BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037121
(683 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 44/72 (61%)
Query: 277 PEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGXXXXXXXXXXXXXXX 336
PE FRCPISLELM DPV VSTGQTY+RSSIQKWL AG+ CPK+
Sbjct: 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65
Query: 337 XXIHQFCADNGI 348
I +C NGI
Sbjct: 66 SLIALWCESNGI 77
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 94/170 (55%), Gaps = 20/170 (11%)
Query: 414 CIVESGAIPPLLNLLSSP-DQCVQENAVAALLKLSKHTSGK----KVIVESGGLKVILKV 468
++++GA+P L+ LLSSP +Q +QE AL LS SG + ++++G L ++++
Sbjct: 49 AVIDAGALPALVQLLSSPNEQILQE----ALWALSNIASGGNEQIQAVIDAGALPALVQL 104
Query: 469 LKSGLSLEARQIAAATLFYLTSV-KGYRKLIGET--PKAIPALVKLIEEGTDCGKKNAVV 525
L S QI L+ L+++ G + I A+PALV+L+ + + A+
Sbjct: 105 LSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 160
Query: 526 AIFGLLLSQGNH--QKVLDAGTVPLLADILASSNRTELITDSLAVLANLA 573
A+ + S GN Q V+DAG +P L +L+S N +++ ++L L+N+A
Sbjct: 161 ALSN-IASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIA 208
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 9/55 (16%)
Query: 414 CIVESGAIPPLLNLLSSP-DQCVQENAVAALLKLSKHTSG----KKVIVESGGLK 463
++++GA+P L+ LLSSP +Q +QE AL LS SG K+ + E+G L+
Sbjct: 175 AVIDAGALPALVQLLSSPNEQILQE----ALWALSNIASGGNEQKQAVKEAGALE 225
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 82/149 (55%), Gaps = 11/149 (7%)
Query: 415 IVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGK-KVIVESGGLKVILKVLKSGL 473
++++GA+P L+ LLSSP++ + + A+ AL ++ + + + ++++G L ++++L S
Sbjct: 50 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-- 107
Query: 474 SLEARQIAAATLFYLTSV-KGYRKLIGET--PKAIPALVKLIEEGTDCGKKNAVVAIFGL 530
QI L+ L+++ G + I A+PALV+L+ + + A+ A+
Sbjct: 108 --PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN- 164
Query: 531 LLSQGNHQK--VLDAGTVPLLADILASSN 557
+ S GN QK V +AG P L + +S N
Sbjct: 165 IASGGNEQKQAVKEAGAEPALEQLQSSPN 193
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 395 NKAAYEIRLLAKSNIFN-----RSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKH 449
N+ + L A SNI + + + E+GA P L L SSP++ +Q+ A AL K+ H
Sbjct: 151 NEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNEKIQKEAQEALEKIQSH 210
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 46/162 (28%)
Query: 414 CIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGL 473
++++GA+P L+ LLSSP++ + + A+ AL ++ SGG + I V+ +G
Sbjct: 49 AVIDAGALPALVQLLSSPNEQILQEALWALSNIA-----------SGGNEQIQAVIDAG- 96
Query: 474 SLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLS 533
A+PALV+L+ + + A+ A+ + S
Sbjct: 97 ------------------------------ALPALVQLLSSPNEQILQEALWALSN-IAS 125
Query: 534 QGNH--QKVLDAGTVPLLADILASSNRTELITDSLAVLANLA 573
GN Q V+DAG +P L +L+S N +++ ++L L+N+A
Sbjct: 126 GGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIA 166
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 9/55 (16%)
Query: 414 CIVESGAIPPLLNLLSSP-DQCVQENAVAALLKLSKHTSG----KKVIVESGGLK 463
++++GA+P L+ LLSSP +Q +QE AL LS SG K+ + E+G L+
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQE----ALWALSNIASGGNEQKQAVKEAGALE 183
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 46/161 (28%)
Query: 415 IVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLS 474
++++GA+P L+ LLSSP++ + + A+ AL ++ SGG + I V+ +G
Sbjct: 50 VIDAGALPALVQLLSSPNEQILQEALWALSNIA-----------SGGNEQIQAVIDAG-- 96
Query: 475 LEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ 534
A+PALV+L+ + + A+ A+ + S
Sbjct: 97 -----------------------------ALPALVQLLSSPNEQILQEALWALSN-IASG 126
Query: 535 GNH--QKVLDAGTVPLLADILASSNRTELITDSLAVLANLA 573
GN Q V+DAG +P L +L+S N +++ ++L L+N+A
Sbjct: 127 GNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIA 166
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 36/57 (63%)
Query: 415 IVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKS 471
++++GA+P L+ LLSSP++ + + A+ AL ++ + +K V+ G L+ L+S
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 7/170 (4%)
Query: 407 SNIFNRSCIVE--SGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGL-K 463
SN+ N E + AIP L LL+ DQ V A + +LSK + + I+ S +
Sbjct: 1 SNLINEQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS 60
Query: 464 VILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNA 523
I++ +++ +E + A TL L+ + I ++ IPALVK++ D A
Sbjct: 61 AIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYA 119
Query: 524 VVAIFGLLLSQ-GNHQKVLDAGTVPLLADILASSNRT--ELITDSLAVLA 570
+ + LLL Q G V AG + + +L +N + TD L +LA
Sbjct: 120 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 169
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 97/219 (44%), Gaps = 12/219 (5%)
Query: 396 KAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTS-GKK 454
++A+ + +A +V+ GAIP ++LL+SP + E AV AL ++ S +
