Query 037121
Match_columns 683
No_of_seqs 443 out of 3030
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 08:52:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037121.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037121hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 6.2E-28 1.3E-32 292.4 32.7 283 375-661 11-313 (2102)
2 KOG0166 Karyopherin (importin) 100.0 2.9E-27 6.2E-32 253.3 23.6 281 377-660 109-393 (514)
3 PLN03200 cellulose synthase-in 99.9 6.3E-26 1.4E-30 275.1 32.0 280 376-661 445-765 (2102)
4 COG5064 SRP1 Karyopherin (impo 99.9 4.1E-26 8.9E-31 226.7 14.2 279 378-660 115-398 (526)
5 KOG4224 Armadillo repeat prote 99.9 1.4E-24 3.1E-29 217.5 19.9 277 379-661 128-406 (550)
6 KOG4224 Armadillo repeat prote 99.9 2.4E-24 5.1E-29 215.9 21.2 277 378-661 168-447 (550)
7 KOG0166 Karyopherin (importin) 99.9 8.4E-22 1.8E-26 211.4 25.0 285 378-665 153-441 (514)
8 COG5064 SRP1 Karyopherin (impo 99.8 2.1E-19 4.6E-24 179.1 19.3 276 378-659 158-442 (526)
9 PF05804 KAP: Kinesin-associat 99.8 3.4E-17 7.3E-22 185.5 28.4 278 376-661 289-608 (708)
10 PF05804 KAP: Kinesin-associat 99.8 5.6E-17 1.2E-21 183.7 27.9 262 391-659 263-563 (708)
11 PF04564 U-box: U-box domain; 99.8 3.1E-19 6.7E-24 145.3 4.9 72 276-347 1-72 (73)
12 KOG1048 Neural adherens juncti 99.7 8.4E-16 1.8E-20 170.2 18.9 286 376-663 232-598 (717)
13 KOG4199 Uncharacterized conser 99.6 3.1E-13 6.7E-18 135.5 24.9 268 387-661 117-404 (461)
14 KOG4199 Uncharacterized conser 99.6 3.7E-13 8.1E-18 134.9 24.8 271 387-661 157-445 (461)
15 smart00504 Ubox Modified RING 99.6 2.8E-15 6E-20 119.0 6.0 63 279-342 1-63 (63)
16 KOG2122 Beta-catenin-binding p 99.5 8.7E-14 1.9E-18 159.5 17.4 263 395-662 316-603 (2195)
17 PF04826 Arm_2: Armadillo-like 99.5 9.1E-13 2E-17 133.4 21.9 191 378-574 13-205 (254)
18 PF04826 Arm_2: Armadillo-like 99.5 8.4E-13 1.8E-17 133.6 21.1 196 415-617 8-206 (254)
19 KOG1048 Neural adherens juncti 99.5 1.3E-12 2.8E-17 145.1 22.2 284 378-666 276-690 (717)
20 PF10508 Proteasom_PSMB: Prote 99.4 1.2E-10 2.6E-15 130.8 28.1 275 378-658 78-364 (503)
21 KOG2122 Beta-catenin-binding p 99.4 2.3E-12 4.9E-17 148.2 13.7 227 392-620 366-605 (2195)
22 KOG4500 Rho/Rac GTPase guanine 99.4 8.5E-11 1.8E-15 121.5 21.8 282 378-661 88-476 (604)
23 KOG1222 Kinesin associated pro 99.3 7.5E-11 1.6E-15 123.2 19.7 260 376-643 303-602 (791)
24 PF10508 Proteasom_PSMB: Prote 99.2 3.4E-09 7.4E-14 119.1 26.9 274 381-663 42-322 (503)
25 cd00020 ARM Armadillo/beta-cat 99.2 3.2E-10 7E-15 101.6 12.8 118 414-532 2-120 (120)
26 PF15227 zf-C3HC4_4: zinc fing 99.1 2.3E-11 5E-16 87.1 3.0 39 282-320 1-42 (42)
27 cd00020 ARM Armadillo/beta-cat 99.1 7.7E-10 1.7E-14 99.1 13.4 117 455-574 2-120 (120)
28 PLN03208 E3 ubiquitin-protein 99.1 6.4E-11 1.4E-15 112.1 4.2 59 275-333 14-87 (193)
29 TIGR00599 rad18 DNA repair pro 99.1 1.5E-10 3.2E-15 122.8 6.2 72 275-347 22-93 (397)
30 PRK09687 putative lyase; Provi 99.0 3.3E-08 7.2E-13 102.4 21.4 235 374-656 20-278 (280)
31 KOG1222 Kinesin associated pro 99.0 8.7E-09 1.9E-13 108.0 15.5 197 434-638 278-474 (791)
32 PF03224 V-ATPase_H_N: V-ATPas 99.0 8.1E-09 1.7E-13 109.3 14.9 234 420-656 56-310 (312)
33 KOG0946 ER-Golgi vesicle-tethe 98.9 5.2E-07 1.1E-11 100.1 26.3 292 378-675 23-364 (970)
34 KOG0823 Predicted E3 ubiquitin 98.9 8.3E-10 1.8E-14 106.2 2.6 59 276-334 44-104 (230)
35 KOG0287 Postreplication repair 98.9 7.6E-10 1.6E-14 110.6 1.8 71 275-346 19-89 (442)
36 PF13923 zf-C3HC4_2: Zinc fing 98.8 1.9E-09 4.2E-14 76.3 3.1 38 282-320 1-39 (39)
37 KOG0168 Putative ubiquitin fus 98.8 2.7E-07 5.9E-12 103.0 19.7 257 378-642 168-437 (1051)
38 KOG4500 Rho/Rac GTPase guanine 98.8 5.9E-07 1.3E-11 93.6 20.5 279 378-660 224-519 (604)
39 PF03224 V-ATPase_H_N: V-ATPas 98.8 4.3E-07 9.3E-12 96.1 20.3 213 381-595 62-292 (312)
40 cd00256 VATPase_H VATPase_H, r 98.7 2.4E-06 5.3E-11 92.4 24.0 274 381-658 105-423 (429)
41 PF13445 zf-RING_UBOX: RING-ty 98.7 9E-09 2E-13 73.7 2.7 36 282-318 1-43 (43)
42 KOG0317 Predicted E3 ubiquitin 98.7 1E-08 2.3E-13 101.5 3.7 54 275-329 235-288 (293)
43 PRK09687 putative lyase; Provi 98.7 5.6E-07 1.2E-11 93.3 16.4 194 419-656 23-217 (280)
44 KOG2160 Armadillo/beta-catenin 98.7 2.5E-06 5.3E-11 88.3 20.8 186 387-574 93-282 (342)
45 KOG4642 Chaperone-dependent E3 98.7 3.8E-07 8.3E-12 88.5 13.8 248 50-349 22-281 (284)
46 KOG0168 Putative ubiquitin fus 98.7 6.8E-07 1.5E-11 99.9 17.2 217 375-597 209-437 (1051)
47 PF00097 zf-C3HC4: Zinc finger 98.6 2.2E-08 4.7E-13 71.8 3.5 39 282-320 1-41 (41)
48 PRK13800 putative oxidoreducta 98.6 4.4E-06 9.6E-11 100.7 23.9 216 378-658 622-865 (897)
49 PRK13800 putative oxidoreducta 98.6 9.2E-06 2E-10 98.0 26.0 228 377-657 652-896 (897)
50 cd00256 VATPase_H VATPase_H, r 98.6 4.4E-06 9.5E-11 90.4 20.7 237 377-617 143-426 (429)
51 PF14835 zf-RING_6: zf-RING of 98.6 1.3E-08 2.8E-13 77.7 0.9 59 278-339 6-65 (65)
52 PF13920 zf-C3HC4_3: Zinc fing 98.6 3.9E-08 8.6E-13 73.8 3.2 47 278-325 1-48 (50)
53 COG5432 RAD18 RING-finger-cont 98.6 2.9E-08 6.4E-13 97.3 3.0 70 275-345 21-90 (391)
54 PHA02929 N1R/p28-like protein; 98.5 6.1E-08 1.3E-12 96.2 4.4 48 277-325 172-227 (238)
55 PF11789 zf-Nse: Zinc-finger o 98.5 4E-08 8.6E-13 75.2 1.9 44 278-321 10-55 (57)
56 KOG0320 Predicted E3 ubiquitin 98.5 9.1E-08 2E-12 88.1 3.7 55 276-331 128-184 (187)
57 PF13639 zf-RING_2: Ring finge 98.5 7.3E-08 1.6E-12 70.2 2.2 40 281-321 2-44 (44)
58 KOG4646 Uncharacterized conser 98.4 1E-06 2.2E-11 78.1 9.1 152 458-612 14-166 (173)
59 cd00162 RING RING-finger (Real 98.4 2.7E-07 5.9E-12 67.1 3.9 43 281-323 1-44 (45)
60 PF01602 Adaptin_N: Adaptin N 98.4 3.1E-05 6.6E-10 88.2 22.0 258 375-662 112-371 (526)
61 KOG0978 E3 ubiquitin ligase in 98.4 1.6E-05 3.5E-10 89.3 18.0 55 277-331 641-695 (698)
62 KOG2177 Predicted E3 ubiquitin 98.3 3.3E-07 7.2E-12 97.1 3.9 71 275-348 9-79 (386)
63 PF01602 Adaptin_N: Adaptin N 98.3 3.1E-05 6.8E-10 88.2 20.1 255 376-660 78-333 (526)
64 KOG2160 Armadillo/beta-catenin 98.3 3.2E-05 6.9E-10 80.2 18.0 186 429-617 93-283 (342)
65 smart00184 RING Ring finger. E 98.3 7E-07 1.5E-11 62.6 3.9 39 282-320 1-39 (39)
66 PHA02926 zinc finger-like prot 98.3 5.9E-07 1.3E-11 85.9 3.8 51 275-325 166-230 (242)
67 KOG0311 Predicted E3 ubiquitin 98.3 1.6E-07 3.5E-12 95.3 -0.1 69 275-343 39-109 (381)
68 KOG4646 Uncharacterized conser 98.3 6.3E-06 1.4E-10 73.1 9.8 122 377-500 16-139 (173)
69 TIGR00570 cdk7 CDK-activating 98.2 1.7E-06 3.6E-11 88.4 5.8 52 278-329 2-58 (309)
70 KOG1293 Proteins containing ar 98.2 0.00018 3.9E-09 79.4 20.5 225 410-641 368-600 (678)
71 KOG2171 Karyopherin (importin) 98.2 6.6E-05 1.4E-09 87.6 18.0 254 378-639 349-614 (1075)
72 KOG2660 Locus-specific chromos 98.2 1.2E-06 2.6E-11 88.8 3.3 67 275-342 11-82 (331)
73 KOG3678 SARM protein (with ste 98.1 9E-05 2E-09 78.2 17.0 259 378-660 181-452 (832)
74 KOG2164 Predicted E3 ubiquitin 98.1 1.6E-06 3.4E-11 92.8 3.3 72 277-348 184-263 (513)
75 PF14634 zf-RING_5: zinc-RING 98.1 2.3E-06 5E-11 62.2 3.2 41 281-322 1-44 (44)
76 COG5574 PEX10 RING-finger-cont 98.1 1.6E-06 3.5E-11 85.1 3.0 52 275-326 211-263 (271)
77 PF05536 Neurochondrin: Neuroc 98.1 9.4E-05 2E-09 83.7 16.8 153 461-619 6-171 (543)
78 KOG2171 Karyopherin (importin) 98.1 0.00053 1.2E-08 80.3 22.6 281 378-668 160-512 (1075)
79 KOG2973 Uncharacterized conser 98.0 0.00092 2E-08 67.8 21.2 271 379-660 5-315 (353)
80 KOG2759 Vacuolar H+-ATPase V1 98.0 0.0003 6.5E-09 74.1 18.0 234 380-617 159-439 (442)
81 COG5113 UFD2 Ubiquitin fusion 98.0 3.6E-05 7.9E-10 83.6 10.6 73 275-348 850-923 (929)
82 PF05536 Neurochondrin: Neuroc 98.0 0.00044 9.5E-09 78.3 19.5 235 378-617 6-262 (543)
83 PF00514 Arm: Armadillo/beta-c 98.0 1E-05 2.3E-10 57.8 4.2 40 408-447 1-40 (41)
84 COG5222 Uncharacterized conser 97.9 1.1E-05 2.3E-10 79.9 5.2 67 280-346 275-343 (427)
85 KOG1789 Endocytosis protein RM 97.9 0.0015 3.3E-08 75.1 22.5 257 380-643 1774-2142(2235)
86 KOG2759 Vacuolar H+-ATPase V1 97.9 0.0018 3.9E-08 68.4 21.1 272 380-658 117-436 (442)
87 PF12678 zf-rbx1: RING-H2 zinc 97.8 1.5E-05 3.3E-10 64.7 3.9 40 281-321 21-73 (73)
88 PF14664 RICTOR_N: Rapamycin-i 97.8 0.0047 1E-07 66.6 23.8 266 385-659 33-363 (371)
89 KOG1293 Proteins containing ar 97.8 0.0004 8.7E-09 76.7 15.3 154 389-543 389-545 (678)
90 PTZ00429 beta-adaptin; Provisi 97.7 0.01 2.2E-07 69.5 25.9 251 379-659 34-284 (746)
91 KOG2973 Uncharacterized conser 97.7 0.0056 1.2E-07 62.2 20.2 235 376-616 43-315 (353)
92 KOG2042 Ubiquitin fusion degra 97.7 3.8E-05 8.3E-10 88.9 5.5 72 275-347 866-938 (943)
93 KOG4159 Predicted E3 ubiquitin 97.7 2.5E-05 5.5E-10 83.4 3.7 70 275-345 80-154 (398)
94 TIGR02270 conserved hypothetic 97.7 0.0036 7.7E-08 68.3 20.2 188 421-661 88-297 (410)
95 KOG2023 Nuclear transport rece 97.7 0.00046 9.9E-09 76.1 12.9 274 378-662 129-465 (885)
96 PTZ00429 beta-adaptin; Provisi 97.6 0.016 3.6E-07 67.7 25.5 258 378-660 69-326 (746)
97 KOG2734 Uncharacterized conser 97.6 0.02 4.4E-07 60.8 23.3 219 397-619 104-349 (536)
98 KOG0946 ER-Golgi vesicle-tethe 97.5 0.0058 1.3E-07 69.0 19.3 239 379-618 63-348 (970)
99 KOG0297 TNF receptor-associate 97.5 6.7E-05 1.5E-09 81.3 3.4 67 276-343 18-86 (391)
100 PF12348 CLASP_N: CLASP N term 97.5 0.0019 4.2E-08 65.0 13.4 181 386-574 16-206 (228)
101 KOG2734 Uncharacterized conser 97.4 0.045 9.8E-07 58.3 23.0 237 378-617 126-401 (536)
102 PF00514 Arm: Armadillo/beta-c 97.4 0.00027 5.8E-09 50.4 4.6 41 575-616 1-41 (41)
103 KOG4413 26S proteasome regulat 97.4 0.018 3.9E-07 58.9 19.0 235 378-616 129-377 (524)
104 KOG3678 SARM protein (with ste 97.4 0.0023 5E-08 67.9 13.0 173 412-588 173-350 (832)
105 KOG0212 Uncharacterized conser 97.4 0.0034 7.5E-08 68.3 14.3 233 378-617 209-445 (675)
106 PF13646 HEAT_2: HEAT repeats; 97.3 0.00088 1.9E-08 56.3 7.6 86 379-485 1-87 (88)
107 KOG4413 26S proteasome regulat 97.3 0.037 8E-07 56.7 19.7 265 390-659 95-376 (524)
108 PF05659 RPW8: Arabidopsis bro 97.3 0.0017 3.6E-08 60.3 9.5 96 43-141 25-121 (147)
109 PF10165 Ric8: Guanine nucleot 97.3 0.027 5.9E-07 62.5 20.5 235 388-624 43-345 (446)
110 KOG0824 Predicted E3 ubiquitin 97.2 0.00013 2.9E-09 73.0 2.0 48 280-327 8-55 (324)
111 smart00185 ARM Armadillo/beta- 97.2 0.00059 1.3E-08 48.3 4.9 40 409-448 2-41 (41)
112 PF10165 Ric8: Guanine nucleot 97.2 0.019 4.1E-07 63.8 18.8 263 398-662 2-339 (446)
113 PF14664 RICTOR_N: Rapamycin-i 97.2 0.032 7E-07 60.2 19.8 252 401-660 7-269 (371)
114 TIGR02270 conserved hypothetic 97.2 0.032 6.9E-07 61.0 19.6 153 419-616 54-207 (410)
115 KOG4628 Predicted E3 ubiquitin 97.2 0.00023 5E-09 74.2 2.9 47 280-326 230-279 (348)
116 KOG1059 Vesicle coat complex A 97.2 0.025 5.4E-07 63.5 18.6 256 375-657 179-440 (877)
117 COG5243 HRD1 HRD ubiquitin lig 97.2 0.00026 5.6E-09 72.5 3.0 47 277-324 285-344 (491)
118 PF12861 zf-Apc11: Anaphase-pr 97.2 0.00046 9.9E-09 56.7 3.9 47 279-325 32-82 (85)
119 COG5152 Uncharacterized conser 97.1 0.00016 3.5E-09 67.6 1.2 45 279-324 196-240 (259)
120 PF13646 HEAT_2: HEAT repeats; 97.1 0.0016 3.4E-08 54.7 7.2 86 421-528 1-88 (88)
121 KOG0802 E3 ubiquitin ligase [P 97.1 0.00021 4.5E-09 81.3 2.1 47 277-324 289-340 (543)
122 KOG1813 Predicted E3 ubiquitin 97.1 0.0002 4.4E-09 71.6 1.5 59 279-339 241-299 (313)
123 PF11841 DUF3361: Domain of un 97.1 0.011 2.4E-07 55.2 12.6 125 502-627 10-142 (160)
124 KOG1242 Protein containing ada 97.0 0.047 1E-06 60.7 19.1 271 378-666 135-450 (569)
125 COG1413 FOG: HEAT repeat [Ener 97.0 0.11 2.4E-06 55.5 21.9 185 377-613 43-239 (335)
126 KOG0212 Uncharacterized conser 97.0 0.02 4.4E-07 62.6 15.5 239 415-661 163-407 (675)
127 PF12348 CLASP_N: CLASP N term 97.0 0.0058 1.3E-07 61.5 10.9 187 471-665 17-211 (228)
128 COG5369 Uncharacterized conser 96.9 0.0039 8.4E-08 67.5 9.4 163 379-542 433-604 (743)
129 KOG1002 Nucleotide excision re 96.9 0.00041 8.9E-09 74.0 2.1 54 276-329 533-590 (791)
130 KOG1059 Vesicle coat complex A 96.9 0.29 6.3E-06 55.3 23.7 219 375-617 142-366 (877)
131 COG5369 Uncharacterized conser 96.9 0.0058 1.3E-07 66.2 10.2 260 396-659 408-740 (743)
132 COG5540 RING-finger-containing 96.8 0.00068 1.5E-08 67.8 2.7 46 280-325 324-372 (374)
133 KOG1517 Guanine nucleotide bin 96.8 0.046 1E-06 63.7 17.1 220 396-618 489-734 (1387)
134 KOG2879 Predicted E3 ubiquitin 96.8 0.0013 2.7E-08 65.3 4.1 50 276-325 236-287 (298)
135 KOG1077 Vesicle coat complex A 96.8 0.13 2.8E-06 57.9 19.6 270 384-672 153-445 (938)
136 KOG1789 Endocytosis protein RM 96.7 0.39 8.5E-06 56.3 23.0 136 394-532 1742-1883(2235)
137 KOG1824 TATA-binding protein-i 96.7 0.034 7.4E-07 64.2 14.6 269 381-662 9-289 (1233)
138 KOG2023 Nuclear transport rece 96.6 0.053 1.2E-06 60.4 15.4 173 418-593 127-306 (885)
139 COG1413 FOG: HEAT repeat [Ener 96.6 0.14 3.1E-06 54.6 18.5 155 419-617 43-210 (335)
140 KOG1242 Protein containing ada 96.5 0.1 2.2E-06 58.1 16.7 227 375-618 252-485 (569)
141 COG5240 SEC21 Vesicle coat com 96.4 0.58 1.3E-05 51.6 21.5 259 378-662 265-557 (898)
142 KOG1824 TATA-binding protein-i 96.3 0.073 1.6E-06 61.6 14.8 251 376-640 46-307 (1233)
143 smart00185 ARM Armadillo/beta- 96.3 0.0084 1.8E-07 42.2 5.0 40 450-490 2-41 (41)
144 COG5231 VMA13 Vacuolar H+-ATPa 96.2 0.13 2.9E-06 52.6 14.6 228 430-659 160-427 (432)
145 PF11841 DUF3361: Domain of un 96.2 0.077 1.7E-06 49.6 12.0 119 538-658 5-129 (160)
146 KOG4367 Predicted Zn-finger pr 96.2 0.002 4.3E-08 67.3 1.5 35 277-311 2-36 (699)
147 KOG0804 Cytoplasmic Zn-finger 96.1 0.0023 5E-08 67.6 1.5 48 275-325 171-222 (493)
148 KOG3039 Uncharacterized conser 96.1 0.0037 7.9E-08 60.9 2.6 54 277-331 219-276 (303)
149 KOG0826 Predicted E3 ubiquitin 96.1 0.0053 1.2E-07 62.5 3.7 50 275-325 296-346 (357)
150 PF04641 Rtf2: Rtf2 RING-finge 96.1 0.0049 1.1E-07 63.3 3.6 53 276-330 110-166 (260)
151 KOG2259 Uncharacterized conser 96.0 0.11 2.4E-06 58.0 13.6 222 382-624 203-482 (823)
152 COG5231 VMA13 Vacuolar H+-ATPa 96.0 0.26 5.5E-06 50.7 15.0 223 390-615 162-427 (432)
153 KOG3036 Protein involved in ce 95.9 0.61 1.3E-05 46.4 16.9 182 433-616 93-291 (293)
154 COG5096 Vesicle coat complex, 95.9 0.28 6.1E-06 56.8 17.0 168 386-574 28-195 (757)
155 PF13513 HEAT_EZ: HEAT-like re 95.9 0.012 2.5E-07 44.8 4.0 55 475-530 1-55 (55)
156 KOG0289 mRNA splicing factor [ 95.9 0.0052 1.1E-07 64.7 2.7 51 280-331 1-52 (506)
157 KOG1062 Vesicle coat complex A 95.8 0.3 6.4E-06 55.9 16.3 258 377-670 313-591 (866)
158 KOG1517 Guanine nucleotide bin 95.8 0.36 7.7E-06 56.7 16.9 229 421-658 474-730 (1387)
159 KOG3036 Protein involved in ce 95.8 0.44 9.5E-06 47.3 15.2 149 391-541 93-256 (293)
160 KOG1241 Karyopherin (importin) 95.7 0.66 1.4E-05 52.9 18.5 272 377-662 129-437 (859)
161 PF04063 DUF383: Domain of unk 95.7 0.075 1.6E-06 51.8 10.0 127 514-644 6-159 (192)
162 PF13513 HEAT_EZ: HEAT-like re 95.6 0.027 5.8E-07 42.8 5.2 55 433-488 1-55 (55)
163 PF14668 RICTOR_V: Rapamycin-i 95.6 0.049 1.1E-06 44.0 6.8 67 520-586 4-70 (73)
164 KOG4172 Predicted E3 ubiquitin 95.6 0.0036 7.7E-08 46.1 0.2 45 280-324 8-53 (62)
165 KOG1645 RING-finger-containing 95.6 0.0065 1.4E-07 63.5 2.1 60 279-338 4-69 (463)
166 KOG2259 Uncharacterized conser 95.6 0.084 1.8E-06 58.9 10.6 224 378-620 235-515 (823)
167 PF09759 Atx10homo_assoc: Spin 95.5 0.067 1.5E-06 46.2 7.7 64 561-626 2-68 (102)
168 PF04078 Rcd1: Cell differenti 95.5 0.41 9E-06 48.3 14.3 195 390-584 8-228 (262)
169 KOG3800 Predicted E3 ubiquitin 95.4 0.01 2.2E-07 59.7 2.8 49 281-329 2-55 (300)
170 PF11698 V-ATPase_H_C: V-ATPas 95.4 0.044 9.6E-07 48.6 6.6 69 378-446 44-113 (119)
171 KOG1248 Uncharacterized conser 95.4 0.51 1.1E-05 56.3 17.0 218 429-660 664-898 (1176)
172 KOG0828 Predicted E3 ubiquitin 95.4 0.0079 1.7E-07 64.2 2.2 50 276-325 568-634 (636)
173 KOG1241 Karyopherin (importin) 95.4 1.1 2.3E-05 51.3 18.6 274 378-661 365-669 (859)
174 KOG1734 Predicted RING-contain 95.4 0.0037 8E-08 61.7 -0.5 55 277-331 222-287 (328)
175 KOG2611 Neurochondrin/leucine- 95.3 0.39 8.4E-06 51.9 14.1 179 466-656 17-221 (698)
176 COG5181 HSH155 U2 snRNP splice 95.3 0.36 7.8E-06 53.6 14.0 233 421-660 606-870 (975)
177 KOG1039 Predicted E3 ubiquitin 95.1 0.012 2.6E-07 61.9 2.4 50 276-325 158-221 (344)
178 PF04063 DUF383: Domain of unk 95.0 0.16 3.5E-06 49.5 9.8 124 430-553 6-156 (192)
179 PF13764 E3_UbLigase_R4: E3 ub 95.0 2 4.4E-05 50.7 20.4 224 414-642 112-387 (802)
180 PF11793 FANCL_C: FANCL C-term 95.0 0.0062 1.3E-07 49.0 -0.1 47 279-325 2-66 (70)
181 KOG0213 Splicing factor 3b, su 94.9 0.56 1.2E-05 53.2 14.6 229 423-659 803-1064(1172)
182 KOG1061 Vesicle coat complex A 94.9 0.31 6.6E-06 55.7 12.8 74 375-451 119-192 (734)
183 PF04078 Rcd1: Cell differenti 94.9 0.25 5.4E-06 49.8 10.7 149 392-542 65-228 (262)
184 KOG1062 Vesicle coat complex A 94.7 8.6 0.00019 44.6 23.2 73 372-449 137-209 (866)
185 PF09759 Atx10homo_assoc: Spin 94.6 0.14 2.9E-06 44.3 7.2 64 394-457 3-69 (102)
186 smart00744 RINGv The RING-vari 94.5 0.051 1.1E-06 40.3 3.7 41 281-321 1-49 (49)
187 PF02891 zf-MIZ: MIZ/SP-RING z 94.3 0.048 1E-06 40.6 3.3 44 280-323 3-50 (50)
188 KOG2817 Predicted E3 ubiquitin 94.3 0.032 6.9E-07 58.8 3.0 46 278-323 333-383 (394)
189 KOG3039 Uncharacterized conser 94.3 0.029 6.3E-07 54.8 2.5 38 275-312 39-76 (303)
190 COG5181 HSH155 U2 snRNP splice 94.2 2.3 5.1E-05 47.5 17.0 151 376-532 603-759 (975)
191 COG5219 Uncharacterized conser 94.1 0.019 4.1E-07 65.8 1.0 50 276-325 1466-1523(1525)
192 COG5215 KAP95 Karyopherin (imp 94.0 4.5 9.7E-05 45.0 18.4 272 378-663 134-440 (858)
193 KOG2979 Protein involved in DN 93.8 0.053 1.2E-06 53.8 3.3 44 278-321 175-220 (262)
194 COG5194 APC11 Component of SCF 93.8 0.067 1.5E-06 42.9 3.2 46 279-325 31-81 (88)
195 KOG1077 Vesicle coat complex A 93.7 4.4 9.5E-05 46.2 18.2 263 373-661 107-399 (938)
196 KOG1078 Vesicle coat complex C 93.7 2.4 5.1E-05 48.8 16.3 259 378-663 246-535 (865)
197 PF14570 zf-RING_4: RING/Ubox 93.6 0.049 1.1E-06 39.9 2.0 43 282-324 1-47 (48)
198 KOG2999 Regulator of Rac1, req 93.6 1.6 3.5E-05 48.1 14.3 157 462-621 85-247 (713)
199 PF06371 Drf_GBD: Diaphanous G 93.5 0.66 1.4E-05 44.9 10.6 79 537-616 100-187 (187)
200 PF12717 Cnd1: non-SMC mitotic 93.4 3.7 7.9E-05 39.5 15.5 92 390-491 1-93 (178)
201 KOG0825 PHD Zn-finger protein 93.4 0.017 3.7E-07 64.8 -0.8 49 277-326 121-172 (1134)
202 KOG0827 Predicted E3 ubiquitin 93.4 0.056 1.2E-06 56.3 2.8 49 279-327 4-58 (465)
203 PF08569 Mo25: Mo25-like; Int 93.4 1.1 2.4E-05 47.6 12.7 196 377-576 76-285 (335)
204 KOG2274 Predicted importin 9 [ 93.2 2 4.3E-05 50.1 15.0 228 429-663 460-693 (1005)
205 KOG4151 Myosin assembly protei 93.1 0.93 2E-05 52.2 12.2 194 447-650 491-689 (748)
206 PF14447 Prok-RING_4: Prokaryo 93.1 0.048 1E-06 40.8 1.3 47 278-327 6-52 (55)
207 KOG1061 Vesicle coat complex A 93.1 0.39 8.4E-06 54.9 9.1 150 376-535 85-234 (734)
208 KOG1785 Tyrosine kinase negati 93.0 0.043 9.3E-07 57.2 1.3 46 281-326 371-417 (563)
209 COG5175 MOT2 Transcriptional r 92.7 0.079 1.7E-06 54.1 2.7 49 280-328 15-67 (480)
210 KOG0213 Splicing factor 3b, su 92.6 4.3 9.3E-05 46.5 16.0 120 381-514 845-971 (1172)
211 KOG2611 Neurochondrin/leucine- 92.6 12 0.00025 41.0 18.5 229 382-616 16-274 (698)
212 PF05004 IFRD: Interferon-rela 92.5 5.8 0.00013 41.8 16.5 189 465-662 48-259 (309)
213 PF12755 Vac14_Fab1_bd: Vacuol 92.4 0.55 1.2E-05 40.3 7.2 69 587-659 28-96 (97)
214 PF12719 Cnd3: Nuclear condens 92.4 3.3 7.2E-05 43.4 14.7 190 419-617 26-234 (298)
215 KOG1060 Vesicle coat complex A 92.3 6.6 0.00014 45.4 17.2 209 380-617 38-247 (968)
216 KOG4692 Predicted E3 ubiquitin 92.3 0.083 1.8E-06 54.3 2.3 47 277-324 420-466 (489)
217 PF12755 Vac14_Fab1_bd: Vacuol 92.3 0.42 9E-06 41.1 6.3 70 502-573 26-95 (97)
218 KOG0567 HEAT repeat-containing 92.2 15 0.00032 37.3 18.0 198 417-659 65-279 (289)
219 PF06371 Drf_GBD: Diaphanous G 92.2 0.88 1.9E-05 44.0 9.4 109 378-489 67-186 (187)
220 PF08569 Mo25: Mo25-like; Int 92.0 8 0.00017 41.2 16.9 219 414-641 71-307 (335)
221 KOG3113 Uncharacterized conser 91.9 0.14 3.1E-06 50.4 3.2 50 277-329 109-162 (293)
222 KOG4265 Predicted E3 ubiquitin 91.9 0.1 2.2E-06 54.4 2.4 46 279-325 290-336 (349)
223 KOG4151 Myosin assembly protei 91.7 4.8 0.00011 46.5 15.5 244 403-656 488-737 (748)
224 KOG1571 Predicted E3 ubiquitin 91.5 0.097 2.1E-06 54.5 1.8 47 275-325 301-347 (355)
225 KOG1240 Protein kinase contain 91.5 5.4 0.00012 48.2 15.9 266 379-661 424-726 (1431)
226 COG5220 TFB3 Cdk activating ki 91.5 0.059 1.3E-06 52.4 0.2 47 279-325 10-64 (314)
227 KOG1001 Helicase-like transcri 91.5 0.041 8.9E-07 63.6 -1.0 47 280-327 455-502 (674)
228 KOG1248 Uncharacterized conser 91.4 5.8 0.00013 47.9 16.1 226 388-624 665-906 (1176)
229 PF05004 IFRD: Interferon-rela 91.3 8 0.00017 40.8 16.0 184 426-616 50-257 (309)
230 PF11701 UNC45-central: Myosin 91.1 0.64 1.4E-05 43.8 6.8 147 461-612 4-155 (157)
231 PF11698 V-ATPase_H_C: V-ATPas 90.9 0.46 9.9E-06 42.2 5.1 80 536-616 33-115 (119)
232 KOG0301 Phospholipase A2-activ 90.8 8.3 0.00018 43.8 15.8 173 384-564 551-736 (745)
233 PF02985 HEAT: HEAT repeat; I 90.7 0.31 6.8E-06 32.2 3.1 29 421-449 2-30 (31)
234 COG5096 Vesicle coat complex, 90.7 5.4 0.00012 46.6 14.9 141 378-533 56-196 (757)
235 PF08045 CDC14: Cell division 90.7 2.6 5.7E-05 42.8 11.1 96 394-489 108-206 (257)
236 KOG1493 Anaphase-promoting com 90.5 0.13 2.9E-06 40.9 1.3 49 277-325 29-81 (84)
237 PF12717 Cnd1: non-SMC mitotic 90.3 12 0.00027 35.8 15.2 91 475-575 2-93 (178)
238 KOG1058 Vesicle coat complex C 90.2 7.9 0.00017 44.6 15.1 202 390-618 219-465 (948)
239 PF12031 DUF3518: Domain of un 90.0 0.83 1.8E-05 45.5 6.5 91 560-651 139-236 (257)
240 KOG2999 Regulator of Rac1, req 89.9 3.9 8.4E-05 45.3 12.1 157 504-662 84-245 (713)
241 PF08045 CDC14: Cell division 89.9 2.9 6.4E-05 42.5 10.6 100 518-617 106-208 (257)
242 PF05918 API5: Apoptosis inhib 89.7 7.2 0.00016 44.1 14.5 129 380-528 26-158 (556)
243 PF06025 DUF913: Domain of Unk 89.7 18 0.00039 39.3 17.3 82 391-472 123-208 (379)
244 PF05290 Baculo_IE-1: Baculovi 89.6 0.36 7.8E-06 43.0 3.3 51 278-328 79-135 (140)
245 PF12031 DUF3518: Domain of un 89.4 0.99 2.1E-05 44.9 6.6 81 518-598 139-228 (257)
246 KOG2114 Vacuolar assembly/sort 89.0 1.1 2.3E-05 51.9 7.4 43 276-322 837-880 (933)
247 KOG4653 Uncharacterized conser 89.0 5.4 0.00012 46.5 12.9 219 431-661 739-965 (982)
248 PF07814 WAPL: Wings apart-lik 88.9 14 0.00029 40.0 15.7 234 377-619 21-302 (361)
249 KOG4185 Predicted E3 ubiquitin 88.5 0.43 9.4E-06 50.1 3.8 63 280-342 4-77 (296)
250 KOG2025 Chromosome condensatio 88.5 24 0.00052 40.6 17.2 112 375-494 83-194 (892)
251 PF08324 PUL: PUL domain; Int 88.4 3.5 7.5E-05 42.5 10.5 187 422-608 66-266 (268)
252 COG5240 SEC21 Vesicle coat com 88.4 15 0.00033 41.1 15.2 107 378-492 224-334 (898)
253 KOG2274 Predicted importin 9 [ 87.7 35 0.00076 40.4 18.2 161 458-624 528-697 (1005)
254 COG5209 RCD1 Uncharacterized p 87.5 1.4 2.9E-05 43.3 6.0 96 561-657 116-215 (315)
255 PF13764 E3_UbLigase_R4: E3 ub 87.2 74 0.0016 38.0 23.2 210 379-591 119-381 (802)
256 KOG0567 HEAT repeat-containing 87.1 22 0.00049 36.1 14.4 192 378-613 68-277 (289)
257 KOG1943 Beta-tubulin folding c 87.1 55 0.0012 39.6 19.7 261 373-661 337-616 (1133)
258 COG5627 MMS21 DNA repair prote 87.1 0.51 1.1E-05 46.1 2.9 57 279-335 189-249 (275)
259 KOG0211 Protein phosphatase 2A 86.7 30 0.00065 41.0 17.5 218 420-654 438-658 (759)
260 PF11707 Npa1: Ribosome 60S bi 86.7 21 0.00046 38.0 15.4 156 421-577 58-240 (330)
261 PF14668 RICTOR_V: Rapamycin-i 86.6 3.6 7.9E-05 33.3 7.2 65 562-628 4-68 (73)
262 KOG3665 ZYG-1-like serine/thre 86.5 19 0.00041 42.5 16.0 198 394-611 489-692 (699)
263 PF11707 Npa1: Ribosome 60S bi 86.4 30 0.00066 36.8 16.4 157 378-536 57-241 (330)
264 KOG4362 Transcriptional regula 86.3 0.27 5.7E-06 56.0 0.7 66 277-342 19-86 (684)
265 PF12460 MMS19_C: RNAPII trans 86.1 17 0.00036 40.1 14.7 187 461-660 190-394 (415)
266 KOG3161 Predicted E3 ubiquitin 85.7 0.44 9.4E-06 53.0 1.9 39 277-318 9-51 (861)
267 COG5215 KAP95 Karyopherin (imp 85.4 61 0.0013 36.6 17.7 278 378-661 367-669 (858)
268 KOG1058 Vesicle coat complex C 85.1 9.9 0.00021 43.8 12.0 49 604-662 376-424 (948)
269 KOG1240 Protein kinase contain 84.9 26 0.00055 42.8 15.7 231 377-617 462-726 (1431)
270 KOG0298 DEAD box-containing he 84.8 0.28 6E-06 59.0 -0.1 48 275-323 1149-1197(1394)
271 KOG2062 26S proteasome regulat 84.5 12 0.00026 43.1 12.2 134 418-569 553-689 (929)
272 PF06025 DUF913: Domain of Unk 84.5 38 0.00081 36.9 16.1 95 459-553 105-205 (379)
273 COG5209 RCD1 Uncharacterized p 84.5 3.6 7.8E-05 40.5 7.3 146 392-539 115-275 (315)
274 PF12460 MMS19_C: RNAPII trans 84.5 22 0.00048 39.2 14.8 152 476-639 249-414 (415)
275 KOG3002 Zn finger protein [Gen 84.2 0.91 2E-05 47.3 3.4 62 275-343 44-106 (299)
276 PF02985 HEAT: HEAT repeat; I 84.2 1.4 3E-05 29.0 3.1 28 505-532 2-29 (31)
277 KOG2956 CLIP-associating prote 83.3 42 0.00092 36.8 15.3 184 378-573 287-476 (516)
278 COG5109 Uncharacterized conser 82.8 0.89 1.9E-05 46.3 2.5 47 276-322 333-384 (396)
279 KOG0211 Protein phosphatase 2A 82.8 30 0.00066 40.9 15.3 266 379-661 357-626 (759)
280 KOG0883 Cyclophilin type, U bo 82.7 0.96 2.1E-05 47.5 2.8 52 279-331 40-91 (518)
281 KOG1814 Predicted E3 ubiquitin 81.8 1.6 3.4E-05 46.5 4.0 35 278-312 183-220 (445)
282 KOG1967 DNA repair/transcripti 81.6 4.6 0.0001 47.4 7.9 181 422-610 818-1018(1030)
283 COG5116 RPN2 26S proteasome re 81.5 19 0.00041 40.3 12.0 119 418-553 550-671 (926)
284 KOG1941 Acetylcholine receptor 81.5 0.64 1.4E-05 48.7 1.0 46 276-321 362-412 (518)
285 KOG1940 Zn-finger protein [Gen 81.4 0.95 2.1E-05 46.2 2.2 44 278-322 157-204 (276)
286 KOG1820 Microtubule-associated 80.4 25 0.00054 41.9 13.6 181 380-573 256-442 (815)
287 PF08324 PUL: PUL domain; Int 80.2 12 0.00026 38.4 10.1 183 379-563 65-263 (268)
288 PF10367 Vps39_2: Vacuolar sor 79.9 2.1 4.6E-05 37.2 3.7 34 274-307 73-108 (109)
289 KOG4464 Signaling protein RIC- 79.7 29 0.00063 37.4 12.3 81 391-471 111-198 (532)
290 KOG2930 SCF ubiquitin ligase, 79.6 1.5 3.2E-05 37.3 2.4 27 296-323 80-106 (114)
291 PF12719 Cnd3: Nuclear condens 79.5 40 0.00087 35.3 13.9 162 382-553 32-206 (298)
292 KOG4535 HEAT and armadillo rep 79.2 1.9 4E-05 46.9 3.6 182 432-617 404-604 (728)
293 PF11701 UNC45-central: Myosin 79.2 6 0.00013 37.2 6.8 107 380-487 46-156 (157)
294 KOG4653 Uncharacterized conser 79.1 34 0.00074 40.3 13.6 184 381-574 731-918 (982)
295 PF05918 API5: Apoptosis inhib 76.9 9.2 0.0002 43.3 8.3 95 378-485 60-157 (556)
296 PF12530 DUF3730: Protein of u 76.7 87 0.0019 31.5 17.5 136 381-531 4-150 (234)
297 KOG3665 ZYG-1-like serine/thre 76.3 42 0.00091 39.6 13.9 92 526-617 494-588 (699)
298 cd03569 VHS_Hrs_Vps27p VHS dom 76.3 13 0.00028 34.4 7.9 73 376-448 40-114 (142)
299 KOG2032 Uncharacterized conser 76.0 1.2E+02 0.0027 33.6 16.1 261 378-660 259-531 (533)
300 KOG4739 Uncharacterized protei 75.9 1 2.2E-05 44.7 0.5 40 290-332 15-55 (233)
301 KOG4275 Predicted E3 ubiquitin 75.9 0.67 1.5E-05 46.8 -0.7 42 278-324 299-341 (350)
302 KOG0414 Chromosome condensatio 74.7 14 0.00031 44.7 9.4 140 420-573 920-1063(1251)
303 PF05883 Baculo_RING: Baculovi 74.6 3.4 7.3E-05 37.4 3.3 44 279-323 26-78 (134)
304 KOG2062 26S proteasome regulat 74.4 1.8E+02 0.0039 34.0 17.4 99 502-615 553-652 (929)
305 KOG1820 Microtubule-associated 74.2 57 0.0012 39.0 14.2 195 420-626 254-453 (815)
306 KOG1943 Beta-tubulin folding c 73.9 1.1E+02 0.0024 37.2 16.1 223 418-663 340-576 (1133)
307 PF14225 MOR2-PAG1_C: Cell mor 73.7 67 0.0015 33.0 13.1 178 378-573 65-253 (262)
308 KOG1078 Vesicle coat complex C 73.6 1.9E+02 0.0042 34.0 19.4 110 376-492 204-313 (865)
309 PF12530 DUF3730: Protein of u 73.2 1.1E+02 0.0023 30.9 16.2 138 421-574 2-151 (234)
310 cd03572 ENTH_epsin_related ENT 73.2 11 0.00023 33.9 6.2 71 589-660 41-119 (122)
311 KOG0915 Uncharacterized conser 73.1 39 0.00084 42.3 12.5 263 379-663 820-1113(1702)
312 KOG2933 Uncharacterized conser 72.9 23 0.00049 36.8 9.2 145 376-532 87-234 (334)
313 smart00288 VHS Domain present 72.7 18 0.0004 32.9 7.9 73 376-448 36-111 (133)
314 cd03561 VHS VHS domain family; 72.4 22 0.00048 32.3 8.4 74 376-449 36-113 (133)
315 PF14666 RICTOR_M: Rapamycin-i 72.3 80 0.0017 31.6 12.9 130 517-659 78-224 (226)
316 KOG2025 Chromosome condensatio 71.5 66 0.0014 37.3 13.0 107 459-571 84-190 (892)
317 KOG1991 Nuclear transport rece 71.1 2E+02 0.0044 34.7 17.3 131 418-553 409-556 (1010)
318 KOG3970 Predicted E3 ubiquitin 70.7 8.3 0.00018 37.6 5.2 44 281-324 52-104 (299)
319 KOG3899 Uncharacterized conser 70.3 2.4 5.2E-05 42.9 1.6 32 297-328 325-368 (381)
320 PF11864 DUF3384: Domain of un 70.3 1.9E+02 0.0041 32.4 17.5 257 378-653 28-323 (464)
321 KOG1788 Uncharacterized conser 69.7 1.7E+02 0.0038 35.6 16.0 255 398-660 663-982 (2799)
322 KOG0915 Uncharacterized conser 69.7 2E+02 0.0042 36.6 17.2 181 390-575 970-1161(1702)
323 KOG1566 Conserved protein Mo25 69.3 1.4E+02 0.0031 31.2 14.0 197 378-576 80-288 (342)
324 KOG1788 Uncharacterized conser 69.3 99 0.0021 37.5 14.0 80 537-618 901-984 (2799)
325 PF05605 zf-Di19: Drought indu 69.2 2.5 5.3E-05 32.0 1.1 38 278-322 1-39 (54)
326 PHA03096 p28-like protein; Pro 69.1 3.1 6.7E-05 43.1 2.1 43 280-322 179-231 (284)
327 cd03568 VHS_STAM VHS domain fa 69.0 25 0.00054 32.6 7.9 74 376-449 36-111 (144)
328 KOG1812 Predicted E3 ubiquitin 68.1 4.4 9.6E-05 44.0 3.2 69 279-348 146-228 (384)
329 KOG4535 HEAT and armadillo rep 67.9 35 0.00075 37.6 9.6 264 391-663 269-562 (728)
330 cd03567 VHS_GGA VHS domain fam 67.7 30 0.00064 31.9 8.1 71 377-447 38-115 (139)
331 PF14569 zf-UDP: Zinc-binding 67.5 7.1 0.00015 31.6 3.4 46 280-325 10-62 (80)
332 KOG2956 CLIP-associating prote 67.0 1.9E+02 0.004 32.1 14.9 143 504-658 330-475 (516)
333 PF14726 RTTN_N: Rotatin, an a 66.5 41 0.00088 28.9 8.1 93 392-485 2-95 (98)
334 PHA02825 LAP/PHD finger-like p 66.1 6.2 0.00013 36.7 3.2 48 278-326 7-60 (162)
335 PF10272 Tmpp129: Putative tra 65.5 4.1 8.9E-05 43.5 2.3 28 301-328 315-354 (358)
336 PF14353 CpXC: CpXC protein 65.2 3.8 8.3E-05 37.0 1.8 47 279-325 1-49 (128)
337 PF08167 RIX1: rRNA processing 65.2 24 0.00051 33.5 7.2 109 461-573 26-142 (165)
338 KOG0414 Chromosome condensatio 65.0 58 0.0012 39.8 11.5 129 389-532 935-1064(1251)
339 cd03568 VHS_STAM VHS domain fa 65.0 20 0.00044 33.2 6.5 72 419-490 37-110 (144)
340 PF08746 zf-RING-like: RING-li 64.7 7.4 0.00016 27.9 2.8 39 282-320 1-43 (43)
341 PF07814 WAPL: Wings apart-lik 64.4 1.9E+02 0.0042 31.2 14.9 93 421-513 23-116 (361)
342 cd03569 VHS_Hrs_Vps27p VHS dom 64.3 21 0.00046 32.9 6.5 72 419-490 41-114 (142)
343 PF11865 DUF3385: Domain of un 63.5 51 0.0011 31.1 9.1 145 461-615 11-156 (160)
344 KOG2034 Vacuolar sorting prote 63.2 13 0.00029 43.6 5.9 38 275-312 813-852 (911)
345 KOG1060 Vesicle coat complex A 62.5 3.2E+02 0.007 32.3 17.6 197 423-653 39-239 (968)
346 PF14500 MMS19_N: Dos2-interac 61.4 2E+02 0.0043 29.5 16.0 221 423-662 3-239 (262)
347 KOG1991 Nuclear transport rece 61.4 3.7E+02 0.008 32.6 18.6 194 374-573 459-670 (1010)
348 cd03561 VHS VHS domain family; 61.2 32 0.00068 31.3 7.0 71 420-490 38-112 (133)
349 KOG2032 Uncharacterized conser 60.7 44 0.00096 36.9 8.9 141 428-574 267-415 (533)
350 KOG0825 PHD Zn-finger protein 60.6 7.6 0.00016 44.6 3.3 48 274-321 91-150 (1134)
351 smart00288 VHS Domain present 60.0 27 0.00059 31.8 6.4 71 420-490 38-111 (133)
352 PF14446 Prok-RING_1: Prokaryo 60.0 7.7 0.00017 29.3 2.2 29 279-307 5-37 (54)
353 PF14726 RTTN_N: Rotatin, an a 59.6 42 0.0009 28.9 6.9 74 497-571 24-97 (98)
354 KOG4718 Non-SMC (structural ma 59.0 4.9 0.00011 38.9 1.3 46 279-325 181-227 (235)
355 COG5218 YCG1 Chromosome conden 58.9 81 0.0017 35.8 10.5 110 375-492 89-198 (885)
356 PF03854 zf-P11: P-11 zinc fin 58.8 4.7 0.0001 29.3 0.8 31 295-326 17-47 (50)
357 KOG2038 CAATT-binding transcri 58.8 1.5E+02 0.0033 34.7 12.9 219 379-628 198-422 (988)
358 PRK14707 hypothetical protein; 58.5 5.9E+02 0.013 34.0 20.2 214 424-644 294-513 (2710)
359 PF10363 DUF2435: Protein of u 58.5 31 0.00068 29.2 6.0 70 378-449 4-73 (92)
360 KOG1020 Sister chromatid cohes 58.3 83 0.0018 39.6 11.4 138 419-572 816-958 (1692)
361 PLN03205 ATR interacting prote 58.3 91 0.002 33.6 10.4 123 431-553 384-544 (652)
362 PF14500 MMS19_N: Dos2-interac 58.1 2.3E+02 0.0049 29.1 16.4 214 383-617 5-238 (262)
363 KOG4464 Signaling protein RIC- 58.0 2.8E+02 0.0061 30.2 14.2 152 507-659 49-227 (532)
364 TIGR00634 recN DNA repair prot 57.9 3.4E+02 0.0073 31.3 16.4 78 51-134 180-263 (563)
365 KOG2137 Protein kinase [Signal 57.8 39 0.00084 39.1 8.2 132 416-553 386-517 (700)
366 COG5116 RPN2 26S proteasome re 57.1 35 0.00075 38.3 7.4 100 502-616 550-650 (926)
367 PF11865 DUF3385: Domain of un 56.2 58 0.0013 30.7 8.1 142 378-530 11-155 (160)
368 PF07191 zinc-ribbons_6: zinc- 56.0 0.81 1.8E-05 36.3 -3.7 41 279-325 1-41 (70)
369 KOG0392 SNF2 family DNA-depend 55.7 3.5E+02 0.0075 33.9 15.7 248 378-665 78-330 (1549)
370 KOG1243 Protein kinase [Genera 55.6 1.7E+02 0.0038 33.9 12.8 252 383-658 260-513 (690)
371 PF00790 VHS: VHS domain; Int 55.5 93 0.002 28.5 9.2 71 420-490 43-118 (140)
372 PF04499 SAPS: SIT4 phosphatas 55.0 81 0.0018 35.4 10.2 112 544-661 21-150 (475)
373 COG3813 Uncharacterized protei 54.6 14 0.0003 29.3 2.9 38 293-333 23-60 (84)
374 PHA02862 5L protein; Provision 54.3 11 0.00024 34.4 2.6 45 281-326 4-54 (156)
375 KOG3268 Predicted E3 ubiquitin 53.9 11 0.00024 35.3 2.7 45 281-325 167-228 (234)
376 COG5236 Uncharacterized conser 53.7 9.9 0.00022 39.5 2.5 47 277-323 59-106 (493)
377 PF06844 DUF1244: Protein of u 53.5 8.6 0.00019 30.0 1.6 13 300-312 11-23 (68)
378 COG5218 YCG1 Chromosome conden 53.2 1.1E+02 0.0025 34.6 10.5 98 503-608 91-191 (885)
379 PRK14707 hypothetical protein; 52.8 7.2E+02 0.016 33.3 19.7 258 394-659 223-487 (2710)
380 PRK12495 hypothetical protein; 52.7 11 0.00023 37.0 2.5 30 213-247 8-37 (226)
381 PF08216 CTNNBL: Catenin-beta- 52.4 14 0.00031 32.2 3.0 44 519-563 62-105 (108)
382 KOG0301 Phospholipase A2-activ 51.7 2.1E+02 0.0046 33.0 12.5 165 425-598 550-728 (745)
383 PF06676 DUF1178: Protein of u 51.4 6.1 0.00013 36.6 0.6 23 296-323 9-41 (148)
384 PF06497 DUF1098: Protein of u 51.3 1.2E+02 0.0027 25.8 8.3 70 20-91 14-88 (95)
385 PF10497 zf-4CXXC_R1: Zinc-fin 51.1 15 0.00033 32.0 3.0 25 298-322 37-69 (105)
386 PF08317 Spc7: Spc7 kinetochor 50.6 3.3E+02 0.0072 28.8 17.5 105 8-120 38-147 (325)
387 KOG1967 DNA repair/transcripti 50.1 44 0.00096 39.7 7.2 147 418-568 866-1018(1030)
388 PF00790 VHS: VHS domain; Int 49.9 64 0.0014 29.6 7.2 73 588-662 44-120 (140)
389 KOG1832 HIV-1 Vpr-binding prot 49.6 61 0.0013 38.4 8.0 132 414-545 596-786 (1516)
390 cd03567 VHS_GGA VHS domain fam 49.3 78 0.0017 29.1 7.5 74 587-662 39-118 (139)
391 PF10363 DUF2435: Protein of u 48.6 59 0.0013 27.5 6.1 76 547-626 6-82 (92)
392 COG2176 PolC DNA polymerase II 48.6 13 0.00029 45.1 2.9 41 275-327 910-952 (1444)
393 PF01347 Vitellogenin_N: Lipop 48.6 3.8E+02 0.0082 31.1 15.1 132 421-570 433-585 (618)
394 PF12906 RINGv: RING-variant d 48.5 12 0.00025 27.5 1.6 29 292-320 13-47 (47)
395 smart00638 LPD_N Lipoprotein N 48.2 4E+02 0.0086 30.7 15.0 205 421-655 313-540 (574)
396 PRK10869 recombination and rep 47.8 4.9E+02 0.011 29.9 17.1 76 52-133 177-255 (553)
397 cd00350 rubredoxin_like Rubred 47.5 13 0.00029 24.9 1.6 11 313-323 16-26 (33)
398 PF08167 RIX1: rRNA processing 45.8 96 0.0021 29.3 7.9 71 375-447 23-96 (165)
399 PLN02436 cellulose synthase A 45.1 14 0.0003 44.8 2.3 46 280-325 37-89 (1094)
400 PRK06266 transcription initiat 44.8 23 0.0005 34.1 3.4 55 277-347 115-170 (178)
401 PLN02189 cellulose synthase 44.5 15 0.00032 44.4 2.5 46 280-325 35-87 (1040)
402 PF10521 DUF2454: Protein of u 44.4 1.7E+02 0.0038 30.3 10.2 71 503-573 119-202 (282)
403 KOG0314 Predicted E3 ubiquitin 44.1 11 0.00024 41.2 1.3 66 274-341 214-283 (448)
404 PLN02195 cellulose synthase A 44.1 17 0.00037 43.7 2.8 45 281-325 8-59 (977)
405 PRK04023 DNA polymerase II lar 44.1 19 0.00041 43.2 3.2 46 278-326 625-675 (1121)
406 KOG1815 Predicted E3 ubiquitin 43.5 20 0.00043 40.0 3.2 36 277-312 68-104 (444)
407 PF08216 CTNNBL: Catenin-beta- 43.2 19 0.00041 31.5 2.3 42 395-437 64-105 (108)
408 PF01726 LexA_DNA_bind: LexA D 43.0 75 0.0016 25.0 5.5 45 171-220 8-52 (65)
409 PF01347 Vitellogenin_N: Lipop 42.9 3.2E+02 0.0069 31.7 13.3 205 421-653 349-582 (618)
410 KOG0396 Uncharacterized conser 42.4 20 0.00044 37.9 2.8 48 279-326 330-380 (389)
411 PRK06424 transcription factor; 41.7 1.1E+02 0.0025 28.3 7.3 63 144-206 73-139 (144)
412 PLN02638 cellulose synthase A 41.1 17 0.00038 44.0 2.3 46 280-325 18-70 (1079)
413 TIGR00373 conserved hypothetic 40.3 21 0.00045 33.7 2.3 35 277-327 107-141 (158)
414 KOG4231 Intracellular membrane 40.3 23 0.0005 39.0 2.9 178 478-661 222-400 (763)
415 KOG4445 Uncharacterized conser 40.2 15 0.00033 37.6 1.4 48 279-326 115-187 (368)
416 PF04641 Rtf2: Rtf2 RING-finge 40.2 35 0.00076 35.0 4.2 37 277-313 32-69 (260)
417 PRK11088 rrmA 23S rRNA methylt 40.2 15 0.00033 37.8 1.6 25 279-303 2-29 (272)
418 KOG3579 Predicted E3 ubiquitin 39.6 17 0.00036 36.9 1.6 45 275-319 264-316 (352)
419 PF11864 DUF3384: Domain of un 39.6 5.8E+02 0.013 28.5 19.2 109 391-513 4-117 (464)
420 KOG2137 Protein kinase [Signal 39.5 2.2E+02 0.0048 33.2 10.6 131 378-516 390-521 (700)
421 PF12252 SidE: Dot/Icm substra 39.3 5.6E+02 0.012 31.5 13.8 144 91-245 1014-1170(1439)
422 cd00730 rubredoxin Rubredoxin; 39.2 15 0.00032 27.4 0.9 13 275-287 30-42 (50)
423 KOG2933 Uncharacterized conser 38.4 2E+02 0.0043 30.2 9.1 135 505-654 90-228 (334)
424 KOG1020 Sister chromatid cohes 37.9 4.6E+02 0.0099 33.6 13.2 128 477-619 793-924 (1692)
425 KOG1952 Transcription factor N 37.7 25 0.00054 41.2 2.8 46 278-323 190-245 (950)
426 PF13251 DUF4042: Domain of un 37.6 2.6E+02 0.0056 27.0 9.4 116 544-661 39-175 (182)
427 PF01417 ENTH: ENTH domain; I 37.3 2E+02 0.0043 25.6 8.2 97 560-661 18-122 (125)
428 PF13251 DUF4042: Domain of un 37.3 3.7E+02 0.008 25.9 10.4 110 504-617 40-175 (182)
429 smart00531 TFIIE Transcription 36.7 18 0.00039 33.6 1.3 38 277-326 97-135 (147)
430 PF04388 Hamartin: Hamartin pr 36.4 3.5E+02 0.0076 31.9 12.0 134 419-573 4-139 (668)
431 KOG0309 Conserved WD40 repeat- 36.1 22 0.00047 41.0 2.0 43 278-321 1027-1072(1081)
432 COG5098 Chromosome condensatio 35.9 1.2E+02 0.0026 35.1 7.6 140 420-574 893-1037(1128)
433 PF06906 DUF1272: Protein of u 35.6 35 0.00076 25.9 2.4 26 299-327 29-54 (57)
434 PF00301 Rubredoxin: Rubredoxi 35.5 16 0.00035 26.8 0.6 13 275-287 30-42 (47)
435 COG3492 Uncharacterized protei 34.4 23 0.00049 29.5 1.3 13 300-312 42-54 (104)
436 PF06416 DUF1076: Protein of u 34.1 31 0.00067 30.0 2.2 51 276-327 37-93 (113)
437 COG1592 Rubrerythrin [Energy p 34.1 27 0.00058 33.1 2.0 25 279-323 134-158 (166)
438 PLN02915 cellulose synthase A 33.8 27 0.00059 42.3 2.4 47 279-325 15-68 (1044)
439 PF06957 COPI_C: Coatomer (COP 32.9 6.4E+02 0.014 27.9 12.5 53 81-151 195-247 (422)
440 PF09538 FYDLN_acid: Protein o 32.9 32 0.00069 30.2 2.1 14 314-327 26-39 (108)
441 cd08329 CARD_BIRC2_BIRC3 Caspa 32.8 1.1E+02 0.0024 26.1 5.3 60 50-110 10-69 (94)
442 KOG1566 Conserved protein Mo25 32.7 6.2E+02 0.013 26.7 15.3 197 454-654 73-280 (342)
443 cd08324 CARD_NOD1_CARD4 Caspas 31.8 2.8E+02 0.006 23.1 7.1 71 51-134 3-76 (85)
444 cd00197 VHS_ENTH_ANTH VHS, ENT 31.6 2.8E+02 0.0062 24.1 8.2 70 377-446 37-113 (115)
445 KOG2005 26S proteasome regulat 31.3 9.1E+02 0.02 28.3 14.1 193 418-613 47-293 (878)
446 COG5098 Chromosome condensatio 31.0 2.5E+02 0.0055 32.7 9.1 105 505-616 301-415 (1128)
447 KOG2462 C2H2-type Zn-finger pr 31.0 29 0.00062 35.4 1.7 49 275-327 157-228 (279)
448 PF10521 DUF2454: Protein of u 31.0 2.9E+02 0.0062 28.6 9.3 72 376-447 118-202 (282)
449 PF14357 DUF4404: Domain of un 30.8 2.7E+02 0.006 23.2 7.3 73 126-202 4-79 (85)
450 KOG2169 Zn-finger transcriptio 30.7 39 0.00084 39.5 3.0 67 275-343 302-374 (636)
451 PF04821 TIMELESS: Timeless pr 30.4 6.1E+02 0.013 26.0 15.1 105 412-535 33-152 (266)
452 KOG2932 E3 ubiquitin ligase in 30.3 21 0.00047 36.6 0.7 42 279-323 90-132 (389)
453 PF05597 Phasin: Poly(hydroxya 30.3 3.5E+02 0.0075 24.7 8.4 30 194-223 94-126 (132)
454 COG2888 Predicted Zn-ribbon RN 29.5 32 0.00069 26.4 1.3 33 278-322 26-58 (61)
455 PF07923 N1221: N1221-like pro 29.5 1.2E+02 0.0026 31.7 6.2 55 375-429 58-126 (293)
456 PLN03086 PRLI-interacting fact 29.5 60 0.0013 37.1 4.1 50 275-324 449-514 (567)
457 PF13240 zinc_ribbon_2: zinc-r 28.5 39 0.00084 20.7 1.4 7 316-322 15-21 (23)
458 COG1327 Predicted transcriptio 28.3 4.9E+02 0.011 24.2 9.8 87 125-221 64-150 (156)
459 COG5656 SXM1 Importin, protein 28.2 3.4E+02 0.0074 32.0 9.5 122 418-543 407-539 (970)
460 PF08580 KAR9: Yeast cortical 28.2 6.6E+02 0.014 29.8 12.4 73 56-135 4-80 (683)
461 PLN02400 cellulose synthase 28.0 28 0.0006 42.4 1.2 46 280-325 37-89 (1085)
462 PF09889 DUF2116: Uncharacteri 27.6 80 0.0017 24.4 3.2 14 313-326 2-15 (59)
463 PF07800 DUF1644: Protein of u 27.5 30 0.00066 32.2 1.1 20 278-297 1-20 (162)
464 KOG4713 Cyclin-dependent kinas 27.4 74 0.0016 30.0 3.6 45 61-105 136-180 (189)
465 KOG2152 Sister chromatid cohes 27.4 1.1E+03 0.024 28.0 13.9 257 378-642 333-634 (865)
466 PRK14714 DNA polymerase II lar 27.0 56 0.0012 40.5 3.4 48 279-326 667-721 (1337)
467 PF10274 ParcG: Parkin co-regu 26.9 5.3E+02 0.012 24.9 9.5 72 502-575 37-110 (183)
468 PF10235 Cript: Microtubule-as 26.2 40 0.00086 28.4 1.5 38 279-326 44-81 (90)
469 COG4530 Uncharacterized protei 26.2 64 0.0014 28.0 2.7 30 276-305 6-40 (129)
470 COG5242 TFB4 RNA polymerase II 26.2 32 0.00069 33.8 1.0 16 278-293 259-274 (296)
471 PF01603 B56: Protein phosphat 26.1 4.7E+02 0.01 28.7 10.4 74 416-489 130-203 (409)
472 KOG2272 Focal adhesion protein 26.1 36 0.00078 34.0 1.4 50 275-324 179-231 (332)
473 cd08050 TAF6 TATA Binding Prot 26.0 2.7E+02 0.0059 29.8 8.2 104 377-490 178-297 (343)
474 cd03572 ENTH_epsin_related ENT 25.8 3E+02 0.0065 24.7 7.1 70 545-615 39-118 (122)
475 PF12397 U3snoRNP10: U3 small 25.0 4.7E+02 0.01 22.9 10.2 89 545-639 7-103 (121)
476 cd08330 CARD_ASC_NALP1 Caspase 24.8 3.7E+02 0.0081 22.1 7.1 57 51-108 3-59 (82)
477 TIGR01206 lysW lysine biosynth 24.7 38 0.00083 25.6 1.0 32 279-325 2-33 (54)
478 smart00638 LPD_N Lipoprotein N 24.7 1.1E+03 0.024 27.0 15.8 132 421-570 395-541 (574)
479 PF13811 DUF4186: Domain of un 24.6 38 0.00083 29.5 1.1 21 291-312 64-87 (111)
480 KOG1992 Nuclear export recepto 24.6 3.7E+02 0.0079 32.1 9.1 174 421-597 500-706 (960)
481 PF12231 Rif1_N: Rap1-interact 24.5 9.1E+02 0.02 26.0 12.3 176 428-614 2-202 (372)
482 TIGR00270 conserved hypothetic 24.4 2.7E+02 0.0059 26.0 6.9 60 148-207 62-125 (154)
483 PF10571 UPF0547: Uncharacteri 24.4 43 0.00092 21.2 1.0 9 281-289 2-10 (26)
484 cd08325 CARD_CASP1-like Caspas 24.4 2.3E+02 0.0051 23.4 5.8 59 51-110 2-63 (83)
485 PF15616 TerY-C: TerY-C metal 24.4 31 0.00068 31.3 0.6 44 275-325 73-116 (131)
486 cd03565 VHS_Tom1 VHS domain fa 24.3 4.8E+02 0.01 23.9 8.5 72 377-448 38-115 (141)
487 PF04216 FdhE: Protein involve 24.2 11 0.00024 39.4 -2.7 44 279-323 172-220 (290)
488 cd00729 rubredoxin_SM Rubredox 24.2 35 0.00076 23.1 0.7 10 314-323 18-27 (34)
489 cd00197 VHS_ENTH_ANTH VHS, ENT 24.2 3.5E+02 0.0076 23.5 7.4 69 588-658 39-113 (115)
490 PF00619 CARD: Caspase recruit 24.1 3.4E+02 0.0074 21.9 6.9 65 50-115 3-67 (85)
491 PF06012 DUF908: Domain of Unk 24.1 2.5E+02 0.0054 29.9 7.5 77 476-552 237-324 (329)
492 cd03565 VHS_Tom1 VHS domain fa 23.7 4.2E+02 0.009 24.3 8.0 73 588-661 40-116 (141)
493 COG4068 Uncharacterized protei 23.1 83 0.0018 24.1 2.5 20 313-332 7-26 (64)
494 TIGR01562 FdhE formate dehydro 22.8 21 0.00046 37.4 -0.9 44 279-323 184-233 (305)
495 PF12231 Rif1_N: Rap1-interact 22.5 9.9E+02 0.021 25.8 15.4 135 432-573 59-203 (372)
496 KOG1428 Inhibitor of type V ad 22.5 50 0.0011 41.1 1.9 50 278-327 3485-3546(3738)
497 PRK11595 DNA utilization prote 22.4 58 0.0013 32.6 2.2 39 281-325 7-45 (227)
498 TIGR02300 FYDLN_acid conserved 22.3 59 0.0013 29.2 1.9 14 277-290 7-20 (129)
499 KOG0972 Huntingtin interacting 22.0 6.1E+02 0.013 26.3 9.1 141 83-245 200-348 (384)
500 KOG0994 Extracellular matrix g 22.0 6.9E+02 0.015 31.1 10.7 90 120-211 1420-1513(1758)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=6.2e-28 Score=292.42 Aligned_cols=283 Identities=23% Similarity=0.217 Sum_probs=251.9
Q ss_pred HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcCchhhHHHHh-cCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCc
Q 037121 375 MKLMSRFLARRLFFG--TNEEKNKAAYEIRLLAKSNIFNRSCIVE-SGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTS 451 (683)
Q Consensus 375 ~~~~i~~Lv~~L~s~--~~~~~~~a~~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~ 451 (683)
....+.+|++.|+++ +++.|..|+..|+.+++.+++||..+++ .|+||.|+.+|++++..+|++|+.+|.||+.+++
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~ 90 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED 90 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence 355789999999977 7899999999999999999999999997 7999999999999999999999999999999999
Q ss_pred hhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC---chhHHHhhccCCChHHHHHhhhcCCH---HHHHHHHH
Q 037121 452 GKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSV---KGYRKLIGETPKAIPALVKLIEEGTD---CGKKNAVV 525 (683)
Q Consensus 452 ~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~---~~~~~~i~~~~g~i~~Lv~lL~~~~~---~~~~~A~~ 525 (683)
+|..|+..|++++|+.+|++| +.+++++|+++|++|+.+ ++++..|+...|+||.|+.++++++. .++..|+.
T Consensus 91 nk~~Iv~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~ 169 (2102)
T PLN03200 91 LRVKVLLGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTG 169 (2102)
T ss_pred HHHHHHHcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHH
Confidence 999999999999999999999 999999999999999987 45666776669999999999998752 35567889
Q ss_pred HHHHcccCCchhh-hHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHH
Q 037121 526 AIFGLLLSQGNHQ-KVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAG 603 (683)
Q Consensus 526 aL~nLs~~~~n~~-~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ 603 (683)
+|+|||.+++++. .++++|+|+.|+.+| .++++.++..|+.+|.+++. .++++..+.+.|+||.|+++|+++.++..
T Consensus 170 AL~nLs~~~en~~~~IIeaGaVp~LV~LL-sS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~V 248 (2102)
T PLN03200 170 ALRNLCGSTDGFWSATLEAGGVDILVKLL-SSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSV 248 (2102)
T ss_pred HHHHHhcCccchHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHH
Confidence 9999999999985 458999999999999 67889999999999998885 47899999999999999999987645689
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCC---------HHHHHHHHHHHHHHHHh
Q 037121 604 KEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGT---------SQARKKARSLIKILHKF 661 (683)
Q Consensus 604 ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~---------~~~k~~A~~lL~~l~~~ 661 (683)
|++|+++|.+||.++ .+..+.+.+ .|++|.|+.++...+ ...++.|.|+|.++.+.
T Consensus 249 RE~AA~AL~nLAs~s-~e~r~~Iv~-aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 249 RAEAAGALEALSSQS-KEAKQAIAD-AGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHH-CCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 999999999999986 455666766 899999999998544 34589999999998763
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.9e-27 Score=253.25 Aligned_cols=281 Identities=24% Similarity=0.302 Sum_probs=249.5
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch-hh
Q 037121 377 LMSRFLARRLFFG-TNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KK 454 (683)
Q Consensus 377 ~~i~~Lv~~L~s~-~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~-r~ 454 (683)
+.++.+|..|..+ ++..|.+|+|+|.++|.++.+....++++|++|.|+.+|.+++..++++|+++|+|++.++.. |.
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 4788999999755 589999999999999999999999999999999999999999999999999999999999877 88
Q ss_pred HHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCC
Q 037121 455 VIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ 534 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 534 (683)
.++..|++++|+.++..........+++|+|.|||.+......+.....++|.|..++.+.|..+..+|+|||.+|+.++
T Consensus 189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ 268 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS 268 (514)
T ss_pred HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 88899999999999998755578999999999999987655554444679999999999999999999999999999765
Q ss_pred c-hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHH
Q 037121 535 G-NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILL 612 (683)
Q Consensus 535 ~-n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~ 612 (683)
. ....+++.|+++.|+++| .+.+..++..|+..++|++. ++..++.++..|+++.|..++........|..|++++.
T Consensus 269 ne~iq~vi~~gvv~~LV~lL-~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iS 347 (514)
T KOG0166|consen 269 NEKIQMVIDAGVVPRLVDLL-GHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTIS 347 (514)
T ss_pred hHHHHHHHHccchHHHHHHH-cCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHH
Confidence 5 467789999999999999 77888899999999999974 77888999999999999999985425557888999999
Q ss_pred HHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHH
Q 037121 613 SLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHK 660 (683)
Q Consensus 613 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 660 (683)
|++.++.++. +.++. +|++|.|+.++++++-++|++|+|++.++..
T Consensus 348 NItAG~~~qi-qaVid-a~l~p~Li~~l~~~ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 348 NITAGNQEQI-QAVID-ANLIPVLINLLQTAEFDIRKEAAWAISNLTS 393 (514)
T ss_pred HhhcCCHHHH-HHHHH-cccHHHHHHHHhccchHHHHHHHHHHHhhcc
Confidence 9999876555 44554 8999999999999999999999999998753
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.95 E-value=6.3e-26 Score=275.11 Aligned_cols=280 Identities=21% Similarity=0.273 Sum_probs=245.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhH
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKV 455 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~ 455 (683)
.+.++.|+++|.+++.+.|..|++.|++++..+++++..+.++|+||+|+++|.+++..+|++|+++|+||+.++++...
T Consensus 445 ~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~ 524 (2102)
T PLN03200 445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA 524 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence 44789999999999999999999999999999999999999999999999999999999999999999999998877555
Q ss_pred Hh-hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchh-------------------------------------HHH
Q 037121 456 IV-ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGY-------------------------------------RKL 497 (683)
Q Consensus 456 i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~-------------------------------------~~~ 497 (683)
++ +.|++++|+++|+++ +.+.+++|+++|++|+...++ ...
T Consensus 525 iV~~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~ 603 (2102)
T PLN03200 525 CVESAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVRE 603 (2102)
T ss_pred HHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHH
Confidence 44 889999999999999 899999999999999642211 011
Q ss_pred hhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCc-hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC--
Q 037121 498 IGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQG-NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-- 574 (683)
Q Consensus 498 i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-- 574 (683)
.....|+++.|+++++++++.+++.|+++|.|++.+.. ++..++..|+|++|+.+| .+.+.+++..|+++|.||+.
T Consensus 604 g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LL-ss~~~~v~keAA~AL~nL~~~~ 682 (2102)
T PLN03200 604 GSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLL-TNNTEAVATQSARALAALSRSI 682 (2102)
T ss_pred hhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHH-hcCChHHHHHHHHHHHHHHhCC
Confidence 11236899999999999999999999999999998554 578899999999999999 77788899999999999984
Q ss_pred ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHH
Q 037121 575 DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSL 654 (683)
Q Consensus 575 ~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~l 654 (683)
.++.+..+.+.|+++.|+++|... +...++.|+.+|.+++..+ + ....+.. .|+++.|+.++++|+++.|+.|+++
T Consensus 683 ~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALanLl~~~-e-~~~ei~~-~~~I~~Lv~lLr~G~~~~k~~Aa~A 758 (2102)
T PLN03200 683 KENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALANLLSDP-E-VAAEALA-EDIILPLTRVLREGTLEGKRNAARA 758 (2102)
T ss_pred CHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHHHHHcCc-h-HHHHHHh-cCcHHHHHHHHHhCChHHHHHHHHH
Confidence 556677889999999999999988 8999999999999999986 3 3344444 6789999999999999999999998
Q ss_pred HHHHHHh
Q 037121 655 IKILHKF 661 (683)
Q Consensus 655 L~~l~~~ 661 (683)
|..|.+.
T Consensus 759 L~~L~~~ 765 (2102)
T PLN03200 759 LAQLLKH 765 (2102)
T ss_pred HHHHHhC
Confidence 8766654
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.94 E-value=4.1e-26 Score=226.69 Aligned_cols=279 Identities=22% Similarity=0.238 Sum_probs=242.5
Q ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch-hhH
Q 037121 378 MSRFLARRLFF-GTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KKV 455 (683)
Q Consensus 378 ~i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~-r~~ 455 (683)
.++.+|+++.+ ...-.|.+|+|.|.+++.........++++|++|.++++|.+++.+++++|+|+|+|++.++.. |..
T Consensus 115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~ 194 (526)
T COG5064 115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDY 194 (526)
T ss_pred ccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHH
Confidence 67888999954 4455789999999999998888888889999999999999999999999999999999999887 888
Q ss_pred HhhcCcHHHHHHHHcCCC-CHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCC
Q 037121 456 IVESGGLKVILKVLKSGL-SLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ 534 (683)
Q Consensus 456 i~~~g~i~~Lv~lL~~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 534 (683)
+++.|++++++.+|.+.. .....+++.|+|.|||..............++|.|.+++.+.++++.-+|+||+.+|+..+
T Consensus 195 vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~ 274 (526)
T COG5064 195 VLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGP 274 (526)
T ss_pred HHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCc
Confidence 889999999999998752 3578899999999999976543333333458999999999999999999999999999877
Q ss_pred ch-hhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHH
Q 037121 535 GN-HQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILL 612 (683)
Q Consensus 535 ~n-~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~ 612 (683)
.. ...+++.|+.+.|+++| ++++..++..|+..++|+.. ++...+.++..|+++.+..+|.+. ....+..|++.+.
T Consensus 275 ~E~i~avld~g~~~RLvElL-s~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiS 352 (526)
T COG5064 275 NEKIQAVLDVGIPGRLVELL-SHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTIS 352 (526)
T ss_pred HHHHHHHHhcCCcHHHHHHh-cCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeec
Confidence 65 47778999999999999 88899999999999999975 667788999999999999999887 5678888888999
Q ss_pred HHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHH
Q 037121 613 SLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHK 660 (683)
Q Consensus 613 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 660 (683)
|++.++.++ .+.+++ .+++|+|+.++...+..+|+.|+|++.+...
T Consensus 353 NITAGnteq-iqavid-~nliPpLi~lls~ae~k~kKEACWAisNats 398 (526)
T COG5064 353 NITAGNTEQ-IQAVID-ANLIPPLIHLLSSAEYKIKKEACWAISNATS 398 (526)
T ss_pred ccccCCHHH-HHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999988555 455555 8899999999999999999999999988654
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.4e-24 Score=217.47 Aligned_cols=277 Identities=27% Similarity=0.356 Sum_probs=251.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhh
Q 037121 379 SRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVE 458 (683)
Q Consensus 379 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~ 458 (683)
+..|+..+.+...+.|+.+++.|.+|+.. +.+|..++..|++.+|.++-++.|..+|.+|..+|.|+....+||..++.
T Consensus 128 l~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~ 206 (550)
T KOG4224|consen 128 LDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVH 206 (550)
T ss_pred hHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 45566666677778999999999999985 78999999999999999988999999999999999999999999999999
Q ss_pred cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCC--ChHHHHHhhhcCCHHHHHHHHHHHHHcccCCch
Q 037121 459 SGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPK--AIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGN 536 (683)
Q Consensus 459 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g--~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 536 (683)
+|+++.||++++++ +..++..+..++.+++.+..+++.+.+ .+ .+|.||+++.+++++++-.|..||.||+.+.+.
T Consensus 207 aG~lpvLVsll~s~-d~dvqyycttaisnIaVd~~~Rk~Laq-aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y 284 (550)
T KOG4224|consen 207 AGGLPVLVSLLKSG-DLDVQYYCTTAISNIAVDRRARKILAQ-AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY 284 (550)
T ss_pred cCCchhhhhhhccC-ChhHHHHHHHHhhhhhhhHHHHHHHHh-cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh
Confidence 99999999999999 999999999999999999888888877 66 999999999999999999999999999999999
Q ss_pred hhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 037121 537 HQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCS 616 (683)
Q Consensus 537 ~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~ 616 (683)
...++++|.+|.++++| .++.....-..+.++.|++-.|-+-..|.++|.+..|+.+|+.+.+.+.|-+|+.+|++|+.
T Consensus 285 q~eiv~ag~lP~lv~Ll-qs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 285 QREIVEAGSLPLLVELL-QSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hhHHHhcCCchHHHHHH-hCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 99999999999999999 66666677788999999999988889999999999999999999777799999999999998
Q ss_pred CChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHh
Q 037121 617 NAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 617 ~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 661 (683)
.. +.-+..+.+ .|.+|.|.+|+.+|.-..+.+....+..|.=.
T Consensus 364 ss-e~n~~~i~e-sgAi~kl~eL~lD~pvsvqseisac~a~Lal~ 406 (550)
T KOG4224|consen 364 SS-EHNVSVIRE-SGAIPKLIELLLDGPVSVQSEISACIAQLALN 406 (550)
T ss_pred hh-hhhhHHHhh-cCchHHHHHHHhcCChhHHHHHHHHHHHHHhc
Confidence 65 444566665 99999999999999999998877777766543
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.4e-24 Score=215.92 Aligned_cols=277 Identities=21% Similarity=0.238 Sum_probs=248.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIV 457 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~ 457 (683)
.+.+|...-++.+..+|+.+...|-++.. ..+||..++.+|++|.|+.+++++|.++|..+.+++.|++-+..+|..++
T Consensus 168 aL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~La 246 (550)
T KOG4224|consen 168 ALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILA 246 (550)
T ss_pred chhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 34556564455677899999999999986 67999999999999999999999999999999999999999999999999
Q ss_pred hcC--cHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCc
Q 037121 458 ESG--GLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQG 535 (683)
Q Consensus 458 ~~g--~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 535 (683)
+.| .++.|+.+++++ +..++-.|.-+|.+|+.+.++...|.+ .|.+|.+|++|+++.-......+.++.|++.++.
T Consensus 247 qaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~Yq~eiv~-ag~lP~lv~Llqs~~~plilasVaCIrnisihpl 324 (550)
T KOG4224|consen 247 QAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTEYQREIVE-AGSLPLLVELLQSPMGPLILASVACIRNISIHPL 324 (550)
T ss_pred hcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccchhhhHHHh-cCCchHHHHHHhCcchhHHHHHHHHHhhcccccC
Confidence 887 999999999999 899999999999999999999999999 9999999999998877788888899999999999
Q ss_pred hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHH
Q 037121 536 NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSL 614 (683)
Q Consensus 536 n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L 614 (683)
|-..++++|++.+||.+|.-..+.+++..|..+|+||+. ++.++..|.+.|+|+.+.+++..+ +-..++.-.+++..|
T Consensus 325 Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~L 403 (550)
T KOG4224|consen 325 NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQL 403 (550)
T ss_pred cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHH
Confidence 999999999999999999555677799999999999986 788999999999999999999888 777888888888888
Q ss_pred hcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHh
Q 037121 615 CSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 615 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 661 (683)
+.+.. -...+.. .|++|.|+.++.+.+.+++..|+++|-+|+..
T Consensus 404 al~d~--~k~~lld-~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 404 ALNDN--DKEALLD-SGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred Hhccc--cHHHHhh-cCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 87743 3355555 89999999999999999999998888888754
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=8.4e-22 Score=211.41 Aligned_cols=285 Identities=21% Similarity=0.257 Sum_probs=253.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCH-HHHHHHHHHHHhhccCCchhhHH
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQ-CVQENAVAALLKLSKHTSGKKVI 456 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~-~~q~~A~~aL~nLs~~~~~r~~i 456 (683)
.++.++..|.+++.+++.+|+|+|.+++.+++..|..+.+.|++++|+.++...+. ....++.|+|.||+.+..-.-.+
T Consensus 153 avp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~ 232 (514)
T KOG0166|consen 153 AVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPF 232 (514)
T ss_pred chHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcH
Confidence 57789999999999999999999999999999999999999999999999988765 78899999999999876432222
Q ss_pred -hhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCc
Q 037121 457 -VESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQG 535 (683)
Q Consensus 457 -~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 535 (683)
.-..+++.|..++.+. +.++...|+|++.+|+.+...+..++-..|++|.|+++|.+.+..++..|+.++.|+....+
T Consensus 233 ~~v~~iLp~L~~ll~~~-D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d 311 (514)
T KOG0166|consen 233 DVVAPILPALLRLLHST-DEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSD 311 (514)
T ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccH
Confidence 2356799999999998 99999999999999998887777777779999999999999999999999999999999888
Q ss_pred hh-hhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhh-CChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHH
Q 037121 536 NH-QKVLDAGTVPLLADILASSNRTELITDSLAVLANLA-EDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLS 613 (683)
Q Consensus 536 n~-~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~ 613 (683)
.. ..++..|+++.|..+|..++...++.+|++++.|++ ++.+..++++++|.+|.|+.+|+++ .-+.|..|++++.|
T Consensus 312 ~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN 390 (514)
T KOG0166|consen 312 EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISN 390 (514)
T ss_pred HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHh
Confidence 75 667899999999999954667779999999999996 5788999999999999999999998 78888888999999
Q ss_pred HhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhhhhc
Q 037121 614 LCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFIETC 665 (683)
Q Consensus 614 L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~~~ 665 (683)
+|.++..+...-|++ .|++++|..++.-.+.++-..+...+.++-+..+..
T Consensus 391 ~ts~g~~~qi~yLv~-~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~ 441 (514)
T KOG0166|consen 391 LTSSGTPEQIKYLVE-QGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAE 441 (514)
T ss_pred hcccCCHHHHHHHHH-cCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHh
Confidence 999988888888888 999999999997778888788888998888776544
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.83 E-value=2.1e-19 Score=179.10 Aligned_cols=276 Identities=16% Similarity=0.196 Sum_probs=238.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCC--HHHHHHHHHHHHhhccCCc---h
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPD--QCVQENAVAALLKLSKHTS---G 452 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d--~~~q~~A~~aL~nLs~~~~---~ 452 (683)
.++.+++.|.+++.+++.+++|+|.+++-+++..|..+.+.|++.+++.+|.++. ..+..++.|+|.||+.... +
T Consensus 158 AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~ 237 (526)
T COG5064 158 AVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPD 237 (526)
T ss_pred chHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCc
Confidence 6789999999999999999999999999999999999999999999999998754 5788999999999995432 2
Q ss_pred hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHccc
Q 037121 453 KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLL 532 (683)
Q Consensus 453 r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 532 (683)
-..|- -+++.|.+++.+. +.++...|+|++.+|+.....+..+.-..|..+.||++|.+++..++..|+..+.|+..
