeEEE--EecCCCcEEEEEeCCCcEEEEECCCC--Cc-CceeeccCCCC
Q 037120 185 DIGYISDEPVEV--LKTRRSVTVVGSDVQKGLSDLA--FSAVNTSRLIASDTHGVVNIWDRRVG--VL-PSLELSTGSHG 257 (489)
Q Consensus 185 d~~~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~l~s~s~dg~i~iwd~~~~--~~-~~~~~~~~h~~ 257 (489)
++.......... .................+...+ -...+. ..+.......|.+|..... +. ...+.+ .-..
T Consensus 62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~-~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~ 139 (275)
T PF00780_consen 62 DLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGS-RRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPD 139 (275)
T ss_pred EchhhccccccccccccccccccccccccCCeeEEeeccccccc-eEEEEEECCEEEEEEEECCcccccceeEEE-EcCC
Confidence 996432221000 0000000000011223344443 112333 4444554668988887763 21 122222 2347
Q ss_pred ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc
Q 037120 258 TLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT 290 (489)
Q Consensus 258 ~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~ 290 (489)
.+.+++|. ++.++.|..+ ...+.|+.++..
T Consensus 140 ~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~ 169 (275)
T PF00780_consen 140 PPSSIAFL--GNKICVGTSK-GFYLIDLNTGSP 169 (275)
T ss_pred CcEEEEEe--CCEEEEEeCC-ceEEEecCCCCc
Confidence 78899998 5666666544 478899997654
No 345
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.73 E-value=0.55 Score=45.92 Aligned_cols=92 Identities=12% Similarity=0.092 Sum_probs=60.2
Q ss_pred EEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecC
Q 037120 218 AFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNH 297 (489)
Q Consensus 218 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 297 (489)
.+..+.. ..+....++.+.+.+-...+ . . ...+++..+++||++++++.-..+|.+.+....-.+.+..+...
T Consensus 185 ~l~~~~~-~~i~~~~g~~i~~i~~~~~~--~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~ 257 (410)
T PF04841_consen 185 LLSSDRV-VEILLANGETIYIIDENSFK--Q---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD 257 (410)
T ss_pred EeecCcc-eEEEEecCCEEEEEEccccc--c---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence 3444555 55555556677755543321 1 1 12468999999999999988888999999887655555555543
Q ss_pred CccCCCCeeEEEeCCCCcceee
Q 037120 298 KEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 298 ~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
.. .+...+.|+.+...+..
T Consensus 258 ~~---~~p~~~~WCG~dav~l~ 276 (410)
T PF04841_consen 258 SK---SPPKQMAWCGNDAVVLS 276 (410)
T ss_pred cC---CCCcEEEEECCCcEEEE
Confidence 11 23678999988765544
No 346
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.73 E-value=0.34 Score=44.97 Aligned_cols=160 Identities=11% Similarity=0.099 Sum_probs=76.5
Q ss_pred EEEECCCCcEEEEEe----------cCCeEEEEeCCCcccccCCCCCCCCCccccc-ccccCCCCCCceeEEEeeCCCCC
Q 037120 101 ALDFDCKGIYLVSAT----------RSGCLTVHDFESLYYQCNGTLPGVGLKEDQS-KHLLHIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 101 ~~~fs~~g~~la~g~----------~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~-~~~~h~~~~~~V~~v~~~~~~~~ 169 (489)
.+..+|+|+.+.+++ .+-.|.+||..+....... ..+.. ... .... ...++++.+++.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI-------~iP~k~R~~-~~~~---~~~~~ls~dgk~ 108 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEI-------EIPPKPRAQ-VVPY---KNMFALSADGKF 108 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEE-------EETTS-B---BS-----GGGEEE-TTSSE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceE-------ecCCcchhe-eccc---ccceEEccCCcE
Confidence 356789999888754 3457999999996544421 01100 000 0001 122455666554
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
+++.--.=-.+|.|-|+ ...+.+..... . . |....|.++.-|.+-+.||.+.-..+....++..
T Consensus 109 ~~V~N~TPa~SVtVVDl-----~~~kvv~ei~~-----P----G--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 109 LYVQNFTPATSVTVVDL-----AAKKVVGEIDT-----P----G--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp EEEEEESSSEEEEEEET-----TTTEEEEEEEG-----T----S--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred EEEEccCCCCeEEEEEC-----CCCceeeeecC-----C----C--EEEEEecCCCceEEEecCCceEEEEECCCCCEeE
Confidence 44432221245666666 22233332221 1 2 2223455554788888899999988885433211
Q ss_pred e---eccCCCCce-eEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 250 E---LSTGSHGTL-NSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 250 ~---~~~~h~~~v-~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
+ .+..-..++ ..-++...+..++-.+.+|.|+--|+..
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg 214 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSG 214 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETT
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccC
Confidence 1 111111222 2333333444444456677777666654
No 347
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.70 E-value=0.02 Score=57.17 Aligned_cols=116 Identities=15% Similarity=0.115 Sum_probs=68.3
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
...++++||++++++++..+ ++|.|.|+......-...+.+......+..- ...-...+|.++|. .+.|-.-|..|.
T Consensus 323 PHGV~vSPDGkylyVanklS-~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~-aytslf~dsqv~ 399 (635)
T PRK02888 323 PHGVNTSPDGKYFIANGKLS-PTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIV 399 (635)
T ss_pred ccceEECCCCCEEEEeCCCC-CcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCC-EEEeEeecceeE
Confidence 33499999999888887777 9999999965322100111111111111110 11234568888887 888888999999
Q ss_pred EEECCC------CCc--Cceeecc-----CCCCceeEEEEeecCCEEEEEeC
Q 037120 238 IWDRRV------GVL--PSLELST-----GSHGTLNSIQLHAENQIIFAAGK 276 (489)
Q Consensus 238 iwd~~~------~~~--~~~~~~~-----~h~~~v~~~~~~p~~~~l~~~~~ 276 (489)
.||+.. ++. +.+..+. +|......=.-.|+|++|++...
T Consensus 400 kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 400 KWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred EEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 999876 111 1332222 44332222334678888888754
No 348
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.70 E-value=0.076 Score=40.35 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=58.3
Q ss_pred EECCCC-cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEE
Q 037120 103 DFDCKG-IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVV 181 (489)
Q Consensus 103 ~fs~~g-~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i 181 (489)
.|+-+| +.|++||.|..|+||+-+.......+ ...|++++-... ..++.+..+ |+|
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e--------------------~~~v~~L~~~~~--~~F~Y~l~N-GTV 65 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGDEIVAEITE--------------------TDKVTSLCSLGG--GRFAYALAN-GTV 65 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCCcEEEEEec--------------------ccceEEEEEcCC--CEEEEEecC-CEE
Confidence 344444 67999999999999987762221111 111777776665 367777777 999
Q ss_pred EEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec---CCCcEEEEEeCCCcEE
Q 037120 182 SIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA---VNTSRLIASDTHGVVN 237 (489)
Q Consensus 182 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~l~s~s~dg~i~ 237 (489)
-+|+-.. ....... ...+.++++.. +|...|++|-.+|.|-
T Consensus 66 GvY~~~~------RlWRiKS---------K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 66 GVYDRSQ------RLWRIKS---------KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEeCcc------eeeeecc---------CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9998721 2221111 12355555443 3444688887788764
No 349
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.66 E-value=0.085 Score=54.86 Aligned_cols=86 Identities=13% Similarity=0.152 Sum_probs=58.8
Q ss_pred EEEEEeCCCcEEEEECCCCCcCceeec---cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccC
Q 037120 226 RLIASDTHGVVNIWDRRVGVLPSLELS---TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVC 301 (489)
Q Consensus 226 ~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~ 301 (489)
..+.|-.++.+..||.|.....++... .......+|++-..+| +|++|+.+|.|||||- .|+. ...|++..
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG--- 618 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLG--- 618 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCC---
Confidence 345566789999999997543233111 1234567788888777 4689999999999994 4433 34444444
Q ss_pred CCCeeEEEeCCCCcce
Q 037120 302 HLPLTSLKLASMLEKI 317 (489)
Q Consensus 302 ~~~v~~l~~~~~~~~i 317 (489)
.||..|..+.||+.+
T Consensus 619 -~pI~~iDvt~DGkwi 633 (794)
T PF08553_consen 619 -DPIIGIDVTADGKWI 633 (794)
T ss_pred -CCeeEEEecCCCcEE
Confidence 349999999999876
No 350
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.051 Score=57.08 Aligned_cols=159 Identities=7% Similarity=-0.002 Sum_probs=97.2
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|..+..++|.....+..+.++-.|..||++...........+.. ...+.........++.|+|.-....+.+..|+.|+
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~-~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLK-NSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccc-cccchhccccccccccccCCccchhhhhccccchh
Confidence 44555667765555555544358999999754332211111111 11111223345667889998876778888999999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
+.-+......+-. ..-....+|++|+|.|..+++|-..|++.-|... ++....+.+.....+..|.+|.|-.....+
T Consensus 182 V~~~~~~~~~v~s--~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTS--FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhcc--cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 9877654322221 1335678999999999999999999999988754 333333332111112448999998877766
Q ss_pred eec
Q 037120 318 GTL 320 (489)
Q Consensus 318 ~~~ 320 (489)
+.+
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 543
No 351
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.57 E-value=0.85 Score=44.54 Aligned_cols=151 Identities=11% Similarity=0.033 Sum_probs=75.7
Q ss_pred CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEec
Q 037120 108 GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIG 187 (489)
Q Consensus 108 g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~ 187 (489)
+..+..++.+|.+..+|.++++..=.. . ..+.. ..+.... + ..++.+..+ +.|.-+|..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~--------~----~~~~~-----~ssP~v~-~--~~v~v~~~~-g~l~ald~~ 178 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQT--------K----VAGEA-----LSRPVVS-D--GLVLVHTSN-GMLQALNES 178 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccc--------c----CCCce-----ecCCEEE-C--CEEEEECCC-CEEEEEEcc
Confidence 456777888999999999885543321 0 00000 0001111 2 244445555 889988885
Q ss_pred cCCCCCceeeeece-eeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC---C---cee
Q 037120 188 YISDEPVEVLKTRR-SVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH---G---TLN 260 (489)
Q Consensus 188 ~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~---~---~v~ 260 (489)
.+.. ...... .......+...++ . .+. .++.++.+|.+..+|..+++.. .+...... . ...
T Consensus 179 tG~~----~W~~~~~~~~~~~~~~~sP~----v--~~~-~v~~~~~~g~v~a~d~~~G~~~-W~~~~~~~~~~~~~~~~~ 246 (394)
T PRK11138 179 DGAV----KWTVNLDVPSLTLRGESAPA----T--AFG-GAIVGGDNGRVSAVLMEQGQLI-WQQRISQPTGATEIDRLV 246 (394)
T ss_pred CCCE----eeeecCCCCcccccCCCCCE----E--ECC-EEEEEcCCCEEEEEEccCChhh-heeccccCCCccchhccc
Confidence 4421 111000 0000000111111 1 123 4666777899999999887632 11110000 0 001
Q ss_pred EEEEee--cCCEEEEEeCCCeEEEEEcCCCccc
Q 037120 261 SIQLHA--ENQIIFAAGKHGSIYLWDLRGGRTS 291 (489)
Q Consensus 261 ~~~~~p--~~~~l~~~~~dg~i~lwd~~~~~~~ 291 (489)
.+.-+| .+..+++++.+|.+..+|..+|+.+
T Consensus 247 ~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~ 279 (394)
T PRK11138 247 DVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV 279 (394)
T ss_pred ccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE
Confidence 111122 3567788888999999999998754
No 352
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.54 E-value=0.0083 Score=37.90 Aligned_cols=31 Identities=13% Similarity=0.087 Sum_probs=28.2
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCC
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFES 127 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~ 127 (489)
+.|.+++|+|..++||.|+.+|.|.||.++-
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 3599999999999999999999999999843
No 353
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.54 E-value=0.3 Score=48.10 Aligned_cols=165 Identities=16% Similarity=0.174 Sum_probs=87.4
Q ss_pred eeEEEECCCCcEEEEE-ecCC----eEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 99 ISALDFDCKGIYLVSA-TRSG----CLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 99 V~~~~fs~~g~~la~g-~~dg----~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
+..+.+||+|++||.+ +..| .|+|+|+++++..... ... .. -..+.|.+++..++.+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-----------i~~----~~---~~~~~W~~d~~~~~y~ 187 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-----------IEN----PK---FSSVSWSDDGKGFFYT 187 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-----------EEE----EE---SEEEEECTTSSEEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-----------ccc----cc---cceEEEeCCCCEEEEE
Confidence 4578899999999866 3344 4999999986444311 000 00 1239999998877777
Q ss_pred EecC---------CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC---CcEEEEEC
Q 037120 174 ASTR---------SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH---GVVNIWDR 241 (489)
Q Consensus 174 ~~~d---------~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d---g~i~iwd~ 241 (489)
...+ ...|..|.+.........++.. ..+......+..+++++.+++..... ..+.+.|+
T Consensus 188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~--------~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~ 259 (414)
T PF02897_consen 188 RFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE--------PDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDL 259 (414)
T ss_dssp ECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC---------TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEEC
T ss_pred EeCcccccccCCCCcEEEEEECCCChHhCeeEEee--------cCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEec
Confidence 6533 2357888874432221111111 11111256788999999555555533 34788888
Q ss_pred CCC--CcCceeeccCCCCceeEEEEeecCCEEEEEeC---CCeEEEEEcCCCc
Q 037120 242 RVG--VLPSLELSTGSHGTLNSIQLHAENQIIFAAGK---HGSIYLWDLRGGR 289 (489)
Q Consensus 242 ~~~--~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~---dg~i~lwd~~~~~ 289 (489)
..+ .....+.+......+....-+..+.+++.+.. .+.|...++.+..
T Consensus 260 ~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 260 DDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp CCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred cccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccc
Confidence 874 11122222233333433333334444444422 5666666766654
No 354
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.017 Score=56.65 Aligned_cols=91 Identities=10% Similarity=0.168 Sum_probs=64.2
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCee-EEEEecCCCcEEEEEeCCCcE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLS-DLAFSAVNTSRLIASDTHGVV 236 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~s~dg~i 236 (489)
|.-+.|+|.-. ++|.+..+ |.|.+..++. +....+ .-|...++ +++|.|||+ .++.|-.||+|
T Consensus 23 i~~~ewnP~~d-LiA~~t~~-gelli~R~n~---------qRlwti----p~p~~~v~~sL~W~~DGk-llaVg~kdG~I 86 (665)
T KOG4640|consen 23 IKRIEWNPKMD-LIATRTEK-GELLIHRLNW---------QRLWTI----PIPGENVTASLCWRPDGK-LLAVGFKDGTI 86 (665)
T ss_pred eEEEEEcCccc-hhheeccC-CcEEEEEecc---------ceeEec----cCCCCccceeeeecCCCC-EEEEEecCCeE
Confidence 77799999875 88888888 8888877731 111111 22344555 999999999 99999999999
Q ss_pred EEEECCCCCcCceeeccCCCCceeEEEEe
Q 037120 237 NIWDRRVGVLPSLELSTGSHGTLNSIQLH 265 (489)
Q Consensus 237 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~~ 265 (489)
++.|+.++... ......-...|.++-|.
T Consensus 87 ~L~Dve~~~~l-~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 87 RLHDVEKGGRL-VSFLFSVETDISKGIWD 114 (665)
T ss_pred EEEEccCCCce-eccccccccchheeecc
Confidence 99999987622 11112335667777776
No 355
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.39 E-value=0.13 Score=50.58 Aligned_cols=124 Identities=11% Similarity=0.147 Sum_probs=73.9
Q ss_pred eeEEEeeCC----CCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC
Q 037120 158 LDAVRWNLA----NQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH 233 (489)
Q Consensus 158 V~~v~~~~~----~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d 233 (489)
|..+.|.|- ...+|+.-- ...|.||.+.....+..+.+.... +... ..-.---..+.|+|... .|+.-...
T Consensus 59 V~GlsW~P~~~~~~paLLAVQH--kkhVtVWqL~~s~~e~~K~l~sQt-cEi~-e~~pvLpQGCVWHPk~~-iL~VLT~~ 133 (671)
T PF15390_consen 59 VHGLSWAPPCTADTPALLAVQH--KKHVTVWQLCPSTTERNKLLMSQT-CEIR-EPFPVLPQGCVWHPKKA-ILTVLTAR 133 (671)
T ss_pred eeeeeecCcccCCCCceEEEec--cceEEEEEeccCccccccceeeee-eecc-CCcccCCCcccccCCCc-eEEEEecC
Confidence 788999886 334565555 379999999644333323222111 1000 00001123578999988 65555544
Q ss_pred CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEE-eCCCeEEEEEcCC
Q 037120 234 GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAA-GKHGSIYLWDLRG 287 (489)
Q Consensus 234 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~-~~dg~i~lwd~~~ 287 (489)
..=.+++++....++.-.+ ...+-|.|.+|.+||+.|+++ |+.=.-++||-..
T Consensus 134 dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 3434677776554432222 446889999999999987776 5455678998643
No 356
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.25 E-value=0.12 Score=50.01 Aligned_cols=155 Identities=12% Similarity=0.111 Sum_probs=82.3
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCccccc-CCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQC-NGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~-~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
.|..+.|.++..-||+|...|.|.||.+...+... .+ ..+..+ ..+.+. ...
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~-------~~~~~~-------------~~~~~~------~~~- 55 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNRE-------QPPDLD-------------YNFRRF------SLN- 55 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------------------------S--------GG-
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccC-------CCcccC-------------cccccc------ccc-
Confidence 48899999998899999999999999987632221 00 000000 111110 000
Q ss_pred CCCEEEEEEeccCCCCC-ceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc--
Q 037120 177 RSNVVSIYDIGYISDEP-VEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST-- 253 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-- 253 (489)
++.-.+-|+....... .+-+.+...+ ....+.|++++.+.-| +++.|..+|.+.|.|+|.+.......+.
T Consensus 56 -~~~~~l~di~~r~~~~~~~gf~P~~l~----~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~ 128 (395)
T PF08596_consen 56 -NSPGKLTDISDRAPPSLKEGFLPLTLL----DAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRES 128 (395)
T ss_dssp -GSS-SEEE-GGG--TT-SEEEEEEEEE-------S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG-
T ss_pred -CCCcceEEehhhCCcccccccCchhhe----eccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeecccccc
Confidence 0122333443221111 1223333322 3346799999987444 8999999999999999876422111111
Q ss_pred ----CCCCceeEEEEee-----c---CCEEEEEeCCCeEEEEEcC
Q 037120 254 ----GSHGTLNSIQLHA-----E---NQIIFAAGKHGSIYLWDLR 286 (489)
Q Consensus 254 ----~h~~~v~~~~~~p-----~---~~~l~~~~~dg~i~lwd~~ 286 (489)
.....|+++.|.- | .-.+++|...|.+.+|.+-
T Consensus 129 ~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 129 FLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp -T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred ccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEe
Confidence 2345688888873 2 2468888889999999875
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.79 Score=44.43 Aligned_cols=182 Identities=11% Similarity=0.051 Sum_probs=110.8
Q ss_pred eeEEEECCCCcE-EEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec-
Q 037120 99 ISALDFDCKGIY-LVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST- 176 (489)
Q Consensus 99 V~~~~fs~~g~~-la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~- 176 (489)
-..+++++.+.. .++...+..|.+.|..+...... ...+. . -..++++++++.+.++-..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~-------------~~vG~--~---P~~~~~~~~~~~vYV~n~~~ 137 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS-------------IPVGL--G---PVGLAVDPDGKYVYVANAGN 137 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE-------------eeecc--C---CceEEECCCCCEEEEEeccc
Confidence 456788888874 45555568999999666333221 11111 2 3459999999877776662
Q ss_pred -CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee-e---
Q 037120 177 -RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE-L--- 251 (489)
Q Consensus 177 -d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~--- 251 (489)
+ +++.+.|-... ..+.... .+- .+ ..+++.|+++..+++-..++.|.+.|..... ..+ .
T Consensus 138 ~~-~~vsvid~~t~-----~~~~~~~------vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~--v~~~~~~~ 201 (381)
T COG3391 138 GN-NTVSVIDAATN-----KVTATIP------VGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS--VVRGSVGS 201 (381)
T ss_pred CC-ceEEEEeCCCC-----eEEEEEe------cCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc--eecccccc
Confidence 4 78888887322 2222211 221 13 7899999999444444588999999977643 221 0
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeC-C--CeEEEEEcCCCcccce-eecCCccCCCCeeEEEeCCCCccee
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGK-H--GSIYLWDLRGGRTSAP-FHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~-d--g~i~lwd~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
...-...-..+.++|+|.++++.-. + +.+...|..++..... +...... ...+.++|+|..+.
T Consensus 202 ~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~----~~~v~~~p~g~~~y 268 (381)
T COG3391 202 LVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGA----PRGVAVDPAGKAAY 268 (381)
T ss_pred ccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCC----CCceeECCCCCEEE
Confidence 0111233457899999998887755 3 6999999988765333 1111102 34566677776553
No 358
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.21 E-value=0.13 Score=53.59 Aligned_cols=102 Identities=16% Similarity=0.203 Sum_probs=68.7
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeee-eceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLK-TRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
.+++-+ ++.+..||.|.... .++. .... ........+++-..+| +||.|+.+|.||+|| +.+.. .
T Consensus 545 tflGls--~n~lfriDpR~~~~---k~v~~~~k~-----Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd-~~g~~-A 610 (794)
T PF08553_consen 545 TFLGLS--DNSLFRIDPRLSGN---KLVDSQSKQ-----YSSKNNFSCFATTEDG--YIAVGSNKGDIRLYD-RLGKR-A 610 (794)
T ss_pred eEEEEC--CCceEEeccCCCCC---ceeeccccc-----cccCCCceEEEecCCc--eEEEEeCCCcEEeec-ccchh-h
Confidence 455555 48999999975431 1211 1111 1133456777766655 699999999999999 34432 2
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLR 286 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~ 286 (489)
...+.+-..+|..|..+.||+++++++ +..|-|+|..
T Consensus 611 KT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 611 KTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred hhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 333446678999999999999988776 5688888864
No 359
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.03 E-value=0.024 Score=35.85 Aligned_cols=34 Identities=9% Similarity=0.227 Sum_probs=29.8
Q ss_pred CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc
Q 037120 256 HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT 290 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~ 290 (489)
...|.+++|+|..++++.+..||.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 5543
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=1.6 Score=42.28 Aligned_cols=114 Identities=15% Similarity=0.184 Sum_probs=76.7
Q ss_pred eEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe--CCCcE
Q 037120 159 DAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD--THGVV 236 (489)
Q Consensus 159 ~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s--~dg~i 236 (489)
..++.++.+...++....+ +.|.+.|.... ..+.... .+. .-..+++.++++...++-. .++++
T Consensus 77 ~~i~v~~~~~~vyv~~~~~-~~v~vid~~~~-----~~~~~~~------vG~--~P~~~~~~~~~~~vYV~n~~~~~~~v 142 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDS-NTVSVIDTATN-----TVLGSIP------VGL--GPVGLAVDPDGKYVYVANAGNGNNTV 142 (381)
T ss_pred cceeeCCCCCeEEEecCCC-CeEEEEcCccc-----ceeeEee------ecc--CCceEEECCCCCEEEEEecccCCceE
Confidence 3478888887677777655 89999996222 2222222 111 5567899999984445444 36889
Q ss_pred EEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCc
Q 037120 237 NIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAG-KHGSIYLWDLRGGR 289 (489)
Q Consensus 237 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~-~dg~i~lwd~~~~~ 289 (489)
.+.|..+.+ .......-..+ ..++++|+|..++.+. .++.|.+.|..+..