Sbjct: 71 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRD 130
Query: 455 VIVESGGLKVILKVLK----SGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVK 510
++++ G + +L +L S L+ + TL L K I + +P LV+
Sbjct: 131 LVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVR 190
Query: 511 LIEEGTDCGKKNAVVAIFGLLLSQGNHQK---VLDAGTVPLLADILASSNRTELITDSLA 567
L+ + AI L+ G +++ V+ G VP L +L +S ++T +L
Sbjct: 191 LLHHDDPEVLADTCWAIS--YLTDGPNERIGMVVKTGVVPQLVKLLGAS-ELPIVTPALR 247
Query: 568 VLANLAEDI-QGTSTILKTSALPVIIGLLQTLTSRAGKE 605
+ N+ + T ++ AL V LL + KE
Sbjct: 248 AIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKE 286
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 12/219 (5%)
Query: 396 KAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KK 454
++A+ + +A +V+ GAIP ++LL+SP + E AV AL ++ S +
Sbjct: 96 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 155
Query: 455 VIVESGGLKVILKVLK----SGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVK 510
++++ G + +L +L S L+ + TL L K + + +P LV+
Sbjct: 156 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 215
Query: 511 LIEEGTDCGKKNAVVAIFGLLLSQGNHQK---VLDAGTVPLLADILASSNRTELITDSLA 567
L+ ++ AI L+ G +++ V+ G VP L +L ++ ++T +L
Sbjct: 216 LLHHNDPEVLADSCWAIS--YLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALR 272
Query: 568 VLANLAEDI-QGTSTILKTSALPVIIGLLQTLTSRAGKE 605
+ N+ + T ++ AL V LL + KE
Sbjct: 273 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 311
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 119/277 (42%), Gaps = 32/277 (11%)
Query: 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGL-KVILKVLKSGLSLEAR 478
AIP L LL+ DQ V A + +LSK + + I+ S + I++ +++ +E
Sbjct: 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 74
Query: 479 QIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ-GNH 537
+ A TL L+ + I ++ IPALVK++ D A+ + LLL Q G
Sbjct: 75 RCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133
Query: 538 QKVLDAGTVPLLADILASSNRT--ELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLL 595
V AG + + +L +N + TD L +LA + + IL + ++ ++
Sbjct: 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA--YGNQESKLIILASGGPQALVNIM 191
Query: 596 QTLTSRAGKEYCVSIL--LSLCSNAREEVTASLA--------KDPS---LMNSLYSLTTD 642
+T T +L LS+CS+ + + + DPS + N L++L
Sbjct: 192 RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN- 250
Query: 643 GTSQARKKARSLIKILHKFIE----------TCSSGV 669
S A K + +L ++ TC++G+
Sbjct: 251 -LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI 286
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 414 CIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVE-SGGLKVILKVLK 470
I +SG IP L+ +L SP V A+ L L H G K+ V +GGL+ ++ +L
Sbjct: 93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 150
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 12/219 (5%)
Query: 396 KAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KK 454
++A+ + +A +V+ GAIP ++LL+SP + E AV AL ++ S +
Sbjct: 120 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 179
Query: 455 VIVESGGLKVILKVLK----SGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVK 510
++++ G + +L +L S L+ + TL L K + + +P LV+
Sbjct: 180 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 239
Query: 511 LIEEGTDCGKKNAVVAIFGLLLSQGNHQK---VLDAGTVPLLADILASSNRTELITDSLA 567
L+ ++ AI L+ G +++ V+ G VP L +L ++ ++T +L
Sbjct: 240 LLHHNDPEVLADSCWAIS--YLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALR 296
Query: 568 VLANLAEDI-QGTSTILKTSALPVIIGLLQTLTSRAGKE 605
+ N+ + T ++ AL V LL + KE
Sbjct: 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 335
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 12/219 (5%)
Query: 396 KAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KK 454
++A+ + +A +V+ GAIP ++LL+SP + E AV AL ++ S +
Sbjct: 139 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRD 198
Query: 455 VIVESGGLKVILKVLK----SGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVK 510
++++ G + +L +L S L+ + TL L K + + +P LV+
Sbjct: 199 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 258
Query: 511 LIEEGTDCGKKNAVVAIFGLLLSQGNHQK---VLDAGTVPLLADILASSNRTELITDSLA 567
L+ ++ AI L+ G +++ V+ G VP L +L ++ ++T +L
Sbjct: 259 LLHHNDPEVLADSCWAIS--YLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALR 315
Query: 568 VLANLAEDI-QGTSTILKTSALPVIIGLLQTLTSRAGKE 605
+ N+ + T ++ AL V LL + KE
Sbjct: 316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 354
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 12/219 (5%)
Query: 396 KAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KK 454
++A+ + +A +V+ GAIP ++LL+SP + E AV AL ++ S +
Sbjct: 106 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 165
Query: 455 VIVESGGLKVILKVLK----SGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVK 510
++++ G + +L +L S L+ + TL L K + + +P LV+