T Consensus 238 w~~is--qalpiL~KLiys~-D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVT 314 (526)
T COG5064 238 WSNIS--QALPILAKLIYSR-DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVT 314 (526)
T ss_pred hHHHH--HHHHHHHHHHhhc-CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeee
Confidence 33332 3589999999988 89999999999999999887777776668999999999999999999999999999999
Q ss_pred CCchh-hhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhh-CChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHH
Q 037121 533 SQGNH-QKVLDAGTVPLLADILASSNRTELITDSLAVLANLA-EDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSI 610 (683)
Q Consensus 533 ~~~n~-~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~ 610 (683)
..+.. ..++..|+++.+..+| +++...++.+|++.+.|+. ++.+..+++++++.+|.|+.+|... .-..|..|+++
T Consensus 315 G~D~QTqviI~~G~L~a~~~lL-s~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWA 392 (526)
T COG5064 315 GSDDQTQVIINCGALKAFRSLL-SSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWA 392 (526)
T ss_pred cCccceehheecccHHHHHHHh-cChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHH
Confidence 88765 5678899999999999 8888899999999999995 6888999999999999999999887 66777778888
Q ss_pred HHHHhcCCh--HHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHH
Q 037121 611 LLSLCSNAR--EEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILH 659 (683)
Q Consensus 611 L~~L~~~~~--~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~ 659 (683)
+.|.++++. .+..+-++. .|++.+|..++.-.+-++-+-|...++++-
T Consensus 393 isNatsgg~~~PD~iryLv~-qG~IkpLc~~L~~~dNkiiev~LD~~eniL 442 (526)
T COG5064 393 ISNATSGGLNRPDIIRYLVS-QGFIKPLCDLLDVVDNKIIEVALDAIENIL 442 (526)
T ss_pred HHhhhccccCCchHHHHHHH-ccchhHHHHHHhccCccchhhhHHHHHHHH
Confidence 889888752 456777777 899999999998777777777777666543
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.79 E-value=3.4e-17 Score=185.47 Aligned_cols=278 Identities=22% Similarity=0.232 Sum_probs=228.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhH
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKV 455 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~ 455 (683)
+..++.|++.|.+++.+....++..|+.|+- ..+|+..+.+.|+||.|++++.+++.+++..|+++|+|||.+++.|..
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 4578899999999999999999999999998 568999999999999999999999999999999999999999999999
Q ss_pred HhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhc-CCHHHHHHHHHHHHHcccCC
Q 037121 456 IVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEE-GTDCGKKNAVVAIFGLLLSQ 534 (683)
Q Consensus 456 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~ 534 (683)
|+..|++|.|+.+|.++ ..+..+..+|.+||.+++++..+.. .+++|.|++++-+ ++..+...++.++.||+.++
T Consensus 368 mV~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~ 443 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDP---NFREVALKILYNLSMDDEARSMFAY-TDCIPQLMQMLLENSEEEVQLELIALLINLALNK 443 (708)
T ss_pred HHHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHHHhh-cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH
Confidence 99999999999999876 3567799999999999999998887 8899999998765 45566778888999999999
Q ss_pred chhhhHhhcCcHHHHHHHH-------------------------------------ccCCChhHHHHHHHHHHHhhCChh
Q 037121 535 GNHQKVLDAGTVPLLADIL-------------------------------------ASSNRTELITDSLAVLANLAEDIQ 577 (683)
Q Consensus 535 ~n~~~iv~~g~v~~Lv~lL-------------------------------------~~~~~~~~~~~al~iL~nLa~~~~ 577 (683)
.|...+.+.|+++.|++.. ....++++.-+++++|+||...+.
T Consensus 444 rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~l 523 (708)
T PF05804_consen 444 RNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDL 523 (708)
T ss_pred HHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCc
Confidence 9988888877777665432 123467788899999999986555
Q ss_pred hHHHHHh-cCChHHHHHhhccCC-ChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcC--CHHHHHHHHH
Q 037121 578 GTSTILK-TSALPVIIGLLQTLT-SRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDG--TSQARKKARS 653 (683)
Q Consensus 578 ~~~~i~~-~g~i~~Lv~lL~~~~-s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g--~~~~k~~A~~ 653 (683)
....+++ .+.+|.|..+|..|. .+...-.++.++..+|.. +++...+.+ .|+++.|++++... ++...-....
T Consensus 524 d~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d--~~~A~lL~~-sgli~~Li~LL~~kqeDdE~VlQil~ 600 (708)
T PF05804_consen 524 DWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD--PECAPLLAK-SGLIPTLIELLNAKQEDDEIVLQILY 600 (708)
T ss_pred CHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC--HHHHHHHHh-CChHHHHHHHHHhhCchHHHHHHHHH
Confidence 6666664 577999999998763 345777778788888875 567777776 99999999999765 4555544444
Q ss_pred HHHHHHHh
Q 037121 654 LIKILHKF 661 (683)
Q Consensus 654 lL~~l~~~ 661 (683)
....|-.+
T Consensus 601 ~f~~ll~h 608 (708)
T PF05804_consen 601 VFYQLLFH 608 (708)
T ss_pred HHHHHHcC
Confidence 44443333
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.78 E-value=5.6e-17 Score=183.66 Aligned_cols=262 Identities=21% Similarity=0.234 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHc
Q 037121 391 NEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLK 470 (683)
Q Consensus 391 ~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~ 470 (683)
....+.+.+.|.+++. ++.+...+.+.|+++.|+.+|.+++.++...++++|.+||...+||..|.+.|+++.|++++.
T Consensus 263 eqLlrv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence 3455677888999998 678889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHH
Q 037121 471 SGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLA 550 (683)
Q Consensus 471 ~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv 550 (683)
++ +.+.+..+..+|+|||.+.+.+..+.. .|++|.|+.+|.+++ .+..++.+|++||.+++++..+...+++|.++
T Consensus 342 s~-~~~l~~~aLrlL~NLSfd~~~R~~mV~-~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~ 417 (708)
T PF05804_consen 342 SE-NEDLVNVALRLLFNLSFDPELRSQMVS-LGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLM 417 (708)
T ss_pred CC-CHHHHHHHHHHHHHhCcCHHHHHHHHH-CCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHH
Confidence 98 889999999999999999999999999 999999999998654 45679999999999999999999999999999
Q ss_pred HHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHH-------------------------------------
Q 037121 551 DILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIG------------------------------------- 593 (683)
Q Consensus 551 ~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~------------------------------------- 593 (683)
++|...++..+...+++++.||+.++.+.+.+.+.|+++.|++
T Consensus 418 ~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~ 497 (708)
T PF05804_consen 418 QMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAK 497 (708)
T ss_pred HHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 9986667777777889999999999888888888777776654
Q ss_pred hhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcC--CHHHHHHHHHHHHHHH
Q 037121 594 LLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDG--TSQARKKARSLIKILH 659 (683)
Q Consensus 594 lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g--~~~~k~~A~~lL~~l~ 659 (683)
++..+.++...-.|+++|.||...+ .++.+.+.+ .+++|.|..++..| .+.+.-.+.-++..+.
T Consensus 498 ~v~~~~~ee~~vE~LGiLaNL~~~~-ld~~~ll~~-~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla 563 (708)
T PF05804_consen 498 IVSSGDSEEFVVECLGILANLTIPD-LDWAQLLQE-YNLLPWLKDLLKPGASEDDLLLEVVILLGTLA 563 (708)
T ss_pred HhhcCCcHHHHHHHHHHHHhcccCC-cCHHHHHHh-CCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence 2222223445567888999998764 456666665 89999999999877 3344545555554444
No 11
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.77 E-value=3.1e-19 Score=145.34 Aligned_cols=72 Identities=43% Similarity=0.861 Sum_probs=63.5
Q ss_pred CCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHHHHHHHhcC
Q 037121 276 NPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLIHQFCADNG 347 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~ 347 (683)
+|++|.||||+++|.|||+++|||||||.||++|+..++.+||.|++++...+++||..|++.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 589999999999999999999999999999999999988999999999999999999999999999999875
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.68 E-value=8.4e-16 Score=170.19 Aligned_cols=286 Identities=19% Similarity=0.193 Sum_probs=227.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCC---ch
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHT---SG 452 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~---~~ 452 (683)
...++..+.+|.+.++..|-.|+..|..+++.+...+..+.+.|+|+.||.+|.+.+.++|.+|+++|.||.... +|
T Consensus 232 d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 232 DPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 346788899999999999999999999999999999999999999999999999999999999999999998543 47
Q ss_pred hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcC--------------CHH
Q 037121 453 KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEG--------------TDC 518 (683)
Q Consensus 453 r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~--------------~~~ 518 (683)
|..|.+.++|+.++.+|+...+.+++++.+.+|+||+++|..+..|.. .+++.|.+.+-.. +..
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~--~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT--SALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH--HHHHHHHHhhcccccccCCCCcccccccce
Confidence 999999999999999999855899999999999999999888877765 5777777654321 245
Q ss_pred HHHHHHHHHHHccc-CCchhhhHhhc-CcHHHHHHHHc-----cCCChhHHHHHHHHHHHhhCChh------hHHHH---
Q 037121 519 GKKNAVVAIFGLLL-SQGNHQKVLDA-GTVPLLADILA-----SSNRTELITDSLAVLANLAEDIQ------GTSTI--- 582 (683)
Q Consensus 519 ~~~~A~~aL~nLs~-~~~n~~~iv~~-g~v~~Lv~lL~-----~~~~~~~~~~al~iL~nLa~~~~------~~~~i--- 582 (683)
+..++..+|.|++. ..+.+.++.+. |.|..|+..+. ...+...++.|+.+|.||+..-+ .+..+
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 67789999999998 56678888766 89999999985 23467888999999999983211 01110
Q ss_pred ---------------------------------------------HhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcC
Q 037121 583 ---------------------------------------------LKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSN 617 (683)
Q Consensus 583 ---------------------------------------------~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~ 617 (683)
.....|..-..+|.....+.+.|+++++|-||+..
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 11011112122344333677999999999999987
Q ss_pred Ch---HHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhhh
Q 037121 618 AR---EEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFIE 663 (683)
Q Consensus 618 ~~---~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~ 663 (683)
.. ..+...+.....+.+.|++|+.++++.+.+.++.+|++|+....
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r 598 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR 598 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch
Confidence 63 33444442335679999999999999999999999999987653
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=3.1e-13 Score=135.47 Aligned_cols=268 Identities=17% Similarity=0.167 Sum_probs=215.0
Q ss_pred cCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC--CCHHHHHHHHHHHHhhc-cCCchhhHHhhcCcHH
Q 037121 387 FFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS--PDQCVQENAVAALLKLS-KHTSGKKVIVESGGLK 463 (683)
Q Consensus 387 ~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~q~~A~~aL~nLs-~~~~~r~~i~~~g~i~ 463 (683)
.+++.....+++..|..+....++ +.++-++..++.+|.. ++.++....+..+..-+ .++.||..+++.|+++
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 455666788899988888876554 5667778888998864 56777666676665544 6788999999999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhccCch----------hHHHhhccCCChHHHHHhhhcC-CHHHHHHHHHHHHHccc
Q 037121 464 VILKVLKSGLSLEARQIAAATLFYLTSVKG----------YRKLIGETPKAIPALVKLIEEG-TDCGKKNAVVAIFGLLL 532 (683)
Q Consensus 464 ~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~----------~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~ 532 (683)
.+...|.......+.+.+.|++..|..+++ +.+.|.. .|++..|++.++-+ ++.....++.+|..|+.
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~-e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAK-EGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHH-hhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 999888763244677888999999887664 4566666 67889999998764 57888899999999999
Q ss_pred CCchhhhHhhcCcHHHHHHHHccCCChh---HHHHHHHHHHHhhCChhhHHHHHhcCChHHHHH-hhccCCChHHHHHHH
Q 037121 533 SQGNHQKVLDAGTVPLLADILASSNRTE---LITDSLAVLANLAEDIQGTSTILKTSALPVIIG-LLQTLTSRAGKEYCV 608 (683)
Q Consensus 533 ~~~n~~~iv~~g~v~~Lv~lL~~~~~~~---~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~-lL~~~~s~~~ke~A~ 608 (683)
.++.|..+++.|++..|++++.++++.+ +...++..|..|++++..+..|++.||.+.++. ++++.++|-+.+.++
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 9999999999999999999995545444 557799999999999999999999999999999 556666888999999
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCC--HHHHHHHHHHHHHHHHh
Q 037121 609 SILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGT--SQARKKARSLIKILHKF 661 (683)
Q Consensus 609 ~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~--~~~k~~A~~lL~~l~~~ 661 (683)
.++.-||...++.....+ + .|+-...++-+.... ..+++.|+++++++-..
T Consensus 352 a~i~~l~LR~pdhsa~~i-e-~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r 404 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAI-E-AGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR 404 (461)
T ss_pred HHHHHHHhcCcchHHHHH-h-cchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 999999998876655544 4 777777777777653 44688999999988643
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=3.7e-13 Score=134.87 Aligned_cols=271 Identities=13% Similarity=0.159 Sum_probs=226.8
Q ss_pred cCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC-CCHHHHHHHHHHHHhhccCCchh----------hH
Q 037121 387 FFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS-PDQCVQENAVAALLKLSKHTSGK----------KV 455 (683)
Q Consensus 387 ~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~q~~A~~aL~nLs~~~~~r----------~~ 455 (683)
+..+.+.-...+..++.-|-.+..||..|++.|+.|.+.+.|.. +..++...+.+++.-|..+++.| ..
T Consensus 157 ~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ 236 (461)
T KOG4199|consen 157 KVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHART 236 (461)
T ss_pred ccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHH
Confidence 44566777888888888888899999999999999999976654 55568888899999998887753 45
Q ss_pred HhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcC-CH---HHHHHHHHHHHHcc
Q 037121 456 IVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEG-TD---CGKKNAVVAIFGLL 531 (683)
Q Consensus 456 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~---~~~~~A~~aL~nLs 531 (683)
|+..|++..|++.++.+.++.....+..+|..|+..++.+..|.. .|++..|+.++.+. .. ...+.++..|..|+
T Consensus 237 ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e-~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA 315 (461)
T KOG4199|consen 237 IAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAE-SGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA 315 (461)
T ss_pred HHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh
Confidence 678899999999999987888899999999999999999999999 99999999999873 33 35578999999999
Q ss_pred cCCchhhhHhhcCcHHHHHHHHcc-CCChhHHHHHHHHHHHhh-CChhhHHHHHhcCChHHHHHhhccCC-ChHHHHHHH
Q 037121 532 LSQGNHQKVLDAGTVPLLADILAS-SNRTELITDSLAVLANLA-EDIQGTSTILKTSALPVIIGLLQTLT-SRAGKEYCV 608 (683)
Q Consensus 532 ~~~~n~~~iv~~g~v~~Lv~lL~~-~~~~~~~~~al~iL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~-s~~~ke~A~ 608 (683)
.+++++..+|+.|+.+.++.++.. ..++.+...++.++..|| ..|+....++++|+-...++.|+..+ ....+.+|+
T Consensus 316 G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac 395 (461)
T KOG4199|consen 316 GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNAC 395 (461)
T ss_pred CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHH
Confidence 999999999999999999999754 468999999999999998 58999999999999888899787632 334889999
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHh
Q 037121 609 SILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 609 ~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 661 (683)
.++.|+..++.++ ...+. ..+++.|+......++.....|..+|+-|.-.
T Consensus 396 ~~IRNiv~rs~~~-~~~~l--~~GiE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 396 NMIRNIVVRSAEN-RTILL--ANGIEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred HHHHHHHHhhhhc-cchHH--hccHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 9999999987554 44444 34478888888888888888888889876543
No 15
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.57 E-value=2.8e-15 Score=118.99 Aligned_cols=63 Identities=49% Similarity=0.915 Sum_probs=60.2
Q ss_pred CccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHHHHH
Q 037121 279 DFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLIHQF 342 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~ 342 (683)
+|.||||+++|.|||+++|||+||+.||.+|+.. +.+||.|+++++..++.+|..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999988 78999999999989999999999999987
No 16
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.55 E-value=8.7e-14 Score=159.52 Aligned_cols=263 Identities=17% Similarity=0.176 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC------------CCHHHHHHHHHHHHhhccCCc-hhhHHh-hcC
Q 037121 395 NKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS------------PDQCVQENAVAALLKLSKHTS-GKKVIV-ESG 460 (683)
Q Consensus 395 ~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s------------~d~~~q~~A~~aL~nLs~~~~-~r~~i~-~~g 460 (683)
+.|+..|-.+++ +.++|..+-+.|++..+-+||.- .+..++..|..+|-||...+. ||..+- ..|
T Consensus 316 caA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg 394 (2195)
T KOG2122|consen 316 CAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG 394 (2195)
T ss_pred HHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence 377777778877 68999999999999998887742 135689999999999997665 466665 789
Q ss_pred cHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc-hhHHHhhccCCChHHHHHhh-hcCCHHHHHHHHHHHHHcccC-Cchh
Q 037121 461 GLKVILKVLKSGLSLEARQIAAATLFYLTSVK-GYRKLIGETPKAIPALVKLI-EEGTDCGKKNAVVAIFGLLLS-QGNH 537 (683)
Q Consensus 461 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~~-~~n~ 537 (683)
+++.+|..|.+. ..++.+..+.+|.||+... .+-+++.+..|-+..|+... ........+..+.|||||+.+ .+|+
T Consensus 395 fMeavVAQL~s~-peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNK 473 (2195)
T KOG2122|consen 395 FMEAVVAQLISA-PEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENK 473 (2195)
T ss_pred HHHHHHHHHhcC-hHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccc
Confidence 999999999998 8899999999999999854 46677777789999998854 445567899999999999975 5799
Q ss_pred hhHhhc-CcHHHHHHHHccC---CChhHHHHHHHHHHHhh----CChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHH
Q 037121 538 QKVLDA-GTVPLLADILASS---NRTELITDSLAVLANLA----EDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVS 609 (683)
Q Consensus 538 ~~iv~~-g~v~~Lv~lL~~~---~~~~~~~~al~iL~nLa----~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~ 609 (683)
..|..- |++..||.+|... ..-.+++.+-+||.|++ .++..|+.+.+.+.+..|++.|++. +-.+.-++++
T Consensus 474 A~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSNaCG 552 (2195)
T KOG2122|consen 474 AEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSNACG 552 (2195)
T ss_pred hhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeecchh
Confidence 999876 9999999999422 34678899999999986 4678899999999999999999987 8889999999
Q ss_pred HHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhh
Q 037121 610 ILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFI 662 (683)
Q Consensus 610 ~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 662 (683)
+||||...+.++ ++.|-. .|+++.|..|+++.+..+-+-++..|++|-.+.
T Consensus 553 TLWNLSAR~p~D-Qq~LwD-~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 553 TLWNLSARSPED-QQMLWD-DGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhcCCHHH-HHHHHh-cccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 999999988554 455544 899999999999999998888777777776655
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.54 E-value=9.1e-13 Score=133.39 Aligned_cols=191 Identities=23% Similarity=0.243 Sum_probs=169.1
Q ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHH
Q 037121 378 MSRFLARRLFF-GTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVI 456 (683)
Q Consensus 378 ~i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i 456 (683)
.++.|+..|.. .++.+|..|+..+.+.+. .+.++..+.+.|+++.+..+|.++++.+++.|+.+|.|++.+.+|+..|
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 46889999985 478999999999999876 6899999999999999999999999999999999999999999998876
Q ss_pred hhcCcHHHHHHHHcC-CCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCc
Q 037121 457 VESGGLKVILKVLKS-GLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQG 535 (683)
Q Consensus 457 ~~~g~i~~Lv~lL~~-~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 535 (683)
- ..++.+++.+.+ ..+.+.+..+..+|.+|+..+++...+.. .+|.|+.+|.+|+...+..++.+|.||+.++.
T Consensus 92 k--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~---~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~ 166 (254)
T PF04826_consen 92 K--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN---YIPDLLSLLSSGSEKTKVQVLKVLVNLSENPD 166 (254)
T ss_pred H--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh---hHHHHHHHHHcCChHHHHHHHHHHHHhccCHH
Confidence 3 257777775444 44678889999999999998888777643 79999999999999999999999999999999
Q ss_pred hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC
Q 037121 536 NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE 574 (683)
Q Consensus 536 n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~ 574 (683)
+...++.++++..++.++..+.+.++...++.++.|+..
T Consensus 167 ~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 167 MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 999999999999999999666678889999999999975
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.53 E-value=8.4e-13 Score=133.64 Aligned_cols=196 Identities=22% Similarity=0.281 Sum_probs=172.9
Q ss_pred HHhcCChHHHHhhcCC-CCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch
Q 037121 415 IVESGAIPPLLNLLSS-PDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKG 493 (683)
Q Consensus 415 i~~~G~i~~Lv~lL~s-~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~ 493 (683)
+.+.+-+..|+.+|.. .|+.+|+.|..+|+|.+..+.+++.|.+.|+++.+..+|.++ +..+++.|.++|.|++.+.+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChh
Confidence 3566778999999985 799999999999999999999999999999999999999999 89999999999999999999
Q ss_pred hHHHhhccCCChHHHHHhhhcC--CHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHH
Q 037121 494 YRKLIGETPKAIPALVKLIEEG--TDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLAN 571 (683)
Q Consensus 494 ~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~n 571 (683)
+...|-. .++.+++.+.+. +..++..++.+|.||+..++.+..+. +.++.++.+| ..++..++..++.+|.|
T Consensus 87 n~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL-~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 87 NQEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLL-SSGSEKTKVQVLKVLVN 160 (254)
T ss_pred hHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHH-HcCChHHHHHHHHHHHH
Confidence 9998854 788888866554 56888999999999998887766664 4799999999 77788999999999999
Q ss_pred hhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcC
Q 037121 572 LAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSN 617 (683)
Q Consensus 572 La~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~ 617 (683)
|+.++.....++.+++++.++.++....+...-..++.+..|+..+
T Consensus 161 LS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 161 LSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred hccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998764566778888888888664
No 19
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.51 E-value=1.3e-12 Score=145.13 Aligned_cols=284 Identities=20% Similarity=0.183 Sum_probs=222.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCch--hhHHHHhcCChHHHHhhcCC-CCHHHHHHHHHHHHhhccCCchhh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIF--NRSCIVESGAIPPLLNLLSS-PDQCVQENAVAALLKLSKHTSGKK 454 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~--~r~~i~~~G~i~~Lv~lL~s-~d~~~q~~A~~aL~nLs~~~~~r~ 454 (683)
.|+.||..|.+.+.++|..|+++|++|...... |+..+.+.|+||.++++|+. .|.+++++...+|+||+.++.-|.
T Consensus 276 gI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~ 355 (717)
T KOG1048|consen 276 GIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKM 355 (717)
T ss_pred cHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHH
Confidence 678999999999999999999999999987655 99999999999999999987 899999999999999999977777
Q ss_pred HHhhcCcHHHHHHHHcCCC-------------CHHHHHHHHHHHHHhcc-CchhHHHhhccCCChHHHHHhhhc------
Q 037121 455 VIVESGGLKVILKVLKSGL-------------SLEARQIAAATLFYLTS-VKGYRKLIGETPKAIPALVKLIEE------ 514 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~~~-------------~~e~~~~Aa~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~------ 514 (683)
.|+.. ++..|..-+-.++ ..++..+++.+|.|++. ..+.++.+....|.|..|+..+++
T Consensus 356 ~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~ 434 (717)
T KOG1048|consen 356 LIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSD 434 (717)
T ss_pred HHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhcc
Confidence 77744 4555555443221 14567899999999988 677888888888999999888763
Q ss_pred CCHHHHHHHHHHHHHcccCCc-----------------------------------------------------------
Q 037121 515 GTDCGKKNAVVAIFGLLLSQG----------------------------------------------------------- 535 (683)
Q Consensus 515 ~~~~~~~~A~~aL~nLs~~~~----------------------------------------------------------- 535 (683)
-+...+++++-.|.||+..-+
T Consensus 435 ~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~L 514 (717)
T KOG1048|consen 435 LDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWL 514 (717)
T ss_pred ccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceee
Confidence 234556666666666653211
Q ss_pred ------------------------------------------hhhhH-hhcCcHHHHHHHHccCCChhHHHHHHHHHHHh
Q 037121 536 ------------------------------------------NHQKV-LDAGTVPLLADILASSNRTELITDSLAVLANL 572 (683)
Q Consensus 536 ------------------------------------------n~~~i-v~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nL 572 (683)
.+..+ .+..+.+.|+++| ...++.++..+.++|.||
T Consensus 515 w~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll-~~~~~~vv~s~a~~LrNl 593 (717)
T KOG1048|consen 515 WHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELL-RNDDSDVVRSAAGALRNL 593 (717)
T ss_pred ecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHH-hcCCchHHHHHHHHHhhh
Confidence 01112 3444677888888 677889999999999999
Q ss_pred hCChhhHHHHHhcCChHHHHHhhccCCC-----hHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcC-CHH
Q 037121 573 AEDIQGTSTILKTSALPVIIGLLQTLTS-----RAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDG-TSQ 646 (683)
Q Consensus 573 a~~~~~~~~i~~~g~i~~Lv~lL~~~~s-----~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g-~~~ 646 (683)
+.+..++..|. .++++.|++.|..+.. ...-..++.+|.++...+.. ..+.+.+ .+.++.|+.|..+. +++
T Consensus 594 s~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~-nAkdl~~-~~g~~kL~~I~~s~~S~k 670 (717)
T KOG1048|consen 594 SRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVL-NAKDLLE-IKGIPKLRLISKSQHSPK 670 (717)
T ss_pred ccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHH-HHHHHHh-ccChHHHHHHhcccCCHH
Confidence 99999999888 6889999999987532 55777888899999987644 4555665 78899999998775 567
Q ss_pred HHHHHHHHHHHHHHhhhhcC
Q 037121 647 ARKKARSLIKILHKFIETCS 666 (683)
Q Consensus 647 ~k~~A~~lL~~l~~~~~~~~ 666 (683)
.-+.|..+|..|-.+.+.++
T Consensus 671 ~~kaAs~vL~~lW~y~eLh~ 690 (717)
T KOG1048|consen 671 EFKAASSVLDVLWQYKELHF 690 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 88889999998888776543
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.40 E-value=1.2e-10 Score=130.77 Aligned_cols=275 Identities=18% Similarity=0.192 Sum_probs=219.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIV 457 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~ 457 (683)
..+.|...|.+.++.+|.-+++.|+.++.++......+.+.++++.++.+|.++|..+...|+.+|.+|+.++.+-..++
T Consensus 78 ~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~ 157 (503)
T PF10508_consen 78 YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLF 157 (503)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHh
Confidence 56788889999999999999999999998777767778889999999999999999999999999999999988888888
Q ss_pred hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchh
Q 037121 458 ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNH 537 (683)
Q Consensus 458 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~ 537 (683)
..+.+..|..++... +..+|-.+..++.+++...+....+....|.++.++..+.++|.-++.+|+..|..|+..+.+.
T Consensus 158 ~~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~ 236 (503)
T PF10508_consen 158 DSNLLSKLKSLMSQS-SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGL 236 (503)
T ss_pred CcchHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHH
Confidence 888899999999986 7788989999999998776655555555899999999999988889999999999999999999
Q ss_pred hhHhhcCcHHHHHHHHccCC-Ch----hHHHHHHHHHHHhhCC-hhhHHHHHhcC-ChHHHHHhhccCCChHHHHHHHHH
Q 037121 538 QKVLDAGTVPLLADILASSN-RT----ELITDSLAVLANLAED-IQGTSTILKTS-ALPVIIGLLQTLTSRAGKEYCVSI 610 (683)
Q Consensus 538 ~~iv~~g~v~~Lv~lL~~~~-~~----~~~~~al~iL~nLa~~-~~~~~~i~~~g-~i~~Lv~lL~~~~s~~~ke~A~~~ 610 (683)
..+.+.|+++.|+.++.... ++ -+.-..+...++++.. +... +.... .+..+..++.+. ++..+..|+.+
T Consensus 237 ~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v--~~~~p~~~~~l~~~~~s~-d~~~~~~A~dt 313 (503)
T PF10508_consen 237 QYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEV--LELYPAFLERLFSMLESQ-DPTIREVAFDT 313 (503)
T ss_pred HHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHH--HHHHHHHHHHHHHHhCCC-ChhHHHHHHHH
Confidence 99999999999999995332 22 1333445677777763 3211 11112 245666677777 88899999999
Q ss_pred HHHHhcCChHHHHHHH-hcCCC----cHHHHHHhHhcCCHHHHHHHHHHHHHH
Q 037121 611 LLSLCSNAREEVTASL-AKDPS----LMNSLYSLTTDGTSQARKKARSLIKIL 658 (683)
Q Consensus 611 L~~L~~~~~~~~~~~l-~~~~g----~i~~L~~Ll~~g~~~~k~~A~~lL~~l 658 (683)
+..+|+.. +-...+ ....+ ++........+|+..+|.++...+..+
T Consensus 314 lg~igst~--~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 314 LGQIGSTV--EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI 364 (503)
T ss_pred HHHHhCCH--HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 99999763 334444 33222 455555566778888898888877766
No 21
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.39 E-value=2.3e-12 Score=148.18 Aligned_cols=227 Identities=15% Similarity=0.145 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHHhcCchhhHHHHhc-CChHHHHhhcCCCCHHHHHHHHHHHHhhccCCc-h-hhHHhhcCcHHHHHHH
Q 037121 392 EEKNKAAYEIRLLAKSNIFNRSCIVES-GAIPPLLNLLSSPDQCVQENAVAALLKLSKHTS-G-KKVIVESGGLKVILKV 468 (683)
Q Consensus 392 ~~~~~a~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~-~-r~~i~~~g~i~~Lv~l 468 (683)
..++.|..+|.||.+.+..|+..+... |+++.+|..|.+...+++...+.+|.||+..-+ | |+.+-+.|-+..|+.+
T Consensus 366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~ 445 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAAC 445 (2195)
T ss_pred HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHH
Confidence 467889999999999999999988765 999999999999888999999999999997644 4 6666689999999886
Q ss_pred HcCCCCHHHHHHHHHHHHHhcc-CchhHHHhhccCCChHHHHHhhhcC----CHHHHHHHHHHHHHcccC----Cchhhh
Q 037121 469 LKSGLSLEARQIAAATLFYLTS-VKGYRKLIGETPKAIPALVKLIEEG----TDCGKKNAVVAIFGLLLS----QGNHQK 539 (683)
Q Consensus 469 L~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~A~~aL~nLs~~----~~n~~~ 539 (683)
--...........+.+||||+. ..+||..|-.+.|++.+||.+|... .-.+++.|-.+|.|.+++ .+.+..
T Consensus 446 al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQI 525 (2195)
T KOG2122|consen 446 ALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQI 525 (2195)
T ss_pred HHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHH
Confidence 5443255677888999999987 4689999999999999999999754 357888999999998864 445677
Q ss_pred HhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhh-CChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCC
Q 037121 540 VLDAGTVPLLADILASSNRTELITDSLAVLANLA-EDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNA 618 (683)
Q Consensus 540 iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~ 618 (683)
+.++.++..|++.| .+.+-.++..+++.||||+ .+++..+.+++.|+++.|..++++. ....-+-++++|.||..+.
T Consensus 526 LR~~NCLq~LLQ~L-KS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 526 LRRHNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHHhhHHHHHHHHh-hhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCC
Confidence 88999999999999 5667888899999999996 6899999999999999999999988 8888888999999998876
Q ss_pred hH
Q 037121 619 RE 620 (683)
Q Consensus 619 ~~ 620 (683)
+.
T Consensus 604 PA 605 (2195)
T KOG2122|consen 604 PA 605 (2195)
T ss_pred ch
Confidence 43
No 22
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.36 E-value=8.5e-11 Score=121.54 Aligned_cols=282 Identities=13% Similarity=0.105 Sum_probs=213.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC----C---CHHHHHHHHHHHHhhccCC
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS----P---DQCVQENAVAALLKLSKHT 450 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s----~---d~~~q~~A~~aL~nLs~~~ 450 (683)
.++.|.+..+|.+.++-.+..+.|.++|.++.++|..+.+.|+-..++..|+. + +.+.-..+.+.|.|-..+.
T Consensus 88 ~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~ 167 (604)
T KOG4500|consen 88 ALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDS 167 (604)
T ss_pred HHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCc
Confidence 56677777777788888999999999999999999999999997777777764 2 2356667788899988777
Q ss_pred ch-hhHHhhcCcHHHHHHHHcCCC-CHHHHH--------------------------------------------HHHHH
Q 037121 451 SG-KKVIVESGGLKVILKVLKSGL-SLEARQ--------------------------------------------IAAAT 484 (683)
Q Consensus 451 ~~-r~~i~~~g~i~~Lv~lL~~~~-~~e~~~--------------------------------------------~Aa~~ 484 (683)
+. +.+.++.|+++.|...+.-++ +.+..+ -...+
T Consensus 168 ~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~fei 247 (604)
T KOG4500|consen 168 RELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEI 247 (604)
T ss_pred HHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHH
Confidence 66 889999999998877664322 111111 12222
Q ss_pred HHHhccCc-------------------------------------------------hhHHHhhccCCChHHHHHhhhcC
Q 037121 485 LFYLTSVK-------------------------------------------------GYRKLIGETPKAIPALVKLIEEG 515 (683)
Q Consensus 485 L~~Ls~~~-------------------------------------------------~~~~~i~~~~g~i~~Lv~lL~~~ 515 (683)
|...+.++ +.-......+.++..+++++.++
T Consensus 248 la~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~ 327 (604)
T KOG4500|consen 248 LAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSD 327 (604)
T ss_pred HHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCC
Confidence 22222222 11122222223677888888888
Q ss_pred CHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHcc----CCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHH
Q 037121 516 TDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILAS----SNRTELITDSLAVLANLAEDIQGTSTILKTSALPVI 591 (683)
Q Consensus 516 ~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~----~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~L 591 (683)
+...+..+..++.|++..++++..+++.|.+..|+.+|.. +++.+.+..++.+|+||.-...++..+..+|....+
T Consensus 328 d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaI 407 (604)
T KOG4500|consen 328 DSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAI 407 (604)
T ss_pred chhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHH
Confidence 8889999999999999999999999999999999999953 346788899999999999888889999999999999
Q ss_pred HHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHH-HHHHHHHHHHHHHHh
Q 037121 592 IGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQ-ARKKARSLIKILHKF 661 (683)
Q Consensus 592 v~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~-~k~~A~~lL~~l~~~ 661 (683)
+.+++.. +|++...-.+.| .|...+.+.....+.+....+..|+....+.+.. +-.+...++..|-++
T Consensus 408 L~~lk~~-~ppv~fkllgTl-rM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkH 476 (604)
T KOG4500|consen 408 LLQLKLA-SPPVTFKLLGTL-RMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKH 476 (604)
T ss_pred HHHHHhc-CCcchHHHHHHH-HHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHh
Confidence 9999988 889988888886 5555565667788888777999999999988765 344455555544433
No 23
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=7.5e-11 Score=123.18 Aligned_cols=260 Identities=20% Similarity=0.192 Sum_probs=198.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhH
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKV 455 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~ 455 (683)
+..+..||+.|..++.+.-.....-|..|+- ..+|+..+.+.|.|+.|+++....+++++...+..|+|||.+..+|.+
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~K 381 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPK 381 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHH
Confidence 4567889999988888888888888888886 468999999999999999999999999999999999999999999999
Q ss_pred HhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHH-HcccCC
Q 037121 456 IVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIF-GLLLSQ 534 (683)
Q Consensus 456 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~-nLs~~~ 534 (683)
|+..|.+|.++.+|.+. .-..-|...|..++.++..+..... ..+|+.|.+.+-++...-...++.+++ |||.+.
T Consensus 382 Mv~~GllP~l~~ll~~d---~~~~iA~~~lYh~S~dD~~K~Mfay-Tdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk 457 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDSD---TKHGIALNMLYHLSCDDDAKAMFAY-TDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK 457 (791)
T ss_pred HhhccchHHHHHHhCCc---ccchhhhhhhhhhccCcHHHHHHHH-HHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence 99999999999999986 2356789999999999988887777 899999999776665444444455443 777776
Q ss_pred chhhhHhhcCcHH-------------------------------------HHHHHHccCCChhHHHHHHHHHHHhhCChh
Q 037121 535 GNHQKVLDAGTVP-------------------------------------LLADILASSNRTELITDSLAVLANLAEDIQ 577 (683)
Q Consensus 535 ~n~~~iv~~g~v~-------------------------------------~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~ 577 (683)
.|...+++..++. .|...++.+++....-+|+++|+||.-.+-
T Consensus 458 RNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl 537 (791)
T KOG1222|consen 458 RNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDL 537 (791)
T ss_pred ccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC
Confidence 6655544443333 333444345566788889999999987666
Q ss_pred hHHHHHhcC-ChHHHHHhhccCC-ChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcC
Q 037121 578 GTSTILKTS-ALPVIIGLLQTLT-SRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDG 643 (683)
Q Consensus 578 ~~~~i~~~g-~i~~Lv~lL~~~~-s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g 643 (683)
....|++.. .+|-+-..|..|. .....-..+-++..++.. ..+...+.. +|+++.|++|++..
T Consensus 538 dw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d--~~cA~Lla~-a~~i~tlieLL~a~ 602 (791)
T KOG1222|consen 538 DWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD--LDCARLLAP-AKLIDTLIELLQAC 602 (791)
T ss_pred CHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh--hHHHHHhCc-cccHHHHHHHHHhh
Confidence 666666554 5888888777653 223333444444455544 455666665 89999999999865
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.22 E-value=3.4e-09 Score=119.06 Aligned_cols=274 Identities=18% Similarity=0.198 Sum_probs=214.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhH-Hhhc
Q 037121 381 FLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKV-IVES 459 (683)
Q Consensus 381 ~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~-i~~~ 459 (683)
.+...|.+.+.+....++..|..+..... -. .+ ..+..+.|...|.++++.++..++..|.++..+++.... +.+.
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~~-~~-~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSALS-PD-SL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhccC-HH-HH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 37777888777777778888887776331 11 11 467789999999999999999999999999988877444 4489
Q ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCch-hh
Q 037121 460 GGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGN-HQ 538 (683)
Q Consensus 460 g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n-~~ 538 (683)
+.++.++..|..+ +.++...|+.+|.+++........+.. .+.+..|..++...+..++-.+..++.+++...+. ..
T Consensus 119 ~l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~~~~~l~~-~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~ 196 (503)
T PF10508_consen 119 ELLPLIIQCLRDP-DLSVAKAAIKALKKLASHPEGLEQLFD-SNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAE 196 (503)
T ss_pred cHHHHHHHHHcCC-cHHHHHHHHHHHHHHhCCchhHHHHhC-cchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999998 899999999999999998887777777 77799999999887888888899999999876654 56
Q ss_pred hHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCC-ChH----HHHHHHHHHHH
Q 037121 539 KVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLT-SRA----GKEYCVSILLS 613 (683)
Q Consensus 539 ~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~-s~~----~ke~A~~~L~~ 613 (683)
.+.+.|+++.++..| .++|.-++..|+.+|..|+..+.|...+.+.|.++.|+.++.... +|+ .--..+....+
T Consensus 197 ~~~~sgll~~ll~eL-~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 197 AVVNSGLLDLLLKEL-DSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred HHHhccHHHHHHHHh-cCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 777789999999999 567888999999999999999999999999999999999887642 331 11122244455
Q ss_pred HhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhhh
Q 037121 614 LCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFIE 663 (683)
Q Consensus 614 L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~ 663 (683)
++...+..+.... +.++..|..++.++++..+.-|...+..+....+
T Consensus 276 la~~~~~~v~~~~---p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~ 322 (503)
T PF10508_consen 276 LARVSPQEVLELY---PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVE 322 (503)
T ss_pred HHhcChHHHHHHH---HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHH
Confidence 6654333332221 3456677777888888888888888877765443
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.18 E-value=3.2e-10 Score=101.57 Aligned_cols=118 Identities=33% Similarity=0.421 Sum_probs=105.4
Q ss_pred HHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccC-CchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc
Q 037121 414 CIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKH-TSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVK 492 (683)
Q Consensus 414 ~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~-~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~ 492 (683)
.+.+.|+++.|+.+|.+++..++..|+.+|.+++.+ +..+..+++.|+++.++.+|.++ +..++..|+++|.+|+...
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCc
Confidence 356889999999999999999999999999999988 56688888999999999999998 8999999999999999987
Q ss_pred hhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHccc
Q 037121 493 GYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLL 532 (683)
Q Consensus 493 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 532 (683)
..........|+++.|++++.+++...++.++++|.||+.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 5444443338999999999999999999999999999873
No 26
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.14 E-value=2.3e-11 Score=87.14 Aligned_cols=39 Identities=36% Similarity=0.857 Sum_probs=31.4
Q ss_pred CCCCcccCCCceeccCcccccHHHHHHHHHhCC---CCCCCC
Q 037121 282 CPISLELMTDPVTVSTGQTYDRSSIQKWLKAGN---MLCPKT 320 (683)
Q Consensus 282 CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~---~~CP~c 320 (683)
||||+++|.|||+++|||+||+.||.+|+.... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998732 469986
No 27
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.14 E-value=7.7e-10 Score=99.09 Aligned_cols=117 Identities=28% Similarity=0.404 Sum_probs=105.8
Q ss_pred HHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC-chhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccC
Q 037121 455 VIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSV-KGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLS 533 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 533 (683)
.+++.|+++.++.+|.++ +...+..++++|.+++.. +++...+.. .|+++.|++++.++++.++..|+++|.||+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 2 AVIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSEDEEVVKAALWALRNLAAG 79 (120)
T ss_pred hHHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCCCHHHHHHHHHHHHHHccC
Confidence 467899999999999998 799999999999999998 667777777 89999999999999999999999999999988
Q ss_pred Cc-hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC
Q 037121 534 QG-NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE 574 (683)
Q Consensus 534 ~~-n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~ 574 (683)
.. ....+++.|+++.|+++| .+.+..+++.++.+|.+|+.
T Consensus 80 ~~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 80 PEDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred cHHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 75 567788899999999999 67789999999999999874
No 28
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.09 E-value=6.4e-11 Score=112.06 Aligned_cols=59 Identities=29% Similarity=0.525 Sum_probs=52.2
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHh---------------CCCCCCCCCcccCCCCCCCcH
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKA---------------GNMLCPKTGEKLTNTELLPNT 333 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~---------------~~~~CP~c~~~l~~~~l~pn~ 333 (683)
+..++|.||||++.+.|||+++|||.||+.||.+|+.. +...||.|+..+....++|.+
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 56778999999999999999999999999999999853 245899999999888888875
No 29
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=1.5e-10 Score=122.79 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=65.7
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHHHHHHHhcC
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLIHQFCADNG 347 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~ 347 (683)
.+...+.||||.+++.+||+++|||+||..||..|+.. ...||.|+..+....+.+|..+.++|+.|.....
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R~ 93 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNLRP 93 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHhhH
Confidence 67889999999999999999999999999999999986 5689999999887789999999999999976543
No 30
>PRK09687 putative lyase; Provisional
Probab=99.02 E-value=3.3e-08 Score=102.39 Aligned_cols=235 Identities=14% Similarity=0.057 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchh
Q 037121 374 AMKLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGK 453 (683)
Q Consensus 374 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r 453 (683)
.....+..|+..|.+.+..++..|++.|..+-. ..+++.+..++.++|+.++..|+++|+.|......
T Consensus 20 ~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~- 87 (280)
T PRK09687 20 CKKLNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC- 87 (280)
T ss_pred HhhccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-
Confidence 344566778888888888888888877665532 33456677777777788888888887777532211
Q ss_pred hHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccC
Q 037121 454 KVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLS 533 (683)
Q Consensus 454 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 533 (683)
...+++.|..++.+..+..+|..|+.+|.++....... . ..++..|...+.+++..++..|+.+|.++.
T Consensus 88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~-~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-- 156 (280)
T PRK09687 88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----S-PKIVEQSQITAFDKSTNVRFAVAFALSVIN-- 156 (280)
T ss_pred ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----c-hHHHHHHHHHhhCCCHHHHHHHHHHHhccC--
Confidence 12345666666444336777777777777764322100 0 112333444444445555555555554331
Q ss_pred CchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHH----------------------HHhcCChHH
Q 037121 534 QGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTST----------------------ILKTSALPV 590 (683)
Q Consensus 534 ~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~----------------------i~~~g~i~~ 590 (683)
...+++.|+.+| .+++..++..|+..|+.+.. ++..... +....+++.
T Consensus 157 --------~~~ai~~L~~~L-~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~ 227 (280)
T PRK09687 157 --------DEAAIPLLINLL-KDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSV 227 (280)
T ss_pred --------CHHHHHHHHHHh-cCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHH
Confidence 112444555555 34444455555555554421 1100000 001134555
Q ss_pred HHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHh-cCCHHHHHHHHHHHH
Q 037121 591 IIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTT-DGTSQARKKARSLIK 656 (683)
Q Consensus 591 Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-~g~~~~k~~A~~lL~ 656 (683)
|++.|+.+ . .+..|+.+|..+... -.+|.|..++. +.+++++++|.+.|+
T Consensus 228 Li~~L~~~-~--~~~~a~~ALg~ig~~-------------~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 228 LIKELKKG-T--VGDLIIEAAGELGDK-------------TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHcCC-c--hHHHHHHHHHhcCCH-------------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 55555543 2 333444444443321 13677777876 778888888887765
No 31
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=8.7e-09 Score=108.02 Aligned_cols=197 Identities=17% Similarity=0.205 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhh
Q 037121 434 CVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIE 513 (683)
Q Consensus 434 ~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~ 513 (683)
.+...|+..|.||+.+-.--.+|.....+..||+.|+.. +.+........|..|+..++|+..+++ .|.+..|++++.
T Consensus 278 qLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf~eNK~~M~~-~~iveKL~klfp 355 (791)
T KOG1222|consen 278 QLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRS-NSSLLTLVIKFLKKLSIFDENKIVMEQ-NGIVEKLLKLFP 355 (791)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHccc-chHHHHHHHHHHHHhhhhccchHHHHh-ccHHHHHHHhcC
Confidence 345578899999998887788888999999999999998 889999999999999999999999999 999999999999
Q ss_pred cCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHH
Q 037121 514 EGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIG 593 (683)
Q Consensus 514 ~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~ 593 (683)
..++..++..+..|+||+.+.+++.+++..|.+|.|+.+|.++. -..-|+.+|..++.++..+..+..+.+|+.+.+
T Consensus 356 ~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~---~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk 432 (791)
T KOG1222|consen 356 IQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT---KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMK 432 (791)
T ss_pred CCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc---cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999994333 334588899999999999999999999999999
Q ss_pred hhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHH
Q 037121 594 LLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYS 638 (683)
Q Consensus 594 lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~ 638 (683)
.+-.+...++--.-++...|||.+. .-++.+.++. .+..|.+
T Consensus 433 ~v~~~~~~~vdl~lia~ciNl~lnk--RNaQlvceGq-gL~~LM~ 474 (791)
T KOG1222|consen 433 DVLSGTGSEVDLALIALCINLCLNK--RNAQLVCEGQ-GLDLLME 474 (791)
T ss_pred HHHhcCCceecHHHHHHHHHHHhcc--ccceEEecCc-chHHHHH
Confidence 5555434444444455556888863 2334444433 3444444
No 32
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.97 E-value=8.1e-09 Score=109.27 Aligned_cols=234 Identities=20% Similarity=0.165 Sum_probs=167.4
Q ss_pred ChHHHHhhcCC--CCHHHHHHHHHHHHhhccCCchhhHHh-h------cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Q 037121 420 AIPPLLNLLSS--PDQCVQENAVAALLKLSKHTSGKKVIV-E------SGGLKVILKVLKSGLSLEARQIAAATLFYLTS 490 (683)
Q Consensus 420 ~i~~Lv~lL~s--~d~~~q~~A~~aL~nLs~~~~~r~~i~-~------~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~ 490 (683)
....++.+|+. .+.++....+..+..|..+++.+..++ . .....+++.++.++ +.-....|+.+|..|..
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLS 134 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 35555565543 688999999999999887776655444 2 23688999988888 88999999999999987
Q ss_pred CchhHHHhhccCCChHHHHHhhhc----CCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHH------ccCCChh
Q 037121 491 VKGYRKLIGETPKAIPALVKLIEE----GTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADIL------ASSNRTE 560 (683)
Q Consensus 491 ~~~~~~~i~~~~g~i~~Lv~lL~~----~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL------~~~~~~~ 560 (683)
.......... .+.++.+++++.+ ++...+..|+.+|.+|...++.+..+.+.|+++.|+.+| .+..+..
T Consensus 135 ~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 135 QGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp STTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred cCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 6655444433 4577888887765 334566889999999999999999999999999999999 3445678
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhH
Q 037121 561 LITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLT 640 (683)
Q Consensus 561 ~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll 640 (683)
++..++-++|.|+.+++....+.+.+.++.|+++++....+++..-++++|.||...........|.. .|+.+.+-.|.
T Consensus 214 l~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~-~~~l~~l~~L~ 292 (312)
T PF03224_consen 214 LQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVL-CGLLKTLQNLS 292 (312)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHH-H-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHH-ccHHHHHHHHh
Confidence 99999999999999999999999999999999999886567788899999999999876556677765 56666655555
Q ss_pred hcC--CHHHHHHHHHHHH
Q 037121 641 TDG--TSQARKKARSLIK 656 (683)
Q Consensus 641 ~~g--~~~~k~~A~~lL~ 656 (683)
... ++.+.+--..+..
T Consensus 293 ~rk~~Dedl~edl~~L~e 310 (312)
T PF03224_consen 293 ERKWSDEDLTEDLEFLKE 310 (312)
T ss_dssp SS--SSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHh
Confidence 443 7777765555443
No 33
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=5.2e-07 Score=100.14 Aligned_cols=292 Identities=18% Similarity=0.257 Sum_probs=215.1
Q ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC--CCHHHHHHHHHHHHhhccCCc---
Q 037121 378 MSRFLARRLFFGT-NEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS--PDQCVQENAVAALLKLSKHTS--- 451 (683)
Q Consensus 378 ~i~~Lv~~L~s~~-~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~q~~A~~aL~nLs~~~~--- 451 (683)
+|+.|+.++.+.. .+.|+.|+..|+.+++ .+|..++..| +++|++.|.. .|+++...++.+++++..+++
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 8999999997764 6889999999999998 5788887666 7899999976 689999999999999977663
Q ss_pred ---h-h----------hHHh-hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhcc--CchhHHHhhccCCChHHHHHhhhc
Q 037121 452 ---G-K----------KVIV-ESGGLKVILKVLKSGLSLEARQIAAATLFYLTS--VKGYRKLIGETPKAIPALVKLIEE 514 (683)
Q Consensus 452 ---~-r----------~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~--~~~~~~~i~~~~g~i~~Lv~lL~~ 514 (683)
+ + +.++ ..+.|..++..+... +..+|..+...+.+|-. ..+.+..+..-+.+|..|+++|.+
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 2 2 3344 678899999999887 88999999999999865 345666776668999999999998
Q ss_pred CCHHHHHHHHHHHHHcccCCchhhhHhhc-CcHHHHHHHHccCC---ChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChH
Q 037121 515 GTDCGKKNAVVAIFGLLLSQGNHQKVLDA-GTVPLLADILASSN---RTELITDSLAVLANLAE-DIQGTSTILKTSALP 589 (683)
Q Consensus 515 ~~~~~~~~A~~aL~nLs~~~~n~~~iv~~-g~v~~Lv~lL~~~~---~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~ 589 (683)
....++-+|+..|..|..+..+..++|.- +++..|..++...+ ..-+++.|+.+|-||-. +..+...+.+.+-||
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 88888889999999999988887766654 89999999995433 23588999999999986 455666777777799
Q ss_pred HHHHhhccCC--Ch----H------HHHHHHHHHHHHhcCCh-----HHHHHHHhcCCCcHHHHHHhHhcC-C-HHHHHH
Q 037121 590 VIIGLLQTLT--SR----A------GKEYCVSILLSLCSNAR-----EEVTASLAKDPSLMNSLYSLTTDG-T-SQARKK 650 (683)
Q Consensus 590 ~Lv~lL~~~~--s~----~------~ke~A~~~L~~L~~~~~-----~~~~~~l~~~~g~i~~L~~Ll~~g-~-~~~k~~ 650 (683)
.|.++|.... +. + .-..|+.++..+...++ ..+++++.. .+++..|..++-+. - ..++..
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~s-s~ll~~Lc~il~~~~vp~dIlte 336 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVS-SHLLDVLCTILMHPGVPADILTE 336 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH-cchHHHHHHHHcCCCCcHhHHHH
Confidence 9998876521 11 1 22235556666665543 234567776 78888888877655 2 334444
Q ss_pred HHHHHH-HHHHhh--hhcCCCCCCCCCC
Q 037121 651 ARSLIK-ILHKFI--ETCSSGVEGSAVP 675 (683)
Q Consensus 651 A~~lL~-~l~~~~--~~~~~~~~~~~~~ 675 (683)
+.-.+. ..|..+ +..+.....|+.|
T Consensus 337 siitvAevVRgn~~nQ~~F~~v~~p~~~ 364 (970)
T KOG0946|consen 337 SIITVAEVVRGNARNQDEFADVTAPSIP 364 (970)
T ss_pred HHHHHHHHHHhchHHHHHHhhccCCCCC
Confidence 444444 444332 3444444445444
No 34
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=8.3e-10 Score=106.19 Aligned_cols=59 Identities=24% Similarity=0.508 Sum_probs=52.9
Q ss_pred CCCCccCCCCcccCCCceeccCcccccHHHHHHHHHh--CCCCCCCCCcccCCCCCCCcHH
Q 037121 276 NPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKA--GNMLCPKTGEKLTNTELLPNTT 334 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~--~~~~CP~c~~~l~~~~l~pn~~ 334 (683)
.-..|.|.||++.-+|||++.|||-||+.||.+|+.. +...||+|+...+.+.++|-|.
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 3558999999999999999999999999999999986 4567999999999999988764
No 35
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.86 E-value=7.6e-10 Score=110.56 Aligned_cols=71 Identities=21% Similarity=0.377 Sum_probs=64.8
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHHHHHHHhc
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLIHQFCADN 346 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~ 346 (683)
.+.+-++|-||.++|+-||+++||||||.-||..++.. ++.||.|...+....++.|..+.++|+.|...+
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~R 89 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNFAR 89 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHHHH
Confidence 56678999999999999999999999999999999987 999999999999999999999999998875543
No 36
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.84 E-value=1.9e-09 Score=76.28 Aligned_cols=38 Identities=37% Similarity=0.820 Sum_probs=33.5
Q ss_pred CCCCcccCCCc-eeccCcccccHHHHHHHHHhCCCCCCCC
Q 037121 282 CPISLELMTDP-VTVSTGQTYDRSSIQKWLKAGNMLCPKT 320 (683)
Q Consensus 282 CpIc~~~m~dP-v~~~cght~~r~cI~~w~~~~~~~CP~c 320 (683)
||||++.+.+| ++++|||+||+.||.+|+.. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 56899999999999999998 7899987
No 37
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.7e-07 Score=102.95 Aligned_cols=257 Identities=18% Similarity=0.163 Sum_probs=198.6
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHH-HHhcCchhhHHHHhcCChHHHHhhcCC-CCHHHHHHHHHHHHhhccC-Cchh
Q 037121 378 MSRFLARRLFFG-TNEEKNKAAYEIRL-LAKSNIFNRSCIVESGAIPPLLNLLSS-PDQCVQENAVAALLKLSKH-TSGK 453 (683)
Q Consensus 378 ~i~~Lv~~L~s~-~~~~~~~a~~~L~~-La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~q~~A~~aL~nLs~~-~~~r 453 (683)
.++.|++.|... ++..|.+|+.+|-. |.-.+.+.-..|--.-++|.|+.+|+. .+.+++.+|+.+|.+|+.. +...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 578889999766 77889999988764 444555555555555789999999988 5899999999999999965 4457
Q ss_pred hHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccC
Q 037121 454 KVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLS 533 (683)
Q Consensus 454 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 533 (683)
..+++.++||.++.-|..-....+-|++..+|..++..+ -+.|.+ .|++...+..|.=-+..+++.|+.+..|+|..
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~-AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks 324 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQ-AGALSAVLSYLDFFSIHAQRVALAIAANCCKS 324 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777799999999997776447889999999999999854 456667 89999999998877889999999999999964
Q ss_pred --CchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC----ChhhHHHHHhcCChHHHHHhhccCC---ChHHH
Q 037121 534 --QGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE----DIQGTSTILKTSALPVIIGLLQTLT---SRAGK 604 (683)
Q Consensus 534 --~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~----~~~~~~~i~~~g~i~~Lv~lL~~~~---s~~~k 604 (683)
++.-..+++ ++|.|..+| +..+...++.++-++..++. .++--+.+...|.|....+++.... +....
T Consensus 325 i~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 325 IRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred CCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 444444544 699999999 67778888888888888863 4666788899898998888876642 23345
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhc
Q 037121 605 EYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTD 642 (683)
Q Consensus 605 e~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~ 642 (683)
---+..|..||++.+. ....+.+ .++...|..++..
T Consensus 402 ~~vIrmls~msS~~pl-~~~tl~k-~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGSPL-LFRTLLK-LDIADTLKRILQG 437 (1051)
T ss_pred hHHHHHHHHHccCChH-HHHHHHH-hhHHHHHHHHHhc
Confidence 5566677777777543 3444555 7888888888764
No 38
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.79 E-value=5.9e-07 Score=93.62 Aligned_cols=279 Identities=11% Similarity=0.104 Sum_probs=202.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC-CCH-------HHHHHHHHHHHhhccC
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS-PDQ-------CVQENAVAALLKLSKH 449 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~-------~~q~~A~~aL~nLs~~ 449 (683)
.+-.+++.|.+.-.+...+++-++-.-+.+++.-+-.+++.|.++.++.++.. .+- ..-..+.....-|...
T Consensus 224 l~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltG 303 (604)
T KOG4500|consen 224 LVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTG 303 (604)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcC
Confidence 34455566655433334455555555555688889999999999999999875 221 2222333333344455
Q ss_pred CchhhHHhhcC-cHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhc-----CCHHHHHHH
Q 037121 450 TSGKKVIVESG-GLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEE-----GTDCGKKNA 523 (683)
Q Consensus 450 ~~~r~~i~~~g-~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~A 523 (683)
++.-..+...| .+.-+++.+.+. +......++-++.|++..++++..++. .|.+..|+++|.. |+.+.+..+
T Consensus 304 DeSMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~ 381 (604)
T KOG4500|consen 304 DESMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHAC 381 (604)
T ss_pred chHHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHH
Confidence 55544555555 889999999998 778888899999999999999999999 8999999998854 567889999
Q ss_pred HHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChh-hHHHHHhcCC-hHHHHHhhccCCCh
Q 037121 524 VVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQ-GTSTILKTSA-LPVIIGLLQTLTSR 601 (683)
Q Consensus 524 ~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~-~~~~i~~~g~-i~~Lv~lL~~~~s~ 601 (683)
+.||.||...-.|+..++.+|.++.++..+ ....+.++..-++.|+.+-...+ ....+.+..- +..|+..-++.+..
T Consensus 382 lsALRnl~IPv~nka~~~~aGvteaIL~~l-k~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~a 460 (604)
T KOG4500|consen 382 LSALRNLMIPVSNKAHFAPAGVTEAILLQL-KLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFA 460 (604)
T ss_pred HHHHHhccccCCchhhccccchHHHHHHHH-HhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccc
Confidence 999999999999999999999999999999 56678888899999998875444 4455555443 66777766665222
Q ss_pred HHHHHHHHHHHHHhcCCh-HHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHH
Q 037121 602 AGKEYCVSILLSLCSNAR-EEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHK 660 (683)
Q Consensus 602 ~~ke~A~~~L~~L~~~~~-~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 660 (683)
.+--.....|.-|.+++. .++...+.+ .|++..++.++...+-.++.+|.-++-.+..
T Consensus 461 Gv~gESnRll~~lIkHs~~kdv~~tvpk-sg~ik~~Vsm~t~~hi~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 461 GVAGESNRLLLGLIKHSKYKDVILTVPK-SGGIKEKVSMFTKNHINMQNEALVALLSTES 519 (604)
T ss_pred hhhhhhhHHHHHHHHhhHhhhhHhhccc-cccHHHHHHHHHHhhHHHhHHHHHHHHHHHH
Confidence 345556667777777642 345566666 7789999999888877777777666655544
No 39
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.79 E-value=4.3e-07 Score=96.13 Aligned_cols=213 Identities=22% Similarity=0.245 Sum_probs=159.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHh------cCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhh
Q 037121 381 FLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVE------SGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKK 454 (683)
Q Consensus 381 ~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~------~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~ 454 (683)
.|++.+ +++.+.....+..+..+..+++.....+.+ .....++++++.++|.-++..|+.+|..|......+.
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~ 140 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS 140 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence 444555 567888888998899888877766555555 2367889999999999999999999999987766644
Q ss_pred HHhhcCcHHHHHHHHcCCC---CHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhh-----hc--CCHHHHHHHH
Q 037121 455 VIVESGGLKVILKVLKSGL---SLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLI-----EE--GTDCGKKNAV 524 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~~~---~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL-----~~--~~~~~~~~A~ 524 (683)
.-...+.++.++..|.+.. +.+....|+..|.+|...++++..+.. .++++.|++++ .+ .+...+-.++
T Consensus 141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~l 219 (312)
T PF03224_consen 141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQAL 219 (312)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------HHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHH
Confidence 4444677899999888632 334568899999999999999999999 99999999999 22 2346777999
Q ss_pred HHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChh--hHHHHHhcCChHHHHHhh
Q 037121 525 VAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQ--GTSTILKTSALPVIIGLL 595 (683)
Q Consensus 525 ~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~--~~~~i~~~g~i~~Lv~lL 595 (683)
.+++-|+.+++....+.+.+.|+.|+++++......+..-++++|.||...+. ....++..|+++.+-.+.
T Consensus 220 l~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~ 292 (312)
T PF03224_consen 220 LCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLS 292 (312)
T ss_dssp HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence 99999999999999999999999999999888889999999999999987544 777777766555544443
No 40
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.74 E-value=2.4e-06 Score=92.38 Aligned_cols=274 Identities=12% Similarity=0.049 Sum_probs=192.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCC-CHHHHHHHHHHHHhhccCCchhhHHhhc
Q 037121 381 FLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSP-DQCVQENAVAALLKLSKHTSGKKVIVES 459 (683)
Q Consensus 381 ~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~-d~~~q~~A~~aL~nLs~~~~~r~~i~~~ 459 (683)
.++..|...+.-++..|+..|..+...+..+.......-....|...|++. +...+.-|+.+|.+|...+..|..+.+.
T Consensus 105 ~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~ 184 (429)
T cd00256 105 PFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLA 184 (429)
T ss_pred HHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHc
Confidence 344577777888899999999888765443211111111334555666653 5788888999999999999999999988
Q ss_pred CcHHHHHHHHcCCC-CHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCC-HHHHHHHHHHHHHcccCCc--
Q 037121 460 GGLKVILKVLKSGL-SLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGT-DCGKKNAVVAIFGLLLSQG-- 535 (683)
Q Consensus 460 g~i~~Lv~lL~~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~~~-- 535 (683)
++++.|+.+|+... +....-+++-+++-|+...+....... .+.|+.|+++++... ..+.+-++.+|.||.....
T Consensus 185 ~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~ 263 (429)
T cd00256 185 DGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDR 263 (429)
T ss_pred cCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccc
Confidence 89999999998753 568889999999999998886665555 899999999998744 5788899999999998542
Q ss_pred -----hhhhHhhcCcHHHHHHHHccC--CChhHHHHHHHHHH-------HhhCC------------------------hh
Q 037121 536 -----NHQKVLDAGTVPLLADILASS--NRTELITDSLAVLA-------NLAED------------------------IQ 577 (683)
Q Consensus 536 -----n~~~iv~~g~v~~Lv~lL~~~--~~~~~~~~al~iL~-------nLa~~------------------------~~ 577 (683)
....+++.|..+.+ +.|... .|+++.+..-.+-. .+++- .+
T Consensus 264 ~~~~~~~~~mv~~~l~~~l-~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E 342 (429)
T cd00256 264 EVKKTAALQMVQCKVLKTL-QSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE 342 (429)
T ss_pred chhhhHHHHHHHcChHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence 34677777766544 444232 35554443222111 12211 14
Q ss_pred hHHHHHhcCC--hHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHH
Q 037121 578 GTSTILKTSA--LPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLI 655 (683)
Q Consensus 578 ~~~~i~~~g~--i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL 655 (683)
+...+-+.+. +..|+++|....++..-.-|+.=+..++++-+. ....+.+ .|+=..+++|+.+.++.+|..|..++
T Consensus 343 N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~-gr~i~~~-lg~K~~vM~Lm~h~d~~Vr~eAL~av 420 (429)
T cd00256 343 NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPR-GKDVVEQ-LGGKQRVMRLLNHEDPNVRYEALLAV 420 (429)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc-HHHHHHH-cCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 4555556565 688899996543566666666667778877532 2334444 78899999999999999999999988
Q ss_pred HHH
Q 037121 656 KIL 658 (683)
Q Consensus 656 ~~l 658 (683)
+-|
T Consensus 421 Qkl 423 (429)
T cd00256 421 QKL 423 (429)
T ss_pred HHH
Confidence 744
No 41
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.70 E-value=9e-09 Score=73.68 Aligned_cols=36 Identities=31% Similarity=0.738 Sum_probs=23.5
Q ss_pred CCCCcccCCC----ceeccCcccccHHHHHHHHHhC---CCCCC
Q 037121 282 CPISLELMTD----PVTVSTGQTYDRSSIQKWLKAG---NMLCP 318 (683)
Q Consensus 282 CpIc~~~m~d----Pv~~~cght~~r~cI~~w~~~~---~~~CP 318 (683)
||||.+ |.+ |++++|||+||+.||+++...+ .+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 888 9999999999999999999964 45676
No 42
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1e-08 Score=101.53 Aligned_cols=54 Identities=22% Similarity=0.500 Sum_probs=48.0
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCC
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTEL 329 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l 329 (683)
..+..+.|.+|++-+.+|-.++|||.||++||..|+.+ ...||.||..+.+..+
T Consensus 235 i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence 45667999999999999999999999999999999998 6679999998876544
No 43
>PRK09687 putative lyase; Provisional
Probab=98.68 E-value=5.6e-07 Score=93.29 Aligned_cols=194 Identities=15% Similarity=0.128 Sum_probs=139.2
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHh
Q 037121 419 GAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLI 498 (683)
Q Consensus 419 G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i 498 (683)
-.++.|+.+|.+.|..++..|+.+|..+. ...+++.+..++.++ +..+|..|+++|..|-..+..
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~----------~~~~~~~l~~ll~~~-d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRG----------GQDVFRLAIELCSSK-NPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcC----------cchHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCccc----
Confidence 35789999999999999999999998875 245678888888888 899999999999998543221
Q ss_pred hccCCChHHHHHh-hhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChh
Q 037121 499 GETPKAIPALVKL-IEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQ 577 (683)
Q Consensus 499 ~~~~g~i~~Lv~l-L~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~ 577 (683)
. ..+++.|..+ +++.++.++..|+.+|.+++....+. ...+++.+...+ .+++..++..++..|+.+..
T Consensus 88 -~-~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~--- 157 (280)
T PRK09687 88 -Q-DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND--- 157 (280)
T ss_pred -h-HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC---
Confidence 1 3478888887 56678899999999999996543221 112455666777 67788999999999975532
Q ss_pred hHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHH
Q 037121 578 GTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIK 656 (683)
Q Consensus 578 ~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~ 656 (683)
..+++.|+.+|... ++.++..|+.+|..+...+ + .+++.|+.++.+.+..+|..|.+.|.
T Consensus 158 -------~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~~~~~-~----------~~~~~L~~~L~D~~~~VR~~A~~aLg 217 (280)
T PRK09687 158 -------EAAIPLLINLLKDP-NGDVRNWAAFALNSNKYDN-P----------DIREAFVAMLQDKNEEIRIEAIIGLA 217 (280)
T ss_pred -------HHHHHHHHHHhcCC-CHHHHHHHHHHHhcCCCCC-H----------HHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 23578888888876 7788888888888774322 1 12334444555555555555555444
No 44
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=2.5e-06 Score=88.27 Aligned_cols=186 Identities=20% Similarity=0.179 Sum_probs=151.4
Q ss_pred cCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch-hhHHhhcCcHHHH
Q 037121 387 FFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KKVIVESGGLKVI 465 (683)
Q Consensus 387 ~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~-r~~i~~~g~i~~L 465 (683)
.+.+.+.+..|+..|..++. +.+|-.-+...|+..+++.+|.+++..+++.|+++++..+.+..- .+.+++.|+++.|
T Consensus 93 ~s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 34578899999999999997 678888899999999999999999999999999999999877654 8889999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhc--CCHHHHHHHHHHHHHcccCCc-hhhhHhh
Q 037121 466 LKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEE--GTDCGKKNAVVAIFGLLLSQG-NHQKVLD 542 (683)
Q Consensus 466 v~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~--~~~~~~~~A~~aL~nLs~~~~-n~~~iv~ 542 (683)
+.+|.+..+..++..|..++.+|-.+......-....++...|.+.+.+ .+...+..++..+.+|..... ....+-.
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 9999987688999999999999998776554444447789999999998 456788899999998887554 3444445
Q ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHhhC
Q 037121 543 AGTVPLLADILASSNRTELITDSLAVLANLAE 574 (683)
Q Consensus 543 ~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~ 574 (683)
.|....++.+. ..-+..+.+.++..+..+..
T Consensus 252 ~~f~~~~~~l~-~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 252 LGFQRVLENLI-SSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhhHHHHHHh-hccchhhhHHHHHHHHHHHH
Confidence 56666666666 66667777777777666553
No 45
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=3.8e-07 Score=88.50 Aligned_cols=248 Identities=21% Similarity=0.231 Sum_probs=145.6
Q ss_pred hhhhhHHHHHHHHhhhHHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHcccC-------cchhhhHHhhHHHHH
Q 037121 50 TQRRNAREAIRQIGILLIFFEEIRDRGLNLSDLVVLCFSELHLTFQKVQFLMEDCTRE-------GAKLWVLMKSQFIAT 122 (683)
Q Consensus 50 ~~k~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~-------~Sklyll~~~~~i~~ 122 (683)
+-|+.|..+..+ -++|.-+....+--.+.++|-|. ++.-....++|.+. -=+.|++.++-.-+.
T Consensus 22 ~~k~y~~ai~~y-------~raI~~nP~~~~Y~tnralchlk--~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 22 IPKRYDDAIDCY-------SRAICINPTVASYYTNRALCHLK--LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred chhhhchHHHHH-------HHHHhcCCCcchhhhhHHHHHHH--hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 556666555533 34555444444445677888776 66555556666521 114588888888889
Q ss_pred HHHHHHHHHHHHhhcCCCCCcccchhHHHHHHHHHHHHHHhhhcC--ChhHHHHHHHHH--HHHhh-hcCCCCCChHHHH
Q 037121 123 QFRVLIRAIATALDVFPLDTVDICGEVKELVDLVAKQARKAKFEL--DKEDERAMKRVL--SILNY-FEKGIEPDSGFMT 197 (683)
Q Consensus 123 ~f~~~~~~l~~~L~~lp~~~l~ls~ev~e~v~l~~~~~~~a~~~~--~~~~~~~~~~~~--~~l~~-~~~~~~~~~~~l~ 197 (683)
.|-.....|.++.+..--..+.--+++-++ +++|+..- -.+++++..++. +.+.. .+..+..+.+.++
T Consensus 93 ~~~eaI~~Lqra~sl~r~~~~~~~~di~~~-------L~~ak~~~w~v~e~~Ri~Q~~El~~yl~slie~~~~~~~s~~~ 165 (284)
T KOG4642|consen 93 GYDEAIKVLQRAYSLLREQPFTFGDDIPKA-------LRDAKKKRWEVSEEKRIRQELELHSYLESLIEGDRERELSEWQ 165 (284)
T ss_pred cccHHHHHHHHHHHHHhcCCCCCcchHHHH-------HHHHHhCccchhHHHHHHHHhhHHHHHHHHhccchhhHHHHHH
Confidence 999999999999888733333344555443 55555332 223334333321 11110 0111111111111
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHhhhcCCccchhchHHHHHHHHhhhhhhhccccccccccchhhcccccccCCCCC
Q 037121 198 WVLDYLEIKSWSDCNSEIKFLEELVALECSDSEEREVPFLSSLVGFMSYCRVVIFETLDYRSSDQIDVRCNMETLSCLNP 277 (683)
Q Consensus 198 ~~~~~l~l~~~~~~~~E~~~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (683)
.+ | -+...+ +.-+..++.... . -+..|-.+-+ ..+++ ....++|
T Consensus 166 --~N--~-~sde~~----k~~q~~~~~~~d----~---~~kel~elf~--------~v~e~------------rk~rEvp 209 (284)
T KOG4642|consen 166 --EN--G-ESDEHL----KTMQVPIEQDHD----H---TTKELSELFS--------KVDEK------------RKKREVP 209 (284)
T ss_pred --Hc--C-CChHHH----hhhcchhHHHHH----H---HHHHHHHHHH--------HHHHH------------hcccccc
Confidence 11 1 011101 001111110000 0 1111111111 11111 1123789
Q ss_pred CCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHHHHHHHhcCcc
Q 037121 278 EDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLIHQFCADNGIS 349 (683)
Q Consensus 278 ~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 349 (683)
+.++|.|+.++|++||+.|+|-||+|.-|.+++..-....|+++.+++...++||++|+..|..|...|++.
T Consensus 210 d~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~ 281 (284)
T KOG4642|consen 210 DYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWA 281 (284)
T ss_pred chhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999986678999999999999999999999999999999885
No 46
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=6.8e-07 Score=99.88 Aligned_cols=217 Identities=18% Similarity=0.180 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC-CCHHHHHHHHHHHHhhccCCch
Q 037121 375 MKLMSRFLARRLFF-GTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS-PDQCVQENAVAALLKLSKHTSG 452 (683)
Q Consensus 375 ~~~~i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~q~~A~~aL~nLs~~~~~ 452 (683)
.+..++.|+..|+. .+.+++..|+++|.+++.--|.....+++.++||.|+.-|.. ...++.|+++.+|..+|....
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~- 287 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP- 287 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc-
Confidence 45688999999965 479999999999999999889999999999999999886654 889999999999999996543
Q ss_pred hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC--chhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHc
Q 037121 453 KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSV--KGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGL 530 (683)
Q Consensus 453 r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 530 (683)
..|.++|++...+.+|+-- +..+++.|.++..|+|.. .+.-..++ .++|.|..+|...+....+.++.++..+
T Consensus 288 -~AiL~AG~l~a~LsylDFF-Si~aQR~AlaiaaN~Cksi~sd~f~~v~---ealPlL~~lLs~~D~k~ies~~ic~~ri 362 (1051)
T KOG0168|consen 288 -KAILQAGALSAVLSYLDFF-SIHAQRVALAIAANCCKSIRSDEFHFVM---EALPLLTPLLSYQDKKPIESVCICLTRI 362 (1051)
T ss_pred -HHHHhcccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccchHHH---HHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 6788999999999999987 888999999999999873 33344444 4899999999999999999999998888
Q ss_pred ccC---Cc-hhhhHhhcCcHHHHHHHHccCC---ChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhcc
Q 037121 531 LLS---QG-NHQKVLDAGTVPLLADILASSN---RTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQT 597 (683)
Q Consensus 531 s~~---~~-n~~~iv~~g~v~~Lv~lL~~~~---~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~ 597 (683)
+.. .. -...+...|.|....+||.-.+ +..+-.-.+..|..+|+ ++.....+...+....|-.+|..
T Consensus 363 ~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 363 ADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 752 22 3578899999999999983221 33444556666777765 58888888888877777776654
No 47
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.65 E-value=2.2e-08 Score=71.82 Aligned_cols=39 Identities=41% Similarity=0.974 Sum_probs=36.3
Q ss_pred CCCCcccCCCce-eccCcccccHHHHHHHHH-hCCCCCCCC
Q 037121 282 CPISLELMTDPV-TVSTGQTYDRSSIQKWLK-AGNMLCPKT 320 (683)
Q Consensus 282 CpIc~~~m~dPv-~~~cght~~r~cI~~w~~-~~~~~CP~c 320 (683)
||||.+.+.+|+ +++|||+||+.||.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999999 567789987
No 48
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.61 E-value=4.4e-06 Score=100.66 Aligned_cols=216 Identities=17% Similarity=0.071 Sum_probs=139.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIV 457 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~ 457 (683)
.+..|+..|.+.++.+|..|+..|..+. ..++++.|+.+|.+++..++..|+.+|..+....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~------- 683 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL------- 683 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-------
Confidence 5678899999999999999997777653 2457899999999999999999999998774221
Q ss_pred hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHH--------
Q 037121 458 ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFG-------- 529 (683)
Q Consensus 458 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n-------- 529 (683)
...+.+...|.+. +..+|..|+.+|..+.. +....|+..|.+.++.++..|+.+|..
T Consensus 684 --~~~~~L~~~L~~~-d~~VR~~A~~aL~~~~~------------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~ 748 (897)
T PRK13800 684 --PPAPALRDHLGSP-DPVVRAAALDVLRALRA------------GDAALFAAALGDPDHRVRIEAVRALVSVDDVESVA 748 (897)
T ss_pred --CchHHHHHHhcCC-CHHHHHHHHHHHHhhcc------------CCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHH
Confidence 1124555666665 66777777766665531 112334444555555555555555544
Q ss_pred --------------------cccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChH
Q 037121 530 --------------------LLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALP 589 (683)
Q Consensus 530 --------------------Ls~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~ 589 (683)
+... ..+.++.|+.++ .++++.++..|+..|..+...+ ..+.
T Consensus 749 ~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll-~D~d~~VR~aA~~aLg~~g~~~---------~~~~ 810 (897)
T PRK13800 749 GAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALT-GDPDPLVRAAALAALAELGCPP---------DDVA 810 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHh-cCCCHHHHHHHHHHHHhcCCcc---------hhHH
Confidence 3221 112245566666 5555666666666666553321 1123
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHH
Q 037121 590 VIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKIL 658 (683)
Q Consensus 590 ~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l 658 (683)
.++..|.+. ++.++..|+.+|..+.. ...++.|+.++.+.+..+|+.|.+.|..+
T Consensus 811 ~l~~aL~d~-d~~VR~~Aa~aL~~l~~-------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 811 AATAALRAS-AWQVRQGAARALAGAAA-------------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHhcCC-ChHHHHHHHHHHHhccc-------------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 455666655 66677777777654432 12368888999999999999999988775
No 49
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.59 E-value=9.2e-06 Score=97.95 Aligned_cols=228 Identities=20% Similarity=0.144 Sum_probs=154.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccC-------
Q 037121 377 LMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKH------- 449 (683)
Q Consensus 377 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~------- 449 (683)
..++.|+..|...+++++..|+..|..+.... ...+.|...|.++|+.++..|+.+|..+...
T Consensus 652 ~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~ 721 (897)
T PRK13800 652 GFGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAA 721 (897)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHH
Confidence 35688889998889999999988887764311 1123455555555555555555555443210
Q ss_pred ----Cch--hhHHh----hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHH
Q 037121 450 ----TSG--KKVIV----ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCG 519 (683)
Q Consensus 450 ----~~~--r~~i~----~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~ 519 (683)
++. |...+ ..+..+.|...+.++ +.++|..++.+|..+.... ...++.|..+++++++.+
T Consensus 722 ~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~-~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~V 791 (897)
T PRK13800 722 ALGDPDHRVRIEAVRALVSVDDVESVAGAATDE-NREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLV 791 (897)
T ss_pred HhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCC-CHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHH
Confidence 000 10000 112234455566666 6677777777776664321 335789999999999999
Q ss_pred HHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCC
Q 037121 520 KKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLT 599 (683)
Q Consensus 520 ~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~ 599 (683)
+..|+.+|.++.... ..++.++..| .+++..++..|+..|..+.. ...++.|+.+|.+.
T Consensus 792 R~aA~~aLg~~g~~~---------~~~~~l~~aL-~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~- 850 (897)
T PRK13800 792 RAAALAALAELGCPP---------DDVAAATAAL-RASAWQVRQGAARALAGAAA----------DVAVPALVEALTDP- 850 (897)
T ss_pred HHHHHHHHHhcCCcc---------hhHHHHHHHh-cCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCC-
Confidence 999999999884321 1235678888 77788999999999987653 23468999999887
Q ss_pred ChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHH
Q 037121 600 SRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKI 657 (683)
Q Consensus 600 s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~ 657 (683)
+..++..|+.+|..+- .. .. ..+.|...+.+.+..+|+.|..+|..
T Consensus 851 ~~~VR~~A~~aL~~~~-~~-~~----------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 851 HLDVRKAAVLALTRWP-GD-PA----------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred CHHHHHHHHHHHhccC-CC-HH----------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 8999999999998762 11 22 25566678899999999999988863
No 50
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.59 E-value=4.4e-06 Score=90.42 Aligned_cols=237 Identities=14% Similarity=0.118 Sum_probs=176.1
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC--CCHHHHHHHHHHHHhhccCCchh
Q 037121 377 LMSRFLARRLFFG-TNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS--PDQCVQENAVAALLKLSKHTSGK 453 (683)
Q Consensus 377 ~~i~~Lv~~L~s~-~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~q~~A~~aL~nLs~~~~~r 453 (683)
.....|...|+++ +.+.+.-++..+..+.+ .+.+|..+.+.++++.|+.+|+. .+..++-+++-++.-||.+++..
T Consensus 143 ~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~ 221 (429)
T cd00256 143 YYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAA 221 (429)
T ss_pred HHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHH
Confidence 3556677777664 46677788888888887 57889999999999999999976 36789999999999999998876
Q ss_pred hHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc-------hhHHHhhccCCChHHHHHhhhc---CCHHHHHHH
Q 037121 454 KVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVK-------GYRKLIGETPKAIPALVKLIEE---GTDCGKKNA 523 (683)
Q Consensus 454 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-------~~~~~i~~~~g~i~~Lv~lL~~---~~~~~~~~A 523 (683)
+.+.+.|.|+.++.+++...-..+.+-+.++|.||.... .....+.. .| ++.++..|.. .|++..++.
T Consensus 222 ~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~-~~-l~~~l~~L~~rk~~DedL~edl 299 (429)
T cd00256 222 EVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQ-CK-VLKTLQSLEQRKYDDEDLTDDL 299 (429)
T ss_pred HhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHH-cC-hHHHHHHHhcCCCCcHHHHHHH
Confidence 777788999999999998756778899999999998743 12333333 34 4555665554 244333322
Q ss_pred HHH-------HHHcccCC------------------------chhhhHhhcC--cHHHHHHHHccCCChhHHHHHHHHHH
Q 037121 524 VVA-------IFGLLLSQ------------------------GNHQKVLDAG--TVPLLADILASSNRTELITDSLAVLA 570 (683)
Q Consensus 524 ~~a-------L~nLs~~~------------------------~n~~~iv~~g--~v~~Lv~lL~~~~~~~~~~~al~iL~ 570 (683)
-.. +..+++.+ +|..++-+.+ ++..|+++|..+.++.+..-|+.=++
T Consensus 300 ~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dig 379 (429)
T cd00256 300 KFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIG 379 (429)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHH
Confidence 221 22233211 3455555543 57889999966677888778888888
Q ss_pred HhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcC
Q 037121 571 NLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSN 617 (683)
Q Consensus 571 nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~ 617 (683)
.++. .|.||..+-+-|+=..++++|.+. ++.++.+|+.++..|..+
T Consensus 380 e~vr~~P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 380 EYVRHYPRGKDVVEQLGGKQRVMRLLNHE-DPNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHHHHCccHHHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence 8886 789999999999888899999998 999999999988766543
No 51
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.59 E-value=1.3e-08 Score=77.72 Aligned_cols=59 Identities=22% Similarity=0.410 Sum_probs=33.9
Q ss_pred CCccCCCCcccCCCcee-ccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHH
Q 037121 278 EDFRCPISLELMTDPVT-VSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLI 339 (683)
Q Consensus 278 ~~f~CpIc~~~m~dPv~-~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i 339 (683)
+-++|++|.++|+.||. ..|.|.||+.||.+.+. ..||+|..+....++.-|..+.++|
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S-SS----HHHHHHH
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHHHHHHHhhhhhhccC
Confidence 35789999999999996 58999999999987554 3599999999888999999998876
No 52
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.57 E-value=3.9e-08 Score=73.76 Aligned_cols=47 Identities=28% Similarity=0.497 Sum_probs=41.1
Q ss_pred CCccCCCCcccCCCceeccCccc-ccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 278 EDFRCPISLELMTDPVTVSTGQT-YDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 278 ~~f~CpIc~~~m~dPv~~~cght-~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
+++.|+||++...++++.+|||. ||..|+.+|+.. ...||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 46789999999999999999999 999999999994 889999998764
No 53
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.57 E-value=2.9e-08 Score=97.32 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=61.1
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHHHHHHHh
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLIHQFCAD 345 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~ 345 (683)
.+..-++|-||.+.++-|++++||||||.-||.+++.. ++.||.|+.......+..+..++..++.|..-
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~ 90 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHARN 90 (391)
T ss_pred cchhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhhc
Confidence 34556899999999999999999999999999999987 89999999988877788888888888777543
No 54
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.54 E-value=6.1e-08 Score=96.19 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=40.9
Q ss_pred CCCccCCCCcccCCCc--------eeccCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 277 PEDFRCPISLELMTDP--------VTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dP--------v~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
.++..||||++.+.++ ++.+|||+||+.||.+|+.. +.+||.||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 4467999999987764 45689999999999999986 789999998765
No 55
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.52 E-value=4e-08 Score=75.20 Aligned_cols=44 Identities=32% Similarity=0.823 Sum_probs=31.4
Q ss_pred CCccCCCCcccCCCceec-cCcccccHHHHHHHHHh-CCCCCCCCC
Q 037121 278 EDFRCPISLELMTDPVTV-STGQTYDRSSIQKWLKA-GNMLCPKTG 321 (683)
Q Consensus 278 ~~f~CpIc~~~m~dPv~~-~cght~~r~cI~~w~~~-~~~~CP~c~ 321 (683)
-.+.|||++..|.+||.- .|||+|++.+|.+|+.. +...||..|
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 368999999999999984 89999999999999943 466899843
No 56
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=9.1e-08 Score=88.14 Aligned_cols=55 Identities=25% Similarity=0.594 Sum_probs=45.9
Q ss_pred CCCCccCCCCcccCCC--ceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCC
Q 037121 276 NPEDFRCPISLELMTD--PVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLP 331 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~d--Pv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~p 331 (683)
...-|.||||++-... ||.+.|||.||+.||...++. ...||+|++.++++.+.+
T Consensus 128 ~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHR 184 (187)
T ss_pred cccccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhee
Confidence 3445999999999854 556789999999999999997 678999999888776644
No 57
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.47 E-value=7.3e-08 Score=70.19 Aligned_cols=40 Identities=40% Similarity=0.808 Sum_probs=34.0
Q ss_pred cCCCCcccCC---CceeccCcccccHHHHHHHHHhCCCCCCCCC
Q 037121 281 RCPISLELMT---DPVTVSTGQTYDRSSIQKWLKAGNMLCPKTG 321 (683)
Q Consensus 281 ~CpIc~~~m~---dPv~~~cght~~r~cI~~w~~~~~~~CP~c~ 321 (683)
.||||++.+. .++.++|||.|+..||.+|+.. +.+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999994 4556799999999999999998 67999995
No 58
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.45 E-value=1e-06 Score=78.07 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=122.0
Q ss_pred hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchh
Q 037121 458 ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNH 537 (683)
Q Consensus 458 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~ 537 (683)
..+.+..||.-.....+.++++...+-|.|.+.++.|-..+.+ ..++..+|+-|...+...++.+...|+|+|.+..|.