T Consensus 143 svid~~t~~--~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~ 193 (381)
T COG3391 143 SVIDAATNK--VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS 193 (381)
T ss_pred EEEeCCCCe--EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc
Confidence 899988765 33332222233 8899999999888776 49999999976543
No 361
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.00 E-value=0.022 Score=48.86 Aligned_cols=104 Identities=6% Similarity=0.058 Sum_probs=55.2
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
.+++|+.+ |.|.+|..+...... -... .+-....+.|.-..++. +.++++.||.|+.|++.-.+ .+
T Consensus 72 ~~~vG~~d-g~v~~~n~n~~g~~~--d~~~--------s~~e~i~~~Ip~~~~~~-~~c~~~~dg~ir~~n~~p~k--~~ 137 (238)
T KOG2444|consen 72 KLMVGTSD-GAVYVFNWNLEGAHS--DRVC--------SGEESIDLGIPNGRDSS-LGCVGAQDGRIRACNIKPNK--VL 137 (238)
T ss_pred eEEeeccc-ceEEEecCCccchHH--Hhhh--------cccccceeccccccccc-eeEEeccCCceeeeccccCc--ee
Confidence 56677777 999999985322110 0000 00111112222222333 88899999999999998766 34
Q ss_pred eeccCCC-CceeEEEEeecCCEEEEE--eCCCeEEEEEcCC
Q 037120 250 ELSTGSH-GTLNSIQLHAENQIIFAA--GKHGSIYLWDLRG 287 (489)
Q Consensus 250 ~~~~~h~-~~v~~~~~~p~~~~l~~~--~~dg~i~lwd~~~ 287 (489)
.....|+ .++..+..+..++++..+ |.|..++.|++..
T Consensus 138 g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 138 GYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 3444555 344444444444444444 4455555555443
No 362
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=0.2 Score=48.40 Aligned_cols=154 Identities=17% Similarity=0.247 Sum_probs=84.9
Q ss_pred ecCCEEEEE-eCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce--eeccccceeeccceeEEEeCCCCCe
Q 037120 266 AENQIIFAA-GKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI--GTLKAQSKIVSQEIHSIDLDPSCSY 342 (489)
Q Consensus 266 p~~~~l~~~-~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i--~~~~~~~~~~~~~i~~~~~~p~~~~ 342 (489)
.+.++++.. +....++-.|+..|+.+..+.-+.. |+-+.+.|+...- .+-.+..-.....|..++..-++..
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-----i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~ 417 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-----INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN 417 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-----cceeeccCCcchhcccccccEEeecCCceEEecccccCcc
Confidence 344444444 4466788889999999988886543 5666777766432 1100000011112222211111111
Q ss_pred EEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCee
Q 037120 343 QLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSH 422 (489)
Q Consensus 343 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~ 422 (489)
.+ ....++. +... -..-|+..++.-+++.||.+|.||+||-...
T Consensus 418 kl------------~~~q~kq---------y~~k---------~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~------ 461 (644)
T KOG2395|consen 418 KL------------AVVQSKQ---------YSTK---------NNFSCFATTESGYIVVGSLKGDIRLYDRIGR------ 461 (644)
T ss_pred ee------------eeeeccc---------cccc---------cccceeeecCCceEEEeecCCcEEeehhhhh------
Confidence 11 1111111 1111 0123444555778999999999999998433
Q ss_pred eccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 423 VDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
+....++ +...+|..|....+|++|++... ..|.|+..
T Consensus 462 ----~AKTAlP------------gLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 462 ----RAKTALP------------GLGDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred ----hhhhccc------------ccCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 3333444 78899999999999997765544 55555443
No 363
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.64 E-value=3.6 Score=43.40 Aligned_cols=62 Identities=13% Similarity=0.181 Sum_probs=51.3
Q ss_pred cEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEE
Q 037120 396 SIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 396 ~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~ 475 (489)
++++++ -...|++|+.... +.+..-. .|..++.++...-.++.|+.|..-+++.+.
T Consensus 840 gkllA~--In~~vrLye~t~~----------~eLr~e~------------~~~~~~~aL~l~v~gdeI~VgDlm~Sitll 895 (1096)
T KOG1897|consen 840 GKLLAG--INQSVRLYEWTTE----------RELRIEC------------NISNPIIALDLQVKGDEIAVGDLMRSITLL 895 (1096)
T ss_pred CeEEEe--cCcEEEEEEcccc----------ceehhhh------------cccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence 777776 6679999999888 6776656 788899999999999999999999999987
Q ss_pred eccccc
Q 037120 476 SQKQQC 481 (489)
Q Consensus 476 ~~~~~~ 481 (489)
.-|...
T Consensus 896 ~y~~~e 901 (1096)
T KOG1897|consen 896 QYKGDE 901 (1096)
T ss_pred EEeccC
Confidence 665543
No 364
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.57 E-value=0.28 Score=48.14 Aligned_cols=125 Identities=10% Similarity=0.087 Sum_probs=69.0
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
...+.++|++..++ .++ +|.-.|+.... +.... .+.-...+|.+.+ .++.-...+.|.
T Consensus 35 p~~ls~npngr~v~-V~g--~geY~iyt~~~--------~r~k~---------~G~g~~~vw~~~n--~yAv~~~~~~I~ 92 (443)
T PF04053_consen 35 PQSLSHNPNGRFVL-VCG--DGEYEIYTALA--------WRNKA---------FGSGLSFVWSSRN--RYAVLESSSTIK 92 (443)
T ss_dssp -SEEEE-TTSSEEE-EEE--TTEEEEEETTT--------TEEEE---------EEE-SEEEE-TSS--EEEEE-TTS-EE
T ss_pred CeeEEECCCCCEEE-EEc--CCEEEEEEccC--------Ccccc---------cCceeEEEEecCc--cEEEEECCCeEE
Confidence 56799999987444 444 48888888411 11111 1244567899844 578788789999
Q ss_pred EE-ECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcc
Q 037120 238 IW-DRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEK 316 (489)
Q Consensus 238 iw-d~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 316 (489)
|+ ++.. + ..+.+.. ...+..+- + |..|+..+.+ .|.+||..+++.+..+.... |..+.|+++|++
T Consensus 93 I~kn~~~-~--~~k~i~~-~~~~~~If--~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~------vk~V~Ws~~g~~ 158 (443)
T PF04053_consen 93 IYKNFKN-E--VVKSIKL-PFSVEKIF--G-GNLLGVKSSD-FICFYDWETGKLIRRIDVSA------VKYVIWSDDGEL 158 (443)
T ss_dssp EEETTEE----TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E-------EEEEE-TTSSE
T ss_pred EEEcCcc-c--cceEEcC-CcccceEE--c-CcEEEEECCC-CEEEEEhhHcceeeEEecCC------CcEEEEECCCCE
Confidence 96 3322 2 1111110 11233332 2 7777776555 89999999999888887532 899999999988
Q ss_pred ee
Q 037120 317 IG 318 (489)
Q Consensus 317 i~ 318 (489)
++
T Consensus 159 va 160 (443)
T PF04053_consen 159 VA 160 (443)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 365
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.44 E-value=1.9 Score=38.94 Aligned_cols=174 Identities=13% Similarity=0.141 Sum_probs=100.3
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
..+.+..|+++.|+|+.+.|.+......-.|+=-..+..+..- .+.+ .+. --.+.+..++ .+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti------------PL~g-~~D---pE~Ieyig~n--~f 142 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI------------PLTG-FSD---PETIEYIGGN--QF 142 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe------------cccc-cCC---hhHeEEecCC--EE
Confidence 3344556999999999999988888777666654443333322 1122 111 2237777665 44
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCc-ccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-ce
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDV-QKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SL 249 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~ 249 (489)
+.+.+.++.+.++.+...... ....... +......+ +.....++|.|.+. .|+.+-+..=+.||.+...... ..
T Consensus 143 vi~dER~~~l~~~~vd~~t~~--~~~~~~~-i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~~ 218 (316)
T COG3204 143 VIVDERDRALYLFTVDADTTV--ISAKVQK-IPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLSV 218 (316)
T ss_pred EEEehhcceEEEEEEcCCccE--EeccceE-EeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCccccc
Confidence 444444488888888433111 1111111 11111223 66888999999998 7777777777777766543211 11
Q ss_pred eeccCCC-------CceeEEEEeecCCEEEEEeC-CCeEEEEEcCC
Q 037120 250 ELSTGSH-------GTLNSIQLHAENQIIFAAGK-HGSIYLWDLRG 287 (489)
Q Consensus 250 ~~~~~h~-------~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~ 287 (489)
.....+. ..|.++.|++....+++-|. ++.+.-.|...
T Consensus 219 ~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 219 HASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 1111222 34778899876555555544 77777777654
No 366
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.33 E-value=3.2 Score=40.81 Aligned_cols=118 Identities=12% Similarity=0.090 Sum_probs=70.4
Q ss_pred eeEEEeeCCCCCEEEEEecC---CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC-
Q 037120 158 LDAVRWNLANQDEVACASTR---SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH- 233 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d---~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d- 233 (489)
+...+++|++..++++.+.. ...|+++|+..+ ..+...-.. .....+.|.+++..++.+...+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-----~~l~d~i~~--------~~~~~~~W~~d~~~~~y~~~~~~ 192 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-----KFLPDGIEN--------PKFSSVSWSDDGKGFFYTRFDED 192 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-----EEEEEEEEE--------EESEEEEECTTSSEEEEEECSTT
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC-----cCcCCcccc--------cccceEEEeCCCCEEEEEEeCcc
Confidence 55788999998777665544 136999999443 333221100 0122399999988444444322
Q ss_pred ---------CcEEEEECCCCCcCceeeccCCCC-c-eeEEEEeecCCEEEEEeC---C-CeEEEEEcCCC
Q 037120 234 ---------GVVNIWDRRVGVLPSLELSTGSHG-T-LNSIQLHAENQIIFAAGK---H-GSIYLWDLRGG 288 (489)
Q Consensus 234 ---------g~i~iwd~~~~~~~~~~~~~~h~~-~-v~~~~~~p~~~~l~~~~~---d-g~i~lwd~~~~ 288 (489)
..|+.|.+.++...-...+..... . ...+..++++++++.... + ..+++.|+..+
T Consensus 193 ~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 193 QRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp TSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred cccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 247888888765431223332222 2 568889999999887644 4 56888898875
No 367
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.32 E-value=1 Score=42.68 Aligned_cols=132 Identities=14% Similarity=0.132 Sum_probs=68.0
Q ss_pred eEEEEecCCCcEEEEEeCCC--cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccc
Q 037120 215 SDLAFSAVNTSRLIASDTHG--VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSA 292 (489)
Q Consensus 215 ~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~ 292 (489)
+.=+|.++|..+|+++..|| .+.+.|+.+++ ..+...+-........++|+++.++-......|+-.|+++.+.-.
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--ITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV 116 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--EEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--EEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE
Confidence 33468889985666555555 56777888876 443333222223356677988888776666789999999987633
Q ss_pred eeecCCccCCCCeeEEEe--CCCCcceeecc-------------------------------------ccceeeccceeE
Q 037120 293 PFHNHKEVCHLPLTSLKL--ASMLEKIGTLK-------------------------------------AQSKIVSQEIHS 333 (489)
Q Consensus 293 ~~~~~~~~~~~~v~~l~~--~~~~~~i~~~~-------------------------------------~~~~~~~~~i~~ 333 (489)
.+...... +....| +.|+..++.+. ........-+-.
T Consensus 117 vy~~p~~~----~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH 192 (386)
T PF14583_consen 117 VYEVPDDW----KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGH 192 (386)
T ss_dssp EEE--TTE----EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEE
T ss_pred EEECCccc----ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccC
Confidence 33322333 333344 44555552111 000011233567
Q ss_pred EEeCCCCCeEEEEEecCCc
Q 037120 334 IDLDPSCSYQLAFHLDDGW 352 (489)
Q Consensus 334 ~~~~p~~~~~~~~~~~~~w 352 (489)
+.|+|....++++|.++.|
T Consensus 193 ~~fsP~dp~li~fCHEGpw 211 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPW 211 (386)
T ss_dssp EEEETTEEEEEEEEE-S-T
T ss_pred cccCCCCCCEEEEeccCCc
Confidence 7899999999999998887
No 368
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.26 E-value=1.3 Score=41.73 Aligned_cols=158 Identities=13% Similarity=0.149 Sum_probs=87.9
Q ss_pred eeEEEECCC----CcEEEEEec----------CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEee
Q 037120 99 ISALDFDCK----GIYLVSATR----------SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWN 164 (489)
Q Consensus 99 V~~~~fs~~----g~~la~g~~----------dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~ 164 (489)
+..+.|..+ -.+|+.|+. .|.|.+|++....... .............+|++++-.
T Consensus 29 ~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~-----------~~l~~i~~~~~~g~V~ai~~~ 97 (321)
T PF03178_consen 29 LCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENN-----------FKLKLIHSTEVKGPVTAICSF 97 (321)
T ss_dssp EEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----------------EEEEEEEEEESS-EEEEEEE
T ss_pred EEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccc-----------eEEEEEEEEeecCcceEhhhh
Confidence 334455543 578888875 2889999998830000 000000000111228888766
Q ss_pred CCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 037120 165 LANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVG 244 (489)
Q Consensus 165 ~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 244 (489)
. . .++.+. ++.|.+|++.... .+.....+ . ....+.++... ++ +++.|+....+.++..+..
T Consensus 98 ~--~-~lv~~~--g~~l~v~~l~~~~-----~l~~~~~~----~-~~~~i~sl~~~--~~-~I~vgD~~~sv~~~~~~~~ 159 (321)
T PF03178_consen 98 N--G-RLVVAV--GNKLYVYDLDNSK-----TLLKKAFY----D-SPFYITSLSVF--KN-YILVGDAMKSVSLLRYDEE 159 (321)
T ss_dssp T--T-EEEEEE--TTEEEEEEEETTS-----SEEEEEEE------BSSSEEEEEEE--TT-EEEEEESSSSEEEEEEETT
T ss_pred C--C-EEEEee--cCEEEEEEccCcc-----cchhhhee----c-ceEEEEEEecc--cc-EEEEEEcccCEEEEEEEcc
Confidence 2 2 455555 4899999995432 12222211 1 12256666554 55 8889998888887754432
Q ss_pred CcCceeecc--CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 037120 245 VLPSLELST--GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLR 286 (489)
Q Consensus 245 ~~~~~~~~~--~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~ 286 (489)
... +.... .....++++.|-++++.++++..+|.|.++...
T Consensus 160 ~~~-l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 160 NNK-LILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TE--EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred CCE-EEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 211 21111 234568888888777788888889999999876
No 369
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.25 E-value=2.8 Score=39.60 Aligned_cols=53 Identities=23% Similarity=0.349 Sum_probs=33.3
Q ss_pred CcEEEEECCCC-Cc-Cceee--ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCc
Q 037120 234 GVVNIWDRRVG-VL-PSLEL--STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR 289 (489)
Q Consensus 234 g~i~iwd~~~~-~~-~~~~~--~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~ 289 (489)
|.|.++++... .. ..++. .....++|++++-- +..++++ ..+.|.+|++...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~-~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVA-VGNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEE-ETTEEEEEEEETTS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEe-ecCEEEEEEccCcc
Confidence 88999999884 10 01211 12446888888766 4444443 35799999998876
No 370
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.20 E-value=1.6 Score=38.91 Aligned_cols=150 Identities=14% Similarity=0.049 Sum_probs=76.3
Q ss_pred CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEe
Q 037120 107 KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDI 186 (489)
Q Consensus 107 ~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~ 186 (489)
++.++.+++.++.|..||..+++..-.. ........ . . ...+ . .++.+..+ +.|..+|.
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~------~~~~~~~~---------~--~-~~~~-~-~v~v~~~~-~~l~~~d~ 93 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRF------DLPGPISG---------A--P-VVDG-G-RVYVGTSD-GSLYALDA 93 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEE------ECSSCGGS---------G--E-EEET-T-EEEEEETT-SEEEEEET
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEe------eccccccc---------e--e-eecc-c-ccccccce-eeeEeccc
Confidence 5566777789999999999886544321 00000000 0 1 1112 2 44444455 89999997
Q ss_pred ccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCc--------
Q 037120 187 GYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGT-------- 258 (489)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~-------- 258 (489)
..+. .+-..... ...... ..........+. .++.+..++.|..+|.++++.. . ........
T Consensus 94 ~tG~-----~~W~~~~~--~~~~~~-~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~tG~~~-w-~~~~~~~~~~~~~~~~ 162 (238)
T PF13360_consen 94 KTGK-----VLWSIYLT--SSPPAG-VRSSSSPAVDGD-RLYVGTSSGKLVALDPKTGKLL-W-KYPVGEPRGSSPISSF 162 (238)
T ss_dssp TTSC-----EEEEEEE---SSCTCS-TB--SEEEEETT-EEEEEETCSEEEEEETTTTEEE-E-EEESSTT-SS--EEEE
T ss_pred CCcc-----eeeeeccc--cccccc-cccccCceEecC-EEEEEeccCcEEEEecCCCcEE-E-EeecCCCCCCcceeee
Confidence 4432 21110000 000011 112222222366 7888888999999999998732 1 12111111
Q ss_pred --eeEEEEeecCCEEEEEeCCCe-EEEEEcCCCcc
Q 037120 259 --LNSIQLHAENQIIFAAGKHGS-IYLWDLRGGRT 290 (489)
Q Consensus 259 --v~~~~~~p~~~~l~~~~~dg~-i~lwd~~~~~~ 290 (489)
+..-....++ .+++++.++. +.+ |+.+++.
T Consensus 163 ~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~ 195 (238)
T PF13360_consen 163 SDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEK 195 (238)
T ss_dssp TTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEE
T ss_pred cccccceEEECC-EEEEEcCCCeEEEE-ECCCCCE
Confidence 1222222234 7777777775 555 9988763
No 371
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.07 E-value=0.12 Score=44.56 Aligned_cols=62 Identities=11% Similarity=0.051 Sum_probs=35.7
Q ss_pred CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEe
Q 037120 108 GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDI 186 (489)
Q Consensus 108 g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~ 186 (489)
+..|++|+.+|.|.+|++...-..... .....+. |.+.--.-+...+..+++.| |.|+.|++
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~-------~~s~~e~---------i~~~Ip~~~~~~~~c~~~~d-g~ir~~n~ 131 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDR-------VCSGEES---------IDLGIPNGRDSSLGCVGAQD-GRIRACNI 131 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHh-------hhccccc---------ceeccccccccceeEEeccC-Cceeeecc
Confidence 567999999999999998842111100 0000000 22222122222377777777 99999999
No 372
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.04 E-value=3.8 Score=40.12 Aligned_cols=31 Identities=23% Similarity=0.201 Sum_probs=27.6
Q ss_pred CCceEEEEeeCCCCeEEeccCcceeEEEecc
Q 037120 448 SEGVTACVTHPLNNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 448 ~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~ 478 (489)
.+++..++.||+++.||.-..+|.+.|++..
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 4689999999999999999999999997654
No 373
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.03 E-value=3.3 Score=39.29 Aligned_cols=112 Identities=11% Similarity=0.056 Sum_probs=56.4
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeec-eeeeeecCCcccCeeEEEEecC---CCcEEEEEeCC
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTR-RSVTVVGSDVQKGLSDLAFSAV---NTSRLIASDTH 233 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~---~~~~l~s~s~d 233 (489)
-++|+|.|++. ++++-- . |.|++++. .+... ..+... .. ..........++++|+ +..+.++.+..
T Consensus 4 P~~~a~~pdG~-l~v~e~-~-G~i~~~~~-~g~~~--~~v~~~~~v----~~~~~~gllgia~~p~f~~n~~lYv~~t~~ 73 (331)
T PF07995_consen 4 PRSMAFLPDGR-LLVAER-S-GRIWVVDK-DGSLK--TPVADLPEV----FADGERGLLGIAFHPDFASNGYLYVYYTNA 73 (331)
T ss_dssp EEEEEEETTSC-EEEEET-T-TEEEEEET-TTEEC--EEEEE-TTT----BTSTTBSEEEEEE-TTCCCC-EEEEEEEEE
T ss_pred ceEEEEeCCCc-EEEEeC-C-ceEEEEeC-CCcCc--ceecccccc----cccccCCcccceeccccCCCCEEEEEEEcc
Confidence 46799999974 666544 5 99999993 22110 111111 11 1445568899999995 22133433321
Q ss_pred --------CcEEEEECCCC------CcCceeeccC---CCCceeEEEEeecCCEEEEEeCCCe
Q 037120 234 --------GVVNIWDRRVG------VLPSLELSTG---SHGTLNSIQLHAENQIIFAAGKHGS 279 (489)
Q Consensus 234 --------g~i~iwd~~~~------~~~~~~~~~~---h~~~v~~~~~~p~~~~l~~~~~dg~ 279 (489)
..|.-|..... ....+..... ....-..|.|.|+|.+.++.|..+.
T Consensus 74 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 74 DEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp -TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred cCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 23433443332 0111111111 2234467999999977777776443
No 374
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.00 E-value=0.95 Score=44.06 Aligned_cols=133 Identities=11% Similarity=0.098 Sum_probs=79.0
Q ss_pred CCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCc------EEEEEeCCCcEEE
Q 037120 165 LANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTS------RLIASDTHGVVNI 238 (489)
Q Consensus 165 ~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~------~l~s~s~dg~i~i 238 (489)
.+...++.++... ..++-.|+..+ +++.... -|. .|+-+.+.|+.+. .-+.|-.|..|+-
T Consensus 343 ~dsnlil~~~~~~-~~l~klDIE~G-----KIVeEWk-------~~~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfr 408 (644)
T KOG2395|consen 343 ADSNLILMDGGEQ-DKLYKLDIERG-----KIVEEWK-------FED-DINMVDITPDFKFAQLTSEQTLVGLSDNSVFR 408 (644)
T ss_pred cccceEeeCCCCc-Ccceeeecccc-----eeeeEee-------ccC-CcceeeccCCcchhcccccccEEeecCCceEE
Confidence 3333344455544 66777777332 3332222 122 2666677776541 1223446889999
Q ss_pred EECCCCCcCceeeccCC----CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCC
Q 037120 239 WDRRVGVLPSLELSTGS----HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 239 wd~~~~~~~~~~~~~~h----~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~ 313 (489)
||.|......+....+| .....|.+-..+| ++++||.+|.|||||- .+.. ...+++...+ |..+..+.+
T Consensus 409 iDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~----I~hVdvtad 482 (644)
T KOG2395|consen 409 IDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDA----IKHVDVTAD 482 (644)
T ss_pred ecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCc----eeeEEeecc
Confidence 99997553222222222 2334566655555 6789999999999997 4443 5556666655 999999999
Q ss_pred Ccce
Q 037120 314 LEKI 317 (489)
Q Consensus 314 ~~~i 317 (489)
|..|
T Consensus 483 GKwi 486 (644)
T KOG2395|consen 483 GKWI 486 (644)
T ss_pred CcEE
Confidence 9766
No 375
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.88 E-value=0.99 Score=47.76 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=51.1
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
.+|++++|+.+|..++.|-.+|.|.+||......... +..|...+.+|.-+.|..++. .+.++..
T Consensus 131 ~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~--------------i~e~~ap~t~vi~v~~t~~nS-~llt~D~ 195 (1206)
T KOG2079|consen 131 GPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKV--------------ITEHGAPVTGVIFVGRTSQNS-KLLTSDT 195 (1206)
T ss_pred CcceeeEecCCCceeccccCCCcEEEEEccCCcceee--------------eeecCCccceEEEEEEeCCCc-EEEEccC
Confidence 3499999999999999999999999999998443331 122333433466666666654 5666654
Q ss_pred CCCEEEEEEec
Q 037120 177 RSNVVSIYDIG 187 (489)
Q Consensus 177 d~g~i~vwd~~ 187 (489)
. |. +|.+.
T Consensus 196 ~-Gs--f~~lv 203 (1206)
T KOG2079|consen 196 G-GS--FWKLV 203 (1206)
T ss_pred C-Cc--eEEEE
Confidence 4 65 77764
No 376
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.85 E-value=1.7 Score=39.08 Aligned_cols=101 Identities=15% Similarity=0.190 Sum_probs=66.2
Q ss_pred eEEEEecCCCcEEEEEeCCCc-EEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-----CCeEEEEEcCCC
Q 037120 215 SDLAFSAVNTSRLIASDTHGV-VNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-----HGSIYLWDLRGG 288 (489)
Q Consensus 215 ~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-----dg~i~lwd~~~~ 288 (489)
..|+|+|.-+.-++.+-.-|+ ..++|......+...........--.=.|+|||.+|+++-. .|.|-|||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 457888887755555555554 56889887765532111100111112369999999999844 478999999964
Q ss_pred c-ccceeecCCccCCCCeeEEEeCCCCcceee
Q 037120 289 R-TSAPFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 289 ~-~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
- .+-++..|.-. -..+.|.+||+.++-
T Consensus 151 fqrvgE~~t~GiG----pHev~lm~DGrtlvv 178 (366)
T COG3490 151 FQRVGEFSTHGIG----PHEVTLMADGRTLVV 178 (366)
T ss_pred cceecccccCCcC----cceeEEecCCcEEEE
Confidence 3 37777777655 677888899987753
No 377
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.63 E-value=5.2 Score=41.12 Aligned_cols=94 Identities=9% Similarity=0.062 Sum_probs=53.0
Q ss_pred cCeeEEEEecCCCcEEEEEe------CCC--cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCC------
Q 037120 212 KGLSDLAFSAVNTSRLIASD------THG--VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKH------ 277 (489)
Q Consensus 212 ~~v~~~~~~~~~~~~l~s~s------~dg--~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d------ 277 (489)
..+.+.+++|+|+ .++..- .|. .|.+++..... .....+ ...+.-.|+|+|..+.+....