Sbjct: 166 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 225
Query: 511 LIEEGTDCGKKNAVVAIFGLLLSQGNHQK---VLDAGTVPLLADILASSNRTELITDSLA 567
L+ ++ AI L+ G +++ V+ G VP L +L ++ ++T +L
Sbjct: 226 LLHHNDPEVLADSCWAIS--YLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALR 282
Query: 568 VLANLAEDI-QGTSTILKTSALPVIIGLLQTLTSRAGKE 605
+ N+ + T ++ AL V LL + KE
Sbjct: 283 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 321
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 12/219 (5%)
Query: 396 KAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KK 454
++A+ + +A +V+ GAIP ++LL+SP + E AV AL ++ S +
Sbjct: 120 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 179
Query: 455 VIVESGGLKVILKVLK----SGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVK 510
++++ G + +L +L S L+ + TL L K + + +P LV+
Sbjct: 180 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 239
Query: 511 LIEEGTDCGKKNAVVAIFGLLLSQGNHQK---VLDAGTVPLLADILASSNRTELITDSLA 567
L+ ++ AI L+ G +++ V+ G VP L +L ++ ++T +L
Sbjct: 240 LLHHNDPEVLADSCWAIS--YLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALR 296
Query: 568 VLANLAEDI-QGTSTILKTSALPVIIGLLQTLTSRAGKE 605
+ N+ + T ++ AL V LL + KE
Sbjct: 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 335
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 12/219 (5%)
Query: 396 KAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KK 454
++A+ + +A +V+ GAIP ++LL+SP + E AV AL ++ S +
Sbjct: 70 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 129
Query: 455 VIVESGGLKVILKVLK----SGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVK 510
++++ G + +L +L S L+ + TL L K + + +P LV+
Sbjct: 130 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 189
Query: 511 LIEEGTDCGKKNAVVAIFGLLLSQGNHQK---VLDAGTVPLLADILASSNRTELITDSLA 567
L+ ++ AI L+ G +++ V+ G VP L +L ++ ++T +L
Sbjct: 190 LLHHNDPEVLADSCWAIS--YLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALR 246
Query: 568 VLANLAEDI-QGTSTILKTSALPVIIGLLQTLTSRAGKE 605
+ N+ + T ++ AL V LL + KE
Sbjct: 247 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 285
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 12/219 (5%)
Query: 396 KAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KK 454
++A+ + +A +V+ GAIP ++LL+SP + E AV AL ++ S +
Sbjct: 120 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 179
Query: 455 VIVESGGLKVILKVLK----SGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVK 510
++++ G + +L +L S L+ + TL L K + + +P LV+
Sbjct: 180 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 239
Query: 511 LIEEGTDCGKKNAVVAIFGLLLSQGNHQK---VLDAGTVPLLADILASSNRTELITDSLA 567
L+ ++ AI L+ G +++ V+ G VP L +L ++ ++T +L
Sbjct: 240 LLHHNDPEVLADSCWAIS--YLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALR 296
Query: 568 VLANLAEDI-QGTSTILKTSALPVIIGLLQTLTSRAGKE 605
+ N+ + T ++ AL V LL + KE
Sbjct: 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 335
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 12/219 (5%)
Query: 396 KAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KK 454
++A+ + +A +V+ GAIP ++LL+SP + E AV AL ++ S +
Sbjct: 76 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 135
Query: 455 VIVESGGLKVILKVLK----SGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVK 510
++++ G + +L +L S L+ + TL L K + + +P LV+
Sbjct: 136 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 195
Query: 511 LIEEGTDCGKKNAVVAIFGLLLSQGNHQK---VLDAGTVPLLADILASSNRTELITDSLA 567
L+ ++ AI L+ G +++ V+ G VP L +L ++ ++T +L
Sbjct: 196 LLHHNDPEVLADSCWAIS--YLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALR 252
Query: 568 VLANLAEDI-QGTSTILKTSALPVIIGLLQTLTSRAGKE 605
+ N+ + T ++ AL V LL + KE
Sbjct: 253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 291
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 12/219 (5%)
Query: 396 KAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KK 454
++A+ + +A +V+ GAIP ++LL+SP + E AV AL ++ S +
Sbjct: 104 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 163
Query: 455 VIVESGGLKVILKVLK----SGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVK 510
++++ G + +L +L S L+ + TL L K + + +P LV+
Sbjct: 164 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 223
Query: 511 LIEEGTDCGKKNAVVAIFGLLLSQGNHQK---VLDAGTVPLLADILASSNRTELITDSLA 567
L+ ++ AI L+ G +++ V+ G VP L +L ++ ++T +L
Sbjct: 224 LLHHNDPEVLADSCWAIS--YLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALR 280
Query: 568 VLANLAEDI-QGTSTILKTSALPVIIGLLQTLTSRAGKE 605
+ N+ + T ++ AL V LL + KE
Sbjct: 281 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 319
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 12/219 (5%)
Query: 396 KAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KK 454
++A+ + +A +V+ GAIP ++LL+SP + E AV AL ++ S +