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrq-l~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~ 92 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQ-LDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNA 92 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHH-hhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHH
Confidence 4566788888888776899999999999999999888887777 899999999999999999999999999999999999
Q ss_pred hhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHH
Q 037121 538 QKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILL 612 (683)
Q Consensus 538 ~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~ 612 (683)
..+++++++|..+..+ +++...+.-.|+..|..|+. ...-+..+....++..+.++-.+. +...+.-|-..|-
T Consensus 93 ~~I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~-s~~~rnLa~~fl~ 166 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESK-SHDERNLASAFLD 166 (173)
T ss_pred HHHHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 9999999999999999 78888888999999999985 334566666644444444443333 3344444444443
No 59
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.41 E-value=2.7e-07 Score=67.12 Aligned_cols=43 Identities=42% Similarity=0.842 Sum_probs=38.6
Q ss_pred cCCCCcccCCCceecc-CcccccHHHHHHHHHhCCCCCCCCCcc
Q 037121 281 RCPISLELMTDPVTVS-TGQTYDRSSIQKWLKAGNMLCPKTGEK 323 (683)
Q Consensus 281 ~CpIc~~~m~dPv~~~-cght~~r~cI~~w~~~~~~~CP~c~~~ 323 (683)
.|+||++.+.+|+.+. |||.||..|+..|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999998888765 999999999999999878889999864
No 60
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.38 E-value=3.1e-05 Score=88.24 Aligned_cols=258 Identities=16% Similarity=0.131 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhh
Q 037121 375 MKLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKK 454 (683)
Q Consensus 375 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~ 454 (683)
.+..++.+.+.|.+.++.+|.+|+-.+..+.+.+++. +... .++.+..+|.+.|+.++..|+.++..+ .. ..+.
T Consensus 112 ~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~-~~~~ 185 (526)
T PF01602_consen 112 AEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KC-NDDS 185 (526)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HC-THHH
T ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-cc-Ccch
Confidence 3445566777777777788888887777777665542 2222 577788888777788888888777777 11 1111
Q ss_pred HH-hhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccC
Q 037121 455 VI-VESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLS 533 (683)
Q Consensus 455 ~i-~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 533 (683)
.. +-...++.|..++... ++-.+..++.+|..++........- ...++.+..++.+.++.+.-.++.++..+...
T Consensus 186 ~~~~~~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~ 261 (526)
T PF01602_consen 186 YKSLIPKLIRILCQLLSDP-DPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS 261 (526)
T ss_dssp HTTHHHHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred hhhhHHHHHHHhhhccccc-chHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc
Confidence 11 1122333333333344 7777777777777776654433321 34777778887777777777888888777665
Q ss_pred CchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHH
Q 037121 534 QGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLS 613 (683)
Q Consensus 534 ~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~ 613 (683)
.. .-..+++.|+.+| .++++.++..++..|..++... . ..+. .....+..+...++...|..++.+|..
T Consensus 262 ~~-----~~~~~~~~L~~lL-~s~~~nvr~~~L~~L~~l~~~~--~-~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~ 330 (526)
T PF01602_consen 262 PE-----LLQKAINPLIKLL-SSSDPNVRYIALDSLSQLAQSN--P-PAVF--NQSLILFFLLYDDDPSIRKKALDLLYK 330 (526)
T ss_dssp HH-----HHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHHCCHC--H-HHHG--THHHHHHHHHCSSSHHHHHHHHHHHHH
T ss_pred hH-----HHHhhHHHHHHHh-hcccchhehhHHHHHHHhhccc--c-hhhh--hhhhhhheecCCCChhHHHHHHHHHhh
Confidence 44 3345788888888 5777888888888888887643 2 2222 333334455533377788888888888
Q ss_pred HhcCChHHHHHHHhcCCCcHHHHHHhHh-cCCHHHHHHHHHHHHHHHHhh
Q 037121 614 LCSNAREEVTASLAKDPSLMNSLYSLTT-DGTSQARKKARSLIKILHKFI 662 (683)
Q Consensus 614 L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-~g~~~~k~~A~~lL~~l~~~~ 662 (683)
++.. ..+.. +++.|...+. .+++..++.+...+..+....
T Consensus 331 l~~~--~n~~~-------Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 331 LANE--SNVKE-------ILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp H--H--HHHHH-------HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred cccc--cchhh-------HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 8864 33322 2556777773 447778888777777665443
No 61
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.6e-05 Score=89.35 Aligned_cols=55 Identities=16% Similarity=0.347 Sum_probs=49.8
Q ss_pred CCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCC
Q 037121 277 PEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLP 331 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~p 331 (683)
.+-++||.|..-.+|-|++.|||.||-.||+..+...+..||+|+..|...++.+
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 4568999999999999999999999999999999998999999999987766654
No 62
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=3.3e-07 Score=97.07 Aligned_cols=71 Identities=25% Similarity=0.507 Sum_probs=61.2
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHHHHHHHhcCc
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLIHQFCADNGI 348 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 348 (683)
...+++.||||++.+.+|++++|||+||+.||..++. +...||.|+. . ...+.+|..+.+++..+...+..
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~-~~~~~~n~~l~~~~~~~~~~~~~ 79 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-P-SRNLRPNVLLANLVERLRQLRLS 79 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-c-hhccCccHHHHHHHHHHHhcCCc
Confidence 4567999999999999999999999999999999999 6789999996 2 22777999999999988766543
No 63
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.32 E-value=3.1e-05 Score=88.17 Aligned_cols=255 Identities=18% Similarity=0.198 Sum_probs=160.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhH
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKV 455 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~ 455 (683)
.+.+..+.+.|.+.++..+..|++.|.+++. ++.... .++.+.++|.++++.++..|+.++..+....++ .
T Consensus 78 ~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~ 148 (526)
T PF01602_consen 78 ILIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--L 148 (526)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--C
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--H
Confidence 4456677777777777777777777777662 222222 357777777777788888888777777654332 1
Q ss_pred HhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHh-ccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCC
Q 037121 456 IVESGGLKVILKVLKSGLSLEARQIAAATLFYL-TSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ 534 (683)
Q Consensus 456 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~L-s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 534 (683)
+-.. .++.+..+|.+. +..++..|+.++..+ ...+.+...+. ..+..|.+++...++..+..++..|..++...
T Consensus 149 ~~~~-~~~~l~~lL~d~-~~~V~~~a~~~l~~i~~~~~~~~~~~~---~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~ 223 (526)
T PF01602_consen 149 VEDE-LIPKLKQLLSDK-DPSVVSAALSLLSEIKCNDDSYKSLIP---KLIRILCQLLSDPDPWLQIKILRLLRRYAPME 223 (526)
T ss_dssp HHGG-HHHHHHHHTTHS-SHHHHHHHHHHHHHHHCTHHHHTTHHH---HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS
T ss_pred HHHH-HHHHHhhhccCC-cchhHHHHHHHHHHHccCcchhhhhHH---HHHHHhhhcccccchHHHHHHHHHHHhcccCC
Confidence 2222 577777777777 677788888888877 44444333332 35677777777777777777888887777655
Q ss_pred chhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHH
Q 037121 535 GNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSL 614 (683)
Q Consensus 535 ~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L 614 (683)
.....- ..+++.+..++ .+.++.+.-.|+.++..+...+. .-..+++.|.+++.+. ++..+-.++..|..+
T Consensus 224 ~~~~~~--~~~i~~l~~~l-~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l 294 (526)
T PF01602_consen 224 PEDADK--NRIIEPLLNLL-QSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSS-DPNVRYIALDSLSQL 294 (526)
T ss_dssp HHHHHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHH
T ss_pred hhhhhH--HHHHHHHHHHh-hccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcc-cchhehhHHHHHHHh
Confidence 443311 44666777777 55567777777777777776554 2224566777777755 666777777777777
Q ss_pred hcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHH
Q 037121 615 CSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHK 660 (683)
Q Consensus 615 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 660 (683)
+..... .+.. . ...+..+..+.+..+|.+|..+|..+..
T Consensus 295 ~~~~~~----~v~~-~--~~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 295 AQSNPP----AVFN-Q--SLILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp CCHCHH----HHGT-H--HHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred hcccch----hhhh-h--hhhhheecCCCChhHHHHHHHHHhhccc
Confidence 776522 2221 1 2223333336677777777777665543
No 64
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=3.2e-05 Score=80.16 Aligned_cols=186 Identities=23% Similarity=0.271 Sum_probs=149.6
Q ss_pred CCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch-hHHHhhccCCChHH
Q 037121 429 SSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKG-YRKLIGETPKAIPA 507 (683)
Q Consensus 429 ~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~~g~i~~ 507 (683)
.+.+.+-++.|+.-|..+..+=+|...++..|++.+++..++++ +.++|+.|++++...+.+.. ....+.. .|+++.
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E-~~~L~~ 170 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENS-DAELRELAARVIGTAVQNNPKSQEQVIE-LGALSK 170 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHH-cccHHH
Confidence 34678889999999999999889999999999999999999998 89999999999999988654 4555566 899999
Q ss_pred HHHhhhcCC-HHHHHHHHHHHHHcccCCc-hhhhHhhcCcHHHHHHHHccC-CChhHHHHHHHHHHHhhC-ChhhHHHHH
Q 037121 508 LVKLIEEGT-DCGKKNAVVAIFGLLLSQG-NHQKVLDAGTVPLLADILASS-NRTELITDSLAVLANLAE-DIQGTSTIL 583 (683)
Q Consensus 508 Lv~lL~~~~-~~~~~~A~~aL~nLs~~~~-n~~~iv~~g~v~~Lv~lL~~~-~~~~~~~~al~iL~nLa~-~~~~~~~i~ 583 (683)
|+..+.+.+ ..++..|+.|++.|..+.. ....+...++...|...|.+. .+..++..++..+..|.. .......+.
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~ 250 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS 250 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 999997654 4677899999999998765 678888999999999999432 578899999999999975 333344344
Q ss_pred hcCChHHHHHhhccCCChHHHHHHHHHHHHHhcC
Q 037121 584 KTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSN 617 (683)
Q Consensus 584 ~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~ 617 (683)
..+....+..+.... +.+..++|+.+++.+...
T Consensus 251 ~~~f~~~~~~l~~~l-~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 251 SLGFQRVLENLISSL-DFEVNEAALTALLSLLSE 283 (342)
T ss_pred HhhhhHHHHHHhhcc-chhhhHHHHHHHHHHHHH
Confidence 444444555566666 788999999888776654
No 65
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.30 E-value=7e-07 Score=62.57 Aligned_cols=39 Identities=54% Similarity=1.043 Sum_probs=36.2
Q ss_pred CCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCC
Q 037121 282 CPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKT 320 (683)
Q Consensus 282 CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c 320 (683)
|+||++...+|+.++|||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999999667789986
No 66
>PHA02926 zinc finger-like protein; Provisional
Probab=98.27 E-value=5.9e-07 Score=85.94 Aligned_cols=51 Identities=16% Similarity=0.318 Sum_probs=41.2
Q ss_pred CCCCCccCCCCcccCCC---------ceeccCcccccHHHHHHHHHhC-----CCCCCCCCcccC
Q 037121 275 LNPEDFRCPISLELMTD---------PVTVSTGQTYDRSSIQKWLKAG-----NMLCPKTGEKLT 325 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~d---------Pv~~~cght~~r~cI~~w~~~~-----~~~CP~c~~~l~ 325 (683)
...++..|+||++...+ ++..+|+|+||..||.+|.... ...||.||..+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 34568899999998744 4566899999999999999852 356999998765
No 67
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.6e-07 Score=95.32 Aligned_cols=69 Identities=26% Similarity=0.409 Sum_probs=60.2
Q ss_pred CCCCCccCCCCcccCCCceec-cCcccccHHHHHHHHHhCCCCCCCCCcccC-CCCCCCcHHHHHHHHHHH
Q 037121 275 LNPEDFRCPISLELMTDPVTV-STGQTYDRSSIQKWLKAGNMLCPKTGEKLT-NTELLPNTTLKKLIHQFC 343 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~-~cght~~r~cI~~w~~~~~~~CP~c~~~l~-~~~l~pn~~l~~~i~~~~ 343 (683)
.+..+|.||||+++++..+++ .|+|.||+.||.+-+..|+..||.|++.+. ...|.++.....+|.+.-
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 456789999999999999887 599999999999999999999999999975 457888888888887664
No 68
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.27 E-value=6.3e-06 Score=73.13 Aligned_cols=122 Identities=20% Similarity=0.145 Sum_probs=106.4
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhH
Q 037121 377 LMSRFLARRLFF-GTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKV 455 (683)
Q Consensus 377 ~~i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~ 455 (683)
..+..||..... .+.+.+.+....|.+++. +|.|-..+.+..++..++..|...|..+.+.+++.|.|++.+..|.+.
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 356667766644 478899999999999998 689999999999999999999999999999999999999999999999
Q ss_pred HhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch-hHHHhhc
Q 037121 456 IVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKG-YRKLIGE 500 (683)
Q Consensus 456 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~ 500 (683)
|.++++++.++.+++++ .......|+.++..|+.... .+..+..
T Consensus 95 I~ea~g~plii~~lssp-~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSP-PEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHHhcCCceEEeecCCC-hHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 99999999999999998 78888999999999987543 4555544
No 69
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.21 E-value=1.7e-06 Score=88.43 Aligned_cols=52 Identities=21% Similarity=0.396 Sum_probs=41.6
Q ss_pred CCccCCCCccc-CCCce----eccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCC
Q 037121 278 EDFRCPISLEL-MTDPV----TVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTEL 329 (683)
Q Consensus 278 ~~f~CpIc~~~-m~dPv----~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l 329 (683)
++..||+|..- ...|- +.+|||.||++||..+|..|...||.|+.++....+
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~f 58 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNF 58 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhc
Confidence 45789999973 33442 237999999999999998888899999998877663
No 70
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.17 E-value=0.00018 Score=79.37 Aligned_cols=225 Identities=15% Similarity=0.147 Sum_probs=153.1
Q ss_pred hhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch-hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 037121 410 FNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYL 488 (683)
Q Consensus 410 ~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~-r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~L 488 (683)
.++..+.+.-....+..+....|......|+-++.+++..-.. +...-...++.+++.++..+ ...+...+.++|.|+
T Consensus 368 ~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~Nl 446 (678)
T KOG1293|consen 368 SLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICNL 446 (678)
T ss_pred hHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHHH
Confidence 3444455444444454555557888888888888888754333 55555778999999999888 778889999999999
Q ss_pred ccC-chhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhH-hhcCcH-HHHHHHHccCCChhHHHHH
Q 037121 489 TSV-KGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKV-LDAGTV-PLLADILASSNRTELITDS 565 (683)
Q Consensus 489 s~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i-v~~g~v-~~Lv~lL~~~~~~~~~~~a 565 (683)
... ...+..+.+ .|+|..|.+++.+.+...+..+.|+|+++..+.++..+. ..+.+- ..++.+. ++++..+++.|
T Consensus 447 Vmefs~~kskfl~-~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~-nd~d~~Vqeq~ 524 (678)
T KOG1293|consen 447 VMEFSNLKSKFLR-NNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLI-NDPDWAVQEQC 524 (678)
T ss_pred HhhcccHHHHHHH-cCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHH-hCCCHHHHHHH
Confidence 874 567888888 999999999999999999999999999999988764332 222333 3455555 89999999999
Q ss_pred HHHHHHhh-CChhhHHHHHhcCC--hHHHHHhhcc-CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHh
Q 037121 566 LAVLANLA-EDIQGTSTILKTSA--LPVIIGLLQT-LTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTT 641 (683)
Q Consensus 566 l~iL~nLa-~~~~~~~~i~~~g~--i~~Lv~lL~~-~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~ 641 (683)
+.+|+||. ...+...-+++.-. +..+.-.++- +.+|..-+.-...+ ++.....-+ .+..+ .|.++.|+....
T Consensus 525 fqllRNl~c~~~~svdfll~~~~~~ld~i~l~lk~a~~~pi~ie~~~~~~-~l~~~~d~~-~~~am--~~~fk~lvl~~e 600 (678)
T KOG1293|consen 525 FQLLRNLTCNSRKSVDFLLEKFKDVLDKIDLQLKIAIGSPILIEFLAKKM-RLLNPLDTQ-QKKAM--EGIFKILVLLAE 600 (678)
T ss_pred HHHHHHhhcCcHHHHHHHHHhhhHHHHHHHHHHhhccCCceehhhHHHHH-HhccchhHH-HHHHH--HHHHHHHHHHHH
Confidence 99999995 55666666665543 3333333322 11454444444443 333332122 22232 466777776544
No 71
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=6.6e-05 Score=87.60 Aligned_cols=254 Identities=16% Similarity=0.183 Sum_probs=168.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch-hhHH
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KKVI 456 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~-r~~i 456 (683)
..+.+-..|.+.+|..+..|+-+|..++.+..+.-.... ..+++..+..|.++++.+|-.|+.+++.++.+=.- -.+-
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 345666778899999999999999999886544322211 35778888899999999999999999999987433 3444
Q ss_pred hhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHH-----hhhcCCHHHHHHHHHHHHHcc
Q 037121 457 VESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVK-----LIEEGTDCGKKNAVVAIFGLL 531 (683)
Q Consensus 457 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~-----lL~~~~~~~~~~A~~aL~nLs 531 (683)
...-.++.|+..+.+..+..+...|+++|.|++..-.+ ..+ .++++.|++ ++.++++.+++.++++|...+
T Consensus 428 ~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~-~~l---~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA 503 (1075)
T KOG2171|consen 428 HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK-SIL---EPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVA 503 (1075)
T ss_pred HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH-HHH---HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 45667889999999876889999999999999875332 222 235555555 556788999999999999998
Q ss_pred cCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhh--CChhhHHHHHhcC--ChHHHHHhhccC--CChHHHH
Q 037121 532 LSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA--EDIQGTSTILKTS--ALPVIIGLLQTL--TSRAGKE 605 (683)
Q Consensus 532 ~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa--~~~~~~~~i~~~g--~i~~Lv~lL~~~--~s~~~ke 605 (683)
...+..-.=.-.-.+|.|.+.|.+..+.+.+.....++..++ ...-|++.+...- .+..+..+..+. .+...++
T Consensus 504 ~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~s 583 (1075)
T KOG2171|consen 504 DAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRS 583 (1075)
T ss_pred HHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHH
Confidence 766543222223467778888855444444444444443333 2234555554322 233444432110 1556778
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHh
Q 037121 606 YCVSILLSLCSNAREEVTASLAKDPSLMNSLYSL 639 (683)
Q Consensus 606 ~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~L 639 (683)
+-...-.+||+--+++....+ .-++|+|+.-
T Consensus 584 y~~~~warmc~ilg~~F~p~L---~~Vmppl~~t 614 (1075)
T KOG2171|consen 584 YMIAFWARMCRILGDDFAPFL---PVVMPPLLKT 614 (1075)
T ss_pred HHHHHHHHHHHHhchhhHhHH---HHHhHHHHHh
Confidence 877777788886556655544 2346666543
No 72
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.15 E-value=1.2e-06 Score=88.77 Aligned_cols=67 Identities=19% Similarity=0.376 Sum_probs=56.5
Q ss_pred CCCCCccCCCCcccCCCceec-cCcccccHHHHHHHHHhCCCCCCCCCcccCCC----CCCCcHHHHHHHHHH
Q 037121 275 LNPEDFRCPISLELMTDPVTV-STGQTYDRSSIQKWLKAGNMLCPKTGEKLTNT----ELLPNTTLKKLIHQF 342 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~-~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~----~l~pn~~l~~~i~~~ 342 (683)
++.....|++|..+|.|+.++ -|-||||++||.+++.. ..+||.|+..+... .+.++..|+.++.++
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 567789999999999999976 59999999999999999 88999998876544 466777888777543
No 73
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.15 E-value=9e-05 Score=78.20 Aligned_cols=259 Identities=18% Similarity=0.177 Sum_probs=181.5
Q ss_pred HHHHHHHHhcCCCHHH--HHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC-CCHHHHHHHHHHHHhhccCCch-h
Q 037121 378 MSRFLARRLFFGTNEE--KNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS-PDQCVQENAVAALLKLSKHTSG-K 453 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~--~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~q~~A~~aL~nLs~~~~~-r 453 (683)
....|+..+.+.+.+. +.++++.|..+.. .+|+..++.-| ...++.+-+. ..++.+...+.+|.++-++++. +
T Consensus 181 ~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~ 257 (832)
T KOG3678|consen 181 GLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETC 257 (832)
T ss_pred hHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHH
Confidence 4577888888887665 7788887776654 47888888777 4555554443 5678888899999999998766 8
Q ss_pred hHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC--chhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcc
Q 037121 454 KVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSV--KGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLL 531 (683)
Q Consensus 454 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 531 (683)
..+++.|+++.++-..+.. ++.....++-+|.|++.. .+.+..|.+ ..+-..|..+..+.+.-.+-.|+.+.+.|+
T Consensus 258 ~~Lvaa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmve-Kr~~EWLF~LA~skDel~R~~AClAV~vla 335 (832)
T KOG3678|consen 258 QRLVAAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVE-KRAAEWLFPLAFSKDELLRLHACLAVAVLA 335 (832)
T ss_pred HHHHhhcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHH-hhhhhhhhhhhcchHHHHHHHHHHHHhhhh
Confidence 8999999999999888887 788999999999998874 356778887 778888998888888888889999999999
Q ss_pred cCCchhhhHhhcCc---HHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcC-ChHHHHHhhccCCChHHHHHH
Q 037121 532 LSQGNHQKVLDAGT---VPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTS-ALPVIIGLLQTLTSRAGKEYC 607 (683)
Q Consensus 532 ~~~~n~~~iv~~g~---v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g-~i~~Lv~lL~~~~s~~~ke~A 607 (683)
++.+.-..+.+.|- |++|+..+ +-......+ ...+-.... -+..|+-+|++. +....+
T Consensus 336 t~KE~E~~VrkS~TlaLVEPlva~~---DP~~FARD~------------hd~aQG~~~d~LqRLvPlLdS~---R~EAq~ 397 (832)
T KOG3678|consen 336 TNKEVEREVRKSGTLALVEPLVASL---DPGRFARDA------------HDYAQGRGPDDLQRLVPLLDSN---RLEAQC 397 (832)
T ss_pred hhhhhhHHHhhccchhhhhhhhhcc---Ccchhhhhh------------hhhhccCChHHHHHhhhhhhcc---hhhhhh
Confidence 99887777777764 44555544 111221111 011111111 267788888743 444455
Q ss_pred HHHHHHHhcCCh---HHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHH
Q 037121 608 VSILLSLCSNAR---EEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHK 660 (683)
Q Consensus 608 ~~~L~~L~~~~~---~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 660 (683)
+++ ..||.... .+-...+..+-|.|..|-++..+.+....+-|..+|..+.+
T Consensus 398 i~A-F~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 398 IGA-FYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred hHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 555 35554321 11111233347889999999887666666679999998875
No 74
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.6e-06 Score=92.78 Aligned_cols=72 Identities=28% Similarity=0.461 Sum_probs=57.3
Q ss_pred CCCccCCCCcccCCCceeccCcccccHHHHHHHHHhC----CCCCCCCCcccCCCCCCCcH----HHHHHHHHHHHhcCc
Q 037121 277 PEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAG----NMLCPKTGEKLTNTELLPNT----TLKKLIHQFCADNGI 348 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~----~~~CP~c~~~l~~~~l~pn~----~l~~~i~~~~~~~~~ 348 (683)
+.+..||||++...-|+.+.|||.||..||-++|..+ ...||.|+..+..+++.|-+ .-+.-+..++..||+
T Consensus 184 ~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng~ 263 (513)
T KOG2164|consen 184 STDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNGI 263 (513)
T ss_pred CcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccCC
Confidence 3489999999999999999999999999999999873 56899999988776554432 233346777777874
No 75
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.11 E-value=2.3e-06 Score=62.21 Aligned_cols=41 Identities=22% Similarity=0.448 Sum_probs=35.2
Q ss_pred cCCCCcccC---CCceeccCcccccHHHHHHHHHhCCCCCCCCCc
Q 037121 281 RCPISLELM---TDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGE 322 (683)
Q Consensus 281 ~CpIc~~~m---~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~ 322 (683)
.|++|.+.+ ..|++++|||+||..|+.++. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 489999988 457788999999999999998 44779999974
No 76
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.6e-06 Score=85.11 Aligned_cols=52 Identities=23% Similarity=0.428 Sum_probs=45.6
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHH-HHHhCCCCCCCCCcccCC
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQK-WLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~-w~~~~~~~CP~c~~~l~~ 326 (683)
.+..+|.|+||.+.+.+|+.++|||.||..||-. |-......||.||+....
T Consensus 211 ip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 211 IPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 3467999999999999999999999999999999 888756679999986543
No 77
>PF05536 Neurochondrin: Neurochondrin
Probab=98.07 E-value=9.4e-05 Score=83.66 Aligned_cols=153 Identities=23% Similarity=0.300 Sum_probs=123.3
Q ss_pred cHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch----hHHHhhccCCChHHHHHhhhcC-------CHHHHHHHHHHHHH
Q 037121 461 GLKVILKVLKSGLSLEARQIAAATLFYLTSVKG----YRKLIGETPKAIPALVKLIEEG-------TDCGKKNAVVAIFG 529 (683)
Q Consensus 461 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~----~~~~i~~~~g~i~~Lv~lL~~~-------~~~~~~~A~~aL~n 529 (683)
.++..+.+|+.. +.+-|-.+...+.++...++ .++.|.. .=+.+.|-.+|+++ ....+.-|+..|..
T Consensus 6 ~l~~c~~lL~~~-~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~-aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 6 SLEKCLSLLKSA-DDTERFAGLLLVTKLLDADDEDSQTRRRVFE-AIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred HHHHHHHHhccC-CcHHHHHHHHHHHHcCCCchhhHHHHHHHHH-hcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 467778888888 56777778888888887654 2445666 55578888899873 24567789999999
Q ss_pred cccCCchh--hhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHH
Q 037121 530 LLLSQGNH--QKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYC 607 (683)
Q Consensus 530 Ls~~~~n~--~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A 607 (683)
+|..++.. .+++ +-||.|++.+....+..+...|+.+|..++++++|+..+++.|+++.|++++.+ .+...+.|
T Consensus 84 f~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~A 159 (543)
T PF05536_consen 84 FCRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN--QSFQMEIA 159 (543)
T ss_pred HcCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHH
Confidence 99977653 5555 579999999944444499999999999999999999999999999999998887 57889999
Q ss_pred HHHHHHHhcCCh
Q 037121 608 VSILLSLCSNAR 619 (683)
Q Consensus 608 ~~~L~~L~~~~~ 619 (683)
+.+|.+++...+
T Consensus 160 l~lL~~Lls~~~ 171 (543)
T PF05536_consen 160 LNLLLNLLSRLG 171 (543)
T ss_pred HHHHHHHHHhcc
Confidence 999999988754
No 78
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.00053 Score=80.27 Aligned_cols=281 Identities=15% Similarity=0.194 Sum_probs=173.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHh-cCChHHHHhhc----CCCCHHHHHHHHHHHHhhccCCch
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVE-SGAIPPLLNLL----SSPDQCVQENAVAALLKLSKHTSG 452 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL----~s~d~~~q~~A~~aL~nLs~~~~~ 452 (683)
....+.+-+..++..++..|++++..++...+.++..... ...+|.++..+ ..+|.+.-..++.+|-.|.....-
T Consensus 160 l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk 239 (1075)
T KOG2171|consen 160 LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK 239 (1075)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH
Confidence 4455556666665558999999998888766544443333 24667666655 446776666777777777654432
Q ss_pred --hhHHhhcCcHHHHHHHHcC-CCCHHHHHHHHHHHHHhccCchhHH---------------------------------
Q 037121 453 --KKVIVESGGLKVILKVLKS-GLSLEARQIAAATLFYLTSVKGYRK--------------------------------- 496 (683)
Q Consensus 453 --r~~i~~~g~i~~Lv~lL~~-~~~~e~~~~Aa~~L~~Ls~~~~~~~--------------------------------- 496 (683)
+..+. .+|...+.+..+ ..+..+|..|..+|..++.+.....
T Consensus 240 ~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ 317 (1075)
T KOG2171|consen 240 LLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDL 317 (1075)
T ss_pred HHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccc
Confidence 22221 234444444444 2345667777766666654411000
Q ss_pred ---------------------HhhccCCChHHHH----HhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhc---CcHHH
Q 037121 497 ---------------------LIGETPKAIPALV----KLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDA---GTVPL 548 (683)
Q Consensus 497 ---------------------~i~~~~g~i~~Lv----~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~---g~v~~ 548 (683)
.++. .-++|.++ .++.+.+..-++.|+.+|.-++.. +...+.. .+++.
T Consensus 318 ded~~~~~~~~A~~~lDrlA~~L~g-~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EG---c~~~m~~~l~~Il~~ 393 (1075)
T KOG2171|consen 318 DEDDEETPYRAAEQALDRLALHLGG-KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEG---CSDVMIGNLPKILPI 393 (1075)
T ss_pred ccccccCcHHHHHHHHHHHHhcCCh-hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHH
Confidence 0000 11233333 344555666666666666666543 2222222 34555
Q ss_pred HHHHHccCCChhHHHHHHHHHHHhhCC--hhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHH
Q 037121 549 LADILASSNRTELITDSLAVLANLAED--IQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASL 626 (683)
Q Consensus 549 Lv~lL~~~~~~~~~~~al~iL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l 626 (683)
.++.| .++++.++-.|+.+++.++.+ ++. +.-...-.++.|+..+.+...++++-+|+.+|.|+............
T Consensus 394 Vl~~l-~DphprVr~AA~naigQ~stdl~p~i-qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pY 471 (1075)
T KOG2171|consen 394 VLNGL-NDPHPRVRYAALNAIGQMSTDLQPEI-QKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPY 471 (1075)
T ss_pred HHhhc-CCCCHHHHHHHHHHHHhhhhhhcHHH-HHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 56666 789999999999999999863 332 23333355778888887766889999999999998876554443333
Q ss_pred hcCCCcHH-HHHHhHhcCCHHHHHHHHHHHHHHHHhhhhcCCC
Q 037121 627 AKDPSLMN-SLYSLTTDGTSQARKKARSLIKILHKFIETCSSG 668 (683)
Q Consensus 627 ~~~~g~i~-~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~~~~~~ 668 (683)
. .+++. .|..|.+++++.+|+.|...|.-.....+..+.+
T Consensus 472 L--d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~p 512 (1075)
T KOG2171|consen 472 L--DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIP 512 (1075)
T ss_pred H--HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHh
Confidence 3 45666 6777888999999999999888777665544433
No 79
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.00092 Score=67.75 Aligned_cols=271 Identities=17% Similarity=0.149 Sum_probs=177.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHh-cCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHh
Q 037121 379 SRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVE-SGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIV 457 (683)
Q Consensus 379 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~ 457 (683)
...++..|.+.++.++..|+..+-.++.. ..+..... ...++.+.+++...++ -+.|+++|.|++.++.-++.++
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 34678889999999999999887777654 23333332 3567889999987666 7789999999999999999888
Q ss_pred hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhcc-----CCChHHHHHhhhcCC--H-HHHHHHHHHHHH
Q 037121 458 ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGET-----PKAIPALVKLIEEGT--D-CGKKNAVVAIFG 529 (683)
Q Consensus 458 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-----~g~i~~Lv~lL~~~~--~-~~~~~A~~aL~n 529 (683)
.. .+..+++++.+. ....-...+.+|.||+..++....+... ..++.-|+......+ . .-...-+..+.|
T Consensus 81 ~~-~~k~l~~~~~~p-~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDP-QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HH-HHHHHHHHhcCc-ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 77 888888888887 4455667888999999988765554431 134555544443322 1 234456777889
Q ss_pred cccCCchhhhHhhcCcHHH--HHHHHccCCChhHH-HHHHHHHHHhhCChhhHHHHHhcCC--hHHHH------------
Q 037121 530 LLLSQGNHQKVLDAGTVPL--LADILASSNRTELI-TDSLAVLANLAEDIQGTSTILKTSA--LPVII------------ 592 (683)
Q Consensus 530 Ls~~~~n~~~iv~~g~v~~--Lv~lL~~~~~~~~~-~~al~iL~nLa~~~~~~~~i~~~g~--i~~Lv------------ 592 (683)
|+....++..+.....++. |+.+ .+.+..++ .-.+++|.|.|........++..+. +|.|+
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~f--t~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEE 236 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPF--TSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEE 236 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcc--cccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHH
Confidence 9998888877776653332 2222 12222222 2366777887765555555544221 33332
Q ss_pred ---------HhhccC----CChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcC-CHHHHHHHHHHHHHH
Q 037121 593 ---------GLLQTL----TSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDG-TSQARKKARSLIKIL 658 (683)
Q Consensus 593 ---------~lL~~~----~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g-~~~~k~~A~~lL~~l 658 (683)
+++... +++..+..-+.+|..||.. ..-++.+.. .|+.|.+.++=... ++.+++..-.+.+++
T Consensus 237 dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT--~~GRe~lR~-kgvYpilRElhk~e~ded~~~ace~vvq~L 313 (353)
T KOG2973|consen 237 DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT--RAGREVLRS-KGVYPILRELHKWEEDEDIREACEQVVQML 313 (353)
T ss_pred HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh--hHhHHHHHh-cCchHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 333311 2567888889999999986 344556655 88888888876655 445555555567776
Q ss_pred HH
Q 037121 659 HK 660 (683)
Q Consensus 659 ~~ 660 (683)
.+
T Consensus 314 v~ 315 (353)
T KOG2973|consen 314 VR 315 (353)
T ss_pred Hh
Confidence 66
No 80
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.03 E-value=0.0003 Score=74.07 Aligned_cols=234 Identities=13% Similarity=0.100 Sum_probs=173.8
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC--CCHHHHHHHHHHHHhhccCCchhhHH
Q 037121 380 RFLARRLFF-GTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS--PDQCVQENAVAALLKLSKHTSGKKVI 456 (683)
Q Consensus 380 ~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~q~~A~~aL~nLs~~~~~r~~i 456 (683)
..|-..+.+ .+.+...-|++.|..+.+ -+++|..+..+.++..|+..|.+ .+-.+|-+.+-++.-|+.++...+.+
T Consensus 159 ~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~ 237 (442)
T KOG2759|consen 159 GFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKL 237 (442)
T ss_pred HHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHH
Confidence 444445555 466777788889999988 57889999999889999998843 57889999999999999999888888
Q ss_pred hhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch---hH----HHhhccCCChHHHHHhhhcC---CHHHHHHHHH-
Q 037121 457 VESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKG---YR----KLIGETPKAIPALVKLIEEG---TDCGKKNAVV- 525 (683)
Q Consensus 457 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~---~~----~~i~~~~g~i~~Lv~lL~~~---~~~~~~~A~~- 525 (683)
..-+.|+.|+.+++...-..+.+-+.+++.|+..... .+ ..+. .+.++.-++.|... |++...+.-.
T Consensus 238 ~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv--~~~v~k~l~~L~~rkysDEDL~~di~~L 315 (442)
T KOG2759|consen 238 KRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMV--LCKVLKTLQSLEERKYSDEDLVDDIEFL 315 (442)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH--hcCchHHHHHHHhcCCCcHHHHHHHHHH
Confidence 7888999999999987556788889999999987552 22 2222 34555556666542 3332222111
Q ss_pred ------HHHHcccCC------------------------chhhhHhhc--CcHHHHHHHHccCCChhHHHHHHHHHHHhh
Q 037121 526 ------AIFGLLLSQ------------------------GNHQKVLDA--GTVPLLADILASSNRTELITDSLAVLANLA 573 (683)
Q Consensus 526 ------aL~nLs~~~------------------------~n~~~iv~~--g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa 573 (683)
-...|++.+ +|..++-+. .++..|+++|+.+.++.+..-|+.=++...
T Consensus 316 ~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~V 395 (442)
T KOG2759|consen 316 TEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYV 395 (442)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHH
Confidence 122333322 233444443 378889999977777888888888888887
Q ss_pred C-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcC
Q 037121 574 E-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSN 617 (683)
Q Consensus 574 ~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~ 617 (683)
. .|+|+..+.+.||=..++++|.+. ++.+|-+|+.++..|..+
T Consensus 396 r~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 396 RHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHHHHHHHHhh
Confidence 5 899999999999999999999998 999999999988766543
No 81
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=3.6e-05 Score=83.58 Aligned_cols=73 Identities=30% Similarity=0.458 Sum_probs=67.6
Q ss_pred CCCCCccCCCCcccCCCceecc-CcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHHHHHHHhcCc
Q 037121 275 LNPEDFRCPISLELMTDPVTVS-TGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLIHQFCADNGI 348 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~-cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 348 (683)
++|++|..|++..+|+|||+++ +|-+.+|+.|..++-+ ..+.|.-|.+++.++++||..+++-|..|....+-
T Consensus 850 DvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~~ 923 (929)
T COG5113 850 DVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCKGQ 923 (929)
T ss_pred CCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhcccc
Confidence 7899999999999999999985 8999999999999997 78999999999999999999999999999776553
No 82
>PF05536 Neurochondrin: Neurochondrin
Probab=97.96 E-value=0.00044 Score=78.29 Aligned_cols=235 Identities=19% Similarity=0.147 Sum_probs=166.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCch---hhHHHHhcCChHHHHhhcCC-------CCHHHHHHHHHHHHhhc
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIF---NRSCIVESGAIPPLLNLLSS-------PDQCVQENAVAALLKLS 447 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~---~r~~i~~~G~i~~Lv~lL~s-------~d~~~q~~A~~aL~nLs 447 (683)
.+...+..|++.+.+.+..++--+..+.+.++. .++.+.++=+...|-+||.+ +....+.-|+++|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 566778889998878888999999999987653 34457777556888889987 34567888999999999
Q ss_pred cCCch--hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHH
Q 037121 448 KHTSG--KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVV 525 (683)
Q Consensus 448 ~~~~~--r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~ 525 (683)
.+++. -..|+ +-||.|++++.+....++...|..+|..++..++.+..+.. .|+++.|++.+.+ .+...+.|+.
T Consensus 86 ~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~-~g~v~~L~ei~~~-~~~~~E~Al~ 161 (543)
T PF05536_consen 86 RDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE-SGAVPALCEIIPN-QSFQMEIALN 161 (543)
T ss_pred CChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh-cCCHHHHHHHHHh-CcchHHHHHH
Confidence 97766 34454 45999999998873448999999999999999999999999 9999999999887 6678899999
Q ss_pred HHHHcccCCchhhhHhhc----CcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhh--HHHHHhc----CChHHHHHhh
Q 037121 526 AIFGLLLSQGNHQKVLDA----GTVPLLADILASSNRTELITDSLAVLANLAEDIQG--TSTILKT----SALPVIIGLL 595 (683)
Q Consensus 526 aL~nLs~~~~n~~~iv~~----g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~--~~~i~~~----g~i~~Lv~lL 595 (683)
+|.+++...+....--.. .+++.+-..+ ........-.++..|..+-...+. ....... .....+..+|
T Consensus 162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~f-s~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDF-SSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHH-HhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 999998765521111111 2445555555 334455566678888877543211 1111111 2234455577
Q ss_pred ccCCChHHHHHHHHHHHHHhcC
Q 037121 596 QTLTSRAGKEYCVSILLSLCSN 617 (683)
Q Consensus 596 ~~~~s~~~ke~A~~~L~~L~~~ 617 (683)
++...+..|..|+.+...|...
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHHH
Confidence 7765777777777666555543
No 83
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.96 E-value=1e-05 Score=57.80 Aligned_cols=40 Identities=53% Similarity=0.694 Sum_probs=37.9
Q ss_pred CchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhc
Q 037121 408 NIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLS 447 (683)
Q Consensus 408 ~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs 447 (683)
+++++..+.+.|++|+|+.+|++++.+++++|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999997
No 84
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.94 E-value=1.1e-05 Score=79.90 Aligned_cols=67 Identities=21% Similarity=0.424 Sum_probs=57.9
Q ss_pred ccCCCCcccCCCceec-cCcccccHHHHHHHHHhCCCCCCCCCcc-cCCCCCCCcHHHHHHHHHHHHhc
Q 037121 280 FRCPISLELMTDPVTV-STGQTYDRSSIQKWLKAGNMLCPKTGEK-LTNTELLPNTTLKKLIHQFCADN 346 (683)
Q Consensus 280 f~CpIc~~~m~dPv~~-~cght~~r~cI~~w~~~~~~~CP~c~~~-l~~~~l~pn~~l~~~i~~~~~~~ 346 (683)
+.||+|+.++++|+-+ +|||+||..||+..+....+.||.|... +-.+.+.|++..+.-|+.+.+.+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 9999999999999987 7999999999999988878999999763 44557899998888888887643
No 85
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.0015 Score=75.06 Aligned_cols=257 Identities=21% Similarity=0.194 Sum_probs=174.8
Q ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhh
Q 037121 380 RFLARRLF-FGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVE 458 (683)
Q Consensus 380 ~~Lv~~L~-s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~ 458 (683)
+-+...|. .+.+.+|.-|+..+..+.. +.+.-.-+++.|.+-.|+.+|.+ -+..++.++.+|..|+...+--..-++
T Consensus 1774 ~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~ 1851 (2235)
T KOG1789|consen 1774 PLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALE 1851 (2235)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHh
Confidence 33344443 3456677777777666554 55666678888999999999976 467788999999999999888666678
Q ss_pred cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc--hh------------------------------------------
Q 037121 459 SGGLKVILKVLKSGLSLEARQIAAATLFYLTSVK--GY------------------------------------------ 494 (683)
Q Consensus 459 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~------------------------------------------ 494 (683)
.|++..|.+++....+...|..|+..|..|..+. ..
T Consensus 1852 hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~ 1931 (2235)
T KOG1789|consen 1852 HGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNE 1931 (2235)
T ss_pred cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCH
Confidence 8999999999988767888888998888887543 00
Q ss_pred ----------------------------------------------------HHHhhccCC------------ChHHHHH
Q 037121 495 ----------------------------------------------------RKLIGETPK------------AIPALVK 510 (683)
Q Consensus 495 ----------------------------------------------------~~~i~~~~g------------~i~~Lv~ 510 (683)
+..+.. ++ .+..+++
T Consensus 1932 ~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~-P~f~LR~Pk~FL~~LLek~le 2010 (2235)
T KOG1789|consen 1932 VTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVG-PGFNLRHPKLFLTELLEKVLE 2010 (2235)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhC-CCCcccCHHHHHHHHHHHHHH
Confidence 000000 11 1112222
Q ss_pred hhhcCCH--HHHHHHHHHHHHcccCCch-hhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCC
Q 037121 511 LIEEGTD--CGKKNAVVAIFGLLLSQGN-HQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSA 587 (683)
Q Consensus 511 lL~~~~~--~~~~~A~~aL~nLs~~~~n-~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~ 587 (683)
++...++ .....-..|+..|.....+ ..++-..|.+|.++.-+ ...+..+-..|+.+|..|+.+.-...++.+...
T Consensus 2011 lm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am-~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~ 2089 (2235)
T KOG1789|consen 2011 LMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAM-CLQNTSAPRSAIRVLHELSENQFCCDAMAQLPC 2089 (2235)
T ss_pred HhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHH-HhcCCcCcHHHHHHHHHHhhccHHHHHHhcccc
Confidence 2222221 1111222233333333333 45566679999999988 444444557899999999999999999999999
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcC
Q 037121 588 LPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDG 643 (683)
Q Consensus 588 i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g 643 (683)
+..++..|.. .+..---|+.+|-.+......+.+....+ .|++|.|+.|+...
T Consensus 2090 i~~~m~~mkK--~~~~~GLA~EalkR~~~r~~~eLVAQ~LK-~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2090 IDGIMKSMKK--QPSLMGLAAEALKRLMKRNTGELVAQMLK-CGLVPYLLQLLDSS 2142 (2235)
T ss_pred chhhHHHHHh--cchHHHHHHHHHHHHHHHhHHHHHHHHhc-cCcHHHHHHHhccc
Confidence 8888887765 34555588888888877665555555555 89999999998643
No 86
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.90 E-value=0.0018 Score=68.37 Aligned_cols=272 Identities=14% Similarity=0.072 Sum_probs=188.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhh---HHHHhcCChHHHHhhcCC-CCHHHHHHHHHHHHhhccCCchhhH
Q 037121 380 RFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNR---SCIVESGAIPPLLNLLSS-PDQCVQENAVAALLKLSKHTSGKKV 455 (683)
Q Consensus 380 ~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r---~~i~~~G~i~~Lv~lL~s-~d~~~q~~A~~aL~nLs~~~~~r~~ 455 (683)
.+.+..|..+++-....+.+.|..++..+...- ..-...| .|-..+.+ .+.+...-|+.+|--+...++-|-.
T Consensus 117 ~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~---~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~ 193 (442)
T KOG2759|consen 117 LSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKG---FLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYA 193 (442)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHH---HHHHHHhccCCCchHHHHHHHHHHHhcCcchhhe
Confidence 455677888888777778888888876443221 1112222 23334444 6777788899999999999999999
Q ss_pred HhhcCcHHHHHHHH-cCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCC-HHHHHHHHHHHHHcccC
Q 037121 456 IVESGGLKVILKVL-KSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGT-DCGKKNAVVAIFGLLLS 533 (683)
Q Consensus 456 i~~~g~i~~Lv~lL-~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~ 533 (683)
++.++++..++..+ ++--+..++-...-.++-|+.++.....+.. .+.|+.|++++++.. ..+.+-.+.++.|++..
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~-~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKR-FDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999998 4433678888999999999999888877755 899999999998754 46788899999999987
Q ss_pred Cc-------hhhhHhhcCcHHHHHHHHccC--CChhHHHHHHHHHH-------HhhCC----------------------
Q 037121 534 QG-------NHQKVLDAGTVPLLADILASS--NRTELITDSLAVLA-------NLAED---------------------- 575 (683)
Q Consensus 534 ~~-------n~~~iv~~g~v~~Lv~lL~~~--~~~~~~~~al~iL~-------nLa~~---------------------- 575 (683)
.+ .+..++..++.+.+ +.|... .++++.+..-.+-. .|++-
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l-~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~ 351 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTL-QSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEK 351 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHH-HHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccc
Confidence 63 34566666555554 444222 34444433222211 22211
Q ss_pred --hhhHHHHHhcCC--hHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHH
Q 037121 576 --IQGTSTILKTSA--LPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKA 651 (683)
Q Consensus 576 --~~~~~~i~~~g~--i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A 651 (683)
.++...+-+.+. +..|+++|+...+|..-..|+.=+....++-++ ....+.+ .|+=..++.|+.+.++++|-.|
T Consensus 352 FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~-gk~vv~k-~ggKe~vM~Llnh~d~~Vry~A 429 (442)
T KOG2759|consen 352 FWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE-GKAVVEK-YGGKERVMNLLNHEDPEVRYHA 429 (442)
T ss_pred hHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch-HhHHHHH-hchHHHHHHHhcCCCchHHHHH
Confidence 133444444443 677888998874566555566556777776543 3344444 8999999999999999999999
Q ss_pred HHHHHHH
Q 037121 652 RSLIKIL 658 (683)
Q Consensus 652 ~~lL~~l 658 (683)
..+++.|
T Consensus 430 LlavQ~l 436 (442)
T KOG2759|consen 430 LLAVQKL 436 (442)
T ss_pred HHHHHHH
Confidence 9888754
No 87
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.85 E-value=1.5e-05 Score=64.72 Aligned_cols=40 Identities=35% Similarity=0.658 Sum_probs=32.5
Q ss_pred cCCCCcccCCCc-------------eeccCcccccHHHHHHHHHhCCCCCCCCC
Q 037121 281 RCPISLELMTDP-------------VTVSTGQTYDRSSIQKWLKAGNMLCPKTG 321 (683)
Q Consensus 281 ~CpIc~~~m~dP-------------v~~~cght~~r~cI~~w~~~~~~~CP~c~ 321 (683)
.|+||++.+.+| +..+|||.|...||.+|+.. +.+||.||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 399999999444 23479999999999999987 66999996
No 88
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.83 E-value=0.0047 Score=66.57 Aligned_cols=266 Identities=16% Similarity=0.164 Sum_probs=180.1
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC--CCHHHHHHHHHHHHhhccCCchhhHHhhcCcH
Q 037121 385 RLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS--PDQCVQENAVAALLKLSKHTSGKKVIVESGGL 462 (683)
Q Consensus 385 ~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i 462 (683)
.+-+.+.+++..+.+.+|.+.. +...-..+.+.+.--.++.-|.. .+..-+++|++....+....++... +-.|++
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~-~~~~vv 110 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE-IPRGVV 110 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-CCHHHH
Confidence 4445558888888989988887 45666677777755555566654 3455688999999888766544333 367889
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhh
Q 037121 463 KVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLD 542 (683)
Q Consensus 463 ~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~ 542 (683)
..++.+.... +...+..|..+|..++..+. ..+.. .|++..|++.+.++........+.++..+..++..+..+..
T Consensus 111 ralvaiae~~-~D~lr~~cletL~El~l~~P--~lv~~-~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~ 186 (371)
T PF14664_consen 111 RALVAIAEHE-DDRLRRICLETLCELALLNP--ELVAE-CGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRP 186 (371)
T ss_pred HHHHHHHhCC-chHHHHHHHHHHHHHHhhCH--HHHHH-cCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcC
Confidence 9999999987 77899999999999987532 33334 89999999999888777888999999999999988877766
Q ss_pred cCcHHHHHHHHccC------CC---hhHHHHHHHHHHHhhCChhhHHHHHhc--CChHHHHHhhccCCChHHHHHHHHHH
Q 037121 543 AGTVPLLADILASS------NR---TELITDSLAVLANLAEDIQGTSTILKT--SALPVIIGLLQTLTSRAGKEYCVSIL 611 (683)
Q Consensus 543 ~g~v~~Lv~lL~~~------~~---~~~~~~al~iL~nLa~~~~~~~~i~~~--g~i~~Lv~lL~~~~s~~~ke~A~~~L 611 (683)
.--++.++.-+.+. .+ ..+...+..+...|-+. .|--.+... .++..|+..|... .+..++..+.++
T Consensus 187 ~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW-~GLl~l~~~~~~~lksLv~~L~~p-~~~ir~~Ildll 264 (371)
T PF14664_consen 187 GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSW-PGLLYLSMNDFRGLKSLVDSLRLP-NPEIRKAILDLL 264 (371)
T ss_pred CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcC-CceeeeecCCchHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 54566666655222 11 13333333333333333 233333333 3577777777766 666777666666
Q ss_pred HHHhc------------------CCh---------------------------------HHHHHHHhcCCCcHHHHHHhH
Q 037121 612 LSLCS------------------NAR---------------------------------EEVTASLAKDPSLMNSLYSLT 640 (683)
Q Consensus 612 ~~L~~------------------~~~---------------------------------~~~~~~l~~~~g~i~~L~~Ll 640 (683)
..+-. .+. .-....+.+ .|+++.|+++.
T Consensus 265 ~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~-~gL~~~L~~li 343 (371)
T PF14664_consen 265 FDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIE-AGLLEALVELI 343 (371)
T ss_pred HHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHH-cChHHHHHHHH
Confidence 43322 000 002234555 89999999999
Q ss_pred hcC-CHHHHHHHHHHHHHHH
Q 037121 641 TDG-TSQARKKARSLIKILH 659 (683)
Q Consensus 641 ~~g-~~~~k~~A~~lL~~l~ 659 (683)
.+. ++...++|.-+|..+-
T Consensus 344 ~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 344 ESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred hcCCCchHHHHHHHHHHHHH
Confidence 988 8889999999887543
No 89
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.82 E-value=0.0004 Score=76.73 Aligned_cols=154 Identities=14% Similarity=0.136 Sum_probs=123.5
Q ss_pred CCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch-hhHHhhcCcHHHHHH
Q 037121 389 GTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KKVIVESGGLKVILK 467 (683)
Q Consensus 389 ~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~-r~~i~~~g~i~~Lv~ 467 (683)
.+.+....|+-.++.++..-..-|.-+....++.+|+++|..++..++..++++|.|+..+-.+ |..+++.|+|+.+.+
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 3566777888888888876555566666778999999999999999999999999999876555 999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHhccCchhHHHhhcc-CCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCc-hhhhHhhc
Q 037121 468 VLKSGLSLEARQIAAATLFYLTSVKGYRKLIGET-PKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQG-NHQKVLDA 543 (683)
Q Consensus 468 lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~iv~~ 543 (683)
++.+. +...|.++.|+|.++..+.+......-. .=.-..++.+..+++..+++.+...|.||..+.. ....+++.
T Consensus 469 ~~~~~-~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~~ 545 (678)
T KOG1293|consen 469 MLTDP-DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLEK 545 (678)
T ss_pred HhcCC-CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHh
Confidence 99998 8899999999999999987655444331 2234567778888899999999999999987643 33344433
No 90
>PTZ00429 beta-adaptin; Provisional
Probab=97.73 E-value=0.01 Score=69.49 Aligned_cols=251 Identities=13% Similarity=0.103 Sum_probs=170.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhh
Q 037121 379 SRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVE 458 (683)
Q Consensus 379 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~ 458 (683)
+..|-+.|.+.+...+.+|++.+-.....+.+.- .+.+-.++++.++|.+++.-..-.|.+.+.....-..+
T Consensus 34 ~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-- 105 (746)
T PTZ00429 34 GAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVS------YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-- 105 (746)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCch------HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH--
Confidence 4455677788888888888886655544333222 23466778899999999998888888887644332222
Q ss_pred cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhh
Q 037121 459 SGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQ 538 (683)
Q Consensus 459 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 538 (683)
+++.+.+=+.+. ++..|..|..+|.++-... +. .-.++.+.+.+.+.++-+++.|+.++..+-.... .
T Consensus 106 --aINtl~KDl~d~-Np~IRaLALRtLs~Ir~~~-----i~--e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--e 173 (746)
T PTZ00429 106 --AVNTFLQDTTNS-SPVVRALAVRTMMCIRVSS-----VL--EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--Q 173 (746)
T ss_pred --HHHHHHHHcCCC-CHHHHHHHHHHHHcCCcHH-----HH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--c
Confidence 366677777777 8899999999998875421 11 1255667778888899999999999999865433 2
Q ss_pred hHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCC
Q 037121 539 KVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNA 618 (683)
Q Consensus 539 ~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~ 618 (683)
.+.+.|.++.|.++| .+.++.++..|+.+|..+....... .-...+.+..|+..+... +++.+-..+.+|....-.+
T Consensus 174 lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L~e~-~EW~Qi~IL~lL~~y~P~~ 250 (746)
T PTZ00429 174 LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHLPEC-NEWGQLYILELLAAQRPSD 250 (746)
T ss_pred cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHhcCCCC
Confidence 345678899999999 8889999999999999997532212 112234456667766554 7888888777775533222
Q ss_pred hHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHH
Q 037121 619 REEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILH 659 (683)
Q Consensus 619 ~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~ 659 (683)
..+. ..++..+...+++.++.+.-.|..++-.+.
T Consensus 251 ~~e~-------~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 251 KESA-------ETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred cHHH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 2221 123666677777777777766666555443
No 91
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.0056 Score=62.24 Aligned_cols=235 Identities=17% Similarity=0.188 Sum_probs=159.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhH
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKV 455 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~ 455 (683)
...++.+.+.+....+ -..|+.+|.+++. +..-|..+... ++..++.++...-...-...+.+|.||+.++.....
T Consensus 43 ~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ 118 (353)
T KOG2973|consen 43 EALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAA 118 (353)
T ss_pred hhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHH
Confidence 4466777777766554 4567888899987 45556666666 788888888877667777889999999998877333
Q ss_pred Hh---h----cCcHHHHHHHHcCCCCHHH-HHHHHHHHHHhccCchhHHHhhccCCChH--HHHHhhhcCCHHH-HHHHH
Q 037121 456 IV---E----SGGLKVILKVLKSGLSLEA-RQIAAATLFYLTSVKGYRKLIGETPKAIP--ALVKLIEEGTDCG-KKNAV 524 (683)
Q Consensus 456 i~---~----~g~i~~Lv~lL~~~~~~e~-~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~--~Lv~lL~~~~~~~-~~~A~ 524 (683)
+. . .|.+.......+.+.+..+ -...+-++.||+.....+.-... ...+| .|+.+ .+.+..+ +...+
T Consensus 119 ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~-~k~~p~~kll~f-t~~~s~vRr~Gva 196 (353)
T KOG2973|consen 119 LLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLE-PKRFPDQKLLPF-TSEDSQVRRGGVA 196 (353)
T ss_pred HHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcc-hhhhhHhhhhcc-cccchhhhccchH
Confidence 22 2 5666666666666645333 35677888899998887777766 33322 33333 3333344 44788
Q ss_pred HHHHHcccCCchhhhHhhc--CcHHHHHHHHc-------------------------cCCChhHHHHHHHHHHHhhCChh
Q 037121 525 VAIFGLLLSQGNHQKVLDA--GTVPLLADILA-------------------------SSNRTELITDSLAVLANLAEDIQ 577 (683)
Q Consensus 525 ~aL~nLs~~~~n~~~iv~~--g~v~~Lv~lL~-------------------------~~~~~~~~~~al~iL~nLa~~~~ 577 (683)
.+|.|.|.+..+...+... .++|.++-=|. ..+++.++..-+.+|..||....
T Consensus 197 gtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~ 276 (353)
T KOG2973|consen 197 GTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA 276 (353)
T ss_pred HHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH
Confidence 8999999999888877763 23333322121 13578899999999999999999
Q ss_pred hHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 037121 578 GTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCS 616 (683)
Q Consensus 578 ~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~ 616 (683)
||+.+.+.|+-+.+-++=....++..++.|-.+...|..
T Consensus 277 GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 277 GREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 999999877766555543333366677776666544444
No 92
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=3.8e-05 Score=88.85 Aligned_cols=72 Identities=32% Similarity=0.457 Sum_probs=68.0
Q ss_pred CCCCCccCCCCcccCCCceecc-CcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHHHHHHHhcC
Q 037121 275 LNPEDFRCPISLELMTDPVTVS-TGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLIHQFCADNG 347 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~-cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~ 347 (683)
++|++|.-|++..+|.|||++| +|++.||+-|.+++.. ..+.|.||.+|+.+.+.||..++.-|+.|..++.
T Consensus 866 dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~ 938 (943)
T KOG2042|consen 866 DVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEKR 938 (943)
T ss_pred cCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHhh
Confidence 6899999999999999999998 9999999999999997 7889999999999999999999999999987654
No 93
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=2.5e-05 Score=83.45 Aligned_cols=70 Identities=23% Similarity=0.391 Sum_probs=57.7
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCC-----CCCCcHHHHHHHHHHHHh
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNT-----ELLPNTTLKKLIHQFCAD 345 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~-----~l~pn~~l~~~i~~~~~~ 345 (683)
.+..+|.|-+|...+.+||+++|||+||..||.+.... ...||.|+..+... ...+|.....+|..|+..
T Consensus 80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred cccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 56889999999999999999999999999999997764 78899999887643 123466677788877654
No 94
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.69 E-value=0.0036 Score=68.33 Aligned_cols=188 Identities=14% Similarity=0.023 Sum_probs=103.8
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhc
Q 037121 421 IPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGE 500 (683)
Q Consensus 421 i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~ 500 (683)
+..|+..|.+.+..++..++.+|+.+- ..++.+.|+.+|++. ++.++..++.++... .
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~----------~~~a~~~L~~~L~~~-~p~vR~aal~al~~r-----------~ 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG----------GRQAEPWLEPLLAAS-EPPGRAIGLAALGAH-----------R 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC----------chHHHHHHHHHhcCC-ChHHHHHHHHHHHhh-----------c
Confidence 566666676666666666666666432 344556666666655 555555555444431 1
Q ss_pred cCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHH
Q 037121 501 TPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTS 580 (683)
Q Consensus 501 ~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~ 580 (683)
....+.|..+|++.++.++..|+.+|..+-. ...++.|...+ .+.++.++..|+..|..+.. ++...
T Consensus 146 -~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----------~~a~~~L~~al-~d~~~~VR~aA~~al~~lG~-~~A~~ 212 (410)
T TIGR02270 146 -HDPGPALEAALTHEDALVRAAALRALGELPR----------RLSESTLRLYL-RDSDPEVRFAALEAGLLAGS-RLAWG 212 (410)
T ss_pred -cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------ccchHHHHHHH-cCCCHHHHHHHHHHHHHcCC-HhHHH
Confidence 2245566666666666666666666665532 23444455555 55666666666666655432 22221
Q ss_pred HHHh----cC------------------ChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHH
Q 037121 581 TILK----TS------------------ALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYS 638 (683)
Q Consensus 581 ~i~~----~g------------------~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~ 638 (683)
.+.. .| .++.|..+++. +.+++.++.+|..+.. ...++.|+.
T Consensus 213 ~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d---~~vr~~a~~AlG~lg~-------------p~av~~L~~ 276 (410)
T TIGR02270 213 VCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQA---AATRREALRAVGLVGD-------------VEAAPWCLE 276 (410)
T ss_pred HHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcC---hhhHHHHHHHHHHcCC-------------cchHHHHHH
Confidence 1111 11 23333444432 2245555555443332 335777777
Q ss_pred hHhcCCHHHHHHHHHHHHHHHHh
Q 037121 639 LTTDGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 639 Ll~~g~~~~k~~A~~lL~~l~~~ 661 (683)
.+.+. ..++.|.+.++.+...
T Consensus 277 ~l~d~--~~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 277 AMREP--PWARLAGEAFSLITGM 297 (410)
T ss_pred HhcCc--HHHHHHHHHHHHhhCC
Confidence 76643 4999999999988874
No 95
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.00046 Score=76.08 Aligned_cols=274 Identities=16% Similarity=0.148 Sum_probs=174.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHH--HHh--cCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSC--IVE--SGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGK 453 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~--i~~--~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r 453 (683)
.++.|.+.|.+.+...+.-|..+|..++.++.+.-.. .-. .-.+|.++++.++.++.++.+|+.++-..-.... .
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~-q 207 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT-Q 207 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc-H
Confidence 7789999999988888999999999999876432111 100 2468999999999999999999999866554322 2
Q ss_pred hHHhhc-CcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHccc
Q 037121 454 KVIVES-GGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLL 532 (683)
Q Consensus 454 ~~i~~~-g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 532 (683)
..+..- ..++.+..+- ++.++++|.+.+.+|..|......+..=.- .+++...+..-++.+..+...|+.....++.
T Consensus 208 al~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl-~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 208 ALYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHL-DNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred HHHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccch-HHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 223322 2344444444 444899999999999998765443322222 4566677777677778888899999999988
Q ss_pred CCchhhhHhhc---CcHHHHHHHHc---------c-CCC-----------------------------------------
Q 037121 533 SQGNHQKVLDA---GTVPLLADILA---------S-SNR----------------------------------------- 558 (683)
Q Consensus 533 ~~~n~~~iv~~---g~v~~Lv~lL~---------~-~~~----------------------------------------- 558 (683)
.+ .+..++.. ..||.|++=+. . ..+
T Consensus 286 qp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 286 QP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred Cc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 77 44433332 34555544221 1 000
Q ss_pred ----hhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHH
Q 037121 559 ----TELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMN 634 (683)
Q Consensus 559 ----~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~ 634 (683)
=.++...+++|.-|+.. -+..++. -.+|.|-+.|.+. .=.+||.++-+|..++.+...-.+.-+ +.++|
T Consensus 365 ~~~dWNLRkCSAAaLDVLanv--f~~elL~-~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~L---peLip 437 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLANV--FGDELLP-ILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFVPHL---PELIP 437 (885)
T ss_pred ccccccHhhccHHHHHHHHHh--hHHHHHH-HHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhcccch---HHHHH
Confidence 01333333333333320 0111111 1134444455443 445899988888888877544444433 23699
Q ss_pred HHHHhHhcCCHHHHHHHHHHHHHHHHhh
Q 037121 635 SLYSLTTDGTSQARKKARSLIKILHKFI 662 (683)
Q Consensus 635 ~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 662 (683)
.|+.++.+..+-+|.-.+|.|...+.|-
T Consensus 438 ~l~~~L~DKkplVRsITCWTLsRys~wv 465 (885)
T KOG2023|consen 438 FLLSLLDDKKPLVRSITCWTLSRYSKWV 465 (885)
T ss_pred HHHHHhccCccceeeeeeeeHhhhhhhH
Confidence 9999999999999999999998877764
No 96
>PTZ00429 beta-adaptin; Provisional
Probab=97.62 E-value=0.016 Score=67.72 Aligned_cols=258 Identities=14% Similarity=0.029 Sum_probs=172.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIV 457 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~ 457 (683)
.....++.+.+.+.+.++-.--.+.++++.+++.- . -++..|.+=+.++|+.++-.|+++|.++-.. .|+
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela-l----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i~ 138 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA-L----LAVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SVL 138 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH-H----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HHH
Confidence 44566677788888877777767777777655532 1 2356788888899999999999999887531 122
Q ss_pred hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchh
Q 037121 458 ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNH 537 (683)
Q Consensus 458 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~ 537 (683)
.-.+.++.+.+.+. ++-+|..|+-++..+-..+. ..+ ...+.++.|.++|.+.++.++.+|+.+|..+.......
T Consensus 139 -e~l~~~lkk~L~D~-~pYVRKtAalai~Kly~~~p--elv-~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~ 213 (746)
T PTZ00429 139 -EYTLEPLRRAVADP-DPYVRKTAAMGLGKLFHDDM--QLF-YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK 213 (746)
T ss_pred -HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCc--ccc-cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh
Confidence 22456667777777 89999999999999865332 222 23678999999999999999999999999998654432
Q ss_pred hhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcC
Q 037121 538 QKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSN 617 (683)
Q Consensus 538 ~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~ 617 (683)
. -...+.+..|+..| ..-++-.+...+.+|.... |...... ...+..+...|++. ++.+.-.|+.+++++...
T Consensus 214 l-~l~~~~~~~Ll~~L-~e~~EW~Qi~IL~lL~~y~--P~~~~e~--~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 214 I-ESSNEWVNRLVYHL-PECNEWGQLYILELLAAQR--PSDKESA--ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASR 286 (746)
T ss_pred h-HHHHHHHHHHHHHh-hcCChHHHHHHHHHHHhcC--CCCcHHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCc
Confidence 2 23345667777777 4445555556666664432 2111111 13355667778887 888999999999988865
Q ss_pred ChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHH
Q 037121 618 AREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHK 660 (683)
Q Consensus 618 ~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 660 (683)
.+......+.. .+.++|+.| .++++.+|--+..-+..+..
T Consensus 287 ~~~~~~~~~~~--rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~ 326 (746)
T PTZ00429 287 CSQELIERCTV--RVNTALLTL-SRRDAETQYIVCKNIHALLV 326 (746)
T ss_pred CCHHHHHHHHH--HHHHHHHHh-hCCCccHHHHHHHHHHHHHH
Confidence 32333333321 234667776 45677888777765554443
No 97
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.02 Score=60.82 Aligned_cols=219 Identities=18% Similarity=0.190 Sum_probs=161.0
Q ss_pred HHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCC------ch----hhHHhhcCcHHHHH
Q 037121 397 AAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHT------SG----KKVIVESGGLKVIL 466 (683)
Q Consensus 397 a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~------~~----r~~i~~~g~i~~Lv 466 (683)
.+..+..+|. -|+--..+++.++++.|+.+|.++|.++....+..|..|...+ ++ -+.+++.+++..|+
T Consensus 104 ~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 104 IIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 3444555554 5677778899999999999999999999999999999997322 11 23445778899999
Q ss_pred HHHcCC-----CCHHHHHHHHHHHHHhccCch-hHHHhhccCCChHHHHHhhhcCC--HHHHHHHHHHHHHcccCCc-hh
Q 037121 467 KVLKSG-----LSLEARQIAAATLFYLTSVKG-YRKLIGETPKAIPALVKLIEEGT--DCGKKNAVVAIFGLLLSQG-NH 537 (683)
Q Consensus 467 ~lL~~~-----~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~A~~aL~nLs~~~~-n~ 537 (683)
.-+.+- .......++.+++.|+..... ....++. .|.+..|+..+.... ...+..|.-.|.-+..+.+ |+
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~ 261 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR 261 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence 888752 022345677888888877554 5555566 688888888665432 3456677777777666554 88
Q ss_pred hhHhhcCcHHHHHHHHc----cC----CChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHH
Q 037121 538 QKVLDAGTVPLLADILA----SS----NRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVS 609 (683)
Q Consensus 538 ~~iv~~g~v~~Lv~lL~----~~----~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~ 609 (683)
.......+|..+++-+. .+ ...++.+.-..+|+.+...++++..++...|+....-+++. ....+..|++
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~--Kk~sr~Salk 339 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE--KKVSRGSALK 339 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH--HHHhhhhHHH
Confidence 88888899999998873 12 24567777778888777889999999998898877777776 3567888999
Q ss_pred HHHHHhcCCh
Q 037121 610 ILLSLCSNAR 619 (683)
Q Consensus 610 ~L~~L~~~~~ 619 (683)
+|-....+..
T Consensus 340 vLd~am~g~~ 349 (536)
T KOG2734|consen 340 VLDHAMFGPE 349 (536)
T ss_pred HHHHHHhCCC
Confidence 9988777653
No 98
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.0058 Score=68.95 Aligned_cols=239 Identities=16% Similarity=0.152 Sum_probs=177.0
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHhcCc------hhh-----------HHHHhcCChHHHHhhcCCCCHHHHHHH
Q 037121 379 SRFLARRLFFG--TNEEKNKAAYEIRLLAKSNI------FNR-----------SCIVESGAIPPLLNLLSSPDQCVQENA 439 (683)
Q Consensus 379 i~~Lv~~L~s~--~~~~~~~a~~~L~~La~~~~------~~r-----------~~i~~~G~i~~Lv~lL~s~d~~~q~~A 439 (683)
.+.|+.-|... +++....++..+..+..+++ +.+ ..+-..+.|..|+.++...|-.++..|
T Consensus 63 mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~a 142 (970)
T KOG0946|consen 63 MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYA 142 (970)
T ss_pred cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHH
Confidence 36677777554 67777888888887776552 122 123345899999999999999999999
Q ss_pred HHHHHhhccCCch--hhHHh-hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCC
Q 037121 440 VAALLKLSKHTSG--KKVIV-ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGT 516 (683)
Q Consensus 440 ~~aL~nLs~~~~~--r~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~ 516 (683)
+..|-++-....- +..++ ..-+|..++.+|... ...+|-.+.-.|..|+.+.....+++.-..++..|.+++.++.
T Consensus 143 IqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEG 221 (970)
T KOG0946|consen 143 IQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEG 221 (970)
T ss_pred HHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999988655433 55555 778999999999987 6677888888999999988887777765789999999997632
Q ss_pred ----HHHHHHHHHHHHHcccCC-chhhhHhhcCcHHHHHHHHccC--CC----------hhHHHHHHHHHHHhhC--C--
Q 037121 517 ----DCGKKNAVVAIFGLLLSQ-GNHQKVLDAGTVPLLADILASS--NR----------TELITDSLAVLANLAE--D-- 575 (683)
Q Consensus 517 ----~~~~~~A~~aL~nLs~~~-~n~~~iv~~g~v~~Lv~lL~~~--~~----------~~~~~~al~iL~nLa~--~-- 575 (683)
.-+..+++..|.||..+. .|...+.+.+.||.|.++|... .+ ..-...++.++..|.. +
T Consensus 222 g~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~ 301 (970)
T KOG0946|consen 222 GLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTS 301 (970)
T ss_pred CCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcH
Confidence 246889999999999754 5888999999999999888310 11 1233457788888763 2
Q ss_pred ---hhhHHHHHhcCChHHHHHhhcc-CCChHHHHHHHHHHHHHhcCC
Q 037121 576 ---IQGTSTILKTSALPVIIGLLQT-LTSRAGKEYCVSILLSLCSNA 618 (683)
Q Consensus 576 ---~~~~~~i~~~g~i~~Lv~lL~~-~~s~~~ke~A~~~L~~L~~~~ 618 (683)
..+..++.+.+.+..|..++-+ +...++.-.++-++.++.+++
T Consensus 302 ~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn 348 (970)
T KOG0946|consen 302 SITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGN 348 (970)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhc
Confidence 1233566777789999885544 434567777888888888875
No 99
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.48 E-value=6.7e-05 Score=81.34 Aligned_cols=67 Identities=25% Similarity=0.528 Sum_probs=54.7
Q ss_pred CCCCccCCCCcccCCCceec-cCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCC-cHHHHHHHHHHH
Q 037121 276 NPEDFRCPISLELMTDPVTV-STGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLP-NTTLKKLIHQFC 343 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~dPv~~-~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~p-n~~l~~~i~~~~ 343 (683)
+.+++.||+|..++.||+.. .|||.||+.|+..|... +..||.|+..+......+ ....+..+..|-
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLP 86 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhcc
Confidence 67889999999999999994 99999999999999998 899999988876555444 345555555543
No 100
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.46 E-value=0.0019 Score=64.96 Aligned_cols=181 Identities=19% Similarity=0.118 Sum_probs=117.1
Q ss_pred hcCCCHHHHHHHHHHHHHHHhcC--chhhHHHHhc--CChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCc
Q 037121 386 LFFGTNEEKNKAAYEIRLLAKSN--IFNRSCIVES--GAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGG 461 (683)
Q Consensus 386 L~s~~~~~~~~a~~~L~~La~~~--~~~r~~i~~~--G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~ 461 (683)
-.+.+|+.+.+|+..|+.+...+ ......+.+. .+++.+...+.+....+...|+.++..|+..-...-.-.-...
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 36779999999999999999877 3333333332 5667888888887788899999999999866544322223457
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCC-hHHHHHhhhcCCHHHHHHHHHHHHHcccCCc-hhhh
Q 037121 462 LKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKA-IPALVKLIEEGTDCGKKNAVVAIFGLLLSQG-NHQK 539 (683)
Q Consensus 462 i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~-i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~ 539 (683)
++.|++.+.++ +.-+++.|..+|..+...-... ... ++.+.....+.++.++..++..|..+...-+ +...
T Consensus 96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSYS------PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 88888888888 7888999999999998754311 122 5566677788899999999999888876544 2222
Q ss_pred Hhh----cCcHHHHHHHHccCCChhHHHHHHHHHHHhhC
Q 037121 540 VLD----AGTVPLLADILASSNRTELITDSLAVLANLAE 574 (683)
Q Consensus 540 iv~----~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~ 574 (683)
+-. ..+++.+...+ .+.+++++..|-.++..+..
T Consensus 169 l~~~~~~~~l~~~l~~~l-~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLL-SDADPEVREAARECLWALYS 206 (228)
T ss_dssp G--HHHHHHHHHHHHHHH-TSS-HHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHH
Confidence 222 23677788888 88999999999999998864
No 101
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.045 Score=58.29 Aligned_cols=237 Identities=20% Similarity=0.209 Sum_probs=172.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCc---------hhhHHHHhcCChHHHHhhcCC------CCHHHHHHHHHH
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNI---------FNRSCIVESGAIPPLLNLLSS------PDQCVQENAVAA 442 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~---------~~r~~i~~~G~i~~Lv~lL~s------~d~~~q~~A~~a 442 (683)
.++.|+..|...|.++-+..+..++.|+..+. .--..+++.++++.|++-+.. ++.....++++.
T Consensus 126 ~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~v 205 (536)
T KOG2734|consen 126 AVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAV 205 (536)
T ss_pred cHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHH
Confidence 57888999999999999999999999987552 123356777899999887754 234456778889
Q ss_pred HHhhccCCch-hhHHhhcCcHHHHHHHHcC-CCCHHHHHHHHHHHHHhccCch-hHHHhhccCCChHHHHHhhh---c-C
Q 037121 443 LLKLSKHTSG-KKVIVESGGLKVILKVLKS-GLSLEARQIAAATLFYLTSVKG-YRKLIGETPKAIPALVKLIE---E-G 515 (683)
Q Consensus 443 L~nLs~~~~~-r~~i~~~g~i~~Lv~lL~~-~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~---~-~ 515 (683)
+-|+....+. ...+++.|.+.-|+.-+.. +.-..-+..|..+|.-+-.+.. ++...+. -.+|..|+.-+. . +
T Consensus 206 veNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~-l~GiD~lL~~la~yk~~d 284 (536)
T KOG2734|consen 206 VENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGP-LDGIDVLLRQLAVYKRHD 284 (536)
T ss_pred HHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcC-cccHHHHHhhcchhhccC
Confidence 9998876554 7888888887777774443 2233457788888887776554 6777766 778888877553 1 2
Q ss_pred -----CHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChh---hHHHHHhcCC
Q 037121 516 -----TDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQ---GTSTILKTSA 587 (683)
Q Consensus 516 -----~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~---~~~~i~~~g~ 587 (683)
..+..++-...|+.+...+.|+.+++...+++...=++ .. .......++.+|.....+++ +...+++..|
T Consensus 285 P~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lml-r~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lG 362 (536)
T KOG2734|consen 285 PATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLML-RE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILG 362 (536)
T ss_pred CCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHH-HH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHh
Confidence 24677888899999999999999999998888766666 32 44556779999998876555 5567788888
Q ss_pred hHHHHH-hhccC--------CChHHHHHHHHHHHHHhcC
Q 037121 588 LPVIIG-LLQTL--------TSRAGKEYCVSILLSLCSN 617 (683)
Q Consensus 588 i~~Lv~-lL~~~--------~s~~~ke~A~~~L~~L~~~ 617 (683)
+..+.. +++.+ .....-|+.+.+|+++-.+
T Consensus 363 LrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 363 LRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred HHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 888777 55332 1233667788888777664
No 102
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.41 E-value=0.00027 Score=50.43 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=38.1
Q ss_pred ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 037121 575 DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCS 616 (683)
Q Consensus 575 ~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~ 616 (683)
+++++..+.+.|+++.|+++|+++ ++..++.|+++|.|||.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 468899999999999999999988 99999999999999984
No 103
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.018 Score=58.90 Aligned_cols=235 Identities=14% Similarity=0.148 Sum_probs=154.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHH--HhhcCCCCHHHHHHHHHHHHhhccC-Cchhh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPL--LNLLSSPDQCVQENAVAALLKLSKH-TSGKK 454 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~L--v~lL~s~d~~~q~~A~~aL~nLs~~-~~~r~ 454 (683)
..+.++..+...+.++-..|.+.|..++.. +..-..+.+......+ .++-...+.-++...+..+..++.- +..-.
T Consensus 129 ilklildcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesan 207 (524)
T KOG4413|consen 129 ILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESAN 207 (524)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHh
Confidence 557778888888888888889999999873 5555566666555443 2222233444566666777666544 34455
Q ss_pred HHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCC--HHHHHHHHHHHHHc--
Q 037121 455 VIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGT--DCGKKNAVVAIFGL-- 530 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~A~~aL~nL-- 530 (683)
..-..|.+..|..-|+...+.-++.++......|+..+..+..+.+ .|.|..+..++...+ +-.+-.++.....+
T Consensus 208 eckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQ-eglIdlicnIIsGadsdPfekfralmgfgkffg 286 (524)
T KOG4413|consen 208 ECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNIISGADSDPFEKFRALMGFGKFFG 286 (524)
T ss_pred HhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc
Confidence 5667888888888887744667788999999999998888887777 899999999886432 32333343333332
Q ss_pred --ccCCchhhhHhhc--CcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCC--hHHHHH-hhccCCChHH
Q 037121 531 --LLSQGNHQKVLDA--GTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSA--LPVIIG-LLQTLTSRAG 603 (683)
Q Consensus 531 --s~~~~n~~~iv~~--g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~--i~~Lv~-lL~~~~s~~~ 603 (683)
...+-.-..++++ -+|+...+++ ..+++++++.|+..++.|.++.+|.+.+..+|. ...++. ..+.. ...-
T Consensus 287 keaimdvseeaicealiiaidgsfEmi-EmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqn-ahak 364 (524)
T KOG4413|consen 287 KEAIMDVSEEAICEALIIAIDGSFEMI-EMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQN-AHAK 364 (524)
T ss_pred chHHhhcCHHHHHHHHHHHHHhhHHhh-hcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhccc-ccch
Confidence 2222111122222 2344455566 567899999999999999999999999999885 444433 44332 3445
Q ss_pred HHHHHHHHHHHhc
Q 037121 604 KEYCVSILLSLCS 616 (683)
Q Consensus 604 ke~A~~~L~~L~~ 616 (683)
++.++.+|.+++.
T Consensus 365 qeaaihaLaaIag 377 (524)
T KOG4413|consen 365 QEAAIHALAAIAG 377 (524)
T ss_pred HHHHHHHHHHhhc
Confidence 6666666666654
No 104
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.39 E-value=0.0023 Score=67.91 Aligned_cols=173 Identities=16% Similarity=0.164 Sum_probs=138.3
Q ss_pred hHHHHhcCChHHHHhhcCCCCHHH--HHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Q 037121 412 RSCIVESGAIPPLLNLLSSPDQCV--QENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLT 489 (683)
Q Consensus 412 r~~i~~~G~i~~Lv~lL~s~d~~~--q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls 489 (683)
+..+...|++..|+.++.+++.+. +..|...|-.+. ..+|++.++..| +..|+.+-+.....+.....+.+|.++-
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 446777899999999999987665 778888877654 457889998777 6666666665447888899999999998
Q ss_pred cCch-hHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCc--hhhhHhhcCcHHHHHHHHccCCChhHHHHHH
Q 037121 490 SVKG-YRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQG--NHQKVLDAGTVPLLADILASSNRTELITDSL 566 (683)
Q Consensus 490 ~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~--n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al 566 (683)
...+ ....+.. .|++..++-..+..++....+++.+|.|++.+.. .+.++++..+-+-|..+- .+.++-+.-.|+
T Consensus 251 KHSeet~~~Lva-a~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AC 328 (832)
T KOG3678|consen 251 KHSEETCQRLVA-AGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHAC 328 (832)
T ss_pred hhhHHHHHHHHh-hcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHH
Confidence 7554 5566666 8999998888888889999999999999998765 578999998888888886 556777778888
Q ss_pred HHHHHhhCChhhHHHHHhcCCh
Q 037121 567 AVLANLAEDIQGTSTILKTSAL 588 (683)
Q Consensus 567 ~iL~nLa~~~~~~~~i~~~g~i 588 (683)
-+.+.|+.+.+.-..+...|.+
T Consensus 329 lAV~vlat~KE~E~~VrkS~Tl 350 (832)
T KOG3678|consen 329 LAVAVLATNKEVEREVRKSGTL 350 (832)
T ss_pred HHHhhhhhhhhhhHHHhhccch
Confidence 8888898887777777777753
No 105
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.0034 Score=68.29 Aligned_cols=233 Identities=17% Similarity=0.134 Sum_probs=159.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHH-HhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHH
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCI-VESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVI 456 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i-~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i 456 (683)
...-|...|+..+.+++..+=..|..+-.+ ..+.... --...++.++.-+.++++.+|..|+.-+.....-..+-...
T Consensus 209 ~ldGLf~~LsD~s~eVr~~~~t~l~~fL~e-I~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~ 287 (675)
T KOG0212|consen 209 LLDGLFNMLSDSSDEVRTLTDTLLSEFLAE-IRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLL 287 (675)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-HhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhh
Confidence 456677888888888875544433333321 1111112 22357889999999999999999999888877665554444
Q ss_pred hhcCcHHHHHHHHcCCCCHHHHHHHHH---HHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccC
Q 037121 457 VESGGLKVILKVLKSGLSLEARQIAAA---TLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLS 533 (683)
Q Consensus 457 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~---~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 533 (683)
.-.|++..++.++.+...+..++.+.. .|..+......+..+-- ...+..|...+.++....+..++.-+..|-..
T Consensus 288 ~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~-~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~ 366 (675)
T KOG0212|consen 288 YLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDY-GSIIEVLTKYLSDDREETRIAVLNWIILLYHK 366 (675)
T ss_pred hhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccch-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHhh
Confidence 467888888888877533334443332 24444443333333322 34778888888888889999999988888888
Q ss_pred CchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHH
Q 037121 534 QGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLS 613 (683)
Q Consensus 534 ~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~ 613 (683)
..+....-...+.+.|+.-| ++++++++..++.+|+++|.++..... -..+..|+++.... ..-.+..+.-++..