T Consensus 350 ~~vsspaiSpdG~-~vA~v~~~~~~~~d~~s~Lwv~~~gg~~---~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGR-QVAAVVTLGRGAPDPASSLWVGPLGGVA---VQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCC-EEEEEEeecCCCCCcceEEEEEeCCCcc---eeeecC--CCCCCceECCCCCceEEEecCcceEEE
Confidence 3678899999999 555444 243 45555643221 212222 237788999998877766432
Q ss_pred ------CeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 278 ------GSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 278 ------g~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
+.+.+.+++.+.... ..... |.++.|+|||..++
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~---~~~g~----Issl~wSpDG~RiA 463 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS---RVPGP----ISELQLSRDGVRAA 463 (591)
T ss_pred eccCCCceEEEEeccCchhhh---ccCCC----cCeEEECCCCCEEE
Confidence 233333443332211 11223 78888888887765
No 378
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.62 E-value=0.075 Score=55.59 Aligned_cols=88 Identities=16% Similarity=0.285 Sum_probs=62.6
Q ss_pred EEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCe
Q 037120 226 RLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPL 305 (489)
Q Consensus 226 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v 305 (489)
.++.|+..|.|...|.+..=.+ ...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..+..+ ...|
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~-~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap-~t~v 178 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGP-LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP-VTGV 178 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccch-hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc-cceE
Confidence 6788888899998888763211 1112233588999999999999999999999999999999888887765533 1123
Q ss_pred eEEEeCCCCc
Q 037120 306 TSLKLASMLE 315 (489)
Q Consensus 306 ~~l~~~~~~~ 315 (489)
-.+.+..++.
T Consensus 179 i~v~~t~~nS 188 (1206)
T KOG2079|consen 179 IFVGRTSQNS 188 (1206)
T ss_pred EEEEEeCCCc
Confidence 3334444444
No 379
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.50 E-value=0.28 Score=51.84 Aligned_cols=158 Identities=9% Similarity=0.056 Sum_probs=91.9
Q ss_pred eeEEEECCCCcEEEEEec--CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 99 ISALDFDCKGIYLVSATR--SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~--dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
|..+...+|+...++... +-.|..||+.+......+ +..+......-.....-..++.|+|.-....+....
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~------~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~ 176 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYE------TTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLS 176 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhh------hccccccccchhccccccccccccCCccchhhhhcc
Confidence 555666777766655443 447889999874333211 000000000011112226789999886655566666
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc-CC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST-GS 255 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~h 255 (489)
| +.|++..+.... ..+.. ..-...+++++|+|.|+ .++.|-..|++.-|-..-..+..+.... ..
T Consensus 177 d-lsl~V~~~~~~~----~~v~s--------~p~t~~~Tav~WSprGK-Ql~iG~nnGt~vQy~P~leik~~ip~Pp~~e 242 (1405)
T KOG3630|consen 177 D-LSLRVKSTKQLA----QNVTS--------FPVTNSQTAVLWSPRGK-QLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE 242 (1405)
T ss_pred c-cchhhhhhhhhh----hhhcc--------cCcccceeeEEeccccc-eeeEecCCCeEEEeecccceeecccCCCcCC
Confidence 6 999998883221 11111 12345889999999999 9999999999988865432111111110 11
Q ss_pred CCceeEEEEeecCCEEEEEeC
Q 037120 256 HGTLNSIQLHAENQIIFAAGK 276 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~ 276 (489)
...|.+|+|-....++++-+.
T Consensus 243 ~yrvl~v~Wl~t~eflvvy~n 263 (1405)
T KOG3630|consen 243 NYRVLSVTWLSTQEFLVVYGN 263 (1405)
T ss_pred CcceeEEEEecceeEEEEecc
Confidence 467999999877777665543
No 380
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.33 E-value=5.6 Score=38.80 Aligned_cols=157 Identities=9% Similarity=0.011 Sum_probs=77.6
Q ss_pred CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCce-eEEEeeCCCCCEEEEEecCCCEEEEEEe
Q 037120 108 GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQL-DAVRWNLANQDEVACASTRSNVVSIYDI 186 (489)
Q Consensus 108 g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V-~~v~~~~~~~~~l~s~~~d~g~i~vwd~ 186 (489)
+..+.+++.+|.+.-+|..+++..=.. ......... +......+ ..+... + ..++.++.+ |.+.-+|.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~------~~~~~~~~~-~~~~~~~~~~~~~v~--~-~~v~v~~~~-g~l~ald~ 137 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSV------DLSEKDGWF-SKNKSALLSGGVTVA--G-GKVYIGSEK-GQVYALNA 137 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEE------cCCCccccc-ccccccccccccEEE--C-CEEEEEcCC-CEEEEEEC
Confidence 556777778888888888775543211 000000000 00000000 001221 2 245555555 89999998
Q ss_pred ccCCCCCceeeeeceeeeeecCCcccCeeE-EEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCC----ceeE
Q 037120 187 GYISDEPVEVLKTRRSVTVVGSDVQKGLSD-LAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHG----TLNS 261 (489)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~----~v~~ 261 (489)
.++... .. .. +.+ .+.+ ... .+. .++.++.++.+..+|.++++.. .+....... ...+
T Consensus 138 ~tG~~~----W~-~~-----~~~---~~~ssP~v--~~~-~v~v~~~~g~l~ald~~tG~~~-W~~~~~~~~~~~~~~~s 200 (394)
T PRK11138 138 EDGEVA----WQ-TK-----VAG---EALSRPVV--SDG-LVLVHTSNGMLQALNESDGAVK-WTVNLDVPSLTLRGESA 200 (394)
T ss_pred CCCCCc----cc-cc-----CCC---ceecCCEE--ECC-EEEEECCCCEEEEEEccCCCEe-eeecCCCCcccccCCCC
Confidence 544211 10 00 011 1111 111 133 5666778899999999998732 211111000 0011
Q ss_pred EEEeecCCEEEEEeCCCeEEEEEcCCCccccee
Q 037120 262 IQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPF 294 (489)
Q Consensus 262 ~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~ 294 (489)
-.. .+..++.++.+|.+..+|..+|+.+-..
T Consensus 201 P~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 201 PAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred CEE--ECCEEEEEcCCCEEEEEEccCChhhhee
Confidence 111 2345777888999999999998865443
No 381
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.25 E-value=3.4 Score=36.03 Aligned_cols=109 Identities=14% Similarity=0.089 Sum_probs=65.0
Q ss_pred EEEeeCCCCCEEEEEecCCCEEEEEEecc--CCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 160 AVRWNLANQDEVACASTRSNVVSIYDIGY--ISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 160 ~v~~~~~~~~~l~s~~~d~g~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
.++|+.+.+.+.+.-+.+ -+|.-||... +......++-..+.. .+ .+|. .--.++..-.|. +++++-..++|.
T Consensus 162 gl~Wd~d~K~fY~iDsln-~~V~a~dyd~~tG~~snr~~i~dlrk~-~~-~e~~-~PDGm~ID~eG~-L~Va~~ng~~V~ 236 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLN-YEVDAYDYDCPTGDLSNRKVIFDLRKS-QP-FESL-EPDGMTIDTEGN-LYVATFNGGTVQ 236 (310)
T ss_pred cccccccCcEEEEEccCc-eEEeeeecCCCcccccCcceeEEeccC-CC-cCCC-CCCcceEccCCc-EEEEEecCcEEE
Confidence 389998877677777776 8898898542 211111111111100 00 0111 112234455666 888888899999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEee-cCCEEEEEe
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHA-ENQIIFAAG 275 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~~~~ 275 (489)
..|..+++ .+..+.-....|+|++|-- +-..+++++
T Consensus 237 ~~dp~tGK--~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 237 KVDPTTGK--ILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred EECCCCCc--EEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 99999998 5555555578999999963 334444443
No 382
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.93 E-value=2.7 Score=43.22 Aligned_cols=162 Identities=7% Similarity=0.044 Sum_probs=80.0
Q ss_pred eeEEEECCCCcEEEEEecC-CeEEEEeCCCccccc-CCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 99 ISALDFDCKGIYLVSATRS-GCLTVHDFESLYYQC-NGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~d-g~i~vwd~~~~~~~~-~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
...-.|+|+|..|++.... ..+++.+-....... ... ..|... . .....|..++|+||+..+++...
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~v--d~ge~~------~--~~~g~Issl~wSpDG~RiA~i~~- 467 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPV--DASAVA------S--RVPGPISELQLSRDGVRAAMIIG- 467 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEec--cCchhh------h--ccCCCcCeEEECCCCCEEEEEEC-
Confidence 6778899999888887643 233333322110000 000 000000 0 11123899999999986666553
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC--
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG-- 254 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-- 254 (489)
+.|.+=-+....... ..+....... .+-...+.++.|..++. ++ .+..++...+|-+.-...... ....
T Consensus 468 --g~v~Va~Vvr~~~G~-~~l~~~~~l~---~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~vDG~~~~-~~~~~n 538 (591)
T PRK13616 468 --GKVYLAVVEQTEDGQ-YALTNPREVG---PGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVNLDGSNSD-ALPSRN 538 (591)
T ss_pred --CEEEEEEEEeCCCCc-eeecccEEee---cccCCccccceEecCCE-EE-EEecCCCCceEEEecCCcccc-ccCCCC
Confidence 777775443221121 2221111111 22223468899999887 44 445455555565443221111 1111
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCeEEE
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGSIYL 282 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~i~l 282 (489)
...++.+++-+++ .++.+..+|.+.+
T Consensus 539 ~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 539 LSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred ccCceEEEecCCc--eEEEEcCCceEEe
Confidence 2456667776653 4666666775444
No 383
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.66 E-value=2.1 Score=43.67 Aligned_cols=106 Identities=19% Similarity=0.224 Sum_probs=64.7
Q ss_pred CeeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCcCceeeccCCCCceeEEEEe--ecCCEEEEEeCCCeEEEEEcCC--
Q 037120 213 GLSDLAFSAVNTSRLIASD-THGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLH--AENQIIFAAGKHGSIYLWDLRG-- 287 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~--p~~~~l~~~~~dg~i~lwd~~~-- 287 (489)
...-+.-+.-++ ++... ....+.|||.+.+....-+.+ ...+.|..+.|. |+++.+++.|..+.|.+|--..
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 334444454444 44444 455799999998753322222 446889999985 6899999999999999985421
Q ss_pred ----C---cccceee--cCCccCCCCeeEEEeCCCCcceeeccccc
Q 037120 288 ----G---RTSAPFH--NHKEVCHLPLTSLKLASMLEKIGTLKAQS 324 (489)
Q Consensus 288 ----~---~~~~~~~--~~~~~~~~~v~~l~~~~~~~~i~~~~~~~ 324 (489)
+ ..++.+. .+. ..||.+..|.++|..+.....+.
T Consensus 108 y~~~~p~w~~i~~i~i~~~T---~h~Igds~Wl~~G~LvV~sGNql 150 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHT---PHPIGDSIWLKDGTLVVGSGNQL 150 (631)
T ss_pred hhcCCcccceeEEEEeecCC---CCCccceeEecCCeEEEEeCCEE
Confidence 1 1133322 222 12478888888887775433333
No 384
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.51 E-value=0.36 Score=49.83 Aligned_cols=169 Identities=14% Similarity=0.091 Sum_probs=92.5
Q ss_pred CceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCC-CEEEEE
Q 037120 97 PGISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQ-DEVACA 174 (489)
Q Consensus 97 ~~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~-~~l~s~ 174 (489)
.+|-.++|-.- -..++ -.-|.+.|||++-. . |.+.+......-...+.++.-|.|.|--. ...++.
T Consensus 133 G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l---~-------G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~ 200 (1283)
T KOG1916|consen 133 GGVGDLQFAHTKCPKGR--RLVGELFVYDVDVL---Q-------GEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICY 200 (1283)
T ss_pred CCcccccccccCChHHH--HHhhhhheeehHhh---c-------cccccceEEeecCcCCCCcceeeecccccccceeee
Confidence 34667777432 11111 23467889998751 1 12333333333333334455677766411 133444
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEE-----------EecCCCcEEEEEeCCCcEEEEECCC
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLA-----------FSAVNTSRLIASDTHGVVNIWDRRV 243 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-----------~~~~~~~~l~s~s~dg~i~iwd~~~ 243 (489)
..++++|++..+..... .- +.+|...+.+++ .+|||. .|+.+..||.++.|.+.-
T Consensus 201 ~~~~~~i~lL~~~ra~~---------~l----~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 201 GLKGGEIRLLNINRALR---------SL----FRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred ccCCCceeEeeechHHH---------HH----HHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeee
Confidence 44458888877732110 00 133555555443 578898 899999999988887653
Q ss_pred CCc---CceeeccCCC-CceeEEEEeec---------CCEEEEEeC-CCeEEEEEcCCCccc
Q 037120 244 GVL---PSLELSTGSH-GTLNSIQLHAE---------NQIIFAAGK-HGSIYLWDLRGGRTS 291 (489)
Q Consensus 244 ~~~---~~~~~~~~h~-~~v~~~~~~p~---------~~~l~~~~~-dg~i~lwd~~~~~~~ 291 (489)
..+ .|+...+.|. .+-.|.-++.+ -.++++++. ..-+++|.....+|+
T Consensus 267 ~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 267 TGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 221 1555555666 33333333321 135667766 677999998888875
No 385
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.43 E-value=3.1 Score=38.77 Aligned_cols=108 Identities=11% Similarity=0.045 Sum_probs=62.1
Q ss_pred eEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC-cEE
Q 037120 159 DAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG-VVN 237 (489)
Q Consensus 159 ~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg-~i~ 237 (489)
..|+|+|+++.++++=+.. +.|.-|++....... -....... +......--.++...+|. +.+++-.+| .|.
T Consensus 166 NGla~SpDg~tly~aDT~~-~~i~r~~~d~~~g~~---~~~~~~~~--~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~ 238 (307)
T COG3386 166 NGLAFSPDGKTLYVADTPA-NRIHRYDLDPATGPI---GGRRGFVD--FDEEPGLPDGMAVDADGN-LWVAAVWGGGRVV 238 (307)
T ss_pred CceEECCCCCEEEEEeCCC-CeEEEEecCcccCcc---CCcceEEE--ccCCCCCCCceEEeCCCC-EEEecccCCceEE
Confidence 3499999998677766655 888888884211110 00011111 122334555667777777 443333333 899
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEe-ecCCEEEEEeC
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLH-AENQIIFAAGK 276 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~-p~~~~l~~~~~ 276 (489)
+|+.. ++ .+....-....+++++|- |+.+.|++++.
T Consensus 239 ~~~pd-G~--l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 239 RFNPD-GK--LLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EECCC-Cc--EEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 99988 55 344444333667788874 45666666655
No 386
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.39 E-value=3.6 Score=39.66 Aligned_cols=153 Identities=12% Similarity=0.104 Sum_probs=74.0
Q ss_pred ceeEEEECCCCcEEEEEe-----------cCC-eEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeC
Q 037120 98 GISALDFDCKGIYLVSAT-----------RSG-CLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNL 165 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~-----------~dg-~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~ 165 (489)
....|+|+++|+++++-. ..+ .|.+++-.... |.......+...... ...++|.+
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgd----------G~~d~~~vfa~~l~~---p~Gi~~~~ 81 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGD----------GKYDKSNVFAEELSM---VTGLAVAV 81 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCC----------CCcceeEEeecCCCC---ccceeEec
Confidence 467889999999887753 223 66666543210 011110111111112 45588888
Q ss_pred CCCCEEEEEecCCCEEEEE-EeccCC-CC-CceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC---------
Q 037120 166 ANQDEVACASTRSNVVSIY-DIGYIS-DE-PVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH--------- 233 (489)
Q Consensus 166 ~~~~~l~s~~~d~g~i~vw-d~~~~~-~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d--------- 233 (489)
++ ++++.. ..|..| |..... .. ..+++... +......+....+.++|.|+|. +.++-+..
T Consensus 82 ~G--lyV~~~---~~i~~~~d~~gdg~ad~~~~~l~~~--~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~ 153 (367)
T TIGR02604 82 GG--VYVATP---PDILFLRDKDGDDKADGEREVLLSG--FGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPG 153 (367)
T ss_pred CC--EEEeCC---CeEEEEeCCCCCCCCCCccEEEEEc--cCCCCCcccccccCceECCCCC-EEEecccCCCceeccCC
Confidence 76 565543 344434 442211 00 11111110 1000011345678899999998 55544411
Q ss_pred ----------CcEEEEECCCCCcCceeecc-CCCCceeEEEEeecCCEEEEEe
Q 037120 234 ----------GVVNIWDRRVGVLPSLELST-GSHGTLNSIQLHAENQIIFAAG 275 (489)
Q Consensus 234 ----------g~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~~~~ 275 (489)
|.|.-+|...++ ++.+. ++ .....++|+|+|+++++-.
T Consensus 154 ~~~~~~~~~~g~i~r~~pdg~~---~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 154 TSDESRQGLGGGLFRYNPDGGK---LRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CccCcccccCceEEEEecCCCe---EEEEecCc-CCCccceECCCCCEEEEcc
Confidence 345555554433 22222 22 2245789999988765543
No 387
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.34 E-value=4.4 Score=41.96 Aligned_cols=167 Identities=13% Similarity=0.103 Sum_probs=87.5
Q ss_pred CcEEEEEecCCeEEEEeCCCcccccC-------CCCCCCCCcccccccccCC-CCCCceeEEEeeCCCC-CEEEEEecCC
Q 037120 108 GIYLVSATRSGCLTVHDFESLYYQCN-------GTLPGVGLKEDQSKHLLHI-PLPQQLDAVRWNLANQ-DEVACASTRS 178 (489)
Q Consensus 108 g~~la~g~~dg~i~vwd~~~~~~~~~-------~~~~~~g~~~~~~~~~~h~-~~~~~V~~v~~~~~~~-~~l~s~~~d~ 178 (489)
+++|+++. .+.|.||+......... .+.+. ........+-. .....|..+....-+. .+|+.+.+|
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~---~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~Dd- 123 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPE---FTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDD- 123 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCcc---ccccccccccCCCCCceeeEEEecccCCeeEEEEEecC-
Confidence 66777765 67899999876443221 00000 00000000000 0112255555443333 355555555
Q ss_pred CEEEEEEeccCC-----C-CC------ceeeeeceeeeeecCCcccCeeEEEEe--cCCCcEEEEEeCCCcEEEEECCCC
Q 037120 179 NVVSIYDIGYIS-----D-EP------VEVLKTRRSVTVVGSDVQKGLSDLAFS--AVNTSRLIASDTHGVVNIWDRRVG 244 (489)
Q Consensus 179 g~i~vwd~~~~~-----~-~~------~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~l~s~s~dg~i~iwd~~~~ 244 (489)
|.|.+|.+.... . .. ...+++. +. ..-...+++++++ .... +||.+++...|.||-....
T Consensus 124 G~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~--f~---~~v~~SaWGLdIh~~~~~r-lIAVSsNs~~VTVFaf~l~ 197 (717)
T PF08728_consen 124 GDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPF--FH---LRVGASAWGLDIHDYKKSR-LIAVSSNSQEVTVFAFALV 197 (717)
T ss_pred CeEEEEEHHHHHHHHHhhccccccccccccCCCC--eE---eecCCceeEEEEEecCcce-EEEEecCCceEEEEEEecc
Confidence 999999774210 0 00 0011111 11 1123488999998 6666 7888888888887755442
Q ss_pred CcC-ceeeccCCCCceeEEEEeecC-----C-EEEEEeCCCeEEEEEc
Q 037120 245 VLP-SLELSTGSHGTLNSIQLHAEN-----Q-IIFAAGKHGSIYLWDL 285 (489)
Q Consensus 245 ~~~-~~~~~~~h~~~v~~~~~~p~~-----~-~l~~~~~dg~i~lwd~ 285 (489)
... .......|..-|.+|+|-++. . .+++++-.|.+-+|++
T Consensus 198 ~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 198 DERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 111 111112355678899997754 2 5555666999988887
No 388
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.33 E-value=0.31 Score=29.87 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=25.2
Q ss_pred CceeEEEEeecC---CEEEEEeCCCeEEEEEcCC
Q 037120 257 GTLNSIQLHAEN---QIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 257 ~~v~~~~~~p~~---~~l~~~~~dg~i~lwd~~~ 287 (489)
+.|.++.|+|.. .+|+.+-.-|.|.|+|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999854 4777776789999999995
No 389
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.33 E-value=0.79 Score=39.76 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=65.4
Q ss_pred eeEEEEecCCCcEEEEEeCCCcEEEEE--CCCCCcC---ceeecc---CCCCc-eeEEEEeecCCEEEEEeCCCeEEEEE
Q 037120 214 LSDLAFSAVNTSRLIASDTHGVVNIWD--RRVGVLP---SLELST---GSHGT-LNSIQLHAENQIIFAAGKHGSIYLWD 284 (489)
Q Consensus 214 v~~~~~~~~~~~~l~s~s~dg~i~iwd--~~~~~~~---~~~~~~---~h~~~-v~~~~~~p~~~~l~~~~~dg~i~lwd 284 (489)
-+.++|..+.+.+.++-+.+-.|.-|| ..++... .+..+. ..+.. --.++++.+|.+.+++-..++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 356899988885566667888888888 4444211 111111 11111 12456677888888888899999999
Q ss_pred cCCCcccceeecCCccCCCCeeEEEeCCC
Q 037120 285 LRGGRTSAPFHNHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 313 (489)
..+|+.+.++.-.... |++++|--.
T Consensus 240 p~tGK~L~eiklPt~q----itsccFgGk 264 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQ----ITSCCFGGK 264 (310)
T ss_pred CCCCcEEEEEEcCCCc----eEEEEecCC
Confidence 9999999988876655 899888643
No 390
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.30 E-value=7.1 Score=36.53 Aligned_cols=118 Identities=14% Similarity=0.050 Sum_probs=64.1
Q ss_pred eeEEEECCCCcEEEEEec--CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 99 ISALDFDCKGIYLVSATR--SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~--dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
...++++.||+++..-.. --.|.|-|+...+.... .+...| .-.-|.++.-+.+-+.
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~e---------i~~PGC------------~~iyP~~~~~F~~lC~ 155 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGE---------IDTPGC------------WLIYPSGNRGFSMLCG 155 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEE---------EEGTSE------------EEEEEEETTEEEEEET
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeee---------ecCCCE------------EEEEecCCCceEEEec
Confidence 445678899988877554 56788999988555442 111111 2222333334555555
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGV 245 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 245 (489)
| |++.-..+....... ......| ...+...+..-++...+. .++--+.+|.|+--|+....
T Consensus 156 D-Gsl~~v~Ld~~Gk~~---~~~t~~F---~~~~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 156 D-GSLLTVTLDADGKEA---QKSTKVF---DPDDDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp T-SCEEEEEETSTSSEE---EEEEEES---STTTS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSS
T ss_pred C-CceEEEEECCCCCEe---Eeecccc---CCCCcccccccceECCCC-eEEEEecCCEEEEEeccCCc
Confidence 6 999999985432221 1111112 122222333444555555 56667889999998887654
No 391
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.21 E-value=1.9 Score=41.43 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=32.9
Q ss_pred cCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce--eeccC---------------CCCceeEEEEeecCCEEEEE
Q 037120 212 KGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL--ELSTG---------------SHGTLNSIQLHAENQIIFAA 274 (489)
Q Consensus 212 ~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~---------------h~~~v~~~~~~p~~~~l~~~ 274 (489)
.-|++|..+.|++.+.+++=.+|.|+-||+.....+.+ +...+ -.+...-+.+|-||+.|+.+
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 46899999999995556666999999999998766522 11111 01233567777777777766
Q ss_pred e
Q 037120 275 G 275 (489)
Q Consensus 275 ~ 275 (489)
.