Sbjct: 65 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 124
Query: 455 VIVESGGLKVILKVLK----SGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVK 510
++++ G + +L +L S L+ + TL L K + + +P LV+
Sbjct: 125 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 184
Query: 511 LIEEGTDCGKKNAVVAIFGLLLSQGNHQK---VLDAGTVPLLADILASSNRTELITDSLA 567
L+ ++ AI L+ G +++ V+ G VP L +L ++ ++T +L
Sbjct: 185 LLHHNDPEVLADSCWAIS--YLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALR 241
Query: 568 VLANLAEDI-QGTSTILKTSALPVIIGLLQTLTSRAGKE 605
+ N+ + T ++ AL V LL + KE
Sbjct: 242 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 280
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGL-KVILKVLKSGLSLEAR 478
AIP L LL+ DQ V A + +LSK + + I+ S + I++ +++ +E
Sbjct: 19 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 78
Query: 479 QIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ-GNH 537
+ A TL L+ + I ++ IPALVK++ D A+ + LLL Q G
Sbjct: 79 RCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 137
Query: 538 QKVLDAGTVPLLADILASSNRT--ELITDSLAVLA 570
V AG + + +L +N + TD L +LA
Sbjct: 138 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 172
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 415 IVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVE-SGGLKVILKVLK 470
I +SG IP L+ +L SP V A+ L L H G K+ V +GGL+ ++ +L
Sbjct: 98 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 154
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGL-KVILKVLKSGLSLEAR 478
AIP L LL+ DQ V A + +LSK + + I+ S + I++ +++ +E
Sbjct: 20 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 79
Query: 479 QIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ-GNH 537
+ A TL L+ + I ++ IPALVK++ D A+ + LLL Q G
Sbjct: 80 RCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 138
Query: 538 QKVLDAGTVPLLADILASSNRT--ELITDSLAVLA 570
V AG + + +L +N + TD L +LA
Sbjct: 139 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 173
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 415 IVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVE-SGGLKVILKVLK 470
I +SG IP L+ +L SP V A+ L L H G K+ V +GGL+ ++ +L
Sbjct: 99 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 155
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 7/170 (4%)
Query: 407 SNIFNRSCIVE--SGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGL-K 463
SN+ N E + AIP L LL+ DQ V A + +LSK + + I+ S +
Sbjct: 1 SNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS 60
Query: 464 VILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNA 523
I++ +++ +E + A TL L+ + I ++ IPALVK++ D A
Sbjct: 61 AIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYA 119
Query: 524 VVAIFGLLLSQ-GNHQKVLDAGTVPLLADILASSNRT--ELITDSLAVLA 570
+ + LLL Q G V AG + + +L +N + TD L +LA
Sbjct: 120 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 169
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 12/219 (5%)
Query: 396 KAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KK 454
++A+ + +A +V+ GAIP ++LL+SP + E AV AL ++ S +
Sbjct: 65 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 124
Query: 455 VIVESGGLKVILKVLK----SGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVK 510
++++ G + +L +L S L+ + TL L K + + +P LV+
Sbjct: 125 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 184
Query: 511 LIEEGTDCGKKNAVVAIFGLLLSQGNHQK---VLDAGTVPLLADILASSNRTELITDSLA 567
L+ ++ AI L+ G +++ V+ G VP L +L ++ ++T +L
Sbjct: 185 LLHHNDPEVLADSCWAIS--YLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALR 241
Query: 568 VLANLAEDI-QGTSTILKTSALPVIIGLLQTLTSRAGKE 605
+ N+ + T ++ AL V LL + KE
Sbjct: 242 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 280
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGL-KVILKVLKSGLSLEAR 478
AIP L LL+ DQ V A + +LSK + + I+ S + I++ +++ +E
Sbjct: 20 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 79
Query: 479 QIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ-GNH 537
+ A TL L+ + I ++ IPALVK++ D A+ + LLL Q G
Sbjct: 80 RCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 138
Query: 538 QKVLDAGTVPLLADILASSNRT--ELITDSLAVLA 570
V AG + + +L +N + TD L +LA
Sbjct: 139 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 173
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 415 IVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVE-SGGLKVILKVLK 470
I +SG IP L+ +L SP V A+ L L H G K+ V +GGL+ ++ +L
Sbjct: 99 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 155
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 12/219 (5%)
Query: 396 KAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KK 454
++A+ + +A +V+ GAIP ++LL+SP + E AV AL ++ S +
Sbjct: 69 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 128
Query: 455 VIVESGGLKVILKVLK----SGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVK 510