T Consensus 367 ~p~ql~~h~~~if~tLL~tL-sd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~-~~~l~~Rg~lIIRq 441 (675)
T KOG0212|consen 367 APGQLLVHNDSIFLTLLKTL-SDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKED-TKLLEVRGNLIIRQ 441 (675)
T ss_pred CcchhhhhccHHHHHHHHhh-cCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhh-hHHHHhhhhHHHHH
Confidence 88877777778999999999 888999999999999999987655411 12344555655543 44466667777778
Q ss_pred HhcC
Q 037121 614 LCSN 617 (683)
Q Consensus 614 L~~~ 617 (683)
||.-
T Consensus 442 lC~l 445 (675)
T KOG0212|consen 442 LCLL 445 (675)
T ss_pred HHHH
Confidence 8864
No 106
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.31 E-value=0.00088 Score=56.29 Aligned_cols=86 Identities=26% Similarity=0.313 Sum_probs=69.3
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHh
Q 037121 379 SRFLARRL-FFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIV 457 (683)
Q Consensus 379 i~~Lv~~L-~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~ 457 (683)
++.|++.| .+.++.++..|++.|..+- ...++|.|+.++.++|+.++..|+.+|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 46788988 7888999999987777331 1245899999999999999999999999883
Q ss_pred hcCcHHHHHHHHcCCCCHHHHHHHHHHH
Q 037121 458 ESGGLKVILKVLKSGLSLEARQIAAATL 485 (683)
Q Consensus 458 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L 485 (683)
...+++.|.+++.++.+..++..|+.+|
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 3458999999999875667788888876
No 107
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.037 Score=56.72 Aligned_cols=265 Identities=14% Similarity=0.095 Sum_probs=168.2
Q ss_pred CHHHHHHHHHHHHHHHhcCchh----hHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHH
Q 037121 390 TNEEKNKAAYEIRLLAKSNIFN----RSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVI 465 (683)
Q Consensus 390 ~~~~~~~a~~~L~~La~~~~~~----r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~L 465 (683)
+..++.-+++.+..+..+.+.| -..++.+|..+.++..+...|.++...|...+..++..+..-+.|.+....+.+
T Consensus 95 dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdl 174 (524)
T KOG4413|consen 95 DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDL 174 (524)
T ss_pred cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChH
Confidence 3344455555555555544322 123457899999999999999999999999999999988888888776665554
Q ss_pred HHH--HcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhc-CCHHHHHHHHHHHHHcccCCchhhhHhh
Q 037121 466 LKV--LKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEE-GTDCGKKNAVVAIFGLLLSQGNHQKVLD 542 (683)
Q Consensus 466 v~l--L~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~iv~ 542 (683)
-.. --.. +.-+|......+..+.+.......-..++|.+..|..=++. .+.-++.+++...+.|+.....+..+.+
T Consensus 175 hlrnlaakc-ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQ 253 (524)
T KOG4413|consen 175 HLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ 253 (524)
T ss_pred HHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch
Confidence 322 1222 33456666666666655443333333347877777766655 4556677888888899988889999999
Q ss_pred cCcHHHHHHHHcc-CCChhHHHHHHHHHHHhhCChh----hHHHHHhcC--ChHHHHHhhccCCChHHHHHHHHHHHHHh
Q 037121 543 AGTVPLLADILAS-SNRTELITDSLAVLANLAEDIQ----GTSTILKTS--ALPVIIGLLQTLTSRAGKEYCVSILLSLC 615 (683)
Q Consensus 543 ~g~v~~Lv~lL~~-~~~~~~~~~al~iL~nLa~~~~----~~~~i~~~g--~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~ 615 (683)
.|.|+.+.+++.. +.++--.-.++.....+-+... .-+++.+.- +|....++++.. ++...+.|+.++..|.
T Consensus 254 eglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn-DpdaieaAiDalGilG 332 (524)
T KOG4413|consen 254 EGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAIDALGILG 332 (524)
T ss_pred hhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHHHHHHhcc
Confidence 9999999999932 2334444446666555543221 223343332 255566777777 8999999999999998
Q ss_pred cCChHHHHHHHhcCCC--cHHHHHHhHhcCCHHHHHH-HHHHHHHHH
Q 037121 616 SNAREEVTASLAKDPS--LMNSLYSLTTDGTSQARKK-ARSLIKILH 659 (683)
Q Consensus 616 ~~~~~~~~~~l~~~~g--~i~~L~~Ll~~g~~~~k~~-A~~lL~~l~ 659 (683)
++. +-.+.+.+ .| ....|+.-..+.+..++.. |...|..+.
T Consensus 333 Snt--eGadlllk-TgppaaehllarafdqnahakqeaaihaLaaIa 376 (524)
T KOG4413|consen 333 SNT--EGADLLLK-TGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA 376 (524)
T ss_pred CCc--chhHHHhc-cCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence 874 33445554 33 3444444333444444433 334444444
No 108
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=97.27 E-value=0.0017 Score=60.29 Aligned_cols=96 Identities=17% Similarity=0.230 Sum_probs=79.7
Q ss_pred cCCCcchhhhhhHHHHHHHHhhhHHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHcccCcchhhhHHhhHHHHH
Q 037121 43 NNSKFFATQRRNAREAIRQIGILLIFFEEIRDRGLNLSDLVVLCFSELHLTFQKVQFLMEDCTREGAKLWVLMKSQFIAT 122 (683)
Q Consensus 43 ~~~~~~~~~k~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~~Sklyll~~~~~i~~ 122 (683)
..+..+ ..|..+.+|..-++.|.|+++||...+..++.....-++.|...|++++.|++.|+ +. +-|=++....+..
T Consensus 25 ~~~k~~-~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~s-k~-~r~n~~kk~~y~~ 101 (147)
T PF05659_consen 25 ASKKSL-SFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCS-KV-RRWNLYKKPRYAR 101 (147)
T ss_pred HHHHHH-hhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhc-cc-cHHHHHhhHhHHH
Confidence 333444 56778889999999999999999987765666558889999999999999999999 54 5677788899999
Q ss_pred HHHHHHHHHHHHhhc-CCCC
Q 037121 123 QFRVLIRAIATALDV-FPLD 141 (683)
Q Consensus 123 ~f~~~~~~l~~~L~~-lp~~ 141 (683)
+++++..+|.+.++. +|+.
T Consensus 102 Ki~~le~~l~~f~~v~~q~~ 121 (147)
T PF05659_consen 102 KIEELEESLRRFIQVDLQLH 121 (147)
T ss_pred HHHHHHHHHHHHhcchhHHH
Confidence 999999999998884 5543
No 109
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.25 E-value=0.027 Score=62.53 Aligned_cols=235 Identities=19% Similarity=0.168 Sum_probs=161.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCC-----CHHHHHHHHHHHHhhccCC-chhhHHh-hcC
Q 037121 388 FGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSP-----DQCVQENAVAALLKLSKHT-SGKKVIV-ESG 460 (683)
Q Consensus 388 s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~-----d~~~q~~A~~aL~nLs~~~-~~r~~i~-~~g 460 (683)
..++++..+|++.|.|+...++..|..+.+.|..+.++..|+.. +.++.--..++|+-++... ..+..++ +.+
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 34678899999999999999999999999999999999999875 7888888889988877544 4477777 558
Q ss_pred cHHHHHHHHcC--------C--------CCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhc---------C
Q 037121 461 GLKVILKVLKS--------G--------LSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEE---------G 515 (683)
Q Consensus 461 ~i~~Lv~lL~~--------~--------~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~---------~ 515 (683)
++..|+..|.. . ...++...+..++||+......... ....+.++.|+.++.. .
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~ 201 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPP 201 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCc
Confidence 88888887752 1 1345567788999999764433222 1113455555554432 1
Q ss_pred CHHHHHHHHHHHHHcccCCc-h-----------hhhHhhcCcHHHHHHHHcc----CC---ChhHHHHHHHHHHHhhCC-
Q 037121 516 TDCGKKNAVVAIFGLLLSQG-N-----------HQKVLDAGTVPLLADILAS----SN---RTELITDSLAVLANLAED- 575 (683)
Q Consensus 516 ~~~~~~~A~~aL~nLs~~~~-n-----------~~~iv~~g~v~~Lv~lL~~----~~---~~~~~~~al~iL~nLa~~- 575 (683)
.......+..+|.|+=...- . .........+..|+.+|.. .. -.+.....+.+|.+++..
T Consensus 202 l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~ 281 (446)
T PF10165_consen 202 LDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA 281 (446)
T ss_pred chhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc
Confidence 24567788888888832110 0 1112334577888888741 11 135667788888888864
Q ss_pred hhhHHHHHh--------------cC-C-hHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHH
Q 037121 576 IQGTSTILK--------------TS-A-LPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTA 624 (683)
Q Consensus 576 ~~~~~~i~~--------------~g-~-i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~ 624 (683)
...|..+.. .| . -..|++++.+. .+..|..+...|+.||..+....++
T Consensus 282 ~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vaellf~Lc~~d~~~~v~ 345 (446)
T PF10165_consen 282 REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAELLFVLCKEDASRFVK 345 (446)
T ss_pred HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHHHHHHHHhhhHHHHHH
Confidence 555555533 13 3 46899999887 5899999999999999875444333
No 110
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00013 Score=73.04 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=44.6
Q ss_pred ccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCC
Q 037121 280 FRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNT 327 (683)
Q Consensus 280 f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~ 327 (683)
-.|+||+..+.-||.+.|+|.||.-||..-...+..+||+|+.++++.
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 469999999999999999999999999999988888999999998775
No 111
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.24 E-value=0.00059 Score=48.28 Aligned_cols=40 Identities=35% Similarity=0.490 Sum_probs=36.6
Q ss_pred chhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhcc
Q 037121 409 IFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSK 448 (683)
Q Consensus 409 ~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~ 448 (683)
++++..+.+.|++|+|+++|.+++.+++..|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3478889999999999999999999999999999999973
No 112
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.22 E-value=0.019 Score=63.77 Aligned_cols=263 Identities=19% Similarity=0.205 Sum_probs=168.8
Q ss_pred HHHHHHHHhcCchhhHHHHhcCChHHHHhhc----------CCCCHHHHHHHHHHHHhhccCCch-hhHHhhcCcHHHHH
Q 037121 398 AYEIRLLAKSNIFNRSCIVESGAIPPLLNLL----------SSPDQCVQENAVAALLKLSKHTSG-KKVIVESGGLKVIL 466 (683)
Q Consensus 398 ~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL----------~s~d~~~q~~A~~aL~nLs~~~~~-r~~i~~~g~i~~Lv 466 (683)
+..||.+++ ++.+...+....++..|+.+- ...+..+...|+++|.|+-.+... |..+++.|..+.++
T Consensus 2 L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 455666666 344444555444455555543 346889999999999999877665 88888999999999
Q ss_pred HHHcCC----CCHHHHHHHHHHHHHhcc-CchhHHHhhccCCChHHHHHhhhc----------C-------CHHHHHHHH
Q 037121 467 KVLKSG----LSLEARQIAAATLFYLTS-VKGYRKLIGETPKAIPALVKLIEE----------G-------TDCGKKNAV 524 (683)
Q Consensus 467 ~lL~~~----~~~e~~~~Aa~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~----------~-------~~~~~~~A~ 524 (683)
..|+.. .+.+..-....+||-++. ..+.+..+....+++..++..|.. . +......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999875 257788889999998876 445666666657788888776542 0 234566899
Q ss_pred HHHHHcccCCchhhhHhhcCcHHHHHHHHcc--------CCChhHHHHHHHHHHHhhC-Chhh-------HHHH----Hh
Q 037121 525 VAIFGLLLSQGNHQKVLDAGTVPLLADILAS--------SNRTELITDSLAVLANLAE-DIQG-------TSTI----LK 584 (683)
Q Consensus 525 ~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~--------~~~~~~~~~al~iL~nLa~-~~~~-------~~~i----~~ 584 (683)
.++||+..+......-...+.++.|+.+|.. .+.......++.+|.|+.- .... ...+ ..
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 9999998765543322333455665555421 1234566778888888742 1111 0011 11
Q ss_pred cCChHHHHHhhccCC----Ch---HHHHHHHHHHHHHhcCChHHHHHHHh---------------cCCCcHHHHHHhHhc
Q 037121 585 TSALPVIIGLLQTLT----SR---AGKEYCVSILLSLCSNAREEVTASLA---------------KDPSLMNSLYSLTTD 642 (683)
Q Consensus 585 ~g~i~~Lv~lL~~~~----s~---~~ke~A~~~L~~L~~~~~~~~~~~l~---------------~~~g~i~~L~~Ll~~ 642 (683)
...+..|+++|+..- .. ..-.--+.+|.+++... ...++.+. ++..+-..|+.++.+
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~-~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~ 319 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA-REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS 319 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc-HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence 113666777665420 11 12223445566666654 23333332 345688899999999
Q ss_pred CCHHHHHHHHHHHHHHHHhh
Q 037121 643 GTSQARKKARSLIKILHKFI 662 (683)
Q Consensus 643 g~~~~k~~A~~lL~~l~~~~ 662 (683)
..+.+|..++.++..|.+-.
T Consensus 320 ~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 320 PDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CCchHHHHHHHHHHHHHhhh
Confidence 89999999999998887643
No 113
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.20 E-value=0.032 Score=60.20 Aligned_cols=252 Identities=17% Similarity=0.079 Sum_probs=171.7
Q ss_pred HHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCC-CCHHHHH
Q 037121 401 IRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSG-LSLEARQ 479 (683)
Q Consensus 401 L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~e~~~ 479 (683)
|-.+-+.++.-+..+.-.-..+.+..++-+++.+++..+..++..+..+.+.-..+.+.+.---++.-|..+ .+..-|+
T Consensus 7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~ 86 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVERE 86 (371)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHH
Confidence 344444445444444434444555555555569999999999999999988888888777666666667654 2456789
Q ss_pred HHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCCh
Q 037121 480 IAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRT 559 (683)
Q Consensus 480 ~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~ 559 (683)
+|...+..+.........+ . .|++..++.+..+.++..+..|+.+|+.++..+ -..+++.|++..|++.+ .++..
T Consensus 87 QALkliR~~l~~~~~~~~~-~-~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l-~d~~~ 161 (371)
T PF14664_consen 87 QALKLIRAFLEIKKGPKEI-P-RGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRAL-IDGSF 161 (371)
T ss_pred HHHHHHHHHHHhcCCcccC-C-HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHH-HhccH
Confidence 9999998887765444333 2 578899999999989999999999999998753 34567889999999999 44444
Q ss_pred hHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHH-hhcc----CC-Ch---HHHHHHHHHHHHHhcCChHHHHHHHhc-C
Q 037121 560 ELITDSLAVLANLAEDIQGTSTILKTSALPVIIG-LLQT----LT-SR---AGKEYCVSILLSLCSNAREEVTASLAK-D 629 (683)
Q Consensus 560 ~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~-lL~~----~~-s~---~~ke~A~~~L~~L~~~~~~~~~~~l~~-~ 629 (683)
.+.+..+.++-.+-.+|..|..+...-.+..++. +.+. .. .. ..+..+..+..-|-+.++- -.+.. +
T Consensus 162 ~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GL---l~l~~~~ 238 (371)
T PF14664_consen 162 SISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGL---LYLSMND 238 (371)
T ss_pred hHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCce---eeeecCC
Confidence 5888899999999999998887766444777666 3333 10 11 2222333333333333221 11111 1
Q ss_pred CCcHHHHHHhHhcCCHHHHHHHHHHHHHHHH
Q 037121 630 PSLMNSLYSLTTDGTSQARKKARSLIKILHK 660 (683)
Q Consensus 630 ~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 660 (683)
-..+..|+..+...++.+|+....++.-+=+
T Consensus 239 ~~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 239 FRGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 1368889999999999999888887765444
No 114
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.17 E-value=0.032 Score=61.00 Aligned_cols=153 Identities=20% Similarity=0.163 Sum_probs=114.5
Q ss_pred CChHHHHhhcC-CCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHH
Q 037121 419 GAIPPLLNLLS-SPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKL 497 (683)
Q Consensus 419 G~i~~Lv~lL~-s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 497 (683)
.+++.|+..|. .++.++...++.+|... + ...++..++..|.+. +..++..++.+|..+
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~--------~~~~~~~L~~~L~d~-~~~vr~aaa~ALg~i--------- 113 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ--E--------DALDLRSVLAVLQAG-PEGLCAGIQAALGWL--------- 113 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc--C--------ChHHHHHHHHHhcCC-CHHHHHHHHHHHhcC---------
Confidence 46888999994 56677766555554322 2 112489999999888 778899888888754
Q ss_pred hhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChh
Q 037121 498 IGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQ 577 (683)
Q Consensus 498 i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~ 577 (683)
.. .++.+.|+.+|.+.++.++..++.++.. ......+.+..+| .+.++.+...|+.+|+.+..
T Consensus 114 -~~-~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~--- 176 (410)
T TIGR02270 114 -GG-RQAEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAAL-THEDALVRAAALRALGELPR--- 176 (410)
T ss_pred -Cc-hHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHh-cCCCHHHHHHHHHHHHhhcc---
Confidence 23 6788999999999999998888877766 1223567899999 78899999999999987654
Q ss_pred hHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 037121 578 GTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCS 616 (683)
Q Consensus 578 ~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~ 616 (683)
...++.|...+.+. ++.++..|+..|..+..
T Consensus 177 -------~~a~~~L~~al~d~-~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 177 -------RLSESTLRLYLRDS-DPEVRFAALEAGLLAGS 207 (410)
T ss_pred -------ccchHHHHHHHcCC-CHHHHHHHHHHHHHcCC
Confidence 24566677777776 88999999988866643
No 115
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00023 Score=74.22 Aligned_cols=47 Identities=19% Similarity=0.464 Sum_probs=39.7
Q ss_pred ccCCCCcccCCCc--e-eccCcccccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 280 FRCPISLELMTDP--V-TVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 280 f~CpIc~~~m~dP--v-~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
+.|.||+|-+.+- + ++||+|.|-..||..|+......||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 6999999999644 3 579999999999999999865679999986543
No 116
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.025 Score=63.48 Aligned_cols=256 Identities=16% Similarity=0.173 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC-CCHHHHHHHHHHHHhhccCCch-
Q 037121 375 MKLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS-PDQCVQENAVAALLKLSKHTSG- 452 (683)
Q Consensus 375 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~q~~A~~aL~nLs~~~~~- 452 (683)
.+...+.|++.|...++.+|-.|+..|-.||+.+|.|.-.++ |.+.++|.+ .|.=+....+...++|+-.++.
T Consensus 179 lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LA-----P~ffkllttSsNNWmLIKiiKLF~aLtplEPRL 253 (877)
T KOG1059|consen 179 LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLA-----PLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL 253 (877)
T ss_pred HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccccc-----HHHHHHHhccCCCeehHHHHHHHhhccccCchh
Confidence 445778899999999999999999999999999988865543 888888865 4444566677888888866553
Q ss_pred hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHH--HhccCc-hhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 037121 453 KKVIVESGGLKVILKVLKSGLSLEARQIAAATLF--YLTSVK-GYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFG 529 (683)
Q Consensus 453 r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~--~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n 529 (683)
.. ..+++|..++.+..-+.+.-.+..++. +++.+. ++-..|. -++..|-.++.+.++..+--++.++..
T Consensus 254 gK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq---LCvqKLr~fiedsDqNLKYlgLlam~K 325 (877)
T KOG1059|consen 254 GK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ---LCVQKLRIFIEDSDQNLKYLGLLAMSK 325 (877)
T ss_pred hh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH---HHHHHHhhhhhcCCccHHHHHHHHHHH
Confidence 22 347888888887644444444544443 333332 3333332 267777788888888899899999988
Q ss_pred cccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHH
Q 037121 530 LLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVS 609 (683)
Q Consensus 530 Ls~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~ 609 (683)
+...+ ...|++ --+.++++| ++.++.++-.|+..|.-+... ++...|+ ..|++.+.......-+..-+.
T Consensus 326 I~ktH---p~~Vqa-~kdlIlrcL-~DkD~SIRlrALdLl~gmVsk-kNl~eIV-----k~LM~~~~~ae~t~yrdell~ 394 (877)
T KOG1059|consen 326 ILKTH---PKAVQA-HKDLILRCL-DDKDESIRLRALDLLYGMVSK-KNLMEIV-----KTLMKHVEKAEGTNYRDELLT 394 (877)
T ss_pred HhhhC---HHHHHH-hHHHHHHHh-ccCCchhHHHHHHHHHHHhhh-hhHHHHH-----HHHHHHHHhccchhHHHHHHH
Confidence 87533 222222 234567888 888999999999999877653 3333333 355553333212244444444
Q ss_pred HHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhc-CCHHHHHHHHHHHHH
Q 037121 610 ILLSLCSNAREEVTASLAKDPSLMNSLYSLTTD-GTSQARKKARSLIKI 657 (683)
Q Consensus 610 ~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~-g~~~~k~~A~~lL~~ 657 (683)
-+..+|+.++-......-. .+..|++|..- |+..+..-|..++-.
T Consensus 395 ~II~iCS~snY~~ItdFEW---YlsVlveLa~l~~~~~G~~I~eQi~Dv 440 (877)
T KOG1059|consen 395 RIISICSQSNYQYITDFEW---YLSVLVELARLEGTRHGSLIAEQIIDV 440 (877)
T ss_pred HHHHHhhhhhhhhhhhHHH---HHHHHHHHHhccccchhhHHHHHHHHH
Confidence 4567787654332222221 25556666543 344444444444443
No 117
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00026 Score=72.53 Aligned_cols=47 Identities=21% Similarity=0.523 Sum_probs=40.4
Q ss_pred CCCccCCCCcccCCCc-------------eeccCcccccHHHHHHHHHhCCCCCCCCCccc
Q 037121 277 PEDFRCPISLELMTDP-------------VTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKL 324 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dP-------------v~~~cght~~r~cI~~w~~~~~~~CP~c~~~l 324 (683)
.++-.|.||++-|..| --++|||.+--+|+..|++. .-+||+|+.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 4578999999886433 57899999999999999998 88999999884
No 118
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.15 E-value=0.00046 Score=56.71 Aligned_cols=47 Identities=23% Similarity=0.392 Sum_probs=36.1
Q ss_pred CccCCCCcccCCC-ceec-cCcccccHHHHHHHHHh--CCCCCCCCCcccC
Q 037121 279 DFRCPISLELMTD-PVTV-STGQTYDRSSIQKWLKA--GNMLCPKTGEKLT 325 (683)
Q Consensus 279 ~f~CpIc~~~m~d-Pv~~-~cght~~r~cI~~w~~~--~~~~CP~c~~~l~ 325 (683)
+-.||.|...-.| |++. .|||.|-..||.+|+.. ++.+||.||++..
T Consensus 32 dg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 32 DGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 4456666665544 5544 79999999999999996 3579999998754
No 119
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.13 E-value=0.00016 Score=67.63 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=40.3
Q ss_pred CccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCccc
Q 037121 279 DFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKL 324 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l 324 (683)
.|.|-||.+-+..||++.|||.||..|..+-+.. ...|-+|++..
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhh
Confidence 5999999999999999999999999998887776 67899998754
No 120
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.13 E-value=0.0016 Score=54.74 Aligned_cols=86 Identities=35% Similarity=0.527 Sum_probs=69.8
Q ss_pred hHHHHhhc-CCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhh
Q 037121 421 IPPLLNLL-SSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIG 499 (683)
Q Consensus 421 i~~Lv~lL-~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~ 499 (683)
||.|++.| +++++.++..|+.+|+++- ...+++.|+.+++++ +..+|..|+.+|..+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDE-DPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSS-SHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCC-CHHHHHHHHHHHHHhC----------
Confidence 68899989 8899999999999999553 235699999999877 8999999999999872
Q ss_pred ccCCChHHHHHhhhcCCH-HHHHHHHHHHH
Q 037121 500 ETPKAIPALVKLIEEGTD-CGKKNAVVAIF 528 (683)
Q Consensus 500 ~~~g~i~~Lv~lL~~~~~-~~~~~A~~aL~ 528 (683)
. ..+++.|.+++.+++. .++..|+.+|.
T Consensus 60 ~-~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 D-PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp H-HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2 5589999999987654 45778888774
No 121
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00021 Score=81.29 Aligned_cols=47 Identities=26% Similarity=0.560 Sum_probs=42.5
Q ss_pred CCCccCCCCcccCCC-----ceeccCcccccHHHHHHHHHhCCCCCCCCCccc
Q 037121 277 PEDFRCPISLELMTD-----PVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKL 324 (683)
Q Consensus 277 ~~~f~CpIc~~~m~d-----Pv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l 324 (683)
..+-.|+||.+.|.. |-.++|||.|+..|+.+|++. ..+||.|+..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 447899999999998 788999999999999999998 88999999844
No 122
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0002 Score=71.60 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=46.4
Q ss_pred CccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHH
Q 037121 279 DFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLI 339 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i 339 (683)
.|.|-||.+.+.+||++.|||+||..|-.+.+.. ...|++|++.... .+.+...|...+
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~g-~~~~akeL~~~L 299 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTHG-SFNVAKELLVSL 299 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccccc-ccchHHHHHHHH
Confidence 5889999999999999999999999998888876 6789999876543 343444443333
No 123
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.07 E-value=0.011 Score=55.16 Aligned_cols=125 Identities=20% Similarity=0.248 Sum_probs=100.4
Q ss_pred CCChHHHHHhhhcCCH------HHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCC-ChhHHHHHHHHHHHhhC
Q 037121 502 PKAIPALVKLIEEGTD------CGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSN-RTELITDSLAVLANLAE 574 (683)
Q Consensus 502 ~g~i~~Lv~lL~~~~~------~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~-~~~~~~~al~iL~nLa~ 574 (683)
.+|+..|++++.+++. .....++.++..|..+.-.-+..++..+|...+..+.... +..+...|+++|.++..
T Consensus 10 ~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl 89 (160)
T PF11841_consen 10 RDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVL 89 (160)
T ss_pred ccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHh
Confidence 6899999999998773 6777899999999888666788888889999999984333 68899999999999987
Q ss_pred ChhhHHHHHhcCC-hHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHh
Q 037121 575 DIQGTSTILKTSA-LPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLA 627 (683)
Q Consensus 575 ~~~~~~~i~~~g~-i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~ 627 (683)
+.......+.... ++.|+..|+.. ++..+.+|++.+-.|....++.-++.+.
T Consensus 90 ~S~~ly~~V~~evt~~~Li~hLq~~-~~~iq~naiaLinAL~~kA~~~~r~~i~ 142 (160)
T PF11841_consen 90 NSPKLYQLVEQEVTLESLIRHLQVS-NQEIQTNAIALINALFLKADDSKRKEIA 142 (160)
T ss_pred CCHHHHHHHhccCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 6565555555565 99999999987 8999999999988887776555444443
No 124
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.047 Score=60.70 Aligned_cols=271 Identities=16% Similarity=0.177 Sum_probs=172.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHH-HHHH----HHhhccCCch
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQEN-AVAA----LLKLSKHTSG 452 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~-A~~a----L~nLs~~~~~ 452 (683)
..+.+.+.+.+.....+..+++.+..+.+.. .-..+.+.+++..|.....+........ +.-+ ..+|.
T Consensus 135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg----- 207 (569)
T KOG1242|consen 135 VLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG----- 207 (569)
T ss_pred HHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-----
Confidence 4566667777777888999999988888743 2345666788888888887754433332 1111 12222
Q ss_pred hhHHhhcCcHHHHHHHHcCC--CCHHHHHHHHHHHHHhccC-chhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 037121 453 KKVIVESGGLKVILKVLKSG--LSLEARQIAAATLFYLTSV-KGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFG 529 (683)
Q Consensus 453 r~~i~~~g~i~~Lv~lL~~~--~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n 529 (683)
.-.+.+.++.+-.+|.+- ....+|+.|..+...+-.. +.+. ..-.+|.++.-+....-+.+..++..|..
T Consensus 208 --~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a-----VK~llpsll~~l~~~kWrtK~aslellg~ 280 (569)
T KOG1242|consen 208 --PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA-----VKLLLPSLLGSLLEAKWRTKMASLELLGA 280 (569)
T ss_pred --CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch-----hhHhhhhhHHHHHHHhhhhHHHHHHHHHH
Confidence 223566666666666541 1456666666555444221 1111 13345555555544455788889999998
Q ss_pred cccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC---ChhhH---------------------HHH---
Q 037121 530 LLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE---DIQGT---------------------STI--- 582 (683)
Q Consensus 530 Ls~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~---~~~~~---------------------~~i--- 582 (683)
+..+....-...-..+||.+.+.| .+..++++..+..+|..+++ +++.. ..+
T Consensus 281 m~~~ap~qLs~~lp~iiP~lsevl-~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~t 359 (569)
T KOG1242|consen 281 MADCAPKQLSLCLPDLIPVLSEVL-WDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGAT 359 (569)
T ss_pred HHHhchHHHHHHHhHhhHHHHHHH-ccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcce
Confidence 888887777777788999999999 88889999999999988873 22211 111
Q ss_pred -----HhcCChHHHHHhhccCC---ChHHHHHHHHHHHHHhcCC--hHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHH
Q 037121 583 -----LKTSALPVIIGLLQTLT---SRAGKEYCVSILLSLCSNA--REEVTASLAKDPSLMNSLYSLTTDGTSQARKKAR 652 (683)
Q Consensus 583 -----~~~g~i~~Lv~lL~~~~---s~~~ke~A~~~L~~L~~~~--~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~ 652 (683)
++...+..++-+|+.+- +...+..++.+..|||.-- +..+..-+ ..++|-|-..+.+..|.+|.-|.
T Consensus 360 tFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl---~~Llp~lk~~~~d~~PEvR~vaa 436 (569)
T KOG1242|consen 360 TFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL---PSLLPGLKENLDDAVPEVRAVAA 436 (569)
T ss_pred eeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH---HHHhhHHHHHhcCCChhHHHHHH
Confidence 22233445555555431 5557788888999999864 23333333 23577777777777899999988
Q ss_pred HHHHHHHHhhhhcC
Q 037121 653 SLIKILHKFIETCS 666 (683)
Q Consensus 653 ~lL~~l~~~~~~~~ 666 (683)
.+|..+.+...+.+
T Consensus 437 rAL~~l~e~~g~~~ 450 (569)
T KOG1242|consen 437 RALGALLERLGEVS 450 (569)
T ss_pred HHHHHHHHHHHhhc
Confidence 88855554444333
No 125
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.01 E-value=0.11 Score=55.46 Aligned_cols=185 Identities=21% Similarity=0.225 Sum_probs=127.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHH
Q 037121 377 LMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVI 456 (683)
Q Consensus 377 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i 456 (683)
..+..+++.+.+.++..+..|+..+..+. ..-++|.|..+|.+.+..++..|+.+|+++-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 35678888888888888888887744432 2346899999999999999999999888774
Q ss_pred hhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHH------------HHHHH
Q 037121 457 VESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCG------------KKNAV 524 (683)
Q Consensus 457 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~------------~~~A~ 524 (683)
...+++.++..|.+..+..+|..|+.+|..+-. ..++..|+..+.+..... +..+.
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKLGD-----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 345789999999964388999999999998853 345788888887755322 22233
Q ss_pred HHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHH
Q 037121 525 VAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGK 604 (683)
Q Consensus 525 ~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~k 604 (683)
.+|..+ -..-.++.+...+ .+....++..|...|..+.... ......+...+... +...+
T Consensus 171 ~~l~~~----------~~~~~~~~l~~~l-~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~-~~~vr 230 (335)
T COG1413 171 EALGEL----------GDPEAIPLLIELL-EDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDE-SLEVR 230 (335)
T ss_pred HHHHHc----------CChhhhHHHHHHH-hCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCC-CHHHH
Confidence 333222 2334677888888 6677788889998888887653 12234444555544 55555
Q ss_pred HHHHHHHHH
Q 037121 605 EYCVSILLS 613 (683)
Q Consensus 605 e~A~~~L~~ 613 (683)
..++.+|..
T Consensus 231 ~~~~~~l~~ 239 (335)
T COG1413 231 KAALLALGE 239 (335)
T ss_pred HHHHHHhcc
Confidence 555544433
No 126
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.02 Score=62.56 Aligned_cols=239 Identities=15% Similarity=0.105 Sum_probs=163.0
Q ss_pred HHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHh-hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch
Q 037121 415 IVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIV-ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKG 493 (683)
Q Consensus 415 i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~ 493 (683)
+.-.++||.|-.-+...++.++.-.+.-|.-|-..++ .+.+- -...++.|..+|... +.++|..+-.+|.++-..-.
T Consensus 163 FsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~-~~m~~yl~~~ldGLf~~LsD~-s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 163 FSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD-LEMISYLPSLLDGLFNMLSDS-SDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc-HHHHhcchHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHh
Confidence 3335667777777777788888887777776644433 22222 345788888899888 88998777776665533212
Q ss_pred hHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCCh-hHHHHHHH---HH
Q 037121 494 YRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRT-ELITDSLA---VL 569 (683)
Q Consensus 494 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~-~~~~~al~---iL 569 (683)
++..-......++.|+.-+.+.++..+..|+.-+.....-.+......-.|++..++.++ ++... .+.+.+.. .|
T Consensus 241 s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~-s~~e~~~i~~~a~~~n~~l 319 (675)
T KOG0212|consen 241 SSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCL-SDTEEMSIKEYAQMVNGLL 319 (675)
T ss_pred cCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCC-CCCccccHHHHHHHHHHHH
Confidence 222222336688999999999999999999999988887777666666778888889988 44333 33333332 23
Q ss_pred HHhhCChhhHHHHHhcCC-hHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHH
Q 037121 570 ANLAEDIQGTSTILKTSA-LPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQAR 648 (683)
Q Consensus 570 ~nLa~~~~~~~~i~~~g~-i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k 648 (683)
..+++.+...+. .+-|. +..+.+++.+. ....|-.++.-+..|-...+.+ .+.....+++.|+.-+.+.++.+-
T Consensus 320 ~~l~s~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~q---l~~h~~~if~tLL~tLsd~sd~vv 394 (675)
T KOG0212|consen 320 LKLVSSERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQ---LLVHNDSIFLTLLKTLSDRSDEVV 394 (675)
T ss_pred HHHHhhhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcch---hhhhccHHHHHHHHhhcCchhHHH
Confidence 445555555544 55555 77788888876 7778888887777766655443 233335688888888888888888
Q ss_pred HHHHHHHHHHHHh
Q 037121 649 KKARSLIKILHKF 661 (683)
Q Consensus 649 ~~A~~lL~~l~~~ 661 (683)
..+..++..+...
T Consensus 395 l~~L~lla~i~~s 407 (675)
T KOG0212|consen 395 LLALSLLASICSS 407 (675)
T ss_pred HHHHHHHHHHhcC
Confidence 8888888766543
No 127
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.96 E-value=0.0058 Score=61.46 Aligned_cols=187 Identities=19% Similarity=0.168 Sum_probs=115.9
Q ss_pred CCCCHHHHHHHHHHHHHhccCc---hhHHHhhc-cCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcH
Q 037121 471 SGLSLEARQIAAATLFYLTSVK---GYRKLIGE-TPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTV 546 (683)
Q Consensus 471 ~~~~~e~~~~Aa~~L~~Ls~~~---~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v 546 (683)
++.+++.|..|...|..+.... .....+.. -...+..+...+.+....+.+.|+.++..|+..-+..-.-.-..++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 3348899999999999887655 22333222 1235567777777767788899999999998765554333334588
Q ss_pred HHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCCh---HHHH
Q 037121 547 PLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAR---EEVT 623 (683)
Q Consensus 547 ~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~---~~~~ 623 (683)
|.|++.+ .++..-+.+.|..+|..++..-.....+. ++.+...+.+. ++..|..++..|..+....+ ....
T Consensus 97 ~~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~~~~~~~----~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 97 PPLLKKL-GDSKKFIREAANNALDAIIESCSYSPKIL----LEILSQGLKSK-NPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHGG-G---HHHHHHHHHHHHHHHTTS-H--HHH----HHHHHHHTT-S--HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHH-ccccHHHHHHHHHHHHHHHHHCCcHHHHH----HHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 8999998 66678899999999999886432111110 34455566776 89999999999888776543 1111
Q ss_pred HH-HhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhhhhc
Q 037121 624 AS-LAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFIETC 665 (683)
Q Consensus 624 ~~-l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~~~ 665 (683)
.. .. ..+++.+...+.++++.+|..|..++..+.+....+
T Consensus 171 ~~~~~--~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 171 KSAFL--KQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp -HHHH--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred ccchH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 11 11 236888999999999999999999999888776533
No 128
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.0039 Score=67.49 Aligned_cols=163 Identities=14% Similarity=0.072 Sum_probs=117.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch--hhHH
Q 037121 379 SRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG--KKVI 456 (683)
Q Consensus 379 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~--r~~i 456 (683)
+..|++.|+..+..+.--+...+-++.-....-+..+.+.|+|..|+.++.+.|..+|.+..|.|..+-.+.++ +-+.
T Consensus 433 ~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~ 512 (743)
T COG5369 433 VELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKF 512 (743)
T ss_pred HHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhh
Confidence 35666666553322233344445555544456688899999999999999999999999999999999877665 5666
Q ss_pred hhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchh----HHHhhc-c-CC-ChHHHHHhhhcCCHHHHHHHHHHHHH
Q 037121 457 VESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGY----RKLIGE-T-PK-AIPALVKLIEEGTDCGKKNAVVAIFG 529 (683)
Q Consensus 457 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~----~~~i~~-~-~g-~i~~Lv~lL~~~~~~~~~~A~~aL~n 529 (683)
+..-+++.++++...+ ...+++++..+|.|+..+... +..... . .. ....|++.+...++-.....+..|.+
T Consensus 513 Lakig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~ 591 (743)
T COG5369 513 LAKIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVR 591 (743)
T ss_pred HHhcCHHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHH
Confidence 7777899999999888 889999999999999874321 111111 0 11 34566777777777777777888888
Q ss_pred cccCCchhhhHhh
Q 037121 530 LLLSQGNHQKVLD 542 (683)
Q Consensus 530 Ls~~~~n~~~iv~ 542 (683)
++..+++...++.
T Consensus 592 ~aa~d~~l~~~V~ 604 (743)
T COG5369 592 NAACDDTLDYIVQ 604 (743)
T ss_pred HHhccchHHHHHH
Confidence 8888887665543
No 129
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.92 E-value=0.00041 Score=74.03 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=46.1
Q ss_pred CCCCccCCCCcccCCCceeccCcccccHHHHHHHHHh----CCCCCCCCCcccCCCCC
Q 037121 276 NPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKA----GNMLCPKTGEKLTNTEL 329 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~----~~~~CP~c~~~l~~~~l 329 (683)
-..+-.|.+|.+.-.||+..+|.|+|||-||.++... .+-+||.|...++.+.-
T Consensus 533 nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDls 590 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLS 590 (791)
T ss_pred ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccccc
Confidence 3457789999999999999999999999999888875 45799999988876533
No 130
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.29 Score=55.33 Aligned_cols=219 Identities=15% Similarity=0.138 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchh-hHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhcc-CCch
Q 037121 375 MKLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFN-RSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSK-HTSG 452 (683)
Q Consensus 375 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~-r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~-~~~~ 452 (683)
.+.+...++..|.+.-+-++.+|+-.+..+.-..++. | ..+|.|+.-|.++|+.+|..|+.++..|+. +++|
T Consensus 142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr------~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR------PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh------hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 3557788889999999999999998887766544443 3 345899999999999999999999999995 4555
Q ss_pred hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCH-HHHHHHHHHHH--H
Q 037121 453 KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTD-CGKKNAVVAIF--G 529 (683)
Q Consensus 453 r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~A~~aL~--n 529 (683)
-..+ -|.+.++|....+............+|+.... ++| ...+++|.+++.+... ...-.+..++. +
T Consensus 216 yL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEP---RLg--KKLieplt~li~sT~AmSLlYECvNTVVa~s 285 (877)
T KOG1059|consen 216 YLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RLG--KKLIEPITELMESTVAMSLLYECVNTVVAVS 285 (877)
T ss_pred cccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCc---hhh--hhhhhHHHHHHHhhHHHHHHHHHHHHheeeh
Confidence 4433 36677777665455666667777777776432 333 3578999999887543 23333433333 3
Q ss_pred cccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHH
Q 037121 530 LLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCV 608 (683)
Q Consensus 530 Ls~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~ 608 (683)
++....++...++. +|+.|-.++ .+.++.+..-.+-++..+.. ++...++.. ..+++.|... ++..|-.|+
T Consensus 286 ~s~g~~d~~asiqL-CvqKLr~fi-edsDqNLKYlgLlam~KI~ktHp~~Vqa~k-----dlIlrcL~Dk-D~SIRlrAL 357 (877)
T KOG1059|consen 286 MSSGMSDHSASIQL-CVQKLRIFI-EDSDQNLKYLGLLAMSKILKTHPKAVQAHK-----DLILRCLDDK-DESIRLRAL 357 (877)
T ss_pred hccCCCCcHHHHHH-HHHHHhhhh-hcCCccHHHHHHHHHHHHhhhCHHHHHHhH-----HHHHHHhccC-CchhHHHHH
Confidence 34333344444443 778888888 78889999988888888875 554443332 4677888877 888999999
Q ss_pred HHHHHHhcC
Q 037121 609 SILLSLCSN 617 (683)
Q Consensus 609 ~~L~~L~~~ 617 (683)
..|..+...
T Consensus 358 dLl~gmVsk 366 (877)
T KOG1059|consen 358 DLLYGMVSK 366 (877)
T ss_pred HHHHHHhhh
Confidence 999888875
No 131
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.0058 Score=66.18 Aligned_cols=260 Identities=12% Similarity=0.088 Sum_probs=175.9
Q ss_pred HHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch-hhHHhhcCcHHHHHHHHcCCCC
Q 037121 396 KAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KKVIVESGGLKVILKVLKSGLS 474 (683)
Q Consensus 396 ~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~-r~~i~~~g~i~~Lv~lL~~~~~ 474 (683)
.++..|..++++-..-|.-+.+..++++|+++|+.++..+.--+...+.|+.-.-.| +..+++.|.|..|++++.+. +
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK-D 486 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK-D 486 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-h
Confidence 445556777776666788888899999999999987777777778888887655444 99999999999999999977 6
Q ss_pred HHHHHHHHHHHHHhccCchhHH--HhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCc----hhhhHhhcC----
Q 037121 475 LEARQIAAATLFYLTSVKGYRK--LIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQG----NHQKVLDAG---- 544 (683)
Q Consensus 475 ~e~~~~Aa~~L~~Ls~~~~~~~--~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~----n~~~iv~~g---- 544 (683)
...+.+..|+|.++..+..+.. .... .-++..++++.+++.-.++...+..|.|+..+.. .+.-+++..
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~La-kig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLA-KIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHH-hcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 7889999999999988765442 3334 5678899999888888999999999999977432 222222221
Q ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHhhCChhh-HHHHHhcCC-hHHHHHhhcc---------CCChH-----------
Q 037121 545 TVPLLADILASSNRTELITDSLAVLANLAEDIQG-TSTILKTSA-LPVIIGLLQT---------LTSRA----------- 602 (683)
Q Consensus 545 ~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~-~~~i~~~g~-i~~Lv~lL~~---------~~s~~----------- 602 (683)
....|++.+ ...++-.....+.+|.+++..++. +..+.+..- +..+.++|.. |..+.
T Consensus 566 lfk~l~~k~-e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v 644 (743)
T COG5369 566 LFKRLIDKY-EENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIV 644 (743)
T ss_pred HHHHHHHHH-HhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeee
Confidence 344566666 455666666778888888765444 444433332 3333333311 10000
Q ss_pred -HHHH-------------------------------HHHHHHHHhcC--C------hHHHHHHHhcCCCcHHHHHHhHhc
Q 037121 603 -GKEY-------------------------------CVSILLSLCSN--A------REEVTASLAKDPSLMNSLYSLTTD 642 (683)
Q Consensus 603 -~ke~-------------------------------A~~~L~~L~~~--~------~~~~~~~l~~~~g~i~~L~~Ll~~ 642 (683)
..|+ ..++..|+... + ..+..+.++. .|+-..|+.+..+
T Consensus 645 ~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~-~G~~e~l~k~q~~ 723 (743)
T COG5369 645 NLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCA-NGIREWLVKIQAK 723 (743)
T ss_pred cccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHH-ccHHHHHHHHhcc
Confidence 1111 11111121111 0 1244566776 8989999988888
Q ss_pred CCHHHHHHHHHHHHHHH
Q 037121 643 GTSQARKKARSLIKILH 659 (683)
Q Consensus 643 g~~~~k~~A~~lL~~l~ 659 (683)
.++.+++++..+|.+++
T Consensus 724 ~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 724 DSLIVREKIGTALENLR 740 (743)
T ss_pred CcHHHHHHHHHHHHhhh
Confidence 89999999999998876
No 132
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.00068 Score=67.81 Aligned_cols=46 Identities=17% Similarity=0.468 Sum_probs=38.5
Q ss_pred ccCCCCcccCC--Cce-eccCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 280 FRCPISLELMT--DPV-TVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 280 f~CpIc~~~m~--dPv-~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
-.|.||++-+. |-+ .+||.|.|-+.|+.+|+......||+|+.+++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 57999998773 444 57999999999999999976789999998765
No 133
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.80 E-value=0.046 Score=63.72 Aligned_cols=220 Identities=15% Similarity=0.110 Sum_probs=153.4
Q ss_pred HHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHH-hhccCCchhhHHhhcCcHHHHHHHHcC-C-
Q 037121 396 KAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALL-KLSKHTSGKKVIVESGGLKVILKVLKS-G- 472 (683)
Q Consensus 396 ~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~-nLs~~~~~r~~i~~~g~i~~Lv~lL~~-~- 472 (683)
.|+..|..+-.-++=.-..-..-|..|..++||.++-.+++---+-+=. .|+.|+..+..+++.++-...+.+|.. +
T Consensus 489 RAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~ 568 (1387)
T KOG1517|consen 489 RALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQA 568 (1387)
T ss_pred HHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCC
Confidence 3443333333333333334445699999999999988887765554443 456665567888888888888888876 2
Q ss_pred CCHHHHHHHHHHHHHhccCch-hHHHhhccCCChHHHHHhhhcC-CHHHHHHHHHHHHHcccC-CchhhhHhhcCcHHHH
Q 037121 473 LSLEARQIAAATLFYLTSVKG-YRKLIGETPKAIPALVKLIEEG-TDCGKKNAVVAIFGLLLS-QGNHQKVLDAGTVPLL 549 (683)
Q Consensus 473 ~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~-~~n~~~iv~~g~v~~L 549 (683)
.+.|-|.-||.+|..++.+-. ..+.... .+.+...+..|.++ .+-.+...+..|..|-.+ ++++..=++.++.+.|
T Consensus 569 ~~~EqrtmaAFVLAviv~nf~lGQ~acl~-~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL 647 (1387)
T KOG1517|consen 569 IPPEQRTMAAFVLAVIVRNFKLGQKACLN-GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKL 647 (1387)
T ss_pred CCHHHHHHHHHHHHHHHcccchhHHHhcc-ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHH
Confidence 245888999999999987643 3333344 77888888888875 466778888999988764 4567777888999999
Q ss_pred HHHHccCCChhHHHHHHHHHHHhhCC-----hhhHHHH------------HhcCCh---HHHHHhhccCCChHHHHHHHH
Q 037121 550 ADILASSNRTELITDSLAVLANLAED-----IQGTSTI------------LKTSAL---PVIIGLLQTLTSRAGKEYCVS 609 (683)
Q Consensus 550 v~lL~~~~~~~~~~~al~iL~nLa~~-----~~~~~~i------------~~~g~i---~~Lv~lL~~~~s~~~ke~A~~ 609 (683)
..+| +++-++++..|+-+|+.+-++ ++....+ .+.-.. ..++.++..+ ++-.+...+.
T Consensus 648 ~~~L-sD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v 725 (1387)
T KOG1517|consen 648 ILLL-SDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVV 725 (1387)
T ss_pred HHHh-cCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHH
Confidence 9999 888899999999999988652 3333222 111112 2566677777 7777666666
Q ss_pred HHHHHhcCC
Q 037121 610 ILLSLCSNA 618 (683)
Q Consensus 610 ~L~~L~~~~ 618 (683)
+|..+..+.
T Consensus 726 ~ls~~~~g~ 734 (1387)
T KOG1517|consen 726 ALSHFVVGY 734 (1387)
T ss_pred HHHHHHHhh
Confidence 777777654
No 134
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0013 Score=65.30 Aligned_cols=50 Identities=26% Similarity=0.396 Sum_probs=42.4
Q ss_pred CCCCccCCCCcccCCCceec-cCcccccHHHHHHHHHh-CCCCCCCCCcccC
Q 037121 276 NPEDFRCPISLELMTDPVTV-STGQTYDRSSIQKWLKA-GNMLCPKTGEKLT 325 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~dPv~~-~cght~~r~cI~~w~~~-~~~~CP~c~~~l~ 325 (683)
-..+-.||+|++.-..|.+. +|||.||-.||..-+.. ..++||.|+.+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 35577899999999999986 59999999999998764 3589999997654
No 135
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.13 Score=57.87 Aligned_cols=270 Identities=17% Similarity=0.155 Sum_probs=170.4
Q ss_pred HHhcCCCH--HHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch--hhHHh-h
Q 037121 384 RRLFFGTN--EEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG--KKVIV-E 458 (683)
Q Consensus 384 ~~L~s~~~--~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~--r~~i~-~ 458 (683)
+.|.+++. -++.+|+-.|-.|-+.+++. +--.+-+..++++|.+.+..+...+...+--|++..+. +..+. .
T Consensus 153 KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~a 229 (938)
T KOG1077|consen 153 KLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLA 229 (938)
T ss_pred HHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHH
Confidence 45656542 34555555555555545542 22235677899999998888888888888778765433 33222 1
Q ss_pred cCcHHHHHHHHcCC---------CCHHHHHHHHHHHHHhccCch--hHHHhhccCCChHHHHHhhhcC--CHHHHH-HH-
Q 037121 459 SGGLKVILKVLKSG---------LSLEARQIAAATLFYLTSVKG--YRKLIGETPKAIPALVKLIEEG--TDCGKK-NA- 523 (683)
Q Consensus 459 ~g~i~~Lv~lL~~~---------~~~e~~~~Aa~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~-~A- 523 (683)
.+-+..++..-..+ ..+.....++.+|.++-..++ .+....+ ++..++...+.. +..+++ +|
T Consensus 230 vs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~e---vl~~iLnk~~~~~~~k~vq~~na~ 306 (938)
T KOG1077|consen 230 VSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNE---VLERILNKAQEPPKSKKVQHSNAK 306 (938)
T ss_pred HHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHH---HHHHHHhccccCccccchHhhhhH
Confidence 12222222221111 145677788888887743322 2333322 455555554421 111221 22
Q ss_pred ---HHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCC
Q 037121 524 ---VVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTS 600 (683)
Q Consensus 524 ---~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s 600 (683)
+--..+|..+-+.-..+.. .++..|-++| ++.+..++-.|+.-+..|+++....+++... ...++..|+...+
T Consensus 307 naVLFeaI~l~~h~D~e~~ll~-~~~~~Lg~fl-s~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterD 382 (938)
T KOG1077|consen 307 NAVLFEAISLAIHLDSEPELLS-RAVNQLGQFL-SHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERD 382 (938)
T ss_pred HHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHh-hcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccc
Confidence 2223455555443333332 2677888888 7788899999999999999887777777665 6778888885547
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhhhhcCCCCCCC
Q 037121 601 RAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFIETCSSGVEGS 672 (683)
Q Consensus 601 ~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~~~~~~~~~~ 672 (683)
...+..|+..|..||-.+ + ++.+ +.-|+..+.+.+..+|+.-.-=...|.+-+...|+|.++.
T Consensus 383 vSirrravDLLY~mcD~~--N-ak~I------V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdv 445 (938)
T KOG1077|consen 383 VSIRRRAVDLLYAMCDVS--N-AKQI------VAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDV 445 (938)
T ss_pred hHHHHHHHHHHHHHhchh--h-HHHH------HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHH
Confidence 789999999999999864 2 2333 3346777888999999987777788899899999998754
No 136
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.39 Score=56.29 Aligned_cols=136 Identities=17% Similarity=0.100 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHh----cCChHHHHhhcCC-CCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHH
Q 037121 394 KNKAAYEIRLLAKSNIFNRSCIVE----SGAIPPLLNLLSS-PDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKV 468 (683)
Q Consensus 394 ~~~a~~~L~~La~~~~~~r~~i~~----~G~i~~Lv~lL~s-~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~l 468 (683)
..-++.+|+++.+.+++-...+.. -|..+.+..+|.. +++.+|.-|+..+..+..+.+.-..|++.|.+..|+.+
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTL 1821 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHH
Confidence 345778889998888855444433 3677777777765 78899999999999999888888899999999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcC-CHHHHHHHHHHHHHccc
Q 037121 469 LKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEG-TDCGKKNAVVAIFGLLL 532 (683)
Q Consensus 469 L~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~ 532 (683)
|.+. +..|+.+..+|..|+++.+-.+.... .|++..+.+++... ++..+..|+..|..|..
T Consensus 1822 LHS~--PS~R~~vL~vLYAL~S~~~i~keA~~-hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1822 LHSQ--PSMRARVLDVLYALSSNGQIGKEALE-HGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HhcC--hHHHHHHHHHHHHHhcCcHHHHHHHh-cCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 9885 46789999999999999887777777 78888888777653 34555566666555543
No 137
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.65 E-value=0.034 Score=64.15 Aligned_cols=269 Identities=14% Similarity=0.127 Sum_probs=150.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcC
Q 037121 381 FLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESG 460 (683)
Q Consensus 381 ~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g 460 (683)
.|++++.+++-+.+.-|...|-.=-..+..+-..=.+..++..|+++|.+.+.++|..|+++|+-|+.. -++.=++ .
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsK--vke~~le-~ 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSK--VKEDQLE-T 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhh--chHHHHH-H
Confidence 678888998888888888766532222211111112345778999999999999999999999998822 1111111 1
Q ss_pred cHHHHHHHHcCCCCHHHHHHH-HHHHHHhccCchhHHHhhccCCChHHHHHhhhc-----CC-HHHHHHHHHHHHHcccC
Q 037121 461 GLKVILKVLKSGLSLEARQIA-AATLFYLTSVKGYRKLIGETPKAIPALVKLIEE-----GT-DCGKKNAVVAIFGLLLS 533 (683)
Q Consensus 461 ~i~~Lv~lL~~~~~~e~~~~A-a~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-----~~-~~~~~~A~~aL~nLs~~ 533 (683)
.++.|..-+-+| ....|--+ .+.....+........... +.+.+.+...+.+ ++ ..++-.++-.|.-+.+.
T Consensus 86 ~ve~L~~~~~s~-keq~rdissi~Lktvi~nl~P~~~~~la-~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr 163 (1233)
T KOG1824|consen 86 IVENLCSNMLSG-KEQLRDISSIGLKTVIANLPPSSSSFLA-ATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR 163 (1233)
T ss_pred HHHHHhhhhccc-hhhhccHHHHHHHHHHhcCCCccccccc-cHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence 123333322233 22333222 2222222222211111112 3344444443332 22 23555666666654443
Q ss_pred Cch-hhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHH
Q 037121 534 QGN-HQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILL 612 (683)
Q Consensus 534 ~~n-~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~ 612 (683)
-+. ... ...++...++.-| .++...++..|+.+|+.|+..- ++... .+.+..|++=|....++....--+.+|.
T Consensus 164 ~g~ll~~-fh~~il~~l~~ql-~s~R~aVrKkai~~l~~la~~~-~~~ly--~~li~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 164 FGTLLPN-FHLSILKCLLPQL-QSPRLAVRKKAITALGHLASSC-NRDLY--VELIEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred hcccCcc-hHHHHHHHHhhcc-cChHHHHHHHHHHHHHHHHHhc-CHHHH--HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 322 111 3345666666667 6778899999999999998521 11111 1234455554443334555556667778
Q ss_pred HHhcCChHHHHHHHhcCCCcHHHHHHhH---hcCCHHHHHHHHHHHH-HHHHhh
Q 037121 613 SLCSNAREEVTASLAKDPSLMNSLYSLT---TDGTSQARKKARSLIK-ILHKFI 662 (683)
Q Consensus 613 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll---~~g~~~~k~~A~~lL~-~l~~~~ 662 (683)
.+|+..+...-.-+ ..++|.+.+.. +..+++.|++....+. ++++++
T Consensus 239 ~i~r~ag~r~~~h~---~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp 289 (1233)
T KOG1824|consen 239 AICRQAGHRFGSHL---DKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCP 289 (1233)
T ss_pred HHHHHhcchhhccc---chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhCh
Confidence 88887655433333 34788888888 7789999999888777 444543
No 138
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.053 Score=60.43 Aligned_cols=173 Identities=18% Similarity=0.174 Sum_probs=125.6
Q ss_pred cCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchh--hHHhh---cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc
Q 037121 418 SGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGK--KVIVE---SGGLKVILKVLKSGLSLEARQIAAATLFYLTSVK 492 (683)
Q Consensus 418 ~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r--~~i~~---~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~ 492 (683)
..++|.|..+|.++|...++-|.++|..++.+.... ..... .-.++.++.+.++. ++..|..|.+.+-......
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCC-ChhHHHHHHhhhhheeecC
Confidence 356899999999999999999999999999876541 11111 12578888889988 8999999998887665443
Q ss_pred hhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHh
Q 037121 493 GYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANL 572 (683)
Q Consensus 493 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nL 572 (683)
. ...+......+..|..+..+.++.+++..+.+|..|......+-.=-=.++|+.+++.- .+.+.++.-+|+.....+
T Consensus 206 ~-qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~t-qd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 206 T-QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRT-QDVDENVALEACEFWLAL 283 (885)
T ss_pred c-HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHc-cCcchhHHHHHHHHHHHH
Confidence 2 22222325688888888888899999999999998876543321111126788888887 677788999999999999
Q ss_pred hCChhhHHHHHhc--CChHHHHH
Q 037121 573 AEDIQGTSTILKT--SALPVIIG 593 (683)
Q Consensus 573 a~~~~~~~~i~~~--g~i~~Lv~ 593 (683)
|..+-.+..+... ..+|.|++
T Consensus 284 aeqpi~~~~L~p~l~kliPvLl~ 306 (885)
T KOG2023|consen 284 AEQPICKEVLQPYLDKLIPVLLS 306 (885)
T ss_pred hcCcCcHHHHHHHHHHHHHHHHc
Confidence 9887555555322 22555554
No 139
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.56 E-value=0.14 Score=54.63 Aligned_cols=155 Identities=25% Similarity=0.291 Sum_probs=112.5
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHh
Q 037121 419 GAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLI 498 (683)
Q Consensus 419 G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i 498 (683)
..++.++.++.+.+..++..|...++.+. ..-+++.+..++... +..+|..|+.+|..+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~-~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDE-DPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCC-CHHHHHHHHHHHHccC---------
Confidence 46788999999999999999998866554 345789999999998 8888998888665552
Q ss_pred hccCCChHHHHHhhh-cCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChh------------HHHHH
Q 037121 499 GETPKAIPALVKLIE-EGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTE------------LITDS 565 (683)
Q Consensus 499 ~~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~------------~~~~a 565 (683)
. ..+++.|+.++. +++..++..|+.+|..+-.. .++..++..+ .+.... ++..+
T Consensus 103 -~-~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l-~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 103 -D-PEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEAL-QDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred -C-hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHh-ccchhhhhhhhccchHHHHHHHH
Confidence 2 568999999998 58889999999999988543 2377888888 433321 12222
Q ss_pred HHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcC
Q 037121 566 LAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSN 617 (683)
Q Consensus 566 l~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~ 617 (683)
+..|. .+.....++.+..++... ...++..|..+|..+...
T Consensus 170 ~~~l~----------~~~~~~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 170 AEALG----------ELGDPEAIPLLIELLEDE-DADVRRAAASALGQLGSE 210 (335)
T ss_pred HHHHH----------HcCChhhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcc
Confidence 22222 122223577888888876 778888888888887776
No 140
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.48 E-value=0.1 Score=58.06 Aligned_cols=227 Identities=15% Similarity=0.135 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhh
Q 037121 375 MKLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKK 454 (683)
Q Consensus 375 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~ 454 (683)
.+..++.++..+....|..+..++..|+.+++..+..- ......+||.|.+.|.+..++++..+..+|.+++..-+|.+
T Consensus 252 VK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qL-s~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d 330 (569)
T KOG1242|consen 252 VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQL-SLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD 330 (569)
T ss_pred hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHH-HHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH
Confidence 34567777777777789999999999999988665543 34447899999999999999999999999999998777766
Q ss_pred HHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhh----cCCHHHHHHHHHHHHHc
Q 037121 455 VIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIE----EGTDCGKKNAVVAIFGL 530 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~----~~~~~~~~~A~~aL~nL 530 (683)
.. -.++.|++.+..+ +..+ -.++..|.... .... +. .-.+..++.+|+ ..+...++.++.+..|+
T Consensus 331 I~---~~ip~Lld~l~dp-~~~~----~e~~~~L~~tt-FV~~-V~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm 399 (569)
T KOG1242|consen 331 IQ---KIIPTLLDALADP-SCYT----PECLDSLGATT-FVAE-VD-APSLALMVPILKRGLAERSTSIKRKTAIIIDNM 399 (569)
T ss_pred HH---HHHHHHHHHhcCc-ccch----HHHHHhhccee-eeee-ec-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHH
Confidence 21 2467778777766 2121 12223332211 0000 11 234444455554 44567788999999999
Q ss_pred ccCCchhhhHhhcCcHHHHHHHHc---cCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHH
Q 037121 531 LLSQGNHQKVLDAGTVPLLADILA---SSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYC 607 (683)
Q Consensus 531 s~~~~n~~~iv~~g~v~~Lv~lL~---~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A 607 (683)
|.--++...+. ..++.|+.-|+ .+..++++..+..+|+.+-..-... .+ .+.+|.+.+.+....+...+.-+
T Consensus 400 ~~LveDp~~la--pfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~-~f--~d~~p~l~e~~~~~k~~~~~~g~ 474 (569)
T KOG1242|consen 400 CKLVEDPKDLA--PFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEV-SF--DDLIPELSETLTSEKSLVDRSGA 474 (569)
T ss_pred HHhhcCHHHHh--hhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh-cc--cccccHHHHhhccchhhhhhHHH
Confidence 98654433332 23444444432 3457888888888887665422111 11 34466666666544344455555
Q ss_pred HHHHHHHhcCC
Q 037121 608 VSILLSLCSNA 618 (683)
Q Consensus 608 ~~~L~~L~~~~ 618 (683)
+..|..++.+.
T Consensus 475 aq~l~evl~~~ 485 (569)
T KOG1242|consen 475 AQDLSEVLAGL 485 (569)
T ss_pred hhhHHHHHhcc
Confidence 55555555544
No 141
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.43 E-value=0.58 Score=51.64 Aligned_cols=259 Identities=20% Similarity=0.215 Sum_probs=139.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchh----
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGK---- 453 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r---- 453 (683)
..++|-.+|++.-..++.++++.+..++..+. -..+. .-++..|-.+|++.....|-.|+.+|-.|+...+.+
T Consensus 265 ~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc 341 (898)
T COG5240 265 LRPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC 341 (898)
T ss_pred HHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec
Confidence 55777778877777889999988888887551 11122 234667788899999999999999999998554332
Q ss_pred ----hHHh-hc---CcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC--chhHHHhhccCCChHHHHHhhhcCCHHHHHHH
Q 037121 454 ----KVIV-ES---GGLKVILKVLKSGLSLEARQIAAATLFYLTSV--KGYRKLIGETPKAIPALVKLIEEGTDCGKKNA 523 (683)
Q Consensus 454 ----~~i~-~~---g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A 523 (683)
+.++ .. =..-++..+|+.| +.+....-...+-++..+ +..+..+ -.++..|.-++ ++-+..-
T Consensus 342 N~evEsLIsd~Nr~IstyAITtLLKTG-t~e~idrLv~~I~sfvhD~SD~FKiI~---ida~rsLsl~F----p~k~~s~ 413 (898)
T COG5240 342 NKEVESLISDENRTISTYAITTLLKTG-TEETIDRLVNLIPSFVHDMSDGFKIIA---IDALRSLSLLF----PSKKLSY 413 (898)
T ss_pred ChhHHHHhhcccccchHHHHHHHHHcC-chhhHHHHHHHHHHHHHhhccCceEEe---HHHHHHHHhhC----cHHHHHH
Confidence 1222 11 1233455556655 444333333333333221 1111111 11222222221 1122222
Q ss_pred HHHHHHcccCCch---hhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhh---CChhhHHHHH----hcC------C
Q 037121 524 VVAIFGLLLSQGN---HQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA---EDIQGTSTIL----KTS------A 587 (683)
Q Consensus 524 ~~aL~nLs~~~~n---~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa---~~~~~~~~i~----~~g------~ 587 (683)
+..|.+...+.++ +.. +|+.+..++. ..|+..+.|+..|+..- ..++....|+ +.| +
T Consensus 414 l~FL~~~L~~eGg~eFK~~-----~Vdaisd~~~--~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~ 486 (898)
T COG5240 414 LDFLGSSLLQEGGLEFKKY-----MVDAISDAME--NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPG 486 (898)
T ss_pred HHHHHHHHHhcccchHHHH-----HHHHHHHHHh--hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcc
Confidence 2333322222211 122 3444555552 34566677666666543 2233222221 111 1
Q ss_pred --hHHHHH--hhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhh
Q 037121 588 --LPVIIG--LLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFI 662 (683)
Q Consensus 588 --i~~Lv~--lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 662 (683)
+..+.. +|+ ...++..|+.+|..++.+-.+.... ..+...|-..+.+.++.+|..|..++++++...
T Consensus 487 ~yvrhIyNR~iLE---N~ivRsaAv~aLskf~ln~~d~~~~-----~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~d 557 (898)
T COG5240 487 KYVRHIYNRLILE---NNIVRSAAVQALSKFALNISDVVSP-----QSVENALKRCLNDQDDEVRDRASFLLRNMRLSD 557 (898)
T ss_pred hHHHHHHHHHHHh---hhHHHHHHHHHHHHhccCccccccH-----HHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhh
Confidence 333333 333 4468888999997777664332222 123566777888899999999999999998543
No 142
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.35 E-value=0.073 Score=61.56 Aligned_cols=251 Identities=15% Similarity=0.093 Sum_probs=142.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHh-hcCCCCHHHHHHHHHHHHhhccCCchhh
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLN-LLSSPDQCVQENAVAALLKLSKHTSGKK 454 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~-lL~s~d~~~q~~A~~aL~nLs~~~~~r~ 454 (683)
.-.+..|++.|...+.|+|..|++.+.-++..-++.+..- .++.|.. +++..+..--..+++...-++..++.-.
T Consensus 46 ~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~----~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~ 121 (1233)
T KOG1824|consen 46 RKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET----IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSS 121 (1233)
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH----HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccc
Confidence 4478899999999999999999999999886544433221 1222322 2333222222233333333343333333
Q ss_pred HHhhcCcHHHHHHHHcCC-----CCHHHHHHHHHHHHHhccCc-hhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHH
Q 037121 455 VIVESGGLKVILKVLKSG-----LSLEARQIAAATLFYLTSVK-GYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIF 528 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~~-----~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~ 528 (683)
......+++.+...|..+ ....++-.++.++..+-..- +.-.. .. .+.+..++.-+.+....+++.|+.+|.
T Consensus 122 ~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh-~~il~~l~~ql~s~R~aVrKkai~~l~ 199 (1233)
T KOG1824|consen 122 SFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FH-LSILKCLLPQLQSPRLAVRKKAITALG 199 (1233)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hH-HHHHHHHhhcccChHHHHHHHHHHHHH
Confidence 334445555555555432 12335555555555443211 10000 11 334455555556666789999999999
Q ss_pred HcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcC-ChHHHHHhh---ccCCChHHH
Q 037121 529 GLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTS-ALPVIIGLL---QTLTSRAGK 604 (683)
Q Consensus 529 nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g-~i~~Lv~lL---~~~~s~~~k 604 (683)
.|+....+ .+-.++++.|++=|.....+....--+.+|+.++.....|-- -..+ .+|.+.++. +.. +.+.+
T Consensus 200 ~la~~~~~---~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~-~h~~~ivp~v~~y~~~~e~~-dDELr 274 (1233)
T KOG1824|consen 200 HLASSCNR---DLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFG-SHLDKIVPLVADYCNKIEED-DDELR 274 (1233)
T ss_pred HHHHhcCH---HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhh-cccchhhHHHHHHhcccccC-cHHHH
Confidence 99886433 223346667777774444555555566666666643222211 1222 378888888 444 78899
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhH
Q 037121 605 EYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLT 640 (683)
Q Consensus 605 e~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll 640 (683)
|.++.+|-.+-...+.++.... ..++..+++.+
T Consensus 275 E~~lQale~fl~rcp~ei~p~~---pei~~l~l~yi 307 (1233)
T KOG1824|consen 275 EYCLQALESFLRRCPKEILPHV---PEIINLCLSYI 307 (1233)
T ss_pred HHHHHHHHHHHHhChhhhcccc---hHHHHHHHHHh
Confidence 9999999988887655543322 33455565555
No 143
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.34 E-value=0.0084 Score=42.22 Aligned_cols=40 Identities=35% Similarity=0.457 Sum_probs=35.7
Q ss_pred CchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Q 037121 450 TSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTS 490 (683)
Q Consensus 450 ~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~ 490 (683)
++++..+.+.|+++.|+.++.++ +.+++..|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence 34678888999999999999987 89999999999999973
No 144
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.24 E-value=0.13 Score=52.63 Aligned_cols=228 Identities=16% Similarity=0.127 Sum_probs=153.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCchhhHHh-hcCcHHHHHHHHcCCC-CHHHHHHHHHHHHHhccCchhHHHhhccCCChHH
Q 037121 430 SPDQCVQENAVAALLKLSKHTSGKKVIV-ESGGLKVILKVLKSGL-SLEARQIAAATLFYLTSVKGYRKLIGETPKAIPA 507 (683)
Q Consensus 430 s~d~~~q~~A~~aL~nLs~~~~~r~~i~-~~g~i~~Lv~lL~~~~-~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~ 507 (683)
.-+.-++.-|+.+|.++..+.+-|..+- +...-..++.++++.. ..+.+-+..-+++-|+...+....|-.....|.-
T Consensus 160 ~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~d 239 (432)
T COG5231 160 LIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIND 239 (432)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 3355578889999999999888876665 5556778888888732 4678889999999999988877666554567888
Q ss_pred HHHhhhcCC-HHHHHHHHHHHHHcccCC--chhhhHhhcCcHHHHHHHHccC--CChhHHHHHH---HHHHH--------
Q 037121 508 LVKLIEEGT-DCGKKNAVVAIFGLLLSQ--GNHQKVLDAGTVPLLADILASS--NRTELITDSL---AVLAN-------- 571 (683)
Q Consensus 508 Lv~lL~~~~-~~~~~~A~~aL~nLs~~~--~n~~~iv~~g~v~~Lv~lL~~~--~~~~~~~~al---~iL~n-------- 571 (683)
|+.+++... ..+.+-++..+.|++... +....+.-.|-+.+-+++|... .+.+++...= ..|.+
T Consensus 240 li~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f 319 (432)
T COG5231 240 LIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 888887643 467778899999998733 4455666667677777777432 2333322111 11110
Q ss_pred -----------hhC---------ChhhHHHHHhcCC--hHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcC
Q 037121 572 -----------LAE---------DIQGTSTILKTSA--LPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKD 629 (683)
Q Consensus 572 -----------La~---------~~~~~~~i~~~g~--i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~ 629 (683)
|+- ...+...+.+.+- +..|.++++.......-..|+.=+..+.+.. .+....+.+
T Consensus 320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~-PE~~~vl~K- 397 (432)
T COG5231 320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS-PEINAVLSK- 397 (432)
T ss_pred HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC-chHHHHHHH-
Confidence 110 1133444444443 6778888887622223344555556666665 345677777
Q ss_pred CCcHHHHHHhHhcCCHHHHHHHHHHHHHHH
Q 037121 630 PSLMNSLYSLTTDGTSQARKKARSLIKILH 659 (683)
Q Consensus 630 ~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~ 659 (683)
.|+-..+++|+.+.++++|-.|..+++.+-
T Consensus 398 yg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 398 YGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 899999999999999999999999888653
No 145
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.24 E-value=0.077 Score=49.58 Aligned_cols=119 Identities=17% Similarity=0.203 Sum_probs=92.7
Q ss_pred hhHhhcCcHHHHHHHHccCCC-----hhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCC-ChHHHHHHHHHH
Q 037121 538 QKVLDAGTVPLLADILASSNR-----TELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLT-SRAGKEYCVSIL 611 (683)
Q Consensus 538 ~~iv~~g~v~~Lv~lL~~~~~-----~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~-s~~~ke~A~~~L 611 (683)
..++..|++..|++++.++.. ..+...++.++..|..+.-.--..++...|..++.++.... +....+.|+++|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 467889999999999954442 47778899999998876543335667678999999888653 467899999999
Q ss_pred HHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHH
Q 037121 612 LSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKIL 658 (683)
Q Consensus 612 ~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l 658 (683)
-+++.+++. ....+.+ .=-++.|+..++.+++.++.+|.+++.-|
T Consensus 85 Es~Vl~S~~-ly~~V~~-evt~~~Li~hLq~~~~~iq~naiaLinAL 129 (160)
T PF11841_consen 85 ESIVLNSPK-LYQLVEQ-EVTLESLIRHLQVSNQEIQTNAIALINAL 129 (160)
T ss_pred HHHHhCCHH-HHHHHhc-cCCHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999998744 3444444 33489999999999999999999988843
No 146
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=96.20 E-value=0.002 Score=67.34 Aligned_cols=35 Identities=14% Similarity=0.461 Sum_probs=31.3
Q ss_pred CCCccCCCCcccCCCceeccCcccccHHHHHHHHH
Q 037121 277 PEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLK 311 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~ 311 (683)
.+++.||||...+++|++++|||..|+.|-..-..
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 57899999999999999999999999999775544
No 147
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.12 E-value=0.0023 Score=67.63 Aligned_cols=48 Identities=25% Similarity=0.409 Sum_probs=39.0
Q ss_pred CCCCCccCCCCcccCCCce----eccCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 275 LNPEDFRCPISLELMTDPV----TVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv----~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
.+.+--+||+|++-|-+-+ ++.|.|+|--.|+.+|+. .+||+||--..
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 4556669999999997766 357999999999999975 58999986444
No 148
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.0037 Score=60.88 Aligned_cols=54 Identities=17% Similarity=0.508 Sum_probs=46.9
Q ss_pred CCCccCCCCcccCCCce----eccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCC
Q 037121 277 PEDFRCPISLELMTDPV----TVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLP 331 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv----~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~p 331 (683)
...|.||+|.+.+.+.+ .-+|||.+|..|.++.+.. ...||+|+.++..+++++
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEe
Confidence 36799999999998764 3489999999999998875 889999999999888766
No 149
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.0053 Score=62.47 Aligned_cols=50 Identities=24% Similarity=0.472 Sum_probs=43.4
Q ss_pred CCCCCccCCCCcccCCCceec-cCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 275 LNPEDFRCPISLELMTDPVTV-STGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~-~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
-+++.-.||+|..--.+|.++ .+|..||..||-.+... +.+||+|+.+..
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPAS 346 (357)
T ss_pred CCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcch
Confidence 457788999999999888776 57999999999999996 899999987654
No 150
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.06 E-value=0.0049 Score=63.30 Aligned_cols=53 Identities=17% Similarity=0.449 Sum_probs=42.6
Q ss_pred CCCCccCCCCcccCCCc---e-eccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCC
Q 037121 276 NPEDFRCPISLELMTDP---V-TVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELL 330 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~dP---v-~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~ 330 (683)
-...|.|||++..|..- | +.+|||.|+..+|.+.- ....||.|+.++...+++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI 166 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDII 166 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEE
Confidence 46789999999999542 2 34999999999999873 356799999999877654
No 151
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.11 Score=58.04 Aligned_cols=222 Identities=16% Similarity=0.131 Sum_probs=145.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHH---hhcc---CCch-hh
Q 037121 382 LARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALL---KLSK---HTSG-KK 454 (683)
Q Consensus 382 Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~---nLs~---~~~~-r~ 454 (683)
|+.....++..++..|+..|-.|.....-.+.+ ....+.++++++..++..|+.++. |... ..++ ..
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~------Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKAC------YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHHH------HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 666667778889999999988887633322222 346688899999999988866654 4441 1111 23
Q ss_pred HHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch-----------------------------------------
Q 037121 455 VIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKG----------------------------------------- 493 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~----------------------------------------- 493 (683)
++. -.++..+.+.+... +..+|..|+.+|..+-...+
T Consensus 277 kl~-D~aF~~vC~~v~D~-sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ 354 (823)
T KOG2259|consen 277 KLK-DAAFSSVCRAVRDR-SLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWN 354 (823)
T ss_pred hhH-HHHHHHHHHHHhcC-ceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccc
Confidence 332 34677788888776 66677777766655432111
Q ss_pred ----------hHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHH
Q 037121 494 ----------YRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELIT 563 (683)
Q Consensus 494 ----------~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~ 563 (683)
....|.. .|+--++|.-|.++-.++++.|+..++.|+.+....+. .++..|+.++ ++....++.
T Consensus 355 advpsee~d~~~~siI~-sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~----~aldfLvDMf-NDE~~~VRL 428 (823)
T KOG2259|consen 355 ADVPSEEDDEEEESIIP-SGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV----RALDFLVDMF-NDEIEVVRL 428 (823)
T ss_pred ccCchhhcccccccccc-ccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH----HHHHHHHHHh-ccHHHHHHH
Confidence 1112222 45556667766666678999999999999876443211 2577899999 777788999
Q ss_pred HHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHH
Q 037121 564 DSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTA 624 (683)
Q Consensus 564 ~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~ 624 (683)
.|+..|..++.+-.. +..-++.+.+.|... ++.+++..-.+|.+ |.-...++..
T Consensus 429 ~ai~aL~~Is~~l~i-----~eeql~~il~~L~D~-s~dvRe~l~elL~~-~~~~d~~~i~ 482 (823)
T KOG2259|consen 429 KAIFALTMISVHLAI-----REEQLRQILESLEDR-SVDVREALRELLKN-ARVSDLECID 482 (823)
T ss_pred HHHHHHHHHHHHhee-----cHHHHHHHHHHHHhc-CHHHHHHHHHHHHh-cCCCcHHHHH
Confidence 999999988865222 223356777777776 88888888877654 4433334333
No 152
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.97 E-value=0.26 Score=50.67 Aligned_cols=223 Identities=13% Similarity=0.068 Sum_probs=142.0
Q ss_pred CHHHHHHHHHHHHHHHhcCchhhHHH-HhcCChHHHHhhcCC--CCHHHHHHHHHHHHhhccCCchhhHHh-hcCcHHHH
Q 037121 390 TNEEKNKAAYEIRLLAKSNIFNRSCI-VESGAIPPLLNLLSS--PDQCVQENAVAALLKLSKHTSGKKVIV-ESGGLKVI 465 (683)
Q Consensus 390 ~~~~~~~a~~~L~~La~~~~~~r~~i-~~~G~i~~Lv~lL~s--~d~~~q~~A~~aL~nLs~~~~~r~~i~-~~g~i~~L 465 (683)
++-.+.-|+..+.++.. .++.|..+ ++.-.-..++.+++. ++.++|-+.+-+++.|+.++...+.|- --..+..+
T Consensus 162 ~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 162 DFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 44467778888888876 45555544 444455677888876 788999999999999998766553332 23457778
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhccCc--hhHHHhhccCCChHHHHHhhhcC---CHHHHHHHHHH---H----HHccc-
Q 037121 466 LKVLKSGLSLEARQIAAATLFYLTSVK--GYRKLIGETPKAIPALVKLIEEG---TDCGKKNAVVA---I----FGLLL- 532 (683)
Q Consensus 466 v~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~A~~a---L----~nLs~- 532 (683)
+.+.+......+.+.+++++.|++.-. ..-...+. -|-+..-|.+|..+ +.+.+.+.-.. | ..||+
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f 319 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 888877545567788999999998722 22333333 34344445554432 22222211111 0 01111
Q ss_pred --------------C---------CchhhhHhhc--CcHHHHHHHHccCCChhHHHHHHHHHHHhh-CChhhHHHHHhcC
Q 037121 533 --------------S---------QGNHQKVLDA--GTVPLLADILASSNRTELITDSLAVLANLA-EDIQGTSTILKTS 586 (683)
Q Consensus 533 --------------~---------~~n~~~iv~~--g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa-~~~~~~~~i~~~g 586 (683)
. ..|...+.+. .++..|.++|+...+.....-|+.=+..+. ..|+++..+...|
T Consensus 320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg 399 (432)
T COG5231 320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG 399 (432)
T ss_pred HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence 1 1233444433 367888899844333334455666666665 5899999999999
Q ss_pred ChHHHHHhhccCCChHHHHHHHHHHHHHh
Q 037121 587 ALPVIIGLLQTLTSRAGKEYCVSILLSLC 615 (683)
Q Consensus 587 ~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~ 615 (683)
+=..+++++.+. ++++|-.|+.++..+.
T Consensus 400 ~k~~im~L~nh~-d~~VkfeAl~a~q~~i 427 (432)
T COG5231 400 VKEIIMNLINHD-DDDVKFEALQALQTCI 427 (432)
T ss_pred hHHHHHHHhcCC-CchhhHHHHHHHHHHH
Confidence 999999999998 9999999999975543
No 153
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.91 E-value=0.61 Score=46.36 Aligned_cols=182 Identities=15% Similarity=0.153 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcC----CCCHHHHHHHHHHHHHhccCchh-HHHhhccCCChHH
Q 037121 433 QCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKS----GLSLEARQIAAATLFYLTSVKGY-RKLIGETPKAIPA 507 (683)
Q Consensus 433 ~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~----~~~~e~~~~Aa~~L~~Ls~~~~~-~~~i~~~~g~i~~ 507 (683)
..-.-+|+..|.-++.+++.|..++.+-.--.+-.+|.. ....-.|-.+.+++..|..+++. .....-..++||.
T Consensus 93 snRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred cchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 334567888888899999999999987654445555543 21345788999999999886653 3333334899999
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhc----C----cHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhH
Q 037121 508 LVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDA----G----TVPLLADILASSNRTELITDSLAVLANLAEDIQGT 579 (683)
Q Consensus 508 Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~----g----~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~ 579 (683)
.++.+..|+...+.-|..++..+..++.+-..+.+. - .+..++.-|.+.++..+...++.+..+|+.++..|
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999999888877653322211 1 23334444436688999999999999999999999
Q ss_pred HHHHhcC--Ch--HHHHHhhccCCChHHHHHHHHHHHHHhc
Q 037121 580 STILKTS--AL--PVIIGLLQTLTSRAGKEYCVSILLSLCS 616 (683)
Q Consensus 580 ~~i~~~g--~i--~~Lv~lL~~~~s~~~ke~A~~~L~~L~~ 616 (683)
.++...- .+ .....++++ ++..|..-...+.++|.
T Consensus 253 ~aL~~clPd~Lrd~tfs~~l~~--D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 253 AALRSCLPDQLRDGTFSLLLKD--DPETKQWLQQLLKNLCT 291 (293)
T ss_pred HHHHhhCcchhccchHHHHHhc--ChhHHHHHHHHHHHhcc
Confidence 8886432 11 123334544 45566665556666664
No 154
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.89 E-value=0.28 Score=56.83 Aligned_cols=168 Identities=20% Similarity=0.226 Sum_probs=111.1
Q ss_pred hcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHH
Q 037121 386 LFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVI 465 (683)
Q Consensus 386 L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~L 465 (683)
|.+++...|+.|++.+-.-...+...- -..|-+++...+.|.+++.-.---|.+.+...+....+ +++.+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti 97 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTI 97 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHH
Confidence 556667777777775544333232211 22355666666778887776666666666655422222 35666
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCc
Q 037121 466 LKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGT 545 (683)
Q Consensus 466 v~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~ 545 (683)
.+=+++. ++..|..|..++..|= ....++ .+++++.+++.++++.+++.|+.+++++=.. ++....+.|.
T Consensus 98 ~kDl~d~-N~~iR~~AlR~ls~l~----~~el~~---~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~ 167 (757)
T COG5096 98 QKDLQDP-NEEIRGFALRTLSLLR----VKELLG---NIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGL 167 (757)
T ss_pred HhhccCC-CHHHHHHHHHHHHhcC----hHHHHH---HHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccH
Confidence 6666677 8888888888877762 222332 3778888888888888888888888887543 3445566677
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHhhC
Q 037121 546 VPLLADILASSNRTELITDSLAVLANLAE 574 (683)
Q Consensus 546 v~~Lv~lL~~~~~~~~~~~al~iL~nLa~ 574 (683)
+..+..++ .+.++.+...|+..|..+..
T Consensus 168 ~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 168 IDILKELV-ADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHHh-hCCCchHHHHHHHHHHHhch
Confidence 88888887 77788888888888887753
No 155
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.86 E-value=0.012 Score=44.80 Aligned_cols=55 Identities=25% Similarity=0.169 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHc
Q 037121 475 LEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGL 530 (683)
Q Consensus 475 ~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 530 (683)
+.+|..|+++|.+++........-.. ..+++.|+.+|+++++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 36799999999998876554444444 67999999999999999999999999875
No 156
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=95.85 E-value=0.0052 Score=64.70 Aligned_cols=51 Identities=27% Similarity=0.482 Sum_probs=45.5
Q ss_pred ccCCCCcccCCCceec-cCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCC
Q 037121 280 FRCPISLELMTDPVTV-STGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLP 331 (683)
Q Consensus 280 f~CpIc~~~m~dPv~~-~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~p 331 (683)
+.|.|++++-++||+- .+||.|+|+-|++++.+ ..+||+++++++..++++
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence 4799999999999986 49999999999999998 789999999998766654
No 157
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.3 Score=55.93 Aligned_cols=258 Identities=16% Similarity=0.184 Sum_probs=150.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHH
Q 037121 377 LMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVI 456 (683)
Q Consensus 377 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i 456 (683)
..+..|-++|.+.+-..+.-|+..|......++..-.. . =..++++|++.|..++..|+..+..|... .|-..|
T Consensus 313 lainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqr---H--r~tIleCL~DpD~SIkrralELs~~lvn~-~Nv~~m 386 (866)
T KOG1062|consen 313 LAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQR---H--RSTILECLKDPDVSIKRRALELSYALVNE-SNVRVM 386 (866)
T ss_pred HHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHH---H--HHHHHHHhcCCcHHHHHHHHHHHHHHhcc-ccHHHH
Confidence 34566667777777777888887777776654432110 1 13578899999999999999999888743 443333
Q ss_pred hhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC--chhHHHhhc------------cCCChHHHHHhhhcCCHHHHHH
Q 037121 457 VESGGLKVILKVLKSGLSLEARQIAAATLFYLTSV--KGYRKLIGE------------TPKAIPALVKLIEEGTDCGKKN 522 (683)
Q Consensus 457 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~------------~~g~i~~Lv~lL~~~~~~~~~~ 522 (683)
+..++.+|.+. +.+.+...+.-+..++.. +++++.|-. ...++..|+.++.++.++.-+.
T Consensus 387 -----v~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y 460 (866)
T KOG1062|consen 387 -----VKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEY 460 (866)
T ss_pred -----HHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhH
Confidence 45678888888 889999999999998763 334443321 1233444444444433333333
Q ss_pred HHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhh----C--ChhhHHHHHhcCChHHHHHhhc
Q 037121 523 AVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA----E--DIQGTSTILKTSALPVIIGLLQ 596 (683)
Q Consensus 523 A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa----~--~~~~~~~i~~~g~i~~Lv~lL~ 596 (683)
+...|+.-..... ++ .-..+.+..-|.++|+--. . +.+.-..+-+...+..|.+++.