T Consensus 392 n 392 (461)
T PF05694_consen 392 N 392 (461)
T ss_dssp -
T ss_pred e
Confidence 4
No 392
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.15 E-value=7.2 Score=36.19 Aligned_cols=154 Identities=13% Similarity=0.137 Sum_probs=75.1
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..+..+..+++|+++|++..-....-||--.. ...++... ....|.++.|.|++. +.+.+.
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~------------~w~~~~r~-----~~~riq~~gf~~~~~-lw~~~~- 205 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQT------------TWQPHNRN-----SSRRIQSMGFSPDGN-LWMLAR- 205 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-S------------S-EEEE-------SSS-EEEEEE-TTS--EEEEET-
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCc------------cceEEccC-----ccceehhceecCCCC-EEEEeC-
Confidence 34888889999999999877766677775531 11111111 112299999999965 555554
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc---
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST--- 253 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--- 253 (489)
+|.|+.=+.... ........ .....-.-.+.+++|.+++. ..++|+ .|.+. .....++ ..+...
T Consensus 206 -Gg~~~~s~~~~~----~~~w~~~~---~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l~-~S~DgGk--tW~~~~~~~ 272 (302)
T PF14870_consen 206 -GGQIQFSDDPDD----GETWSEPI---IPIKTNGYGILDLAYRPPNE-IWAVGG-SGTLL-VSTDGGK--TWQKDRVGE 272 (302)
T ss_dssp -TTEEEEEE-TTE----EEEE---B----TTSS--S-EEEEEESSSS--EEEEES-TT-EE-EESSTTS--S-EE-GGGT
T ss_pred -CcEEEEccCCCC----cccccccc---CCcccCceeeEEEEecCCCC-EEEEeC-CccEE-EeCCCCc--cceECcccc
Confidence 489888872111 01111100 00011123578999998877 666555 55443 3333333 222221
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEE
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLW 283 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lw 283 (489)
.-..-++.+.|.+.. .-++-+.+|.|--|
T Consensus 273 ~~~~n~~~i~f~~~~-~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 273 NVPSNLYRIVFVNPD-KGFVLGQDGVLLRY 301 (302)
T ss_dssp TSSS---EEEEEETT-EEEEE-STTEEEEE
T ss_pred CCCCceEEEEEcCCC-ceEEECCCcEEEEe
Confidence 223457888897654 45666778877654
No 393
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.02 E-value=0.39 Score=29.43 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=25.8
Q ss_pred CeeEEEEecCCC--cEEEEEeCCCcEEEEECCC
Q 037120 213 GLSDLAFSAVNT--SRLIASDTHGVVNIWDRRV 243 (489)
Q Consensus 213 ~v~~~~~~~~~~--~~l~s~s~dg~i~iwd~~~ 243 (489)
.|.+++|+|... .+|+-+-.-|.|.|+|+|+
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 688999997544 5788777889999999996
No 394
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.00 E-value=6.2 Score=35.03 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=52.4
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee
Q 037120 217 LAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 217 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~ 295 (489)
+...++.+.+++.|+..+.+.--|..+++.. ++... ...|.+-+.- -|++++.|+..|.+++.+..+|.....+.
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~-We~il--g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~ 90 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLI-WEAIL--GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFV 90 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEE-eehhh--CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeee
Confidence 3445566658888999999999999988632 22222 3444444333 57789999999999999999987554444
No 395
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.95 E-value=2.5 Score=43.22 Aligned_cols=120 Identities=16% Similarity=0.163 Sum_probs=67.7
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEee--CCCCCEEEEEe
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWN--LANQDEVACAS 175 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~--~~~~~~l~s~~ 175 (489)
...-+.-|.-++.-++-+....+.|||.........+ .+ ..... |.+++|. |+++.+++.|-
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~------------~f-~~~~~---I~dLDWtst~d~qsiLaVGf 94 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE------------SF-SEDDP---IRDLDWTSTPDGQSILAVGF 94 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEee------------ee-cCCCc---eeeceeeecCCCCEEEEEEc
Confidence 3444444444444444444568999999885433221 11 11122 8889995 77877777777
Q ss_pred cCCCEEEEEEec-c--CCCCCceeeeeceeeeeecCCcc-cCeeEEEEecCCCcEEEEEeCCCcEEEEECC
Q 037120 176 TRSNVVSIYDIG-Y--ISDEPVEVLKTRRSVTVVGSDVQ-KGLSDLAFSAVNTSRLIASDTHGVVNIWDRR 242 (489)
Q Consensus 176 ~d~g~i~vwd~~-~--~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 242 (489)
.+.|.+|--. . ....| ...+.+.... ..|+ .+|.+..|.++|. +++.+ ++.+.|+|-.
T Consensus 95 --~~~v~l~~Q~R~dy~~~~p--~w~~i~~i~i--~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 95 --PHHVLLYTQLRYDYTNKGP--SWAPIRKIDI--SSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDKW 156 (631)
T ss_pred --CcEEEEEEccchhhhcCCc--ccceeEEEEe--ecCCCCCccceeEecCCe-EEEEe--CCEEEEECCC
Confidence 5799988542 1 11111 1112222111 3333 5789999999997 44444 4688888754
No 396
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.65 E-value=10 Score=34.37 Aligned_cols=113 Identities=9% Similarity=0.089 Sum_probs=64.5
Q ss_pred eeEEEeeCCCCCEEEEEe-cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcE
Q 037120 158 LDAVRWNLANQDEVACAS-TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVV 236 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~-~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i 236 (489)
+.+.+++++++.+.+... .+...+.++.. .... ..+. .+ ..+..-.|.+++. ..+....+...
T Consensus 26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~--~~~~---------~g--~~l~~PS~d~~g~-~W~v~~~~~~~ 89 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPV--RPVL---------TG--GSLTRPSWDPDGW-VWTVDDGSGGV 89 (253)
T ss_pred ccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcc--eeec---------cC--CccccccccCCCC-EEEEEcCCCce
Confidence 778999999875544441 22245555544 2111 1110 11 2567778999976 55555556666
Q ss_pred EEEE-CCCCCcCceeeccCCC-CceeEEEEeecCCEEEEEeC---CCeEEEEEcC
Q 037120 237 NIWD-RRVGVLPSLELSTGSH-GTLNSIQLHAENQIIFAAGK---HGSIYLWDLR 286 (489)
Q Consensus 237 ~iwd-~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~~~~~---dg~i~lwd~~ 286 (489)
+++. ...+.......-.... ..|.++.++|||..++.... ++.|.+=-+.
T Consensus 90 ~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 90 RVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred EEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 6663 3333322222211111 28999999999998777753 5677766543
No 397
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=91.46 E-value=12 Score=34.91 Aligned_cols=97 Identities=14% Similarity=0.117 Sum_probs=60.5
Q ss_pred ccCeeEEEEecCCCcEEEEEeCCCcEEEEECCC--C---CcCceeeccCCCCceeEEEEeecCCEEEEEeCCC-eEEEEE
Q 037120 211 QKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV--G---VLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHG-SIYLWD 284 (489)
Q Consensus 211 ~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~---~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg-~i~lwd 284 (489)
-..-+.|+|+||++.++++=+..+.|.-|++.. + ............+..-.++...+|.+-+++..+| .|.+|+
T Consensus 162 ~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence 345678999999984444445668888887752 1 1111112222345556778888888765554444 889998
Q ss_pred cCCCcccceeecCCccCCCCeeEEEeCC
Q 037120 285 LRGGRTSAPFHNHKEVCHLPLTSLKLAS 312 (489)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 312 (489)
.. |+.+..+...... +++++|--
T Consensus 242 pd-G~l~~~i~lP~~~----~t~~~FgG 264 (307)
T COG3386 242 PD-GKLLGEIKLPVKR----PTNPAFGG 264 (307)
T ss_pred CC-CcEEEEEECCCCC----CccceEeC
Confidence 88 7777776654433 66666543
No 398
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.00 E-value=8.6 Score=40.47 Aligned_cols=91 Identities=9% Similarity=0.069 Sum_probs=55.3
Q ss_pred CCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCC------Cceeeeeceeeee-e--cCCcccCeeEEEEecCC-
Q 037120 154 LPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDE------PVEVLKTRRSVTV-V--GSDVQKGLSDLAFSAVN- 223 (489)
Q Consensus 154 ~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~------~~~~~~~~~~~~~-~--~~~h~~~v~~~~~~~~~- 223 (489)
..+.|..|..||++..+.+.|. ..|.|-.+...-+. ....+.+....+. . ...+...|..+.|+|.+
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~---~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~ 159 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGP---RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE 159 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcC---CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC
Confidence 3456999999999975555555 56666666321000 0011111111000 0 13456789999999985
Q ss_pred -CcEEEEEeCCCcEEEEECCCCCcC
Q 037120 224 -TSRLIASDTHGVVNIWDRRVGVLP 247 (489)
Q Consensus 224 -~~~l~s~s~dg~i~iwd~~~~~~~ 247 (489)
..+|+.-..|+++++||+.....+
T Consensus 160 ~~~~l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 160 SDSHLVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred CCCeEEEEecCCEEEEEecCCCCCC
Confidence 237788888999999999865544
No 399
>PHA02713 hypothetical protein; Provisional
Probab=90.12 E-value=3.8 Score=41.97 Aligned_cols=65 Identities=8% Similarity=0.076 Sum_probs=38.6
Q ss_pred CCCcEEEEEeCC------CcEEEEECCC-CCcCceeeccCCCCceeEEEEeecCCEEEEEeCCC--eEEEEEcCCCc
Q 037120 222 VNTSRLIASDTH------GVVNIWDRRV-GVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHG--SIYLWDLRGGR 289 (489)
Q Consensus 222 ~~~~~l~s~s~d------g~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg--~i~lwd~~~~~ 289 (489)
++. +.+.|+.+ ..+..||..+ .++..+..+.........+.+ +|.+.++||.|| .+-.||..+.+
T Consensus 463 ~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 463 KDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 455 66767654 2467899998 554433222222222233333 677788888887 67778877754
No 400
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.90 E-value=0.059 Score=51.51 Aligned_cols=135 Identities=16% Similarity=0.232 Sum_probs=93.7
Q ss_pred EEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 037120 161 VRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD 240 (489)
Q Consensus 161 v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd 240 (489)
..|-+.+.++++++. +..+..||-.. +..... .-+....+++|..+++-.++.+-..+.+.+||
T Consensus 40 ~~w~~e~~nlavaca--~tiv~~YD~ag------q~~le~--------n~tg~aldm~wDkegdvlavlAek~~piylwd 103 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACA--NTIVIYYDKAG------QVILEL--------NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWD 103 (615)
T ss_pred eeEecCCCceehhhh--hhHHHhhhhhc------ceeccc--------CCchhHhhhhhccccchhhhhhhcCCCeeech
Confidence 578888877766666 46888888621 111111 12235567888888874556666789999999
Q ss_pred CCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 241 RRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
+.+.....+..-..|.... +.|++....++.+-..|.+.|++..+.+.+..+..|... +++++|.+.+..+
T Consensus 104 ~n~eytqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RR----gtq~av~lEd~vi 174 (615)
T KOG2247|consen 104 VNSEYTQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRR----GTQIAVTLEDYVI 174 (615)
T ss_pred hhhhhHHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccc----eeEEEecccceee
Confidence 9886533333322333333 789999999999888999999999887766555557766 9999999988766
No 401
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=89.83 E-value=24 Score=35.60 Aligned_cols=60 Identities=20% Similarity=0.180 Sum_probs=35.5
Q ss_pred cEEEEECCCCCcCceeec-cCCCC----ceeEEEEe----ecCC---EEEEEeCCCeEEEEEcCCCcccceee
Q 037120 235 VVNIWDRRVGVLPSLELS-TGSHG----TLNSIQLH----AENQ---IIFAAGKHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~-~~h~~----~v~~~~~~----p~~~---~l~~~~~dg~i~lwd~~~~~~~~~~~ 295 (489)
.|.-+|..+++.. .+.. ..|.. ......+. -++. .+++++.+|.+...|.++|+.+-...
T Consensus 257 ~l~Ald~~tG~~~-W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 257 SIVALDADTGKVK-WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred eEEEEcCCCCCEE-EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 7999999988743 2221 11210 10111111 1233 57778889999999999998755543
No 402
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.13 E-value=3.1 Score=36.69 Aligned_cols=67 Identities=18% Similarity=0.293 Sum_probs=46.9
Q ss_pred EecCCCcEEEEEeCCCcEEEEECCCCCcCc-----eeecc-------CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 037120 219 FSAVNTSRLIASDTHGVVNIWDRRVGVLPS-----LELST-------GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLR 286 (489)
Q Consensus 219 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-----~~~~~-------~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~ 286 (489)
+...+. ++++.+.+|.+++||+.+.+... ...+. .....|..+.++.+|.-+++-+ +|..+.||..
T Consensus 18 l~~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 344566 78889999999999999875221 01111 2456788899998888766554 5788999876
Q ss_pred C
Q 037120 287 G 287 (489)
Q Consensus 287 ~ 287 (489)
-
T Consensus 96 L 96 (219)
T PF07569_consen 96 L 96 (219)
T ss_pred c
Confidence 4
No 403
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.78 E-value=2.7 Score=37.10 Aligned_cols=75 Identities=15% Similarity=0.114 Sum_probs=47.9
Q ss_pred EECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCccccccc---ccCCCCCCceeEEEeeCCCCCEEEEEecCCC
Q 037120 103 DFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKH---LLHIPLPQQLDAVRWNLANQDEVACASTRSN 179 (489)
Q Consensus 103 ~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~---~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g 179 (489)
.+..++.+|++-+.+|.++|||+.+.+...... .+.+-... ... .....|..+..+.+|. -+++-+ +|
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~-----Si~pll~~~~~~~~-~~~~~i~~~~lt~~G~-PiV~ls--ng 87 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPV-----SIAPLLNSSPVSDK-SSSPNITSCSLTSNGV-PIVTLS--NG 87 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCc-----cHHHHhcccccccC-CCCCcEEEEEEcCCCC-EEEEEe--CC
Confidence 356788999999999999999999976654321 01110000 000 2223388888887775 455555 47
Q ss_pred EEEEEEe
Q 037120 180 VVSIYDI 186 (489)
Q Consensus 180 ~i~vwd~ 186 (489)
....|+.
T Consensus 88 ~~y~y~~ 94 (219)
T PF07569_consen 88 DSYSYSP 94 (219)
T ss_pred CEEEecc
Confidence 8899987
No 404
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.01 E-value=6.6 Score=38.20 Aligned_cols=87 Identities=18% Similarity=0.312 Sum_probs=55.8
Q ss_pred cCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeE-EEE-eec----------------C
Q 037120 207 GSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNS-IQL-HAE----------------N 268 (489)
Q Consensus 207 ~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~-~~~-~p~----------------~ 268 (489)
+......+.+|..+|.+. +.++...=|.|.++|+.++. .++..++-.+.-.. +.. .+. .
T Consensus 303 l~D~~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~--vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGR-LAAVTDSLGRVLLIDVARGI--VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred eccCCceEEEEEECCCCC-EEEEEcCCCcEEEEECCCCh--hhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence 345566788999999988 77777777999999999876 55555433322110 000 000 1
Q ss_pred CE-EEEEeCCCeEEEEEcCCCcccceeec
Q 037120 269 QI-IFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 269 ~~-l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
.+ ++-+-..|.|-||.+++|..+..+..
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 12 23334489999999999887666653
No 405
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=87.89 E-value=27 Score=35.20 Aligned_cols=64 Identities=19% Similarity=0.243 Sum_probs=39.1
Q ss_pred CCCcEEEEECCCCCcCceeeccC-CC------CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 232 THGVVNIWDRRVGVLPSLELSTG-SH------GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 232 ~dg~i~iwd~~~~~~~~~~~~~~-h~------~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
.+|.|.-.|+.+++.. .+.... +. .+...-...-.+..+++++.||.|+.+|.++|+.+-.++.
T Consensus 364 ~~G~l~AlD~~tG~~~-W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 364 GKGGLAALDPKTGKVV-WEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CceEEEEEeCCCCcEe-eEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 4577888888887632 211111 00 1111111123567889999999999999999988666553
No 406
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=87.83 E-value=20 Score=34.51 Aligned_cols=107 Identities=14% Similarity=0.102 Sum_probs=54.9
Q ss_pred eeEEEeeCCCCCEEEEEe-----------cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcE
Q 037120 158 LDAVRWNLANQDEVACAS-----------TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSR 226 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~-----------~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 226 (489)
...++|.+++. ++++.. .....|.+++-........+ ...+ .......+.+++.+++ +
T Consensus 16 P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~----~~vf----a~~l~~p~Gi~~~~~G--l 84 (367)
T TIGR02604 16 PIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDK----SNVF----AEELSMVTGLAVAVGG--V 84 (367)
T ss_pred CceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcce----eEEe----ecCCCCccceeEecCC--E
Confidence 56699999985 555532 11127777765333222111 1112 1112245778888776 4
Q ss_pred EEEEeCCCcEEEEECCCC-----CcC-ceeeccC----CCCceeEEEEeecCCEEEEEeC
Q 037120 227 LIASDTHGVVNIWDRRVG-----VLP-SLELSTG----SHGTLNSIQLHAENQIIFAAGK 276 (489)
Q Consensus 227 l~s~s~dg~i~iwd~~~~-----~~~-~~~~~~~----h~~~v~~~~~~p~~~~l~~~~~ 276 (489)
+++ ......++.|.... +.. .+..+.. +....+.++|.|+|.+.++-+.
T Consensus 85 yV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~ 143 (367)
T TIGR02604 85 YVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGN 143 (367)
T ss_pred EEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEeccc
Confidence 454 33443344455321 111 2222211 2345778999999987776663
No 407
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=87.56 E-value=28 Score=35.02 Aligned_cols=127 Identities=13% Similarity=0.117 Sum_probs=70.6
Q ss_pred CCceeEEEECCCC----cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCce--eEEEeeCCCCC
Q 037120 96 KPGISALDFDCKG----IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQL--DAVRWNLANQD 169 (489)
Q Consensus 96 ~~~V~~~~fs~~g----~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V--~~v~~~~~~~~ 169 (489)
.+-|..+.|.|-+ ..|.+......|.||.+......... .+.. .+.+..+.++| ..+.|+|...
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K------~l~s---QtcEi~e~~pvLpQGCVWHPk~~- 125 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNK------LLMS---QTCEIREPFPVLPQGCVWHPKKA- 125 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcccccc------ceee---eeeeccCCcccCCCcccccCCCc-
Confidence 3568999999863 24555666788999988742211110 0000 01111111111 1278999876
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVG 244 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 244 (489)
+|+.-... ..-.+++++..... +-.. ..-.+-|.+.+|.+||+.++++.+..=.-++||-...
T Consensus 126 iL~VLT~~-dvSV~~sV~~d~sr---VkaD--------i~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 126 ILTVLTAR-DVSVLPSVHCDSSR---VKAD--------IKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred eEEEEecC-ceeEeeeeeeCCce---EEEe--------ccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 55444433 24456666443322 1111 1234589999999999966666665555678986553
No 408
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=87.29 E-value=22 Score=32.09 Aligned_cols=160 Identities=16% Similarity=0.064 Sum_probs=86.1
Q ss_pred eeEEEECCCCcEEEEEecCC--eEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 99 ISALDFDCKGIYLVSATRSG--CLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg--~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
...+.|..+|.++-+.+.-| .|+.+|+.+++..... ..+..-+ +.+ ++...+ .+..-...
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~-------~l~~~~F------gEG---it~~~d--~l~qLTWk 108 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV-------PLPPRYF------GEG---ITILGD--KLYQLTWK 108 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE-------E-TTT--------EEE---EEEETT--EEEEEESS
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE-------ECCcccc------cee---EEEECC--EEEEEEec
Confidence 67888988898888888766 7899999986544321 0000001 122 344333 36666666
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-ceeecc--
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SLELST-- 253 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~-- 253 (489)
+ +...+||... ++....+.. . ..=+.++ .++. .|+.+.....++++|..+-+.. .++...
T Consensus 109 ~-~~~f~yd~~t--------l~~~~~~~y--~---~EGWGLt--~dg~-~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g 171 (264)
T PF05096_consen 109 E-GTGFVYDPNT--------LKKIGTFPY--P---GEGWGLT--SDGK-RLIMSDGSSRLYFLDPETFKEVRTIQVTDNG 171 (264)
T ss_dssp S-SEEEEEETTT--------TEEEEEEE---S---SS--EEE--ECSS-CEEEE-SSSEEEEE-TTT-SEEEEEE-EETT
T ss_pred C-CeEEEEcccc--------ceEEEEEec--C---CcceEEE--cCCC-EEEEECCccceEEECCcccceEEEEEEEECC
Confidence 6 9999999932 222222211 2 2335565 4677 5666666789999998765422 111111
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCccccee
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPF 294 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~ 294 (489)
..-..++-+.+- +|...+=.=....|...|..+|+....+
T Consensus 172 ~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 172 RPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp EE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEE
T ss_pred EECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEE
Confidence 111345667775 4543333333667777888888764433
No 409
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.85 E-value=14 Score=29.36 Aligned_cols=118 Identities=16% Similarity=0.147 Sum_probs=66.6
Q ss_pred EEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeC----CCCCEEEEEec
Q 037120 101 ALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNL----ANQDEVACAST 176 (489)
Q Consensus 101 ~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~----~~~~~l~s~~~ 176 (489)
.-.|+.....|++++.-|.|.|++......... .......+.--... |++++--+ +....|+.|+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~-------~~~~~i~~LNin~~---italaaG~l~~~~~~D~LliGt- 71 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTG-------RQDSDISFLNINQE---ITALAAGRLKPDDGRDCLLIGT- 71 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccc-------cccCceeEEECCCc---eEEEEEEecCCCCCcCEEEEec-
Confidence 346777888899999999999998876332221 01111111111223 66665433 2345788888
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC--cEEEEEeCCCcEEEEECCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT--SRLIASDTHGVVNIWDRRV 243 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~s~s~dg~i~iwd~~~ 243 (489)
...+..||+.....- | ..+-.+.|+++.+-.-+. .-++..+....|.-+|..-
T Consensus 72 -~t~llaYDV~~N~d~----------F---yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 72 -QTSLLAYDVENNSDL----------F---YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred -cceEEEEEcccCchh----------h---hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 569999999433211 1 022335777777643221 1244444467777777654
No 410
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.75 E-value=2.8 Score=25.31 Aligned_cols=31 Identities=6% Similarity=0.179 Sum_probs=24.5
Q ss_pred ecCCEEEEEeC-CCeEEEEEcCCCcccceeec
Q 037120 266 AENQIIFAAGK-HGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 266 p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~ 296 (489)
|+++.++++.. +++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 57788888765 89999999988877666654
No 411
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=86.70 E-value=12 Score=36.82 Aligned_cols=151 Identities=16% Similarity=0.219 Sum_probs=81.5
Q ss_pred EeecCCEEEEEeC-CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccce--eeccceeEEEeCCCC
Q 037120 264 LHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSK--IVSQEIHSIDLDPSC 340 (489)
Q Consensus 264 ~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~--~~~~~i~~~~~~p~~ 340 (489)
.+.+..+++..+. ...++-.|+..|+.+..+..|... -+.|.|+...-.-...+.. .....|..++-...|
T Consensus 475 h~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv------vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g 548 (776)
T COG5167 475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV------VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG 548 (776)
T ss_pred ecCCcceEEecCCCcccceeeecccceeeeEeecCCcc------eeecCCchhHHhcCccceEEeecccceEEecccccC
Confidence 3445556665554 677888899999999888876533 5667776533211111111 112233333222222
Q ss_pred CeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCC
Q 037120 341 SYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSP 420 (489)
Q Consensus 341 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~ 420 (489)
..+.+- ......++ ..|+.. ..+..-|++.||..|.|++||--..