++++ G + +L +L S L+ + TL L K + + +P LV+
Sbjct: 129 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 188
Query: 511 LIEEGTDCGKKNAVVAIFGLLLSQGNHQK---VLDAGTVPLLADILASSNRTELITDSLA 567
L+ ++ AI L+ G +++ V+ G VP L +L ++ ++T +L
Sbjct: 189 LLHHNDPEVLADSCWAIS--YLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALR 245
Query: 568 VLANLAEDI-QGTSTILKTSALPVIIGLLQTLTSRAGKE 605
+ N+ + T ++ AL V LL + KE
Sbjct: 246 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 284
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGL-KVILKVLKSGLSLEAR 478
AIP L LL+ DQ V A + +LSK + + I+ S + I++ +++ +E
Sbjct: 21 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 80
Query: 479 QIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ-GNH 537
+ A TL L+ + I ++ IPALVK++ D A+ + LLL Q G
Sbjct: 81 RCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 139
Query: 538 QKVLDAGTVPLLADILASSNRT--ELITDSLAVLA 570
V AG + + +L +N + TD L +LA
Sbjct: 140 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 174
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 415 IVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVE-SGGLKVILKVLK 470
I +SG IP L+ +L SP V A+ L L H G K+ V +GGL+ ++ +L
Sbjct: 100 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 156
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGL-KVILKVLKSGLSLEAR 478
AIP L LL+ DQ V A + +LSK + + I+ S + I++ +++ +E
Sbjct: 22 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 81
Query: 479 QIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ-GNH 537
+ A TL L+ + I ++ IPALVK++ D A+ + LLL Q G
Sbjct: 82 RCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 140
Query: 538 QKVLDAGTVPLLADILASSNRT--ELITDSLAVLA 570
V AG + + +L +N + TD L +LA
Sbjct: 141 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 175
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 415 IVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVE-SGGLKVILKVLK 470
I +SG IP L+ +L SP V A+ L L H G K+ V +GGL+ ++ +L
Sbjct: 101 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 157
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 12/219 (5%)
Query: 396 KAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KK 454
++A+ + +A +V+ GAIP ++LL+SP + E AV AL ++ S +
Sbjct: 70 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 129
Query: 455 VIVESGGLKVILKVLK----SGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVK 510
++++ G + +L +L S L+ + TL L K + + +P LV+
Sbjct: 130 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 189
Query: 511 LIEEGTDCGKKNAVVAIFGLLLSQGNHQK---VLDAGTVPLLADILASSNRTELITDSLA 567
L+ ++ AI L+ G +++ V+ G VP L +L ++ ++T +L
Sbjct: 190 LLHHNDPEVLADSCWAIS--YLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALR 246
Query: 568 VLANLAEDI-QGTSTILKTSALPVIIGLLQTLTSRAGKE 605
+ N+ + T ++ AL V LL + KE
Sbjct: 247 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 285
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGL-KVILKVLKSGLSLEAR 478
AIP L LL+ DQ V A + +LSK + + I+ S + I++ +++ +E
Sbjct: 5 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 64
Query: 479 QIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ-GNH 537
+ A TL L+ + I ++ IPALVK++ D A+ + LLL Q G
Sbjct: 65 RCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 123
Query: 538 QKVLDAGTVPLLADILASSNRT--ELITDSLAVLA 570
V AG + + +L +N + TD L +LA
Sbjct: 124 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 158
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 415 IVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVE-SGGLKVILKVLK 470
I +SG IP L+ +L SP V A+ L L H G K+ V +GGL+ ++ +L
Sbjct: 84 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 140
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 12/219 (5%)
Query: 396 KAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KK 454
++A+ + +A +V+ GAIP ++LL+SP + E AV AL ++ S +
Sbjct: 69 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 128
Query: 455 VIVESGGLKVILKVLK----SGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVK 510
++++ G + +L +L S L+ + TL L K + + +P LV+
Sbjct: 129 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 188
Query: 511 LIEEGTDCGKKNAVVAIFGLLLSQGNHQK---VLDAGTVPLLADILASSNRTELITDSLA 567
L+ ++ AI L+ G +++ V+ G VP L +L ++ ++T +L
Sbjct: 189 LLHHNDPEVLADSCWAIS--YLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALR 245
Query: 568 VLANLAEDI-QGTSTILKTSALPVIIGLLQTLTSRAGKE 605
+ N+ + T ++ AL V LL + KE
Sbjct: 246 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 284
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGL-KVILKVLKSGLSLEAR 478
AIP L LL+ DQ V A + +LSK + + I+ S + I++ +++ +E
Sbjct: 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 77
Query: 479 QIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ-GNH 537
+ A TL L+ + I ++ IPALVK++ D A+ + LLL Q G