T Consensus 461 ~~~rLy~a~~~~~----------------~~-~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~ 523 (866)
T KOG1062|consen 461 AVLRLYLALSEDT----------------LL-DISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLM 523 (866)
T ss_pred HHHHHHHHHhhhh----------------hh-hhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHH
Confidence 3333332211110 00 1123334445555555322 1 1122222334445677777665
Q ss_pred cC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 037121 597 TL-TSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFIETCSSGVE 670 (683)
Q Consensus 597 ~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~~~~~~~~ 670 (683)
+. .+...|.+|+.+|..|...-... ...+ -..+.++..+-+...|++|.++=.++.++...+.+=..
T Consensus 524 ~~~s~~~tk~yal~Al~KLSsr~~s~-~~ri------~~lI~~~~~s~~~elQQRa~E~~~l~~~~~~lr~siLe 591 (866)
T KOG1062|consen 524 SHSSDSTTKGYALTALLKLSSRFHSS-SERI------KQLISSYKSSLDTELQQRAVEYNALFAKDKHLRKSILE 591 (866)
T ss_pred hccchHHHHHHHHHHHHHHHhhcccc-HHHH------HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 43 26779999999999998864221 1111 12233345556888999999988888777665544443
No 158
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.78 E-value=0.36 Score=56.74 Aligned_cols=229 Identities=18% Similarity=0.154 Sum_probs=150.1
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHhhccCCc---hhhHH-hhcCcHHHHHHHHcCCCCHHHHHHHHHHHHH-hccCchhH
Q 037121 421 IPPLLNLLSSPDQCVQENAVAALLKLSKHTS---GKKVI-VESGGLKVILKVLKSGLSLEARQIAAATLFY-LTSVKGYR 495 (683)
Q Consensus 421 i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~---~r~~i-~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~-Ls~~~~~~ 495 (683)
+|..++.|-+ |.+-+.+|.-|+..=+ =...+ ..-|++|.++++|++. ..|+|..-+.+=.. |+.++.+.
T Consensus 474 LPiVLQVLLS-----QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~-a~ELrpiLVFIWAKILAvD~SCQ 547 (1387)
T KOG1517|consen 474 LPIVLQVLLS-----QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSS-ARELRPILVFIWAKILAVDPSCQ 547 (1387)
T ss_pred cchHHHHHHH-----HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccc-hHhhhhhHHHHHHHHHhcCchhH
Confidence 3445554433 4444555555543222 12223 3789999999999998 77888766655544 45555566
Q ss_pred HHhhccCCChHHHHHhhhc-C--CHHHHHHHHHHHHHcccC-CchhhhHhhcCcHHHHHHHHccC-CChhHHHHHHHHHH
Q 037121 496 KLIGETPKAIPALVKLIEE-G--TDCGKKNAVVAIFGLLLS-QGNHQKVLDAGTVPLLADILASS-NRTELITDSLAVLA 570 (683)
Q Consensus 496 ~~i~~~~g~i~~Lv~lL~~-~--~~~~~~~A~~aL~nLs~~-~~n~~~iv~~g~v~~Lv~lL~~~-~~~~~~~~al~iL~ 570 (683)
..++. .++-...+..|.. . +++-+.-|+-.|.-++.+ .-+.....+.+.+..-+..| ++ +.+-++.=++-+|+
T Consensus 548 ~dLvK-e~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~l-nd~~~pLLrQW~~icLG 625 (1387)
T KOG1517|consen 548 ADLVK-ENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHL-NDDPEPLLRQWLCICLG 625 (1387)
T ss_pred HHHHh-ccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHh-cCCccHHHHHHHHHHHH
Confidence 66666 5555555555554 2 346677778888888765 33567778889999889999 55 35667777888888
Q ss_pred HhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCC---hHHHHHHH----------hcCCCcHH--
Q 037121 571 NLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNA---REEVTASL----------AKDPSLMN-- 634 (683)
Q Consensus 571 nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~---~~~~~~~l----------~~~~g~i~-- 634 (683)
.|=. .++.|-.=.+.++...|+.+|... .+++|..|+.+|..+-.++ -++....+ ......++
T Consensus 626 ~LW~d~~~Arw~G~r~~AhekL~~~LsD~-vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~ 704 (1387)
T KOG1517|consen 626 RLWEDYDEARWSGRRDNAHEKLILLLSDP-VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKG 704 (1387)
T ss_pred HHhhhcchhhhccccccHHHHHHHHhcCc-cHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhh
Confidence 8854 455555556777899999999887 8999999999999888753 11111111 00112233
Q ss_pred --HHHHhHhcCCHHHHHHHHHHHHHH
Q 037121 635 --SLYSLTTDGTSQARKKARSLIKIL 658 (683)
Q Consensus 635 --~L~~Ll~~g~~~~k~~A~~lL~~l 658 (683)
.|+.+++.|++-.+.+..-.+..+
T Consensus 705 ~~~ll~~vsdgsplvr~ev~v~ls~~ 730 (1387)
T KOG1517|consen 705 LMSLLALVSDGSPLVRTEVVVALSHF 730 (1387)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHH
Confidence 788889999999988855555433
No 159
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.76 E-value=0.44 Score=47.35 Aligned_cols=149 Identities=12% Similarity=0.098 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC-----CCHHHHHHHHHHHHhhccCCch--hhHHhhcCcHH
Q 037121 391 NEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS-----PDQCVQENAVAALLKLSKHTSG--KKVIVESGGLK 463 (683)
Q Consensus 391 ~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-----~d~~~q~~A~~aL~nLs~~~~~--r~~i~~~g~i~ 463 (683)
..-.+.|+..++.++. .++.|..|..+-.--.|-.+|.. +..-++..++++++.|.++++. -..+...++++
T Consensus 93 snRVcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 93 SNRVCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred cchHHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 3445778888888887 57888888877654456666643 4577899999999999877654 44455899999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHh-------hccCCChHHH-HHhhhcCCHHHHHHHHHHHHHcccCCc
Q 037121 464 VILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLI-------GETPKAIPAL-VKLIEEGTDCGKKNAVVAIFGLLLSQG 535 (683)
Q Consensus 464 ~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i-------~~~~g~i~~L-v~lL~~~~~~~~~~A~~aL~nLs~~~~ 535 (683)
..++.+..| +...+..|+.++..+-.++..-.-| ......+..+ ..+.+.++.+..++++....+|+.++.
T Consensus 172 lCLrime~G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr 250 (293)
T KOG3036|consen 172 LCLRIMESG-SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR 250 (293)
T ss_pred HHHHHHhcc-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH
Confidence 999999999 8888999999988887766432211 1112223323 334456788999999999999999887
Q ss_pred hhhhHh
Q 037121 536 NHQKVL 541 (683)
Q Consensus 536 n~~~iv 541 (683)
.+..+.
T Consensus 251 ar~aL~ 256 (293)
T KOG3036|consen 251 ARAALR 256 (293)
T ss_pred HHHHHH
Confidence 665543
No 160
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=0.66 Score=52.90 Aligned_cols=272 Identities=13% Similarity=0.097 Sum_probs=161.0
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHHHhcCchhhHHHHh-cCChHHHHhhcCC--CCHHHHHHHHHHHHhhccCC--
Q 037121 377 LMSRFLARRLFFGTN-EEKNKAAYEIRLLAKSNIFNRSCIVE-SGAIPPLLNLLSS--PDQCVQENAVAALLKLSKHT-- 450 (683)
Q Consensus 377 ~~i~~Lv~~L~s~~~-~~~~~a~~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s--~d~~~q~~A~~aL~nLs~~~-- 450 (683)
.++..|+.......+ ..+..++..|..+|.+-+.. ..... +.++-.++.-... ++..++..|+.+|.|--..-
T Consensus 129 ~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe-vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~ 207 (859)
T KOG1241|consen 129 ELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE-VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKA 207 (859)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 356667777665544 47788899999999754322 22222 2344455554433 67889999999999854222
Q ss_pred -----chhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC-chhHHHhhccCCChHHHHHhhhcCCHHHHHHHH
Q 037121 451 -----SGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSV-KGYRKLIGETPKAIPALVKLIEEGTDCGKKNAV 524 (683)
Q Consensus 451 -----~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~ 524 (683)
.+|..|+ ..+.+.-.++ +.+++..|...|..+... -++-..-.. ...+..-+.-++++++++...+.
T Consensus 208 nF~~E~ern~iM-----qvvcEatq~~-d~~i~~aa~~ClvkIm~LyY~~m~~yM~-~alfaitl~amks~~deValQai 280 (859)
T KOG1241|consen 208 NFNNEMERNYIM-----QVVCEATQSP-DEEIQVAAFQCLVKIMSLYYEFMEPYME-QALFAITLAAMKSDNDEVALQAI 280 (859)
T ss_pred hhccHhhhceee-----eeeeecccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCcHHHHHHHH
Confidence 1233333 3333344445 778888888888777542 222222222 23344445556777887777776
Q ss_pred HHHHHcccCCch----hhhH---------------hhcCcHHHHHHHHcc-CCC-----hhHHHHHHHHHHHhhCChhhH
Q 037121 525 VAIFGLLLSQGN----HQKV---------------LDAGTVPLLADILAS-SNR-----TELITDSLAVLANLAEDIQGT 579 (683)
Q Consensus 525 ~aL~nLs~~~~n----~~~i---------------v~~g~v~~Lv~lL~~-~~~-----~~~~~~al~iL~nLa~~~~~~ 579 (683)
.-=.++|...-. -..+ .-.+++|.|+++|.. +++ =.....|-.+|..++..- .
T Consensus 281 EFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~--~ 358 (859)
T KOG1241|consen 281 EFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV--G 358 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh--c
Confidence 666666643211 0111 112678889999853 211 123344444454444310 0
Q ss_pred HHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHH
Q 037121 580 STILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILH 659 (683)
Q Consensus 580 ~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~ 659 (683)
..|+. .++|-+-+-+++. +-+.++.|+-++..+-.+........++ .+++|.++.+..+..-.+|+.++|.+..+.
T Consensus 359 D~Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV--~qalp~ii~lm~D~sl~VkdTaAwtlgrI~ 434 (859)
T KOG1241|consen 359 DDIVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIV--IQALPSIINLMSDPSLWVKDTAAWTLGRIA 434 (859)
T ss_pred ccchh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHH--hhhhHHHHHHhcCchhhhcchHHHHHHHHH
Confidence 12222 2334444455555 6778999999988887776566566666 577999999999877788888999887666
Q ss_pred Hhh
Q 037121 660 KFI 662 (683)
Q Consensus 660 ~~~ 662 (683)
++-
T Consensus 435 d~l 437 (859)
T KOG1241|consen 435 DFL 437 (859)
T ss_pred hhc
Confidence 653
No 161
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.74 E-value=0.075 Score=51.75 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=92.8
Q ss_pred cCCHHHHHHHHHHHHHcccCCchhhhHhhc----------------CcHHHHHHHHcc-----CCChhHHHHHHHHHHHh
Q 037121 514 EGTDCGKKNAVVAIFGLLLSQGNHQKVLDA----------------GTVPLLADILAS-----SNRTELITDSLAVLANL 572 (683)
Q Consensus 514 ~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~----------------g~v~~Lv~lL~~-----~~~~~~~~~al~iL~nL 572 (683)
+.+......++..|.||+..++.+..+++. .++..|+..+.. .+...-......+|.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 334455667888899999988877655443 366778888744 23456678899999999
Q ss_pred hCChhhHHHHHhcC--C--hHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhc-C-CCcHHHHHHhHhcCC
Q 037121 573 AEDIQGTSTILKTS--A--LPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAK-D-PSLMNSLYSLTTDGT 644 (683)
Q Consensus 573 a~~~~~~~~i~~~g--~--i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~-~-~g~i~~L~~Ll~~g~ 644 (683)
+..++||..+++.. . +..|+-++++. +..-|.-+++++.|+|-... ....+.. + .+++|.|+--+. |.
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~--~H~~LL~~~~~~iLp~LLlPLa-Gp 159 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTD--SHEWLLSDDEVDILPYLLLPLA-GP 159 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHh--HHHHhcCchhhhhHHHHHhhcc-CC
Confidence 99999999998665 3 66777777877 88889999999999998753 2344444 2 467777776665 53
No 162
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.62 E-value=0.027 Score=42.79 Aligned_cols=55 Identities=22% Similarity=0.083 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 037121 433 QCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYL 488 (683)
Q Consensus 433 ~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~L 488 (683)
+.++..|+++|++++........-....+++.|+.+|.++ +..+|.+|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 3688999999999987776655556677899999999887 779999999999875
No 163
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.60 E-value=0.049 Score=43.99 Aligned_cols=67 Identities=18% Similarity=0.069 Sum_probs=61.1
Q ss_pred HHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcC
Q 037121 520 KKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTS 586 (683)
Q Consensus 520 ~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g 586 (683)
.+.|+||+.++++.+.+...+-+.++++.++++...++...++--|..+|..++.+.++.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 5789999999999988888888889999999999778888999999999999999999999887765
No 164
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.0036 Score=46.11 Aligned_cols=45 Identities=22% Similarity=0.225 Sum_probs=37.8
Q ss_pred ccCCCCcccCCCceeccCccc-ccHHHHHHHHHhCCCCCCCCCccc
Q 037121 280 FRCPISLELMTDPVTVSTGQT-YDRSSIQKWLKAGNMLCPKTGEKL 324 (683)
Q Consensus 280 f~CpIc~~~m~dPv~~~cght-~~r~cI~~w~~~~~~~CP~c~~~l 324 (683)
-.|.||.+--.|.|+..|||. .|-.|=.+.+..++..||.|+.++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 469999999999999999994 677787777777789999999764
No 165
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.0065 Score=63.55 Aligned_cols=60 Identities=28% Similarity=0.566 Sum_probs=48.0
Q ss_pred CccCCCCcccCCCce-----eccCcccccHHHHHHHHHh-CCCCCCCCCcccCCCCCCCcHHHHHH
Q 037121 279 DFRCPISLELMTDPV-----TVSTGQTYDRSSIQKWLKA-GNMLCPKTGEKLTNTELLPNTTLKKL 338 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv-----~~~cght~~r~cI~~w~~~-~~~~CP~c~~~l~~~~l~pn~~l~~~ 338 (683)
-.+||||++-..-|+ ++.|||-|-..||++|+.. -...||.|.-....+.+.+-++++..
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q 69 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ 69 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence 358999999887774 4579999999999999953 23579999887777788887777654
No 166
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.084 Score=58.89 Aligned_cols=224 Identities=13% Similarity=0.127 Sum_probs=135.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCc------hhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccC--
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNI------FNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKH-- 449 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~------~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~-- 449 (683)
.....++.++....+++..|+..+..++...+ .+...+. ..+...+...+.+....++..|.++|+.+-..
T Consensus 235 ~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe 313 (823)
T KOG2259|consen 235 CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE 313 (823)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH
Confidence 45666777777777777777776666554331 1111111 12334455555555555555555555544110
Q ss_pred -------------------------------------------------CchhhHHhhcCcHHHHHHHHcCCCCHHHHHH
Q 037121 450 -------------------------------------------------TSGKKVIVESGGLKVILKVLKSGLSLEARQI 480 (683)
Q Consensus 450 -------------------------------------------------~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~ 480 (683)
+..-..|+..|+-.++|.=|..+ -.|+|++
T Consensus 314 e~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~A 392 (823)
T KOG2259|consen 314 EIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRA 392 (823)
T ss_pred HHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHH-HHHHHHH
Confidence 01123455667777778777777 6799999
Q ss_pred HHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChh
Q 037121 481 AAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTE 560 (683)
Q Consensus 481 Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~ 560 (683)
|.+.+..|+.+... .. ..++..|+++++++...++..|..+|..++.+ ..++...++.++..| .+.+.+
T Consensus 393 AV~Sl~~La~ssP~---FA--~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~-----l~i~eeql~~il~~L-~D~s~d 461 (823)
T KOG2259|consen 393 AVASLCSLATSSPG---FA--VRALDFLVDMFNDEIEVVRLKAIFALTMISVH-----LAIREEQLRQILESL-EDRSVD 461 (823)
T ss_pred HHHHHHHHHcCCCC---cH--HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-----heecHHHHHHHHHHH-HhcCHH
Confidence 99999999874321 11 34788999999998889999999999988876 334455677788888 667778
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChH
Q 037121 561 LITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNARE 620 (683)
Q Consensus 561 ~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~ 620 (683)
+++..-.+|.+.--.......+ ++..|++-|.. -|.-+...++++..+..+.+.
T Consensus 462 vRe~l~elL~~~~~~d~~~i~m----~v~~lL~~L~k--yPqDrd~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 462 VREALRELLKNARVSDLECIDM----CVAHLLKNLGK--YPQDRDEILRCMGRIGQNHRR 515 (823)
T ss_pred HHHHHHHHHHhcCCCcHHHHHH----HHHHHHHHhhh--CCCCcHHHHHHHHHHhccChh
Confidence 8777666666543222111111 12233333322 344555666677777766533
No 167
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.48 E-value=0.067 Score=46.18 Aligned_cols=64 Identities=16% Similarity=0.296 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHh--hccCCChHHHHHHHHHHHHHhcCChHHHHHHH
Q 037121 561 LITDSLAVLANLAE-DIQGTSTILKTSALPVIIGL--LQTLTSRAGKEYCVSILLSLCSNAREEVTASL 626 (683)
Q Consensus 561 ~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~l--L~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l 626 (683)
++...+.+|+||+. ++.....+.+.||++.++.. ++.. .|-.+|+|+.++.+||.++.+ .++.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~-nP~irEwai~aiRnL~e~n~e-NQ~~I 68 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDH-NPFIREWAIFAIRNLCEGNPE-NQEFI 68 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcc-cHHHHHHHHHHHHHHHhCCHH-HHHHH
Confidence 45678899999985 78899999999999999983 3444 889999999999999998743 34433
No 168
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.47 E-value=0.41 Score=48.31 Aligned_cols=195 Identities=16% Similarity=0.145 Sum_probs=128.7
Q ss_pred CHHHHHHHHHHHHHHHhcCchhhHHHHhc-CChHHHHh-------hcCCCC-----HHHHHHHHHHHHhhccCCchhhHH
Q 037121 390 TNEEKNKAAYEIRLLAKSNIFNRSCIVES-GAIPPLLN-------LLSSPD-----QCVQENAVAALLKLSKHTSGKKVI 456 (683)
Q Consensus 390 ~~~~~~~a~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~-------lL~s~d-----~~~q~~A~~aL~nLs~~~~~r~~i 456 (683)
+++.+..|+.+|..--+..++--..+-.. |.+..|++ .|+.+. ..-.-+|+..|.-++.+++-|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 56778888755443322223333334343 77776655 333322 123456778888889999999999
Q ss_pred hhcCcHHHHHHHHcCCC----CHHHHHHHHHHHHHhccCchh-HHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcc
Q 037121 457 VESGGLKVILKVLKSGL----SLEARQIAAATLFYLTSVKGY-RKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLL 531 (683)
Q Consensus 457 ~~~g~i~~Lv~lL~~~~----~~e~~~~Aa~~L~~Ls~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 531 (683)
+++...-.|.-+|+... -...|-.+.+++..|...++. .....-..+.+|..++.+..|+.-.+.-|.-.+..+.
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99887666666665421 234678889999999875432 2223334899999999999999999999999999998
Q ss_pred cCCchhhhHhhc--------CcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHh
Q 037121 532 LSQGNHQKVLDA--------GTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILK 584 (683)
Q Consensus 532 ~~~~n~~~iv~~--------g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~ 584 (683)
.++.+...+.+. .++..++.-+...+++.+....+.+-..|+.++.++.++.+
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 887764333222 24445555554678999999999999999999999998864
No 169
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.01 Score=59.71 Aligned_cols=49 Identities=18% Similarity=0.362 Sum_probs=39.7
Q ss_pred cCCCCc-ccCCCcee----ccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCC
Q 037121 281 RCPISL-ELMTDPVT----VSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTEL 329 (683)
Q Consensus 281 ~CpIc~-~~m~dPv~----~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l 329 (683)
.||+|. +.+..|-+ -+|||+.|.+|....|..|...||.|+..+....+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 499987 45556632 28999999999999999999999999988765544
No 170
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.44 E-value=0.044 Score=48.59 Aligned_cols=69 Identities=22% Similarity=0.185 Sum_probs=59.0
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhh
Q 037121 378 MSRFLARRLF-FGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKL 446 (683)
Q Consensus 378 ~i~~Lv~~L~-s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nL 446 (683)
.++.|++.|. +.++....-|+..|..+++..|..|..+.+.|+-..+..++.++|++++.+|+.++..+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 6788999994 44667778899999999999999999998899999999999999999999999998765
No 171
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=0.51 Score=56.34 Aligned_cols=218 Identities=22% Similarity=0.271 Sum_probs=130.4
Q ss_pred CCCCHHHHHHHHHHHHhhccCCchhhHHh--hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC--chhHHHhhccCCC
Q 037121 429 SSPDQCVQENAVAALLKLSKHTSGKKVIV--ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSV--KGYRKLIGETPKA 504 (683)
Q Consensus 429 ~s~d~~~q~~A~~aL~nLs~~~~~r~~i~--~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~~g~ 504 (683)
++.+..+|..+..+|..++..+....... -......+..-+++. +..++..+..+|..|-.. .+....+.. .
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~-~~~~~~~rl~~L~~L~~~~~~e~~~~i~k---~ 739 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSS-SSPAQASRLKCLKRLLKLLSAEHCDLIPK---L 739 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccHHHHHHHHH---H
Confidence 34578999999999999987743321111 112344444455544 455666666666555432 234444433 5
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcC------cHHHHHHHHcc---CCChhHHHHHHHHHHHhhCC
Q 037121 505 IPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAG------TVPLLADILAS---SNRTELITDSLAVLANLAED 575 (683)
Q Consensus 505 i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g------~v~~Lv~lL~~---~~~~~~~~~al~iL~nLa~~ 575 (683)
||.++=.++..+...++.|..+|.+++. .....+.| +|...+.+|.. .....+...-+-.+..+...
T Consensus 740 I~EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 740 IPEVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 5555555577788899999999998873 11222222 55555555521 12222222223333333321
Q ss_pred hhhHHHHHhcCC----hHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHH
Q 037121 576 IQGTSTILKTSA----LPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKA 651 (683)
Q Consensus 576 ~~~~~~i~~~g~----i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A 651 (683)
. ..+++.+. +..+..+|.++ ++.....|++.+..++..-++.+...-. ..+++.+..++++++-..|.++
T Consensus 816 ~---~~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~--~~LL~sll~ls~d~k~~~r~Kv 889 (1176)
T KOG1248|consen 816 F---KNILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHL--EELLPSLLALSHDHKIKVRKKV 889 (1176)
T ss_pred H---hccccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhH--HHHHHHHHHHHHhhhHHHHHHH
Confidence 1 11222222 34445566666 8999999999999999887766555444 3479999999999999999988
Q ss_pred HHHHHHHHH
Q 037121 652 RSLIKILHK 660 (683)
Q Consensus 652 ~~lL~~l~~ 660 (683)
.-++..|-+
T Consensus 890 r~LlekLir 898 (1176)
T KOG1248|consen 890 RLLLEKLIR 898 (1176)
T ss_pred HHHHHHHHH
Confidence 888875543
No 172
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.0079 Score=64.15 Aligned_cols=50 Identities=14% Similarity=0.396 Sum_probs=39.5
Q ss_pred CCCCccCCCCcccCC-----------------CceeccCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 276 NPEDFRCPISLELMT-----------------DPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~-----------------dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
....--|+||+.... +-+.+||.|.|-+.|+++|.+.-...||+|+.+++
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 455667999986542 23456999999999999999975679999998875
No 173
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.40 E-value=1.1 Score=51.34 Aligned_cols=274 Identities=14% Similarity=0.153 Sum_probs=157.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIV 457 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~ 457 (683)
..+++=+.+++.+|..+..|+-.+......-...+..-...+++|.++.+..++..-++..+.++|+.++..-. +.+.
T Consensus 365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~--e~~~ 442 (859)
T KOG1241|consen 365 VLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP--EAII 442 (859)
T ss_pred hHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch--hhcc
Confidence 45666668899999999999999999888766666666678899999999998888899999999999986544 2233
Q ss_pred ----hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch--hHHHhhcc---CCChHHHHH-hhh-----cCC-HHHHH
Q 037121 458 ----ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKG--YRKLIGET---PKAIPALVK-LIE-----EGT-DCGKK 521 (683)
Q Consensus 458 ----~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~i~~~---~g~i~~Lv~-lL~-----~~~-~~~~~ 521 (683)
..+.++.++.-|.+ .+.+-.+++|++.+|+..-. .... +.. ....+.++. |++ +++ ...+.
T Consensus 443 n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA~~s~-~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~ 519 (859)
T KOG1241|consen 443 NQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEAAVSN-GQTDPATPFYEAIIGSLLKVTDRADGNQSNLRS 519 (859)
T ss_pred cHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHhccCC-CCCCccchhHHHHHHHHHhhccccccchhhHHH
Confidence 23344444444443 35678899999999984211 1111 110 113333333 222 122 35677
Q ss_pred HHHHHHHHcccCCc-hhhhHhhcCcHHHHHH----HHc----cCC----ChhHHHHHHHHHHHhhC-ChhhHHHHHhcCC
Q 037121 522 NAVVAIFGLLLSQG-NHQKVLDAGTVPLLAD----ILA----SSN----RTELITDSLAVLANLAE-DIQGTSTILKTSA 587 (683)
Q Consensus 522 ~A~~aL~nLs~~~~-n~~~iv~~g~v~~Lv~----lL~----~~~----~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~ 587 (683)
.|-.||..|..+.. .+.-++. +.....+. .++ +.. -.+++..-+.+|..+-. ....+..+.+ ..
T Consensus 520 AAYeALmElIk~st~~vy~~v~-~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~i 597 (859)
T KOG1241|consen 520 AAYEALMELIKNSTDDVYPMVQ-KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QI 597 (859)
T ss_pred HHHHHHHHHHHcCcHHHHHHHH-HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HH
Confidence 88888888876543 3333322 22222222 221 111 12445555555555532 1111111111 23
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCH-HHHHHHHHHHHHHHHh
Q 037121 588 LPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTS-QARKKARSLIKILHKF 661 (683)
Q Consensus 588 i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~-~~k~~A~~lL~~l~~~ 661 (683)
+..++++++++.+..+.|.|..+...|..+-+....+-+ +.+.|-|..=+++.++ .+.-.|..+..-+.+.
T Consensus 598 M~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym---~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~ra 669 (859)
T KOG1241|consen 598 MGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM---PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARA 669 (859)
T ss_pred HHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH---HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 456777887754666788777777766665444433332 2345555555555433 3444455555555543
No 174
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.0037 Score=61.70 Aligned_cols=55 Identities=20% Similarity=0.408 Sum_probs=43.3
Q ss_pred CCCccCCCCcccCCCce----------eccCcccccHHHHHHHHHhCC-CCCCCCCcccCCCCCCC
Q 037121 277 PEDFRCPISLELMTDPV----------TVSTGQTYDRSSIQKWLKAGN-MLCPKTGEKLTNTELLP 331 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv----------~~~cght~~r~cI~~w~~~~~-~~CP~c~~~l~~~~l~p 331 (683)
.++-.|.+|++-+.+-+ .++|+|.|-..||..|+--|. .+||-|++..+.+....
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfs 287 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFS 287 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhcc
Confidence 35678999998776554 579999999999999998765 58999998776544433
No 175
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.31 E-value=0.39 Score=51.91 Aligned_cols=179 Identities=18% Similarity=0.222 Sum_probs=116.6
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhccCch----hHHHhhccCCChHHHHHhhhcCC-------HHHHHHHHHHHHHcccCC
Q 037121 466 LKVLKSGLSLEARQIAAATLFYLTSVKG----YRKLIGETPKAIPALVKLIEEGT-------DCGKKNAVVAIFGLLLSQ 534 (683)
Q Consensus 466 v~lL~~~~~~e~~~~Aa~~L~~Ls~~~~----~~~~i~~~~g~i~~Lv~lL~~~~-------~~~~~~A~~aL~nLs~~~ 534 (683)
..++... +.+-+-.|.-....++.+++ +++.+.. .-+.+.+=+++.+++ ..-+.-++..|...|..+
T Consensus 17 ~~L~~~k-~D~e~fAaLllVTK~vK~~Di~a~~kk~vfe-AVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 17 LKLLKGK-RDEERFAALLLVTKFVKNDDIVALNKKLVFE-AVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHhccc-ChHHHHHHHHHHHHHhcccchhhhhhhhHHH-HhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 3344433 55555555555566666543 6677777 667788888887632 234557788889999988
Q ss_pred ch--hhhHhhcCcHHHHHHHHccCCChh------HHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHH
Q 037121 535 GN--HQKVLDAGTVPLLADILASSNRTE------LITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEY 606 (683)
Q Consensus 535 ~n--~~~iv~~g~v~~Lv~lL~~~~~~~------~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~ 606 (683)
+- ...+++ .||.|+.++....+++ |.+.+-.+|..+++.+.|...++..|+++.+.++-.........+-
T Consensus 95 ElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 95 ELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence 84 566664 6999999996555555 9999999999999999999999999999999984433213344555
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhH-------hcCCHHHHHHHHHHHH
Q 037121 607 CVSILLSLCSNAREEVTASLAKDPSLMNSLYSLT-------TDGTSQARKKARSLIK 656 (683)
Q Consensus 607 A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll-------~~g~~~~k~~A~~lL~ 656 (683)
|+.++.-+.... ..+ ...++.+..++ +..+...|-+++.+|.
T Consensus 173 al~Vlll~~~~~-~cw-------~e~~~~flali~~va~df~~~~~a~KfElc~lL~ 221 (698)
T KOG2611|consen 173 ALKVLLLLVSKL-DCW-------SETIERFLALIAAVARDFAVLHNALKFELCHLLS 221 (698)
T ss_pred HHHHHHHHHHhc-ccC-------cCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 666654444331 110 11133333333 3335556666777777
No 176
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.25 E-value=0.36 Score=53.61 Aligned_cols=233 Identities=15% Similarity=0.136 Sum_probs=136.5
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHhhccCCch---hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHH
Q 037121 421 IPPLLNLLSSPDQCVQENAVAALLKLSKHTSG---KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKL 497 (683)
Q Consensus 421 i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~---r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 497 (683)
|...+.+|++..+.++++|+.+.+.|+..=.+ -+.+...|.| |.+-|... .+|+......++..+.+....+..
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~-ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGED-YPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcc-cHHHHHHHHHHHHHHhhhhccccc
Confidence 34567788999999999999998888754333 2223344432 34455555 788888777777777665544432
Q ss_pred hhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhc-CcHHHHHHHHccCCChhHHHHHHHHHHHhhC--
Q 037121 498 IGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDA-GTVPLLADILASSNRTELITDSLAVLANLAE-- 574 (683)
Q Consensus 498 i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~-g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-- 574 (683)
---..|.+|.|..+|++....+..+....+..+|.......-..+. -+-=-|+.+| .+-+.+++..|...++.++.
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~L-ks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSL-KSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHhhHHHHHhhhhhhhhHHhhc
Confidence 2223789999999999999999999999998888765542211111 1223466677 44567777777766666552
Q ss_pred Chh-hHH----------------------HHHhcCC-hHHHHHhhccCC--ChHHHHHHHHHHHHHhcCChHHHHHHHhc
Q 037121 575 DIQ-GTS----------------------TILKTSA-LPVIIGLLQTLT--SRAGKEYCVSILLSLCSNAREEVTASLAK 628 (683)
Q Consensus 575 ~~~-~~~----------------------~i~~~g~-i~~Lv~lL~~~~--s~~~ke~A~~~L~~L~~~~~~~~~~~l~~ 628 (683)
.|. .-. .+.+..+ ...|=.+|..-. ..-++.-.+.+++.+-..-++....-+
T Consensus 762 GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYv-- 839 (975)
T COG5181 762 GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYV-- 839 (975)
T ss_pred CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHH--
Confidence 111 111 1112222 111222232211 222455455555544443322222222
Q ss_pred CCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHH
Q 037121 629 DPSLMNSLYSLTTDGTSQARKKARSLIKILHK 660 (683)
Q Consensus 629 ~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 660 (683)
..+.|.|-.-+.+.++.-|+-|..++++|.=
T Consensus 840 -y~itPlleDAltDrD~vhRqta~nvI~Hl~L 870 (975)
T COG5181 840 -YSITPLLEDALTDRDPVHRQTAMNVIRHLVL 870 (975)
T ss_pred -HHhhHHHHhhhcccchHHHHHHHHHHHHHhc
Confidence 2346666667777788888889988888753
No 177
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.012 Score=61.90 Aligned_cols=50 Identities=18% Similarity=0.385 Sum_probs=41.2
Q ss_pred CCCCccCCCCcccCCCce-----e---ccCcccccHHHHHHHHHhCC------CCCCCCCcccC
Q 037121 276 NPEDFRCPISLELMTDPV-----T---VSTGQTYDRSSIQKWLKAGN------MLCPKTGEKLT 325 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~dPv-----~---~~cght~~r~cI~~w~~~~~------~~CP~c~~~l~ 325 (683)
.-.+..|-||++...+++ . .+|.|+||..||.+|-.... +.||.|+....
T Consensus 158 ~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 158 KSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 366899999999998887 3 46999999999999996533 68999987543
No 178
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.04 E-value=0.16 Score=49.46 Aligned_cols=124 Identities=17% Similarity=0.219 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCchhhHHhh----------------cCcHHHHHHHHcCCC-----CHHHHHHHHHHHHHh
Q 037121 430 SPDQCVQENAVAALLKLSKHTSGKKVIVE----------------SGGLKVILKVLKSGL-----SLEARQIAAATLFYL 488 (683)
Q Consensus 430 s~d~~~q~~A~~aL~nLs~~~~~r~~i~~----------------~g~i~~Lv~lL~~~~-----~~e~~~~Aa~~L~~L 488 (683)
..+......++.+|.||+..+.....++. ..++..|+..+..|. ...-....+.+|.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 34444566778888999888877665541 236788888877631 233467889999999
Q ss_pred ccCchhHHHhhccCC-C--hHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhc---CcHHHHHHHH
Q 037121 489 TSVKGYRKLIGETPK-A--IPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDA---GTVPLLADIL 553 (683)
Q Consensus 489 s~~~~~~~~i~~~~g-~--i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~---g~v~~Lv~lL 553 (683)
+...+.|..+..... . +..|+....+.+..-+.-++.+|.|+|.+.+....+... +++|.|+--|
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence 999999998887443 3 567777777777777779999999999999998888774 4555544444
No 179
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.02 E-value=2 Score=50.73 Aligned_cols=224 Identities=15% Similarity=0.115 Sum_probs=135.1
Q ss_pred HHHhcCChHHHHhhcCC-----CCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcC---CCC----HHHHHHH
Q 037121 414 CIVESGAIPPLLNLLSS-----PDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKS---GLS----LEARQIA 481 (683)
Q Consensus 414 ~i~~~G~i~~Lv~lL~s-----~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~---~~~----~e~~~~A 481 (683)
.+.+.|++..|+.++.+ .+.......+..|...+....||..+++.|+++.|++.|.. ... .+.-+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 45668999999999875 34566667788888888999999999999999999998862 112 4555666
Q ss_pred HHHHHHhccCchh---HHHhh--c-------cCCChHHHHHhhhcC----CHHHHHHHHHHHHHcccCCchhhhH-hhcC
Q 037121 482 AATLFYLTSVKGY---RKLIG--E-------TPKAIPALVKLIEEG----TDCGKKNAVVAIFGLLLSQGNHQKV-LDAG 544 (683)
Q Consensus 482 a~~L~~Ls~~~~~---~~~i~--~-------~~g~i~~Lv~lL~~~----~~~~~~~A~~aL~nLs~~~~n~~~i-v~~g 544 (683)
..++..|...... ..... . ....+..|++.+.+. ++.+....+.+|-+|+......... ++.
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~- 270 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH- 270 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-
Confidence 6666555432211 10000 0 122366777766653 5788888899999999877654332 221
Q ss_pred cHHHHHHHHccC----C-ChhHHHHHHHHHHHhhCC---hhhHHHHHhcCChHHHHHhhccC-------CChHHHH----
Q 037121 545 TVPLLADILASS----N-RTELITDSLAVLANLAED---IQGTSTILKTSALPVIIGLLQTL-------TSRAGKE---- 605 (683)
Q Consensus 545 ~v~~Lv~lL~~~----~-~~~~~~~al~iL~nLa~~---~~~~~~i~~~g~i~~Lv~lL~~~-------~s~~~ke---- 605 (683)
+.+.+++=..+ . +.-..+..+.+..++..+ ..-|..|++.|.+...+++|... .+++.++
T Consensus 271 -F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ 349 (802)
T PF13764_consen 271 -FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR 349 (802)
T ss_pred -HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence 12222221001 1 112223333333344332 35678999999998888866542 1444444
Q ss_pred ----HHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhc
Q 037121 606 ----YCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTD 642 (683)
Q Consensus 606 ----~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~ 642 (683)
.++.+|.-||.+. ...+..+. .++++.+..|-+.
T Consensus 350 psLp~iL~lL~GLa~gh-~~tQ~~~~--~~~l~~lH~LEqv 387 (802)
T PF13764_consen 350 PSLPYILRLLRGLARGH-EPTQLLIA--EQLLPLLHRLEQV 387 (802)
T ss_pred CcHHHHHHHHHHHHhcC-HHHHHHHH--hhHHHHHHHhhcC
Confidence 4788888888875 33333333 4566666666443
No 180
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.00 E-value=0.0062 Score=48.99 Aligned_cols=47 Identities=21% Similarity=0.526 Sum_probs=23.6
Q ss_pred CccCCCCcccCC-C---ceec----cCcccccHHHHHHHHHh--CC--------CCCCCCCcccC
Q 037121 279 DFRCPISLELMT-D---PVTV----STGQTYDRSSIQKWLKA--GN--------MLCPKTGEKLT 325 (683)
Q Consensus 279 ~f~CpIc~~~m~-d---Pv~~----~cght~~r~cI~~w~~~--~~--------~~CP~c~~~l~ 325 (683)
+..|+||..... + |+.+ .|+++|-..|+.+||.. +. ..||.|++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 568999998764 2 4433 59999999999999986 11 25999998764
No 181
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.95 E-value=0.56 Score=53.20 Aligned_cols=229 Identities=15% Similarity=0.131 Sum_probs=133.7
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhhccCCchh---hHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhh
Q 037121 423 PLLNLLSSPDQCVQENAVAALLKLSKHTSGK---KVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIG 499 (683)
Q Consensus 423 ~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r---~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~ 499 (683)
..+..|.+..+.++.+|+.++..++..-.++ ..|...|++ |.+.|... .+|+......++..+.....-.+..-
T Consensus 803 tiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgee-ypEvLgsILgAikaI~nvigm~km~p 879 (1172)
T KOG0213|consen 803 TILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEE-YPEVLGSILGAIKAIVNVIGMTKMTP 879 (1172)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcc-cHHHHHHHHHHHHHHHHhccccccCC
Confidence 3456788899999999999999887544443 223344433 45566666 78888877777777765432222222
Q ss_pred ccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhc-CcHHHHHHHHccCCChhHHHHHHHHHHHhhC--Ch
Q 037121 500 ETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDA-GTVPLLADILASSNRTELITDSLAVLANLAE--DI 576 (683)
Q Consensus 500 ~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~-g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~--~~ 576 (683)
-..+.+|.|..+|++....+++++...+..++..........+. -+-=-|+++| ..-+..++..|...++.++. .|
T Consensus 880 Pi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelL-kahkK~iRRaa~nTfG~IakaIGP 958 (1172)
T KOG0213|consen 880 PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELL-KAHKKEIRRAAVNTFGYIAKAIGP 958 (1172)
T ss_pred ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHhcCH
Confidence 23689999999999999999999999999998765432222111 1223467777 34456777777776666652 11
Q ss_pred h-h----------------------HHHHHhcCC----hHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcC
Q 037121 577 Q-G----------------------TSTILKTSA----LPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKD 629 (683)
Q Consensus 577 ~-~----------------------~~~i~~~g~----i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~ 629 (683)
. . ...+.+..+ +|.|+.=-+.. .--++.-.+.+|+.|-..-++- .+.-+
T Consensus 959 qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~Feyigem-skdYi-- 1034 (1172)
T KOG0213|consen 959 QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIGEM-SKDYI-- 1034 (1172)
T ss_pred HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHHHH-hhhHH--
Confidence 1 1 011122222 22222211211 2224444455554444332221 11111
Q ss_pred CCcHHHHHHhHhcCCHHHHHHHHHHHHHHH
Q 037121 630 PSLMNSLYSLTTDGTSQARKKARSLIKILH 659 (683)
Q Consensus 630 ~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~ 659 (683)
..+.|.|-.-+-+-+..-|+-|..++++|.
T Consensus 1035 yav~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1035 YAVTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred HHhhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 224666666667777778888888888775
No 182
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.93 E-value=0.31 Score=55.71 Aligned_cols=74 Identities=23% Similarity=0.244 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCc
Q 037121 375 MKLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTS 451 (683)
Q Consensus 375 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~ 451 (683)
.+....+|...++..++.++..|+-....+-. .+.......|+++.|-.++.+.++.+..+|+.+|..+.....
T Consensus 119 ~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 119 TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 35567888899999999999988866666544 445667788999999999999999999999999999976554
No 183
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.86 E-value=0.25 Score=49.84 Aligned_cols=149 Identities=12% Similarity=0.103 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCC-----HHHHHHHHHHHHhhccCCch--hhHHhhcCcHHH
Q 037121 392 EEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPD-----QCVQENAVAALLKLSKHTSG--KKVIVESGGLKV 464 (683)
Q Consensus 392 ~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d-----~~~q~~A~~aL~nLs~~~~~--r~~i~~~g~i~~ 464 (683)
.-.+.|+..++.+|. +++.|..|.++...-.|..+|...+ ..++..++++++.|.+.++. -..+.+.+.+|.
T Consensus 65 nRVcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiipl 143 (262)
T PF04078_consen 65 NRVCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPL 143 (262)
T ss_dssp HHHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHH
Confidence 345678888888888 6899999999998777888886533 45788889999999875443 444558899999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhcc-------CCChHHHHH-hhhcCCHHHHHHHHHHHHHcccCCch
Q 037121 465 ILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGET-------PKAIPALVK-LIEEGTDCGKKNAVVAIFGLLLSQGN 536 (683)
Q Consensus 465 Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-------~g~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n 536 (683)
.++.+..| +.-.+..|..++..+-.++..-.-+... ..++...|. +..+.+++..+....+-..|+.++..
T Consensus 144 cLr~me~G-selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpra 222 (262)
T PF04078_consen 144 CLRIMEFG-SELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRA 222 (262)
T ss_dssp HHHHHHHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTH
T ss_pred HHHHHHhc-cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHH
Confidence 99999999 8888999999998888777543333221 223333333 34557889999999999999999887
Q ss_pred hhhHhh
Q 037121 537 HQKVLD 542 (683)
Q Consensus 537 ~~~iv~ 542 (683)
+..+.+
T Consensus 223 r~aL~~ 228 (262)
T PF04078_consen 223 REALRQ 228 (262)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766553
No 184
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=8.6 Score=44.57 Aligned_cols=73 Identities=15% Similarity=0.021 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccC
Q 037121 372 AEAMKLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKH 449 (683)
Q Consensus 372 ~~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~ 449 (683)
.+..+.+.+.+.+.|+..++.++.+|+-+...+-...|+.-.. +++..-.+|.+.+..+...++..+..++..
T Consensus 137 ~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 137 PEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKI 209 (866)
T ss_pred HHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhc
Confidence 4455667777778888889999999887766666555543333 345666677777777777677777766654
No 185
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=94.63 E-value=0.14 Score=44.32 Aligned_cols=64 Identities=22% Similarity=0.229 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC--CCHHHHHHHHHHHHhhccCC-chhhHHh
Q 037121 394 KNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS--PDQCVQENAVAALLKLSKHT-SGKKVIV 457 (683)
Q Consensus 394 ~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~q~~A~~aL~nLs~~~-~~r~~i~ 457 (683)
+...++.|.+++..++.++..+.+.|+||.++..-.- .++-+++.|+.++.||+... +|++.|.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4566788899999999999999999999999987643 68999999999999999764 5676665
No 186
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=94.49 E-value=0.051 Score=40.32 Aligned_cols=41 Identities=20% Similarity=0.478 Sum_probs=31.9
Q ss_pred cCCCCcc--cCCCceeccCc-----ccccHHHHHHHHHh-CCCCCCCCC
Q 037121 281 RCPISLE--LMTDPVTVSTG-----QTYDRSSIQKWLKA-GNMLCPKTG 321 (683)
Q Consensus 281 ~CpIc~~--~m~dPv~~~cg-----ht~~r~cI~~w~~~-~~~~CP~c~ 321 (683)
.|-||++ .-.+|.+.||. +.+-+.|+.+|+.. +..+||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3778886 44677777875 67889999999987 456899985
No 187
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=94.32 E-value=0.048 Score=40.61 Aligned_cols=44 Identities=23% Similarity=0.496 Sum_probs=23.9
Q ss_pred ccCCCCcccCCCcee-ccCccc--ccHHH-HHHHHHhCCCCCCCCCcc
Q 037121 280 FRCPISLELMTDPVT-VSTGQT--YDRSS-IQKWLKAGNMLCPKTGEK 323 (683)
Q Consensus 280 f~CpIc~~~m~dPv~-~~cght--~~r~c-I~~w~~~~~~~CP~c~~~ 323 (683)
+.|||+...|.-|+- ..|.|. |+-.. |+.....+.+.||.|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 689999999999997 479986 66643 333333466899999863
No 188
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.032 Score=58.75 Aligned_cols=46 Identities=22% Similarity=0.498 Sum_probs=39.3
Q ss_pred CCccCCCCcccC---CCceeccCcccccHHHHHHHHHhCC--CCCCCCCcc
Q 037121 278 EDFRCPISLELM---TDPVTVSTGQTYDRSSIQKWLKAGN--MLCPKTGEK 323 (683)
Q Consensus 278 ~~f~CpIc~~~m---~dPv~~~cght~~r~cI~~w~~~~~--~~CP~c~~~ 323 (683)
.-|.|||..+-- .-|+.++|||..++..|.+....|. +.||-|...
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 458999988776 4588899999999999999999887 899999543
No 189
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.27 E-value=0.029 Score=54.81 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=34.4
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHh
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKA 312 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~ 312 (683)
.+.+.-+|.+|++..+|||+.+-||.|||.||-+++..
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 45666688999999999999999999999999999875
No 190
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.24 E-value=2.3 Score=47.49 Aligned_cols=151 Identities=13% Similarity=-0.025 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCc--hhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchh
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNI--FNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGK 453 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~--~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r 453 (683)
...+...+..|++.+++++..|+.....+++--. .....+...|. .|.+-|...++++.-..+.++..+...-.-+
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 3467788899999999999999988888775211 11233444553 4667777788888776666666554322221
Q ss_pred -hHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchh---HHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 037121 454 -KVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGY---RKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFG 529 (683)
Q Consensus 454 -~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~---~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n 529 (683)
-+---.|.+|.|.-+|++. ...+..+..+.+..++..... .+...+ .--.|+++|++-+.+++++|..++..
T Consensus 681 ~mqpPi~~ilP~ltPILrnk-h~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~ 756 (975)
T COG5181 681 SMQPPISGILPSLTPILRNK-HQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGC 756 (975)
T ss_pred ccCCchhhccccccHhhhhh-hHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhh
Confidence 1112468899999999998 678888888888888875432 222222 23467888888888888888877766
Q ss_pred ccc
Q 037121 530 LLL 532 (683)
Q Consensus 530 Ls~ 532 (683)
++.
T Consensus 757 Is~ 759 (975)
T COG5181 757 ISR 759 (975)
T ss_pred HHh
Confidence 654
No 191
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.10 E-value=0.019 Score=65.76 Aligned_cols=50 Identities=18% Similarity=0.476 Sum_probs=38.3
Q ss_pred CCCCccCCCCcccCC--C---cee--ccCcccccHHHHHHHHHh-CCCCCCCCCcccC
Q 037121 276 NPEDFRCPISLELMT--D---PVT--VSTGQTYDRSSIQKWLKA-GNMLCPKTGEKLT 325 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~--d---Pv~--~~cght~~r~cI~~w~~~-~~~~CP~c~~~l~ 325 (683)
....-.|+||..++. | |-- -.|.|-|--+|+.+||.+ |..+||.||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 345567999998874 2 322 258899999999999997 6789999996553
No 192
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=93.96 E-value=4.5 Score=45.02 Aligned_cols=272 Identities=13% Similarity=0.079 Sum_probs=159.4
Q ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhcCchhhHHHHhcC--ChHHHHhhcCC-CCHHHHHHHHHHHHh-hccC---
Q 037121 378 MSRFLARRLFFGT-NEEKNKAAYEIRLLAKSNIFNRSCIVESG--AIPPLLNLLSS-PDQCVQENAVAALLK-LSKH--- 449 (683)
Q Consensus 378 ~i~~Lv~~L~s~~-~~~~~~a~~~L~~La~~~~~~r~~i~~~G--~i~~Lv~lL~s-~d~~~q~~A~~aL~n-Ls~~--- 449 (683)
....++.....+. ...+++++..+.+.+....- ...+...+ .+.....-++. ++..++..|+.+|.+ |-..
T Consensus 134 lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~n 212 (858)
T COG5215 134 LMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGN 212 (858)
T ss_pred HHHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555554443 45788899999988874322 22222233 22233334444 678899999999988 3222
Q ss_pred ---CchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC-chhHHHhhccCCChHHHHHhhhcCCHHHHHHHHH
Q 037121 450 ---TSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSV-KGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVV 525 (683)
Q Consensus 450 ---~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~ 525 (683)
+.+|..++ ...++.-+.. +.+++..|...|..+..- -..-..+.+ ......+...+++.++++...|..
T Consensus 213 f~~E~erNy~m-----qvvceatq~~-d~e~q~aafgCl~kim~LyY~fm~~ymE-~aL~alt~~~mks~nd~va~qavE 285 (858)
T COG5215 213 FCYEEERNYFM-----QVVCEATQGN-DEELQHAAFGCLNKIMMLYYKFMQSYME-NALAALTGRFMKSQNDEVAIQAVE 285 (858)
T ss_pred hcchhhhchhh-----eeeehhccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcchHHHHHHHH
Confidence 22233332 2233333444 788888888888777542 222333443 223334455667777777666665
Q ss_pred HHHHcccCCc-----------------hhhhHhhcCcHHHHHHHHcc-CC-----ChhHHHHHHHHHHHhhCChhhHHHH
Q 037121 526 AIFGLLLSQG-----------------NHQKVLDAGTVPLLADILAS-SN-----RTELITDSLAVLANLAEDIQGTSTI 582 (683)
Q Consensus 526 aL~nLs~~~~-----------------n~~~iv~~g~v~~Lv~lL~~-~~-----~~~~~~~al~iL~nLa~~~~~~~~i 582 (683)
--..+|...- +..+..-++++|.|+++|.. ++ +=.....|-.+|...+..- ...|
T Consensus 286 fWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~--gd~i 363 (858)
T COG5215 286 FWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK--GDKI 363 (858)
T ss_pred HHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh--hhHh
Confidence 5445543211 12233334689999999953 22 1124445555555544311 1133
Q ss_pred HhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhh
Q 037121 583 LKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFI 662 (683)
Q Consensus 583 ~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 662 (683)
++ +++..+-+-+++. +-..+|.|+-++..+..+..+.+...++ +.++|.+..+..+..-.+|..++|.+..+.++-
T Consensus 364 ~~-pVl~FvEqni~~~-~w~nreaavmAfGSvm~gp~~~~lT~~V--~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v 439 (858)
T COG5215 364 MR-PVLGFVEQNIRSE-SWANREAAVMAFGSVMHGPCEDCLTKIV--PQALPGIENEMSDSCLWVKSTTAWCFGAIADHV 439 (858)
T ss_pred HH-HHHHHHHHhccCc-hhhhHHHHHHHhhhhhcCccHHHHHhhH--HhhhHHHHHhcccceeehhhHHHHHHHHHHHHH
Confidence 33 1222233345555 6778999999999988876666666665 456888888888777788999999988888764
Q ss_pred h
Q 037121 663 E 663 (683)
Q Consensus 663 ~ 663 (683)
.
T Consensus 440 a 440 (858)
T COG5215 440 A 440 (858)
T ss_pred H
Confidence 4
No 193
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=93.79 E-value=0.053 Score=53.80 Aligned_cols=44 Identities=36% Similarity=0.556 Sum_probs=36.7
Q ss_pred CCccCCCCcccCCCceec-cCcccccHHHHHHHHHhC-CCCCCCCC
Q 037121 278 EDFRCPISLELMTDPVTV-STGQTYDRSSIQKWLKAG-NMLCPKTG 321 (683)
Q Consensus 278 ~~f~CpIc~~~m~dPv~~-~cght~~r~cI~~w~~~~-~~~CP~c~ 321 (683)
-+++||++......|++- .|||.|+|..|....... ...||+-+
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~g 220 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLG 220 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeeccccc
Confidence 478999999999999984 799999999999988642 34699843
No 194
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=93.77 E-value=0.067 Score=42.91 Aligned_cols=46 Identities=24% Similarity=0.411 Sum_probs=35.1
Q ss_pred CccCCCCcccCC----Cceec-cCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 279 DFRCPISLELMT----DPVTV-STGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 279 ~f~CpIc~~~m~----dPv~~-~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
.-+||-|+.-|. =|+.- .|.|.|--.||++|+.. ...||.+++...
T Consensus 31 m~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 31 MGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred cCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 446777777552 13333 69999999999999998 789999998753
No 195
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=4.4 Score=46.18 Aligned_cols=263 Identities=12% Similarity=0.130 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCC--HHHHHHHHHHHHhhccCC
Q 037121 373 EAMKLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPD--QCVQENAVAALLKLSKHT 450 (683)
Q Consensus 373 ~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d--~~~q~~A~~aL~nLs~~~ 450 (683)
+-.+..+..+-..|.+.++--+.-|+..+.++-. .+++..+. .-|| ++|-+++ .-++..|+-+|+.|-...
T Consensus 107 dl~klvin~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~s 179 (938)
T KOG1077|consen 107 DLMKLVINSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKS 179 (938)
T ss_pred HHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcC
Confidence 3455667777788888888888888888888754 34444443 2244 5565533 345666666666665442
Q ss_pred chhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc--hhHHHhhccCCChHHHHHhhhc-------------C
Q 037121 451 SGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVK--GYRKLIGETPKAIPALVKLIEE-------------G 515 (683)
Q Consensus 451 ~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~-------------~ 515 (683)
+ +.+--.+.+..++.+|... ...+...+...+..|+... +++..... ++..|..+... +
T Consensus 180 p--Dl~~~~~W~~riv~LL~D~-~~gv~ta~~sLi~~lvk~~p~~yk~~~~~---avs~L~riv~~~~t~~qdYTyy~vP 253 (938)
T KOG1077|consen 180 P--DLVNPGEWAQRIVHLLDDQ-HMGVVTAATSLIEALVKKNPESYKTCLPL---AVSRLSRIVVVVGTSLQDYTYYFVP 253 (938)
T ss_pred c--cccChhhHHHHHHHHhCcc-ccceeeehHHHHHHHHHcCCHHHhhhHHH---HHHHHHHHHhhcccchhhceeecCC
Confidence 2 2222345788999999987 5666777777777776532 23322221 22222222211 2
Q ss_pred CHHHHHHHHHHHHHcccCCch--hhhHhhcCcHHHHHHHHccCC---C-------hhHHHHHHHHHHHhhCChhhHHHHH
Q 037121 516 TDCGKKNAVVAIFGLLLSQGN--HQKVLDAGTVPLLADILASSN---R-------TELITDSLAVLANLAEDIQGTSTIL 583 (683)
Q Consensus 516 ~~~~~~~A~~aL~nLs~~~~n--~~~iv~~g~v~~Lv~lL~~~~---~-------~~~~~~al~iL~nLa~~~~~~~~i~ 583 (683)
.+..+-.++.+|.++=...++ +.++. .+++.++...+..+ + ..+.-+|+.....+=..++ .+.
T Consensus 254 ~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~---ll~ 328 (938)
T KOG1077|consen 254 APWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPE---LLS 328 (938)
T ss_pred ChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHH---HHH
Confidence 467788888888888443333 44433 24445554442111 1 1122233333333322222 222
Q ss_pred hcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHh-cCCHHHHHHHHHHHHHHHHh
Q 037121 584 KTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTT-DGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 584 ~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-~g~~~~k~~A~~lL~~l~~~ 661 (683)
.++..|-+++.+. .+-.|--|+.-++.||+.. .....+.. . ...++..+. ..+..+|++|..||..|.+.
T Consensus 329 --~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~--~s~davK~-h--~d~Ii~sLkterDvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 329 --RAVNQLGQFLSHR-ETNIRYLALESMCKLASSE--FSIDAVKK-H--QDTIINSLKTERDVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred --HHHHHHHHHhhcc-cccchhhhHHHHHHHHhcc--chHHHHHH-H--HHHHHHHhccccchHHHHHHHHHHHHHhch
Confidence 3566777788876 6778888888888888873 33444443 3 556666666 55778899999999888764
No 196
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.72 E-value=2.4 Score=48.82 Aligned_cols=259 Identities=19% Similarity=0.176 Sum_probs=136.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch-----
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG----- 452 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~----- 452 (683)
..+++=..|.+....+..+|++.+..+...++. .+. .++..|--+|++....+|-.|+.+|..++.--..
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c 320 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR---ELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC 320 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCHh---hcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 456676777777888999999998888765432 222 2677888889999999999999999998743322
Q ss_pred -h--hHHh-hc---CcHHHHHHHHcCCCCHHHHHHHHHHHHHhcc--CchhHHHhhccCCChHHHHHhhhcCCHHHHHHH
Q 037121 453 -K--KVIV-ES---GGLKVILKVLKSGLSLEARQIAAATLFYLTS--VKGYRKLIGETPKAIPALVKLIEEGTDCGKKNA 523 (683)
Q Consensus 453 -r--~~i~-~~---g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~--~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A 523 (683)
+ +.++ .. =+..++..+|+.| +.+....-+..+.+... .++++..+.. ++..|... -+.-....
T Consensus 321 N~elE~lItd~NrsIat~AITtLLKTG-~e~sv~rLm~qI~~fv~disDeFKivvvd---ai~sLc~~----fp~k~~~~ 392 (865)
T KOG1078|consen 321 NLDLESLITDSNRSIATLAITTLLKTG-TESSVDRLMKQISSFVSDISDEFKIVVVD---AIRSLCLK----FPRKHTVM 392 (865)
T ss_pred chhHHhhhcccccchhHHHHHHHHHhc-chhHHHHHHHHHHHHHHhccccceEEeHH---HHHHHHhh----ccHHHHHH
Confidence 1 1222 11 1344566677776 44433333333333222 2333333222 33333322 22333333
Q ss_pred HHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHH-----------------HHHHHHhhCChhhHHHHHhcC
Q 037121 524 VVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDS-----------------LAVLANLAEDIQGTSTILKTS 586 (683)
Q Consensus 524 ~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~a-----------------l~iL~nLa~~~~~~~~i~~~g 586 (683)
+.-|.++...+++.... ..+|+.++..+. ..++..+.+ ..+|..|.. +|-....-..
T Consensus 393 m~FL~~~Lr~eGg~e~K--~aivd~Ii~iie--~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~--EgP~a~~Psk 466 (865)
T KOG1078|consen 393 MNFLSNMLREEGGFEFK--RAIVDAIIDIIE--ENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGK--EGPKAPNPSK 466 (865)
T ss_pred HHHHHHHHHhccCchHH--HHHHHHHHHHHH--hCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhc--cCCCCCCcch
Confidence 44444444443221110 012333444431 122333333 333333221 0000000111
Q ss_pred ChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhhh
Q 037121 587 ALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFIE 663 (683)
Q Consensus 587 ~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~ 663 (683)
-+..+...+.-. +..++-.|+.+|..+..+. + .+. ..+...|...+.+.++.+|.+|...|+.+.....
T Consensus 467 yir~iyNRviLE-n~ivRaaAv~alaKfg~~~-~----~l~--~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~~ 535 (865)
T KOG1078|consen 467 YIRFIYNRVILE-NAIVRAAAVSALAKFGAQD-V----VLL--PSILVLLKRCLNDSDDEVRDRATFYLKNLEEKDD 535 (865)
T ss_pred hhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCC-C----Ccc--ccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhhh
Confidence 133343322212 5678888898988888443 1 122 3445566667788899999999999999985443
No 197
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.62 E-value=0.049 Score=39.85 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=22.3
Q ss_pred CCCCcccC--CCceec--cCcccccHHHHHHHHHhCCCCCCCCCccc
Q 037121 282 CPISLELM--TDPVTV--STGQTYDRSSIQKWLKAGNMLCPKTGEKL 324 (683)
Q Consensus 282 CpIc~~~m--~dPv~~--~cght~~r~cI~~w~~~~~~~CP~c~~~l 324 (683)
||+|.+.| +|--.. +||+-+|+.|..+-...++..||.|+++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78998888 221223 69999999998887776688999999764
No 198
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.61 E-value=1.6 Score=48.12 Aligned_cols=157 Identities=16% Similarity=0.139 Sum_probs=113.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCH----HHHHHHHHHHHHcccCCchh
Q 037121 462 LKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTD----CGKKNAVVAIFGLLLSQGNH 537 (683)
Q Consensus 462 i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~----~~~~~A~~aL~nLs~~~~n~ 537 (683)
...+.+++.+| ++..+..|...|.+++.+......... ..++..|..++.+++. ......+.++..|..+.-.-
T Consensus 85 a~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~fa~efi~-~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 85 AKRIMEILTEG-NNISKMEALKELDSLSLDPTFAEEFIR-CSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHh-cchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 34566778888 778888899999999999998888888 7889999999998765 45556666666665554433
Q ss_pred hhHhhcCcHHHHHHHHc-cCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHh
Q 037121 538 QKVLDAGTVPLLADILA-SSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLC 615 (683)
Q Consensus 538 ~~iv~~g~v~~Lv~lL~-~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~ 615 (683)
...+...+|.....+.. ...+..+...|+.+|.++.. ++.-++.+.+.--+..|+..++.+ +...+..|.+.+-.|.
T Consensus 163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~-n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS-NQRIQTCAIALLNALF 241 (713)
T ss_pred eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc-chHHHHHHHHHHHHHH
Confidence 44444445555555541 12355677889999999975 444667777766799999999887 7777777888887777
Q ss_pred cCChHH
Q 037121 616 SNAREE 621 (683)
Q Consensus 616 ~~~~~~ 621 (683)
...++.
T Consensus 242 ~~a~~~ 247 (713)
T KOG2999|consen 242 RKAPDD 247 (713)
T ss_pred hhCChH
Confidence 665443
No 199
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.51 E-value=0.66 Score=44.87 Aligned_cols=79 Identities=20% Similarity=0.340 Sum_probs=65.1
Q ss_pred hhhHhhcCcHHHHHHHHcc--------CCChhHHHHHHHHHHHhhCChhhHHHHHhcCC-hHHHHHhhccCCChHHHHHH
Q 037121 537 HQKVLDAGTVPLLADILAS--------SNRTELITDSLAVLANLAEDIQGTSTILKTSA-LPVIIGLLQTLTSRAGKEYC 607 (683)
Q Consensus 537 ~~~iv~~g~v~~Lv~lL~~--------~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~-i~~Lv~lL~~~~s~~~ke~A 607 (683)
...+++.|++..|+++|.. ..+......++.+|..|..+..|...+.+... +..|+..|.+. +..++..+
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~-~~~~r~~~ 178 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSP-NIKTRKLA 178 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TT-SHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCC-CHHHHHHH
Confidence 5688889999999999842 13457888899999999999999999998765 89999988877 89999999
Q ss_pred HHHHHHHhc
Q 037121 608 VSILLSLCS 616 (683)
Q Consensus 608 ~~~L~~L~~ 616 (683)
+.+|..+|.
T Consensus 179 leiL~~lc~ 187 (187)
T PF06371_consen 179 LEILAALCL 187 (187)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 999999883
No 200
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.44 E-value=3.7 Score=39.53 Aligned_cols=92 Identities=24% Similarity=0.209 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCc-HHHHHHH
Q 037121 390 TNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGG-LKVILKV 468 (683)
Q Consensus 390 ~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~-i~~Lv~l 468 (683)
++.++..++-.+..|+...+. ++ ...+|.+...|.++++.++.+|+.+|..|...+--|- .|- +..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHH
Confidence 467888899999988876543 22 2457899999999999999999999999975533221 233 4777888
Q ss_pred HcCCCCHHHHHHHHHHHHHhccC
Q 037121 469 LKSGLSLEARQIAAATLFYLTSV 491 (683)
Q Consensus 469 L~~~~~~e~~~~Aa~~L~~Ls~~ 491 (683)
+.+. +++++..|..++..+...
T Consensus 72 l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCC-CHHHHHHHHHHHHHHHHh
Confidence 8777 899999999999999765
No 201
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=93.41 E-value=0.017 Score=64.82 Aligned_cols=49 Identities=16% Similarity=0.407 Sum_probs=41.5
Q ss_pred CCCccCCCCcccCCCceec---cCcccccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 277 PEDFRCPISLELMTDPVTV---STGQTYDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv~~---~cght~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
-.+-.||+|..-+.|-.+. +|+|.||..||..|.+- ..+||.|+..+..
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence 4567899999998887653 79999999999999986 7899999987654
No 202
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=0.056 Score=56.33 Aligned_cols=49 Identities=16% Similarity=0.381 Sum_probs=34.6
Q ss_pred CccCCCCcccCCCce----eccCcccccHHHHHHHHHhCC--CCCCCCCcccCCC
Q 037121 279 DFRCPISLELMTDPV----TVSTGQTYDRSSIQKWLKAGN--MLCPKTGEKLTNT 327 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv----~~~cght~~r~cI~~w~~~~~--~~CP~c~~~l~~~ 327 (683)
--.|.||-+..-.-- +-.|||+|.-.|+.+||.... .+||.|+-.+...
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r 58 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQER 58 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccce
Confidence 347999955442111 236999999999999999743 4899998555443
No 203
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.36 E-value=1.1 Score=47.59 Aligned_cols=196 Identities=18% Similarity=0.137 Sum_probs=139.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhH-----HHHhc--CChHHHHhhcCCCCHHHHHHHHHHHHhhccC
Q 037121 377 LMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRS-----CIVES--GAIPPLLNLLSSPDQCVQENAVAALLKLSKH 449 (683)
Q Consensus 377 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~-----~i~~~--G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~ 449 (683)
.++..|+..|...+.|.+..++....++.+.....+. .+... ..+..|+.-- +++++-..+-..|.....+
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k~ 153 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIKH 153 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHhh
Confidence 3567788888888999999999988888887665543 23322 1222222222 5677777888889999998
Q ss_pred CchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC-chhHHHhhc--cCCChHHHHHhhhcCCHHHHHHHHHH
Q 037121 450 TSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSV-KGYRKLIGE--TPKAIPALVKLIEEGTDCGKKNAVVA 526 (683)
Q Consensus 450 ~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~~~i~~--~~g~i~~Lv~lL~~~~~~~~~~A~~a 526 (683)
+.-...|+....+..+...+..+ +-++-..|..++..+-.. ..-...... -...+...-.+|.+++...++.++..
T Consensus 154 e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 154 ESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp HHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 88777888888898999999888 999999999999886543 322222221 12356677789999999999999999
Q ss_pred HHHcccCCchhhh----HhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCCh
Q 037121 527 IFGLLLSQGNHQK----VLDAGTVPLLADILASSNRTELITDSLAVLANLAEDI 576 (683)
Q Consensus 527 L~nLs~~~~n~~~----iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~ 576 (683)
|..|..+..|... +-+..-+..++.+| .+.+..++.+|..++.....+|
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL-~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLL-RDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHT-T-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHh-cCcchhhhHHHHHHHHHHHhCC
Confidence 9999999988543 33346778888888 7889999999999999876554
No 204
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.23 E-value=2 Score=50.10 Aligned_cols=228 Identities=12% Similarity=0.125 Sum_probs=148.8
Q ss_pred CCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHH
Q 037121 429 SSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPAL 508 (683)
Q Consensus 429 ~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~L 508 (683)
.+..+.....|.+++...+....--..+. .-.+...+..+.-...+.++..|..++...+...-.. -..++.+..|
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~---~~~p~ild~L 535 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLL---SLQPMILDGL 535 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccCceecc---ccchHHHHHH
Confidence 44566666678888776653321111111 1124444555554445667777888877777322111 1126677788
Q ss_pred HHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHc-cCCChhHHHHHHHHHHHhhCChhhHHHHHhcCC
Q 037121 509 VKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILA-SSNRTELITDSLAVLANLAEDIQGTSTILKTSA 587 (683)
Q Consensus 509 v~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~-~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~ 587 (683)
..+....+.++.-..+-+|+..+..+.......+..+.|.++.++. .++++.+...+-.++..|+....+..-+. .-.
T Consensus 536 ~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e~~ 614 (1005)
T KOG2274|consen 536 LQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ-ERL 614 (1005)
T ss_pred HHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH-HHH
Confidence 8887777788888889999999998888888888889998888853 45678888888888888876433333332 356
Q ss_pred hHHHHHhhccCC---ChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHh-HhcCCHHHHHHHHHHHHHH-HHhh
Q 037121 588 LPVIIGLLQTLT---SRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSL-TTDGTSQARKKARSLIKIL-HKFI 662 (683)
Q Consensus 588 i~~Lv~lL~~~~---s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~L-l~~g~~~~k~~A~~lL~~l-~~~~ 662 (683)
||.++.+|.... ......-|+.+|-.+.++.+....+.+.. -++|++... +++++...-+.|.++|+.+ +...
T Consensus 615 iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~--~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 615 IPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC--YAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH--HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 899999887651 24566667777777777766555555553 357777776 4556666677888888844 4433
Q ss_pred h
Q 037121 663 E 663 (683)
Q Consensus 663 ~ 663 (683)
+
T Consensus 693 e 693 (1005)
T KOG2274|consen 693 E 693 (1005)
T ss_pred H
Confidence 3
No 205
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.13 E-value=0.93 Score=52.16 Aligned_cols=194 Identities=13% Similarity=0.108 Sum_probs=130.7
Q ss_pred ccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHH-hccCchhHHHhhccCCChHHHHHhhhcCCH-HHHHHHH
Q 037121 447 SKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFY-LTSVKGYRKLIGETPKAIPALVKLIEEGTD-CGKKNAV 524 (683)
Q Consensus 447 s~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~-Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~A~ 524 (683)
+.....+...++.|+...++.+.... +.+++-.+..+|.. +.... . +....++++.+.+.+... -..-.++
T Consensus 491 A~~K~~~~~~Ik~~~~~aLlrl~~~q-~e~akl~~~~aL~~~i~f~~-~-----~~~~v~~~~~s~~~~d~~~~en~E~L 563 (748)
T KOG4151|consen 491 AKEKYERAKKIKPGGYEALLRLGQQQ-FEEAKLKWYHALAGKIDFPG-E-----RSYEVVKPLDSALHNDEKGLENFEAL 563 (748)
T ss_pred hhhHHhcCccccccHHHHHHHHHHHh-chHHHHHHHHHHhhhcCCCC-C-----chhhhhhhhcchhhhhHHHHHHHHHH
Confidence 34445578888999999999999888 77888888888872 21111 0 114566777777655332 2334799
Q ss_pred HHHHHcccCCc-hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhH-HHHHh-cCChHHHHHhhccCCCh
Q 037121 525 VAIFGLLLSQG-NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGT-STILK-TSALPVIIGLLQTLTSR 601 (683)
Q Consensus 525 ~aL~nLs~~~~-n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~-~~i~~-~g~i~~Lv~lL~~~~s~ 601 (683)
-+|.||++.++ .+.++++.-.++.+-.++ ...++..+..++..+.||..++..- ..+++ ..+++.....+... ..
T Consensus 564 ~altnLas~s~s~r~~i~ke~~~~~ie~~~-~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E 641 (748)
T KOG4151|consen 564 EALTNLASISESDRQKILKEKALGKIEELM-TEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DE 641 (748)
T ss_pred HHhhcccCcchhhHHHHHHHhcchhhHHHh-hcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hh
Confidence 99999998766 467788887777766666 6778999999999999998776644 34455 33577777777664 56
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHH
Q 037121 602 AGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKK 650 (683)
Q Consensus 602 ~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~ 650 (683)
+..-.+++++..++......+.. ..+-......++.++.++++.++..
T Consensus 642 ~~~lA~a~a~a~I~sv~~n~c~~-~~~~~~~~e~~~~~i~~~~~~~qhr 689 (748)
T KOG4151|consen 642 KFELAGAGALAAITSVVENHCSR-ILELLEWLEILVRAIQDEDDEIQHR 689 (748)
T ss_pred HHhhhccccccchhhcchhhhhh-HHHhhcchHHHHHhhcCchhhhhhh
Confidence 66666666666455544222221 2222345777788888888777755
No 206
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.09 E-value=0.048 Score=40.83 Aligned_cols=47 Identities=13% Similarity=0.090 Sum_probs=36.6
Q ss_pred CCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCC
Q 037121 278 EDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNT 327 (683)
Q Consensus 278 ~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~ 327 (683)
.+..|-.|...-...++++|||..|+.|..-+ .-..||.|+.++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFD 52 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCC
Confidence 35567778888788889999999999885533 356799999988654
No 207
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.09 E-value=0.39 Score=54.92 Aligned_cols=150 Identities=17% Similarity=0.133 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhH
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKV 455 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~ 455 (683)
.+.+..++....+.+|..+.-|++.+..+-- .. +. .-...+|...++++++-++..|+....++- ..+.+.
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm~~l~v---~~---i~-ey~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~ 155 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTMGCLRV---DK---IT-EYLCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDL 155 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhceeeEee---hH---HH-HHHHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhh
Confidence 3466777788888889888877754444322 11 11 123578999999999999998887777764 334566
Q ss_pred HhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCc
Q 037121 456 IVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQG 535 (683)
Q Consensus 456 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 535 (683)
....|.++.|-+++.+. ++.+..+|.++|..+...+.+.....-....+..++..+..-+..++...+.+|.+-...++
T Consensus 156 ~~~~gl~~~L~~ll~D~-~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~ 234 (734)
T KOG1061|consen 156 VEDSGLVDALKDLLSDS-NPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS 234 (734)
T ss_pred ccccchhHHHHHHhcCC-CchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc
Confidence 66889999999999976 88999999999999987554311111112334444555555555666666666555544433
No 208
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=93.00 E-value=0.043 Score=57.18 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=39.1
Q ss_pred cCCCCcccCCCceeccCcccccHHHHHHHHHh-CCCCCCCCCcccCC
Q 037121 281 RCPISLELMTDPVTVSTGQTYDRSSIQKWLKA-GNMLCPKTGEKLTN 326 (683)
Q Consensus 281 ~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~-~~~~CP~c~~~l~~ 326 (683)
.|-||-+-=+|=-+=+|||-.|-.|+..|..+ +..+||.|+-.+.-
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 58899998888667799999999999999976 46799999876643
No 209
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.68 E-value=0.079 Score=54.07 Aligned_cols=49 Identities=20% Similarity=0.267 Sum_probs=36.3
Q ss_pred ccCCCCcccCC--Ccee--ccCcccccHHHHHHHHHhCCCCCCCCCcccCCCC
Q 037121 280 FRCPISLELMT--DPVT--VSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTE 328 (683)
Q Consensus 280 f~CpIc~~~m~--dPv~--~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~ 328 (683)
-.||+|.+.|- |--. .+||...|+.|.......=+..||.|+.......
T Consensus 15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred ccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 34999999994 3222 3799999999977655554678999998776554
No 210
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=92.59 E-value=4.3 Score=46.49 Aligned_cols=120 Identities=19% Similarity=0.160 Sum_probs=75.9
Q ss_pred HHHHHhcCCCHHHH---HHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch----h
Q 037121 381 FLARRLFFGTNEEK---NKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG----K 453 (683)
Q Consensus 381 ~Lv~~L~s~~~~~~---~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~----r 453 (683)
.|.+.|....+++- ..|++.|.+.-....- ..- -.|.+|.|...|++....+|++.+..++.++..... |
T Consensus 845 vLyEylgeeypEvLgsILgAikaI~nvigm~km-~pP--i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aR 921 (1172)
T KOG0213|consen 845 VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM-TPP--IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAR 921 (1172)
T ss_pred HHHHhcCcccHHHHHHHHHHHHHHHHhcccccc-CCC--hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHH
Confidence 34555655566654 3444444443311111 011 147899999999999999999999999999876543 3
Q ss_pred hHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhc
Q 037121 454 KVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEE 514 (683)
Q Consensus 454 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~ 514 (683)
+=|- +--.|+++|+.- +.+.|.+|..++..++. .||- ..++..|++-|+.
T Consensus 922 EWMR---IcfeLlelLkah-kK~iRRaa~nTfG~Iak------aIGP-qdVLatLlnnLkv 971 (1172)
T KOG0213|consen 922 EWMR---ICFELLELLKAH-KKEIRRAAVNTFGYIAK------AIGP-QDVLATLLNNLKV 971 (1172)
T ss_pred HHHH---HHHHHHHHHHHH-HHHHHHHHHhhhhHHHH------hcCH-HHHHHHHHhcchH
Confidence 3332 123466777776 78999999999988864 3333 4455555555543
No 211
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.57 E-value=12 Score=41.04 Aligned_cols=229 Identities=12% Similarity=0.111 Sum_probs=137.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcCc---hhhHHHHhcCChHHHHhhcCCC-------CHHHHHHHHHHHHhhccCCc
Q 037121 382 LARRLFFGTNEEKNKAAYEIRLLAKSNI---FNRSCIVESGAIPPLLNLLSSP-------DQCVQENAVAALLKLSKHTS 451 (683)
Q Consensus 382 Lv~~L~s~~~~~~~~a~~~L~~La~~~~---~~r~~i~~~G~i~~Lv~lL~s~-------d~~~q~~A~~aL~nLs~~~~ 451 (683)
+...++..+.+.|..|+--...+++.++ .+|+.+.++=+.+.+=++|.++ |...+.-++++|.-.+.+++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 3445556677888888888888888553 5688899987778888888762 34456677888888888877
Q ss_pred h--hhHHhhcCcHHHHHHHHcCCCCHH------HHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCC-HHHHHH
Q 037121 452 G--KKVIVESGGLKVILKVLKSGLSLE------ARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGT-DCGKKN 522 (683)
Q Consensus 452 ~--r~~i~~~g~i~~Lv~lL~~~~~~e------~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~ 522 (683)
- ...|+. .||.|+.++..+.+.. ..+.+...|..++..+........ .|+++.+..+-.-.+ .....-
T Consensus 96 lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia-~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 96 LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIA-SGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHh-cCchHHHHHHHhCCCCchhHHH
Confidence 5 556654 5899999998753333 677888899999888777777777 899999997643222 122223
Q ss_pred HHHHHHHcc----cCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCCh-------hhHHHHHhcCChHHH
Q 037121 523 AVVAIFGLL----LSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDI-------QGTSTILKTSALPVI 591 (683)
Q Consensus 523 A~~aL~nLs----~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~-------~~~~~i~~~g~i~~L 591 (683)
|+..+.-+. ..++...++... +..+..=+ ...+.....+.+.+|..+-..+ .-+..+.-...-.-+
T Consensus 173 al~Vlll~~~~~~cw~e~~~~flal--i~~va~df-~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~ 249 (698)
T KOG2611|consen 173 ALKVLLLLVSKLDCWSETIERFLAL--IAAVARDF-AVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGV 249 (698)
T ss_pred HHHHHHHHHHhcccCcCCHHHHHHH--HHHHHHHH-HHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHH
Confidence 333332222 222332332221 22222222 1224455667777777443211 111111111112334
Q ss_pred HHhhccCCChHHHHHHHHHHHHHhc
Q 037121 592 IGLLQTLTSRAGKEYCVSILLSLCS 616 (683)
Q Consensus 592 v~lL~~~~s~~~ke~A~~~L~~L~~ 616 (683)
+.+|++.-+|..|..|+....++..
T Consensus 250 ~~IL~~kv~p~qr~pAL~Laa~~~h 274 (698)
T KOG2611|consen 250 VAILQNKVAPSQRLPALILAANMMH 274 (698)
T ss_pred HHHHhcccCchhcChHHHHHHHHHH
Confidence 5567666567777777766655554
No 212
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.45 E-value=5.8 Score=41.85 Aligned_cols=189 Identities=20% Similarity=0.245 Sum_probs=104.8
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhc-cCCChHHHHHhhhcCCHHHHHHHHHHHHHcccC--C-chhhhH
Q 037121 465 ILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGE-TPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLS--Q-GNHQKV 540 (683)
Q Consensus 465 Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~--~-~n~~~i 540 (683)
.+..+... +...|+.+...+.++.........+.. ....+..+.+.++.+..+-+..|+.++.-|+.. . +....+
T Consensus 48 ~Id~l~eK-~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 48 AIDLLTEK-SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 33344444 567888888888877654333222221 123567777888887776666777777766655 2 234444
Q ss_pred hhcCcHHHHHHHHccCC-ChhHHHHHHHHHHHhh---C-ChhhHHHHHhcCChHHHHH--hhcc-C--------CChHHH
Q 037121 541 LDAGTVPLLADILASSN-RTELITDSLAVLANLA---E-DIQGTSTILKTSALPVIIG--LLQT-L--------TSRAGK 604 (683)
Q Consensus 541 v~~g~v~~Lv~lL~~~~-~~~~~~~al~iL~nLa---~-~~~~~~~i~~~g~i~~Lv~--lL~~-~--------~s~~~k 604 (683)
.+ ...|.|...+.... ....+..|+.+|+.++ . .++.....++ .+..+.. +.+. + .++...
T Consensus 127 ~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 127 FE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 44 47888888884332 3345455555555554 2 2222221111 1111111 1111 1 123344
Q ss_pred HHHH---HHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhh
Q 037121 605 EYCV---SILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFI 662 (683)
Q Consensus 605 e~A~---~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 662 (683)
-.|+ +.|+..+. ...+...+. ..++.|..+|.+.+..+|..|...|.+|-+..
T Consensus 204 ~aAL~aW~lLlt~~~--~~~~~~~~~---~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 204 AAALSAWALLLTTLP--DSKLEDLLE---EALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HHHHHHHHHHHhcCC--HHHHHHHHH---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 4444 34333332 233443333 34999999999999999999999998885543
No 213
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.42 E-value=0.55 Score=40.35 Aligned_cols=69 Identities=20% Similarity=0.348 Sum_probs=55.7
Q ss_pred ChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHH
Q 037121 587 ALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILH 659 (683)
Q Consensus 587 ~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~ 659 (683)
.++.++..+... +.++|.+|+.+|.+++.........-. ..++..|..++.+.++.+|..|.-+-+.|.
T Consensus 28 Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f---~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 28 ILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYF---NEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 467888888877 899999999999999987655544433 457999999999999999988877777664
No 214
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.41 E-value=3.3 Score=43.42 Aligned_cols=190 Identities=18% Similarity=0.161 Sum_probs=121.0
Q ss_pred CChHHHH-hhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHH-
Q 037121 419 GAIPPLL-NLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRK- 496 (683)
Q Consensus 419 G~i~~Lv-~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~- 496 (683)
|.+..|+ ..+.+.++.+++.|+.+|+-.+..+.. +. ...++.+...++.+ +.+++..|+.+++.+....+...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~---~a-~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE---LA-KEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH---HH-HHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchhc
Confidence 3344443 677889999999999999999876552 22 12367788888777 89999999999999876432111
Q ss_pred --------HhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccC---CChhHHHHH
Q 037121 497 --------LIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASS---NRTELITDS 565 (683)
Q Consensus 497 --------~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~---~~~~~~~~a 565 (683)
.... ...+..+.+.+.+.++.++..|+..++.|........ ...++..|+-+..+. ++..++..-
T Consensus 101 ~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 101 DSESDNDESVDS-KSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred cchhccCccchH-hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 1112 4577788888888899999999999999887654433 134455555544121 234444433
Q ss_pred HHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCC---hH---HHHHHHHHHHHHhcC
Q 037121 566 LAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTS---RA---GKEYCVSILLSLCSN 617 (683)
Q Consensus 566 l~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s---~~---~ke~A~~~L~~L~~~ 617 (683)
-..+-..|......+..+....++.+-.+.+...+ +. .-...+..+..++..
T Consensus 177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~ 234 (298)
T PF12719_consen 177 SVFFPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDP 234 (298)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCCh
Confidence 33444556654444556666778888777766421 11 123455556666664
No 215
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.34 E-value=6.6 Score=45.40 Aligned_cols=209 Identities=15% Similarity=0.143 Sum_probs=139.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhc
Q 037121 380 RFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVES 459 (683)
Q Consensus 380 ~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~ 459 (683)
..|.+.|.+.....+++|.+.|-.+...+.+. ....|..|+...+.|.+++.-.---|..-+...++-..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---
Confidence 45677888888888999988776655544442 245688999999999999987777777777665553222
Q ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCC-chhh
Q 037121 460 GGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ-GNHQ 538 (683)
Q Consensus 460 g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n~~ 538 (683)
-|..+-+-|+.+ ++.+|..|..+|..+=.. +.. +-.+-++-+...+..+.+++.|+.|+-.|=+-+ +.+.
T Consensus 109 -SIntfQk~L~Dp-N~LiRasALRvlSsIRvp------~Ia-PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 109 -SINTFQKALKDP-NQLIRASALRVLSSIRVP------MIA-PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred -eHHHHHhhhcCC-cHHHHHHHHHHHHhcchh------hHH-HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH
Confidence 356666778888 888888888877766321 111 112222333445667899999999988775543 3344
Q ss_pred hHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcC
Q 037121 539 KVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSN 617 (683)
Q Consensus 539 ~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~ 617 (683)
.++ +.+=.+| .+.++.++..|+.+..-+|- +.-..|. +-...|.++|..- +.+.|-..+..|..-|++
T Consensus 180 qL~-----e~I~~LL-aD~splVvgsAv~AF~evCP--erldLIH--knyrklC~ll~dv-deWgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 180 QLE-----EVIKKLL-ADRSPLVVGSAVMAFEEVCP--ERLDLIH--KNYRKLCRLLPDV-DEWGQVVLINMLTRYARH 247 (968)
T ss_pred HHH-----HHHHHHh-cCCCCcchhHHHHHHHHhch--hHHHHhh--HHHHHHHhhccch-hhhhHHHHHHHHHHHHHh
Confidence 433 3344455 78889999999999887764 2222222 3456777777655 677888888887776654
No 216
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.31 E-value=0.083 Score=54.27 Aligned_cols=47 Identities=19% Similarity=0.173 Sum_probs=40.0
Q ss_pred CCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCccc
Q 037121 277 PEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKL 324 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l 324 (683)
.++-.||||.---...|..||||.-|..||.+++-. .+.|=.|+...