T Consensus 549 NKi~v~-----------esKdY~tK-----n~Fss~---------------~tTesGyIa~as~kGDirLyDRig~---- 593 (776)
T COG5167 549 NKIKVV-----------ESKDYKTK-----NKFSSG---------------MTTESGYIAAASRKGDIRLYDRIGK---- 593 (776)
T ss_pred Cceeee-----------eehhcccc-----cccccc---------------ccccCceEEEecCCCceeeehhhcc----
Confidence 222211 11111111 011111 1112568888999999999997655
Q ss_pred eeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEE
Q 037120 421 SHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLV 474 (489)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v 474 (489)
+....++ +..+.|..+....+|.+|++.-. ..|.+
T Consensus 594 ------rAKtalP------------~lG~aIk~idvta~Gk~ilaTCk-~yllL 628 (776)
T COG5167 594 ------RAKTALP------------GLGDAIKHIDVTANGKHILATCK-NYLLL 628 (776)
T ss_pred ------hhhhcCc------------ccccceeeeEeecCCcEEEEeec-ceEEE
Confidence 3333444 67788999999999986655444 34444
No 412
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.70 E-value=3.1 Score=42.71 Aligned_cols=73 Identities=18% Similarity=0.281 Sum_probs=44.0
Q ss_pred CCCcEEEEEeCCCcEEEEECCC---CCcCcee-ecc--------------------CCCCceeEEEEee----cCCEEEE
Q 037120 222 VNTSRLIASDTHGVVNIWDRRV---GVLPSLE-LST--------------------GSHGTLNSIQLHA----ENQIIFA 273 (489)
Q Consensus 222 ~~~~~l~s~s~dg~i~iwd~~~---~~~~~~~-~~~--------------------~h~~~v~~~~~~p----~~~~l~~ 273 (489)
+.. .|+.+..||.+...+... ....... .+. .....+.++++++ +..++++
T Consensus 157 ~~~-~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 157 SEA-NLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp SSS-BEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred CCC-EEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 444 777778899888877664 1110000 000 0123455667766 7789999
Q ss_pred EeCCCeEEEEEcCCCcccceee
Q 037120 274 AGKHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 274 ~~~dg~i~lwd~~~~~~~~~~~ 295 (489)
.+.|+++|+||+.+++++.++.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999865553
No 413
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=86.16 E-value=52 Score=35.26 Aligned_cols=129 Identities=16% Similarity=0.091 Sum_probs=72.8
Q ss_pred cCeeEEEEec------CCCcEEEEEeC----CCcEEEEECCCCCcCceeecc------------------------CCCC
Q 037120 212 KGLSDLAFSA------VNTSRLIASDT----HGVVNIWDRRVGVLPSLELST------------------------GSHG 257 (489)
Q Consensus 212 ~~v~~~~~~~------~~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~------------------------~h~~ 257 (489)
..++.+.|-+ ..+..+++.+. ...|.-|.++......-..+. ....
T Consensus 181 ~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~ 260 (753)
T PF11635_consen 181 YQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNK 260 (753)
T ss_pred ccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCC
Confidence 4677788876 22234555542 346889988764321110000 1124
Q ss_pred ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCccccee-ecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEe
Q 037120 258 TLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPF-HNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDL 336 (489)
Q Consensus 258 ~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 336 (489)
.|.+++....+..++.+-.||+|.++|-.+.+.+... ...... ..|+++. ..|=.+. ....+..++|
T Consensus 261 ~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~--~~v~s~~--~~Gf~fp--------~~~~~~~vaf 328 (753)
T PF11635_consen 261 RVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPP--NTVTSLF--QAGFHFP--------CIQPPLHVAF 328 (753)
T ss_pred eEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCc--ccccccc--ccccccc--------cCCCCceEEE
Confidence 5677777777888888899999999999988765554 111111 1122220 0110111 0115567889
Q ss_pred CCCCCeEEEEEecCCc
Q 037120 337 DPSCSYQLAFHLDDGW 352 (489)
Q Consensus 337 ~p~~~~~~~~~~~~~w 352 (489)
||++.-++....++..
T Consensus 329 SPt~c~~v~~~~~~~~ 344 (753)
T PF11635_consen 329 SPTMCSLVQIDEDGKT 344 (753)
T ss_pred CcccceEEEEecCCCc
Confidence 9998877776666553
No 414
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=86.09 E-value=20 Score=36.89 Aligned_cols=151 Identities=13% Similarity=0.078 Sum_probs=79.4
Q ss_pred CCCCcEEEEEecCC------eEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 105 DCKGIYLVSATRSG------CLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 105 s~~g~~la~g~~dg------~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
+..+.+++.|+.++ .+..||..+..-.... ..+.. .. -.+++...+ .+.++|+.|+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a-------~m~~~------r~---~~~~~~~~~--~lYv~GG~~~ 343 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLA-------PMPSP------RC---RVGVAVLNG--KLYVVGGYDS 343 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecC-------CCCcc------cc---cccEEEECC--EEEEEccccC
Confidence 44567778888774 5778888774222210 01111 11 223555444 4778887773
Q ss_pred -----CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCc-----EEEEECCCCCcCc
Q 037120 179 -----NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGV-----VNIWDRRVGVLPS 248 (489)
Q Consensus 179 -----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~-----i~iwd~~~~~~~~ 248 (489)
.++..||...........+...+ +...+..+ +|. +.+.|+.||. |-.||.++.++..
T Consensus 344 ~~~~l~~ve~YD~~~~~W~~~a~M~~~R--------~~~~v~~l----~g~-iYavGG~dg~~~l~svE~YDp~~~~W~~ 410 (571)
T KOG4441|consen 344 GSDRLSSVERYDPRTNQWTPVAPMNTKR--------SDFGVAVL----DGK-LYAVGGFDGEKSLNSVECYDPVTNKWTP 410 (571)
T ss_pred CCcccceEEEecCCCCceeccCCccCcc--------ccceeEEE----CCE-EEEEeccccccccccEEEecCCCCcccc
Confidence 46778887544322211111111 11222222 466 8888888864 7789998876543
Q ss_pred eeeccCCCCceeEEEE-eecCCEEEEEeCCC------eEEEEEcCCCc
Q 037120 249 LELSTGSHGTLNSIQL-HAENQIIFAAGKHG------SIYLWDLRGGR 289 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~-~p~~~~l~~~~~dg------~i~lwd~~~~~ 289 (489)
+... ......... .-+|...++||.++ ++..||..+.+
T Consensus 411 va~m---~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 411 VAPM---LTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred cCCC---CcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence 3211 112222222 23677777777543 56678877654
No 415
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=85.59 E-value=56 Score=35.13 Aligned_cols=185 Identities=11% Similarity=0.085 Sum_probs=103.0
Q ss_pred CCCceeEEEEC---C----CCcEEEEEecCCeEEEEeCCCccccc--CCCCCCCCCcccc--cccccCCCCCCceeEEEe
Q 037120 95 GKPGISALDFD---C----KGIYLVSATRSGCLTVHDFESLYYQC--NGTLPGVGLKEDQ--SKHLLHIPLPQQLDAVRW 163 (489)
Q Consensus 95 ~~~~V~~~~fs---~----~g~~la~g~~dg~i~vwd~~~~~~~~--~~~~~~~g~~~~~--~~~~~h~~~~~~V~~v~~ 163 (489)
....|..|.|. . ..++|++=. ...+.|+...-.+... .... +.+.+. ..+..+...+.....|+|
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~---s~i~~~~l~~i~~~~tgg~~~aDv~F 153 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRP---SRIDPNPLLTISSSDTGGFPHADVAF 153 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCc---cccccceeEEechhhcCCCccceEEe
Confidence 33558889998 2 124555544 5578888743322200 0000 011111 112223335556778999
Q ss_pred eCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeec---CCcccCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 037120 164 NLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVG---SDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD 240 (489)
Q Consensus 164 ~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd 240 (489)
+|.....|+..... |...|||+..........+.........+ ......-..|.|.++.. .|+.++ ...+.++|
T Consensus 154 nP~~~~q~AiVD~~-G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~-~lLv~~-r~~l~~~d 230 (765)
T PF10214_consen 154 NPWDQRQFAIVDEK-GNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN-RLLVCN-RSKLMLID 230 (765)
T ss_pred ccCccceEEEEecc-CcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCC-EEEEEc-CCceEEEE
Confidence 99988899999988 99999999221111111111111000000 11124455788988877 677666 46788999
Q ss_pred CCCCCcCceeeccCCCCceeEEEEeec--CCEEEEEeCCCeEEEEEcCCC
Q 037120 241 RRVGVLPSLELSTGSHGTLNSIQLHAE--NQIIFAAGKHGSIYLWDLRGG 288 (489)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~l~~~~~dg~i~lwd~~~~ 288 (489)
+++......-........|..+.-+|. +..++.++ ..|.+.|+...
T Consensus 231 ~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~~ 278 (765)
T PF10214_consen 231 FESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKSS 278 (765)
T ss_pred CCCCCccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccCC
Confidence 998754221112234567888888887 33333333 57888888873
No 416
>PRK13684 Ycf48-like protein; Provisional
Probab=85.24 E-value=35 Score=32.42 Aligned_cols=152 Identities=13% Similarity=0.130 Sum_probs=77.4
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEE-EeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTV-HDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~v-wd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
.+.++.+.+++.++++|. .|.+.. +|-... ..... .......+.++.+.+++. +++.+.
T Consensus 174 ~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~------------tW~~~-----~~~~~~~l~~i~~~~~g~-~~~vg~- 233 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQT------------AWTPH-----QRNSSRRLQSMGFQPDGN-LWMLAR- 233 (334)
T ss_pred eEEEEEECCCCeEEEEeC-CceEEEEcCCCCC------------eEEEe-----eCCCcccceeeeEcCCCC-EEEEec-
Confidence 388999999987776665 454432 221110 01110 011112278899999875 555555
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc---
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST--- 253 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--- 253 (489)
.|.+++=....+ ......... ...-...+.++.+.+++. . +.++.+|.|.. -...++ ..+...
T Consensus 234 -~G~~~~~s~d~G-----~sW~~~~~~---~~~~~~~l~~v~~~~~~~-~-~~~G~~G~v~~-S~d~G~--tW~~~~~~~ 299 (334)
T PRK13684 234 -GGQIRFNDPDDL-----ESWSKPIIP---EITNGYGYLDLAYRTPGE-I-WAGGGNGTLLV-SKDGGK--TWEKDPVGE 299 (334)
T ss_pred -CCEEEEccCCCC-----CccccccCC---ccccccceeeEEEcCCCC-E-EEEcCCCeEEE-eCCCCC--CCeECCcCC
Confidence 477653211111 111100000 000123578889998776 4 45556776653 333333 222221
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEE
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWD 284 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd 284 (489)
.-....+.+.|..+++. ++.|..|.|--|+
T Consensus 300 ~~~~~~~~~~~~~~~~~-~~~G~~G~il~~~ 329 (334)
T PRK13684 300 EVPSNFYKIVFLDPEKG-FVLGQRGVLLRYV 329 (334)
T ss_pred CCCcceEEEEEeCCCce-EEECCCceEEEec
Confidence 11235777887766655 6667788887765
No 417
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=85.01 E-value=40 Score=32.97 Aligned_cols=160 Identities=9% Similarity=0.076 Sum_probs=90.2
Q ss_pred CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEee---CC-CCCEEEEEecCCCEEE
Q 037120 107 KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWN---LA-NQDEVACASTRSNVVS 182 (489)
Q Consensus 107 ~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~---~~-~~~~l~s~~~d~g~i~ 182 (489)
+...|++|+..|.++||+......... .......-..+|..+..- +. ....|+.-. -..+.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~-------------~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLh--P~kl~ 100 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPE-------------DLLLETQLKDPILQVECGKFVSGSEDLQLAVLH--PRKLS 100 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCc-------------cEEEEEecCCcEEEEEeccccCCCCcceEEEec--CCEEE
Confidence 347899999999999999855322221 111111112225556543 32 233555544 48999
Q ss_pred EEEeccCCCC--CceeeeeceeeeeecCCcccCeeEEEEecCC----CcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 183 IYDIGYISDE--PVEVLKTRRSVTVVGSDVQKGLSDLAFSAVN----TSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 183 vwd~~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
||.+....+. ..........+.+.+.. ....+++-|-| ..+++.-+.||.+.+++-+.-. ...+...-
T Consensus 101 vY~v~~~~g~~~~g~~~~L~~~yeh~l~~---~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~---f~~~lp~~ 174 (418)
T PF14727_consen 101 VYSVSLVDGTVEHGNQYQLELIYEHSLQR---TAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA---FSRFLPDF 174 (418)
T ss_pred EEEEEecCCCcccCcEEEEEEEEEEeccc---ceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE---EEEEcCCC
Confidence 9999432221 11112212222222222 33333333322 3588889999999999876532 12222221
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
--...+++.+.-+.+++++.+..|.-|....
T Consensus 175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred CCCcCeEEeecCCEEEEecCceeEEEecHHH
Confidence 2223678999999999999999999887643
No 418
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.99 E-value=25 Score=30.55 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=34.7
Q ss_pred CEEEEEeCCCeEEEEEcCCCcc--cceeecCCccCCCCeeEEEeCCCCcceeecccc
Q 037120 269 QIIFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQ 323 (489)
Q Consensus 269 ~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~ 323 (489)
+.|+.+.....|.+||+.+..+ +..|..- +. |..+.++..|.+++++...
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~----V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GR----VLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hh----eeEEEeccccceEEEEEee
Confidence 5666656677899999984333 5555542 34 8888888888888876533
No 419
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=84.79 E-value=1 Score=46.72 Aligned_cols=130 Identities=9% Similarity=0.140 Sum_probs=75.1
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCC--CceeeeeceeeeeecCCcccCeeEEEEecCCC--cEEEEEeCC
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDE--PVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT--SRLIASDTH 233 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~s~s~d 233 (489)
|..++|.......+. - +-|.+.|||+..-.++ +.-.+.....+ ...+.-|.|+|--. .++..+-.+
T Consensus 135 v~dl~fah~~~pk~~--~-~vg~lfVy~vd~l~G~iq~~l~v~~~~p~-------gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 135 VGDLQFAHTKCPKGR--R-LVGELFVYDVDVLQGEIQPQLEVTPITPY-------GSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred cccccccccCChHHH--H-HhhhhheeehHhhccccccceEEeecCcC-------CCCcceeeecccccccceeeeccCC
Confidence 455777543322333 2 2388999998642222 11222222211 12335566665322 266666788
Q ss_pred CcEEEEECCCCCcCceeeccCCCCceeEE-----------EEeecCCEEEEEeCCCeEEEEEcC-----CCcccceeecC
Q 037120 234 GVVNIWDRRVGVLPSLELSTGSHGTLNSI-----------QLHAENQIIFAAGKHGSIYLWDLR-----GGRTSAPFHNH 297 (489)
Q Consensus 234 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~-----------~~~p~~~~l~~~~~dg~i~lwd~~-----~~~~~~~~~~~ 297 (489)
+.|++....+... ..+.+|...+..+ .++|||..++.++.||.++.|.+. ..+++..++.|
T Consensus 205 ~~i~lL~~~ra~~---~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph 281 (1283)
T KOG1916|consen 205 GEIRLLNINRALR---SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH 281 (1283)
T ss_pred CceeEeeechHHH---HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence 8998877665432 3344566554433 368999999999999988877653 44557777777
Q ss_pred Ccc
Q 037120 298 KEV 300 (489)
Q Consensus 298 ~~~ 300 (489)
.+.
T Consensus 282 d~~ 284 (1283)
T KOG1916|consen 282 DKH 284 (1283)
T ss_pred CCC
Confidence 643
No 420
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.70 E-value=0.16 Score=48.67 Aligned_cols=141 Identities=13% Similarity=0.111 Sum_probs=91.3
Q ss_pred EEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEE
Q 037120 102 LDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVV 181 (489)
Q Consensus 102 ~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i 181 (489)
..|-+.+..++.++.+-.+..||-......... . +.. ...++|..++..+++.+... +.+
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq~~le~n-------------~---tg~---aldm~wDkegdvlavlAek~-~pi 99 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQVILELN-------------P---TGK---ALDMAWDKEGDVLAVLAEKT-GPI 99 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhcceecccC-------------C---chh---HhhhhhccccchhhhhhhcC-CCe
Confidence 356777777999999989999987653222211 0 111 44588888877666666666 899
Q ss_pred EEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeE
Q 037120 182 SIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNS 261 (489)
Q Consensus 182 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~ 261 (489)
.+||++..... .+... ..|+... +.|++..+ .++.+-..|.+.|++..+..... ....|...+++
T Consensus 100 ylwd~n~eytq---qLE~g-------g~~s~sl--l~wsKg~~-el~ig~~~gn~viynhgtsR~ii--v~Gkh~RRgtq 164 (615)
T KOG2247|consen 100 YLWDVNSEYTQ---QLESG-------GTSSKSL--LAWSKGTP-ELVIGNNAGNIVIYNHGTSRRII--VMGKHQRRGTQ 164 (615)
T ss_pred eechhhhhhHH---HHhcc-------CcchHHH--HhhccCCc-cccccccccceEEEeccchhhhh--hhcccccceeE
Confidence 99999543211 11100 1233333 67888888 88888899999999988765321 22238889999
Q ss_pred EEEeecCCEEEEEeCCC
Q 037120 262 IQLHAENQIIFAAGKHG 278 (489)
Q Consensus 262 ~~~~p~~~~l~~~~~dg 278 (489)
+++.+.+.. +.++.|.
T Consensus 165 ~av~lEd~v-il~dcd~ 180 (615)
T KOG2247|consen 165 IAVTLEDYV-ILCDCDN 180 (615)
T ss_pred EEeccccee-eecCcHH
Confidence 999987754 4444443
No 421
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.56 E-value=31 Score=36.47 Aligned_cols=76 Identities=11% Similarity=0.208 Sum_probs=51.6
Q ss_pred cCeeEEEEecCCCcEEEEEeCCCcEEEEECCC----------CCcC--ceee-------ccCCCCceeEEEEeec---CC
Q 037120 212 KGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV----------GVLP--SLEL-------STGSHGTLNSIQLHAE---NQ 269 (489)
Q Consensus 212 ~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----------~~~~--~~~~-------~~~h~~~v~~~~~~p~---~~ 269 (489)
-.|..|.++|+|. +++-.|..| |.|..+-. ++.. |... ...+...|..+.|+|. +.
T Consensus 85 f~v~~i~~n~~g~-~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTGS-LLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCCC-EEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 3788999999999 777777554 44443321 1111 1111 1134567889999997 57
Q ss_pred EEEEEeCCCeEEEEEcCCCc
Q 037120 270 IIFAAGKHGSIYLWDLRGGR 289 (489)
Q Consensus 270 ~l~~~~~dg~i~lwd~~~~~ 289 (489)
+|++-.+|+++|+||+...+
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 88888999999999997644
No 422
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=84.51 E-value=22 Score=36.55 Aligned_cols=105 Identities=16% Similarity=0.186 Sum_probs=54.1
Q ss_pred CEEEEEecCC-----CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCc-----EEE
Q 037120 169 DEVACASTRS-----NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGV-----VNI 238 (489)
Q Consensus 169 ~~l~s~~~d~-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~-----i~i 238 (489)
.+.+.|+.+. .++..||...........+...+ .+|. ++.. ++. +++.||.|+. |..
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R------~~~g-----~a~~-~~~-iYvvGG~~~~~~~~~VE~ 495 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR------SGFG-----VAVL-NGK-IYVVGGFDGTSALSSVER 495 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc------ccce-----EEEE-CCE-EEEECCccCCCccceEEE
Confidence 4666666441 35677887544333222222222 1111 2222 455 7777887763 778
Q ss_pred EECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCC-----eEEEEEcCCC
Q 037120 239 WDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHG-----SIYLWDLRGG 288 (489)
Q Consensus 239 wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg-----~i~lwd~~~~ 288 (489)
||..+.++..+..+......+-.+.+ ++...++||.|| +|..||..+.
T Consensus 496 ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 496 YDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred EcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 99988765433222222222222222 456666777665 4666666553
No 423
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.31 E-value=7.3 Score=38.24 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=26.4
Q ss_pred cCCCcceeecCC--cEEEEeecCCCcEEEEeccCC
Q 037120 384 LHLRKPSWLSTN--SIYAVGSSSDHGIHLLDFFPG 416 (489)
Q Consensus 384 ~~~~~~~~~~~~--~~~l~sgs~d~~i~vwd~~~~ 416 (489)
+.+++.+|.|+. +..++--+.|+.|||||+...
T Consensus 166 ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 166 LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred eeeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence 556788999986 555665679999999999866
No 424
>PRK10115 protease 2; Provisional
Probab=84.25 E-value=40 Score=35.65 Aligned_cols=114 Identities=6% Similarity=-0.075 Sum_probs=62.5
Q ss_pred eeEEEeeCCCCCEEEEEecC---CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC-
Q 037120 158 LDAVRWNLANQDEVACASTR---SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH- 233 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d---~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d- 233 (489)
+..+.|+|++..++++...+ ...|++-|+..+. .+...- .+ .-..++|.++++.++++...+
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~-----~l~~~i------~~---~~~~~~w~~D~~~~~y~~~~~~ 194 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN-----WYPELL------DN---VEPSFVWANDSWTFYYVRKHPV 194 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC-----CCCccc------cC---cceEEEEeeCCCEEEEEEecCC
Confidence 77789999998555554333 1357777774321 111000 11 114589999998444444322
Q ss_pred ----CcEEEEECCCCCcCceeeccCCCCcee-EEEEeecCCEEEEEeC---CCeEEEEEc
Q 037120 234 ----GVVNIWDRRVGVLPSLELSTGSHGTLN-SIQLHAENQIIFAAGK---HGSIYLWDL 285 (489)
Q Consensus 234 ----g~i~iwd~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~~~~~---dg~i~lwd~ 285 (489)
..|+.+++.++...-...+........ .+..+.++++++..+. ++.+.+|+.
T Consensus 195 ~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 195 TLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 367888888873222212222222233 3333447887665544 567999995
No 425
>PHA03098 kelch-like protein; Provisional
Probab=83.97 E-value=19 Score=36.72 Aligned_cols=64 Identities=11% Similarity=0.096 Sum_probs=34.4
Q ss_pred CCCcEEEEEeCC--------CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCC
Q 037120 222 VNTSRLIASDTH--------GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKH-----GSIYLWDLRGG 288 (489)
Q Consensus 222 ~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d-----g~i~lwd~~~~ 288 (489)
++. +++.|+.+ ..+.+||..+.++..+............+. -++..++.||.+ +.|.+||..+.
T Consensus 437 ~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 437 DGK-IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCE-EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 455 66666632 238899998876442221111111112222 266777777653 46788887764
No 426
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=83.72 E-value=28 Score=35.42 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=38.6
Q ss_pred CCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 233 HGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 233 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
-|.|.-+|+.+++.. .+... ..+...-.+.-.+.+++.+..||.++.+|.++|+.+-.++.
T Consensus 440 ~g~l~AiD~~tGk~~-W~~~~--~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 440 MGSLIAWDPITGKIV-WEHKE--DFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred ceeEEEEeCCCCcee-eEecC--CCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 467888899888632 21211 11111111223556778877799999999999998776654
No 427
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.18 E-value=10 Score=31.95 Aligned_cols=29 Identities=17% Similarity=0.332 Sum_probs=23.2
Q ss_pred ceeEEEeeCCC-----CCEEEEEecCCCEEEEEEe
Q 037120 157 QLDAVRWNLAN-----QDEVACASTRSNVVSIYDI 186 (489)
Q Consensus 157 ~V~~v~~~~~~-----~~~l~s~~~d~g~i~vwd~ 186 (489)
.|.+++|+|.| ..+|++...+ +.|.||.-
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~-~~l~l~~~ 120 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSN-GRLSLYGP 120 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCC-CeEEEEec
Confidence 58899999954 4477777777 99999987
No 428
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=81.80 E-value=28 Score=30.25 Aligned_cols=104 Identities=15% Similarity=0.124 Sum_probs=57.9
Q ss_pred CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC---C---cEEEE---
Q 037120 169 DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH---G---VVNIW--- 239 (489)
Q Consensus 169 ~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d---g---~i~iw--- 239 (489)
.++++++ ++.|.+|++....... +.... --+.|..+.++..|+ +++|-=.+ . .+|+|
T Consensus 30 ~Lfva~~--g~~Vev~~l~~~~~~~---~~~F~--------Tv~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NW 95 (215)
T PF14761_consen 30 ALFVAAS--GCKVEVYDLEQEECPL---LCTFS--------TVGRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNW 95 (215)
T ss_pred eEEEEcC--CCEEEEEEcccCCCce---eEEEc--------chhheeEEEeccccc-eEEEEEeecCCccceEEEEEEEh
Confidence 3555555 4899999995222221 11111 114889999999999 88876532 2 55664
Q ss_pred ECCC-CCcCceeeccCC---------------------CCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 240 DRRV-GVLPSLELSTGS---------------------HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 240 d~~~-~~~~~~~~~~~h---------------------~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
.... .+.+..-.+.+| +..+.|++-.|-.-.|+.|+ ++++.||-+..