Sbjct: 78 RCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136
Query: 538 QKVLDAGTVPLLADILASSNRT--ELITDSLAVLA 570
V AG + + +L +N + TD L +LA
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 415 IVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVE-SGGLKVILKVLK 470
I +SG IP L+ +L SP V A+ L L H G K+ V +GGL+ ++ +L
Sbjct: 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 153
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 12/219 (5%)
Query: 396 KAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KK 454
++A+ + +A +V+ GAIP ++LL+SP + E AV AL ++ S +
Sbjct: 70 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 129
Query: 455 VIVESGGLKVILKVLK----SGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVK 510
++++ G + +L +L S L+ + TL L K + + +P LV+
Sbjct: 130 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 189
Query: 511 LIEEGTDCGKKNAVVAIFGLLLSQGNHQK---VLDAGTVPLLADILASSNRTELITDSLA 567
L+ ++ AI L+ G +++ V+ G VP L +L ++ ++T +L
Sbjct: 190 LLHHNDPEVLADSCWAIS--YLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALR 246
Query: 568 VLANLAEDI-QGTSTILKTSALPVIIGLLQTLTSRAGKE 605
+ N+ + T ++ AL V LL + KE
Sbjct: 247 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE 285
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGL-KVILKVLKSGLSLEAR 478
AIP L LL+ DQ V A + +LSK + + I+ S + I++ +++ +E
Sbjct: 3 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 62
Query: 479 QIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ-GNH 537
+ A TL L+ + I ++ IPALVK++ D A+ + LLL Q G
Sbjct: 63 RCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 121
Query: 538 QKVLDAGTVPLLADILASSNRT--ELITDSLAVLA 570
V AG + + +L +N + TD L +LA
Sbjct: 122 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 156
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 415 IVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVE-SGGLKVILKVLK 470
I +SG IP L+ +L SP V A+ L L H G K+ V +GGL+ ++ +L
Sbjct: 82 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 138
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGL-KVILKVLKSGLSLEAR 478
AIP L LL+ DQ V A + +LSK + + I+ S + I++ +++ +E
Sbjct: 7 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 66
Query: 479 QIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ-GNH 537
+ A TL L+ + I ++ IPALVK++ D A+ + LLL Q G
Sbjct: 67 RCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 125
Query: 538 QKVLDAGTVPLLADILASSNRT--ELITDSLAVLA 570
V AG + + +L +N + TD L +LA
Sbjct: 126 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 160
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 415 IVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVE-SGGLKVILKVLK 470
I +SG IP L+ +L SP V A+ L L H G K+ V +GGL+ ++ +L
Sbjct: 86 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 142
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGL-KVILKVLKSGLSLEAR 478
AIP L LL+ DQ V A + +LSK + + I+ S + I++ +++ +E
Sbjct: 3 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 62
Query: 479 QIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ-GNH 537
+ A TL L+ + I ++ IPALVK++ D A+ + LLL Q G
Sbjct: 63 RCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 121
Query: 538 QKVLDAGTVPLLADILASSNRT--ELITDSLAVLA 570
V AG + + +L +N + TD L +LA
Sbjct: 122 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 156
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 415 IVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVE-SGGLKVILKVLK 470
I +SG IP L+ +L SP V A+ L L H G K+ V +GGL+ ++ +L
Sbjct: 82 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 138
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGL-KVILKVLKSGLSLEAR 478
AIP L LL+ DQ V A + +LSK + + I+ S + I++ +++ +E
Sbjct: 14 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 73
Query: 479 QIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ-GNH 537
+ A TL L+ + I ++ IPALVK++ D A+ + LLL Q G
Sbjct: 74 RCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 132
Query: 538 QKVLDAGTVPLLADILASSNRT--ELITDSLAVLA 570
V AG + + +L +N + TD L +LA
Sbjct: 133 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 167
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 414 CIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVE-SGGLKVILKVL 469
I +SG IP L+ +L SP V A+ L L H G K+ V +GGL+ ++ +L
Sbjct: 92 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 148
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGL-KVILKVLKSGLSLEAR 478
AIP L LL+ DQ V A + +LSK + + I+ S + I++ +++ +E
Sbjct: 14 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 73
Query: 479 QIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ-GNH 537
+ A TL L+ + I ++ IPALVK++ D A+ + LLL Q G
Sbjct: 74 RCTAGTLHNLSHHREGLLAIFKS-GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 132