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv 466 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTV 466 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEeccee
Confidence 468899999988888899999999999999999986 66777776543
No 217
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.26 E-value=0.42 Score=41.12 Aligned_cols=70 Identities=10% Similarity=0.127 Sum_probs=51.3
Q ss_pred CCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhh
Q 037121 502 PKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA 573 (683)
Q Consensus 502 ~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa 573 (683)
...+|+++..+.+.+.+++..|+.+|+|++....+...-.-..+++.|.+++ .++++.++. ++..|.+|-
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~-~D~d~~Vr~-~a~~Ld~ll 95 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLS-ADPDENVRS-AAELLDRLL 95 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchhHHH-HHHHHHHHh
Confidence 3478899999999999999999999999987654322212235778888888 777777765 446666553
No 218
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=92.15 E-value=15 Score=37.32 Aligned_cols=198 Identities=17% Similarity=0.189 Sum_probs=116.8
Q ss_pred hcCChHHHHhhcCC--CCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchh
Q 037121 417 ESGAIPPLLNLLSS--PDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGY 494 (683)
Q Consensus 417 ~~G~i~~Lv~lL~s--~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~ 494 (683)
...++|.|+..|.. ..+-++..|..+|+++- + .+.++.+-+..+.+ ..++++.+.-++..+-..+..
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp-~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDP-CKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCC-ccccchHHHHHHHHHHHhhcc
Confidence 34688999998876 45678889999998886 3 33445555555444 677888777777777542211
Q ss_pred HH-----Hhhc-------cCCChHHHHHhhhcCCHHH--HHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChh
Q 037121 495 RK-----LIGE-------TPKAIPALVKLIEEGTDCG--KKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTE 560 (683)
Q Consensus 495 ~~-----~i~~-------~~g~i~~Lv~lL~~~~~~~--~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~ 560 (683)
.. .... ..+-+..|-..|.+.+... +..|+-.|.|+-.. .+|..|++-+ ..++.-
T Consensus 134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E----------eaI~al~~~l-~~~Sal 202 (289)
T KOG0567|consen 134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE----------EAINALIDGL-ADDSAL 202 (289)
T ss_pred ccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH----------HHHHHHHHhc-ccchHH
Confidence 10 0000 0122334444333333222 22333334333211 2455566666 455777
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhcc-CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHh
Q 037121 561 LITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQT-LTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSL 639 (683)
Q Consensus 561 ~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~L 639 (683)
.+..+..+|+.|-+ --+|+.|.+.|.. ...+.+|..|+.+|..++. +++..++ .++
T Consensus 203 frhEvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~---e~~~~vL----------~e~ 259 (289)
T KOG0567|consen 203 FRHEVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD---EDCVEVL----------KEY 259 (289)
T ss_pred HHHHHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC---HHHHHHH----------HHH
Confidence 77888888876533 2358888885544 3367899999999987765 4554444 456
Q ss_pred HhcCCHHHHHHHHHHHHHHH
Q 037121 640 TTDGTSQARKKARSLIKILH 659 (683)
Q Consensus 640 l~~g~~~~k~~A~~lL~~l~ 659 (683)
+.+..+-+++.+...|.++.
T Consensus 260 ~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 260 LGDEERVVRESCEVALDMLE 279 (289)
T ss_pred cCCcHHHHHHHHHHHHHHHH
Confidence 67667777777666666543
No 219
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.15 E-value=0.88 Score=43.96 Aligned_cols=109 Identities=20% Similarity=0.284 Sum_probs=79.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCch-hhHHHHhcCChHHHHhhcCC---------CCHHHHHHHHHHHHhhc
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIF-NRSCIVESGAIPPLLNLLSS---------PDQCVQENAVAALLKLS 447 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s---------~d~~~q~~A~~aL~nLs 447 (683)
....++..|.+++... +.+..|+..-+.++. --..|.+.|++..|+.+|.. .+...+..++.+|..|.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 4567788887765443 555555655554433 34567778999999998853 45688999999999999
Q ss_pred cCCchhhHHh-hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Q 037121 448 KHTSGKKVIV-ESGGLKVILKVLKSGLSLEARQIAAATLFYLT 489 (683)
Q Consensus 448 ~~~~~r~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls 489 (683)
.+..+...++ ..+++..|+..|.+. +..++..++.+|..+|
T Consensus 145 n~~~G~~~v~~~~~~v~~i~~~L~s~-~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NTKYGLEAVLSHPDSVNLIALSLDSP-NIKTRKLALEILAALC 186 (187)
T ss_dssp SSHHHHHHHHCSSSHHHHHHHT--TT-SHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence 8888877777 688999999999988 8999999999998876
No 220
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=91.99 E-value=8 Score=41.20 Aligned_cols=219 Identities=15% Similarity=0.122 Sum_probs=152.8
Q ss_pred HHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch-hh-----HHh-h-cCcHHHHHHHHcCCCCHHHHHHHHHHH
Q 037121 414 CIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KK-----VIV-E-SGGLKVILKVLKSGLSLEARQIAAATL 485 (683)
Q Consensus 414 ~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~-r~-----~i~-~-~g~i~~Lv~lL~~~~~~e~~~~Aa~~L 485 (683)
.+...|.++.|+..|..-+-+.+..++.+..++-....+ +. .+. . ...+..|+.--. +++.--.+...|
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~ml 147 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDML 147 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHHH
Confidence 455679999999999999999999999999998765433 22 232 2 233333333333 345667778888
Q ss_pred HHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccC-CchhhhHhhcC---cHHHHHHHHccCCChhH
Q 037121 486 FYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLS-QGNHQKVLDAG---TVPLLADILASSNRTEL 561 (683)
Q Consensus 486 ~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~~g---~v~~Lv~lL~~~~~~~~ 561 (683)
......+.....+.. +..+-.+.+.+..++=++..+|..++..|... ..-...+.... .+.....+| .+++--+
T Consensus 148 Rec~k~e~l~~~iL~-~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll-~s~NYvt 225 (335)
T PF08569_consen 148 RECIKHESLAKIILY-SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLL-ESSNYVT 225 (335)
T ss_dssp HHHTTSHHHHHHHHT-SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHC-T-SSHHH
T ss_pred HHHHhhHHHHHHHhC-cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc-cCCCeEe
Confidence 888888777777777 88888899999988889999999999986654 33445555443 456677777 7778889
Q ss_pred HHHHHHHHHHhhCChhhHHHH---HhcC-ChHHHHHhhccCCChHHHHHHHHHHHHHhcCCh--HHHHHHHhcCCCcHHH
Q 037121 562 ITDSLAVLANLAEDIQGTSTI---LKTS-ALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAR--EEVTASLAKDPSLMNS 635 (683)
Q Consensus 562 ~~~al~iL~nLa~~~~~~~~i---~~~g-~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~--~~~~~~l~~~~g~i~~ 635 (683)
+..++..|+.|-.++.+...+ ++.. -+..++.+|++. +...+-.|.-+.--+..++. ..+...+.. . =..
T Consensus 226 krqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~-N--r~k 301 (335)
T PF08569_consen 226 KRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANPNKPPPIVDILIK-N--REK 301 (335)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHHHHHHHH-T--HHH
T ss_pred ehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCCCCChHHHHHHHH-H--HHH
Confidence 999999999998766665543 3333 378888899987 88999999999877776542 567777765 3 455
Q ss_pred HHHhHh
Q 037121 636 LYSLTT 641 (683)
Q Consensus 636 L~~Ll~ 641 (683)
|+..+.
T Consensus 302 Ll~fl~ 307 (335)
T PF08569_consen 302 LLRFLK 307 (335)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 221
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.89 E-value=0.14 Score=50.40 Aligned_cols=50 Identities=14% Similarity=0.329 Sum_probs=40.8
Q ss_pred CCCccCCCCcccCCCce----eccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCC
Q 037121 277 PEDFRCPISLELMTDPV----TVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTEL 329 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv----~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l 329 (683)
...|.|||++-.|.+-. +.+|||.|.-..+.+.- ...|++|++.+..++.
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDV 162 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCe
Confidence 56899999999998765 34899999988777654 5689999999887764
No 222
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.88 E-value=0.1 Score=54.41 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=37.9
Q ss_pred CccCCCCcccCCCceeccCccc-ccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 279 DFRCPISLELMTDPVTVSTGQT-YDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv~~~cght-~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
--.|-||+.--+|-+++||-|. .|..|-.... -.+..||+||+++.
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchH
Confidence 4689999999999999999995 6888866544 34678999999764
No 223
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.72 E-value=4.8 Score=46.52 Aligned_cols=244 Identities=18% Similarity=0.166 Sum_probs=151.2
Q ss_pred HHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHH-hhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHH
Q 037121 403 LLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALL-KLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIA 481 (683)
Q Consensus 403 ~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~-nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~A 481 (683)
.++.....-|...+..|+...|+.+..........++..+|. .++.... + ...+++++.+.+.+.......-.+
T Consensus 488 ~~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~-~----~~~v~~~~~s~~~~d~~~~en~E~ 562 (748)
T KOG4151|consen 488 YLAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE-R----SYEVVKPLDSALHNDEKGLENFEA 562 (748)
T ss_pred HHhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC-c----hhhhhhhhcchhhhhHHHHHHHHH
Confidence 333334556777888899999999998888888888888776 2222111 1 123455555555543222223457
Q ss_pred HHHHHHhccCch-hHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhh-hHhh-cCcHHHHHHHHccCCC
Q 037121 482 AATLFYLTSVKG-YRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQ-KVLD-AGTVPLLADILASSNR 558 (683)
Q Consensus 482 a~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~-~iv~-~g~v~~Lv~lL~~~~~ 558 (683)
+-++.||++.++ .+..|.. .-+++.+-.++..+++..+..++..+.||..++.-.. .+++ ...++.....+ ....
T Consensus 563 L~altnLas~s~s~r~~i~k-e~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~-e~~~ 640 (748)
T KOG4151|consen 563 LEALTNLASISESDRQKILK-EKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNL-EVAD 640 (748)
T ss_pred HHHhhcccCcchhhHHHHHH-HhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHH-Hhhh
Confidence 788888887554 4555665 4556666666777889999999999999999877543 3344 24455555555 3344
Q ss_pred hhHHHHHHHHHHHhhCChhhHHH-HH-hcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHH
Q 037121 559 TELITDSLAVLANLAEDIQGTST-IL-KTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSL 636 (683)
Q Consensus 559 ~~~~~~al~iL~nLa~~~~~~~~-i~-~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L 636 (683)
....-++.+.+..+....++.-. +. -..+...++.++.++ +...+...+.+.+|+... ..++...+++ ...++.+
T Consensus 641 E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~-~~ei~~~~~~-~~~~~~l 717 (748)
T KOG4151|consen 641 EKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEA-LFEIAEKIFE-TEVMELL 717 (748)
T ss_pred hHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHH-HHHHHHHhcc-chHHHHH
Confidence 55555666666655443332222 32 334567778888887 888888888888885544 4677777776 5567766
Q ss_pred HHhHhcCCHHHHHHHHHHHH
Q 037121 637 YSLTTDGTSQARKKARSLIK 656 (683)
Q Consensus 637 ~~Ll~~g~~~~k~~A~~lL~ 656 (683)
..+-.-.....++.|...|.
T Consensus 718 ~~~~~~~~a~~~~~~~~~l~ 737 (748)
T KOG4151|consen 718 SGLQKLNRAPKREDAAPCLS 737 (748)
T ss_pred HHHHHhhhhhhhhhhhhHHH
Confidence 66544333333444444443
No 224
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.51 E-value=0.097 Score=54.55 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=37.5
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
+.|..-.|.||.+-.++-+.++|||+.| |+.-.. ....||.|++.+.
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK--HLPQCPVCRQRIR 347 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEE--chHHHh--hCCCCchhHHHHH
Confidence 5667779999999999999999999988 655433 2567999998653
No 225
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=91.51 E-value=5.4 Score=48.19 Aligned_cols=266 Identities=14% Similarity=0.069 Sum_probs=148.0
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhcc----CCchh
Q 037121 379 SRFLARRLFFG-TNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSK----HTSGK 453 (683)
Q Consensus 379 i~~Lv~~L~s~-~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~----~~~~r 453 (683)
+..+...+..- ..+.+.+|+..|+.++..-.. ...-..++|.++.++.+...++|..|+.+|..+-. -+.+-
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 34444444332 457789999999999874321 12224678999999999999999999998876632 12223
Q ss_pred hHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc------------------hhHHHhhc--cCC-------ChH
Q 037121 454 KVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVK------------------GYRKLIGE--TPK-------AIP 506 (683)
Q Consensus 454 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~------------------~~~~~i~~--~~g-------~i~ 506 (683)
..|.-.=.+|.|-.++.+....-+|..-|..|..|+... .+-..... ... .+.
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~ 580 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVE 580 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHH
Confidence 344445567777777776323334443333343333210 00000000 000 111
Q ss_pred -HHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhc----CcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHH
Q 037121 507 -ALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDA----GTVPLLADILASSNRTELITDSLAVLANLAEDIQGTST 581 (683)
Q Consensus 507 -~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~----g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~ 581 (683)
..+.++.+.++-++..-+..|.-||.. +.+. =+++.|+..| ++.+..++..-..-+.-+|..- |.+.
T Consensus 581 ~~v~sLlsd~~~~Vkr~Lle~i~~LC~F------FGk~ksND~iLshLiTfL-NDkDw~LR~aFfdsI~gvsi~V-G~rs 652 (1431)
T KOG1240|consen 581 QMVSSLLSDSPPIVKRALLESIIPLCVF------FGKEKSNDVILSHLITFL-NDKDWRLRGAFFDSIVGVSIFV-GWRS 652 (1431)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHH------hhhcccccchHHHHHHHh-cCccHHHHHHHHhhccceEEEE-eeee
Confidence 222333333334444444455555431 1111 1456677777 6665555554444333333211 1110
Q ss_pred HHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHh
Q 037121 582 ILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 582 i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 661 (683)
.+.+.+|.|.+-|..+ .+.+-..|+++|.-||..+- ..+... ..++.....++-+.+.-+|+.++.++....+.
T Consensus 653 -~seyllPLl~Q~ltD~-EE~Viv~aL~~ls~Lik~~l--l~K~~v--~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 653 -VSEYLLPLLQQGLTDG-EEAVIVSALGSLSILIKLGL--LRKPAV--KDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred -HHHHHHHHHHHhccCc-chhhHHHHHHHHHHHHHhcc--cchHHH--HHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 2335577787878777 88899999999999998752 112111 12355566677888999999999877765543
No 226
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=91.50 E-value=0.059 Score=52.41 Aligned_cols=47 Identities=23% Similarity=0.473 Sum_probs=36.9
Q ss_pred CccCCCCc-ccCCCcee--c--c-CcccccHHHHHHHHHhCCCCCC--CCCcccC
Q 037121 279 DFRCPISL-ELMTDPVT--V--S-TGQTYDRSSIQKWLKAGNMLCP--KTGEKLT 325 (683)
Q Consensus 279 ~f~CpIc~-~~m~dPv~--~--~-cght~~r~cI~~w~~~~~~~CP--~c~~~l~ 325 (683)
+-.||+|. +.+-+|-+ + | |-|..|-+|+.+-|..|...|| -|++.|.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 56899997 44445532 2 4 9999999999999999999999 5876554
No 227
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.47 E-value=0.041 Score=63.59 Aligned_cols=47 Identities=17% Similarity=0.353 Sum_probs=39.7
Q ss_pred ccCCCCcccCCCceeccCcccccHHHHHHHHHhC-CCCCCCCCcccCCC
Q 037121 280 FRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAG-NMLCPKTGEKLTNT 327 (683)
Q Consensus 280 f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~-~~~CP~c~~~l~~~ 327 (683)
+.|++|.+ ..+++++.|||.||+.|+...+..- ...||.|+..+...
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 99999999 8888899999999999999988763 34699998766543
No 228
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.36 E-value=5.8 Score=47.85 Aligned_cols=226 Identities=18% Similarity=0.164 Sum_probs=122.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcCchhhHHHHhc--CChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch-hhHHhhcCcHHH
Q 037121 388 FGTNEEKNKAAYEIRLLAKSNIFNRSCIVES--GAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KKVIVESGGLKV 464 (683)
Q Consensus 388 s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~--G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~-r~~i~~~g~i~~ 464 (683)
+.+..+|.++-+.|..++.. +......... .....|..-..+.+..+|..++.+|..|-....+ -..++..-+.+.
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~Ev 743 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEV 743 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34778999999999998875 2211111110 1122333444445566666666666665433222 222222333344
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhcc----CchhHHHhhccCCChHHHHHhhhcC----CHHHHHHHHHHHHHcccCCch
Q 037121 465 ILKVLKSGLSLEARQIAAATLFYLTS----VKGYRKLIGETPKAIPALVKLIEEG----TDCGKKNAVVAIFGLLLSQGN 536 (683)
Q Consensus 465 Lv~lL~~~~~~e~~~~Aa~~L~~Ls~----~~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~A~~aL~nLs~~~~n 536 (683)
|+.. +.. +...|++|..+|..+.. .+..... . ...|...+..+..+ .......-+.++..+.....
T Consensus 744 IL~~-Ke~-n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~-~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~- 817 (1176)
T KOG1248|consen 744 ILSL-KEV-NVKARRNAFALLVFIGAIQSSLDDGNEP--A-SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK- 817 (1176)
T ss_pred HHhc-ccc-cHHHHhhHHHHHHHHHHHHhhhcccccc--h-HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh-
Confidence 4444 444 88999999999999983 1110000 0 12444455544433 22222222455555544322
Q ss_pred hhhHhhcCcHHH----HHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHH
Q 037121 537 HQKVLDAGTVPL----LADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSIL 611 (683)
Q Consensus 537 ~~~iv~~g~v~~----Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L 611 (683)
.+.+.+.++. +.-.| .+++++++..|++.+..++. -|+....-.....++.+..+++.. ....+-..-..|
T Consensus 818 --~~ld~~~l~~li~~V~~~L-~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~Ll 893 (1176)
T KOG1248|consen 818 --NILDDETLEKLISMVCLYL-ASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLLL 893 (1176)
T ss_pred --ccccHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHHH
Confidence 2233333444 44445 67889999999999999985 454333333323577777777765 566777777777
Q ss_pred HHHhcCChHHHHH
Q 037121 612 LSLCSNAREEVTA 624 (683)
Q Consensus 612 ~~L~~~~~~~~~~ 624 (683)
-.|++..+.+..+
T Consensus 894 ekLirkfg~~eLe 906 (1176)
T KOG1248|consen 894 EKLIRKFGAEELE 906 (1176)
T ss_pred HHHHHHhCHHHHH
Confidence 7777754443333
No 229
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=91.29 E-value=8 Score=40.79 Aligned_cols=184 Identities=20% Similarity=0.241 Sum_probs=102.6
Q ss_pred hhcCCCCHHHHHHHHHHHHhhccCCchhhHHh--hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC---chhHHHhhc
Q 037121 426 NLLSSPDQCVQENAVAALLKLSKHTSGKKVIV--ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSV---KGYRKLIGE 500 (683)
Q Consensus 426 ~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~--~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~---~~~~~~i~~ 500 (683)
..|.......++.|+..+.++.....--+.+. ....++.+.+.++.| ..+-+..|+.++.-++.. .+....+..
T Consensus 50 d~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~ 128 (309)
T PF05004_consen 50 DLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDSEEIFE 128 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Confidence 33444556777777777777654333222222 234678888889988 445555666666555543 233444443
Q ss_pred cCCChHHHHHhhhcCCH--HHHHHHHHHHHHcccCCc----hhhhHhhcCcHHHH--HHHHccC---------CChhHHH
Q 037121 501 TPKAIPALVKLIEEGTD--CGKKNAVVAIFGLLLSQG----NHQKVLDAGTVPLL--ADILASS---------NRTELIT 563 (683)
Q Consensus 501 ~~g~i~~Lv~lL~~~~~--~~~~~A~~aL~nLs~~~~----n~~~iv~~g~v~~L--v~lL~~~---------~~~~~~~ 563 (683)
...|.|...+.+++. ..+..++.+|.-++.... ...... ..++.+ ...++.+ +++.+..
T Consensus 129 --~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 129 --ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred --HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 478888888887653 344455555554443211 111111 112211 1112111 2356888
Q ss_pred HHHHHHHHhhC-Chhh-HHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 037121 564 DSLAVLANLAE-DIQG-TSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCS 616 (683)
Q Consensus 564 ~al~iL~nLa~-~~~~-~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~ 616 (683)
.|+..-+.|.. .+.. ..... ...++.|+.+|++. +..+|-.|-.+|.-|..
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 88888777764 3332 22222 24589999999987 88888888777765543
No 230
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=91.07 E-value=0.64 Score=43.84 Aligned_cols=147 Identities=19% Similarity=0.133 Sum_probs=93.2
Q ss_pred cHHHHHHHHcC-CCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCc-hh-
Q 037121 461 GLKVILKVLKS-GLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQG-NH- 537 (683)
Q Consensus 461 ~i~~Lv~lL~~-~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~- 537 (683)
.++.++..|.. ..+.++|..|+-++..+- +..+..... -+-..+-.++..++......+..++..|-.... ..
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~--~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE--KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH--HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 35566666664 336678888888887773 333333222 122333334444444466667777776665443 33
Q ss_pred hhHhhcCcHHHHHHHHc-cCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChH-HHHHHHHHHH
Q 037121 538 QKVLDAGTVPLLADILA-SSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRA-GKEYCVSILL 612 (683)
Q Consensus 538 ~~iv~~g~v~~Lv~lL~-~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~-~ke~A~~~L~ 612 (683)
..+...|.++.++.+.. ...+..+...++.+|..-|.+...|..|.+ .+++-|-++.+.+.++. .|..|+-+|+
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 44457799999999993 267788888899999888888777777776 66788888886542444 5777766654
No 231
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.87 E-value=0.46 Score=42.24 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=61.0
Q ss_pred hhhhHhhc--CcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHH
Q 037121 536 NHQKVLDA--GTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILL 612 (683)
Q Consensus 536 n~~~iv~~--g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~ 612 (683)
|..++-+. .++..|+++|..+.++.+..-|+.=|+.++. .|.||..+-+.|+=..++++|.+. ++.++..|+.++.
T Consensus 33 Na~kf~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQ 111 (119)
T PF11698_consen 33 NADKFEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE-DPEVRYEALLAVQ 111 (119)
T ss_dssp HSGGGSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 34444333 3678899999555577777778888888885 799999998888888999999998 9999999999987
Q ss_pred HHhc
Q 037121 613 SLCS 616 (683)
Q Consensus 613 ~L~~ 616 (683)
.+..
T Consensus 112 klm~ 115 (119)
T PF11698_consen 112 KLMV 115 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 232
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=90.79 E-value=8.3 Score=43.77 Aligned_cols=173 Identities=16% Similarity=0.091 Sum_probs=109.5
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHH---hcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcC
Q 037121 384 RRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIV---ESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESG 460 (683)
Q Consensus 384 ~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~---~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g 460 (683)
..+-.-+++.+.=|+..||.+.++..-+-..+- .+.++..++..+. .++..+.-++++|.|+-.++.+++.+...
T Consensus 551 ~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~- 628 (745)
T KOG0301|consen 551 AILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR- 628 (745)
T ss_pred HHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH-
Confidence 444455788888999999999987655443333 1235666666666 67888999999999999998888877743
Q ss_pred cHHHHHHH---HcCCCCHHHHHHHHHHHHHhccC--chhHHHhhccCCChHHHHHhhhc-----CCHHHHHHHHHHHHHc
Q 037121 461 GLKVILKV---LKSGLSLEARQIAAATLFYLTSV--KGYRKLIGETPKAIPALVKLIEE-----GTDCGKKNAVVAIFGL 530 (683)
Q Consensus 461 ~i~~Lv~l---L~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~A~~aL~nL 530 (683)
...+... .+.+.+..+....+.+.+|++.. ..+.. .+..+.|...+.. .+-+..-..+.||.+|
T Consensus 629 -~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~-----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL 702 (745)
T KOG0301|consen 629 -LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ-----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTL 702 (745)
T ss_pred -HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhh
Confidence 3333332 23332445555555555666542 11111 3445555444432 2234566788999999
Q ss_pred ccCCchhhhHhhcCcHHHHHHHHccCCChhHHHH
Q 037121 531 LLSQGNHQKVLDAGTVPLLADILASSNRTELITD 564 (683)
Q Consensus 531 s~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~ 564 (683)
+..+.+..++...--|..+++-++...+......
T Consensus 703 ~t~~~~~~~~A~~~~v~sia~~~~~~~~~~~~k~ 736 (745)
T KOG0301|consen 703 MTVDASVIQLAKNRSVDSIAKKLKEAVSNPSGKN 736 (745)
T ss_pred ccccHHHHHHHHhcCHHHHHHHHHHhccCchhhH
Confidence 9999888888877778888888754333333333
No 233
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.74 E-value=0.31 Score=32.16 Aligned_cols=29 Identities=34% Similarity=0.580 Sum_probs=25.6
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHhhccC
Q 037121 421 IPPLLNLLSSPDQCVQENAVAALLKLSKH 449 (683)
Q Consensus 421 i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~ 449 (683)
+|.+++++.+++++++..|+.+|++++.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999998753
No 234
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=90.69 E-value=5.4 Score=46.62 Aligned_cols=141 Identities=17% Similarity=0.080 Sum_probs=89.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIV 457 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~ 457 (683)
..+.+++...+.+.+.++-.-..|...++.+++- ++ =++..+.+=|.++|+.+|-.|+.+|.-+-.. =+
T Consensus 56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~l---LavNti~kDl~d~N~~iR~~AlR~ls~l~~~------el 124 (757)
T COG5096 56 LFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--AL---LAVNTIQKDLQDPNEEIRGFALRTLSLLRVK------EL 124 (757)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HH---HHHHHHHhhccCCCHHHHHHHHHHHHhcChH------HH
Confidence 3455556666666666666655666666655521 11 1345666667778888888887777665311 11
Q ss_pred hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccC
Q 037121 458 ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLS 533 (683)
Q Consensus 458 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 533 (683)
-..+++++.+++..+ +..+|.+|+-+++++=..+. ..... .|.+..+..++.+.++.++.+|+.+|..+...
T Consensus 125 ~~~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld~--~l~~~-~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 125 LGNIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLDK--DLYHE-LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcCH--hhhhc-ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 123567777777777 77888888888877754321 22222 56777777777777888888888888777554
No 235
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=90.68 E-value=2.6 Score=42.82 Aligned_cols=96 Identities=21% Similarity=0.210 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcC-CCCHHHHHHHHHHHHhhc-cCCchhhHHhhcCcHHHHHHHHcC
Q 037121 394 KNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLS-SPDQCVQENAVAALLKLS-KHTSGKKVIVESGGLKVILKVLKS 471 (683)
Q Consensus 394 ~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~d~~~q~~A~~aL~nLs-~~~~~r~~i~~~g~i~~Lv~lL~~ 471 (683)
...|+..|.-++--++..|..+.....+..|+.+|. +.++.++..++.+|..+- .++.|...+-+.+|+..++.++++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 455777788778778999999999999999999994 478999999999997765 556777777789999999999997
Q ss_pred C-CCHHHHHHHHHHHHHhc
Q 037121 472 G-LSLEARQIAAATLFYLT 489 (683)
Q Consensus 472 ~-~~~e~~~~Aa~~L~~Ls 489 (683)
. .+.+++-.+..+|.-..
T Consensus 188 ~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 188 KSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred ccccHHHhHHHHHHHHHHH
Confidence 4 35677777777765443
No 236
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.55 E-value=0.13 Score=40.87 Aligned_cols=49 Identities=24% Similarity=0.379 Sum_probs=34.5
Q ss_pred CCCccCCCCcccCCC-ceec-cCcccccHHHHHHHHHh--CCCCCCCCCcccC
Q 037121 277 PEDFRCPISLELMTD-PVTV-STGQTYDRSSIQKWLKA--GNMLCPKTGEKLT 325 (683)
Q Consensus 277 ~~~f~CpIc~~~m~d-Pv~~-~cght~~r~cI~~w~~~--~~~~CP~c~~~l~ 325 (683)
|-+-.||-|.-.=-| |.+. -|.|.|-..||.+|+.. ....||.||+...
T Consensus 29 ~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 29 PFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 444556666544433 3333 69999999999999986 4568999998653
No 237
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=90.32 E-value=12 Score=35.82 Aligned_cols=91 Identities=18% Similarity=0.155 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCc-HHHHHHHH
Q 037121 475 LEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGT-VPLLADIL 553 (683)
Q Consensus 475 ~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~-v~~Lv~lL 553 (683)
+.+|-++..++..|+....+- . ...+|.+...|.++++.+++.|+.+|..|...+-.+.+ |- +..++.++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~---v--e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~l 72 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNL---V--EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKLL 72 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHH---H--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHHH
Confidence 578899999999998754322 1 35788999999999999999999999999876543332 33 37778888
Q ss_pred ccCCChhHHHHHHHHHHHhhCC
Q 037121 554 ASSNRTELITDSLAVLANLAED 575 (683)
Q Consensus 554 ~~~~~~~~~~~al~iL~nLa~~ 575 (683)
.+++++++..|..++..+...
T Consensus 73 -~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 -VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred -cCCCHHHHHHHHHHHHHHHHh
Confidence 888999999999999988754
No 238
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.23 E-value=7.9 Score=44.57 Aligned_cols=202 Identities=19% Similarity=0.209 Sum_probs=102.7
Q ss_pred CHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCc------------------
Q 037121 390 TNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTS------------------ 451 (683)
Q Consensus 390 ~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~------------------ 451 (683)
++..|...+..|+..+..++.-+.. .|..+..+|.+.+..+.-.|+++|.+||.++.
T Consensus 219 ~~~LqlViVE~Irkv~~~~p~~~~~-----~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesd 293 (948)
T KOG1058|consen 219 NDSLQLVIVELIRKVCLANPAEKAR-----YIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESD 293 (948)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHhhH-----HHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccC
Confidence 4566777777777777766554433 34667777766555555555555554443332
Q ss_pred hhhHHh--------h-------cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhc--
Q 037121 452 GKKVIV--------E-------SGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEE-- 514 (683)
Q Consensus 452 ~r~~i~--------~-------~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-- 514 (683)
|..+++ . .|.+--++.+|+++ +.+++..+..+.+.|+... -+.-++.+|+.
T Consensus 294 nnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~-dldvr~Ktldi~ldLvssr-----------Nvediv~~Lkke~ 361 (948)
T KOG1058|consen 294 NNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSP-DLDVRSKTLDIALDLVSSR-----------NVEDIVQFLKKEV 361 (948)
T ss_pred cchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcc-cccHHHHHHHHHHhhhhhc-----------cHHHHHHHHHHHH
Confidence 211111 0 11222233344444 5555555555555555432 22223333321
Q ss_pred ---------CCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhh-CChhhHHHHHh
Q 037121 515 ---------GTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA-EDIQGTSTILK 584 (683)
Q Consensus 515 ---------~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa-~~~~~~~~i~~ 584 (683)
++..-+..-..++...+..-. -+.+.+|+.|++.| ++.++......+..+.-.- ..|.-|..|
T Consensus 362 ~kT~~~e~d~~~~yRqlLiktih~cav~Fp----~~aatvV~~ll~fi-sD~N~~aas~vl~FvrE~iek~p~Lr~~i-- 434 (948)
T KOG1058|consen 362 MKTHNEESDDNGKYRQLLIKTIHACAVKFP----EVAATVVSLLLDFI-SDSNEAAASDVLMFVREAIEKFPNLRASI-- 434 (948)
T ss_pred HhccccccccchHHHHHHHHHHHHHhhcCh----HHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHhCchHHHHH--
Confidence 011224444555555544211 12345788899999 6666665555555554332 234444433
Q ss_pred cCChHHHHHhhccCCChHHHHHHHHHHHHHhcCC
Q 037121 585 TSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNA 618 (683)
Q Consensus 585 ~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~ 618 (683)
+..|++-+..-.+.+.-+.|++++..-|...
T Consensus 435 ---i~~l~~~~~~irS~ki~rgalwi~GeYce~~ 465 (948)
T KOG1058|consen 435 ---IEKLLETFPQIRSSKICRGALWILGEYCEGL 465 (948)
T ss_pred ---HHHHHHhhhhhcccccchhHHHHHHHHHhhh
Confidence 3455553332225677788888888888765
No 239
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=89.96 E-value=0.83 Score=45.47 Aligned_cols=91 Identities=19% Similarity=0.262 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHhhCChhhHHHHHhcCChH-------HHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCc
Q 037121 560 ELITDSLAVLANLAEDIQGTSTILKTSALP-------VIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSL 632 (683)
Q Consensus 560 ~~~~~al~iL~nLa~~~~~~~~i~~~g~i~-------~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~ 632 (683)
.-+..|+.+|..|+-.+.+...|+.++..+ .|++++....++..+|.|+.+|.+||..+.. ....++...+.
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~-~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEA-AARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHH-HHHHHHHhhch
Confidence 467889999999998888888888888633 3444454444788999999999999998744 33344444789
Q ss_pred HHHHHHhHhcCCHHHHHHH
Q 037121 633 MNSLYSLTTDGTSQARKKA 651 (683)
Q Consensus 633 i~~L~~Ll~~g~~~~k~~A 651 (683)
+..|+.++..+...+...+
T Consensus 218 i~~Li~FiE~a~~~~~~~~ 236 (257)
T PF12031_consen 218 ISHLIAFIEDAEQNAHQVA 236 (257)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999998766555443
No 240
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=89.94 E-value=3.9 Score=45.31 Aligned_cols=157 Identities=14% Similarity=0.167 Sum_probs=108.2
Q ss_pred ChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCC---ChhHHHHHHHHHHHhhCChhhHH
Q 037121 504 AIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSN---RTELITDSLAVLANLAEDIQGTS 580 (683)
Q Consensus 504 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~---~~~~~~~al~iL~nLa~~~~~~~ 580 (683)
....+.+++.+++...+..|+..|..++.+......++...++..|..++.++. ..++...++..+.-+-...-..-
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 345677788889988888899999999999999999999999999999994332 24555566666655543221111
Q ss_pred HHHhcCChHHHHHhhccCC-ChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHH-HH
Q 037121 581 TILKTSALPVIIGLLQTLT-SRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIK-IL 658 (683)
Q Consensus 581 ~i~~~g~i~~Lv~lL~~~~-s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~-~l 658 (683)
......+|...+.+..... ...+-..|+.+|-++..+++.. .+.+.+ .--+..|+..++.++.+++..|.+++. ++
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~-~~~v~e-ev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTL-RQLVAE-EVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHH-HHHHHh-cCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 1223334555555553221 3346678999999988876433 344444 456899999999999999999999888 44
Q ss_pred HHhh
Q 037121 659 HKFI 662 (683)
Q Consensus 659 ~~~~ 662 (683)
++..
T Consensus 242 ~~a~ 245 (713)
T KOG2999|consen 242 RKAP 245 (713)
T ss_pred hhCC
Confidence 4443
No 241
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=89.85 E-value=2.9 Score=42.47 Aligned_cols=100 Identities=18% Similarity=0.232 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHccc-CCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHh-hCChhhHHHHHhcCChHHHHHhh
Q 037121 518 CGKKNAVVAIFGLLL-SQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANL-AEDIQGTSTILKTSALPVIIGLL 595 (683)
Q Consensus 518 ~~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nL-a~~~~~~~~i~~~g~i~~Lv~lL 595 (683)
.....|+..|..+|- ++..+..+.+...+..|+.+|.....+.++..++.+|..+ ..++.+...+-+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 345567888888875 6677888999999999999995455688888888888766 57899999999999999999999
Q ss_pred ccCC-ChHHHHHHHHHHHHHhcC
Q 037121 596 QTLT-SRAGKEYCVSILLSLCSN 617 (683)
Q Consensus 596 ~~~~-s~~~ke~A~~~L~~L~~~ 617 (683)
+... +...|-.++..|+-....
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHcc
Confidence 8863 456778888888766554
No 242
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.72 E-value=7.2 Score=44.14 Aligned_cols=129 Identities=19% Similarity=0.170 Sum_probs=79.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCc-hhhHHhh
Q 037121 380 RFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTS-GKKVIVE 458 (683)
Q Consensus 380 ~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~-~r~~i~~ 458 (683)
..++.. ..|+...+.-|+.-|..+.++.|.... -+|..++.|..++|..++..|+..|-.+|.+.. .-.+
T Consensus 26 ~~il~~-~kg~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k--- 96 (556)
T PF05918_consen 26 KEILDG-VKGSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK--- 96 (556)
T ss_dssp HHHHHG-GGS-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH---
T ss_pred HHHHHH-ccCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH---
Confidence 344443 346788899999999998888777543 346889999999999999999999999998743 2333
Q ss_pred cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhh---cCCHHHHHHHHHHHH
Q 037121 459 SGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIE---EGTDCGKKNAVVAIF 528 (683)
Q Consensus 459 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---~~~~~~~~~A~~aL~ 528 (683)
+++.|+.+|..+ +......+-.+|..|-..+ . .+.+..|.+-+. +++..+++.++..|.
T Consensus 97 --vaDvL~QlL~td-d~~E~~~v~~sL~~ll~~d-~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 97 --VADVLVQLLQTD-DPVELDAVKNSLMSLLKQD-P-------KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp --HHHHHHHHTT----HHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcc-cHHHHHHHHHHHHHHHhcC-c-------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 357788888877 5444444555555443322 1 234444555444 566777777776663
No 243
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=89.70 E-value=18 Score=39.34 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcC-C---CCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHH
Q 037121 391 NEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLS-S---PDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVIL 466 (683)
Q Consensus 391 ~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s---~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv 466 (683)
+.+-..|+..+..+....|-.-..+.++|.++.+++.+. . .+.++...--.+|..||-+..+.+.+.+.+.++.++
T Consensus 123 ~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f 202 (379)
T PF06025_consen 123 PSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLF 202 (379)
T ss_pred hHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHH
Confidence 445567788888888888888999999999999999888 4 467777777788899999999999999999999999
Q ss_pred HHHcCC
Q 037121 467 KVLKSG 472 (683)
Q Consensus 467 ~lL~~~ 472 (683)
+++.+.
T Consensus 203 ~if~s~ 208 (379)
T PF06025_consen 203 EIFTSP 208 (379)
T ss_pred HHhCCH
Confidence 999874
No 244
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=89.55 E-value=0.36 Score=43.05 Aligned_cols=51 Identities=14% Similarity=0.222 Sum_probs=42.4
Q ss_pred CCccCCCCcccCCCceec----cCcccccHHHHHHHHHh--CCCCCCCCCcccCCCC
Q 037121 278 EDFRCPISLELMTDPVTV----STGQTYDRSSIQKWLKA--GNMLCPKTGEKLTNTE 328 (683)
Q Consensus 278 ~~f~CpIc~~~m~dPv~~----~cght~~r~cI~~w~~~--~~~~CP~c~~~l~~~~ 328 (683)
.-+.|.||.+.-.|+--+ .||...|-.|.-..|+. -++.||+|+..+....
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 578899999999988765 49999999999888875 3678999998776543
No 245
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=89.36 E-value=0.99 Score=44.93 Aligned_cols=81 Identities=15% Similarity=0.210 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHcccCCchhhhHhhcC-------cHHHHHHHHccCCChhHHHHHHHHHHHhhCChh--hHHHHHhcCCh
Q 037121 518 CGKKNAVVAIFGLLLSQGNHQKVLDAG-------TVPLLADILASSNRTELITDSLAVLANLAEDIQ--GTSTILKTSAL 588 (683)
Q Consensus 518 ~~~~~A~~aL~nLs~~~~n~~~iv~~g-------~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~--~~~~i~~~g~i 588 (683)
.-+..|+.+|+.||..+.|...++..+ .+..|+++|....++-.++.|+.+|.+||..++ .+..-.+.++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 568899999999999999987777665 445566667556788999999999999996444 33444677789
Q ss_pred HHHHHhhccC
Q 037121 589 PVIIGLLQTL 598 (683)
Q Consensus 589 ~~Lv~lL~~~ 598 (683)
..|+.+++..
T Consensus 219 ~~Li~FiE~a 228 (257)
T PF12031_consen 219 SHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 246
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.04 E-value=1.1 Score=51.89 Aligned_cols=43 Identities=16% Similarity=0.289 Sum_probs=36.3
Q ss_pred CCCCccCCCCcccCCCcee-ccCcccccHHHHHHHHHhCCCCCCCCCc
Q 037121 276 NPEDFRCPISLELMTDPVT-VSTGQTYDRSSIQKWLKAGNMLCPKTGE 322 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~dPv~-~~cght~~r~cI~~w~~~~~~~CP~c~~ 322 (683)
+-..-.|..|.-.+.-|++ ..|||.|-+.|.+ .+...||+|..
T Consensus 837 i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 837 IFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 3344699999999999987 5999999999988 46789999965
No 247
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.99 E-value=5.4 Score=46.52 Aligned_cols=219 Identities=16% Similarity=0.094 Sum_probs=131.2
Q ss_pred CCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHH
Q 037121 431 PDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVK 510 (683)
Q Consensus 431 ~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ 510 (683)
+-..++-.|+..|..+....+-+..+...+++...+..|++. +.-+--+|...+..||...+ ...+|-|.+
T Consensus 739 ~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkde-dsyvyLnaI~gv~~Lcevy~--------e~il~dL~e 809 (982)
T KOG4653|consen 739 DQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDE-DSYVYLNAIRGVVSLCEVYP--------EDILPDLSE 809 (982)
T ss_pred CcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhccc-CceeeHHHHHHHHHHHHhcc--------hhhHHHHHH
Confidence 334567778888888887766677777889999999999987 55666777776666665311 345666666
Q ss_pred hhhcC-C---HHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChh--hHHHHHh
Q 037121 511 LIEEG-T---DCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQ--GTSTILK 584 (683)
Q Consensus 511 lL~~~-~---~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~--~~~~i~~ 584 (683)
.-.+. + .+.+-..-.++.++....+....=..+-.+...+..+ .+++...+..++++|++||.--. +-..+.
T Consensus 810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gv-repd~~~RaSS~a~lg~Lcq~~a~~vsd~~~- 887 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGV-REPDHEFRASSLANLGQLCQLLAFQVSDFFH- 887 (982)
T ss_pred HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCchHHHHHhHHHHHHHHHHHHhhhhhHHHH-
Confidence 32221 1 2223334456666655433221111123455566666 56777789999999999995322 112332
Q ss_pred cCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcC-CCcHHHHHHhHhcC-CHHHHHHHHHHHHHHHHh
Q 037121 585 TSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKD-PSLMNSLYSLTTDG-TSQARKKARSLIKILHKF 661 (683)
Q Consensus 585 ~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~-~g~i~~L~~Ll~~g-~~~~k~~A~~lL~~l~~~ 661 (683)
..+..++.+.+.+.+.-.|..|+-++..+-.+.+.+....+..- -.....+..+.... ++.+|-.|+..+.-+...
T Consensus 888 -ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~ 965 (982)
T KOG4653|consen 888 -EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAA 965 (982)
T ss_pred -HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 24555666666554788999999998888777665554433210 11233333333333 555666677766655443
No 248
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=88.90 E-value=14 Score=40.04 Aligned_cols=234 Identities=19% Similarity=0.216 Sum_probs=128.0
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC-C-CHHHHHHHHHHHHhhccCCchh
Q 037121 377 LMSRFLARRLFFG-TNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS-P-DQCVQENAVAALLKLSKHTSGK 453 (683)
Q Consensus 377 ~~i~~Lv~~L~s~-~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~-d~~~q~~A~~aL~nLs~~~~~r 453 (683)
..+..++..|.++ +...|+.++-.|..-+. ++..|..+...|.+..++..+.. + +......++.+++-++.+..+-
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch
Confidence 3677888888744 45678888877777666 67889999999999999999954 3 3344445555666666666555
Q ss_pred hHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhh---------cCCHHHHHHHH
Q 037121 454 KVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIE---------EGTDCGKKNAV 524 (683)
Q Consensus 454 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---------~~~~~~~~~A~ 524 (683)
..+...+.+..++.++.-..........- .....+-.++.. ..+..+.+.+. ......+..|+
T Consensus 100 ~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~~--~~~~~~~~~~~~~~~~~~~~~~~lsp~~lal 171 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQQ--KSRSLCKELLSSGSSWKSPKPPELSPQTLAL 171 (361)
T ss_pred hhhhchhHHHHHHHHhccccccccccchh------hhhhhhhhHHHH--HHHHHHHHHHhccccccccCCcccccccHHH
Confidence 55556667777788887110000000000 000000000000 01111111110 01112333444
Q ss_pred HHHHHcc--------------cC-CchhhhHhhcCcHHHHHHHHcc----CC-----------ChhHHHHHHHHHHHhhC
Q 037121 525 VAIFGLL--------------LS-QGNHQKVLDAGTVPLLADILAS----SN-----------RTELITDSLAVLANLAE 574 (683)
Q Consensus 525 ~aL~nLs--------------~~-~~n~~~iv~~g~v~~Lv~lL~~----~~-----------~~~~~~~al~iL~nLa~ 574 (683)
.+|-.++ .. +-.+..+...|++..++.++.. .. +-.....++.+|.+.+.
T Consensus 172 l~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~ 251 (361)
T PF07814_consen 172 LALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTF 251 (361)
T ss_pred HHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHh
Confidence 4444442 11 1136778888999999999841 10 12356778999998873
Q ss_pred -ChhhHHHHHhcC--ChHHHHH-hhccCC--ChHHHHHHHHHHHHHhcCCh
Q 037121 575 -DIQGTSTILKTS--ALPVIIG-LLQTLT--SRAGKEYCVSILLSLCSNAR 619 (683)
Q Consensus 575 -~~~~~~~i~~~g--~i~~Lv~-lL~~~~--s~~~ke~A~~~L~~L~~~~~ 619 (683)
++++...+.... .++.+.. ++..-. .......++.++.|++.+++
T Consensus 252 ~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~ 302 (361)
T PF07814_consen 252 LSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNP 302 (361)
T ss_pred cCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCc
Confidence 444444443332 2333333 333220 22335678999999998874
No 249
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.53 E-value=0.43 Score=50.05 Aligned_cols=63 Identities=25% Similarity=0.350 Sum_probs=48.4
Q ss_pred ccCCCCcccCC------CceeccCcccccHHHHHHHHHhCCCCCCCCCcccC--C---CCCCCcHHHHHHHHHH
Q 037121 280 FRCPISLELMT------DPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLT--N---TELLPNTTLKKLIHQF 342 (683)
Q Consensus 280 f~CpIc~~~m~------dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~--~---~~l~pn~~l~~~i~~~ 342 (683)
+.|-||.+.+. -|-++.|||++|..|+.+.+..+...||.|+.+.. . ..+..|+.+-..++..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 45777776663 46677899999999999888887788999998742 2 2477888888877765
No 250
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.51 E-value=24 Score=40.61 Aligned_cols=112 Identities=19% Similarity=0.098 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhh
Q 037121 375 MKLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKK 454 (683)
Q Consensus 375 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~ 454 (683)
....+..++....+.+..++...+..|+.++..+. .+.--.-.+....+..-|.+..+.++.+|+.+|..+-.++.+-
T Consensus 83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~-eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de- 160 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENA-EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE- 160 (892)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccc-ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC-
Confidence 34467778888888888899999999999887332 2223333567778888888889999999999999997554431
Q ss_pred HHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchh
Q 037121 455 VIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGY 494 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~ 494 (683)
+..++..+..+++++.+.|+|..| |.+++.+...
T Consensus 161 ---e~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsT 194 (892)
T KOG2025|consen 161 ---ECPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNST 194 (892)
T ss_pred ---cccHHHHHHHHHhcCCcHHHHHHH---HHhhccCccc
Confidence 234577888999998799999854 5666665443
No 251
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=88.45 E-value=3.5 Score=42.46 Aligned_cols=187 Identities=14% Similarity=0.099 Sum_probs=110.2
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcC--cHHHHHHHHcCC---CCHHHHHHHHHHHHHhccCchhHH
Q 037121 422 PPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESG--GLKVILKVLKSG---LSLEARQIAAATLFYLTSVKGYRK 496 (683)
Q Consensus 422 ~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g--~i~~Lv~lL~~~---~~~e~~~~Aa~~L~~Ls~~~~~~~ 496 (683)
..+...+.+...+-+--++..+.-+..++..-..+...+ ....+..++..+ .+...+--++.++.|+-.....+.
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~ 145 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQ 145 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHH
Confidence 344555555444445555666666666666544444322 345555555443 266778889999999999888887
Q ss_pred HhhccCC-ChHHHHHhhhcC----CHHHHHHHHHHHHHcccCCchhh--hHhhcCcHHHHHHHH-ccCCChhHHHHHHHH
Q 037121 497 LIGETPK-AIPALVKLIEEG----TDCGKKNAVVAIFGLLLSQGNHQ--KVLDAGTVPLLADIL-ASSNRTELITDSLAV 568 (683)
Q Consensus 497 ~i~~~~g-~i~~Lv~lL~~~----~~~~~~~A~~aL~nLs~~~~n~~--~iv~~g~v~~Lv~lL-~~~~~~~~~~~al~i 568 (683)
.+....+ .+...+..+... +..++..+++.++|++..-.... .=.....+..+++.+ ....+++....++.+
T Consensus 146 ~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvA 225 (268)
T PF08324_consen 146 LLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVA 225 (268)
T ss_dssp HHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 7776444 444444444443 57788899999999986432211 111112455566633 223689999999999
Q ss_pred HHHhhCChhhHHHHHhcCChHHH-HHhhccCCChHHHHHHH
Q 037121 569 LANLAEDIQGTSTILKTSALPVI-IGLLQTLTSRAGKEYCV 608 (683)
Q Consensus 569 L~nLa~~~~~~~~i~~~g~i~~L-v~lL~~~~s~~~ke~A~ 608 (683)
|++|...+.......+.=++... ...-..+..++.++.+.
T Consensus 226 lGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 226 LGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp HHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhc
Confidence 99999766666655554333333 33333333556666543
No 252
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=88.44 E-value=15 Score=41.07 Aligned_cols=107 Identities=20% Similarity=0.020 Sum_probs=67.4
Q ss_pred HHHHHHHHhcCCC----HHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchh
Q 037121 378 MSRFLARRLFFGT----NEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGK 453 (683)
Q Consensus 378 ~i~~Lv~~L~s~~----~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r 453 (683)
....|++.+.+.. .-.....++.+..+.+.+++.+..+. |.|-..|++.-.-++..++.++..++...- .
T Consensus 224 a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~r-----pfL~~wls~k~emV~lE~Ar~v~~~~~~nv-~ 297 (898)
T COG5240 224 AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLR-----PFLNSWLSDKFEMVFLEAARAVCALSEENV-G 297 (898)
T ss_pred HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHH-----HHHHHHhcCcchhhhHHHHHHHHHHHHhcc-C
Confidence 3445555554432 11222344555666677776666554 677777777777888888888888875431 1
Q ss_pred hHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc
Q 037121 454 KVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVK 492 (683)
Q Consensus 454 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~ 492 (683)
...+. .++..|-.+|++. ....|-.|+.+|..|+...
T Consensus 298 ~~~~~-~~vs~L~~fL~s~-rv~~rFsA~Riln~lam~~ 334 (898)
T COG5240 298 SQFVD-QTVSSLRTFLKST-RVVLRFSAMRILNQLAMKY 334 (898)
T ss_pred HHHHH-HHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhhC
Confidence 22221 2455566666776 7778899999999998754
No 253
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=87.69 E-value=35 Score=40.39 Aligned_cols=161 Identities=17% Similarity=0.107 Sum_probs=109.5
Q ss_pred hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhh--cCCHHHHHHHHHHHHHcccCCc
Q 037121 458 ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIE--EGTDCGKKNAVVAIFGLLLSQG 535 (683)
Q Consensus 458 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~~A~~aL~nLs~~~~ 535 (683)
..++++.|..+.... +.++....+.+|...+..+........ .-..|.++.+.. ++++.+...+-..+..|+....
T Consensus 528 ~p~ild~L~qlas~~-s~evl~llmE~Ls~vv~~dpef~as~~-skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~ 605 (1005)
T KOG2274|consen 528 QPMILDGLLQLASKS-SDEVLVLLMEALSSVVKLDPEFAASME-SKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA 605 (1005)
T ss_pred chHHHHHHHHHcccc-cHHHHHHHHHHHHHHhccChhhhhhhh-cchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 567788888887776 788888889999988887655544444 567777777553 4567676667777777766444
Q ss_pred hhhhHhhcCcHHHHHHHHccCCC----hhHHHHHHHHHHHhhC-C-hhhHHHHHhcCChHHHHH-hhccCCChHHHHHHH
Q 037121 536 NHQKVLDAGTVPLLADILASSNR----TELITDSLAVLANLAE-D-IQGTSTILKTSALPVIIG-LLQTLTSRAGKEYCV 608 (683)
Q Consensus 536 n~~~iv~~g~v~~Lv~lL~~~~~----~~~~~~al~iL~nLa~-~-~~~~~~i~~~g~i~~Lv~-lL~~~~s~~~ke~A~ 608 (683)
+..-+.+ -.+|.|+..|. .+. ..+..-++.+|..+.. . +.--..+. .-+.|++.+ .+.++ +...-.++.
T Consensus 606 ~~g~m~e-~~iPslisil~-~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsd-D~~tlQ~~~ 681 (1005)
T KOG2274|consen 606 NYGPMQE-RLIPSLISVLQ-LNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSD-DHETLQNAT 681 (1005)
T ss_pred hhcchHH-HHHHHHHHHHc-CcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecC-ChHHHHhHH
Confidence 4444333 48999999994 333 6677778888886653 2 22222222 256788888 45555 778888999
Q ss_pred HHHHHHhcCChHHHHH
Q 037121 609 SILLSLCSNAREEVTA 624 (683)
Q Consensus 609 ~~L~~L~~~~~~~~~~ 624 (683)
.+|..+...+.++...
T Consensus 682 EcLra~Is~~~eq~~t 697 (1005)
T KOG2274|consen 682 ECLRALISVTLEQLLT 697 (1005)
T ss_pred HHHHHHHhcCHHHHHh
Confidence 9998888877555444
No 254
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=87.49 E-value=1.4 Score=43.30 Aligned_cols=96 Identities=14% Similarity=0.128 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCC----ChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHH
Q 037121 561 LITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLT----SRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSL 636 (683)
Q Consensus 561 ~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~----s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L 636 (683)
=...|+.+|..++++|+.+..++++..--.+..+|...+ .+..+-.+++++..|..+++..+.+.+.. ..++|.+
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLlt-TeivPLc 194 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLT-TEIVPLC 194 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHh-hhHHHHH
Confidence 346789999999999999999998775334455554431 23467789999999999998888888876 8899999
Q ss_pred HHhHhcCCHHHHHHHHHHHHH
Q 037121 637 YSLTTDGTSQARKKARSLIKI 657 (683)
Q Consensus 637 ~~Ll~~g~~~~k~~A~~lL~~ 657 (683)
+.+...|+..-|.-|..+...
T Consensus 195 LrIme~gSElSktvaifI~qk 215 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQK 215 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHH
Confidence 999999988877777776653
No 255
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=87.19 E-value=74 Score=38.04 Aligned_cols=210 Identities=19% Similarity=0.139 Sum_probs=115.3
Q ss_pred HHHHHHHhcC-----CCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcC----CCC----HHHHHHHHHHHHh
Q 037121 379 SRFLARRLFF-----GTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLS----SPD----QCVQENAVAALLK 445 (683)
Q Consensus 379 i~~Lv~~L~s-----~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~----s~d----~~~q~~A~~aL~n 445 (683)
+..++..|.+ +..+.-...++.|+..++ -..||..+.+.|+++.|+..|. .+. ..+-+.-+.++.-
T Consensus 119 L~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ 197 (802)
T PF13764_consen 119 LEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIES 197 (802)
T ss_pred HHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHH
Confidence 4455555543 233344455666666776 4899999999999999998774 333 5666666666655
Q ss_pred hccCCch---h--hHHhhcC--------cHHHHHHHHcCC---CCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHH
Q 037121 446 LSKHTSG---K--KVIVESG--------GLKVILKVLKSG---LSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALV 509 (683)
Q Consensus 446 Ls~~~~~---r--~~i~~~g--------~i~~Lv~lL~~~---~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv 509 (683)
|..+... . ....... -+..+++.+.+. .+..+....+.+|-+|+.++..+..... ..+...+
T Consensus 198 ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv--~~F~p~l 275 (802)
T PF13764_consen 198 LLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV--EHFKPYL 275 (802)
T ss_pred HHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH--HHHHHhc
Confidence 5322211 1 0111111 255666666553 2577888999999999987765544432 1222222
Q ss_pred HhhhcC-----CHHHHH-HHHHHHHHcccCCc---hhhhHhhcCcHHHHHHHHccC-C------Ch--------hHHHHH
Q 037121 510 KLIEEG-----TDCGKK-NAVVAIFGLLLSQG---NHQKVLDAGTVPLLADILASS-N------RT--------ELITDS 565 (683)
Q Consensus 510 ~lL~~~-----~~~~~~-~A~~aL~nLs~~~~---n~~~iv~~g~v~~Lv~lL~~~-~------~~--------~~~~~a 565 (683)
++=.-+ +....- .-+.+..++-.+.. -+..+++.|++...++.|..+ + ++ .....+
T Consensus 276 ~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~i 355 (802)
T PF13764_consen 276 DFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYI 355 (802)
T ss_pred ChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHH
Confidence 321111 111221 22222223322221 278899999999998888422 1 12 223446
Q ss_pred HHHHHHhhCChhhHHHHHhcCChHHH
Q 037121 566 LAVLANLAEDIQGTSTILKTSALPVI 591 (683)
Q Consensus 566 l~iL~nLa~~~~~~~~i~~~g~i~~L 591 (683)
+.+|.-||......+.+...++++.+
T Consensus 356 L~lL~GLa~gh~~tQ~~~~~~~l~~l 381 (802)
T PF13764_consen 356 LRLLRGLARGHEPTQLLIAEQLLPLL 381 (802)
T ss_pred HHHHHHHHhcCHHHHHHHHhhHHHHH
Confidence 67777777655545555555556433
No 256
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=87.11 E-value=22 Score=36.08 Aligned_cols=192 Identities=16% Similarity=0.175 Sum_probs=115.0
Q ss_pred HHHHHHHHhcC--CCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCc----
Q 037121 378 MSRFLARRLFF--GTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTS---- 451 (683)
Q Consensus 378 ~i~~Lv~~L~s--~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~---- 451 (683)
.++.|+..|.. ..+-++.+|+..|..+.. .+..+.|-++.+.+...+.+....++..+-..+.
T Consensus 68 Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~ 136 (289)
T KOG0567|consen 68 AVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI 136 (289)
T ss_pred hhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccc
Confidence 45666666643 456678888888877652 2345556666655666666655555555521110
Q ss_pred -hhhHH--------hhcCcHHHHHHHHcCCCCHH--HHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHH
Q 037121 452 -GKKVI--------VESGGLKVILKVLKSGLSLE--ARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGK 520 (683)
Q Consensus 452 -~r~~i--------~~~g~i~~Lv~lL~~~~~~e--~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 520 (683)
+.... ...+-+..+-..|... +.. -|..|+..|.|+ +. ..+|..|++-+..++.-.+
T Consensus 137 ~~~~p~~SvdPa~p~~~ssv~~lr~~lld~-t~~l~~Ry~amF~LRn~----------g~-EeaI~al~~~l~~~Salfr 204 (289)
T KOG0567|consen 137 ANSSPYISVDPAPPANLSSVHELRAELLDE-TKPLFERYRAMFYLRNI----------GT-EEAINALIDGLADDSALFR 204 (289)
T ss_pred cccCccccCCCCCccccccHHHHHHHHHhc-chhHHHHHhhhhHhhcc----------Cc-HHHHHHHHHhcccchHHHH
Confidence 00000 1112233333333332 222 233333333333 22 4467778887777777788
Q ss_pred HHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccC-CChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCC
Q 037121 521 KNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASS-NRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLT 599 (683)
Q Consensus 521 ~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~-~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~ 599 (683)
..++..+..|-+ .-+|+.|.+.|... .++.++..|+.+|+.++.. .++..|.+++...
T Consensus 205 hEvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~~D~- 263 (289)
T KOG0567|consen 205 HEVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE----------DCVEVLKEYLGDE- 263 (289)
T ss_pred HHHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH----------HHHHHHHHHcCCc-
Confidence 888888877643 34788888888433 4678888999999876653 3566777888876
Q ss_pred ChHHHHHHHHHHHH
Q 037121 600 SRAGKEYCVSILLS 613 (683)
Q Consensus 600 s~~~ke~A~~~L~~ 613 (683)
.+.+++.|..+|-.
T Consensus 264 ~~vv~esc~valdm 277 (289)
T KOG0567|consen 264 ERVVRESCEVALDM 277 (289)
T ss_pred HHHHHHHHHHHHHH
Confidence 77888888887643
No 257
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=87.11 E-value=55 Score=39.58 Aligned_cols=261 Identities=16% Similarity=0.129 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC-CCHHHHHHHHHHHHhhccCCc
Q 037121 373 EAMKLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS-PDQCVQENAVAALLKLSKHTS 451 (683)
Q Consensus 373 ~~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~q~~A~~aL~nLs~~~~ 451 (683)
+..+..+..|++.|++.+..+++.|++.+..++...+. .+++ -+|...+.++.- ++...=..|+.+|..|+.-.-
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~---~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl 412 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP---ELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGL 412 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH---HHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC
Confidence 45677899999999999999999999999999988772 2332 245555565544 345566688888888874321
Q ss_pred hhhHHhhcCcHHHHHHHHcC----C---CCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHH-----hhhcCCHHH
Q 037121 452 GKKVIVESGGLKVILKVLKS----G---LSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVK-----LIEEGTDCG 519 (683)
Q Consensus 452 ~r~~i~~~g~i~~Lv~lL~~----~---~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~-----lL~~~~~~~ 519 (683)
-.-.. -..+++.++.-|.- | ....+|..|+.+.+.++...+.... .+++..|.. .+-+..-..
T Consensus 413 Llps~-l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l----~p~l~~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 413 LLPSL-LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDL----KPVLQSLASALLIVALFDREVNC 487 (1133)
T ss_pred cchHH-HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhh----hHHHHHHHHHHHHHHhcCchhhH
Confidence 11000 12345555544431 1 1346789999999999875432211 122332222 223345677
Q ss_pred HHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHH-HhhCChhhHHHHHhcCChHHHHHh-hcc
Q 037121 520 KKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLA-NLAEDIQGTSTILKTSALPVIIGL-LQT 597 (683)
Q Consensus 520 ~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~-nLa~~~~~~~~i~~~g~i~~Lv~l-L~~ 597 (683)
+..|..|+.......+|... +++ |+... +.-....+..|-..|. .++..+..+.-+.+ .|+.. +.+
T Consensus 488 RRAAsAAlqE~VGR~~n~p~-----Gi~-Lis~~-dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~H 555 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGNFPH-----GIS-LISTI-DYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCH 555 (1133)
T ss_pred hHHHHHHHHHHhccCCCCCC-----chh-hhhhc-chhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhccccc
Confidence 88888888877666555422 111 11111 0001111122222221 11223333332222 22221 344
Q ss_pred CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHH----HHHHHHHHHHHh
Q 037121 598 LTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARK----KARSLIKILHKF 661 (683)
Q Consensus 598 ~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~----~A~~lL~~l~~~ 661 (683)
- +...+|.|+.+|..|....++. +. .+.+++|+.-..+++...+. .+.+++..++..
T Consensus 556 W-d~~irelaa~aL~~Ls~~~pk~----~a--~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l 616 (1133)
T KOG1943|consen 556 W-DVKIRELAAYALHKLSLTEPKY----LA--DYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKL 616 (1133)
T ss_pred c-cHHHHHHHHHHHHHHHHhhHHh----hc--ccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhh
Confidence 4 7889999999999988764332 32 46788888888777776653 244455555444
No 258
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=87.10 E-value=0.51 Score=46.09 Aligned_cols=57 Identities=23% Similarity=0.358 Sum_probs=44.6
Q ss_pred CccCCCCcccCCCcee-ccCcccccHHHHHHHHHh-CCCCCCC--CCcccCCCCCCCcHHH
Q 037121 279 DFRCPISLELMTDPVT-VSTGQTYDRSSIQKWLKA-GNMLCPK--TGEKLTNTELLPNTTL 335 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv~-~~cght~~r~cI~~w~~~-~~~~CP~--c~~~l~~~~l~pn~~l 335 (683)
+.+|||+.....-|++ ..|+|.|++..|.+.+.. ....||. |.+...-+.+.-+..|
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~Il 249 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHIL 249 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHH
Confidence 6799999999999987 479999999999999873 2457886 7776666666555443
No 259
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=86.74 E-value=30 Score=40.95 Aligned_cols=218 Identities=17% Similarity=0.096 Sum_probs=131.7
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch-hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHh
Q 037121 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLI 498 (683)
Q Consensus 420 ~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~-r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i 498 (683)
..|.++..+++.++.++.+....+.++-...+. .........++.++.+-... ...++......+.-++.... ..+
T Consensus 438 llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~--~~~ 514 (759)
T KOG0211|consen 438 LLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG--VEF 514 (759)
T ss_pred cChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh--hHH
Confidence 456777788888999999988777555433333 45555666677777776665 67777777777777766443 112
Q ss_pred hccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccC--CChhHHHHHHHHHHHhhCCh
Q 037121 499 GETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASS--NRTELITDSLAVLANLAEDI 576 (683)
Q Consensus 499 ~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~--~~~~~~~~al~iL~nLa~~~ 576 (683)
.. ...-+.+...+.+....+++.|+..|..++..-+ . .-...-.++.++....+. -.....-.++..|..+.+.+
T Consensus 515 ~~-~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~-~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e 591 (759)
T KOG0211|consen 515 FD-EKLAELLRTWLPDHVYSIREAAARNLPALVETFG-S-EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE 591 (759)
T ss_pred hh-HHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-c-chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH
Confidence 21 2233344444555556788888888888877655 2 222223566666665221 12233344555666555554
Q ss_pred hhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHH
Q 037121 577 QGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSL 654 (683)
Q Consensus 577 ~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~l 654 (683)
-... ..++.+.++.... .+.+|-+++..|-.+...-...... .-+.|.+..+..+.+..+|-.|..+
T Consensus 592 i~~~-----~Llp~~~~l~~D~-vanVR~nvak~L~~i~~~L~~~~~~-----~~v~pll~~L~~d~~~dvr~~a~~a 658 (759)
T KOG0211|consen 592 ITCE-----DLLPVFLDLVKDP-VANVRINVAKHLPKILKLLDESVRD-----EEVLPLLETLSSDQELDVRYRAILA 658 (759)
T ss_pred HHHH-----HHhHHHHHhccCC-chhhhhhHHHHHHHHHhhcchHHHH-----HHHHHHHHHhccCcccchhHHHHHH
Confidence 3333 4457777777776 7889999999887776653332222 2346677777666655555444433
No 260
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=86.71 E-value=21 Score=38.03 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=113.7
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHhhcc-CCch-hhHHh-hcC-cHHHHHHHHcCC---C-C--------HHHHHHHHHH
Q 037121 421 IPPLLNLLSSPDQCVQENAVAALLKLSK-HTSG-KKVIV-ESG-GLKVILKVLKSG---L-S--------LEARQIAAAT 484 (683)
Q Consensus 421 i~~Lv~lL~s~d~~~q~~A~~aL~nLs~-~~~~-r~~i~-~~g-~i~~Lv~lL~~~---~-~--------~e~~~~Aa~~ 484 (683)
+..+-+.|++....++..++..|..+.. ++.. ...+. .-+ -.+.+.+++... . . ..+|.+....
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6778888999888889999999999988 5433 44444 222 345566666321 0 1 1778888887
Q ss_pred HHHhcc--CchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHH-cccCCc----hhhhHhhcCcHHHHHHHHccCC
Q 037121 485 LFYLTS--VKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFG-LLLSQG----NHQKVLDAGTVPLLADILASSN 557 (683)
Q Consensus 485 L~~Ls~--~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n-Ls~~~~----n~~~iv~~g~v~~Lv~lL~~~~ 557 (683)
+..+.. +...+..+....+.+..+.+-|..++..+....+.+|.. +..++. .+..+....++..|+.+. ...
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly-~~~ 216 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLY-SRD 216 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHh-ccc
Confidence 777755 345677777768889999999999899999999999984 544442 356677777889999977 555
Q ss_pred Ch----hHHHHHHHHHHHhhCChh
Q 037121 558 RT----ELITDSLAVLANLAEDIQ 577 (683)
Q Consensus 558 ~~----~~~~~al~iL~nLa~~~~ 577 (683)
++ .+.+.+-..|..+|.++.
T Consensus 217 ~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 217 GEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred CCcccchHHHHHHHHHHHHhcCCC
Confidence 55 888999999999996554
No 261
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=86.62 E-value=3.6 Score=33.25 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhc
Q 037121 562 ITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAK 628 (683)
Q Consensus 562 ~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~ 628 (683)
...|+.+++++++++.|...+.+.+.++.++++.+..+....|--|..+|..+++. .+-.+.+.+
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T--~~G~~~L~~ 68 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST--EEGAEILDE 68 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC--HHHHHHHHH
Confidence 46799999999999999999988889999999888765677999999999888776 455555554
No 262
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=86.54 E-value=19 Score=42.46 Aligned_cols=198 Identities=16% Similarity=0.074 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC-CCHHHHHHHHHHHHhhccCCchhhHHhhcCcHH--HHHHHHc
Q 037121 394 KNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS-PDQCVQENAVAALLKLSKHTSGKKVIVESGGLK--VILKVLK 470 (683)
Q Consensus 394 ~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~--~Lv~lL~ 470 (683)
+..+. .|.+....++++...+.+.|++..+...+.. .+.+++..+++.|.|++...+.+........+. .+-.++.
T Consensus 489 ~~~~~-~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~ 567 (699)
T KOG3665|consen 489 VLEFT-ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLN 567 (699)
T ss_pred HHHHH-HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHh
Confidence 34433 7788899999999999999999999999986 678899999999999998876655444222222 2223333
Q ss_pred CCCCH-HHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHH-
Q 037121 471 SGLSL-EARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPL- 548 (683)
Q Consensus 471 ~~~~~-e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~- 548 (683)
.- +. +.-.+|+.+|..+..+.+. ... .+.-+..-.+ -..+... ......++.-...+.+
T Consensus 568 ~w-~~~ersY~~~siLa~ll~~~~~---~~~-~~~r~~~~~~-----------l~e~i~~---~~~~~~~~~~~~~f~~~ 628 (699)
T KOG3665|consen 568 KW-DSIERSYNAASILALLLSDSEK---TTE-CVFRNSVNEL-----------LVEAISR---WLTSEIRVINDRSFFPR 628 (699)
T ss_pred hc-chhhHHHHHHHHHHHHHhCCCc---Ccc-ccchHHHHHH-----------HHHHhhc---cCccceeehhhhhcchh
Confidence 33 44 6778888888888766443 111 1111111111 1111222 2222222333333334
Q ss_pred HHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHH
Q 037121 549 LADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSIL 611 (683)
Q Consensus 549 Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L 611 (683)
+..++..+..++.+--|+..+.++.. .++....+.+.|+++.+.++-........++.+..++
T Consensus 629 ~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 629 ILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred HHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 66666555678888899999999985 6777888888888888877443321344555555554
No 263
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=86.39 E-value=30 Score=36.81 Aligned_cols=157 Identities=13% Similarity=0.088 Sum_probs=110.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHh-cCchhhHHHHhc-C-ChHHHHhhcCC-----CC--------HHHHHHHHH
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAK-SNIFNRSCIVES-G-AIPPLLNLLSS-----PD--------QCVQENAVA 441 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~-~~~~~r~~i~~~-G-~i~~Lv~lL~s-----~d--------~~~q~~A~~ 441 (683)
..+.+...|.++....+..+++.|..++. .+......+... + -.+.|..++.. .+ +.++.+.+.
T Consensus 57 ~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 57 HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 35677778888887888888988888887 554554444443 3 34456666632 11 278888888
Q ss_pred HHHhhccCCch--hhHHh-hcCcHHHHHHHHcCCCCHHHHHHHHHHHHH-hccCc----hhHHHhhccCCChHHHHHhhh
Q 037121 442 ALLKLSKHTSG--KKVIV-ESGGLKVILKVLKSGLSLEARQIAAATLFY-LTSVK----GYRKLIGETPKAIPALVKLIE 513 (683)
Q Consensus 442 aL~nLs~~~~~--r~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~-Ls~~~----~~~~~i~~~~g~i~~Lv~lL~ 513 (683)
.++.+....+. +..++ +.+.+..+.+-|..+ +.++......+|.. +..+. ..|..+.. ..++..|+.+..
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D-~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn-~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD-PPETVILILETLKDKVLKDSSVSRSTKCKLFN-EWTLSQLASLYS 214 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC-CHHHHHHHHHHHHHHhccCCCCChhhhhhhcC-HHHHHHHHHHhc
Confidence 88777655443 66666 667788888888887 88888888888874 44333 34556666 668888999777
Q ss_pred cCCH----HHHHHHHHHHHHcccCCch
Q 037121 514 EGTD----CGKKNAVVAIFGLLLSQGN 536 (683)
Q Consensus 514 ~~~~----~~~~~A~~aL~nLs~~~~n 536 (683)
..++ .+...+-..|..+|.++++
T Consensus 215 ~~~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 215 RDGEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred ccCCcccchHHHHHHHHHHHHhcCCCc
Confidence 6666 7788888888898887654
No 264
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=86.34 E-value=0.27 Score=55.97 Aligned_cols=66 Identities=17% Similarity=0.376 Sum_probs=49.3
Q ss_pred CCCccCCCCcccCCCceeccCcccccHHHHHHHHHh--CCCCCCCCCcccCCCCCCCcHHHHHHHHHH
Q 037121 277 PEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKA--GNMLCPKTGEKLTNTELLPNTTLKKLIHQF 342 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~--~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~ 342 (683)
..+..||||.....+|+.+.|.|.||+.|+..-|.. +...||.|+.........-...-..+++++
T Consensus 19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKES 86 (684)
T ss_pred hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHh
Confidence 346789999999999999999999999999988875 456899998766554443333334444443
No 265
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=86.10 E-value=17 Score=40.15 Aligned_cols=187 Identities=15% Similarity=0.097 Sum_probs=111.2
Q ss_pred cHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhh-hcC----CHHHHHHHHHHHHHcccCCc
Q 037121 461 GLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLI-EEG----TDCGKKNAVVAIFGLLLSQG 535 (683)
Q Consensus 461 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL-~~~----~~~~~~~A~~aL~nLs~~~~ 535 (683)
.+..++.+..+..+...+..++..+..|..--.....+ ...+..+...+ ... .....+-.+|....|....+
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l---~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDL---DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhH---HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 56667776666545666777777777665421111111 12333333333 111 23445555566666655332
Q ss_pred hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCC-hhh--------HHHHHhc----CChHHHHHhhccCCChH
Q 037121 536 NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAED-IQG--------TSTILKT----SALPVIIGLLQTLTSRA 602 (683)
Q Consensus 536 n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~-~~~--------~~~i~~~----g~i~~Lv~lL~~~~s~~ 602 (683)
.. ....+..|+++| .++.+-..+...+..|... ++. ..-+.+. ..+|.|++-.+.. +..
T Consensus 267 ~~----~~~~~~~L~~lL---~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~ 338 (415)
T PF12460_consen 267 PL----ATELLDKLLELL---SSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDE 338 (415)
T ss_pred ch----HHHHHHHHHHHh---CChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-Chh
Confidence 21 113567788888 3366667777777777654 322 1222222 2366677766655 555
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHH
Q 037121 603 GKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHK 660 (683)
Q Consensus 603 ~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 660 (683)
.|.+.+.+|.++..+-+..+...=. ..++|.|++-+...++.++..+...|..+-.
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl~~~l--~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVLLPEL--PTLLPLLLQSLSLPDADVLLSSLETLKMILE 394 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 8999999999999988766544322 4579999999988899999888887775543
No 266
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.69 E-value=0.44 Score=52.99 Aligned_cols=39 Identities=31% Similarity=0.518 Sum_probs=32.5
Q ss_pred CCCccCCCCcccC----CCceeccCcccccHHHHHHHHHhCCCCCC
Q 037121 277 PEDFRCPISLELM----TDPVTVSTGQTYDRSSIQKWLKAGNMLCP 318 (683)
Q Consensus 277 ~~~f~CpIc~~~m----~dPv~~~cght~~r~cI~~w~~~~~~~CP 318 (683)
.+-++|+||...+ ..||.+-||||.|+.|.+.-... +||
T Consensus 9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp 51 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP 51 (861)
T ss_pred HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC
Confidence 4467899997776 57999999999999999987754 777
No 267
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=85.36 E-value=61 Score=36.58 Aligned_cols=278 Identities=13% Similarity=0.065 Sum_probs=143.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIV 457 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~ 457 (683)
...++=+.+.+.+|..+..|+-++........+....-.-..++|.+..+..+...-+...++++++.++.+- ...|-
T Consensus 367 Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v--a~~i~ 444 (858)
T COG5215 367 VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV--AMIIS 444 (858)
T ss_pred HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH--HHhcC
Confidence 3455556778889998889998999888754443333333567899999888888889999999999998441 12222
Q ss_pred hcCcHHHHHHHHcCC--CCHHHHHHHHHHHHHhccCchhHHHhhc--cCCChHHHHHhhhc------CCHHHHHHHHHHH
Q 037121 458 ESGGLKVILKVLKSG--LSLEARQIAAATLFYLTSVKGYRKLIGE--TPKAIPALVKLIEE------GTDCGKKNAVVAI 527 (683)
Q Consensus 458 ~~g~i~~Lv~lL~~~--~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~--~~g~i~~Lv~lL~~------~~~~~~~~A~~aL 527 (683)
-.|-+++.++-..-| ..+....++.|+..||...-.....-.. -....+.++.-|-. .+...+..+..+|
T Consensus 445 p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaL 524 (858)
T COG5215 445 PCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSAL 524 (858)
T ss_pred ccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 456566655543332 1456678899999999753211110000 01223333332221 2234455555566
Q ss_pred HHcccCCchhhhHhhcCcHHHHHHHHc----------cCC----ChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHH
Q 037121 528 FGLLLSQGNHQKVLDAGTVPLLADILA----------SSN----RTELITDSLAVLANLAE-DIQGTSTILKTSALPVII 592 (683)
Q Consensus 528 ~nLs~~~~n~~~iv~~g~v~~Lv~lL~----------~~~----~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv 592 (683)
..|......-..=.-+|+......-|. ... ..+++..-+++|..+-. .+...+. .+.-.+..++
T Consensus 525 gtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~-v~D~lm~Lf~ 603 (858)
T COG5215 525 GTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIED-VEDQLMELFI 603 (858)
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-HHHHHHHHHH
Confidence 555443222111111122222222110 111 23455555555554432 1100000 0111234566
Q ss_pred HhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHh
Q 037121 593 GLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 593 ~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 661 (683)
++|++..+...-+....++.+|...-++. .+.-. ..++|-|..-+.-.+..+-..|..++.-|.+.
T Consensus 604 r~les~~~t~~~~dV~~aIsal~~sl~e~-Fe~y~--~~fiPyl~~aln~~d~~v~~~avglvgdlant 669 (858)
T COG5215 604 RILESTKPTTAFGDVYTAISALSTSLEER-FEQYA--SKFIPYLTRALNCTDRFVLNSAVGLVGDLANT 669 (858)
T ss_pred HHHhccCCchhhhHHHHHHHHHHHHHHHH-HHHHH--hhhhHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 67776533344455555556666543222 23333 35678777777433334445566666555544
No 268
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.06 E-value=9.9 Score=43.82 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhh
Q 037121 604 KEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFI 662 (683)
Q Consensus 604 ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 662 (683)
|..-+.++...+..-+ + +. +.+++.|++.+.+.++.+ |...|.++++..
T Consensus 376 RqlLiktih~cav~Fp-~----~a--atvV~~ll~fisD~N~~a---as~vl~FvrE~i 424 (948)
T KOG1058|consen 376 RQLLIKTIHACAVKFP-E----VA--ATVVSLLLDFISDSNEAA---ASDVLMFVREAI 424 (948)
T ss_pred HHHHHHHHHHHhhcCh-H----HH--HHHHHHHHHHhccCCHHH---HHHHHHHHHHHH
Confidence 5556666655555432 2 22 235889999998887754 445555555543
No 269
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=84.94 E-value=26 Score=42.79 Aligned_cols=231 Identities=13% Similarity=0.109 Sum_probs=131.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHh---cCchhhHHHHhcCChHHHHhhcCCCC-HHHHHHHHHHHHhhc-----
Q 037121 377 LMSRFLARRLFFGTNEEKNKAAYEIRLLAK---SNIFNRSCIVESGAIPPLLNLLSSPD-QCVQENAVAALLKLS----- 447 (683)
Q Consensus 377 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~---~~~~~r~~i~~~G~i~~Lv~lL~s~d-~~~q~~A~~aL~nLs----- 447 (683)
-.++.++..+..+..++|..|+..|..+.. +-+..-+.+.-.=..|.|-.|+.+.+ ..++..-+..|..|+
T Consensus 462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r 541 (1431)
T KOG1240|consen 462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR 541 (1431)
T ss_pred hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence 356888999999999999999888776542 22222223333335677777776633 222322222222221
Q ss_pred -------------cCCchhhHH-----------hhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCC
Q 037121 448 -------------KHTSGKKVI-----------VESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPK 503 (683)
Q Consensus 448 -------------~~~~~r~~i-----------~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g 503 (683)
.++.|-+.. ...++=..++.+|... ..-+|+.-+..|.-||.. -.+...+.-
T Consensus 542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~F---FGk~ksND~ 617 (1431)
T KOG1240|consen 542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDS-PPIVKRALLESIIPLCVF---FGKEKSNDV 617 (1431)
T ss_pred HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHH---hhhcccccc
Confidence 111111000 0112222333344444 445565555555555532 112222345
Q ss_pred ChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHH-HH
Q 037121 504 AIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTS-TI 582 (683)
Q Consensus 504 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~-~i 582 (683)
.++.|+..|++.+...+-.-...+..+|..-+ .+-++.+.+|.|.+-| .+..+-+...|+++|..|+...-.+. .+
T Consensus 618 iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG--~rs~seyllPLl~Q~l-tD~EE~Viv~aL~~ls~Lik~~ll~K~~v 694 (1431)
T KOG1240|consen 618 ILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG--WRSVSEYLLPLLQQGL-TDGEEAVIVSALGSLSILIKLGLLRKPAV 694 (1431)
T ss_pred hHHHHHHHhcCccHHHHHHHHhhccceEEEEe--eeeHHHHHHHHHHHhc-cCcchhhHHHHHHHHHHHHHhcccchHHH
Confidence 77888899888876666554455555544322 2335677888888888 78889999999999999986533222 11
Q ss_pred HhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcC
Q 037121 583 LKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSN 617 (683)
Q Consensus 583 ~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~ 617 (683)
. ..+....-+|-+. +..+|..++.++......
T Consensus 695 ~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 695 K--DILQDVLPLLCHP-NLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred H--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHhh
Confidence 1 1222333355565 788999999998876654
No 270
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=84.84 E-value=0.28 Score=58.98 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=42.2
Q ss_pred CCCCCccCCCCcccCC-CceeccCcccccHHHHHHHHHhCCCCCCCCCcc
Q 037121 275 LNPEDFRCPISLELMT-DPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEK 323 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~-dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~ 323 (683)
++-..+.|+||+++|+ .-.+..|||.||..|+..|... +..||+|...
T Consensus 1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKSI 1197 (1394)
T ss_pred HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhhh
Confidence 5667889999999998 6667899999999999999998 8899999743
No 271
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=84.55 E-value=12 Score=43.14 Aligned_cols=134 Identities=22% Similarity=0.214 Sum_probs=88.2
Q ss_pred cCChHHHHhh-cCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHH
Q 037121 418 SGAIPPLLNL-LSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRK 496 (683)
Q Consensus 418 ~G~i~~Lv~l-L~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~ 496 (683)
.++|..|++. .++.|.+++..|+.+|+-++..+. ..++.+|++|...+++-+|--||-+|.--|.+..++.
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp--------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e 624 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP--------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE 624 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEecCh--------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH
Confidence 4667777776 566888999999999987665432 3467778889888899999999999988888776665
Q ss_pred HhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCC--chhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHH
Q 037121 497 LIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ--GNHQKVLDAGTVPLLADILASSNRTELITDSLAVL 569 (683)
Q Consensus 497 ~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~--~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL 569 (683)
.| ..|=.+..+...-+++.|+.++.-+.... ..+.++- |+...+.+++ .+.+.+...+-=++|
T Consensus 625 Ai-------~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~--~frk~l~kvI-~dKhEd~~aK~GAil 689 (929)
T KOG2062|consen 625 AI-------NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVN--GFRKQLEKVI-NDKHEDGMAKFGAIL 689 (929)
T ss_pred HH-------HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHH--HHHHHHHHHh-hhhhhHHHHHHHHHH
Confidence 54 33333444445567778888877654422 2333332 4566677777 544444433333333
No 272
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=84.53 E-value=38 Score=36.89 Aligned_cols=95 Identities=15% Similarity=0.091 Sum_probs=75.0
Q ss_pred cCcHHHHHHHHcCCC--CHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhh-cC---CHHHHHHHHHHHHHccc
Q 037121 459 SGGLKVILKVLKSGL--SLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIE-EG---TDCGKKNAVVAIFGLLL 532 (683)
Q Consensus 459 ~g~i~~Lv~lL~~~~--~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-~~---~~~~~~~A~~aL~nLs~ 532 (683)
...+..|-.++++.. -..+-..|+.++..+..++...-.+....|.++.+++.+. .+ +.++....-.+|..||.