T Consensus 96 r~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 96 RSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY 164 (215)
T ss_pred hhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence 3331 112211012222 33566787777544455554 55888988764
No 429
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.69 E-value=33 Score=33.37 Aligned_cols=117 Identities=11% Similarity=0.174 Sum_probs=69.0
Q ss_pred ceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcE
Q 037120 157 QLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVV 236 (489)
Q Consensus 157 ~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i 236 (489)
+|.++.|++|++ .++.--.+ ++|.+++.... ++ .+..... ...-+..|....|.... -++-.+ +.-+
T Consensus 68 ~I~SIkFSlDnk-ilAVQR~~-~~v~f~nf~~d--~~--~l~~~~~----ck~k~~~IlGF~W~~s~--e~A~i~-~~G~ 134 (657)
T KOG2377|consen 68 EIKSIKFSLDNK-ILAVQRTS-KTVDFCNFIPD--NS--QLEYTQE----CKTKNANILGFCWTSST--EIAFIT-DQGI 134 (657)
T ss_pred ceeEEEeccCcc-eEEEEecC-ceEEEEecCCC--ch--hhHHHHH----hccCcceeEEEEEecCe--eEEEEe-cCCe
Confidence 499999999986 66666666 99999987221 11 1110111 12234468888888664 355555 3345
Q ss_pred EEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC--CCeEEEEEcCC
Q 037120 237 NIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK--HGSIYLWDLRG 287 (489)
Q Consensus 237 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~--dg~i~lwd~~~ 287 (489)
-+|.....+ ..++..+.|+-.|+=..|.++-+.++.++. .+++.=+.+++
T Consensus 135 e~y~v~pek-rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 135 EFYQVLPEK-RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred EEEEEchhh-hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 666554422 234455577777888888888776555544 33443344443
No 430
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=81.16 E-value=57 Score=31.83 Aligned_cols=111 Identities=12% Similarity=0.125 Sum_probs=59.4
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
+.++.|.+++. +++++. .|.+..=+- .+.......+..... ..-...+.++.|.+++. ++.++.+|.+.
T Consensus 283 l~~v~~~~dg~-l~l~g~--~G~l~~S~d-~G~~~~~~~f~~~~~-----~~~~~~l~~v~~~~d~~--~~a~G~~G~v~ 351 (398)
T PLN00033 283 IQNMGWRADGG-LWLLTR--GGGLYVSKG-TGLTEEDFDFEEADI-----KSRGFGILDVGYRSKKE--AWAAGGSGILL 351 (398)
T ss_pred eeeeeEcCCCC-EEEEeC--CceEEEecC-CCCcccccceeeccc-----CCCCcceEEEEEcCCCc--EEEEECCCcEE
Confidence 78899998875 555554 366544322 111000001111110 10113588899998776 55566678776
Q ss_pred EEECCCCCcCceeecc---CCCCceeEEEEeecCCEEEEEeCCCeEEEE
Q 037120 238 IWDRRVGVLPSLELST---GSHGTLNSIQLHAENQIIFAAGKHGSIYLW 283 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~~~~~dg~i~lw 283 (489)
... ..++ ..+... .-...++.+.|.++++- ++.|.+|.|--|
T Consensus 352 ~s~-D~G~--tW~~~~~~~~~~~~ly~v~f~~~~~g-~~~G~~G~il~~ 396 (398)
T PLN00033 352 RST-DGGK--SWKRDKGADNIAANLYSVKFFDDKKG-FVLGNDGVLLRY 396 (398)
T ss_pred EeC-CCCc--ceeEccccCCCCcceeEEEEcCCCce-EEEeCCcEEEEe
Confidence 664 2233 222211 22356788998776554 566678877654
No 431
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.00 E-value=31 Score=38.17 Aligned_cols=117 Identities=14% Similarity=0.263 Sum_probs=66.5
Q ss_pred eeCCCCCEEEEEecCCCEEEEEEeccCCCCCce-eeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE--EE
Q 037120 163 WNLANQDEVACASTRSNVVSIYDIGYISDEPVE-VLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN--IW 239 (489)
Q Consensus 163 ~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~--iw 239 (489)
|.|.=+++|+.+. --.|.++-+......... .+... +.. .-....|+++....+|. .|++ |.||.|+ +|
T Consensus 135 Fv~~IqhlLvvaT--~~ei~ilgV~~~~~~~~~~~f~~~--~~i--~~dg~~V~~I~~t~nGR-IF~~-G~dg~lyEl~Y 206 (1311)
T KOG1900|consen 135 FVPEIQHLLVVAT--PVEIVILGVSFDEFTGELSIFNTS--FKI--SVDGVSVNCITYTENGR-IFFA-GRDGNLYELVY 206 (1311)
T ss_pred chhhhheeEEecc--cceEEEEEEEeccccCcccccccc--eee--ecCCceEEEEEeccCCc-EEEe-ecCCCEEEEEE
Confidence 3444455666666 357888877533221101 11111 111 11234688888777777 5554 4566433 22
Q ss_pred ECCCC------Cc------------C-ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 240 DRRVG------VL------------P-SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 240 d~~~~------~~------------~-~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
....+ .+ | ..+....+.++|..++.+..-..+++-+..|+|.+||+..
T Consensus 207 q~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 207 QAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 22211 00 1 1112225567999999998888899999999999999987
No 432
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=80.97 E-value=40 Score=30.97 Aligned_cols=118 Identities=13% Similarity=0.214 Sum_probs=65.1
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe------CCCcEEEEECCCCCcCceee-
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD------THGVVNIWDRRVGVLPSLEL- 251 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~- 251 (489)
..|++||.... .+.....+-.+.|+++.|..+.+ +++.|. ....+..||+.+.....+..
T Consensus 16 ~~lC~yd~~~~------------qW~~~g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~ 82 (281)
T PF12768_consen 16 PGLCLYDTDNS------------QWSSPGNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGG 82 (281)
T ss_pred CEEEEEECCCC------------EeecCCCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCCCeeeecCCc
Confidence 57999998322 12222234556899999996665 777665 34568889998765321211
Q ss_pred c-cCCCCceeEEEEee-cCCEEE-EEe-C--CCeEEEEEcCCCcccce-eecCCccCCCCeeEEEeCCC
Q 037120 252 S-TGSHGTLNSIQLHA-ENQIIF-AAG-K--HGSIYLWDLRGGRTSAP-FHNHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 252 ~-~~h~~~v~~~~~~p-~~~~l~-~~~-~--dg~i~lwd~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~ 313 (489)
. ..-.++|..+.+.. ++..+. +|. . +..|..||=.+...+.. ....... |..+.+-|-
T Consensus 83 ~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~----I~~l~~~~l 147 (281)
T PF12768_consen 83 SSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTT----IRGLQVLPL 147 (281)
T ss_pred ccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCE----EEEEEEEec
Confidence 0 11236788887743 333344 443 2 44566776555444333 2221223 666665543
No 433
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=80.72 E-value=59 Score=31.75 Aligned_cols=33 Identities=12% Similarity=0.381 Sum_probs=22.7
Q ss_pred CceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCc
Q 037120 257 GTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGR 289 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~ 289 (489)
.-|+.|.+|.|.++|+..+. +|.|+.||+....
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 34789999999999999988 9999999998754
No 434
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=80.06 E-value=6 Score=23.48 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=20.1
Q ss_pred CCceeEEEEeecCCEEEEEeC-C--CeEEEE
Q 037120 256 HGTLNSIQLHAENQIIFAAGK-H--GSIYLW 283 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~-d--g~i~lw 283 (489)
...-....|+|||+.|+-++. + |...||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445678899999998887766 5 666665
No 435
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=78.96 E-value=87 Score=32.95 Aligned_cols=30 Identities=13% Similarity=0.275 Sum_probs=22.2
Q ss_pred ccCeeEEEEecCCCcEEEEEeCCCcEEEEEC
Q 037120 211 QKGLSDLAFSAVNTSRLIASDTHGVVNIWDR 241 (489)
Q Consensus 211 ~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~ 241 (489)
.++|-..+|+.|.+ .++....+..|.++|.
T Consensus 112 ~nGIvaa~wS~DE~-~~cvvt~~r~il~~~k 141 (1243)
T COG5290 112 SNGIVAASWSADEK-TWCVVTSTREILLFDK 141 (1243)
T ss_pred cCceEEEeeccCCc-eEEEEEcCceEEEEec
Confidence 45788888998888 6666666777877764
No 436
>PHA02713 hypothetical protein; Provisional
Probab=78.51 E-value=23 Score=36.39 Aligned_cols=21 Identities=5% Similarity=0.071 Sum_probs=13.6
Q ss_pred CCcEEEEEecC------CeEEEEeCCC
Q 037120 107 KGIYLVSATRS------GCLTVHDFES 127 (489)
Q Consensus 107 ~g~~la~g~~d------g~i~vwd~~~ 127 (489)
++.+.+.|+.+ ..+..||..+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~ 329 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIEN 329 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCC
Confidence 56777777753 2466777665
No 437
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=77.71 E-value=65 Score=30.53 Aligned_cols=28 Identities=7% Similarity=0.089 Sum_probs=21.7
Q ss_pred cCCCceEEEEeeCCCCeEEeccCcceeE
Q 037120 446 PLSEGVTACVTHPLNNTIVAGTKNSSLL 473 (489)
Q Consensus 446 ~h~~~V~~va~~p~~~~i~sgs~dg~i~ 473 (489)
.....+.++++.|+|.+.++-+.+|.|.
T Consensus 303 ~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 303 GFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4556899999999999888888888774
No 438
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.26 E-value=64 Score=32.10 Aligned_cols=83 Identities=11% Similarity=0.047 Sum_probs=51.6
Q ss_pred cCeeEEEEecCCCcEEEEEeCCCcEEEEEC---------CCCCcC--cee------ecc-CCCCceeEEEEeecC---CE
Q 037120 212 KGLSDLAFSAVNTSRLIASDTHGVVNIWDR---------RVGVLP--SLE------LST-GSHGTLNSIQLHAEN---QI 270 (489)
Q Consensus 212 ~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~---------~~~~~~--~~~------~~~-~h~~~v~~~~~~p~~---~~ 270 (489)
-.|..+..++.|. .++-.+.+|.+.++=. +.++.. |.. .+. ...-.+..++|+|+. .+
T Consensus 104 feV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 104 FEVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 3677888899999 7777777886654321 111110 110 011 111234578899975 67
Q ss_pred EEEEeCCCeEEEEEcCCCcccceee
Q 037120 271 IFAAGKHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 271 l~~~~~dg~i~lwd~~~~~~~~~~~ 295 (489)
+..-+.|+.||+||+.....++...
T Consensus 183 L~iL~sdnviRiy~lS~~telylqp 207 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTELYLQP 207 (741)
T ss_pred EEEEecCcEEEEEecCCcchhhccC
Confidence 7788889999999998876654433
No 439
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=77.25 E-value=24 Score=36.77 Aligned_cols=129 Identities=12% Similarity=0.095 Sum_probs=71.9
Q ss_pred ceeEEEECC--CCcEEEEEecCCeEEEEeCCCcccccCCC----C--CCCCCcccccccccCCCCCCceeEEEee--CCC
Q 037120 98 GISALDFDC--KGIYLVSATRSGCLTVHDFESLYYQCNGT----L--PGVGLKEDQSKHLLHIPLPQQLDAVRWN--LAN 167 (489)
Q Consensus 98 ~V~~~~fs~--~g~~la~g~~dg~i~vwd~~~~~~~~~~~----~--~~~g~~~~~~~~~~h~~~~~~V~~v~~~--~~~ 167 (489)
.|+-|.... ....|+.+.+||.|.+|..++........ . .......+. +..+. +..+..++++ ...
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~--f~~~v--~~SaWGLdIh~~~~~ 177 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPF--FHLRV--GASAWGLDIHDYKKS 177 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCC--eEeec--CCceeEEEEEecCcc
Confidence 355554443 45789999999999999875422111000 0 000011121 22221 1125668887 443
Q ss_pred CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCC--Cc---EEEEEeCCCcEEEEEC
Q 037120 168 QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVN--TS---RLIASDTHGVVNIWDR 241 (489)
Q Consensus 168 ~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~---~l~s~s~dg~i~iwd~ 241 (489)
.++|.++.. ..|.||-....... .....-..|..-|-+|+|.++. .. .+++++-.|.+.+|++
T Consensus 178 -rlIAVSsNs-~~VTVFaf~l~~~r---------~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 178 -RLIAVSSNS-QEVTVFAFALVDER---------FYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred -eEEEEecCC-ceEEEEEEeccccc---------cccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 356555544 78888877432111 0000012356678899998766 22 6788899999999887
No 440
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.90 E-value=1e+02 Score=32.27 Aligned_cols=59 Identities=8% Similarity=0.127 Sum_probs=43.1
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
..+..+..+|+.++|+.-..+|.|.+-+....+++..+..... .+-..++|..+...+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~---~~p~qm~WcgndaVvl 275 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDH---DPPKQMAWCGNDAVVL 275 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCC---CchHhceeecCCceEE
Confidence 5677899999999999888999999999887777666663221 1234778877665443
No 441
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=76.64 E-value=38 Score=31.49 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=41.8
Q ss_pred ccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEE
Q 037120 211 QKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWD 284 (489)
Q Consensus 211 ~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd 284 (489)
...+..+.-.++|. +++.++......-||--......... .-...|.+|.|.|++.+.+++ ..|.|+.=|
T Consensus 144 ~gs~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~~w~~~~r--~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 144 SGSINDITRSSDGR-YVAVSSRGNFYSSWDPGQTTWQPHNR--NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp ---EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred cceeEeEEECCCCc-EEEEECcccEEEEecCCCccceEEcc--CccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 35788888899998 77777665566688865433222322 336789999999998876654 888888877
No 442
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=76.25 E-value=19 Score=30.35 Aligned_cols=32 Identities=13% Similarity=0.188 Sum_probs=25.6
Q ss_pred cCeeEEEEecCC-----CcEEEEEeCCCcEEEEECCC
Q 037120 212 KGLSDLAFSAVN-----TSRLIASDTHGVVNIWDRRV 243 (489)
Q Consensus 212 ~~v~~~~~~~~~-----~~~l~s~s~dg~i~iwd~~~ 243 (489)
..|.+++|+|.| ..+|+..+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999955 34788888999999997653
No 443
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=75.01 E-value=65 Score=29.15 Aligned_cols=98 Identities=12% Similarity=0.072 Sum_probs=54.2
Q ss_pred CeeEEEEecCCCcEEEEEe---CCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEE-cCCC
Q 037120 213 GLSDLAFSAVNTSRLIASD---THGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWD-LRGG 288 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd-~~~~ 288 (489)
.+.+.++++++. .++... ....++++...... ..... ...+..-.|++++...++...+...+++- ...+
T Consensus 25 ~~~s~AvS~dg~-~~A~v~~~~~~~~L~~~~~~~~~---~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGS-RVAAVSEGDGGRSLYVGPAGGPV---RPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCC-eEEEEEEcCCCCEEEEEcCCCcc---eeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 678899999998 665554 33445555443321 11122 23778889999988776666666666663 3333
Q ss_pred cc-cceeecCCccCCCCeeEEEeCCCCccee
Q 037120 289 RT-SAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 289 ~~-~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
.. ...+...... .+|++++++|||..++
T Consensus 99 ~~~~~~v~~~~~~--~~I~~l~vSpDG~RvA 127 (253)
T PF10647_consen 99 TGEPVEVDWPGLR--GRITALRVSPDGTRVA 127 (253)
T ss_pred cceeEEecccccC--CceEEEEECCCCcEEE
Confidence 32 1111111000 0267777777766554
No 444
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.96 E-value=1.1e+02 Score=32.01 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=24.4
Q ss_pred CeeEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 037120 213 GLSDLAFSAVNTSRLIASDTHGVVNIWDRRVG 244 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 244 (489)
.+-.+.|+.+. .|+....||++++|++...
T Consensus 85 ~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 85 ELIGMGWSDDE--ELICVQKDGTVHVYGLLGE 114 (829)
T ss_pred CeeeecccCCc--eEEEEeccceEEEeecchh
Confidence 77788998665 4778889999999998643
No 445
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.70 E-value=53 Score=36.32 Aligned_cols=30 Identities=30% Similarity=0.340 Sum_probs=26.0
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCc
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESL 128 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~ 128 (489)
...++|+|...++|.|+.+|.|+++-....
T Consensus 38 ~~~~afD~~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 38 PSALAFDPTQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CcceeeccccceEEEEEecccEEEecccce
Confidence 457789999999999999999999976653
No 446
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.63 E-value=70 Score=29.36 Aligned_cols=79 Identities=13% Similarity=0.196 Sum_probs=52.0
Q ss_pred CCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc-CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 037120 208 SDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST-GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLR 286 (489)
Q Consensus 208 ~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~ 286 (489)
.+-...|.++.|+|+.+ .|++..+...-.||=...|+ .++.+. .--.....+.+.-+|+++++--.++.+.++.+.
T Consensus 82 ~g~~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~Gd--lirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 82 LGETANVSSLTYNPDTR-TLFAVTNKPAAIVELTKEGD--LIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccccccccceeeCCCcc-eEEEecCCCceEEEEecCCc--eEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 33444599999999999 67767666666676555565 443332 111234567787788776665559999988777
Q ss_pred CCc
Q 037120 287 GGR 289 (489)
Q Consensus 287 ~~~ 289 (489)
...
T Consensus 159 ~~t 161 (316)
T COG3204 159 ADT 161 (316)
T ss_pred CCc
Confidence 653
No 447
>PHA02790 Kelch-like protein; Provisional
Probab=74.57 E-value=83 Score=31.66 Aligned_cols=61 Identities=8% Similarity=0.103 Sum_probs=32.9
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCC
Q 037120 222 VNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKH-----GSIYLWDLRGG 288 (489)
Q Consensus 222 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d-----g~i~lwd~~~~ 288 (489)
++. +.+.|+ .+.+||.++.++..+..+.........+ .-+++..+.||.+ ..|..||..+.
T Consensus 407 ~~~-IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 407 GRR-LFLVGR---NAEFYCESSNTWTLIDDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCE-EEEECC---ceEEecCCCCcEeEcCCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 454 555553 5778999887654222221111222222 2367777777753 35777777654
No 448
>PRK10115 protease 2; Provisional
Probab=74.12 E-value=1.3e+02 Score=32.05 Aligned_cols=115 Identities=10% Similarity=0.010 Sum_probs=62.8
Q ss_pred eeEEEECCCCcEEEEEecC-----CeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 99 ISALDFDCKGIYLVSATRS-----GCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~d-----g~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
+..+.++|||++||.+... -.|+|-|+.++...... + ... -..++|.+++..++.+
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-------i---------~~~---~~~~~w~~D~~~~~y~ 189 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-------L---------DNV---EPSFVWANDSWTFYYV 189 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-------c---------cCc---ceEEEEeeCCCEEEEE
Confidence 7888999999999876542 34777788764322110 0 000 1248999998877776
Q ss_pred EecCC----CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCee-EEEEecCCCcEEEEEe--CCCcEEEEECC
Q 037120 174 ASTRS----NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLS-DLAFSAVNTSRLIASD--THGVVNIWDRR 242 (489)
Q Consensus 174 ~~~d~----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~s--~dg~i~iwd~~ 242 (489)
...++ ..|..+++.+...+...++... ..... .+..+.++..+++.+. .++.+.+++..
T Consensus 190 ~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~----------~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 190 RKHPVTLLPYQVWRHTIGTPASQDELVYEEK----------DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EecCCCCCCCEEEEEECCCChhHCeEEEeeC----------CCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 65321 3677777744422322222211 11122 2233336663443333 44678899854
No 449
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=73.10 E-value=73 Score=28.88 Aligned_cols=119 Identities=7% Similarity=0.012 Sum_probs=62.6
Q ss_pred eeEEEeeCCCCCEEEEEecC-CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcE
Q 037120 158 LDAVRWNLANQDEVACASTR-SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVV 236 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d-~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i 236 (489)
...+.|..++. ++-+.+.- ...|+.+|+..+. ++.... + . ..---..++.. ++. ++.-.=.++..
T Consensus 47 TQGL~~~~~g~-LyESTG~yG~S~l~~~d~~tg~-----~~~~~~-l----~-~~~FgEGit~~-~d~-l~qLTWk~~~~ 112 (264)
T PF05096_consen 47 TQGLEFLDDGT-LYESTGLYGQSSLRKVDLETGK-----VLQSVP-L----P-PRYFGEGITIL-GDK-LYQLTWKEGTG 112 (264)
T ss_dssp EEEEEEEETTE-EEEEECSTTEEEEEEEETTTSS-----EEEEEE------T-TT--EEEEEEE-TTE-EEEEESSSSEE
T ss_pred CccEEecCCCE-EEEeCCCCCcEEEEEEECCCCc-----EEEEEE-C----C-ccccceeEEEE-CCE-EEEEEecCCeE
Confidence 45588866664 55555544 2378888885432 221111 0 0 01112234433 233 44444478999
Q ss_pred EEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee
Q 037120 237 NIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 237 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~ 295 (489)
.+||..+-+ .+..+. ..+.=..++ .+++.|+.+.....|+++|..+.+....+.
T Consensus 113 f~yd~~tl~--~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 113 FVYDPNTLK--KIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp EEEETTTTE--EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred EEEccccce--EEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEE
Confidence 999998754 333332 223444555 567777777667799999998876544443
No 450
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=71.88 E-value=17 Score=21.46 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=18.8
Q ss_pred cCeeEEEEecCCCcEEEEEeCC--CcEEEE
Q 037120 212 KGLSDLAFSAVNTSRLIASDTH--GVVNIW 239 (489)
Q Consensus 212 ~~v~~~~~~~~~~~~l~s~s~d--g~i~iw 239 (489)
..-....|+|||+.++.++..+ |.-.||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3567789999999555555566 666665
No 451
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=71.75 E-value=25 Score=34.25 Aligned_cols=41 Identities=10% Similarity=-0.070 Sum_probs=33.4
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCccccc
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQC 132 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~ 132 (489)
+......+.+|..+|.+++.|+...=|.|.|+|+.+...+.
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvr 343 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVR 343 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhh
Confidence 55555669999999999988888778999999999865544
No 452
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=70.98 E-value=1.6e+02 Score=31.83 Aligned_cols=99 Identities=16% Similarity=0.228 Sum_probs=62.4
Q ss_pred cCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc---CceeeccCCCCc----------eeEEEEeecCCEEEEEeCCC
Q 037120 212 KGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL---PSLELSTGSHGT----------LNSIQLHAENQIIFAAGKHG 278 (489)
Q Consensus 212 ~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~h~~~----------v~~~~~~p~~~~l~~~~~dg 278 (489)
.+..+++|+|.....||.....|...|||+....+ ..++....+.+. ...+.|.++-..|++.. ..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RS 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CC
Confidence 36778999998887999999999999999921111 122222122222 33788888877777664 45
Q ss_pred eEEEEEcCCCcccceeecCCccCCCCeeEEEeCCC
Q 037120 279 SIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 279 ~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 313 (489)
.+.++|+.+......+-..... ..|..+.-++.
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~--~~IlDv~~~~~ 257 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTW--SWILDVKRSPD 257 (765)
T ss_pred ceEEEECCCCCccchhccCCCh--hheeeEEecCC
Confidence 7889999886552212211111 22777777776
No 453
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=70.57 E-value=9.3 Score=21.47 Aligned_cols=23 Identities=17% Similarity=0.498 Sum_probs=19.2
Q ss_pred CEEEEEeCCCeEEEEEcCCCccc
Q 037120 269 QIIFAAGKHGSIYLWDLRGGRTS 291 (489)
Q Consensus 269 ~~l~~~~~dg~i~lwd~~~~~~~ 291 (489)
..+++++.+|.+..+|.++|+.+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEE
Confidence 36788888999999999988754
No 454
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=70.18 E-value=18 Score=37.13 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=24.2
Q ss_pred cCeeEEEEec----CCCcEEEEEeCCCcEEEEECCCCC
Q 037120 212 KGLSDLAFSA----VNTSRLIASDTHGVVNIWDRRVGV 245 (489)
Q Consensus 212 ~~v~~~~~~~----~~~~~l~s~s~dg~i~iwd~~~~~ 245 (489)
..+.+++++. +.. ++++.+.|+.+|+||+.++.