Query: 538 QKVLDAGTVPLLADILASSNRT--ELITDSLAVLA 570
V AG + + +L +N + TD L +LA
Sbjct: 133 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 167
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 414 CIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVE-SGGLKVILKVL 469
I +SG IP L+ +L SP V A+ L L H G K+ V +GGL+ ++ +L
Sbjct: 92 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 148
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 119/277 (42%), Gaps = 32/277 (11%)
Query: 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGL-KVILKVLKSGLSLEAR 478
AIP L LL+ DQ V A + +LSK + + I+ S + I++ +++ +E
Sbjct: 151 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 210
Query: 479 QIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ-GNH 537
+ + TL L+ + I ++ IPALV ++ D +A+ + LLL Q G
Sbjct: 211 RCTSGTLHNLSHHREGLLAIFKS-GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269
Query: 538 QKVLDAGTVPLLADILASSNRT--ELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLL 595
V AG + + +L +N + TD L +LA + + IL + ++ ++
Sbjct: 270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA--YGNQESKLIILASGGPQALVNIM 327
Query: 596 QTLTSRAGKEYCVSIL--LSLCSNAREEVTASLA--------KDPS---LMNSLYSLTTD 642
+T T +L LS+CS+ + + + DPS + N L++L
Sbjct: 328 RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN- 386
Query: 643 GTSQARKKARSLIKILHKFIE----------TCSSGV 669
S A K + +L ++ TC++G+
Sbjct: 387 -LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI 422
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 414 CIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVE-SGGLKVILKVLK 470
I +SG IP L+N+L SP V +A+ L L H G K+ V +GGL+ ++ +L
Sbjct: 229 AIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 286
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 145/335 (43%), Gaps = 36/335 (10%)
Query: 346 NGISLAKSGRKSRDITRTIIPGSP-----AAAEAMKLMSR--------------FLARRL 386
N + +A G + D+ I SP A + KL+S+ +AR +
Sbjct: 11 NNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFV 70
Query: 387 FFGTNEE----KNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAA 442
F +E + ++A+ + +A N ++++GA+P + LLSS + VQE AV A
Sbjct: 71 EFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWA 130
Query: 443 LLKLS-KHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGET 501
L ++ T + +++ L +L++ L + A L L K +
Sbjct: 131 LGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV 190
Query: 502 PKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNH---QKVLDAGTVPLLADILASSNR 558
+ L L+ +A A+ LS G + Q V+DAG L ++L N
Sbjct: 191 SPCLNVLSWLLFVSDTDVLADACWALS--YLSDGPNDKIQAVIDAGVCRRLVELLM-HND 247
Query: 559 TELITDSLAVLANL--AEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCS 616
++++ +L + N+ +DIQ T IL SAL ++ LL + KE C +I ++ +
Sbjct: 248 YKVVSPALRAVGNIVTGDDIQ-TQVILNCSALQSLLHLLSSPKESIKKEACWTI-SNITA 305
Query: 617 NAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKA 651
R ++ + D ++ +L S+ + RK+A
Sbjct: 306 GNRAQIQTVI--DANIFPALISILQTAEFRTRKEA 338
>pdb|2KR4|A Chain A, U-Box Domain Of The E3 Ubiquitin Ligase E4b
Length = 85
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 277 PEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWL 310
P++FR P+ LMTDPV + +G DRS I + L
Sbjct: 12 PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHL 45
>pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain
pdb|3L1X|A Chain A, Crystal Structure Of U-Box Domain Of Human E4b Ubiquitin
Ligase
pdb|3L1Z|B Chain B, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 100
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 277 PEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWL 310
P++FR P+ LMTDPV + +G DRS I + L
Sbjct: 27 PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL 60
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 78
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 279 DFRC-PISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGXXXXXXXXXXXXXXXX 337
D+ C IS ELM +P +G TYDR I++ L+ P T
Sbjct: 4 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKE 63
Query: 338 XIHQFCADNG 347
I F ++NG
Sbjct: 64 VIDAFISENG 73
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 119/262 (45%), Gaps = 13/262 (4%)
Query: 396 KAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLS-KHTSGKK 454
++A+ + +A N ++++GA+P + LLSS + VQE AV AL ++ T +
Sbjct: 81 ESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 140
Query: 455 VIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEE 514
+++ L +L++ L + A L L K + + L L+
Sbjct: 141 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV 200
Query: 515 GTDCGKKNAVVAIFGLLLSQGNH---QKVLDAGTVPLLADILASSNRTELITDSLAVLAN 571
+A A+ LS G + Q V+DAG L ++L N ++++ +L + N
Sbjct: 201 SDTDVLADACWALS--YLSDGPNDKIQAVIDAGVCRRLVELLM-HNDYKVVSPALRAVGN 257