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 344555666777631 3467788888888888877766666666999999999887 43 45777777788999999
Q ss_pred CCchhhhHhhcCcHHHHHHHH
Q 037121 533 SQGNHQKVLDAGTVPLLADIL 553 (683)
Q Consensus 533 ~~~n~~~iv~~g~v~~Lv~lL 553 (683)
+..+...+.+.+.++.+++++
T Consensus 185 N~~Gl~~~~~~~~l~~~f~if 205 (379)
T PF06025_consen 185 NNRGLEKVKSSNPLDKLFEIF 205 (379)
T ss_pred CHHHHHHHHhcChHHHHHHHh
Confidence 999999999999999999999
No 273
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=84.51 E-value=3.6 Score=40.46 Aligned_cols=146 Identities=14% Similarity=0.111 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC-----CCHHHHHHHHHHHHhhccCCch--hhHHhhcCcHHH
Q 037121 392 EEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS-----PDQCVQENAVAALLKLSKHTSG--KKVIVESGGLKV 464 (683)
Q Consensus 392 ~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-----~d~~~q~~A~~aL~nLs~~~~~--r~~i~~~g~i~~ 464 (683)
.-.+.|+..|+.++. .++.+..+.++.+--.|..+|.. ...-++..+++.++.|..++.. -..+....++|.
T Consensus 115 nRvcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 115 NRVCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred hHHHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 345778888888887 57888888877643334455532 3355788899999999887654 444557889999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhc-------cCCChHHHHH-hhhcCCHHHHHHHHHHHHHcccCCch
Q 037121 465 ILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGE-------TPKAIPALVK-LIEEGTDCGKKNAVVAIFGLLLSQGN 536 (683)
Q Consensus 465 Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-------~~g~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n 536 (683)
.++++..| +.-.+..|+.++..+-.++..-.-|-+ ....+..++. +...+..+..+.+..+-..||..+..
T Consensus 194 cLrIme~g-SElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~a 272 (315)
T COG5209 194 CLRIMELG-SELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHA 272 (315)
T ss_pred HHHHHHhh-hHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhH
Confidence 99999999 766667777777666665543222211 1223333333 22335667788888887777777665
Q ss_pred hhh
Q 037121 537 HQK 539 (683)
Q Consensus 537 ~~~ 539 (683)
+..
T Consensus 273 R~l 275 (315)
T COG5209 273 RAL 275 (315)
T ss_pred HHH
Confidence 543
No 274
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=84.46 E-value=22 Score=39.15 Aligned_cols=152 Identities=18% Similarity=0.158 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccC-Cc--------hhhhHhhc---
Q 037121 476 EARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLS-QG--------NHQKVLDA--- 543 (683)
Q Consensus 476 e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~--------n~~~iv~~--- 543 (683)
...+..+|+..-|....+... ...+..|++++.+ +.....|+.++.-|..+ ++ +...+.+.
T Consensus 249 ~~~~~~~Wi~KaLv~R~~~~~-----~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F 321 (415)
T PF12460_consen 249 QALEILIWITKALVMRGHPLA-----TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF 321 (415)
T ss_pred HHHHHHHHHHHHHHHcCCchH-----HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH
Confidence 344445555555544322111 2345667777765 66677788888777776 22 12222232
Q ss_pred -CcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcC-ChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHH
Q 037121 544 -GTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTS-ALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREE 621 (683)
Q Consensus 544 -g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g-~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~ 621 (683)
-.+|.|++-. ...+...+...+.+|.++..+-.....+-+.+ .+|.|++-|... ++..+..++.+|..+....++-
T Consensus 322 ~~~~p~L~~~~-~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~~~~ 399 (415)
T PF12460_consen 322 TQVLPKLLEGF-KEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEAPEL 399 (415)
T ss_pred HHHHHHHHHHH-hhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcCHHH
Confidence 2567777776 34444577778888888876322222222333 378889988877 7889999999999998876443
Q ss_pred HHHHHhcCCCcHHHHHHh
Q 037121 622 VTASLAKDPSLMNSLYSL 639 (683)
Q Consensus 622 ~~~~l~~~~g~i~~L~~L 639 (683)
...-+ ..+++.|+.+
T Consensus 400 i~~hl---~sLI~~LL~l 414 (415)
T PF12460_consen 400 ISEHL---SSLIPRLLKL 414 (415)
T ss_pred HHHHH---HHHHHHHHhc
Confidence 33323 2356666654
No 275
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=84.20 E-value=0.91 Score=47.29 Aligned_cols=62 Identities=18% Similarity=0.350 Sum_probs=47.3
Q ss_pred CCCCCccCCCCcccCCCcee-ccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHHHHHH
Q 037121 275 LNPEDFRCPISLELMTDPVT-VSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLIHQFC 343 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~-~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~ 343 (683)
...+-+.||+|.+.|.-|+. -.-||..|-+|-.+ -...||.|+.++.+ +.+++++..++...
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~---~R~~amEkV~e~~~ 106 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIGN---IRCRAMEKVAEAVL 106 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCcccccccc---HHHHHHHHHHHhce
Confidence 45677899999999999974 46799999998543 25679999988773 35677777766543
No 276
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=84.16 E-value=1.4 Score=29.00 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=25.0
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHccc
Q 037121 505 IPALVKLIEEGTDCGKKNAVVAIFGLLL 532 (683)
Q Consensus 505 i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 532 (683)
+|.+++++.+++++++..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999998875
No 277
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=83.32 E-value=42 Score=36.84 Aligned_cols=184 Identities=14% Similarity=0.135 Sum_probs=103.0
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCchh-hH-HHHhcCChHHHHhhcCC-CCHHHHHHHHHHHHhhccCCchh
Q 037121 378 MSRFLARRLFFG-TNEEKNKAAYEIRLLAKSNIFN-RS-CIVESGAIPPLLNLLSS-PDQCVQENAVAALLKLSKHTSGK 453 (683)
Q Consensus 378 ~i~~Lv~~L~s~-~~~~~~~a~~~L~~La~~~~~~-r~-~i~~~G~i~~Lv~lL~s-~d~~~q~~A~~aL~nLs~~~~~r 453 (683)
.+..++..+... ..+.+..|+.+|..+...+.+. .. ++ .-.+..+++.|+. .+...+..|+.+|..++.+...|
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f--~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~ 364 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF--AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR 364 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH--HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence 556666777655 4567888998887776655221 11 11 1234567888877 78889999999999999776543
Q ss_pred hHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccC
Q 037121 454 KVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLS 533 (683)
Q Consensus 454 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 533 (683)
-.=-..-+|..+++.-.+..+.-.+..+-.++.-++..... ..|..+..++...+...--.++..+-.|+..
T Consensus 365 l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~--------~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~ 436 (516)
T KOG2956|consen 365 LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL--------QCIVNISPLILTADEPRAVAVIKMLTKLFER 436 (516)
T ss_pred hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch--------hHHHHHhhHHhcCcchHHHHHHHHHHHHHhh
Confidence 22112334556666666653333333333444444444332 2333344444444443333344444444432
Q ss_pred Cc--hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhh
Q 037121 534 QG--NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA 573 (683)
Q Consensus 534 ~~--n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa 573 (683)
=. .-..++ ..+.|.+++-. .+.+..++..|+-+|..+.
T Consensus 437 l~~EeL~~ll-~diaP~~iqay-~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 437 LSAEELLNLL-PDIAPCVIQAY-DSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred cCHHHHHHhh-hhhhhHHHHHh-cCchHHhhhhHHHhHHHHH
Confidence 11 111111 24677777777 6667788888887776554
No 278
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=82.79 E-value=0.89 Score=46.35 Aligned_cols=47 Identities=26% Similarity=0.474 Sum_probs=38.0
Q ss_pred CCCCccCCCCcccC---CCceeccCcccccHHHHHHHHHhCC--CCCCCCCc
Q 037121 276 NPEDFRCPISLELM---TDPVTVSTGQTYDRSSIQKWLKAGN--MLCPKTGE 322 (683)
Q Consensus 276 ~~~~f~CpIc~~~m---~dPv~~~cght~~r~cI~~w~~~~~--~~CP~c~~ 322 (683)
...-|.||+..+.- ..||.++|||..-...+.+.-+.|. +.||-|..
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 34569999988776 4588999999999999888777764 68999954
No 279
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=82.76 E-value=30 Score=40.89 Aligned_cols=266 Identities=18% Similarity=0.134 Sum_probs=153.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhc-CchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHh
Q 037121 379 SRFLARRLFFGTNEEKNKAAYEIRLLAKS-NIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIV 457 (683)
Q Consensus 379 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~ 457 (683)
+......++...++.+..++.....++.. +...+..+.....+|.+-.+..+.+..++...+....+++---. +..-+
T Consensus 357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~ti 435 (759)
T KOG0211|consen 357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERTI 435 (759)
T ss_pred hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcCc
Confidence 34444556665666777777666666643 22334556666678888888888888888877776666653221 11111
Q ss_pred hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch-hHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCch
Q 037121 458 ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKG-YRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGN 536 (683)
Q Consensus 458 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 536 (683)
.-.++.++..++.. ..+++.+..+.+..+-...+ ....+.. ...+|.++.+......+++......+..++...+
T Consensus 436 -~~llp~~~~~l~de-~~~V~lnli~~ls~~~~v~~v~g~~~~s-~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~- 511 (759)
T KOG0211|consen 436 -SELLPLLIGNLKDE-DPIVRLNLIDKLSLLEEVNDVIGISTVS-NSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG- 511 (759)
T ss_pred -cccChhhhhhcchh-hHHHHHhhHHHHHHHHhccCcccchhhh-hhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh-
Confidence 12345555566666 77788877776655543322 2233333 5677888888666667788888888888877655
Q ss_pred hhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccC--CChHHHHHHHHHHHHH
Q 037121 537 HQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTL--TSRAGKEYCVSILLSL 614 (683)
Q Consensus 537 ~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~--~s~~~ke~A~~~L~~L 614 (683)
..+......+.+..-+ .+....+.+.|...|..++..-. ..+-.. ..++.++.+...+ .....--.++..|..+
T Consensus 512 -~~~~~~~~~~l~~~~l-~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~~-~~i~k~L~~~~q~~y~~R~t~l~si~~la~v 587 (759)
T KOG0211|consen 512 -VEFFDEKLAELLRTWL-PDHVYSIREAAARNLPALVETFG-SEWARL-EEIPKLLAMDLQDNYLVRMTTLFSIHELAEV 587 (759)
T ss_pred -hHHhhHHHHHHHHhhh-hhhHHHHHHHHHHHhHHHHHHhC-cchhHH-HhhHHHHHHhcCcccchhhHHHHHHHHHHHH
Confidence 2333322223333333 23345677778777777764211 222222 2344444433332 0223333444444444
Q ss_pred hcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHh
Q 037121 615 CSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 615 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 661 (683)
+.. +.... .++|.+..+..+..+.+|-.|+..+..+-..
T Consensus 588 ~g~---ei~~~-----~Llp~~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 588 LGQ---EITCE-----DLLPVFLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred hcc---HHHHH-----HHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence 443 33332 2488999999999999999988887766543
No 280
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=82.67 E-value=0.96 Score=47.46 Aligned_cols=52 Identities=31% Similarity=0.576 Sum_probs=45.5
Q ss_pred CccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCC
Q 037121 279 DFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLP 331 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~p 331 (683)
...|.+++-.+.|||.+..|..|+-..|-.|++. +.+-|.+++++...++++
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIK 91 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCcccccccee
Confidence 5679999999999999999999999999999998 777888888887766655
No 281
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.77 E-value=1.6 Score=46.46 Aligned_cols=35 Identities=14% Similarity=0.333 Sum_probs=28.2
Q ss_pred CCccCCCCcccCCCc--e-eccCcccccHHHHHHHHHh
Q 037121 278 EDFRCPISLELMTDP--V-TVSTGQTYDRSSIQKWLKA 312 (683)
Q Consensus 278 ~~f~CpIc~~~m~dP--v-~~~cght~~r~cI~~w~~~ 312 (683)
.-|.|.||.+...-. + .++|+|.||++|...++..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~ 220 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTI 220 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHH
Confidence 368899998766442 2 4699999999999999986
No 282
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=81.56 E-value=4.6 Score=47.37 Aligned_cols=181 Identities=16% Similarity=0.174 Sum_probs=111.8
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhccCCch--------------hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 037121 422 PPLLNLLSSPDQCVQENAVAALLKLSKHTSG--------------KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFY 487 (683)
Q Consensus 422 ~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~--------------r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~ 487 (683)
..|+.+|++ +++-..|+.++--+..|... |.++. ..++|.+++.+... +...+.+-..+|.+
T Consensus 818 ~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~-~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 818 EKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETA-PGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccC-CccchhHHHHHHHH
Confidence 356666654 33444455555555444332 22222 35677788777744 56677787888877
Q ss_pred hccCchhHHHhh-ccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCch-hhhHhhcCcHHHHHHHHccCCC---hhHH
Q 037121 488 LTSVKGYRKLIG-ETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGN-HQKVLDAGTVPLLADILASSNR---TELI 562 (683)
Q Consensus 488 Ls~~~~~~~~i~-~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n-~~~iv~~g~v~~Lv~lL~~~~~---~~~~ 562 (683)
+-.+-. +..++ .-+..+|.|++-|.-.|..++-.+..++.-+....+. ....++ -.||.++.+= .+++ ..++
T Consensus 894 Vl~~vP-~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls-~~~~n~~~~VR 970 (1030)
T KOG1967|consen 894 VLTNVP-KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLS-SDNDNNMMVVR 970 (1030)
T ss_pred HHhcCC-HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcC-CCCCcchhHHH
Confidence 766433 33332 2345677777777777888888888887766554433 222222 3566666664 3332 5688
Q ss_pred HHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHH
Q 037121 563 TDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSI 610 (683)
Q Consensus 563 ~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~ 610 (683)
+.|+.+|..|.. .|...-.-.+..++..|.+.|.+. -..+|+.|+.+
T Consensus 971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~t 1018 (1030)
T KOG1967|consen 971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDT 1018 (1030)
T ss_pred HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHH
Confidence 899999999987 555444444556678888889876 55677777765
No 283
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=81.54 E-value=19 Score=40.30 Aligned_cols=119 Identities=19% Similarity=0.200 Sum_probs=83.3
Q ss_pred cCChHHHHhh-cCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHH
Q 037121 418 SGAIPPLLNL-LSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRK 496 (683)
Q Consensus 418 ~G~i~~Lv~l-L~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~ 496 (683)
.|+|..|++. .+++|.+++..|+-+|+-++.++ ...+...+++|...++..+|...+-+|.--|.+...+
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~- 620 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK- 620 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecC--------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-
Confidence 4677777777 67788999999999998887653 3456778888888888899988888887777654332
Q ss_pred HhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCch--hhhHhhcCcHHHHHHHH
Q 037121 497 LIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGN--HQKVLDAGTVPLLADIL 553 (683)
Q Consensus 497 ~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n--~~~iv~~g~v~~Lv~lL 553 (683)
-++..|-.+..+.+.-++..|+.++.-+...... ...+ .+++..+.+++
T Consensus 621 ------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI 671 (926)
T COG5116 621 ------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVI 671 (926)
T ss_pred ------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHH
Confidence 2445555666666777888888888766653321 1111 24566677777
No 284
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=81.54 E-value=0.64 Score=48.69 Aligned_cols=46 Identities=15% Similarity=0.365 Sum_probs=37.2
Q ss_pred CCCCccCCCCcccCC-Cce---eccCcccccHHHHHHHHHh-CCCCCCCCC
Q 037121 276 NPEDFRCPISLELMT-DPV---TVSTGQTYDRSSIQKWLKA-GNMLCPKTG 321 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~-dPv---~~~cght~~r~cI~~w~~~-~~~~CP~c~ 321 (683)
-.-++.|..|++.+- .|- .+||.|.|--.|.+.++.. +..+||.|+
T Consensus 362 ~e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Cr 412 (518)
T KOG1941|consen 362 EETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCR 412 (518)
T ss_pred HHHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHH
Confidence 345789999999872 222 3699999999999999976 567999998
No 285
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=81.35 E-value=0.95 Score=46.25 Aligned_cols=44 Identities=23% Similarity=0.535 Sum_probs=34.1
Q ss_pred CCccCCCCcccCC----CceeccCcccccHHHHHHHHHhCCCCCCCCCc
Q 037121 278 EDFRCPISLELMT----DPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGE 322 (683)
Q Consensus 278 ~~f~CpIc~~~m~----dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~ 322 (683)
.++.||||.+.+. +|...+|||+.-..|.+.....+ .+||.|.+
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 4566999998774 56678999987766666666666 99999976
No 286
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=80.43 E-value=25 Score=41.89 Aligned_cols=181 Identities=15% Similarity=0.089 Sum_probs=112.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCCh---HHHHhhc-CCCCHHHHHHHHHHHHhhccCCchhhH
Q 037121 380 RFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAI---PPLLNLL-SSPDQCVQENAVAALLKLSKHTSGKKV 455 (683)
Q Consensus 380 ~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i---~~Lv~lL-~s~d~~~q~~A~~aL~nLs~~~~~r~~ 455 (683)
+.+-..+.+.+|..+.+|+..+........ .....|.. -.++... .+.|..+...|+.+|.-++..-.....
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~ 331 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR 331 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence 555567778899999999999988887433 12223333 3333322 345677777888888777743222122
Q ss_pred HhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCc
Q 037121 456 IVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQG 535 (683)
Q Consensus 456 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 535 (683)
=...++++.+++-+..- ...++..+..++-..+. .......++.+...++++++..+......+.......+
T Consensus 332 ~~~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~n-------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~ 403 (815)
T KOG1820|consen 332 KYAKNVFPSLLDRLKEK-KSELRDALLKALDAILN-------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLG 403 (815)
T ss_pred HHHHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHh-------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcC
Confidence 22456778888877765 45566655555544433 11114467778888899999888876665554443322
Q ss_pred --hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhh
Q 037121 536 --NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA 573 (683)
Q Consensus 536 --n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa 573 (683)
....-.-.+.++.++... .+.+.+++..|..+++.+.
T Consensus 404 ~~~~~~~t~~~l~p~~~~~~-~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 404 PKTVEKETVKTLVPHLIKHI-NDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred CcCcchhhHHHHhHHHhhhc-cCCcHHHHHHHHHHHHHHH
Confidence 233333335677777777 6778899988888887664
No 287
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=80.19 E-value=12 Score=38.42 Aligned_cols=183 Identities=17% Similarity=0.172 Sum_probs=106.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcC--ChHHHHhhcCC----CCHHHHHHHHHHHHhhccCCch
Q 037121 379 SRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESG--AIPPLLNLLSS----PDQCVQENAVAALLKLSKHTSG 452 (683)
Q Consensus 379 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G--~i~~Lv~lL~s----~d~~~q~~A~~aL~nLs~~~~~ 452 (683)
...+...+.+=+.+.+.=++..+|.++.+ +..-..+...+ ....+..++.. .....+.-+++++.|+-.+..+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~ 143 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG 143 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc
Confidence 34444545444455677788888887764 33334444332 24444444432 5678899999999999999998
Q ss_pred hhHHhhc-C-cHHHHHHHHcCCC---CHHHHHHHHHHHHHhccCchhHHH--hhccCCChHHHHHhhhc--CCHHHHHHH
Q 037121 453 KKVIVES-G-GLKVILKVLKSGL---SLEARQIAAATLFYLTSVKGYRKL--IGETPKAIPALVKLIEE--GTDCGKKNA 523 (683)
Q Consensus 453 r~~i~~~-g-~i~~Lv~lL~~~~---~~e~~~~Aa~~L~~Ls~~~~~~~~--i~~~~g~i~~Lv~lL~~--~~~~~~~~A 523 (683)
+..+... + .+-..+.-+.... +..++..++.+++|++..-..... -.. ...+..+++.+.. .+++....+
T Consensus 144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~-~~ll~~i~~~~~~~~~d~Ea~~R~ 222 (268)
T PF08324_consen 144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQ-SELLSSIIEVLSREESDEEALYRL 222 (268)
T ss_dssp HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHH-HHHHHHHHHHCHCCHTSHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHHHHHHHhccccCCHHHHHHH
Confidence 8888743 3 2333333233321 466788888889999863221110 000 1234555553322 578999999
Q ss_pred HHHHHHcccCCchhhhHhhc-CcHHHHHHHHccCCChhHHH
Q 037121 524 VVAIFGLLLSQGNHQKVLDA-GTVPLLADILASSNRTELIT 563 (683)
Q Consensus 524 ~~aL~nLs~~~~n~~~iv~~-g~v~~Lv~lL~~~~~~~~~~ 563 (683)
+.||.+|...+.......+. |+-..+-..-....++.+.+
T Consensus 223 LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~ 263 (268)
T PF08324_consen 223 LVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKE 263 (268)
T ss_dssp HHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHH
Confidence 99999999877766666553 44444433332233444443
No 288
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=79.93 E-value=2.1 Score=37.19 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=27.9
Q ss_pred CCCCCCccCCCCcccCCCcee--ccCcccccHHHHH
Q 037121 274 CLNPEDFRCPISLELMTDPVT--VSTGQTYDRSSIQ 307 (683)
Q Consensus 274 ~~~~~~f~CpIc~~~m~dPv~--~~cght~~r~cI~ 307 (683)
+.+.++-.|++|+..+.+++. .||||.|...|+.
T Consensus 73 v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 73 VVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 366778889999999987764 4999999988865
No 289
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=79.71 E-value=29 Score=37.37 Aligned_cols=81 Identities=12% Similarity=0.044 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCC-----CHHHHHHHHHHHHhhccCC-chhhHHh-hcCcHH
Q 037121 391 NEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSP-----DQCVQENAVAALLKLSKHT-SGKKVIV-ESGGLK 463 (683)
Q Consensus 391 ~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~-----d~~~q~~A~~aL~nLs~~~-~~r~~i~-~~g~i~ 463 (683)
.++..++++.|-++..++...+..+.+......+++++... -.+++.--+..|.-|+... +.|.+++ +.++++
T Consensus 111 ~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~ 190 (532)
T KOG4464|consen 111 MHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLE 190 (532)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccH
Confidence 46677888899999998888888888888777777766431 1123333455555554433 3466655 889999
Q ss_pred HHHHHHcC
Q 037121 464 VILKVLKS 471 (683)
Q Consensus 464 ~Lv~lL~~ 471 (683)
.+...|..
T Consensus 191 ~lt~~led 198 (532)
T KOG4464|consen 191 LLTNWLED 198 (532)
T ss_pred HHHHHhhc
Confidence 99999875
No 290
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=79.63 E-value=1.5 Score=37.28 Aligned_cols=27 Identities=22% Similarity=0.636 Sum_probs=24.0
Q ss_pred cCcccccHHHHHHHHHhCCCCCCCCCcc
Q 037121 296 STGQTYDRSSIQKWLKAGNMLCPKTGEK 323 (683)
Q Consensus 296 ~cght~~r~cI~~w~~~~~~~CP~c~~~ 323 (683)
.|+|.|--.||.+|++. ...||.|.+.
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 59999999999999998 7789998764
No 291
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=79.55 E-value=40 Score=35.27 Aligned_cols=162 Identities=20% Similarity=0.142 Sum_probs=101.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhcc-CCch-h------
Q 037121 382 LARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSK-HTSG-K------ 453 (683)
Q Consensus 382 Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~-~~~~-r------ 453 (683)
++..+.+.++.+|..|++.|+..+--+.+. +. ..++.+...+..++..++..|+.++..+.. ++.. -
T Consensus 32 I~P~v~~~~~~vR~~al~cLGl~~Lld~~~----a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~ 106 (298)
T PF12719_consen 32 ILPAVQSSDPAVRELALKCLGLCCLLDKEL----AK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDN 106 (298)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhChHH----HH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhcc
Confidence 336778889999999999999988755432 21 235778888877899999999999988752 2211 1
Q ss_pred -hHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhc----CCHHHHHHHHHHHH
Q 037121 454 -KVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEE----GTDCGKKNAVVAIF 528 (683)
Q Consensus 454 -~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~----~~~~~~~~A~~aL~ 528 (683)
......+.+..+.+.+.+. +.+++..|+..+..|-....... .+.++..|+-+--+ ++.+.+..-...+-
T Consensus 107 ~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp 181 (298)
T PF12719_consen 107 DESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFP 181 (298)
T ss_pred CccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHH
Confidence 1122345677788888888 88899888888888755432111 02233333332222 22344433333344
Q ss_pred HcccCCchhhhHhhcCcHHHHHHHH
Q 037121 529 GLLLSQGNHQKVLDAGTVPLLADIL 553 (683)
Q Consensus 529 nLs~~~~n~~~iv~~g~v~~Lv~lL 553 (683)
..+.........+..++++.+-.+.
T Consensus 182 ~y~~s~~~~Q~~l~~~f~~~l~~~~ 206 (298)
T PF12719_consen 182 VYASSSPENQERLAEAFLPTLRTLS 206 (298)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 5555554445555566777776666
No 292
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=79.25 E-value=1.9 Score=46.89 Aligned_cols=182 Identities=18% Similarity=0.128 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHHhhccCCchhh-HHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC-----ch---hHH-Hhhcc
Q 037121 432 DQCVQENAVAALLKLSKHTSGKK-VIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSV-----KG---YRK-LIGET 501 (683)
Q Consensus 432 d~~~q~~A~~aL~nLs~~~~~r~-~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-----~~---~~~-~i~~~ 501 (683)
+.-+...|+.++.-+..++..+. .+.-..+...++..|.+. ....|+.++|++.|++.- +. ... .++.
T Consensus 404 ~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~- 481 (728)
T KOG4535|consen 404 NRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL- 481 (728)
T ss_pred HHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-
Confidence 33456677788877777777754 444677888888888876 678899999999999741 11 111 1111
Q ss_pred CCChHHHHHhhh---cCCHHHHHHHHHHHHHcccCCch----hhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC
Q 037121 502 PKAIPALVKLIE---EGTDCGKKNAVVAIFGLLLSQGN----HQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE 574 (683)
Q Consensus 502 ~g~i~~Lv~lL~---~~~~~~~~~A~~aL~nLs~~~~n----~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~ 574 (683)
.+..++.... -...+++.+|..+|.|++..-+. --.....|.+..++..........++=.++.+++||-.
T Consensus 482 --ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk 559 (728)
T KOG4535|consen 482 --LLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK 559 (728)
T ss_pred --HHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhc
Confidence 2222222221 13467888899999888753221 11112223333333332122356788899999999998
Q ss_pred ChhhHH-HH-HhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcC
Q 037121 575 DIQGTS-TI-LKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSN 617 (683)
Q Consensus 575 ~~~~~~-~i-~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~ 617 (683)
++..+- .. ......+.|..++.....-+++-+|+++|..-...
T Consensus 560 n~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 560 NPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 765421 11 12123677888777654778899999998655543
No 293
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=79.23 E-value=6 Score=37.23 Aligned_cols=107 Identities=22% Similarity=0.141 Sum_probs=75.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHH-hcCChHHHHhhcC--CCCHHHHHHHHHHHHhhccCCchhhHH
Q 037121 380 RFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIV-ESGAIPPLLNLLS--SPDQCVQENAVAALLKLSKHTSGKKVI 456 (683)
Q Consensus 380 ~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~-~~G~i~~Lv~lL~--s~d~~~q~~A~~aL~nLs~~~~~r~~i 456 (683)
.++-..+..++.+....++..+..+--..++....+. ..|+++.++.+.. +.+..++..++.+|..=+.+...|..|
T Consensus 46 ~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I 125 (157)
T PF11701_consen 46 DFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFI 125 (157)
T ss_dssp HHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCC
T ss_pred HHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHH
Confidence 4444455555555777888877777666665555444 5699999999998 788999999988888877777777777
Q ss_pred hhcCcHHHHHHHHcCCCCHH-HHHHHHHHHHH
Q 037121 457 VESGGLKVILKVLKSGLSLE-ARQIAAATLFY 487 (683)
Q Consensus 457 ~~~g~i~~Lv~lL~~~~~~e-~~~~Aa~~L~~ 487 (683)
.+. +++-|-+.++.+.+.. .|..|+-.|..
T Consensus 126 ~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 126 SKN-YVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHH-CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 655 5888888887653455 67777666653
No 294
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.06 E-value=34 Score=40.26 Aligned_cols=184 Identities=13% Similarity=0.040 Sum_probs=108.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcC
Q 037121 381 FLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESG 460 (683)
Q Consensus 381 ~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g 460 (683)
..+..+.+..+.++-.|+..|+.+.+. ......+...+++...+..|++.|.-+=.+|+..+.-|+.. ....
T Consensus 731 eai~sl~d~qvpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~ 802 (982)
T KOG4653|consen 731 EAISSLHDDQVPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPED 802 (982)
T ss_pred HHHHHhcCCcccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchh
Confidence 334555556667888899999999873 24555677789999999999999998888888877777633 3344
Q ss_pred cHHHHHHHHcC-C--CCHHHHHHHHHHHHHhccCc-hhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCch
Q 037121 461 GLKVILKVLKS-G--LSLEARQIAAATLFYLTSVK-GYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGN 536 (683)
Q Consensus 461 ~i~~Lv~lL~~-~--~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 536 (683)
.++.+.+.-.+ . ...+.+-..-.++.++...- +-..+.. .-.+...+..+++++..-+..++..|.+||.-...
T Consensus 803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~--~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK--AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH--HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence 56666653222 1 01122222222333222110 0000000 11344455555655556677888888888864332
Q ss_pred hhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC
Q 037121 537 HQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE 574 (683)
Q Consensus 537 ~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~ 574 (683)
...=.=..++..++.+...+...-++..|+.++..+-.
T Consensus 881 ~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 881 QVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred hhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 21111123455566666566677888888888887754
No 295
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=76.85 E-value=9.2 Score=43.32 Aligned_cols=95 Identities=20% Similarity=0.159 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIV 457 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~ 457 (683)
.+..++......+..+|..|++.|-.+|++++++...++ ..|+++|.++++.....+=.+|..|-..+
T Consensus 60 Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva-----DvL~QlL~tdd~~E~~~v~~sL~~ll~~d------- 127 (556)
T PF05918_consen 60 AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA-----DVLVQLLQTDDPVELDAVKNSLMSLLKQD------- 127 (556)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH-----HHHHHHTT---HHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH-----HHHHHHHhcccHHHHHHHHHHHHHHHhcC-------
Confidence 566777778888889999999999999998877766554 78999999988665554444554443211
Q ss_pred hcCcHHHHHHHHc---CCCCHHHHHHHHHHH
Q 037121 458 ESGGLKVILKVLK---SGLSLEARQIAAATL 485 (683)
Q Consensus 458 ~~g~i~~Lv~lL~---~~~~~e~~~~Aa~~L 485 (683)
-.|.+..+...+. ++ +..+|+.+...|
T Consensus 128 ~k~tL~~lf~~i~~~~~~-de~~Re~~lkFl 157 (556)
T PF05918_consen 128 PKGTLTGLFSQIESSKSG-DEQVRERALKFL 157 (556)
T ss_dssp HHHHHHHHHHHHH---HS--HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccC-chHHHHHHHHHH
Confidence 1334444444443 34 556677766655
No 296
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=76.72 E-value=87 Score=31.49 Aligned_cols=136 Identities=16% Similarity=0.080 Sum_probs=83.6
Q ss_pred HHHHHh-cCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhc
Q 037121 381 FLARRL-FFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVES 459 (683)
Q Consensus 381 ~Lv~~L-~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~ 459 (683)
.|+..+ +..+++.+...++.|..++.++..+... ++..|..+...++...+--+...+..+-..++. ..
T Consensus 4 ~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r-~f---- 73 (234)
T PF12530_consen 4 LLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDR-HF---- 73 (234)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch-HH----
Confidence 344433 3457888999999999999865222211 234566666666666655556666555433221 11
Q ss_pred CcHHHHHHH--Hc-------CCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhh-hcCCHHHHHHHHHHHHH
Q 037121 460 GGLKVILKV--LK-------SGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLI-EEGTDCGKKNAVVAIFG 529 (683)
Q Consensus 460 g~i~~Lv~l--L~-------~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~n 529 (683)
|.+..++.. ++ .....+.....++.+..+|....+. . ...++.+..++ .+.++..+..++.+|..
T Consensus 74 ~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g-~~ll~~ls~~L~~~~~~~~~alale~l~~ 148 (234)
T PF12530_consen 74 PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----G-VDLLPLLSGCLNQSCDEVAQALALEALAP 148 (234)
T ss_pred HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----H-HHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 334444433 11 1223445555677888888766551 1 34778888888 67778888899999999
Q ss_pred cc
Q 037121 530 LL 531 (683)
Q Consensus 530 Ls 531 (683)
||
T Consensus 149 Lc 150 (234)
T PF12530_consen 149 LC 150 (234)
T ss_pred HH
Confidence 98
No 297
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=76.33 E-value=42 Score=39.62 Aligned_cols=92 Identities=27% Similarity=0.278 Sum_probs=63.8
Q ss_pred HHHHccc-CCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChH--HHHHhhccCCChH
Q 037121 526 AIFGLLL-SQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALP--VIIGLLQTLTSRA 602 (683)
Q Consensus 526 aL~nLs~-~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~--~Lv~lL~~~~s~~ 602 (683)
+|+++.. .+++|..+++.|++..+...+..-....+...++++|.|++...+.+........+. ..-.++....+.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7778776 456899999999999999999655778999999999999997554443332222222 2222444332335
Q ss_pred HHHHHHHHHHHHhcC
Q 037121 603 GKEYCVSILLSLCSN 617 (683)
Q Consensus 603 ~ke~A~~~L~~L~~~ 617 (683)
.-.+|+++|..+..+
T Consensus 574 rsY~~~siLa~ll~~ 588 (699)
T KOG3665|consen 574 RSYNAASILALLLSD 588 (699)
T ss_pred HHHHHHHHHHHHHhC
Confidence 666788888887775
No 298
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=76.27 E-value=13 Score=34.39 Aligned_cols=73 Identities=14% Similarity=0.134 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-CchhhHHHHhcCChHHHHhhcC-CCCHHHHHHHHHHHHhhcc
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKS-NIFNRSCIVESGAIPPLLNLLS-SPDQCVQENAVAALLKLSK 448 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~-s~d~~~q~~A~~aL~nLs~ 448 (683)
+..+..|.++|.++++.+|..|+..|-.+.+. +......++..+++..|+.++. ..+..++..++..+.+-+.
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 34677888999999999999999999999985 3556677888899999999997 4788999999999988763
No 299
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.02 E-value=1.2e+02 Score=33.61 Aligned_cols=261 Identities=13% Similarity=0.017 Sum_probs=133.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHH-hhcCCCCHHHHHHHHHHHHhhccCCchhhHH
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLL-NLLSSPDQCVQENAVAALLKLSKHTSGKKVI 456 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv-~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i 456 (683)
.+..+..+..+.+...+.-|++.|.+.+..-+.-....... .+..++ .+....+.+++..|+.+|..+...-.++...
T Consensus 259 ~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~ 337 (533)
T KOG2032|consen 259 VLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE 337 (533)
T ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence 45556666667777778889999999888644433333222 233333 3445567899999999998887554443322
Q ss_pred h-hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhc---c-CCChHHHHHhhhcCCHHHHHHHHHHHHHcc
Q 037121 457 V-ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGE---T-PKAIPALVKLIEEGTDCGKKNAVVAIFGLL 531 (683)
Q Consensus 457 ~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~---~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 531 (683)
- =..+.-.+..++++. +.+.|.+|...+..|+.......+++- . .+..|.++. |.+.++.+ ..|+...+..|
T Consensus 338 ~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllh-l~d~~p~v-a~ACr~~~~~c 414 (533)
T KOG2032|consen 338 SYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLH-LQDPNPYV-ARACRSELRTC 414 (533)
T ss_pred hhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceee-eCCCChHH-HHHHHHHHHhc
Confidence 1 122333455566666 788999888888777764433222221 1 234444443 46555533 44666666665
Q ss_pred cCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHH-----hh-CChhhHHHHHhcCChHHHHHhhccCCChHHHH
Q 037121 532 LSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLAN-----LA-EDIQGTSTILKTSALPVIIGLLQTLTSRAGKE 605 (683)
Q Consensus 532 ~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~n-----La-~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke 605 (683)
.-.-.+.... ++++..++.. +. -...+.| |. -+++....... ...-++... -+-+++
T Consensus 415 ~p~l~rke~~--~~~q~~ld~~-------~~--~~q~Fyn~~c~~L~~i~~d~l~~~~t-----~~~~~f~ss-we~vr~ 477 (533)
T KOG2032|consen 415 YPNLVRKELY--HLFQESLDTD-------MA--RFQAFYNQWCIQLNHIHPDILMLLLT-----EDQHIFSSS-WEQVRE 477 (533)
T ss_pred CchhHHHHHH--HHHhhhhHHh-------HH--HHHHHHHHHHHHHhhhCHHHHHHHHH-----hchhheecc-hHHHHH
Confidence 5332222221 2233222111 10 1111111 11 12221111111 111123322 334555
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHH
Q 037121 606 YCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHK 660 (683)
Q Consensus 606 ~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 660 (683)
.|+..--++.-+.....+.... ..-+...|-.+....-+.+++.|.+++..+.+
T Consensus 478 aavl~t~~~vd~l~~~~c~~~d-~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 478 AAVLKTTRSVDSLVRAACSSAD-GLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHHHHhHHHHHHHhh-HHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 5555444444333222222211 12256677777788888999888888877654
No 300
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=75.94 E-value=1 Score=44.69 Aligned_cols=40 Identities=13% Similarity=0.249 Sum_probs=28.7
Q ss_pred CCce-eccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCc
Q 037121 290 TDPV-TVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPN 332 (683)
Q Consensus 290 ~dPv-~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn 332 (683)
.+|. +++|+|.||..|...-. ...||.|++++....+.+|
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred CCceeeeechhhhhhhhcccCC---ccccccccceeeeeecccc
Confidence 5665 46899999998855322 2389999998766555554
No 301
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.93 E-value=0.67 Score=46.77 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=31.2
Q ss_pred CCccCCCCcccCCCceeccCcccc-cHHHHHHHHHhCCCCCCCCCccc
Q 037121 278 EDFRCPISLELMTDPVTVSTGQTY-DRSSIQKWLKAGNMLCPKTGEKL 324 (683)
Q Consensus 278 ~~f~CpIc~~~m~dPv~~~cght~-~r~cI~~w~~~~~~~CP~c~~~l 324 (683)
.+..|.||++.-+|=|.++|||.. |-.|=. .-..||+||+.+
T Consensus 299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGk-----rm~eCPICRqyi 341 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLECGHMVTCTKCGK-----RMNECPICRQYI 341 (350)
T ss_pred HHHHHHHHhcCCcceEEeecCcEEeehhhcc-----ccccCchHHHHH
Confidence 378999999999999999999953 444411 123799998743
No 302
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.74 E-value=14 Score=44.71 Aligned_cols=140 Identities=17% Similarity=0.118 Sum_probs=102.4
Q ss_pred ChHHHHhhcC----CCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhH
Q 037121 420 AIPPLLNLLS----SPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYR 495 (683)
Q Consensus 420 ~i~~Lv~lL~----s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~ 495 (683)
+.|.++...+ .+|+++|..|.-+|+.+-.-+.. + ....++.++.++....++-+|-|+..++..|+..-.+-
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~---f-ces~l~llftimeksp~p~IRsN~VvalgDlav~fpnl 995 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE---F-CESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL 995 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH---H-HHHHHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence 5666777664 37899999999999887543322 1 23358899999986558889999999998887643322
Q ss_pred HHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhh
Q 037121 496 KLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA 573 (683)
Q Consensus 496 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa 573 (683)
. ...-+.|...|.+.++.+++.|+.+|.+|..++-.+.+ |.++-+..+| .++++++.+-|=....-|+
T Consensus 996 i-----e~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVK----Gql~eMA~cl-~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 996 I-----EPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVK----GQLSEMALCL-EDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred c-----chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhc----ccHHHHHHHh-cCCcHHHHHHHHHHHHHhh
Confidence 1 23446677788889999999999999999887644433 8888889999 7788888777764444444
No 303
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=74.55 E-value=3.4 Score=37.38 Aligned_cols=44 Identities=16% Similarity=0.358 Sum_probs=34.0
Q ss_pred CccCCCCcccCCC--cee-ccCcc------cccHHHHHHHHHhCCCCCCCCCcc
Q 037121 279 DFRCPISLELMTD--PVT-VSTGQ------TYDRSSIQKWLKAGNMLCPKTGEK 323 (683)
Q Consensus 279 ~f~CpIc~~~m~d--Pv~-~~cgh------t~~r~cI~~w~~~~~~~CP~c~~~ 323 (683)
...|.||.+...+ -|+ ++||. -||..|+.+|-+. ....|.-|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~-~~rDPfnR~I 78 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE-RNRDPFNRNI 78 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh-ccCCCcccce
Confidence 5679999988876 775 57875 4999999999654 6678876554
No 304
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=74.36 E-value=1.8e+02 Score=34.03 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=63.6
Q ss_pred CCChHHHHHh-hhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHH
Q 037121 502 PKAIPALVKL-IEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTS 580 (683)
Q Consensus 502 ~g~i~~Lv~l-L~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~ 580 (683)
.++|..|+.. ..+.+..+++.|..+|.-++..+.+ .++..|.+|..+-++.++.-++.+|+.-|.....+.
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e 624 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE 624 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH
Confidence 5577777777 4567889999999999887765443 355667788556688888889899988776544333
Q ss_pred HHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHh
Q 037121 581 TILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLC 615 (683)
Q Consensus 581 ~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~ 615 (683)
+| ..|--+.... ..-+|.-|+-++..+.
T Consensus 625 Ai------~lLepl~~D~-~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 625 AI------NLLEPLTSDP-VDFVRQGALIALAMIM 652 (929)
T ss_pred HH------HHHhhhhcCh-HHHHHHHHHHHHHHHH
Confidence 32 1121233332 3446666665555433
No 305
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=74.24 E-value=57 Score=39.00 Aligned_cols=195 Identities=13% Similarity=0.142 Sum_probs=117.7
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHh-hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHh
Q 037121 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIV-ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLI 498 (683)
Q Consensus 420 ~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i 498 (683)
..+.+-.-+.+.+-.-+..|+.-+........ +.... ..|.+-.++.+...+.+..+...|+..|..++..-.....=
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 44555556667777778888888777665544 11111 33445556666656658888889999888887632221111
Q ss_pred hccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhh
Q 037121 499 GETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQG 578 (683)
Q Consensus 499 ~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~ 578 (683)
.. .+++|.|++-+.+.....+..+..++-..+. ... -....+.++..+ .+.++.....+...+......-..
T Consensus 333 ~~-~~v~p~lld~lkekk~~l~d~l~~~~d~~~n-s~~-----l~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 333 YA-KNVFPSLLDRLKEKKSELRDALLKALDAILN-STP-----LSKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred HH-HhhcchHHHHhhhccHHHHHHHHHHHHHHHh-ccc-----HHHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCC
Confidence 12 4688888888877665555544444333322 111 112455667777 778899999988888776542221
Q ss_pred HHHHHhc----CChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHH
Q 037121 579 TSTILKT----SALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASL 626 (683)
Q Consensus 579 ~~~i~~~----g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l 626 (683)
..... +.++.++....+. +..+|..|..++..+....++.+...+
T Consensus 405 --~~~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge~~~~k~ 453 (815)
T KOG1820|consen 405 --KTVEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGEEVFKKL 453 (815)
T ss_pred --cCcchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 11111 3456666666555 788999999988777665545444433
No 306
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=73.95 E-value=1.1e+02 Score=37.19 Aligned_cols=223 Identities=15% Similarity=0.111 Sum_probs=126.9
Q ss_pred cCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHH
Q 037121 418 SGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKL 497 (683)
Q Consensus 418 ~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 497 (683)
.+++..|+..|++.|..++-.|++-++.+....+ . .+ ...++..+++++....+..+-..|+-+|..|+...=-...
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp-~-~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP-P-EL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc-H-HH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 4678899999999999999999999999986554 1 11 2336777777666553566777888889888763211111
Q ss_pred hhccCCChHHHHHhhhcC--------CHHHHHHHHHHHHHcccCCch--hhhHhhcCcHHHH-HHHHccCCChhHHHHHH
Q 037121 498 IGETPKAIPALVKLIEEG--------TDCGKKNAVVAIFGLLLSQGN--HQKVLDAGTVPLL-ADILASSNRTELITDSL 566 (683)
Q Consensus 498 i~~~~g~i~~Lv~lL~~~--------~~~~~~~A~~aL~nLs~~~~n--~~~iv~~g~v~~L-v~lL~~~~~~~~~~~al 566 (683)
.. ..++|.++.-+.-+ ...++..|+.+++.++..-+- ..-+++. ..+.| ..-+ .+++-..+..|.
T Consensus 417 ~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~Al-FDrevncRRAAs 492 (1133)
T KOG1943|consen 417 LL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVAL-FDREVNCRRAAS 492 (1133)
T ss_pred HH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHh-cCchhhHhHHHH
Confidence 11 23555555544322 245777888888877753321 1223322 22222 2233 567778888888
Q ss_pred HHHHHhhCChhhHHHHHhcCChHHHHHhhccCC--ChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHh-HhcC
Q 037121 567 AVLANLAEDIQGTSTILKTSALPVIIGLLQTLT--SRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSL-TTDG 643 (683)
Q Consensus 567 ~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~--s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~L-l~~g 643 (683)
++|.-..+ ..|.+|.=+.++.+-. +-..+.+|...+..-...- +.....+ +..|+.- +.+=
T Consensus 493 AAlqE~VG---------R~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~-~~y~~~~------f~~L~t~Kv~HW 556 (1133)
T KOG1943|consen 493 AALQENVG---------RQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEF-SGYREPV------FNHLLTKKVCHW 556 (1133)
T ss_pred HHHHHHhc---------cCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhh-hhHHHHH------HHHHHhcccccc
Confidence 88764433 2233332222222210 3344555555443322221 1112222 2222222 3444
Q ss_pred CHHHHHHHHHHHHHHHHhhh
Q 037121 644 TSQARKKARSLIKILHKFIE 663 (683)
Q Consensus 644 ~~~~k~~A~~lL~~l~~~~~ 663 (683)
+..+|+-|++.|+.|+.+..
T Consensus 557 d~~irelaa~aL~~Ls~~~p 576 (1133)
T KOG1943|consen 557 DVKIRELAAYALHKLSLTEP 576 (1133)
T ss_pred cHHHHHHHHHHHHHHHHhhH
Confidence 88999999999999887754
No 307
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=73.67 E-value=67 Score=32.98 Aligned_cols=178 Identities=17% Similarity=0.198 Sum_probs=100.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-------CchhhHHHHhcCChHHHHhhcCCCC----HHHHHHHHHHHHhh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKS-------NIFNRSCIVESGAIPPLLNLLSSPD----QCVQENAVAALLKL 446 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~-------~~~~r~~i~~~G~i~~Lv~lL~s~d----~~~q~~A~~aL~nL 446 (683)
....+++.|.+++.. ..++..|..++.. +.++|-.+.-.+.+|.++.-+.+++ ......++..|..+
T Consensus 65 lq~Ll~KGL~Ss~t~--e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~ 142 (262)
T PF14225_consen 65 LQPLLLKGLRSSSTY--ELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQV 142 (262)
T ss_pred HHHHHhCccCCCCcH--HHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHH
Confidence 444555666554321 2233333444321 2335655555677888888777766 13334556777777
Q ss_pred ccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHH
Q 037121 447 SKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVA 526 (683)
Q Consensus 447 s~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~a 526 (683)
+.... .+.+..+.....++.-.....-...+...++.. +-... . ...+-.|+.+|.++.+..+...+..
T Consensus 143 a~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~--f~P~~-~-~~~l~~Ll~lL~n~~~w~~~~~L~i 211 (262)
T PF14225_consen 143 AEAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREA--FFPDH-E-FQILTFLLGLLENGPPWLRRKTLQI 211 (262)
T ss_pred HHhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--hCchh-H-HHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 63211 123333444333331111222222233333221 10000 0 2356779999999999999999999
Q ss_pred HHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhh
Q 037121 527 IFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA 573 (683)
Q Consensus 527 L~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa 573 (683)
|+.+..+-+.+.. ...+.+.+++++| ..+...+|+.+|.+..
T Consensus 212 L~~ll~~~d~~~~-~~~dlispllrlL----~t~~~~eAL~VLd~~v 253 (262)
T PF14225_consen 212 LKVLLPHVDMRSP-HGADLISPLLRLL----QTDLWMEALEVLDEIV 253 (262)
T ss_pred HHHHhccccCCCC-cchHHHHHHHHHh----CCccHHHHHHHHHHHH
Confidence 9999887765544 5566899999999 3355677888888764
No 308
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.58 E-value=1.9e+02 Score=34.00 Aligned_cols=110 Identities=20% Similarity=0.162 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhH
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKV 455 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~ 455 (683)
+..+..++..+..+....+..-+..+|..++.-.++ .....-..+.+=.+|++.+..+...|+.++.+|..-.. |
T Consensus 204 rla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~--~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~-r-- 278 (865)
T KOG1078|consen 204 RLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKEN--QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS-R-- 278 (865)
T ss_pred HHHHHHHHHHHccccccchhHHHHHHHHHHHHhhhc--ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCH-h--
Confidence 455667777776654443433333334333322222 11112234455566777888899999999888863321 1
Q ss_pred HhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc
Q 037121 456 IVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVK 492 (683)
Q Consensus 456 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~ 492 (683)
++.. ++..+--++++. ....|-.|..+|..++...
T Consensus 279 ~l~p-avs~Lq~flssp-~~~lRfaAvRtLnkvAm~~ 313 (865)
T KOG1078|consen 279 ELAP-AVSVLQLFLSSP-KVALRFAAVRTLNKVAMKH 313 (865)
T ss_pred hcch-HHHHHHHHhcCc-HHHHHHHHHHHHHHHHHhC
Confidence 1111 566666666666 7778889999999998744
No 309
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=73.24 E-value=1.1e+02 Score=30.86 Aligned_cols=138 Identities=25% Similarity=0.213 Sum_probs=81.4
Q ss_pred hHHHHh-hcCCCCHHHHHHHHHHHHhhccCC-chhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHh
Q 037121 421 IPPLLN-LLSSPDQCVQENAVAALLKLSKHT-SGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLI 498 (683)
Q Consensus 421 i~~Lv~-lL~s~d~~~q~~A~~aL~nLs~~~-~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i 498 (683)
+|.|+. +-+..+++.+...+.+|..++.++ .+.. -++..|..+...+ ..+.+.-+...+..+-...+ +.
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~-~~~~~~~~~rLl~~lw~~~~-r~-- 72 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQG-SLELRYVALRLLTLLWKAND-RH-- 72 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCC-chhHHHHHHHHHHHHHHhCc-hH--
Confidence 455555 445589999999999999999887 3222 2355566666666 55554455555555533221 11
Q ss_pred hccCCChHHHHHhh--------hcC--CHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHH
Q 037121 499 GETPKAIPALVKLI--------EEG--TDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAV 568 (683)
Q Consensus 499 ~~~~g~i~~Lv~lL--------~~~--~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~i 568 (683)
-+.+..++..+ .++ ..+.....+.++..+|....+ .-...++.+..+|..+.++.++..++..
T Consensus 73 ---f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 73 ---FPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 02333333320 111 123444556678888876666 2224577777788334567788889999
Q ss_pred HHHhhC
Q 037121 569 LANLAE 574 (683)
Q Consensus 569 L~nLa~ 574 (683)
|..||.
T Consensus 146 l~~Lc~ 151 (234)
T PF12530_consen 146 LAPLCE 151 (234)
T ss_pred HHHHHH
Confidence 999983
No 310
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=73.23 E-value=11 Score=33.93 Aligned_cols=71 Identities=18% Similarity=0.318 Sum_probs=54.6
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHh-----cC---CHHHHHHHHHHHHHHHH
Q 037121 589 PVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTT-----DG---TSQARKKARSLIKILHK 660 (683)
Q Consensus 589 ~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-----~g---~~~~k~~A~~lL~~l~~ 660 (683)
..|.+=|... ++.+|-.|+.+|-.+|..+++.++..+.+...+|..+.+.-. .| ...+|.+|.+++..+-.
T Consensus 41 d~L~kRL~~~-~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 41 EYLLKRLKRS-SPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HHHHHHhcCC-CCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 4666666666 889999999999999999988888888875556777766655 33 34578889999987754
No 311
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.08 E-value=39 Score=42.31 Aligned_cols=263 Identities=16% Similarity=0.152 Sum_probs=127.8
Q ss_pred HHHHHHHhcCCCHHHHHHH-HHHHHHHHhcCchhhH-HHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhcc--CCchhh
Q 037121 379 SRFLARRLFFGTNEEKNKA-AYEIRLLAKSNIFNRS-CIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSK--HTSGKK 454 (683)
Q Consensus 379 i~~Lv~~L~s~~~~~~~~a-~~~L~~La~~~~~~r~-~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~--~~~~r~ 454 (683)
...|...+.+.++..|..+ +|-|...-.-+ ..+. .+........+.++|+.+|.-+|..|..-|+-.-. +...++
T Consensus 820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~-~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~ 898 (1702)
T KOG0915|consen 820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLG-QQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKK 898 (1702)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-cCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHH
Confidence 3455556677788766543 44333222211 1111 11122344778899999999999988777665432 222244
Q ss_pred HHhhcCcHHHHHHHHcCCCCH------HH---------------HHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhh
Q 037121 455 VIVESGGLKVILKVLKSGLSL------EA---------------RQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIE 513 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~~~~~------e~---------------~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~ 513 (683)
.+ ++.|+.-|..|... +. ......=|++|++ .+++ +..|-.++++.+
T Consensus 899 ~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LAS------dl~q-PdLVYKFM~LAn 966 (1702)
T KOG0915|consen 899 SL-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLAS------DLGQ-PDLVYKFMQLAN 966 (1702)
T ss_pred HH-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHh------hcCC-hHHHHHHHHHhh
Confidence 43 44455544433100 00 1111112223322 1222 444555555554
Q ss_pred cCC-HHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhh-HHHHHhcCChHHH
Q 037121 514 EGT-DCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQG-TSTILKTSALPVI 591 (683)
Q Consensus 514 ~~~-~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~-~~~i~~~g~i~~L 591 (683)
+.- -..++-|+-.+..++.....+.+=.-...||.|.+.= .+++..++.....+=..|..++.. ...... ..+.-|
T Consensus 967 h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~-yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eL 1044 (1702)
T KOG0915|consen 967 HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQ-YDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDEL 1044 (1702)
T ss_pred hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhc-cCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHH
Confidence 422 2334444444555544332221111113566666654 678888877444444444444222 111111 223344
Q ss_pred HHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcC----CHHHHHHHHHHHHHHHHhhh
Q 037121 592 IGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDG----TSQARKKARSLIKILHKFIE 663 (683)
Q Consensus 592 v~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g----~~~~k~~A~~lL~~l~~~~~ 663 (683)
+.-|.+. .=++||.++-+|..|-.+.+.+. ...+ +|-++..+... .+.+|+.|-.+.+.+.+..-
T Consensus 1045 L~~lt~k-ewRVReasclAL~dLl~g~~~~~--~~e~----lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1045 LVNLTSK-EWRVREASCLALADLLQGRPFDQ--VKEK----LPELWEAAFRVMDDIKESVREAADKAARALSKLCV 1113 (1702)
T ss_pred HHhccch-hHHHHHHHHHHHHHHHcCCChHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444433 45699999999999988754331 1111 45555544433 44456666667777766544
No 312
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.88 E-value=23 Score=36.84 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhH
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKV 455 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~ 455 (683)
+..+...+..|.+.+|+....++..|+.|+...++...... ..+|..+++-+++....+-..|+.++..+...-.+.
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~-- 163 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS-- 163 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH--
Confidence 44667778899999999999999999999986665433332 245677788888888888888888888876543332
Q ss_pred HhhcCcHHHHHHHHc-CC--CCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHccc
Q 037121 456 IVESGGLKVILKVLK-SG--LSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLL 532 (683)
Q Consensus 456 i~~~g~i~~Lv~lL~-~~--~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 532 (683)
|.+ .++.++..|. .+ .+.=+++.|-.+|..+...-.. .-+++.|...+++.++.++..++....+...
T Consensus 164 i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 164 IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccce
Confidence 222 3444444433 22 1333678888888887654322 2356667777777778887777766555433
No 313
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=72.70 E-value=18 Score=32.89 Aligned_cols=73 Identities=14% Similarity=0.055 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-CchhhHHHHhcCChHHHHhhcCCC--CHHHHHHHHHHHHhhcc
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKS-NIFNRSCIVESGAIPPLLNLLSSP--DQCVQENAVAALLKLSK 448 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s~--d~~~q~~A~~aL~nLs~ 448 (683)
+..+..|-++|.++++.+|..|+..|-.+.+. +......+...+++..|+.+++.. .+.++..++..+.+-+.
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 34677888999999999999999999999985 355667788888999999998773 33488888888877763
No 314
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=72.43 E-value=22 Score=32.31 Aligned_cols=74 Identities=19% Similarity=0.199 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCch-hhHHHHhcCChHHHHhhcCC---CCHHHHHHHHHHHHhhccC
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIF-NRSCIVESGAIPPLLNLLSS---PDQCVQENAVAALLKLSKH 449 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s---~d~~~q~~A~~aL~nLs~~ 449 (683)
+..+..|-++|.++++.+|..|+..|-.+.+.... ....++...++..|+.++.. .+..++..++..+.+.+..
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34677888999999999999999999999985533 56667766777789998875 5889999999999887643
No 315
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=72.30 E-value=80 Score=31.65 Aligned_cols=130 Identities=18% Similarity=0.160 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccC------C-----------ChhHHHHHHHHHHHhhCChhhH
Q 037121 517 DCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASS------N-----------RTELITDSLAVLANLAEDIQGT 579 (683)
Q Consensus 517 ~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~------~-----------~~~~~~~al~iL~nLa~~~~~~ 579 (683)
..-...++..+..|...+++...+.+.+.++.+.+.|... . +..+...=...|+.|++++.|.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 5566778888889998888888878889999988888432 0 1234444567889999999999
Q ss_pred HHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHH
Q 037121 580 STILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILH 659 (683)
Q Consensus 580 ~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~ 659 (683)
..+-+.+....+..+.... +. .....-+|.+|=...+...+. .|-..+.+|+..+|..|...|+.+-
T Consensus 158 ~lLe~~~if~~l~~i~~~~-~~--~~l~klil~~LDY~~~~~~R~----------iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLS-SR--DDLLKLILSSLDYSVDGHPRI----------ILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHCCHHHHHHHHHccC-ch--HHHHHHHHhhCCCCCccHHHH----------HHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 9999999999999988764 22 222222444443222122222 2345788999999999999888653
No 316
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.49 E-value=66 Score=37.27 Aligned_cols=107 Identities=17% Similarity=0.114 Sum_probs=73.8
Q ss_pred cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhh
Q 037121 459 SGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQ 538 (683)
Q Consensus 459 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 538 (683)
.|.+..++.-..+. +..+|-.++.+|.-++........-+- .+....+...+.+..+.++..|+.+|..+-..+.+-
T Consensus 84 ~~~f~hlLRg~Esk-dk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESK-DKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE- 160 (892)
T ss_pred HHHHHHHHhcccCc-chhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC-
Confidence 44455555555555 778899999998888763322222222 355667777777888999999999999997543321
Q ss_pred hHhhcCcHHHHHHHHccCCChhHHHHHHHHHHH
Q 037121 539 KVLDAGTVPLLADILASSNRTELITDSLAVLAN 571 (683)
Q Consensus 539 ~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~n 571 (683)
+..++..++.+++++++++++..|+..+.+
T Consensus 161 ---e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 161 ---ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred ---cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 123567788999889999999987765543
No 317
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.11 E-value=2e+02 Score=34.68 Aligned_cols=131 Identities=13% Similarity=0.079 Sum_probs=80.4
Q ss_pred cCChHHHHhhcCC--------CCHHHHHHHHHHHHhhcc----CCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHH
Q 037121 418 SGAIPPLLNLLSS--------PDQCVQENAVAALLKLSK----HTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATL 485 (683)
Q Consensus 418 ~G~i~~Lv~lL~s--------~d~~~q~~A~~aL~nLs~----~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L 485 (683)
.|.++.++..|.+ .++.-.+-|+.++++|+. .+.-+ .+++.=.+..+.-.+++. ..-.|..|+|++
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~flv~hVfP~f~s~-~g~Lrarac~vl 486 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQMEYFLVNHVFPEFQSP-YGYLRARACWVL 486 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHHHHHhhHhhcCc-hhHHHHHHHHHH
Confidence 4667777887762 356667778888888761 11112 222333444555555665 667899999999
Q ss_pred HHhccCc-hhHHHhhccCCChHHHHHhhh-cCCHHHHHHHHHHHHHcccCCchh-hhHhhc--CcHHHHHHHH
Q 037121 486 FYLTSVK-GYRKLIGETPKAIPALVKLIE-EGTDCGKKNAVVAIFGLLLSQGNH-QKVLDA--GTVPLLADIL 553 (683)
Q Consensus 486 ~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~-~~iv~~--g~v~~Lv~lL 553 (683)
..++..+ ...... ..++....+.|. +.+-.++-.|+-||..+..+.... .++..+ +.++.|+.+.
T Consensus 487 ~~~~~~df~d~~~l---~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ 556 (1010)
T KOG1991|consen 487 SQFSSIDFKDPNNL---SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS 556 (1010)
T ss_pred HHHHhccCCChHHH---HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH
Confidence 9998533 222222 235666667666 555678889999999888876644 333322 3444555555
No 318
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.66 E-value=8.3 Score=37.60 Aligned_cols=44 Identities=9% Similarity=0.283 Sum_probs=36.0
Q ss_pred cCCCCcccC--CCceeccCcccccHHHHHHHHHh-------CCCCCCCCCccc
Q 037121 281 RCPISLELM--TDPVTVSTGQTYDRSSIQKWLKA-------GNMLCPKTGEKL 324 (683)
Q Consensus 281 ~CpIc~~~m--~dPv~~~cght~~r~cI~~w~~~-------~~~~CP~c~~~l 324 (683)
.|-+|...+ .|-+.+.|-|.|-..|+..|-.. ....||.|.+.+
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 588888877 46667899999999999999876 346899998764
No 319
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.29 E-value=2.4 Score=42.85 Aligned_cols=32 Identities=16% Similarity=0.352 Sum_probs=24.9
Q ss_pred CcccccHHHHHHHHHh------------CCCCCCCCCcccCCCC
Q 037121 297 TGQTYDRSSIQKWLKA------------GNMLCPKTGEKLTNTE 328 (683)
Q Consensus 297 cght~~r~cI~~w~~~------------~~~~CP~c~~~l~~~~ 328 (683)
|..-.|++|+-+||.. |..+||.|++.+...+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 3345789999999975 6679999999876543
No 320
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=70.26 E-value=1.9e+02 Score=32.44 Aligned_cols=257 Identities=17% Similarity=0.114 Sum_probs=124.9
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcCch----hhHHHHhcCChHHHHhhcCC-CCHHHHHHHHHHHHhhccCC
Q 037121 378 MSRFLARRLFFG--TNEEKNKAAYEIRLLAKSNIF----NRSCIVESGAIPPLLNLLSS-PDQCVQENAVAALLKLSKHT 450 (683)
Q Consensus 378 ~i~~Lv~~L~s~--~~~~~~~a~~~L~~La~~~~~----~r~~i~~~G~i~~Lv~lL~s-~d~~~q~~A~~aL~nLs~~~ 450 (683)
.++.+++.|-.. +.+.|..+..-+..+.+.... .|..+ ...+.. ..++.-..-+.+|..|+.+.
T Consensus 28 ~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~f---------F~~I~~~~~~~d~~~~l~aL~~LT~~G 98 (464)
T PF11864_consen 28 EIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEF---------FRDISDPSNDDDFDLRLEALIALTDNG 98 (464)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHH---------HHHHhcCCCchhHHHHHHHHHHHHcCC
Confidence 466666666433 567788888878887775533 22222 222222 22222223345555666554
Q ss_pred chhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchh-HHHhhccC----CChHHHHHhhhcC----CHHHHH
Q 037121 451 SGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGY-RKLIGETP----KAIPALVKLIEEG----TDCGKK 521 (683)
Q Consensus 451 ~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~-~~~i~~~~----g~i~~Lv~lL~~~----~~~~~~ 521 (683)
.+= ...+.+..+.|...|.... .+...+-.....-+..... ...+.... ..+..++++++-. ++....
T Consensus 99 rdi-~~~~~~i~~~L~~wl~~~~--~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~ 175 (464)
T PF11864_consen 99 RDI-DFFEYEIGPFLLSWLEPSY--QAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEIS 175 (464)
T ss_pred cCc-hhcccchHHHHHHHHHHHH--HHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 443 2357777888887776431 0000000000000111000 00000012 2344444444432 344555
Q ss_pred HHHHHHHHcccCCch------h----hhHhhcCcHH-----HHHHHHcc-CCChhHHHHHHHHHHHhhCChhhHHHHHhc
Q 037121 522 NAVVAIFGLLLSQGN------H----QKVLDAGTVP-----LLADILAS-SNRTELITDSLAVLANLAEDIQGTSTILKT 585 (683)
Q Consensus 522 ~A~~aL~nLs~~~~n------~----~~iv~~g~v~-----~Lv~lL~~-~~~~~~~~~al~iL~nLa~~~~~~~~i~~~ 585 (683)
..+..++.+|....+ + ..++..|.|| .++..|.. .+.......+-.++.||+++.-|...
T Consensus 176 ~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~---- 251 (464)
T PF11864_consen 176 SLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHSA---- 251 (464)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHHH----
Confidence 555555566544332 1 2334444443 35555521 12346677788888888876544333
Q ss_pred CChHHHHHhhccC-----CChHHHHHHHHHHHHHhcCChHHHHHHHhcCCC--cHHHHHHhHhcCCHHHHHHHHH
Q 037121 586 SALPVIIGLLQTL-----TSRAGKEYCVSILLSLCSNAREEVTASLAKDPS--LMNSLYSLTTDGTSQARKKARS 653 (683)
Q Consensus 586 g~i~~Lv~lL~~~-----~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g--~i~~L~~Ll~~g~~~~k~~A~~ 653 (683)
+..|..+|... .+...-.-|+.++..+..+.+++....+.- .- +++.|...++.+++.+--....
T Consensus 252 --i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~-~~~~vl~sl~~al~~~~~~v~~eIl~ 323 (464)
T PF11864_consen 252 --IRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPF-SPSSVLPSLLNALKSNSPRVDYEILL 323 (464)
T ss_pred --HHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecc-cHHHHHHHHHHHHhCCCCeehHHHHH
Confidence 45777777322 122344567777766665543333333322 22 6788888888776665444433
No 321
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.69 E-value=1.7e+02 Score=35.57 Aligned_cols=255 Identities=17% Similarity=0.178 Sum_probs=139.0
Q ss_pred HHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCC----
Q 037121 398 AYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGL---- 473 (683)
Q Consensus 398 ~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~---- 473 (683)
...|..+-+.+.+|...+.++.++..++.++-+ .+-+..-+.++..|-..+..+ +...-+-.+|..|++|.
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceecc
Confidence 445677888899999999999989988888844 333444455554444333221 11122445677777642
Q ss_pred -------CHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhc----------CCHHHHHHHHHHHH---Hcc--
Q 037121 474 -------SLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEE----------GTDCGKKNAVVAIF---GLL-- 531 (683)
Q Consensus 474 -------~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~----------~~~~~~~~A~~aL~---nLs-- 531 (683)
...+....+++++..............+.+++..|...|.. ++......-...|+ .++
T Consensus 738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc 817 (2799)
T KOG1788|consen 738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC 817 (2799)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence 11345556677777765544444444448888888776642 22223233333333 333
Q ss_pred cCCchhhhH-------------hhcC---------cHHHHHHH-HccCCChhHHHH--HHHHHHHhh------CCh----
Q 037121 532 LSQGNHQKV-------------LDAG---------TVPLLADI-LASSNRTELITD--SLAVLANLA------EDI---- 576 (683)
Q Consensus 532 ~~~~n~~~i-------------v~~g---------~v~~Lv~l-L~~~~~~~~~~~--al~iL~nLa------~~~---- 576 (683)
.+..|+.++ .+.| .|..|.++ ++.-..+.+..+ |++-+-.+- ..|
T Consensus 818 enasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqf 897 (2799)
T KOG1788|consen 818 ENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQF 897 (2799)
T ss_pred hcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCc
Confidence 344454332 2223 12222222 100012222222 222222111 112
Q ss_pred -hhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHh---cCCHHHHHHHH
Q 037121 577 -QGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTT---DGTSQARKKAR 652 (683)
Q Consensus 577 -~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~---~g~~~~k~~A~ 652 (683)
..++.|..+|++..|++.+-.. .++.+-.-+..|-.+.+.++.. +..+ ...|.++.|++++. +|+.-.--.|.
T Consensus 898 npdk~~iynagavRvlirslLln-ypK~qlefl~lleSlaRaspfn-aell-tS~gcvellleIiypflsgsspfLshal 974 (2799)
T KOG1788|consen 898 NPDKQKIYNAGAVRVLIRSLLLN-YPKLQLEFLNLLESLARASPFN-AELL-TSAGCVELLLEIIYPFLSGSSPFLSHAL 974 (2799)
T ss_pred CchHhhhcccchhHHHHHHHHhh-ChHHHHHHHHHHHHHhhcCCCc-hhhh-hcccHHHHHHHHhhhhhcCCchHhhccH
Confidence 2467788899999999844444 7888888888888888876432 3434 34888888888753 45444444555
Q ss_pred HHHHHHHH
Q 037121 653 SLIKILHK 660 (683)
Q Consensus 653 ~lL~~l~~ 660 (683)
.++.+|.-
T Consensus 975 kIvemLga 982 (2799)
T KOG1788|consen 975 KIVEMLGA 982 (2799)
T ss_pred HHHHHHhh
Confidence 55555543
No 322
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.66 E-value=2e+02 Score=36.61 Aligned_cols=181 Identities=20% Similarity=0.188 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHHHHHHhcCchhhHHHHh--cCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHH
Q 037121 390 TNEEKNKAAYEIRLLAKSNIFNRSCIVE--SGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILK 467 (683)
Q Consensus 390 ~~~~~~~a~~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~ 467 (683)
.|..+.-|+.-+..+++.. +..+.- .-.||.|.++=.++|..+|..-..+=..|..++++-..-.-..+++-|+.
T Consensus 970 ~wnSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~ 1046 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLV 1046 (1702)
T ss_pred hhhcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 5677777888888877643 222211 24678888877889999887544444445555444221112335566666
Q ss_pred HHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHH---HHHHHHHHcccCC---ch--hhh
Q 037121 468 VLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKK---NAVVAIFGLLLSQ---GN--HQK 539 (683)
Q Consensus 468 lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~---~A~~aL~nLs~~~---~n--~~~ 539 (683)
-+.+. -..+|+.++-+|..|-...++-...-..+.....+.....+=...+++ .++.+|..||..- .| +.+
T Consensus 1047 ~lt~k-ewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~ 1125 (1702)
T KOG0915|consen 1047 NLTSK-EWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGK 1125 (1702)
T ss_pred hccch-hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHH
Confidence 56555 678999999999999887654433322123444444444332223333 4566666665421 11 222
Q ss_pred HhhcCcHHHHHHH-HccCCChhHHHHHHHHHHHhhCC
Q 037121 540 VLDAGTVPLLADI-LASSNRTELITDSLAVLANLAED 575 (683)
Q Consensus 540 iv~~g~v~~Lv~l-L~~~~~~~~~~~al~iL~nLa~~ 575 (683)
-+-..++|.|+.- + -+.-.+++..++.++..|+.+
T Consensus 1126 ~~l~~iLPfLl~~gi-ms~v~evr~~si~tl~dl~Ks 1161 (1702)
T KOG0915|consen 1126 EALDIILPFLLDEGI-MSKVNEVRRFSIGTLMDLAKS 1161 (1702)
T ss_pred HHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHh
Confidence 2222234444332 1 134578888899999999864
No 323
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=69.33 E-value=1.4e+02 Score=31.22 Aligned_cols=197 Identities=15% Similarity=0.118 Sum_probs=132.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhc-CC-hHHHHhhcCC-CC-HHHHHHHHHHHHhhccCCchh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVES-GA-IPPLLNLLSS-PD-QCVQENAVAALLKLSKHTSGK 453 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~-G~-i~~Lv~lL~s-~d-~~~q~~A~~aL~nLs~~~~~r 453 (683)
....|+..|.....+.+..++....++-+....+|...++- .. ...+-.++.. .+ +++-.++-..|.....++.-.
T Consensus 80 ~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~La 159 (342)
T KOG1566|consen 80 VLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFLA 159 (342)
T ss_pred chHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHHH
Confidence 45778888888888888888877777777665555544432 11 1222233332 32 555555555566666666666
Q ss_pred hHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch-hHHHhh-ccCC-ChH-HHHHhhhcCCHHHHHHHHHHHHH
Q 037121 454 KVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKG-YRKLIG-ETPK-AIP-ALVKLIEEGTDCGKKNAVVAIFG 529 (683)
Q Consensus 454 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~-~~~g-~i~-~Lv~lL~~~~~~~~~~A~~aL~n 529 (683)
+.|....-+......+..+ +-++-..|..+...+...+. ....+. .... ..+ .--.++.+++.-.+..+..+|..
T Consensus 160 kiiL~s~~~~~FF~~vq~p-~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~ 238 (342)
T KOG1566|consen 160 KIILESTNFEKFFLYVQLP-NFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGE 238 (342)
T ss_pred HHHHcchhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHH
Confidence 7777777788888888877 67788888888877755432 111121 1121 223 24557788899999999999999
Q ss_pred cccCCchhhhH----hhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCCh
Q 037121 530 LLLSQGNHQKV----LDAGTVPLLADILASSNRTELITDSLAVLANLAEDI 576 (683)
Q Consensus 530 Ls~~~~n~~~i----v~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~ 576 (683)
+..+..|...+ -+...+..++.+| .+++..++-+|..+.+....++
T Consensus 239 llldr~N~~~M~kYiss~enLKlmM~ll-rdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 239 LLLDRSNSAVMTKYISSPENLKLMMNLL-RDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHhCCCcHHHHHHHhcCHHHHHHHHHHh-hCccccchHHHHHHHHHHhcCC
Confidence 99888875433 3446788899999 7888999999999999887543
No 324
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.32 E-value=99 Score=37.48 Aligned_cols=80 Identities=20% Similarity=0.223 Sum_probs=64.9
Q ss_pred hhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhc---cCCChHHHHHHHHHHH
Q 037121 537 HQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQ---TLTSRAGKEYCVSILL 612 (683)
Q Consensus 537 ~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~---~~~s~~~ke~A~~~L~ 612 (683)
+.++..+|++..|++.+ -...+.++-+-+..|..++. ++.+....-..|.+..|++++. +| +...-.+|.++..
T Consensus 901 k~~iynagavRvlirsl-LlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsg-sspfLshalkIve 978 (2799)
T KOG1788|consen 901 KQKIYNAGAVRVLIRSL-LLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSG-SSPFLSHALKIVE 978 (2799)
T ss_pred HhhhcccchhHHHHHHH-HhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcC-CchHhhccHHHHH
Confidence 67899999999999997 56678899999999999986 7788888888899999888664 35 5566677777777
Q ss_pred HHhcCC
Q 037121 613 SLCSNA 618 (683)
Q Consensus 613 ~L~~~~ 618 (683)
.||...
T Consensus 979 mLgayr 984 (2799)
T KOG1788|consen 979 MLGAYR 984 (2799)
T ss_pred HHhhcc
Confidence 777653
No 325
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=69.24 E-value=2.5 Score=31.96 Aligned_cols=38 Identities=16% Similarity=0.402 Sum_probs=22.6
Q ss_pred CCccCCCCcccCCCceeccCcccccHHHHHHHHHh-CCCCCCCCCc
Q 037121 278 EDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKA-GNMLCPKTGE 322 (683)
Q Consensus 278 ~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~-~~~~CP~c~~ 322 (683)
+.|.||.|.+.+... .+..-+...+... ....||+|..
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchh
Confidence 479999999843321 3334444444433 2457999975
No 326
>PHA03096 p28-like protein; Provisional
Probab=69.10 E-value=3.1 Score=43.08 Aligned_cols=43 Identities=16% Similarity=0.314 Sum_probs=29.8
Q ss_pred ccCCCCcccCCC--------ceeccCcccccHHHHHHHHHhC--CCCCCCCCc
Q 037121 280 FRCPISLELMTD--------PVTVSTGQTYDRSSIQKWLKAG--NMLCPKTGE 322 (683)
Q Consensus 280 f~CpIc~~~m~d--------Pv~~~cght~~r~cI~~w~~~~--~~~CP~c~~ 322 (683)
-.|.||++.-.. -.+..|.|.||-.||..|..+. ..+||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 458888765431 1233699999999999999873 346666654
No 327
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=69.01 E-value=25 Score=32.60 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-chhhHHHHhcCChHHHHhhcCC-CCHHHHHHHHHHHHhhccC
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSN-IFNRSCIVESGAIPPLLNLLSS-PDQCVQENAVAALLKLSKH 449 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s-~d~~~q~~A~~aL~nLs~~ 449 (683)
+..+..|.++|.++++.+|..|+..|-.+++.. ......++..+++..|+.++.. .+..++..++..+...+..
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 346778889999999999999999999999854 3456677778899999999988 8899999999999888643
No 328
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.10 E-value=4.4 Score=44.04 Aligned_cols=69 Identities=19% Similarity=0.346 Sum_probs=42.9
Q ss_pred CccCCCCc-ccCCCce---eccCcccccHHHHHHHHHh-----CCCCCCC--CCcccCCC---CCCCcHHHHHHHHHHHH
Q 037121 279 DFRCPISL-ELMTDPV---TVSTGQTYDRSSIQKWLKA-----GNMLCPK--TGEKLTNT---ELLPNTTLKKLIHQFCA 344 (683)
Q Consensus 279 ~f~CpIc~-~~m~dPv---~~~cght~~r~cI~~w~~~-----~~~~CP~--c~~~l~~~---~l~pn~~l~~~i~~~~~ 344 (683)
...|.||. +.+...- +..|||-||..|+.+++.. ....||- |...++.. .+.++ -++.+.++...
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~-kl~e~~e~~~~ 224 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTP-KLREMWEQRLK 224 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCH-HHHHHHHHHHH
Confidence 57899999 4433212 3469999999999999984 2356775 55555443 23333 45555555554
Q ss_pred hcCc
Q 037121 345 DNGI 348 (683)
Q Consensus 345 ~~~~ 348 (683)
+.-+
T Consensus 225 e~~i 228 (384)
T KOG1812|consen 225 EEVI 228 (384)
T ss_pred HHhh
Confidence 4443
No 329
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=67.90 E-value=35 Score=37.58 Aligned_cols=264 Identities=15% Similarity=0.071 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhcc-----C-CchhhHHhhcCcHHH
Q 037121 391 NEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSK-----H-TSGKKVIVESGGLKV 464 (683)
Q Consensus 391 ~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~-----~-~~~r~~i~~~g~i~~ 464 (683)
...+.++...|..++.+-.-.+..+++-| ..+..-+...++.+++++...|..+-. + ++.-+.=..-|.+-.
T Consensus 269 s~~rle~~qvl~~~a~~~~~~~~~~~~l~--RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~ 346 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFSMTQAYLMELG--RVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT 346 (728)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence 35688888888888876555555555443 334445566789999999999887731 1 111111111121111
Q ss_pred HH------HHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhh
Q 037121 465 IL------KVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQ 538 (683)
Q Consensus 465 Lv------~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 538 (683)
+. ....+..-...+..++.++.++....-+.---++....+-.+...-.+++.-++..|..++.-+..++..+.
T Consensus 347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~ 426 (728)
T KOG4535|consen 347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQ 426 (728)
T ss_pred HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhh
Confidence 11 111111122335556666666654321111111101112222222122223345567777777777776542
Q ss_pred -hHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhh-----CChhhHHHHHhcCC--hHHHHHhh--ccCCChHHHHHHH
Q 037121 539 -KVLDAGTVPLLADILASSNRTELITDSLAVLANLA-----EDIQGTSTILKTSA--LPVIIGLL--QTLTSRAGKEYCV 608 (683)
Q Consensus 539 -~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa-----~~~~~~~~i~~~g~--i~~Lv~lL--~~~~s~~~ke~A~ 608 (683)
...-..+...++..| .+..-..++++...++|+. ..|..+..-....| +..++..- ......+++.+|+
T Consensus 427 d~~fv~~aa~~il~sl-~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~nav 505 (728)
T KOG4535|consen 427 DVIFVADAANAILMSL-EDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAV 505 (728)
T ss_pred hHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Confidence 222234555555566 4445677888999999886 23332222222112 33333311 1122567899999
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--------cHHHHHHhHhcCCHHHHHHHHHHHHHHHHhhh
Q 037121 609 SILLSLCSNAREEVTASLAKDPS--------LMNSLYSLTTDGTSQARKKARSLIKILHKFIE 663 (683)
Q Consensus 609 ~~L~~L~~~~~~~~~~~l~~~~g--------~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~ 663 (683)
.+|.|+..- .+.+++ .| .+..+....-.+...+|=.|+.++.+|-+...
T Consensus 506 raLgnllQv-----lq~i~~-~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a 562 (728)
T KOG4535|consen 506 RALGNLLQF-----LQPIEK-PTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA 562 (728)
T ss_pred HHHhhHHHH-----HHHhhh-ccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcc
Confidence 999887642 222222 11 11112222233455677778888887766544
No 330
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=67.71 E-value=30 Score=31.88 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-CchhhHHHHhcCChHHHHhhcCC------CCHHHHHHHHHHHHhhc
Q 037121 377 LMSRFLARRLFFGTNEEKNKAAYEIRLLAKS-NIFNRSCIVESGAIPPLLNLLSS------PDQCVQENAVAALLKLS 447 (683)
Q Consensus 377 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s------~d~~~q~~A~~aL~nLs 447 (683)
..+..+.++|.++++.++..|+..|-.+.+. +......++..+++.-|++++.. .+..++...+..+..-+
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3667888999999999999999999999873 35566778888899999999953 57899999988887765
No 331
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=67.52 E-value=7.1 Score=31.56 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=22.1
Q ss_pred ccCCCCcccCC-----Cceec--cCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 280 FRCPISLELMT-----DPVTV--STGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 280 f~CpIc~~~m~-----dPv~~--~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
-.|.||++-.- +|.+. .|+--.||.|.+-=.+.|+..||.|+.+..
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 47899987652 44333 588889999999888889999999986654
No 332
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=67.04 E-value=1.9e+02 Score=32.10 Aligned_cols=143 Identities=15% Similarity=0.127 Sum_probs=83.1
Q ss_pred ChHHHHHhhhc-CCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHH-HHHHHhhCC-hhhHH
Q 037121 504 AIPALVKLIEE-GTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSL-AVLANLAED-IQGTS 580 (683)
Q Consensus 504 ~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al-~iL~nLa~~-~~~~~ 580 (683)
.+..+++.|.+ .+...++.|+..|..++.++..+-.=-..-+|..+++.- .+..+++...|. .++..|++. |..
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa-~ds~~~v~~~Aeed~~~~las~~P~~-- 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAA-KDSQDEVMRVAEEDCLTTLASHLPLQ-- 406 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHhhCchh--
Confidence 34556677766 567788899999999998765432211122444555554 333444444333 334444442 221
Q ss_pred HHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHH
Q 037121 581 TILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKIL 658 (683)
Q Consensus 581 ~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l 658 (683)
.|..+..++.+. +...--.++..+-.++..-..+-...+. ..+.|.+++-..+....+|+.|...|=.+
T Consensus 407 ------~I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll--~diaP~~iqay~S~SS~VRKtaVfCLVam 475 (516)
T KOG2956|consen 407 ------CIVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLL--PDIAPCVIQAYDSTSSTVRKTAVFCLVAM 475 (516)
T ss_pred ------HHHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhh--hhhhhHHHHHhcCchHHhhhhHHHhHHHH
Confidence 133444444443 4455556666777777764444333343 56788998888888888888888755433
No 333
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=66.47 E-value=41 Score=28.94 Aligned_cols=93 Identities=18% Similarity=0.244 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHhcCchhhHHHH-hcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHc
Q 037121 392 EEKNKAAYEIRLLAKSNIFNRSCIV-ESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLK 470 (683)
Q Consensus 392 ~~~~~a~~~L~~La~~~~~~r~~i~-~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~ 470 (683)
|++..|+..|..=-.++--.-.-+. +.+.+..|+.....++...++.++..|..|..++.....+.+-|+.+-+-++=.
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~ 81 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP 81 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence 4566666555433333322222233 346667788888888888999999999999999998888889999888655554
Q ss_pred CCCCHHHHHHHHHHH
Q 037121 471 SGLSLEARQIAAATL 485 (683)
Q Consensus 471 ~~~~~e~~~~Aa~~L 485 (683)
.- +...+...-.++
T Consensus 82 ~~-~~~~~~~id~il 95 (98)
T PF14726_consen 82 NV-EPNLQAEIDEIL 95 (98)
T ss_pred cC-CHHHHHHHHHHH
Confidence 43 555555554444
No 334
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=66.13 E-value=6.2 Score=36.68 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=34.2
Q ss_pred CCccCCCCcccCCCceeccCcc-----cccHHHHHHHHHh-CCCCCCCCCcccCC
Q 037121 278 EDFRCPISLELMTDPVTVSTGQ-----TYDRSSIQKWLKA-GNMLCPKTGEKLTN 326 (683)
Q Consensus 278 ~~f~CpIc~~~m~dPv~~~cgh-----t~~r~cI~~w~~~-~~~~CP~c~~~l~~ 326 (683)
.+..|=||.+-.. +..-||.. ..-++|+++|+.. +...||.|+.+...
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 3557889887753 33445543 3468999999987 56789999987643
No 335
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=65.52 E-value=4.1 Score=43.45 Aligned_cols=28 Identities=21% Similarity=0.546 Sum_probs=22.2
Q ss_pred ccHHHHHHHHHh------------CCCCCCCCCcccCCCC
Q 037121 301 YDRSSIQKWLKA------------GNMLCPKTGEKLTNTE 328 (683)
Q Consensus 301 ~~r~cI~~w~~~------------~~~~CP~c~~~l~~~~ 328 (683)
.|.+|+-+||.+ |.-.||+||+++.-.+
T Consensus 315 WC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 315 WCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred HHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 466899999986 4568999999887544
No 336
>PF14353 CpXC: CpXC protein
Probab=65.21 E-value=3.8 Score=37.04 Aligned_cols=47 Identities=23% Similarity=0.312 Sum_probs=31.0
Q ss_pred CccCCCCcccCCCceeccCcccccHHHHHHHHHh--CCCCCCCCCcccC
Q 037121 279 DFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKA--GNMLCPKTGEKLT 325 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~--~~~~CP~c~~~l~ 325 (683)
+.+||-|+..+.-.+-..-.-.....-.++-+.. ...+||.||....