T Consensus 215 ~~~~~~~~~~~~~~~~~-~l~tl~~D~~LRiW~l~t~~ 251 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDT-FLFTLSRDHTLRIWSLETGQ 251 (547)
T ss_dssp --EEEEEE-----ETTT-EEEEEETTSEEEEEETTTTC
T ss_pred CccceEEEecceeCCCC-EEEEEeCCCeEEEEECCCCe
Confidence 3455666665 444 99999999999999999987
No 455
>PHA03098 kelch-like protein; Provisional
Probab=69.89 E-value=73 Score=32.55 Aligned_cols=25 Identities=8% Similarity=0.037 Sum_probs=16.2
Q ss_pred CCCcEEEEEeCC------CcEEEEECCCCCcC
Q 037120 222 VNTSRLIASDTH------GVVNIWDRRVGVLP 247 (489)
Q Consensus 222 ~~~~~l~s~s~d------g~i~iwd~~~~~~~ 247 (489)
++. +++.||.+ ..+..||..+.++.
T Consensus 389 ~~~-iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 389 NNL-IYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCE-EEEECCcCCCCcccceEEEEeCCCCeee
Confidence 455 66777632 45889998876543
No 456
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.31 E-value=1.2e+02 Score=29.76 Aligned_cols=129 Identities=9% Similarity=0.042 Sum_probs=75.1
Q ss_pred eEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc--c
Q 037120 215 SDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT--S 291 (489)
Q Consensus 215 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~--~ 291 (489)
+.+-|. |.+ ..+-+...|.+.-|-+.-.... .+..-...+++|.++.|++|++.+++--.|..|.+++....+. .
T Consensus 26 ngvFfD-DaN-kqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 26 NGVFFD-DAN-KQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred cceeec-cCc-ceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence 445443 333 3444455677777766543211 2222234567999999999999999999999999999744332 2
Q ss_pred ceeecCCccCCCCeeEEEeCCCCcceeecc----------------ccceeeccceeEEEeCCCCCeEEEEEe
Q 037120 292 APFHNHKEVCHLPLTSLKLASMLEKIGTLK----------------AQSKIVSQEIHSIDLDPSCSYQLAFHL 348 (489)
Q Consensus 292 ~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~----------------~~~~~~~~~i~~~~~~p~~~~~~~~~~ 348 (489)
...+...+. ..|-...|......- -.+ ...+.+...|.+..+.++...++.++.
T Consensus 104 ~~~~ck~k~--~~IlGF~W~~s~e~A-~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 104 YTQECKTKN--ANILGFCWTSSTEIA-FITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred HHHHhccCc--ceeEEEEEecCeeEE-EEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 222211111 227788887764321 111 112233556777778887776666554
No 457
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=68.72 E-value=1.2e+02 Score=30.27 Aligned_cols=111 Identities=14% Similarity=0.082 Sum_probs=57.2
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCC------CcEEEEEe
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVN------TSRLIASD 231 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------~~~l~s~s 231 (489)
-..|+|.|++. +|++--.. |.|++++....... .+........ ..-......|+++|+- ..+.++-+
T Consensus 32 Pw~maflPDG~-llVtER~~-G~I~~v~~~~~~~~---~~~~l~~v~~--~~ge~GLlglal~PdF~~~~~n~~lYvsyt 104 (454)
T TIGR03606 32 PWALLWGPDNQ-LWVTERAT-GKILRVNPETGEVK---VVFTLPEIVN--DAQHNGLLGLALHPDFMQEKGNPYVYISYT 104 (454)
T ss_pred ceEEEEcCCCe-EEEEEecC-CEEEEEeCCCCcee---eeecCCceec--cCCCCceeeEEECCCccccCCCcEEEEEEe
Confidence 45599999984 66665534 89999876332111 1111111100 1125688999999885 11233321
Q ss_pred C---------CCcEEEEECCCC--C----cCceeec---cCCCCceeEEEEeecCCEEEEEeCC
Q 037120 232 T---------HGVVNIWDRRVG--V----LPSLELS---TGSHGTLNSIQLHAENQIIFAAGKH 277 (489)
Q Consensus 232 ~---------dg~i~iwd~~~~--~----~~~~~~~---~~h~~~v~~~~~~p~~~~l~~~~~d 277 (489)
. ...|.-|.+... . ...+... ..|. -..|+|.|+|.+.++.|..
T Consensus 105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred ccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCCcEEEEECCC
Confidence 1 223444544321 1 1111111 1232 3468899999877777664
No 458
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=68.53 E-value=20 Score=21.14 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=21.8
Q ss_pred EEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 270 IIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 270 ~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
.+++++.||.|+-.|.++|+.+-.++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 467777899999999999998666553
No 459
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=68.18 E-value=91 Score=27.98 Aligned_cols=49 Identities=8% Similarity=0.160 Sum_probs=31.3
Q ss_pred EEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-C--CeEEEEEcCC
Q 037120 237 NIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-H--GSIYLWDLRG 287 (489)
Q Consensus 237 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-d--g~i~lwd~~~ 287 (489)
.+||+.+.+...+.. .......+-++-|||+.+++||. | ..+++++...
T Consensus 49 ~~yD~~tn~~rpl~v--~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~ 100 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTV--QTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCT 100 (243)
T ss_pred EEEecCCCcEEeccC--CCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCC
Confidence 489999876332322 22333344567799999999987 4 3477777554
No 460
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=66.95 E-value=44 Score=24.54 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=30.4
Q ss_pred eCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC--CCeEEEE
Q 037120 231 DTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK--HGSIYLW 283 (489)
Q Consensus 231 s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~--dg~i~lw 283 (489)
..+|.+.-||..+++..++ ...-..-+.+++++++.+++.+-. -...|.|
T Consensus 34 ~~~GRll~ydp~t~~~~vl---~~~L~fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVL---LDGLYFPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp ---EEEEEEETTTTEEEEE---EEEESSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred CCCcCEEEEECCCCeEEEe---hhCCCccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 3467899999998763322 111245688999999998888743 3344444
No 461
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=65.60 E-value=18 Score=19.71 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=17.8
Q ss_pred eEEEECCCCcEEEEEecCCeEEEE
Q 037120 100 SALDFDCKGIYLVSATRSGCLTVH 123 (489)
Q Consensus 100 ~~~~fs~~g~~la~g~~dg~i~vw 123 (489)
..++++++|+++++=+..+.|++|
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEEC
Confidence 467777888888777777777765
No 462
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=64.66 E-value=1.6e+02 Score=29.39 Aligned_cols=30 Identities=17% Similarity=0.055 Sum_probs=24.0
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCC
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFES 127 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~ 127 (489)
.-..|+|.|||++|++--..|.|++++-.+
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~ 60 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPET 60 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCC
Confidence 467899999998887766579999997654
No 463
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=64.33 E-value=2.1e+02 Score=30.80 Aligned_cols=70 Identities=7% Similarity=0.002 Sum_probs=47.4
Q ss_pred ccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee-----------ecc------CCCCceeEEEEeecCCEEEE
Q 037120 211 QKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE-----------LST------GSHGTLNSIQLHAENQIIFA 273 (489)
Q Consensus 211 ~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----------~~~------~h~~~v~~~~~~p~~~~l~~ 273 (489)
...|.++.-...+. .++.+-.||+|.++|-.+-+..... ... ..-..+..++|+|++-.++.
T Consensus 259 ~~~V~si~~~~~~~-~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~ 337 (753)
T PF11635_consen 259 NKRVVSITSPELDI-VVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQ 337 (753)
T ss_pred CCeEEEEEecccCc-EEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEE
Confidence 35677887776676 8888889999999998765311000 000 11112335789999999888
Q ss_pred EeCCCeEE
Q 037120 274 AGKHGSIY 281 (489)
Q Consensus 274 ~~~dg~i~ 281 (489)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888866
No 464
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=64.00 E-value=1.5e+02 Score=28.97 Aligned_cols=116 Identities=14% Similarity=0.095 Sum_probs=59.8
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..+.++.|.++|.+++++ .+|.+.. .......-... .+.. .........+.++.|.+++. ++++|.
T Consensus 281 ~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~------~f~~----~~~~~~~~~l~~v~~~~d~~-~~a~G~- 346 (398)
T PLN00033 281 RRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDF------DFEE----ADIKSRGFGILDVGYRSKKE-AWAAGG- 346 (398)
T ss_pred cceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccc------ceee----cccCCCCcceEEEEEcCCCc-EEEEEC-
Confidence 348899999999888766 4565443 32221100000 0000 00111223388899998764 666665
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIW 239 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iw 239 (489)
.|.+....-. + +.......- ..-....+.+.|.++++ .++ .+.+|.|.-|
T Consensus 347 -~G~v~~s~D~-G-----~tW~~~~~~----~~~~~~ly~v~f~~~~~-g~~-~G~~G~il~~ 396 (398)
T PLN00033 347 -SGILLRSTDG-G-----KSWKRDKGA----DNIAANLYSVKFFDDKK-GFV-LGNDGVLLRY 396 (398)
T ss_pred -CCcEEEeCCC-C-----cceeEcccc----CCCCcceeEEEEcCCCc-eEE-EeCCcEEEEe
Confidence 4877766431 1 111111100 11234677898877665 444 5557877655
No 465
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=63.40 E-value=28 Score=27.96 Aligned_cols=56 Identities=11% Similarity=0.214 Sum_probs=29.9
Q ss_pred CCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCC
Q 037120 256 HGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~ 313 (489)
...+.---|+++...|+.+|. |++|+.|.+...+. +..+..+... .+...++|-|.
T Consensus 10 s~g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~s~--~~~~G~~~lPK 67 (136)
T PF08954_consen 10 SSGVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYRSP--EPQKGFAFLPK 67 (136)
T ss_dssp -SS-EEEEE-TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE--S--S--SEEEE--G
T ss_pred CCceeEeeEcCCCCEEEEEeccCcEEEEEEEcCCCCceEEccccccC--CCeEeeEecCc
Confidence 345555668889899998888 99999999987643 4444433322 34677777763
No 466
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=62.31 E-value=39 Score=24.65 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=25.8
Q ss_pred CceeEEEEeecCCEEEEEeC-CCeEEEEEcCC
Q 037120 257 GTLNSIQLHAENQIIFAAGK-HGSIYLWDLRG 287 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~ 287 (489)
..-+.|.++|++++|++++. .+.|++|....
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 34578999999999999977 89999998653
No 467
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=62.24 E-value=20 Score=21.41 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=18.1
Q ss_pred CCcEEEEeecCCCcEEEEeccCC
Q 037120 394 TNSIYAVGSSSDHGIHLLDFFPG 416 (489)
Q Consensus 394 ~~~~~l~sgs~d~~i~vwd~~~~ 416 (489)
++..+.++...++.|.++|..+.
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~ 24 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATN 24 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCC
Confidence 44667777777889999999877
No 468
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=60.65 E-value=26 Score=19.13 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=20.2
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEe
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHD 124 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd 124 (489)
+.|.+++..+ .++|+++.-+.+|||.
T Consensus 2 E~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC--CEEEEEeCCCeEEecC
Confidence 3477777655 4899999999999984
No 469
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=60.48 E-value=1.3e+02 Score=27.24 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=65.9
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCccccc-ccccCCCCCCceeEEE--eeCCCCCEEEEEe
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQS-KHLLHIPLPQQLDAVR--WNLANQDEVACAS 175 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~-~~~~h~~~~~~V~~v~--~~~~~~~~l~s~~ 175 (489)
|..+..-++-+.|++-+ |+.+.++++........... ...+.. ..........++...+ =...+...++.+.
T Consensus 38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~ 112 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAP----LAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV 112 (275)
T ss_pred EEEEEEecccCEEEEEc-CCccEEEEchhhcccccccc----ccccccccccccccccCCeeEEeeccccccceEEEEEE
Confidence 88888888876666654 59999999987444331100 000000 0000111111244444 1123333555555
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGV 245 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 245 (489)
..+|.+|............ .+.+. -...+.+++|. ++ .++.|.. ....+.|+.++.
T Consensus 113 --kk~i~i~~~~~~~~~f~~~---~ke~~-----lp~~~~~i~~~--~~-~i~v~~~-~~f~~idl~~~~ 168 (275)
T PF00780_consen 113 --KKKILIYEWNDPRNSFSKL---LKEIS-----LPDPPSSIAFL--GN-KICVGTS-KGFYLIDLNTGS 168 (275)
T ss_pred --CCEEEEEEEECCcccccce---eEEEE-----cCCCcEEEEEe--CC-EEEEEeC-CceEEEecCCCC
Confidence 3799999995431110011 11111 22578899998 34 5666664 446788887654
No 470
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=60.25 E-value=1.5e+02 Score=27.61 Aligned_cols=127 Identities=10% Similarity=0.143 Sum_probs=69.3
Q ss_pred CCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCC--CceeeeeceeeeeecCCcccCeeEEEEecCCC-------
Q 037120 154 LPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDE--PVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT------- 224 (489)
Q Consensus 154 ~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~------- 224 (489)
..++ |+++|.+. +-++.... +...+||....... +....-... ......-....+.+.|+....
T Consensus 24 N~WG---ia~~p~~~-~WVadngT-~~~TlYdg~~~~~~g~~~~L~vtiP--~~~~~~~~~~PTGiVfN~~~~F~vt~~g 96 (336)
T TIGR03118 24 NAWG---LSYRPGGP-FWVANTGT-GTATLYVGNPDTQPLVQDPLVVVIP--APPPLAAEGTPTGQVFNGSDTFVVSGEG 96 (336)
T ss_pred ccce---eEecCCCC-EEEecCCc-ceEEeecCCcccccCCccceEEEec--CCCCCCCCCCccEEEEeCCCceEEcCCC
Confidence 4455 99999885 44444444 89999999521111 111110000 000011233567777764322
Q ss_pred ----cEEEEEeCCCcEEEEECCCCCc---C-ceeeccCCCCcee-EEEEee--cCCEEEEEeC-CCeEEEEEcCC
Q 037120 225 ----SRLIASDTHGVVNIWDRRVGVL---P-SLELSTGSHGTLN-SIQLHA--ENQIIFAAGK-HGSIYLWDLRG 287 (489)
Q Consensus 225 ----~~l~s~s~dg~i~iwd~~~~~~---~-~~~~~~~h~~~v~-~~~~~p--~~~~l~~~~~-dg~i~lwd~~~ 287 (489)
..|+.+++||+|.-|.-..... . .+..-....+.|+ .+++.. .+.+|+++-. .++|.+||-.-
T Consensus 97 ~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f 171 (336)
T TIGR03118 97 ITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF 171 (336)
T ss_pred cccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence 2478889999999998544332 1 1211112224444 455543 4678888766 89999998553
No 471
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=58.11 E-value=1.2e+02 Score=31.93 Aligned_cols=32 Identities=16% Similarity=0.081 Sum_probs=26.8
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCC
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFE 126 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~ 126 (489)
..+||.+.+||.|.+.++..+.+..|.+++-.
T Consensus 111 v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~ 142 (1243)
T COG5290 111 VSNGIVAASWSADEKTWCVVTSTREILLFDKY 142 (1243)
T ss_pred ccCceEEEeeccCCceEEEEEcCceEEEEecc
Confidence 45689999999999988888888899888643
No 472
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=57.41 E-value=1.7e+02 Score=27.58 Aligned_cols=167 Identities=13% Similarity=0.116 Sum_probs=81.5
Q ss_pred CceeEEEECCCCcEEEEEecCCe------EEEEeCCCcccccCCCCCCCCCcccccccccCCC-----CCCceeEEEeeC
Q 037120 97 PGISALDFDCKGIYLVSATRSGC------LTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIP-----LPQQLDAVRWNL 165 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~------i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~-----~~~~V~~v~~~~ 165 (489)
.+++.|.+.+++..+.+.+.+|. +..+++.......... .......+..-.. ...+.-++++.+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~ 94 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGV-----TILDMIPLRDPDGQPFPKNGLDPEGIAVPP 94 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccce-----EeccceeccCCCCCcCCcCCCChhHeEEec
Confidence 45899999976666777778887 6555554411000000 0000000000000 111344688866
Q ss_pred CCCCEEEEEecCC------CEEEEEEeccCCCCCceeeeeceeeee-----ecCCcccCeeEEEEecCCCcEEEEEeC--
Q 037120 166 ANQDEVACASTRS------NVVSIYDIGYISDEPVEVLKTRRSVTV-----VGSDVQKGLSDLAFSAVNTSRLIASDT-- 232 (489)
Q Consensus 166 ~~~~~l~s~~~d~------g~i~vwd~~~~~~~~~~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~l~s~s~-- 232 (489)
++. +++ +++-+ ..|..++.. + .....+.....+.. .....+....+++++|+|. .|+++.+
T Consensus 95 ~g~-~~i-s~E~~~~~~~~p~I~~~~~~-G--~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~-~l~~~~E~~ 168 (326)
T PF13449_consen 95 DGS-FWI-SSEGGRTGGIPPRIRRFDLD-G--RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR-TLFAAMESP 168 (326)
T ss_pred CCC-EEE-EeCCccCCCCCCEEEEECCC-C--cccceEccccccccccCccccccCCCCeEEEEECCCCC-EEEEEECcc
Confidence 653 443 33333 466666653 1 11111110010100 1134567899999999998 6666652
Q ss_pred ---CC--c-------EEE--EECCCCCcC--ceee-ccC-----CCCceeEEEEeecCCEEEEE
Q 037120 233 ---HG--V-------VNI--WDRRVGVLP--SLEL-STG-----SHGTLNSIQLHAENQIIFAA 274 (489)
Q Consensus 233 ---dg--~-------i~i--wd~~~~~~~--~~~~-~~~-----h~~~v~~~~~~p~~~~l~~~ 274 (489)
|+ . +++ ||..+...+ .... +.. ....|..+.+-+++++++.=
T Consensus 169 l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 169 LKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred ccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 22 1 444 455442211 1111 111 35678888888998876554
No 473
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=56.94 E-value=21 Score=21.29 Aligned_cols=21 Identities=14% Similarity=0.351 Sum_probs=16.4
Q ss_pred cCCEEEEEeCCCeEEEEEcCC
Q 037120 267 ENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 267 ~~~~l~~~~~dg~i~lwd~~~ 287 (489)
.+..++.++.||.|+.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 466889999999999999864
No 474
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=54.97 E-value=1.1e+02 Score=24.50 Aligned_cols=116 Identities=14% Similarity=0.112 Sum_probs=63.4
Q ss_pred EEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec----CCCcEEEEEeCCCcE
Q 037120 161 VRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA----VNTSRLIASDTHGVV 236 (489)
Q Consensus 161 v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~l~s~s~dg~i 236 (489)
-+|....+ .|++++.- |+|.|++...........-.... + ..-...|++|+--+ ++...|+.|+ ...+
T Consensus 4 GkfDG~~p-cL~~aT~~-gKV~IH~ph~~~~~~~~~~~~i~-~----LNin~~italaaG~l~~~~~~D~LliGt-~t~l 75 (136)
T PF14781_consen 4 GKFDGVHP-CLACATTG-GKVFIHNPHERGQRTGRQDSDIS-F----LNINQEITALAAGRLKPDDGRDCLLIGT-QTSL 75 (136)
T ss_pred EEeCCCce-eEEEEecC-CEEEEECCCccccccccccCcee-E----EECCCceEEEEEEecCCCCCcCEEEEec-cceE
Confidence 45655555 45555555 89999988543221110000001 1 11234677775444 2233666666 6789
Q ss_pred EEEECCCCCcCceeeccCCCCceeEEEEee----cCCEEEEEeCCCeEEEEEcCCC
Q 037120 237 NIWDRRVGVLPSLELSTGSHGTLNSIQLHA----ENQIIFAAGKHGSIYLWDLRGG 288 (489)
Q Consensus 237 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p----~~~~l~~~~~dg~i~lwd~~~~ 288 (489)
..||+....... .+.-.+.|+++.+-. ..+++++| .+-.|.=||....
T Consensus 76 laYDV~~N~d~F---yke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~ 127 (136)
T PF14781_consen 76 LAYDVENNSDLF---YKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGN 127 (136)
T ss_pred EEEEcccCchhh---hhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCc
Confidence 999999865332 223357888888753 23444444 4556666775543
No 475
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=54.19 E-value=1.2e+02 Score=29.59 Aligned_cols=168 Identities=14% Similarity=0.098 Sum_probs=88.1
Q ss_pred CCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCcee-EEEeeCCCCCEEEEE
Q 037120 96 KPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLD-AVRWNLANQDEVACA 174 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~-~v~~~~~~~~~l~s~ 174 (489)
...|..+-..|||+.|..-+. ..+.|+++.+......+ ..+....-..| .|+ ++..-..+. -+..+
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rk------l~~dspg~~~~-----~Vte~l~lL~Gg~-SLLv~ 286 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRK------LVDDSPGDSRH-----QVTEQLYLLSGGF-SLLVV 286 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhh------hhhcCCCchHH-----HHHHHHHHHhCce-eEEEE
Confidence 345778889999998876655 67899998874433221 01110000000 122 111112232 34455
Q ss_pred ecCCCEEEEE-EeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCC-CcEEEEEeCCCcEEEEECCCCCcCceeec
Q 037120 175 STRSNVVSIY-DIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVN-TSRLIASDTHGVVNIWDRRVGVLPSLELS 252 (489)
Q Consensus 175 ~~d~g~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 252 (489)
..| |-|.-| |++...+. .+...+.+ .-....+.-+ .|+. ..-|++-+..|++.++.....+ ..+ +
T Consensus 287 ~~d-G~vsQWFdvr~~~~p---~l~h~R~f----~l~pa~~~~l--~pe~~rkgF~~l~~~G~L~~f~st~~~-~lL--~ 353 (733)
T COG4590 287 HED-GLVSQWFDVRRDGQP---HLNHIRNF----KLAPAEVQFL--LPETNRKGFYSLYRNGTLQSFYSTSEK-LLL--F 353 (733)
T ss_pred cCC-CceeeeeeeecCCCC---cceeeecc----ccCcccceee--ccccccceEEEEcCCCceeeeecccCc-cee--h
Confidence 556 766655 66544321 11111111 1111222222 2222 2267777888888887654433 222 1
Q ss_pred cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc
Q 037120 253 TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT 290 (489)
Q Consensus 253 ~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~ 290 (489)
..--..+.-++++|++.++++- ..|.|+++.+.+...
T Consensus 354 ~~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 354 ERAYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred hhhhcCcceeeeCcccchheee-cCCceEEEEecCCCC
Confidence 1122356778999999987653 467899998887543
No 476
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=53.88 E-value=2e+02 Score=27.19 Aligned_cols=116 Identities=12% Similarity=0.104 Sum_probs=61.9
Q ss_pred ceeEEEeeCCCCCEEEEEecCCCE------EEEEEeccCCCCCceeeeeceeeeeecCC-----cccCeeEEEEecCCCc
Q 037120 157 QLDAVRWNLANQDEVACASTRSNV------VSIYDIGYISDEPVEVLKTRRSVTVVGSD-----VQKGLSDLAFSAVNTS 225 (489)
Q Consensus 157 ~V~~v~~~~~~~~~l~s~~~d~g~------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~ 225 (489)
+++.+.+.+++. .+++.+++ |. +..+++.........+.......+..-.+ -.....+|++.+++.
T Consensus 21 GlSgl~~~~~~~-~~~avSD~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~- 97 (326)
T PF13449_consen 21 GLSGLDYDPDDG-RFYAVSDR-GPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS- 97 (326)
T ss_pred cEeeEEEeCCCC-EEEEEECC-CCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC-
Confidence 378899997543 66666655 77 66666643111111110000000000011 111455788866666
Q ss_pred EEEEEeCC------CcEEEEECCCCCcC-ce---e---------eccCCCCceeEEEEeecCCEEEEEeC
Q 037120 226 RLIASDTH------GVVNIWDRRVGVLP-SL---E---------LSTGSHGTLNSIQLHAENQIIFAAGK 276 (489)
Q Consensus 226 ~l~s~s~d------g~i~iwd~~~~~~~-~~---~---------~~~~h~~~v~~~~~~p~~~~l~~~~~ 276 (489)
++++.=.+ ..|..+|.. +... .+ . .....+..+.+|+++|+|+.|+++..