Query: 572 L--AEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKD 629
+ +DIQ T IL SAL ++ LL + KE C +I ++ + R ++ + D
Sbjct: 258 IVTGDDIQ-TQVILNCSALQSLLHLLSSPKESIKKEACWTI-SNITAGNRAQIQTVI--D 313
Query: 630 PSLMNSLYSLTTDGTSQARKKA 651
++ +L S+ + RK+A
Sbjct: 314 ANIFPALISILQTAEFRTRKEA 335
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 279 DFRC-PISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGXXXXXXXXXXXXXXXX 337
D+ C IS ELM +P +G TYDR I++ L+ P T
Sbjct: 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKE 266
Query: 338 XIHQFCADNG 347
I F ++NG
Sbjct: 267 VIDAFISENG 276
>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1
Length = 457
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
Query: 387 FFGTNEEKNKA--AYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALL 444
+ + +EK +A AY I+ + + + + G I L++LL SP+Q VQ+ A AL
Sbjct: 10 YLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALR 69
Query: 445 KLS-KHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYR-KLIGETP 502
L + T+ K G++ + +L+ + E ++ L+ L+S + +LI +
Sbjct: 70 NLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIAD-- 127
Query: 503 KAIPALVKLI 512
A+P L +
Sbjct: 128 -ALPVLADRV 136
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 278 EDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLK------AGNMLCPKTG 321
E+ CPI LEL+T+P+++ G + R+ I K G CP G
Sbjct: 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCG 60
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 279 DFRC-PISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGXXXXXXXXXXXXXXXX 337
D+ C IS ELM +P +G TYDR I++ L+ P T
Sbjct: 105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKE 164
Query: 338 XIHQFCADNG 347
I F +NG
Sbjct: 165 VIDAFIQENG 174
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
Length = 80
Score = 32.7 bits (73), Expect = 0.71, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 279 DFRC-PISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKT 320
D+ C IS ELM +P +G TYDR I++ L+ P T
Sbjct: 12 DYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVT 54
>pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase
pdb|3DYD|B Chain B, Human Tyrosine Aminotransferase
Length = 427
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 506 PALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLA-DILASSNRTELITD 564
P + + +++ D GK N G L S+ PL A D++ +S ++ I
Sbjct: 74 PEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDL 133
Query: 565 SLAVLANLAEDI 576
LAVLAN ++I
Sbjct: 134 CLAVLANPGQNI 145
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 278 EDFRCPISLELMTDPVTVSTGQTYDRSSI-----QKWLKAGNMLCP 318
E+ CPI LEL+T P+++ G ++ ++ + + L G CP
Sbjct: 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCP 63
>pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase
Length = 402
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 506 PALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLA-DILASSNRTELITD 564
P + + +++ D GK N G L S+ PL A D++ +S ++ I
Sbjct: 51 PEVTQAMKDALDSGKYNGYAPSIGYLSSREEVASYYHCPEAPLEAKDVILTSGCSQAIEL 110
Query: 565 SLAVLANLAEDI 576
LAVLAN ++I
Sbjct: 111 CLAVLANPGQNI 122
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 415 IVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVE-SGGLKVILKVLK 470
I +SG IP L+ L SP V A+ L L H G K V +GGL+ + +L
Sbjct: 39 IFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLHQEGAKXAVRLAGGLQKXVALLN 95
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 415 IVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVE-SGGLKVILKVLK 470
I +SG IP L+ +LSSP + V A+ L L + G K+ V + GL+ ++ +L
Sbjct: 99 IFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLN 155
>pdb|3PAJ|A Chain A, 2.00 Angstrom Resolution Crystal Structure Of A
Quinolinate Phosphoribosyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
pdb|3PAJ|B Chain B, 2.00 Angstrom Resolution Crystal Structure Of A
Quinolinate Phosphoribosyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
Length = 320
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 481 AAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKK-NAVVAIFGLLLSQGNH 537
A AT Y+ +KG + + +T K IP L ++ CG N + +F L + NH
Sbjct: 154 ATATARYVQELKGTQCRLLDTRKTIPGLRSALKYAVACGGGYNHRIGVFDAYLIKENH 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,406,963
Number of Sequences: 62578
Number of extensions: 643240
Number of successful extensions: 1814
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1588
Number of HSP's gapped (non-prelim): 169
length of query: 683
length of database: 14,973,337
effective HSP length: 105
effective length of query: 578
effective length of database: 8,402,647
effective search space: 4856729966
effective search space used: 4856729966
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)