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 66665566 678888866 3321 11 0 01123567889999999997777643
No 477
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=45.93 E-value=2.6e+02 Score=26.22 Aligned_cols=24 Identities=4% Similarity=-0.086 Sum_probs=16.0
Q ss_pred CCCcEEEEEeCCC----cEEEEECCCCCc
Q 037120 222 VNTSRLIASDTHG----VVNIWDRRVGVL 246 (489)
Q Consensus 222 ~~~~~l~s~s~dg----~i~iwd~~~~~~ 246 (489)
++. +++.|+.++ .+.+||.++.+.
T Consensus 171 ~~~-iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 171 QNE-LYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCE-EEEEcCCCCccccceEEEecCCCee
Confidence 455 777777654 356889887654
No 478
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.24 E-value=3.7e+02 Score=30.45 Aligned_cols=40 Identities=3% Similarity=-0.016 Sum_probs=33.1
Q ss_pred cCCCceEEEEeeCCCCeEEeccCcceeEEEeccccccccc
Q 037120 446 PLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCTSDS 485 (489)
Q Consensus 446 ~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~~~~ 485 (489)
.+.++|..++.....+.+.+=++.|+|.+|.-..+...-+
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~ 279 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGP 279 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccCCCccce
Confidence 6778999999999889999999999999997666544433
No 479
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=43.74 E-value=3.1e+02 Score=26.54 Aligned_cols=161 Identities=12% Similarity=0.082 Sum_probs=82.4
Q ss_pred CCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCC-EEEEEe-cCC--CEE
Q 037120 106 CKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQD-EVACAS-TRS--NVV 181 (489)
Q Consensus 106 ~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~-~l~s~~-~d~--g~i 181 (489)
|...+++...+++-+.|||++......... |.+. .... ...+.+. ++. -|+.++ .++ .+|
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~~----Gr~N-NVDv---------rygf~l~--g~~vDlavas~R~~g~n~l 129 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQSLPV----GRPN-NVDV---------RYGFPLN--GKTVDLAVASDRSDGRNSL 129 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEEE-S----S-EE-EEEE---------EEEEEET--TEEEEEEEEEE-CCCT-EE
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEeecC----CCcc-eeee---------ecceecC--CceEEEEEEecCcCCCCeE
Confidence 446678888889999999999854443210 1100 0001 2223332 222 233443 221 579
Q ss_pred EEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEe--c-CCCcEEEEEeCCCcEEEEECCCCCc-----Cceeecc
Q 037120 182 SIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFS--A-VNTSRLIASDTHGVVNIWDRRVGVL-----PSLELST 253 (489)
Q Consensus 182 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~-~~~~~l~s~s~dg~i~iwd~~~~~~-----~~~~~~~ 253 (489)
++|.+.... ..+.........+..-...+..+++. + ++..+++....+|.+.-|-+..... ..++.+.
T Consensus 130 ~~f~id~~~----g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~ 205 (381)
T PF02333_consen 130 RLFRIDPDT----GELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK 205 (381)
T ss_dssp EEEEEETTT----TEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred EEEEecCCC----CcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence 999984221 12222110000001112356778774 2 3554666677889888776642211 1344443
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
-...+..|..+.....|+.+-.+--|.-|+...
T Consensus 206 -~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep 238 (381)
T PF02333_consen 206 -VGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEP 238 (381)
T ss_dssp --SS-EEEEEEETTTTEEEEEETTTEEEEEESSC
T ss_pred -CCCcceEEEEecccCCEEEecCccEEEEEecCC
Confidence 245788888888888899988887777777663
No 480
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=39.38 E-value=90 Score=30.49 Aligned_cols=146 Identities=9% Similarity=0.095 Sum_probs=68.6
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCee-EEEEecCCCcEEEEEeCCCcE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLS-DLAFSAVNTSRLIASDTHGVV 236 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~s~dg~i 236 (489)
|..+-..|+++.+.+-.+ .++.|+++....-+..+.+.... .+....|+ .+..-..|. -++.++.||.|
T Consensus 223 v~qllL~Pdg~~LYv~~g---~~~~v~~L~~r~l~~rkl~~dsp------g~~~~~Vte~l~lL~Gg~-SLLv~~~dG~v 292 (733)
T COG4590 223 VSQLLLTPDGKTLYVRTG---SELVVALLDKRSLQIRKLVDDSP------GDSRHQVTEQLYLLSGGF-SLLVVHEDGLV 292 (733)
T ss_pred hHhhEECCCCCEEEEecC---CeEEEEeecccccchhhhhhcCC------CchHHHHHHHHHHHhCce-eEEEEcCCCce
Confidence 555667888874444333 68899998543222111111100 00001222 122223344 67778889988
Q ss_pred EEE-ECCCCCcCceee---ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCC
Q 037120 237 NIW-DRRVGVLPSLEL---STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLAS 312 (489)
Q Consensus 237 ~iw-d~~~~~~~~~~~---~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 312 (489)
.-| |.+.+..+.+.. +.-...++..+.-..+.+-+++-...|++.++.....+.+- ++...+. +.-++++|
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~----~~~~~~Sp 367 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQA----PQLVAMSP 367 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhhhhcC----cceeeeCc
Confidence 766 777655442222 11111223322222233334444557777766544433211 1111112 55667777
Q ss_pred CCccee
Q 037120 313 MLEKIG 318 (489)
Q Consensus 313 ~~~~i~ 318 (489)
.+.++.
T Consensus 368 ~~~~Ll 373 (733)
T COG4590 368 NQAYLL 373 (733)
T ss_pred ccchhe
Confidence 776654
No 481
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=38.09 E-value=3.8e+02 Score=27.38 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=40.2
Q ss_pred EEEEEeCCCcEEEEECCCCCcCceeecc-CCC--CceeEEEEeecCCEEEEEeC------CCeEEEEEcCCCcccceee
Q 037120 226 RLIASDTHGVVNIWDRRVGVLPSLELST-GSH--GTLNSIQLHAENQIIFAAGK------HGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 226 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~h~--~~v~~~~~~p~~~~l~~~~~------dg~i~lwd~~~~~~~~~~~ 295 (489)
.++.++.|+.|.-.|.++++.. .+... .+. ..+.+.-.--++ .++++.. +|.|..+|.++|+.+-.+.
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~-W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVV-WSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEE-eecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 5677788999999999998733 21111 111 112111111133 4555532 6899999999998854443
No 482
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=36.20 E-value=5.4e+02 Score=27.08 Aligned_cols=30 Identities=17% Similarity=0.435 Sum_probs=27.4
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCC
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFE 126 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~ 126 (489)
..|..+.|.++++.+++.-.+|.|.+||..
T Consensus 130 ~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~ 159 (670)
T PF10395_consen 130 DKVVGIKFSSDGKIIYVVLENGSIQIYDFS 159 (670)
T ss_pred cceEEEEEecCCCEEEEEEcCCcEEEEecc
Confidence 458899999999999999999999999993
No 483
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=35.49 E-value=4.8e+02 Score=26.29 Aligned_cols=83 Identities=19% Similarity=0.171 Sum_probs=48.1
Q ss_pred EeCCCcEEEEECCCCCcC-ceeecc--CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCee
Q 037120 230 SDTHGVVNIWDRRVGVLP-SLELST--GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLT 306 (489)
Q Consensus 230 ~s~dg~i~iwd~~~~~~~-~~~~~~--~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 306 (489)
|-.+..|.-.|.|..... .+.... ......+|..- ..+-++++++..|-|++||--.-+....+++...+ |.
T Consensus 533 GlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~a----Ik 607 (776)
T COG5167 533 GLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDA----IK 607 (776)
T ss_pred eecccceEEecccccCCceeeeeehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccc----ee
Confidence 444677777787764322 111111 11122223222 24458899999999999995544444555555555 88
Q ss_pred EEEeCCCCcce
Q 037120 307 SLKLASMLEKI 317 (489)
Q Consensus 307 ~l~~~~~~~~i 317 (489)
.+..+.+|..+
T Consensus 608 ~idvta~Gk~i 618 (776)
T COG5167 608 HIDVTANGKHI 618 (776)
T ss_pred eeEeecCCcEE
Confidence 88888888655
No 484
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=35.23 E-value=3.8e+02 Score=28.76 Aligned_cols=123 Identities=8% Similarity=0.010 Sum_probs=64.2
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
++.+.++.+.++.+++.. +-.|.-||++.++--.... ..........+. ...+|.+.++..+ .
T Consensus 576 ~~spe~~~v~~l~~ss~S--lgagl~dgt~a~y~rap~g-----------Swd~ep~~~~~~-g~lPvrsla~~ed---~ 638 (925)
T KOG3522|consen 576 PPSPEHESVKLLLFSSGS--LGAGLIDGTLAVYGRAPSG-----------SWDGEPNISIPT-GSLPVRSLAFQED---F 638 (925)
T ss_pred CCCCchhhhhhhhccccc--cccCccCCccccccCCCCC-----------CCCCCCcccccc-CCccccchhhhhc---e
Confidence 355556667787777654 5556667777766332210 111111111111 1223677777665 4
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV 243 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 243 (489)
+.+++ +|.|.++......... . ... ...|...|+.+.....+ .+++-...-.+++++.++
T Consensus 639 ~was~--gG~V~vi~~tt~~~~~--~---lea----hqee~~~Vthm~~~~~g--VwvafasG~~~rlfhtet 698 (925)
T KOG3522|consen 639 VWASE--GGCVHVIPSTTFIRSW--D---LEA----HQEEAHSVTHMLYLDNG--VWVAFASGDEERLFHTET 698 (925)
T ss_pred eeeec--CCceEEEechhccccc--h---hHH----HHhhcceEEEEEeeCCc--eEEEEcCCCEEEEecccc
Confidence 44444 4999999985432221 0 110 14466688998877544 344444344566665554
No 485
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=33.86 E-value=93 Score=28.65 Aligned_cols=62 Identities=23% Similarity=0.156 Sum_probs=37.6
Q ss_pred EEEEeec-CCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEecc------Cc
Q 037120 397 IYAVGSS-SDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGT------KN 469 (489)
Q Consensus 397 ~~l~sgs-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs------~d 469 (489)
.+-.+|+ .-..|++||.... +=...-. +..+.|+++.|.-+...+|+|. ..
T Consensus 6 ~F~~aGsL~C~~lC~yd~~~~----------qW~~~g~------------~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~ 63 (281)
T PF12768_consen 6 SFTSAGSLPCPGLCLYDTDNS----------QWSSPGN------------GISGTVTDLQWASNNQLLVGGNFTLNGTNS 63 (281)
T ss_pred ecCCCCCcCCCEEEEEECCCC----------EeecCCC------------CceEEEEEEEEecCCEEEEEEeeEECCCCc
Confidence 3333444 3458999998876 2222212 4668899999996667777764 34
Q ss_pred ceeEEEecccc
Q 037120 470 SSLLVVSQKQQ 480 (489)
Q Consensus 470 g~i~v~~~~~~ 480 (489)
..+..|.-++.
T Consensus 64 ~~la~yd~~~~ 74 (281)
T PF12768_consen 64 SNLATYDFKNQ 74 (281)
T ss_pred eeEEEEecCCC
Confidence 44555554444
No 486
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=33.77 E-value=4.4e+02 Score=25.36 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=32.5
Q ss_pred EeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC--CCeEEEE
Q 037120 230 SDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK--HGSIYLW 283 (489)
Q Consensus 230 ~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~--dg~i~lw 283 (489)
+..+|.+.-||..+.... .+...-.-.+.++.+|++.+++.+-. -..-+.|
T Consensus 195 g~~~GRl~~YD~~tK~~~---VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ryw 247 (376)
T KOG1520|consen 195 GDPTGRLFRYDPSTKVTK---VLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYW 247 (376)
T ss_pred CCCccceEEecCcccchh---hhhhcccccccccCCCCCCEEEEEeeccceeeeeE
Confidence 336688888888775432 22222344578999999999888843 3344555
No 487
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=33.64 E-value=6.4e+02 Score=27.24 Aligned_cols=67 Identities=19% Similarity=0.276 Sum_probs=41.8
Q ss_pred EEEEEeCCCcEEEEECCCCCcCceeeccCCCCcee-------------EEEEee--cCCEEEEEeC----------CCeE
Q 037120 226 RLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLN-------------SIQLHA--ENQIIFAAGK----------HGSI 280 (489)
Q Consensus 226 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~-------------~~~~~p--~~~~l~~~~~----------dg~i 280 (489)
.++.++.|+.+.-.|.++++.. . .+ +..+.|. .+.-.| .+..+++|+. +|.|
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~-W-~f-g~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLC-E-DF-GNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEE-E-Ee-cCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 6778888999999999998632 2 11 1111110 111112 2445666643 6899
Q ss_pred EEEEcCCCcccceee
Q 037120 281 YLWDLRGGRTSAPFH 295 (489)
Q Consensus 281 ~lwd~~~~~~~~~~~ 295 (489)
+-+|.++|+.+-.+.
T Consensus 339 ~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 339 RAFDVNTGALVWAWD 353 (764)
T ss_pred EEEECCCCcEeeEEe
Confidence 999999999865554
No 488
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=32.90 E-value=6.2e+02 Score=26.86 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=29.6
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcc
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLY 129 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~ 129 (489)
..+-++++.-+|.|+-++.+..||.|++|++....
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 33457888889999999999999999999987643
No 489
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=32.40 E-value=7.4e+02 Score=27.56 Aligned_cols=106 Identities=13% Similarity=0.051 Sum_probs=60.8
Q ss_pred CCcEEEEECCCCCcCceeeccCCCCce--eEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEe
Q 037120 233 HGVVNIWDRRVGVLPSLELSTGSHGTL--NSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKL 310 (489)
Q Consensus 233 dg~i~iwd~~~~~~~~~~~~~~h~~~v--~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~ 310 (489)
+|.++.|++-.... .++. .|...+ .-.++.|...++++| -...+++||+..-+.++......-+ ..|+.+++
T Consensus 911 ~g~~ytyk~~~~g~-~lel--lh~T~~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p--~~Is~iqt 984 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGD-KLEL--LHKTEIPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIP--NRISSIQT 984 (1205)
T ss_pred CCceEEEEEEecCc-eeee--eeccCCCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCc--eEEEEEee
Confidence 34566666543322 2222 223222 235667877776655 4568999999876654433321111 22777766
Q ss_pred CCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCC
Q 037120 311 ASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDG 351 (489)
Q Consensus 311 ~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~ 351 (489)
.-..-.++ .....|..+.+.+.++.++.+.-|..
T Consensus 985 ~~~RI~Vg-------D~qeSV~~~~y~~~~n~l~~fadD~~ 1018 (1205)
T KOG1898|consen 985 YGARIVVG-------DIQESVHFVRYRREDNQLIVFADDPV 1018 (1205)
T ss_pred cceEEEEe-------eccceEEEEEEecCCCeEEEEeCCCc
Confidence 54433333 34567888899999888887765543
No 490
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=32.36 E-value=87 Score=18.58 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=18.4
Q ss_pred ceeEEEECCCCcEEEEEecCC
Q 037120 98 GISALDFDCKGIYLVSATRSG 118 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg 118 (489)
....|+++++|+..++|..++
T Consensus 14 ~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eEEEEEECCCCCEEEEEeecC
Confidence 378999999999999998776
No 491
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=32.27 E-value=7.9e+02 Score=27.84 Aligned_cols=143 Identities=13% Similarity=0.096 Sum_probs=71.5
Q ss_pred CcEEEEEec---------CCeEEEEeCCCcccccCCCCCCCCCcccccccc--cCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 108 GIYLVSATR---------SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHL--LHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 108 g~~la~g~~---------dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~--~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..|||+|+. -|.++|||+-..-.... ......+++ ........|.+++=- + +.|+++.
T Consensus 1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepg-------kP~t~~KlKel~~eE~KGtVsavceV-~--G~l~~~~- 1114 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPG-------KPFTKNKLKELYIEEQKGTVSAVCEV-R--GHLLSSQ- 1114 (1366)
T ss_pred cceEEEEEeecccccccCcccEEEEEEEEecCCCC-------CCcccceeeeeehhhcccceEEEEEe-c--cEEEEcc-
Confidence 357888863 57899999865222221 111111111 111111225555533 2 3677777
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEe----------cCCCcEEEEEeCCCcEEEEECCCCCc
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFS----------AVNTSRLIASDTHGVVNIWDRRVGVL 246 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----------~~~~~~l~s~s~dg~i~iwd~~~~~~ 246 (489)
+-+|.||++.... .+..++|- --.+ +|+.|..-..|.+.-......
T Consensus 1115 -GqKI~v~~l~r~~----------------------~ligVaFiD~~~yv~s~~~vkn-lIl~gDV~ksisfl~fqeep~ 1170 (1366)
T KOG1896|consen 1115 -GQKIIVRKLDRDS----------------------ELIGVAFIDLPLYVHSMKVVKN-LILAGDVMKSISFLGFQEEPY 1170 (1366)
T ss_pred -CcEEEEEEeccCC----------------------cceeeEEeccceeEEehhhhhh-heehhhhhhceEEEEEccCce
Confidence 5799999993221 22233332 1223 566666555555544433211
Q ss_pred Cceeecc--CCCCceeEEEEeecCCE--EEEEeCCCeEEEEEcC
Q 037120 247 PSLELST--GSHGTLNSIQLHAENQI--IFAAGKHGSIYLWDLR 286 (489)
Q Consensus 247 ~~~~~~~--~h~~~v~~~~~~p~~~~--l~~~~~dg~i~lwd~~ 286 (489)
.+..+. ...-.+.++.|--+|.. ++++..|+.|++|-..
T Consensus 1171 -rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1171 -RLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred -EEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 111111 11234677888777664 4455559998887544
No 492
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=31.97 E-value=3.5e+02 Score=23.70 Aligned_cols=68 Identities=12% Similarity=0.056 Sum_probs=39.2
Q ss_pred EEEEEe--CCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceee
Q 037120 226 RLIASD--THGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 226 ~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~ 295 (489)
++.+.+ ....|++||+++++....+.+. ...+..=-...-+.++..-.. +|.-..+|.++.+++..+.
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~--~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~ 128 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLA--PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS 128 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecC--CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc
Confidence 677776 3457999999987632111111 111211111223444444444 8999999999988766655
No 493
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=31.88 E-value=4.4e+02 Score=24.78 Aligned_cols=53 Identities=9% Similarity=0.169 Sum_probs=38.3
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC
Q 037120 217 LAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK 276 (489)
Q Consensus 217 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~ 276 (489)
-.|+ +|+ +.++-+..|.+.-+|..+++...+-.. .+....++|. |+++++|-+
T Consensus 208 PRWh-dgr-LwvldsgtGev~~vD~~~G~~e~Va~v---pG~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 208 PRWY-QGK-LWLLNSGRGELGYVDPQAGKFQPVAFL---PGFTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred CcEe-CCe-EEEEECCCCEEEEEcCCCCcEEEEEEC---CCCCccccee--CCEEEEEec
Confidence 4566 566 777778899999999988875544333 4567888887 888888744
No 494
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=31.71 E-value=90 Score=22.75 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=24.5
Q ss_pred CeeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 037120 213 GLSDLAFSAVNTSRLIASDTHGVVNIWDRRV 243 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 243 (489)
.-+.|.++|+++.++++....+.|++|..+.
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 4577999999995666666889999998653
No 495
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=30.89 E-value=6.4e+02 Score=26.38 Aligned_cols=42 Identities=5% Similarity=-0.030 Sum_probs=29.5
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeC---CCeEEEEEcCCCcc
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGK---HGSIYLWDLRGGRT 290 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~---dg~i~lwd~~~~~~ 290 (489)
.+....|...+.--.|+-...+|+.... -..|+++|..++..
T Consensus 308 w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~ 352 (682)
T COG1770 308 WRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEE 352 (682)
T ss_pred CeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCce
Confidence 4455578777777777777788877755 34688888877654
No 496
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=30.77 E-value=4.5e+02 Score=24.50 Aligned_cols=115 Identities=11% Similarity=0.116 Sum_probs=57.4
Q ss_pred CCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe-cCCCEEEEE
Q 037120 106 CKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS-TRSNVVSIY 184 (489)
Q Consensus 106 ~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~-~d~g~i~vw 184 (489)
.++++|+.|+.+|...+. ..... .......+... |+++...+..+ +|++-+ .. ..++++
T Consensus 11 ~~~~~lL~GTe~Gly~~~-~~~~~--------------~~~~kl~~~~~---v~q~~v~~~~~-lLi~Lsgk~-~~L~~~ 70 (302)
T smart00036 11 CDGKWLLVGTEEGLYVLN-ISDQP--------------GTLEKLIGRRS---VTQIWVLEENN-VLLMISGKK-PQLYSH 70 (302)
T ss_pred cCCcEEEEEeCCceEEEE-cccCC--------------CCeEEecCcCc---eEEEEEEhhhC-EEEEEeCCc-ceEEEE
Confidence 344689999999965544 54311 00011223333 88899988765 555544 22 459999
Q ss_pred EeccCCCC-----CceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECC
Q 037120 185 DIGYISDE-----PVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRR 242 (489)
Q Consensus 185 d~~~~~~~-----~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 242 (489)
++..-... +.......... ...+|+.+.............++.+....+|.++...
T Consensus 71 ~L~~L~~~~~~~~~~~~~~~~~~~--~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~ 131 (302)
T smart00036 71 PLSALVEKKEALGSARLVIRKNVL--TKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWY 131 (302)
T ss_pred EHHHhhhhhhccCCccccccccce--EeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEcc
Confidence 99533210 00000001111 1134555544444443332244555556777776543
No 497
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=30.08 E-value=1.5e+02 Score=19.47 Aligned_cols=18 Identities=22% Similarity=0.218 Sum_probs=15.4
Q ss_pred eeEEEECCCCcEEEEEec
Q 037120 99 ISALDFDCKGIYLVSATR 116 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~ 116 (489)
+.+++.-|||++|++|..
T Consensus 3 ~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYV 20 (55)
T ss_pred eEEEEECCCCcEEEEEEe
Confidence 567889999999999964
No 498
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=29.50 E-value=2.3e+02 Score=20.80 Aligned_cols=24 Identities=8% Similarity=0.011 Sum_probs=15.8
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVS 182 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~ 182 (489)
-..|+.+++++.++++-... ..|.
T Consensus 59 pNGVals~d~~~vlv~Et~~-~Ri~ 82 (89)
T PF03088_consen 59 PNGVALSPDESFVLVAETGR-YRIL 82 (89)
T ss_dssp EEEEEE-TTSSEEEEEEGGG-TEEE
T ss_pred cCeEEEcCCCCEEEEEeccC-ceEE
Confidence 45599999998777776654 4444
No 499
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=28.81 E-value=1.8e+02 Score=30.54 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=23.1
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEec
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIG 187 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~ 187 (489)
++++.-+|.++ -++.+..| |+|.+|+..
T Consensus 17 ~~aiqshp~~~-s~v~~~~d-~si~lfn~~ 44 (1636)
T KOG3616|consen 17 TTAIQSHPGGQ-SFVLAHQD-GSIILFNFI 44 (1636)
T ss_pred eeeeeecCCCc-eEEEEecC-CcEEEEeec
Confidence 77788888886 67777877 999999983
No 500
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=27.82 E-value=5.1e+02 Score=24.25 Aligned_cols=63 Identities=14% Similarity=0.236 Sum_probs=38.9
Q ss_pred EeCCCcEEEEECCCCCcCceeecc--CCCCceeEEEEee------cCCEEEEEe-CCCeEEEEEcCCCcccceeec
Q 037120 230 SDTHGVVNIWDRRVGVLPSLELST--GSHGTLNSIQLHA------ENQIIFAAG-KHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 230 ~s~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~~~~~p------~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~~ 296 (489)
+..-|.|-++|+.- . .++++. +.-..-..|+..| .+. |++|- .||+|..||..+++.+-.+..
T Consensus 218 G~G~G~VdvFd~~G-~--l~~r~as~g~LNaPWG~a~APa~FG~~sg~-lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 218 GAGLGYVNVFTLNG-Q--LLRRVASSGRLNAPWGLAIAPESFGSLSGA-LLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred CCCcceEEEEcCCC-c--EEEEeccCCcccCCceeeeChhhhCCCCCC-eEEeecCCceeEEecCCCCceeeeecC
Confidence 33457899999864 3 444442 2223334566654 344 45554 499999999998886655554
Done!