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 3589999999987765443334455555555543 2358999998654
No 337
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=65.18 E-value=24 Score=33.49 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=66.9
Q ss_pred cHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCC-HHHHHHHHHHHHHcccCCchhhh
Q 037121 461 GLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGT-DCGKKNAVVAIFGLLLSQGNHQK 539 (683)
Q Consensus 461 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~~~n~~~ 539 (683)
.+..+..+|.+. +.+.|-.++..+.-++........+......+..|+.+|+..+ ...++.++.+|..|...-.+...
T Consensus 26 l~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSK-SAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 355566777776 6777887777777776654332222222347788888888754 46677888888877765555444
Q ss_pred Hhhc-------CcHHHHHHHHccCCChhHHHHHHHHHHHhh
Q 037121 540 VLDA-------GTVPLLADILASSNRTELITDSLAVLANLA 573 (683)
Q Consensus 540 iv~~-------g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa 573 (683)
+.+. ++++.+++++ + +....+.++.+|..+-
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~-~--~~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLL-Q--DSSCPETALDALATLL 142 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHH-h--ccccHHHHHHHHHHHH
Confidence 4433 3444555555 2 1455566666666654
No 338
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.00 E-value=58 Score=39.84 Aligned_cols=129 Identities=16% Similarity=0.099 Sum_probs=92.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcC-CCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHH
Q 037121 389 GTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLS-SPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILK 467 (683)
Q Consensus 389 ~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~ 467 (683)
++++.|..|.-+|..++--+.+ +. ...+|.|+..+. ++++.++-|++-+++-|+.--+|- + .-.-+.+..
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa~----fc-es~l~llftimeksp~p~IRsN~VvalgDlav~fpnl---i-e~~T~~Ly~ 1005 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISAE----FC-ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL---I-EPWTEHLYR 1005 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhHH----HH-HHHHHHHHHHHhcCCCceeeecchheccchhhhcccc---c-chhhHHHHH
Confidence 4788998888888777654322 22 234689999997 799999999999999998544331 1 112345556
Q ss_pred HHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHccc
Q 037121 468 VLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLL 532 (683)
Q Consensus 468 lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 532 (683)
.|... +..+|++|.-+|.+|-..+- ....|.++.....|.+++.++..-|=.....|+.
T Consensus 1006 rL~D~-~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 1006 RLRDE-SPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred HhcCc-cHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 66667 89999999999999977543 2338999999999999888777666644444433
No 339
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=65.00 E-value=20 Score=33.17 Aligned_cols=72 Identities=10% Similarity=0.114 Sum_probs=60.7
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch--hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Q 037121 419 GAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG--KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTS 490 (683)
Q Consensus 419 G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~--r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~ 490 (683)
.++..|..-|.+.|+.+|..|+.+|-.+..+... ...+...+.+..|+.++....+.+++..+...+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 3556777888899999999999999999988765 67788889999999999984478899988888887764
No 340
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=64.66 E-value=7.4 Score=27.91 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=22.6
Q ss_pred CCCCcccCCCceecc---CcccccHHHHHHHHHhCC-CCCCCC
Q 037121 282 CPISLELMTDPVTVS---TGQTYDRSSIQKWLKAGN-MLCPKT 320 (683)
Q Consensus 282 CpIc~~~m~dPv~~~---cght~~r~cI~~w~~~~~-~~CP~c 320 (683)
|-+|.++...-+.-+ |+-.+-..|+..+|.... ..||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 567777777666543 887888899999998743 369987
No 341
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=64.37 E-value=1.9e+02 Score=31.17 Aligned_cols=93 Identities=19% Similarity=0.259 Sum_probs=62.1
Q ss_pred hHHHHhhcC-CCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhh
Q 037121 421 IPPLLNLLS-SPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIG 499 (683)
Q Consensus 421 i~~Lv~lL~-s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~ 499 (683)
|..++.=|. +....++..++--|..-+.++..+..+...|.+..+++.+...........++++++.+...+.....+.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 345555555 3456778888888877788888899999999999999999654244355555555555544444333333
Q ss_pred ccCCChHHHHHhhh
Q 037121 500 ETPKAIPALVKLIE 513 (683)
Q Consensus 500 ~~~g~i~~Lv~lL~ 513 (683)
...+.+..++.++.
T Consensus 103 ~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 103 LDRDSLRLLLKLLK 116 (361)
T ss_pred hchhHHHHHHHHhc
Confidence 33566777777776
No 342
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=64.28 E-value=21 Score=32.94 Aligned_cols=72 Identities=18% Similarity=0.071 Sum_probs=60.0
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch--hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Q 037121 419 GAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG--KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTS 490 (683)
Q Consensus 419 G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~--r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~ 490 (683)
.++..|.+-|.++++.+|..|+.+|--+..+... ...+...+.+..|+.++....+..++..++..+..-+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 4566788888899999999999999999988654 66777889999999999865578899999888887764
No 343
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=63.53 E-value=51 Score=31.10 Aligned_cols=145 Identities=17% Similarity=0.226 Sum_probs=74.4
Q ss_pred cHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhH
Q 037121 461 GLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKV 540 (683)
Q Consensus 461 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i 540 (683)
.++.|+.+|+++.+...|.++..+|..|=.-|.++-+... +..+.-.. .+.+..... ..+.+....+ .-...
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~--~~~~~~~~--~~~~~~~~~---~~l~~~~~~~-~~ee~ 82 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQ--KSLDSKSS--ENSNDESTD---ISLPMMGISP-SSEEY 82 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccc--ccCCcccc--ccccccchh---hHHhhccCCC-chHHH
Confidence 4677888999887899999999999999777766655332 11110000 011111111 1111111111 12233
Q ss_pred hhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhH-HHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHh
Q 037121 541 LDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGT-STILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLC 615 (683)
Q Consensus 541 v~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~-~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~ 615 (683)
.-..++..|+.+|++..-..-...++.++.++......+ ...+ ...+|.++..++.. .+..+|....-|..|.
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~-~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTC-PDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhC-CHHHHHHHHHHHHHHH
Confidence 333467888888842222222223444444443221111 1112 13578888888865 5677777666555443
No 344
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.19 E-value=13 Score=43.59 Aligned_cols=38 Identities=11% Similarity=0.252 Sum_probs=29.3
Q ss_pred CCCCCccCCCCcccC-CCce-eccCcccccHHHHHHHHHh
Q 037121 275 LNPEDFRCPISLELM-TDPV-TVSTGQTYDRSSIQKWLKA 312 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m-~dPv-~~~cght~~r~cI~~w~~~ 312 (683)
.+...-.|-+|...+ ..|. +.+|||.|-+.||.+....
T Consensus 813 v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~ 852 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLS 852 (911)
T ss_pred EecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHHc
Confidence 344556899998655 5565 4699999999999998765
No 345
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.47 E-value=3.2e+02 Score=32.34 Aligned_cols=197 Identities=14% Similarity=0.130 Sum_probs=127.1
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccC
Q 037121 423 PLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETP 502 (683)
Q Consensus 423 ~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~ 502 (683)
-|..||.++.......|+.-+..+-...++ -...++.+|+..-+. +.+++...---|...+....+-. -
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d-----vS~~Fp~VVKNVask-n~EVKkLVyvYLlrYAEeqpdLA-----L 107 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD-----VSLLFPAVVKNVASK-NIEVKKLVYVYLLRYAEEQPDLA-----L 107 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHhhcCCCce-----e
Confidence 478889887777777777666655444333 123567788877777 88888876655555444322211 1
Q ss_pred CChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHc---cCCChhHHHHHHHHHHHhh-CChhh
Q 037121 503 KAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILA---SSNRTELITDSLAVLANLA-EDIQG 578 (683)
Q Consensus 503 g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~---~~~~~~~~~~al~iL~nLa-~~~~~ 578 (683)
--|..+=+-|.+.++-++..|+.+|..+=. -++ +|.++-.++ .+..+.++..|+.++-.|= -.++.
T Consensus 108 LSIntfQk~L~DpN~LiRasALRvlSsIRv------p~I----aPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~ 177 (968)
T KOG1060|consen 108 LSINTFQKALKDPNQLIRASALRVLSSIRV------PMI----APIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ 177 (968)
T ss_pred eeHHHHHhhhcCCcHHHHHHHHHHHHhcch------hhH----HHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh
Confidence 134556667788888888888888766522 221 222222221 5678899999888888884 46666
Q ss_pred HHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHH
Q 037121 579 TSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARS 653 (683)
Q Consensus 579 ~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~ 653 (683)
+.++.+ .+-++|... ++.+--.|+.+.-.+|-. ..+.+ .+-+..|..++.+-+...|--+..
T Consensus 178 k~qL~e-----~I~~LLaD~-splVvgsAv~AF~evCPe----rldLI---HknyrklC~ll~dvdeWgQvvlI~ 239 (968)
T KOG1060|consen 178 KDQLEE-----VIKKLLADR-SPLVVGSAVMAFEEVCPE----RLDLI---HKNYRKLCRLLPDVDEWGQVVLIN 239 (968)
T ss_pred HHHHHH-----HHHHHhcCC-CCcchhHHHHHHHHhchh----HHHHh---hHHHHHHHhhccchhhhhHHHHHH
Confidence 655443 444477766 888888999888777754 23334 344889999999888888765444
No 346
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=61.41 E-value=2e+02 Score=29.55 Aligned_cols=221 Identities=13% Similarity=0.113 Sum_probs=123.6
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhhccC-CchhhHHhhcCcHHHHHHHHcCC-CCHHHHHHHHHHHHHhccCchhHHHhhc
Q 037121 423 PLLNLLSSPDQCVQENAVAALLKLSKH-TSGKKVIVESGGLKVILKVLKSG-LSLEARQIAAATLFYLTSVKGYRKLIGE 500 (683)
Q Consensus 423 ~Lv~lL~s~d~~~q~~A~~aL~nLs~~-~~~r~~i~~~g~i~~Lv~lL~~~-~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~ 500 (683)
.|=..|.++|..++.+|+..|..+... +.+. ....-+..|+..+.+. .+......++..+..|...........
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~- 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA- 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH-
Confidence 345678899999999999999876432 3221 2222356666655431 144455555666666654322111110
Q ss_pred cCCChHHHHHhh--hcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhh
Q 037121 501 TPKAIPALVKLI--EEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQG 578 (683)
Q Consensus 501 ~~g~i~~Lv~lL--~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~ 578 (683)
...+..+.+-. ++-....+..+...|..|..+......-...+.+..+++.+....||+-...+..++..+...=+
T Consensus 79 -~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~- 156 (262)
T PF14500_consen 79 -VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD- 156 (262)
T ss_pred -HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc-
Confidence 11222222211 12234667778888888776533222223346888899999666789888888888887764211
Q ss_pred HHHHHhcCChHHHHHhhcc--------CC-Ch--HHHHHHHHHHHH-HhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHH
Q 037121 579 TSTILKTSALPVIIGLLQT--------LT-SR--AGKEYCVSILLS-LCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQ 646 (683)
Q Consensus 579 ~~~i~~~g~i~~Lv~lL~~--------~~-s~--~~ke~A~~~L~~-L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~ 646 (683)
. ......+.+.+.. .. +| -.++.-...|.+ |+.. .... .-.+|.|++=+.++.+.
T Consensus 157 ----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~--~~fa------~~~~p~LleKL~s~~~~ 223 (262)
T PF14500_consen 157 ----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST--PLFA------PFAFPLLLEKLDSTSPS 223 (262)
T ss_pred ----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc--HhhH------HHHHHHHHHHHcCCCcH
Confidence 1 1223334333321 10 22 234444444433 3332 2222 22489999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 037121 647 ARKKARSLIKILHKFI 662 (683)
Q Consensus 647 ~k~~A~~lL~~l~~~~ 662 (683)
+|..+...|..+-..+
T Consensus 224 ~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 224 VKLDSLQTLKACIENY 239 (262)
T ss_pred HHHHHHHHHHHHHHHC
Confidence 9999888887665543
No 347
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.37 E-value=3.7e+02 Score=32.64 Aligned_cols=194 Identities=12% Similarity=0.123 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcC-CCCHHHHHHHHHHHHhhccCCch
Q 037121 374 AMKLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLS-SPDQCVQENAVAALLKLSKHTSG 452 (683)
Q Consensus 374 ~~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~d~~~q~~A~~aL~nLs~~~~~ 452 (683)
...+.+..+...+++.---.|.+|++.+..++..+-.+...+. .++....+.|. +.+..++..|+-+|.-+-.+.+.
T Consensus 459 mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~ 536 (1010)
T KOG1991|consen 459 MEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQ 536 (1010)
T ss_pred HHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchh
Confidence 3445566666666776677899999999999954432222222 23455556565 78889999999999887665543
Q ss_pred -hhHHh--hcCcHHHHHHHHcCCCCHHHHHHHHHH-HHHhccC-chhHHHhhccCCChHHHHHhhhc------CCHHHHH
Q 037121 453 -KKVIV--ESGGLKVILKVLKSGLSLEARQIAAAT-LFYLTSV-KGYRKLIGETPKAIPALVKLIEE------GTDCGKK 521 (683)
Q Consensus 453 -r~~i~--~~g~i~~Lv~lL~~~~~~e~~~~Aa~~-L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~------~~~~~~~ 521 (683)
...|- -.+.+..|+++.+.- ..+...+.+.. +...+.. ......+. .......++++.. +++...-
T Consensus 537 ~~e~~~~hvp~~mq~lL~L~ne~-End~Lt~vme~iV~~fseElsPfA~eL~--q~La~~F~k~l~~~~~~~~~~ddk~i 613 (1010)
T KOG1991|consen 537 ADEKVSAHVPPIMQELLKLSNEV-ENDDLTNVMEKIVCKFSEELSPFAVELC--QNLAETFLKVLQTSEDEDESDDDKAI 613 (1010)
T ss_pred hhhhHhhhhhHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHhhchhHHHHH--HHHHHHHHHHHhccCCCCccchHHHH
Confidence 44443 234455555555543 22322222222 1222210 01111111 1233344444442 1123333
Q ss_pred HHHHHHHHccc---CCchhhhHhhc---CcHHHHHHHHccCCChhHHHHHHHHHHHhh
Q 037121 522 NAVVAIFGLLL---SQGNHQKVLDA---GTVPLLADILASSNRTELITDSLAVLANLA 573 (683)
Q Consensus 522 ~A~~aL~nLs~---~~~n~~~iv~~---g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa 573 (683)
.|...|..+.+ .=++...+... -+.+.+-.+| .+.-.++-++++.+...+.
T Consensus 614 aA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL-~~~i~dfyeE~~ei~~~~t 670 (1010)
T KOG1991|consen 614 AASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFIL-KNDITDFYEELLEIVSSLT 670 (1010)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhhhh
Confidence 44444444332 23344433322 2344444445 4445677788888887774
No 348
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=61.22 E-value=32 Score=31.31 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=58.1
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch--hhHHhhcCcHHHHHHHHcC--CCCHHHHHHHHHHHHHhcc
Q 037121 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG--KKVIVESGGLKVILKVLKS--GLSLEARQIAAATLFYLTS 490 (683)
Q Consensus 420 ~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~--r~~i~~~g~i~~Lv~lL~~--~~~~e~~~~Aa~~L~~Ls~ 490 (683)
++..|-+-|.++++.+|..|+.+|--+..+... ...+.....+..++.++.. ..+.+++..+..++...+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 456777888899999999999999999988755 5666676788889999976 4578899999998887764
No 349
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.67 E-value=44 Score=36.95 Aligned_cols=141 Identities=16% Similarity=0.070 Sum_probs=87.7
Q ss_pred cCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChH-
Q 037121 428 LSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIP- 506 (683)
Q Consensus 428 L~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~- 506 (683)
.++++...+.-|+..|+|++.....+..=...-.+..++.-|..+.+.++.-.|+.+|.-+...-.+.... ++.++
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~---~~~l~i 343 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE---SYLLNI 343 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh---hhchhH
Confidence 35577888999999999999875544433344467778887777767888888888887776433222211 23333
Q ss_pred --HHHHhhhcCCHHHHHHHHHHHHHcccCCchhhh--Hhh---cCcHHHHHHHHccCCChhHHHHHHHHHHHhhC
Q 037121 507 --ALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQK--VLD---AGTVPLLADILASSNRTELITDSLAVLANLAE 574 (683)
Q Consensus 507 --~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~--iv~---~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~ 574 (683)
.+..+..+.+++.+..|..++..|+...+...+ +.+ .+..+ |+-.| .++++.+.. |+......|.
T Consensus 344 alrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~-lllhl-~d~~p~va~-ACr~~~~~c~ 415 (533)
T KOG2032|consen 344 ALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAP-LLLHL-QDPNPYVAR-ACRSELRTCY 415 (533)
T ss_pred HHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcccc-ceeee-CCCChHHHH-HHHHHHHhcC
Confidence 445567778888999888888888876554332 222 22333 33334 455665544 4454444444
No 350
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=60.64 E-value=7.6 Score=44.64 Aligned_cols=48 Identities=6% Similarity=-0.085 Sum_probs=36.3
Q ss_pred CCCCCCccCCCCcccCCCce----ecc---CcccccHHHHHHHHHh-----CCCCCCCCC
Q 037121 274 CLNPEDFRCPISLELMTDPV----TVS---TGQTYDRSSIQKWLKA-----GNMLCPKTG 321 (683)
Q Consensus 274 ~~~~~~f~CpIc~~~m~dPv----~~~---cght~~r~cI~~w~~~-----~~~~CP~c~ 321 (683)
...++.-.|++|..-+.+|+ +.+ |+|.+|-.||..|.+. .+..|+.|.
T Consensus 91 eK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~ 150 (1134)
T KOG0825|consen 91 EKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCE 150 (1134)
T ss_pred cccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHH
Confidence 35677889999998888866 334 9999999999999986 233455553
No 351
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=60.04 E-value=27 Score=31.77 Aligned_cols=71 Identities=15% Similarity=0.114 Sum_probs=56.9
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch--hhHHhhcCcHHHHHHHHcCCCCHH-HHHHHHHHHHHhcc
Q 037121 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG--KKVIVESGGLKVILKVLKSGLSLE-ARQIAAATLFYLTS 490 (683)
Q Consensus 420 ~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~--r~~i~~~g~i~~Lv~lL~~~~~~e-~~~~Aa~~L~~Ls~ 490 (683)
++..|-+-|.++++.+|..|+.+|--+..+... ...+...+.+..|+.++....+.. ++..+..++..-+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 456677788899999999999999999988654 667778889999999998754544 88888888776654
No 352
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=59.99 E-value=7.7 Score=29.26 Aligned_cols=29 Identities=24% Similarity=0.571 Sum_probs=23.7
Q ss_pred CccCCCCcccC--CCceec--cCcccccHHHHH
Q 037121 279 DFRCPISLELM--TDPVTV--STGQTYDRSSIQ 307 (683)
Q Consensus 279 ~f~CpIc~~~m--~dPv~~--~cght~~r~cI~ 307 (683)
.-.|++|++.+ .|.+++ .||-.|-|.|..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 35799999999 677765 599999999844
No 353
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=59.55 E-value=42 Score=28.88 Aligned_cols=74 Identities=16% Similarity=0.137 Sum_probs=56.9
Q ss_pred HhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHH
Q 037121 497 LIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLAN 571 (683)
Q Consensus 497 ~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~n 571 (683)
.+....+.+..|+.++...+......++..|..|..++.....+.+-|+++.|-++= ...++......-.++..
T Consensus 24 dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr-~~~~~~~~~~id~il~~ 97 (98)
T PF14726_consen 24 DLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLR-PNVEPNLQAEIDEILDQ 97 (98)
T ss_pred HHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHH-hcCCHHHHHHHHHHHhc
Confidence 333335677888888888888888899999999999999999999999999977775 44556666555555543
No 354
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=59.01 E-value=4.9 Score=38.94 Aligned_cols=46 Identities=26% Similarity=0.483 Sum_probs=36.8
Q ss_pred CccCCCCcccCCCceec-cCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 279 DFRCPISLELMTDPVTV-STGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv~~-~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
-..|.+|..+...-+.- +||-.|-+.|++.++.+ ...||-|+--.+
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~ 227 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWT 227 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccC
Confidence 34799999998766543 68888889999999998 889999975333
No 355
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=58.85 E-value=81 Score=35.76 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhh
Q 037121 375 MKLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKK 454 (683)
Q Consensus 375 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~ 454 (683)
....+..++..+.+.+..++...+..|+.++.-- .--....-.|.+..|..-+.+..+.++..|+.+|..+-....|-+
T Consensus 89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v-~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVV-REIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 3456778888888888889999998888887521 111233446788888888888889999999999988765555522
Q ss_pred HHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc
Q 037121 455 VIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVK 492 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~ 492 (683)
.. ....++.+++++.+.++|..| |.|++.+.
T Consensus 168 n~----~~n~l~~~vqnDPS~EVRr~a---llni~vdn 198 (885)
T COG5218 168 NR----IVNLLKDIVQNDPSDEVRRLA---LLNISVDN 198 (885)
T ss_pred HH----HHHHHHHHHhcCcHHHHHHHH---HHHeeeCC
Confidence 22 234677788887688888754 55665544
No 356
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=58.82 E-value=4.7 Score=29.29 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=21.3
Q ss_pred ccCcccccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 295 VSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 295 ~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
....|..|..|+..-+.. ...||+|+.+++.
T Consensus 17 ~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPt 47 (50)
T PF03854_consen 17 KCSDHYLCLNCLTLMLSR-SDRCPICGKPLPT 47 (50)
T ss_dssp E-SS-EEEHHHHHHT-SS-SSEETTTTEE---
T ss_pred eecchhHHHHHHHHHhcc-ccCCCcccCcCcc
Confidence 345699999999988776 7789999998865
No 357
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=58.76 E-value=1.5e+02 Score=34.75 Aligned_cols=219 Identities=18% Similarity=0.169 Sum_probs=127.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccC---CchhhH
Q 037121 379 SRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKH---TSGKKV 455 (683)
Q Consensus 379 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~---~~~r~~ 455 (683)
..++...+++|....++.|. ..+...++- .....++.|+.+.+.....-...|+.+|..|-++ ++.+.+
T Consensus 198 ~k~l~siiSsGT~~DkitA~---~LlvqesPv-----h~lk~lEtLls~c~KKsk~~a~~~l~~LkdlfI~~LLPdRKLk 269 (988)
T KOG2038|consen 198 AKWLYSIISSGTLTDKITAM---TLLVQESPV-----HNLKSLETLLSSCKKKSKRDALQALPALKDLFINGLLPDRKLK 269 (988)
T ss_pred HHHHHHHHhcCcchhhhHHH---HHhhcccch-----hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCcchhhH
Confidence 45777788888887787776 445554543 3334567888888776655566667777665443 222333
Q ss_pred HhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCc
Q 037121 456 IVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQG 535 (683)
Q Consensus 456 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 535 (683)
.+..-.+..|- +. ...-+...+|.... .-+... ..+|..|..+....=..++..++.++++|..+..
T Consensus 270 ~f~qrp~~~l~----~~-~~~~k~Ll~WyfE~-----~LK~ly---~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kP 336 (988)
T KOG2038|consen 270 YFSQRPLLELT----NK-RLRDKILLMWYFEH-----ELKILY---FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKP 336 (988)
T ss_pred HHhhChhhhcc----cc-ccccceehHHHHHH-----HHHHHH---HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCc
Confidence 33221111111 10 11112233333322 123333 3478888888666667899999999999988765
Q ss_pred hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhh-CChhhHHHHHhcCChHHHHHh-hccCCChHHHHHHHHHHHH
Q 037121 536 NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA-EDIQGTSTILKTSALPVIIGL-LQTLTSRAGKEYCVSILLS 613 (683)
Q Consensus 536 n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa-~~~~~~~~i~~~g~i~~Lv~l-L~~~~s~~~ke~A~~~L~~ 613 (683)
.... ..+..||+-| .++...+...|-..|.+|. .+|.-+..+. ..+..+ ++...+.+.+-+|+..|-.
T Consensus 337 EqE~----~LL~~lVNKl-GDpqnKiaskAsylL~~L~~~HPnMK~Vvi-----~EIer~~FRpn~~~ra~Yyav~fLnQ 406 (988)
T KOG2038|consen 337 EQEN----NLLVLLVNKL-GDPQNKIASKASYLLEGLLAKHPNMKIVVI-----DEIERLAFRPNVSERAHYYAVIFLNQ 406 (988)
T ss_pred HHHH----HHHHHHHHhc-CCcchhhhhhHHHHHHHHHhhCCcceeehH-----HHHHHHHcccCccccceeehhhhhhh
Confidence 4332 2455678888 6777788888888888874 5665444333 344443 3333356677788888765
Q ss_pred HhcC-ChHHHHHHHhc
Q 037121 614 LCSN-AREEVTASLAK 628 (683)
Q Consensus 614 L~~~-~~~~~~~~l~~ 628 (683)
+... ...+++..|+.
T Consensus 407 ~~Lshke~dvAnrLi~ 422 (988)
T KOG2038|consen 407 MKLSHKESDVANRLIS 422 (988)
T ss_pred hHhccchHHHHHHHHH
Confidence 5432 23455555553
No 358
>PRK14707 hypothetical protein; Provisional
Probab=58.51 E-value=5.9e+02 Score=34.05 Aligned_cols=214 Identities=18% Similarity=0.121 Sum_probs=118.8
Q ss_pred HHhhcCC-CCHHHHHHHHHHH-HhhccCCchhhHHhhcCcHHHHHHHHcC-CCCHHHHHHHHHHHHHhccCchhHHHhhc
Q 037121 424 LLNLLSS-PDQCVQENAVAAL-LKLSKHTSGKKVIVESGGLKVILKVLKS-GLSLEARQIAAATLFYLTSVKGYRKLIGE 500 (683)
Q Consensus 424 Lv~lL~s-~d~~~q~~A~~aL-~nLs~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~ 500 (683)
.++-|+. .|..+...|+..| ..|..+.+-+..+ ..-.+...+.-|+. +.+...+..|.+.-..|+.+++-+..+..
T Consensus 294 alNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~ 372 (2710)
T PRK14707 294 ALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEP 372 (2710)
T ss_pred HHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccch
Confidence 3344433 5555555555554 4455544444333 33345556666665 33567777777777888888877776654
Q ss_pred cCCChHHHHHhh-hcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHH-hhCChhh
Q 037121 501 TPKAIPALVKLI-EEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLAN-LAEDIQG 578 (683)
Q Consensus 501 ~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~n-La~~~~~ 578 (683)
.| +...++-+ +-++..+...|+.+|..=...+..-.+-.+...|..+++-|..-++..+...+...|+- |+.+.+-
T Consensus 373 -q~-~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l 450 (2710)
T PRK14707 373 -QG-VSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTEL 450 (2710)
T ss_pred -hH-HHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHH
Confidence 33 44444433 44666777777777775444444444555566677777877666777777777776664 4555555
Q ss_pred HHHHHhcCChHHHHHhhcc-CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCC
Q 037121 579 TSTILKTSALPVIIGLLQT-LTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGT 644 (683)
Q Consensus 579 ~~~i~~~g~i~~Lv~lL~~-~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~ 644 (683)
+..+-- -.|...+..+.. .+++..++.|-.....|... .+..+.+.- .++...|-.|.+-.+
T Consensus 451 ~~~~~p-~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~--~~l~~a~~~-q~~~~~L~aLSK~Pd 513 (2710)
T PRK14707 451 CKALDP-INVTQALDALSKWPDTPICGQTASALAARLAHE--RRLRKALKP-QEVVIALHSLSKWPD 513 (2710)
T ss_pred HhhcCh-HHHHHHHHHhhcCCCChhHHHHHHHHHHHhccc--HHHHhhcCH-HHHHHHHHHhhcCCC
Confidence 554422 224444543433 33445555554444455543 234444432 334445555555444
No 359
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=58.49 E-value=31 Score=29.23 Aligned_cols=70 Identities=19% Similarity=0.096 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccC
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKH 449 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~ 449 (683)
.....+..|.+..+-+|-.++..|+.+..... ....-..+++..++..|+++|.-+=.+|+..|..|+..
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 44566778888888899999999999998655 22223356778888899999999999999999999844
No 360
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=58.31 E-value=83 Score=39.62 Aligned_cols=138 Identities=12% Similarity=0.097 Sum_probs=91.1
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch--hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhcc-CchhH
Q 037121 419 GAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG--KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTS-VKGYR 495 (683)
Q Consensus 419 G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~--r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~ 495 (683)
+.+..++..|..+...++..|+++|.++..-+.. ....+..|+... +... +..+|+.|...+..... ..+..
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R----~~Ds-sasVREAaldLvGrfvl~~~e~~ 890 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGR----LNDS-SASVREAALDLVGRFVLSIPELI 890 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHh----hccc-hhHHHHHHHHHHhhhhhccHHHH
Confidence 5677788888888999999999999999866554 334444444333 3334 67889999988864433 32222
Q ss_pred HHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHc--cCCChhHHHHHHHHHHHh
Q 037121 496 KLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILA--SSNRTELITDSLAVLANL 572 (683)
Q Consensus 496 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~--~~~~~~~~~~al~iL~nL 572 (683)
.. ....+.+-+.+....+++.+...|..+|....+...+++. .+++|. ++.+..+++.+..++.++
T Consensus 891 ~q------yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~-----cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 891 FQ------YYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDM-----CAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HH------HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHH-----HHHHHHHhccchhHHHHHHHHHHHHH
Confidence 22 3345556666667789999999999999988776665542 333332 333333666666666666
No 361
>PLN03205 ATR interacting protein; Provisional
Probab=58.27 E-value=91 Score=33.59 Aligned_cols=123 Identities=14% Similarity=0.086 Sum_probs=71.9
Q ss_pred CCHHHHHHHHHHHHhhc--cCCch-hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch--------------
Q 037121 431 PDQCVQENAVAALLKLS--KHTSG-KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKG-------------- 493 (683)
Q Consensus 431 ~d~~~q~~A~~aL~nLs--~~~~~-r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-------------- 493 (683)
....++..|+.++--+. .+... |+.+....+++.+-.+|+.+.-..++..|...|+-|-..+.
T Consensus 384 TEE~VrLEAvSIMnVIlmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~e~~~ 463 (652)
T PLN03205 384 TEEDVKLEALSIMNIIVMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKNS 463 (652)
T ss_pred chhheeeehhhhhHHhhhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCccccc
Confidence 45566777877775554 33333 88888888999999999986456788888888776643221
Q ss_pred -----hHHHhhccCCC----hHHHHHhhhc-----CCHHHHHHHHHHHHHcccCCch-------hhhHhhcCcHHHHHHH
Q 037121 494 -----YRKLIGETPKA----IPALVKLIEE-----GTDCGKKNAVVAIFGLLLSQGN-------HQKVLDAGTVPLLADI 552 (683)
Q Consensus 494 -----~~~~i~~~~g~----i~~Lv~lL~~-----~~~~~~~~A~~aL~nLs~~~~n-------~~~iv~~g~v~~Lv~l 552 (683)
++........+ +..|.+.+.. .+.+..+.|...|..+++.... .....+.+++-.++++
T Consensus 464 ad~eNd~~~n~st~k~fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfEilv~hkl~~~~NFLmLILqv 543 (652)
T PLN03205 464 SDTENDSEGNFFALEAFGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYELLSNHKLPQDSNFLMLILHL 543 (652)
T ss_pred cccccccccccccHHHHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCceeeecccCCCCccHHHHHHHH
Confidence 11111111122 2333333322 2456778888888888775432 2222333455555555
Q ss_pred H
Q 037121 553 L 553 (683)
Q Consensus 553 L 553 (683)
|
T Consensus 544 L 544 (652)
T PLN03205 544 L 544 (652)
T ss_pred H
Confidence 5
No 362
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=58.12 E-value=2.3e+02 Score=29.14 Aligned_cols=214 Identities=15% Similarity=0.050 Sum_probs=123.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC--CCHHHHHHHHHHHHhhccCCchhhHHhhcC
Q 037121 383 ARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS--PDQCVQENAVAALLKLSKHTSGKKVIVESG 460 (683)
Q Consensus 383 v~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g 460 (683)
=..|.+.++..|.+|+..|......-+... ....-+..|+.++.+ .|......++..|..|.....-. .+
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~-----~~ 76 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFS-----PE 76 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCC-----hh
Confidence 356778888899999988887665443221 222235666666654 56666666677776666332211 11
Q ss_pred cHHHHHHH-HcC----CCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhc-CCHHHHHHHHHHHHHcccCC
Q 037121 461 GLKVILKV-LKS----GLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEE-GTDCGKKNAVVAIFGLLLSQ 534 (683)
Q Consensus 461 ~i~~Lv~l-L~~----~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~ 534 (683)
....++.. .++ ......|..+..+|..|.........-.. .+.+..+++.+.. .||+....+...+..+...-
T Consensus 77 ~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~-~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 77 SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMG-DDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhch-hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 12222222 222 22456688888888888654322221122 4678888888765 57888887777777665543
Q ss_pred chhhhHhhcCcHHHHHHHHc-------c-CC-Ch-hH-H-HHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChH
Q 037121 535 GNHQKVLDAGTVPLLADILA-------S-SN-RT-EL-I-TDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRA 602 (683)
Q Consensus 535 ~n~~~iv~~g~v~~Lv~lL~-------~-~~-~~-~~-~-~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~ 602 (683)
+. ...++-+.+.+. . .+ ++ ++ . +-..+....|++++.- ..-++|.|++=|.++ ++.
T Consensus 156 ~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~-~~~ 223 (262)
T PF14500_consen 156 DI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDST-SPS 223 (262)
T ss_pred cc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCC-CcH
Confidence 31 334455555552 0 11 21 11 1 2222333344554422 224689999988887 888
Q ss_pred HHHHHHHHHHHHhcC
Q 037121 603 GKEYCVSILLSLCSN 617 (683)
Q Consensus 603 ~ke~A~~~L~~L~~~ 617 (683)
+|..++.+|...+..
T Consensus 224 ~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 224 VKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998775543
No 363
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=57.99 E-value=2.8e+02 Score=30.23 Aligned_cols=152 Identities=13% Similarity=0.152 Sum_probs=88.4
Q ss_pred HHHHhhhcCCH-HHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHc---------cCCChhHHHHHHHHHHHhhC-C
Q 037121 507 ALVKLIEEGTD-CGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILA---------SSNRTELITDSLAVLANLAE-D 575 (683)
Q Consensus 507 ~Lv~lL~~~~~-~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~---------~~~~~~~~~~al~iL~nLa~-~ 575 (683)
.++..|.++.+ .-+...+.++.-|+.+...-.-+....-+..|+.+-. ..++..+..+++.+|.|+.. +
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 45555555542 3444566667777766554433333333444444421 11245788999999999985 6
Q ss_pred hhhHHHHHhcCChHHHHHhhccCC----ChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcC--------
Q 037121 576 IQGTSTILKTSALPVIIGLLQTLT----SRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDG-------- 643 (683)
Q Consensus 576 ~~~~~~i~~~g~i~~Lv~lL~~~~----s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g-------- 643 (683)
+..+....+......+.+.+.... ....+-.-+..|.-|+.-. ......++.+.++.+.+..++.+.
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale-~~~Rsql~~~l~Gl~~lt~~led~lgidse~n 207 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALE-TDHRSQLIAELLGLELLTNWLEDKLGIDSEIN 207 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhh-HHHHHHHHHHhcccHHHHHHhhccccCCCCcC
Confidence 677788888777777776443210 1123444555555555443 345555555578888888888653
Q ss_pred ----CHHHHHHHHHHHHHHH
Q 037121 644 ----TSQARKKARSLIKILH 659 (683)
Q Consensus 644 ----~~~~k~~A~~lL~~l~ 659 (683)
++.--..|+++|+.|=
T Consensus 208 ~~~l~pqe~n~a~EaLK~~F 227 (532)
T KOG4464|consen 208 VPPLNPQETNRACEALKVFF 227 (532)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 1233355777776543
No 364
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=57.94 E-value=3.4e+02 Score=31.26 Aligned_cols=78 Identities=12% Similarity=0.139 Sum_probs=51.7
Q ss_pred hhhhHHHHHHHHhhhHHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHcccCcchhhhHHhhH------HHHHHH
Q 037121 51 QRRNAREAIRQIGILLIFFEEIRDRGLNLSDLVVLCFSELHLTFQKVQFLMEDCTREGAKLWVLMKSQ------FIATQF 124 (683)
Q Consensus 51 ~k~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~~Sklyll~~~~------~i~~~f 124 (683)
.+++..+..+++..+.--++||...+. .|.-..-|+.-+..|..+..+.+.+. ..+.++.++ .+...+
T Consensus 180 l~~~~~~~~~eld~L~~ql~ELe~~~l--~~~E~e~L~~e~~~L~n~e~i~~~~~----~~~~~L~~~~~~~~~~~~~~l 253 (563)
T TIGR00634 180 RQQKEQELAQRLDFLQFQLEELEEADL--QPGEDEALEAEQQRLSNLEKLRELSQ----NALAALRGDVDVQEGSLLEGL 253 (563)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhCCc--CCCcHHHHHHHHHHHhCHHHHHHHHH----HHHHHHhCCccccccCHHHHH
Confidence 455567788999999999999987664 34445667777777777777777777 334444443 455565
Q ss_pred HHHHHHHHHH
Q 037121 125 RVLIRAIATA 134 (683)
Q Consensus 125 ~~~~~~l~~~ 134 (683)
..+.+.+...
T Consensus 254 ~~~~~~l~~~ 263 (563)
T TIGR00634 254 GEAQLALASV 263 (563)
T ss_pred HHHHHHHHHh
Confidence 5555555443
No 365
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=57.80 E-value=39 Score=39.10 Aligned_cols=132 Identities=17% Similarity=0.114 Sum_probs=88.5
Q ss_pred HhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhH
Q 037121 416 VESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYR 495 (683)
Q Consensus 416 ~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~ 495 (683)
+...++|.|..-+++.+..+|+.++..+-.++..=+ ...+..-+++.|-.+-....+..++.+++.++..+...- .+
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l-D~ 462 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL-DK 462 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH-HH
Confidence 345677888888889999999999999988875433 444555567777776444447788999999998887211 11
Q ss_pred HHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHH
Q 037121 496 KLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADIL 553 (683)
Q Consensus 496 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL 553 (683)
..+ ..-+.++..-.+..++.++-....+..++....-+...+....++|.++.+.
T Consensus 463 ~~v---~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls 517 (700)
T KOG2137|consen 463 AAV---LDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLS 517 (700)
T ss_pred HHh---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhh
Confidence 122 2234444444455677777766666667766554445566667888888776
No 366
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.11 E-value=35 Score=38.33 Aligned_cols=100 Identities=11% Similarity=0.109 Sum_probs=59.8
Q ss_pred CCChHHHHHh-hhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHH
Q 037121 502 PKAIPALVKL-IEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTS 580 (683)
Q Consensus 502 ~g~i~~Lv~l-L~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~ 580 (683)
.|++..|+.. +.++++.+++.|+.||.-+|..+.+ .++..+++|..+-+..++.-.+-+|+.-|.....+.
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~ 621 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV 621 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence 5677788877 5677889999999999988876544 556667777444456666655556665554321111
Q ss_pred HHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 037121 581 TILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCS 616 (683)
Q Consensus 581 ~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~ 616 (683)
++..|-.++... ..-++..|+-++..+..
T Consensus 622 ------a~diL~~L~~D~-~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 622 ------ATDILEALMYDT-NDFVRQSAMIAVGMILM 650 (926)
T ss_pred ------HHHHHHHHhhCc-HHHHHHHHHHHHHHHHh
Confidence 122222344433 44456555555544443
No 367
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=56.21 E-value=58 Score=30.69 Aligned_cols=142 Identities=11% Similarity=0.168 Sum_probs=74.2
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHH
Q 037121 378 MSRFLARRLFFG-TNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVI 456 (683)
Q Consensus 378 ~i~~Lv~~L~s~-~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i 456 (683)
+...|+..|++. ++..++++++.|+.+-.-+|.-...+... .+.-. -...+..... ..+.+... ...-+..
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~---~~l~~~~~-~~~~ee~ 82 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTD---ISLPMMGI-SPSSEEY 82 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchh---hHHhhccC-CCchHHH
Confidence 556677777665 68899999998888866555433222111 01000 0001111111 11111111 1123444
Q ss_pred hhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC--chhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHc
Q 037121 457 VESGGLKVILKVLKSGLSLEARQIAAATLFYLTSV--KGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGL 530 (683)
Q Consensus 457 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 530 (683)
.-..++..|+.+|++..-..-...+..++.++... ......+ +.++|.++..+++.++..++....-|..|
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L---~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL---PQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH---HHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44557888899988762233344455555555422 2222222 45889999998877777776666555554
No 368
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=56.00 E-value=0.81 Score=36.33 Aligned_cols=41 Identities=20% Similarity=0.413 Sum_probs=21.1
Q ss_pred CccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 279 DFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
|..||.|...|.. ..|+.+|..|-..+.. ...||.|+++|.
T Consensus 1 e~~CP~C~~~L~~----~~~~~~C~~C~~~~~~--~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEW----QGGHYHCEACQKDYKK--EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEE----ETTEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred CCcCCCCCCccEE----eCCEEECcccccccee--cccCCCcccHHH
Confidence 4689999988642 2367777777443221 467999998875
No 369
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=55.75 E-value=3.5e+02 Score=33.91 Aligned_cols=248 Identities=13% Similarity=0.125 Sum_probs=121.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIV 457 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~ 457 (683)
.++.|+..+-+.+|++|.-++-.++.+.+.....- |. ..+...+...|.-++.+
T Consensus 78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~------~~------------~~led~~~rll~v~~Ld-------- 131 (1549)
T KOG0392|consen 78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSL------SY------------ELLEDLLIRLLCVLALD-------- 131 (1549)
T ss_pred HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchh------hH------------HHHHHHHHHHHHHHHHH--------
Confidence 67788888889999999988888888776432110 00 00222222222222211
Q ss_pred hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHH-HHcccCCch
Q 037121 458 ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAI-FGLLLSQGN 536 (683)
Q Consensus 458 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL-~nLs~~~~n 536 (683)
.+=+.........+++.++++|..+..+..... + ...+..+..++....-+.+.-.+..+ ++++...+.
T Consensus 132 ------rf~dfisd~vvapVre~caq~L~~~l~~~~~s~-~---~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~ 201 (1549)
T KOG0392|consen 132 ------RFGDFISDNVVAPVREACAQALGAYLKHMDESL-I---KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDL 201 (1549)
T ss_pred ------HhcccccccchhhhHHHHHHHHHHHHHhhhhHh-h---HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHH
Confidence 111111122234566777777766654332211 1 12344444444443222222111111 122111111
Q ss_pred hhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCCh-h-hHHHHHhcCChHHHHHhhccCC-ChHHHHHHHHHHHH
Q 037121 537 HQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDI-Q-GTSTILKTSALPVIIGLLQTLT-SRAGKEYCVSILLS 613 (683)
Q Consensus 537 ~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~-~-~~~~i~~~g~i~~Lv~lL~~~~-s~~~ke~A~~~L~~ 613 (683)
-..+. .-+++..++-| .+.+.+++..|+..|.-.++.- . ....|. ..+..+..++-... -......-...|..
T Consensus 202 l~~~~-~~vl~~~i~~L-~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~--~lv~~l~~~l~~lddl~~s~~si~~ll~~ 277 (1549)
T KOG0392|consen 202 LFQLL-NLVLDFVIEGL-EDSDDDVRSVAAQFLVPAPSIQVKLMVQKIA--KLVHTLWSFLLELDDLSSSTASIMHLLDE 277 (1549)
T ss_pred HHHHH-HHHHHHHHhhh-hhcchHHHHHHHHHhhhhhHHHHhhhHhHHH--HHHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 11100 12344455556 5667788888887777655422 1 111111 11233333222210 11233444445566
Q ss_pred HhcCCh-HHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhhhhc
Q 037121 614 LCSNAR-EEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFIETC 665 (683)
Q Consensus 614 L~~~~~-~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~~~ 665 (683)
+|.... .+.-.....+.|++|.++..+.+.-..+++.+...+..|.......
T Consensus 278 l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~~qs 330 (1549)
T KOG0392|consen 278 LCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEADDQS 330 (1549)
T ss_pred HhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 777641 1222222223689999999999998899999999888887766433
No 370
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=55.58 E-value=1.7e+02 Score=33.92 Aligned_cols=252 Identities=18% Similarity=0.172 Sum_probs=142.7
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcH
Q 037121 383 ARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGL 462 (683)
Q Consensus 383 v~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i 462 (683)
+..|...+.+++.+=...|..-. +.--..+...-++|.|+..+..++ .-...+..|..+...-+..+ .+.+.+
T Consensus 260 Leel~lks~~eK~~Ff~~L~~~l---~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~i~ 332 (690)
T KOG1243|consen 260 LEELRLKSVEEKQKFFSGLIDRL---DNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVRII 332 (690)
T ss_pred HHhcccCcHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccchh
Confidence 35555556666655444443322 222334555667788888777766 22334444554443322222 677899
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhccCc-hhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHh
Q 037121 463 KVILKVLKSGLSLEARQIAAATLFYLTSVK-GYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVL 541 (683)
Q Consensus 463 ~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv 541 (683)
+.|++++... +..+|- ..|.++-..- .-...+.. ...+|.+..-+.+.++.+++..+..+..|+..=.-+ .+
T Consensus 333 p~l~kLF~~~-Dr~iR~---~LL~~i~~~i~~Lt~~~~~-d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~L 405 (690)
T KOG1243|consen 333 PVLLKLFKSP-DRQIRL---LLLQYIEKYIDHLTKQILN-DQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NL 405 (690)
T ss_pred hhHHHHhcCc-chHHHH---HHHHhHHHHhhhcCHHhhc-chhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hh
Confidence 9999999987 555554 3333332211 12234444 778999999889989999998888887776532211 11
Q ss_pred hcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCC-hHHHHHhhccCCChHHHHHHHHHHHHHhcCChH
Q 037121 542 DAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSA-LPVIIGLLQTLTSRAGKEYCVSILLSLCSNARE 620 (683)
Q Consensus 542 ~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~-i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~ 620 (683)
....+..|-.+- .+.+.+++....-+|+.++..-. ...+.+. +....+-+++. -...|..++.+|+..+..-..
T Consensus 406 n~Ellr~~ar~q-~d~~~~irtntticlgki~~~l~---~~~R~~vL~~aftralkdp-f~paR~a~v~~l~at~~~~~~ 480 (690)
T KOG1243|consen 406 NGELLRYLARLQ-PDEHGGIRTNTTICLGKIAPHLA---ASVRKRVLASAFTRALKDP-FVPARKAGVLALAATQEYFDQ 480 (690)
T ss_pred cHHHHHHHHhhC-ccccCcccccceeeecccccccc---hhhhccccchhhhhhhcCC-CCCchhhhhHHHhhcccccch
Confidence 112222233332 34556666666666666654211 1123344 33444455555 566788888888776665321
Q ss_pred HHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHH
Q 037121 621 EVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKIL 658 (683)
Q Consensus 621 ~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l 658 (683)
..+. .-+.|.+.-+.-+.+.-++..|-..++-+
T Consensus 481 ---~~va--~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 481 ---SEVA--NKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred ---hhhh--hhccccccccccCcccchhhHHHHHHHHH
Confidence 1222 34577777777777777777777666533
No 371
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=55.49 E-value=93 Score=28.46 Aligned_cols=71 Identities=20% Similarity=0.115 Sum_probs=57.0
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch--hhHHhhcCcHHHHHHHHcCCCCHH---HHHHHHHHHHHhcc
Q 037121 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG--KKVIVESGGLKVILKVLKSGLSLE---ARQIAAATLFYLTS 490 (683)
Q Consensus 420 ~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~--r~~i~~~g~i~~Lv~lL~~~~~~e---~~~~Aa~~L~~Ls~ 490 (683)
++..|-+-|.++++.+|..|+.+|--+..+... ...+.....+..|..++.+..... +++.+...+...+.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 456788888999999999999999999988754 677777889999999888754555 78888888776653
No 372
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=54.95 E-value=81 Score=35.42 Aligned_cols=112 Identities=15% Similarity=0.189 Sum_probs=72.7
Q ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHhhC----ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCC-
Q 037121 544 GTVPLLADILASSNRTELITDSLAVLANLAE----DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNA- 618 (683)
Q Consensus 544 g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~----~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~- 618 (683)
++|+.+++.+ ..+.+.+--+.++. +. ..+...++.+.+.|+.|+.+|....++..+.+|..+|..+.+-+
T Consensus 21 ~~v~~llkHI---~~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 21 NFVDNLLKHI---DTPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred cHHHHHHHhc---CCcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 6677777776 34455554444444 22 22345667788889999999975547778888888877664421
Q ss_pred -----------hHHHHHHHhcCCCcHHHHHHhHh--cCCHHHHHHHHHHHHHHHHh
Q 037121 619 -----------REEVTASLAKDPSLMNSLYSLTT--DGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 619 -----------~~~~~~~l~~~~g~i~~L~~Ll~--~g~~~~k~~A~~lL~~l~~~ 661 (683)
+......+.. ...+..|+..+- .++..+--...-++.++|+.
T Consensus 96 n~~~~~~~~igpn~L~r~L~S-~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVS-EETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred ccccccccCCCccHHHHHHhC-hHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 1345556665 567888888766 45555555566678888765
No 373
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.58 E-value=14 Score=29.31 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=28.3
Q ss_pred eeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcH
Q 037121 293 VTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNT 333 (683)
Q Consensus 293 v~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~ 333 (683)
.|-.=-+|||..|-+..+ +..||.|+-.+......|--
T Consensus 23 ~ICtfEcTFCadCae~~l---~g~CPnCGGelv~RP~RPaa 60 (84)
T COG3813 23 RICTFECTFCADCAENRL---HGLCPNCGGELVARPIRPAA 60 (84)
T ss_pred eEEEEeeehhHhHHHHhh---cCcCCCCCchhhcCcCChHH
Confidence 333334699999998766 46899999988777777753
No 374
>PHA02862 5L protein; Provisional
Probab=54.27 E-value=11 Score=34.40 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=31.4
Q ss_pred cCCCCcccCCCceeccCcc-----cccHHHHHHHHHh-CCCCCCCCCcccCC
Q 037121 281 RCPISLELMTDPVTVSTGQ-----TYDRSSIQKWLKA-GNMLCPKTGEKLTN 326 (683)
Q Consensus 281 ~CpIc~~~m~dPv~~~cgh-----t~~r~cI~~w~~~-~~~~CP~c~~~l~~ 326 (683)
.|=||.+.=.+. .-||+. ..-+.|+++|+.. +...||.|+.+...
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 567777665443 345432 4568999999986 56789999987754
No 375
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.95 E-value=11 Score=35.31 Aligned_cols=45 Identities=18% Similarity=0.532 Sum_probs=31.9
Q ss_pred cCCCCcccCCCc-----e--eccCcccccHHHHHHHHHh-----CC-----CCCCCCCcccC
Q 037121 281 RCPISLELMTDP-----V--TVSTGQTYDRSSIQKWLKA-----GN-----MLCPKTGEKLT 325 (683)
Q Consensus 281 ~CpIc~~~m~dP-----v--~~~cght~~r~cI~~w~~~-----~~-----~~CP~c~~~l~ 325 (683)
-|.||.-+--|- + -+.||+.|-.-|+..|++. .. ..||-|..++.
T Consensus 167 ~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 167 ACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred cccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 477776554332 2 2479999999999999986 11 36999987754
No 376
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=53.71 E-value=9.9 Score=39.46 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=37.6
Q ss_pred CCCccCCCCcccCCCceeccCcccccHHHHHHHHHh-CCCCCCCCCcc
Q 037121 277 PEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKA-GNMLCPKTGEK 323 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~-~~~~CP~c~~~ 323 (683)
.++-.|-||-+-+.---.+||||..|-.|--+.-.- ....||.|+..
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 567789999998887778999999999986654432 46889999864
No 377
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=53.53 E-value=8.6 Score=30.01 Aligned_cols=13 Identities=23% Similarity=0.759 Sum_probs=10.0
Q ss_pred cccHHHHHHHHHh
Q 037121 300 TYDRSSIQKWLKA 312 (683)
Q Consensus 300 t~~r~cI~~w~~~ 312 (683)
-|||.|+.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999986
No 378
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=53.22 E-value=1.1e+02 Score=34.64 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=70.1
Q ss_pred CChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC---ChhhH
Q 037121 503 KAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE---DIQGT 579 (683)
Q Consensus 503 g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~---~~~~~ 579 (683)
|.+.-++.-+.+.+..++..++..|.-++..-......+-.|.+..|.+-+ .+..+.++..|+.+|..+-. +++++
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~-~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERL-FDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 556666666677788899999999988887766666777788888888888 66778899999999988753 33332
Q ss_pred HHHHhcCChHHHHHhhccCCChHHHHHHH
Q 037121 580 STILKTSALPVIIGLLQTLTSRAGKEYCV 608 (683)
Q Consensus 580 ~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~ 608 (683)
. ...|+.++++.++.+++..|+
T Consensus 170 ~-------~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 170 I-------VNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred H-------HHHHHHHHhcCcHHHHHHHHH
Confidence 2 234555777655666666543
No 379
>PRK14707 hypothetical protein; Provisional
Probab=52.76 E-value=7.2e+02 Score=33.32 Aligned_cols=258 Identities=16% Similarity=0.092 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC-CCHHHHHHHHHHH-HhhccCCchhhHHhhcCcHHHHHHHHcC
Q 037121 394 KNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS-PDQCVQENAVAAL-LKLSKHTSGKKVIVESGGLKVILKVLKS 471 (683)
Q Consensus 394 ~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~q~~A~~aL-~nLs~~~~~r~~i~~~g~i~~Lv~lL~~ 471 (683)
+..|+..|.....+...-+..+-..| +...++.|+. .+..+..+|+.+| ..++.+..-+..+- .-.+...+.-|+.
T Consensus 223 c~~aa~~la~~l~~~~~l~~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~-~q~vanalNalSK 300 (2710)
T PRK14707 223 CGNAVSALAERLADESRLRNELKPQE-LGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALD-PINVTQALNALSK 300 (2710)
T ss_pred HHHHHHHHHHHHcCcHHHHHhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcC-HHHHHHHHhhhhc
Confidence 44555555443333333333333334 4455555544 6666677777666 44554444444443 2234444455554
Q ss_pred -CCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhh-hcCCHHHHHHHHHHHH-HcccCCchhhhHhhcCcHHH
Q 037121 472 -GLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLI-EEGTDCGKKNAVVAIF-GLLLSQGNHQKVLDAGTVPL 548 (683)
Q Consensus 472 -~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~-nLs~~~~n~~~iv~~g~v~~ 548 (683)
......+..|..+-..|..+.+-+..+-. ..+..+++-| +-.+......|+.+|. .|+.+++-+..+ +.-.|..
T Consensus 301 wpd~~vc~~Aa~~la~rl~~d~~l~~~~~~--~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l-~~q~~a~ 377 (2710)
T PRK14707 301 WADLPVCAEAAIALAERLADDPELCKALNA--RGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDL-EPQGVSS 377 (2710)
T ss_pred CCCchHHHHHHHHHHHHHhccHhhhhccch--HHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhccc-chhHHHH
Confidence 32445566666666777765554433322 2333333333 3355555566666665 555555544443 3446677
Q ss_pred HHHHHccCCChhHHHHHHHHHH-HhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHh
Q 037121 549 LADILASSNRTELITDSLAVLA-NLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLA 627 (683)
Q Consensus 549 Lv~lL~~~~~~~~~~~al~iL~-nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~ 627 (683)
.++-|..-++......|...|+ .|..+++-+..+- ..+|..++.-|..-++......++..|..-..++ .+.++.+.
T Consensus 378 ~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~-~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d-~~l~~~~~ 455 (2710)
T PRK14707 378 VLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLD-PQGVSNALNALAKWPDLPICGQAVSALAGRLAHD-TELCKALD 455 (2710)
T ss_pred HHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcc-hhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhcc-HHHHhhcC
Confidence 7777755666666666666665 5566666666554 3456666665544335555555555555433333 45555554
Q ss_pred cCCCcHHHHHHhHhcCCHHHH-HHHHHHHHHHH
Q 037121 628 KDPSLMNSLYSLTTDGTSQAR-KKARSLIKILH 659 (683)
Q Consensus 628 ~~~g~i~~L~~Ll~~g~~~~k-~~A~~lL~~l~ 659 (683)
- .++...|=.+.+=.+..+. ..|..|...|.
T Consensus 456 p-~~va~~LnalSKWPd~p~c~~aa~~La~~l~ 487 (2710)
T PRK14707 456 P-INVTQALDALSKWPDTPICGQTASALAARLA 487 (2710)
T ss_pred h-HHHHHHHHHhhcCCCChhHHHHHHHHHHHhc
Confidence 3 3444444444444444443 33333433443
No 380
>PRK12495 hypothetical protein; Provisional
Probab=52.70 E-value=11 Score=37.01 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhhcCCccchhchHHHHHHHHhhh
Q 037121 213 SEIKFLEELVALECSDSEEREVPFLSSLVGFMSYC 247 (683)
Q Consensus 213 ~E~~~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~~ 247 (683)
.|.+.|++..+ +++.+..-.+.|..||.++
T Consensus 8 aEREkLREKye-----~d~~~R~~~~~ma~lL~~g 37 (226)
T PRK12495 8 AEREKLREKYE-----QDEQKREATERMSELLLQG 37 (226)
T ss_pred HHHHHHHHHHh-----hhHHHHHHHHHHHHHHHhh
Confidence 45555665543 2233444666777777644
No 381
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=52.44 E-value=14 Score=32.20 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHH
Q 037121 519 GKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELIT 563 (683)
Q Consensus 519 ~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~ 563 (683)
-....+..|..|+..++--..+++.|+++.|+.+| .+.+.++..
T Consensus 62 dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL-~HeN~DIai 105 (108)
T PF08216_consen 62 DLDEEIKKLSVLATAPELYPELVELGAVPSLLGLL-SHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHH-CCCCcceeh
Confidence 34567788999999999899999999999999999 777766543
No 382
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=51.67 E-value=2.1e+02 Score=33.02 Aligned_cols=165 Identities=15% Similarity=0.102 Sum_probs=94.9
Q ss_pred HhhcCCCCHHHHHHHHHHHHhhccCCchhhHHh----hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhc
Q 037121 425 LNLLSSPDQCVQENAVAALLKLSKHTSGKKVIV----ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGE 500 (683)
Q Consensus 425 v~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~----~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~ 500 (683)
+..+-....+.+--|+.+|.-+..+...-..+. ....+..++..+. + .....-.+..+|.|+-.+..++.-+..
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~-~~an~ll~vR~L~N~f~~~~g~~~~~s 627 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-A-DPANQLLVVRCLANLFSNPAGRELFMS 627 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-c-chhHHHHHHHHHHHhccCHHHHHHHHH
Confidence 344445566777777888877776655433332 1224444444444 3 455667788889999887666555544
Q ss_pred cCCChHHHHHhh---hcCC-HHHHHHHHHHHHHccc--CCchhhhHhhcCcHHHHHHHHc----cCCChhHHHHHHHHHH
Q 037121 501 TPKAIPALVKLI---EEGT-DCGKKNAVVAIFGLLL--SQGNHQKVLDAGTVPLLADILA----SSNRTELITDSLAVLA 570 (683)
Q Consensus 501 ~~g~i~~Lv~lL---~~~~-~~~~~~A~~aL~nLs~--~~~n~~~iv~~g~v~~Lv~lL~----~~~~~~~~~~al~iL~ 570 (683)
. ...+...+ ...+ ..++...++...|++. ..++- +.|..+.|...+. ...+-+..-.++.+|+
T Consensus 628 ~---~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~Alg 700 (745)
T KOG0301|consen 628 R---LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALG 700 (745)
T ss_pred H---HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHH
Confidence 2 22222222 2233 4444444444556543 22221 1455555555442 1123345667888999
Q ss_pred HhhCChhhHHHHHhcCChHHHHHhhccC
Q 037121 571 NLAEDIQGTSTILKTSALPVIIGLLQTL 598 (683)
Q Consensus 571 nLa~~~~~~~~i~~~g~i~~Lv~lL~~~ 598 (683)
+|+..+.....+.+.-.+..+++-++..
T Consensus 701 tL~t~~~~~~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 701 TLMTVDASVIQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred hhccccHHHHHHHHhcCHHHHHHHHHHh
Confidence 9998888888888877888888876654
No 383
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=51.43 E-value=6.1 Score=36.61 Aligned_cols=23 Identities=26% Similarity=0.898 Sum_probs=18.2
Q ss_pred cCcccccHHHHHHHHHh----------CCCCCCCCCcc
Q 037121 296 STGQTYDRSSIQKWLKA----------GNMLCPKTGEK 323 (683)
Q Consensus 296 ~cght~~r~cI~~w~~~----------~~~~CP~c~~~ 323 (683)
.+||.|+ .||.+ |.-+||.|+..
T Consensus 9 ~~gH~FE-----gWF~ss~~fd~Q~~~glv~CP~Cgs~ 41 (148)
T PF06676_consen 9 ENGHEFE-----GWFRSSAAFDRQQARGLVSCPVCGST 41 (148)
T ss_pred CCCCccc-----eecCCHHHHHHHHHcCCccCCCCCCC
Confidence 4789996 48876 66799999865
No 384
>PF06497 DUF1098: Protein of unknown function (DUF1098); InterPro: IPR009477 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf102; it is a family of uncharacterised viral proteins.
Probab=51.30 E-value=1.2e+02 Score=25.84 Aligned_cols=70 Identities=21% Similarity=0.117 Sum_probs=44.4
Q ss_pred CCCCCChHHHHHHHHHHHHHHhc-cCCCcchhhhhh-HHHHHHHHhhhHHhHHHHHhcCC--C-CCHHHHHHHHHHH
Q 037121 20 PCEAISPATLLNSLITLANGVCS-NNSKFFATQRRN-AREAIRQIGILLIFFEEIRDRGL--N-LSDLVVLCFSELH 91 (683)
Q Consensus 20 ~~~~~~~~~l~~~l~~~~~~i~~-~~~~~~~~~k~~-~~~l~r~~~ll~~lleel~~~~~--~-~~~~~~~~l~~L~ 91 (683)
++..+.+.+|+++|... +.++. +-.+.- .+|++ ++.|+.+-.-+.-+|+.|.+... . -...++..|+-|.
T Consensus 14 ~~~~~~~~~lL~~Ln~~-~tva~~IlnD~S-~~K~~sl~~Ls~~S~~aK~il~~Ie~~~~~i~l~~~~avnvL~~ls 88 (95)
T PF06497_consen 14 SPDDINAEDLLQSLNEN-QTVARLILNDTS-ENKRNSLKRLSPQSAGAKKILESIEDDDDSIKLNTDDAVNVLRLLS 88 (95)
T ss_pred CCCCCCHHHHHHHHHhc-ccHHHHHHcCCC-HhHHHHHHHHhHhhHHHHHHHHHHhcCCcceeecHHHHHHHHHHHH
Confidence 34457999999999984 33332 222222 34554 58899999999999999987432 1 2334555555444
No 385
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=51.12 E-value=15 Score=32.02 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=20.7
Q ss_pred cccccHHHHHHHHHh--------CCCCCCCCCc
Q 037121 298 GQTYDRSSIQKWLKA--------GNMLCPKTGE 322 (683)
Q Consensus 298 ght~~r~cI~~w~~~--------~~~~CP~c~~ 322 (683)
.-.||..|+..++.+ +.+.||.|+.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 567999999999875 5678999975
No 386
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=50.64 E-value=3.3e+02 Score=28.85 Aligned_cols=105 Identities=19% Similarity=0.201 Sum_probs=59.7
Q ss_pred CCCCCCCCCcccCCCCCChHHHHHHHHHHHHHHhccCCCcchhhhhhHHHHHHHHhhhHHhHHHHHhcCC-CCCHHHHHH
Q 037121 8 SDRRVLSFPAVHPCEAISPATLLNSLITLANGVCSNNSKFFATQRRNAREAIRQIGILLIFFEEIRDRGL-NLSDLVVLC 86 (683)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~i~~~~~~~~~~~k~~~~~l~r~~~ll~~lleel~~~~~-~~~~~~~~~ 86 (683)
.+||..++|-..+.++++..+.+..+ . ..-+..-.+.-.|++|-++|.--..+|+++...-. ..||-...-
T Consensus 38 ~kr~~~~~~~~~~~~~~sl~~~~~A~-------~-~~~P~Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY 109 (325)
T PF08317_consen 38 TKRRSTTAPDSSDEEPPSLEDYVVAG-------Y-CTVPMLELYQFSCRELKKYISEGRQIFEEIEEETYESNPPLFREY 109 (325)
T ss_pred cCCcccCCCCcCCCCCCCHHHHHHHh-------c-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 45665555544445555544444311 1 11122227789999999999999999999964322 224422222
Q ss_pred H---HHHHHHHHHHHHHHHHcccCcchh-hhHHhhHHH
Q 037121 87 F---SELHLTFQKVQFLMEDCTREGAKL-WVLMKSQFI 120 (683)
Q Consensus 87 l---~~L~~~l~~ak~Ll~~c~~~~Skl-yll~~~~~i 120 (683)
+ .+....|+.=-.++..++|-.||- |.-+....+
T Consensus 110 ~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll 147 (325)
T PF08317_consen 110 YTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLL 147 (325)
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 444555655556666666555544 777665443
No 387
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=50.12 E-value=44 Score=39.68 Aligned_cols=147 Identities=14% Similarity=0.146 Sum_probs=96.5
Q ss_pred cCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHh--hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhH
Q 037121 418 SGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIV--ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYR 495 (683)
Q Consensus 418 ~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~--~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~ 495 (683)
...+|.|++...+.+...+.+=+.+|.++-.+-+ +..+. -...+|.|++.|+-. +..+|-.+..++.-+....+.-
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~~-D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSMP-DVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCCC-ccchhhhHhhhhhHHHHhcccc
Confidence 3578889888886666666666777777655322 23333 345688888888877 7777777777776654432222
Q ss_pred HHhhccCCChHHHHHhhhcCC---HHHHHHHHHHHHHccc-CCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHH
Q 037121 496 KLIGETPKAIPALVKLIEEGT---DCGKKNAVVAIFGLLL-SQGNHQKVLDAGTVPLLADILASSNRTELITDSLAV 568 (683)
Q Consensus 496 ~~i~~~~g~i~~Lv~lL~~~~---~~~~~~A~~aL~nLs~-~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~i 568 (683)
..-.. ...+|.|+.+=.+.+ ..++..|+..|..|.. .+.+.-.-.+..++..|.+.| +++..-++.+|+.+
T Consensus 944 ~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~L-dDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 944 QTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKIL-DDKKRLVRKEAVDT 1018 (1030)
T ss_pred chHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhcc-CcHHHHHHHHHHHH
Confidence 11111 447777777755544 5788899999999988 454444444556778888888 66666677777654
No 388
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=49.86 E-value=64 Score=29.56 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=56.5
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcC-CHH---HHHHHHHHHHHHHHhh
Q 037121 588 LPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDG-TSQ---ARKKARSLIKILHKFI 662 (683)
Q Consensus 588 i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g-~~~---~k~~A~~lL~~l~~~~ 662 (683)
+..|.+-|.++ ++.++-.|+.+|-.+..+.+......+.. ...+..|..++.+. +.. +|+++..++.......
T Consensus 44 ~~~l~krl~~~-~~~vq~~aL~lld~lvkNcg~~f~~ev~~-~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 44 ARALRKRLKHG-NPNVQLLALTLLDALVKNCGPRFHREVAS-KEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHTTS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTS-HHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHhH-HHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 45677777777 99999999999999998887777777765 56888999988765 333 7888888877665543
No 389
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=49.58 E-value=61 Score=38.42 Aligned_cols=132 Identities=17% Similarity=0.175 Sum_probs=88.8
Q ss_pred HHHhcCChHHHHhhcCC--------CCHHHHHHHHHHHHhhccCCchhhHHhhc--------CcHHHHHHHHcC---CCC
Q 037121 414 CIVESGAIPPLLNLLSS--------PDQCVQENAVAALLKLSKHTSGKKVIVES--------GGLKVILKVLKS---GLS 474 (683)
Q Consensus 414 ~i~~~G~i~~Lv~lL~s--------~d~~~q~~A~~aL~nLs~~~~~r~~i~~~--------g~i~~Lv~lL~~---~~~ 474 (683)
-+...|++..++.+... .-.++...|+.+|..+..-++.+..++++ .+|..|+..-.. -++
T Consensus 596 nflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~D 675 (1516)
T KOG1832|consen 596 NFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVD 675 (1516)
T ss_pred HHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccC
Confidence 34555666666666543 23567788888888888777777666521 134444433221 237
Q ss_pred HHHHHHHHHHHHHhccCc-hh----------------------------------HHHhhccCCChHHHHHhhhcCC---
Q 037121 475 LEARQIAAATLFYLTSVK-GY----------------------------------RKLIGETPKAIPALVKLIEEGT--- 516 (683)
Q Consensus 475 ~e~~~~Aa~~L~~Ls~~~-~~----------------------------------~~~i~~~~g~i~~Lv~lL~~~~--- 516 (683)
++++..|..++.|+...+ ++ .+..++...+|..|++||+-..
T Consensus 676 pei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t 755 (1516)
T KOG1832|consen 676 PEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPT 755 (1516)
T ss_pred HHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence 889999999999887544 11 1223345779999999998643
Q ss_pred --HHHHHHHHHHHHHcccCCchhhhHhhcCc
Q 037121 517 --DCGKKNAVVAIFGLLLSQGNHQKVLDAGT 545 (683)
Q Consensus 517 --~~~~~~A~~aL~nLs~~~~n~~~iv~~g~ 545 (683)
+.+++.|+.+|..|+.++..+..+.+...
T Consensus 756 ~aD~IRalAc~~L~GLaR~~tVrQIltKLpL 786 (1516)
T KOG1832|consen 756 TADCIRALACRVLLGLARDDTVRQILTKLPL 786 (1516)
T ss_pred cHHHHHHHHHHHHhccccCcHHHHHHHhCcc
Confidence 47888999999999999988766655443
No 390
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=49.29 E-value=78 Score=29.13 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=57.6
Q ss_pred ChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhc------CCHHHHHHHHHHHHHHHH
Q 037121 587 ALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTD------GTSQARKKARSLIKILHK 660 (683)
Q Consensus 587 ~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~------g~~~~k~~A~~lL~~l~~ 660 (683)
++..|.+-|.++ ++.++-.|+.+|-.+..+.+......+.. .+.+.-|+.++.. .+..+|.+...++..-..
T Consensus 39 a~rai~krl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evas-~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSP-QEKEALQALTVLEACMKNCGERFHSEVGK-FRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHHh-HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 455677777887 89999999999988888877777777765 6788889998853 467899999888887665
Q ss_pred hh
Q 037121 661 FI 662 (683)
Q Consensus 661 ~~ 662 (683)
..
T Consensus 117 ~f 118 (139)
T cd03567 117 EL 118 (139)
T ss_pred Hh
Confidence 43
No 391
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=48.64 E-value=59 Score=27.55 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=53.8
Q ss_pred HHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhc-CChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHH
Q 037121 547 PLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKT-SALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTAS 625 (683)
Q Consensus 547 ~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~-g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~ 625 (683)
...+..| .++.+.++..++..|..|..... ..+... +.+..+...|++. ++-+--+|+..|..|+...+..+...
T Consensus 6 ~~al~~L-~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 6 QEALSDL-NDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHc-cCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChHHHHHH
Confidence 4455666 67788899999999999986544 222222 3355666678877 88899999999999998765554444
Q ss_pred H
Q 037121 626 L 626 (683)
Q Consensus 626 l 626 (683)
+
T Consensus 82 L 82 (92)
T PF10363_consen 82 L 82 (92)
T ss_pred H
Confidence 4
No 392
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=48.60 E-value=13 Score=45.09 Aligned_cols=41 Identities=29% Similarity=0.576 Sum_probs=29.7
Q ss_pred CCCCCccCCCCc--ccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCC
Q 037121 275 LNPEDFRCPISL--ELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNT 327 (683)
Q Consensus 275 ~~~~~f~CpIc~--~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~ 327 (683)
++|.++.||-|+ +...|+- -|.-|+- ....||+|+.++..+
T Consensus 910 PL~PHY~Cp~Cky~Ef~~d~s---vgsGfDL---------pdK~CPkCg~pl~kD 952 (1444)
T COG2176 910 PLPPHYLCPECKYSEFIDDGS---VGSGFDL---------PDKDCPKCGTPLKKD 952 (1444)
T ss_pred CCCccccCCCCceeeeecCCC---cCCCCCC---------CCCCCCcCCCccccC
Confidence 678999999996 5666653 2334443 478999999998654
No 393
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=48.57 E-value=3.8e+02 Score=31.08 Aligned_cols=132 Identities=19% Similarity=0.176 Sum_probs=73.4
Q ss_pred hHHHHhhcCC----CCHHHHHHHHHHHHhhc----cCC------chhhHHhhcCcHHHHHHHHcC---CCCHHHHHHHHH
Q 037121 421 IPPLLNLLSS----PDQCVQENAVAALLKLS----KHT------SGKKVIVESGGLKVILKVLKS---GLSLEARQIAAA 483 (683)
Q Consensus 421 i~~Lv~lL~s----~d~~~q~~A~~aL~nLs----~~~------~~r~~i~~~g~i~~Lv~lL~~---~~~~e~~~~Aa~ 483 (683)
+..+..|+.+ .+..+...|+-+++.|. ... ..+...+....++.+...|.. ..+.+.+..+..
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 512 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 3445556654 45667777777777664 221 111222234456666666652 225677778888
Q ss_pred HHHHhccCchhHHHhhccCCChHHHHHhhhcC---CHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccC-CCh
Q 037121 484 TLFYLTSVKGYRKLIGETPKAIPALVKLIEEG---TDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASS-NRT 559 (683)
Q Consensus 484 ~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~-~~~ 559 (683)
+|.|+-. ...++.|...+... +..++..|++||..+...... .+.+.|+.++.+. .+.
T Consensus 513 aLgN~g~-----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~-------~v~~~l~~I~~n~~e~~ 574 (618)
T PF01347_consen 513 ALGNLGH-----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE-------KVREILLPIFMNTTEDP 574 (618)
T ss_dssp HHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH-------HHHHHHHHHHH-TTS-H
T ss_pred HhhccCC-----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH-------HHHHHHHHHhcCCCCCh
Confidence 8888732 45788888888776 467778888888877443222 2345677777332 345
Q ss_pred hHHHHHHHHHH
Q 037121 560 ELITDSLAVLA 570 (683)
Q Consensus 560 ~~~~~al~iL~ 570 (683)
+++..|+.+|.
T Consensus 575 EvRiaA~~~lm 585 (618)
T PF01347_consen 575 EVRIAAYLILM 585 (618)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 66666655443
No 394
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=48.50 E-value=12 Score=27.46 Aligned_cols=29 Identities=24% Similarity=0.582 Sum_probs=17.7
Q ss_pred ceeccCcc-----cccHHHHHHHHHh-CCCCCCCC
Q 037121 292 PVTVSTGQ-----TYDRSSIQKWLKA-GNMLCPKT 320 (683)
Q Consensus 292 Pv~~~cgh-----t~~r~cI~~w~~~-~~~~CP~c 320 (683)
|.+.||+- ..-+.|+.+|+.. +...|+.|
T Consensus 13 ~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 13 PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp -EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 56666542 3457899999986 56778876
No 395
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=48.20 E-value=4e+02 Score=30.65 Aligned_cols=205 Identities=19% Similarity=0.183 Sum_probs=102.4
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHhhccCCch----hhHHhhcC---cHHHHHHHHcCCCCHHHHHHHHHHHHHhccC-c
Q 037121 421 IPPLLNLLSSPDQCVQENAVAALLKLSKHTSG----KKVIVESG---GLKVILKVLKSGLSLEARQIAAATLFYLTSV-K 492 (683)
Q Consensus 421 i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~----r~~i~~~g---~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~ 492 (683)
+-.|+++|+.-+.+-.+....-+.. .. ... .+.+...| ++..+.+.+.++ .... ..|+.++..+... .
T Consensus 313 f~~lv~~lR~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~-~~~~-~ea~~~~~~~~~~~~ 388 (574)
T smart00638 313 FLRLVRLLRTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNK-KITP-LEAAQLLAVLPHTAR 388 (574)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-CCCH-HHHHHHHHHHHHhhh
Confidence 4456777766555544444443333 11 111 33344444 567777777775 2111 1222222222111 1
Q ss_pred hhHHHhhccCCChHHHHHhhhcC----CHHHHHHHHHHHHHccc----CCchhhhHhhcCcHHHHHHHHcc---CCChhH
Q 037121 493 GYRKLIGETPKAIPALVKLIEEG----TDCGKKNAVVAIFGLLL----SQGNHQKVLDAGTVPLLADILAS---SNRTEL 561 (683)
Q Consensus 493 ~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~A~~aL~nLs~----~~~n~~~iv~~g~v~~Lv~lL~~---~~~~~~ 561 (683)
... ...+..+..++.++ ...+...|+.++++|.. +.+.+...+-..+++.|.+.|.. ..+..-
T Consensus 389 ~Pt------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 462 (574)
T smart00638 389 YPT------EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEE 462 (574)
T ss_pred cCC------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchh
Confidence 111 23455666666643 34556666666665543 33333222333466777776632 223344
Q ss_pred HHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhc-c-CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHh
Q 037121 562 ITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQ-T-LTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSL 639 (683)
Q Consensus 562 ~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~-~-~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~L 639 (683)
+..++.+|+|+... ..++.+..++. . ..+...|..|+.+|..++...+..++ +.|+.+
T Consensus 463 ~~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~----------~~l~~i 522 (574)
T smart00638 463 IQLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ----------EVLLPI 522 (574)
T ss_pred eeeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH----------HHHHHH
Confidence 45567777776542 12344555554 1 12567899999999888765434333 344555
Q ss_pred HhcC--CHHHHHHHHHHH
Q 037121 640 TTDG--TSQARKKARSLI 655 (683)
Q Consensus 640 l~~g--~~~~k~~A~~lL 655 (683)
..+. ++.+|-.|..+|
T Consensus 523 ~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 523 YLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HcCCCCChHHHHHHHHHH
Confidence 5554 555665554433
No 396
>PRK10869 recombination and repair protein; Provisional
Probab=47.80 E-value=4.9e+02 Score=29.94 Aligned_cols=76 Identities=11% Similarity=0.074 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHhhhHHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHcccCcchhhhHHhh-H--HHHHHHHHHH
Q 037121 52 RRNAREAIRQIGILLIFFEEIRDRGLNLSDLVVLCFSELHLTFQKVQFLMEDCTREGAKLWVLMKS-Q--FIATQFRVLI 128 (683)
Q Consensus 52 k~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~~Sklyll~~~-~--~i~~~f~~~~ 128 (683)
+++..+..+++..|.--++||...+. .|.-..-|++-+..|..+..+.+.+. ..|-++.+ + .+...+..+.
T Consensus 177 ~~~~~~~~~~~d~l~fql~Ei~~~~l--~~gE~eeL~~e~~~L~n~e~i~~~~~----~~~~~L~~~~~~~~~~~l~~~~ 250 (553)
T PRK10869 177 QQQSQERAARKQLLQYQLKELNEFAP--QPGEFEQIDEEYKRLANSGQLLTTSQ----NALQLLADGEEVNILSQLYSAK 250 (553)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhCCC--CCCcHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCCCcccHHHHHHHHH
Confidence 34556777888889999999987664 34445566667777777777777777 33444443 2 4444555444
Q ss_pred HHHHH
Q 037121 129 RAIAT 133 (683)
Q Consensus 129 ~~l~~ 133 (683)
+.+..
T Consensus 251 ~~l~~ 255 (553)
T PRK10869 251 QLLSE 255 (553)
T ss_pred HHHHH
Confidence 44444
No 397
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=47.51 E-value=13 Score=24.88 Aligned_cols=11 Identities=27% Similarity=0.706 Sum_probs=8.3
Q ss_pred CCCCCCCCCcc
Q 037121 313 GNMLCPKTGEK 323 (683)
Q Consensus 313 ~~~~CP~c~~~ 323 (683)
....||.|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 36789999864
No 398
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=45.80 E-value=96 Score=29.32 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcC--ChHHHHhhcCC-CCHHHHHHHHHHHHhhc
Q 037121 375 MKLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESG--AIPPLLNLLSS-PDQCVQENAVAALLKLS 447 (683)
Q Consensus 375 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G--~i~~Lv~lL~s-~d~~~q~~A~~aL~nLs 447 (683)
....+..+.+.|.+++++.+..++..++..+..++ ...+.+.| .+..|+..|.. ++..+.+.|+.+|..|-
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~ 96 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLF 96 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 34466677788899999999999999998887542 34554443 56678888877 44566777777776664
No 399
>PLN02436 cellulose synthase A
Probab=45.11 E-value=14 Score=44.76 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=35.6
Q ss_pred ccCCCCcccC-----CCceec--cCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 280 FRCPISLELM-----TDPVTV--STGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 280 f~CpIc~~~m-----~dPv~~--~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
-.|.||++-. -+|.+. .||.-.||.|.+-=.++|+..||.|+....
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4899999765 244433 488889999997666779999999988765
No 400
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=44.77 E-value=23 Score=34.10 Aligned_cols=55 Identities=24% Similarity=0.315 Sum_probs=32.9
Q ss_pred CCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCC-CCCcHHHHHHHHHHHHhcC
Q 037121 277 PEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTE-LLPNTTLKKLIHQFCADNG 347 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~-l~pn~~l~~~i~~~~~~~~ 347 (683)
+..|.||.|+.-+ ||.- -+. ..+.||.|+.+|...+ -.--..++..|....+.-+
T Consensus 115 ~~~Y~Cp~C~~ry----------tf~e-----A~~-~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~ 170 (178)
T PRK06266 115 NMFFFCPNCHIRF----------TFDE-----AME-YGFRCPQCGEMLEEYDNSELIKELKEQIKELEEELK 170 (178)
T ss_pred CCEEECCCCCcEE----------eHHH-----Hhh-cCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHhc
Confidence 5688999876333 2321 222 4899999999986532 1112356666666655533
No 401
>PLN02189 cellulose synthase
Probab=44.51 E-value=15 Score=44.41 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=35.6
Q ss_pred ccCCCCcccCC-----Cceec--cCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 280 FRCPISLELMT-----DPVTV--STGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 280 f~CpIc~~~m~-----dPv~~--~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
-.|.||++-.- +|.+. .||--.||.|.+-=.++|+..||.|+....
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 38999998642 44432 488889999997667779999999988765
No 402
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=44.38 E-value=1.7e+02 Score=30.27 Aligned_cols=71 Identities=18% Similarity=0.230 Sum_probs=50.1
Q ss_pred CChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhh--hHhhcCcHHHHHHHHc---c--------CCChhHHHHHHHHH
Q 037121 503 KAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQ--KVLDAGTVPLLADILA---S--------SNRTELITDSLAVL 569 (683)
Q Consensus 503 g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~--~iv~~g~v~~Lv~lL~---~--------~~~~~~~~~al~iL 569 (683)
-++|+++.++.+.++..+..++.+|..+...-.... .+.+.|..+.+-+.|. . .....+...+..+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 478999999999999999999999999987554332 3566676555444432 1 23455677777777
Q ss_pred HHhh
Q 037121 570 ANLA 573 (683)
Q Consensus 570 ~nLa 573 (683)
..|+
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7774
No 403
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.14 E-value=11 Score=41.18 Aligned_cols=66 Identities=24% Similarity=0.427 Sum_probs=46.9
Q ss_pred CCCCCCccCCCC-cccCCCceec--cCcccccHHHHHHHHHhC-CCCCCCCCcccCCCCCCCcHHHHHHHHH
Q 037121 274 CLNPEDFRCPIS-LELMTDPVTV--STGQTYDRSSIQKWLKAG-NMLCPKTGEKLTNTELLPNTTLKKLIHQ 341 (683)
Q Consensus 274 ~~~~~~f~CpIc-~~~m~dPv~~--~cght~~r~cI~~w~~~~-~~~CP~c~~~l~~~~l~pn~~l~~~i~~ 341 (683)
+..+++..||+| .+.|.+-..+ .|+.+||..||.+.+..+ ...|+.|.. ....+.++..++..+..
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~~--~~~~~~~p~~~r~~~n~ 283 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKSMCVCGASNV--LADDLLPPKTLRDTINR 283 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCccccccccccccCCcchhhcc--cccccCCchhhHHHHHH
Confidence 477899999999 8999998876 589999999999988752 234444432 23345666666555543
No 404
>PLN02195 cellulose synthase A
Probab=44.11 E-value=17 Score=43.66 Aligned_cols=45 Identities=13% Similarity=0.270 Sum_probs=35.1
Q ss_pred cCCCCcccC-----CCceec--cCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 281 RCPISLELM-----TDPVTV--STGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 281 ~CpIc~~~m-----~dPv~~--~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
.|.||++-. -+|.+. .||.-.||.|.+-=-++|+..||.|+.+..
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 699998743 456543 588889999997656679999999998766
No 405
>PRK04023 DNA polymerase II large subunit; Validated
Probab=44.10 E-value=19 Score=43.16 Aligned_cols=46 Identities=15% Similarity=0.021 Sum_probs=30.8
Q ss_pred CCccCCCCcccCCCceeccCcc-----cccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 278 EDFRCPISLELMTDPVTVSTGQ-----TYDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 278 ~~f~CpIc~~~m~dPv~~~cgh-----t~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
..+.||-|+........-.||. .||..| .+.. +...||.|+.....
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~~-~~y~CPKCG~El~~ 675 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIEV-EEDECEKCGREPTP 675 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCcC-CCCcCCCCCCCCCc
Confidence 4678999988764333334884 488888 2222 35689999988754
No 406
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.48 E-value=20 Score=40.00 Aligned_cols=36 Identities=17% Similarity=0.347 Sum_probs=30.6
Q ss_pred CCCccCCCCcccCCC-ceeccCcccccHHHHHHHHHh
Q 037121 277 PEDFRCPISLELMTD-PVTVSTGQTYDRSSIQKWLKA 312 (683)
Q Consensus 277 ~~~f~CpIc~~~m~d-Pv~~~cght~~r~cI~~w~~~ 312 (683)
..+..|.||.+-..+ .+.+.|||.||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 557899999988876 445689999999999999876
No 407
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=43.24 E-value=19 Score=31.49 Aligned_cols=42 Identities=29% Similarity=0.345 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHH
Q 037121 395 NKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQE 437 (683)
Q Consensus 395 ~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~ 437 (683)
...+..+..|+. .|+.-..+++.|+++.|+.||.++|.++..
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 345566677776 567788889999999999999998877644
No 408
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=43.04 E-value=75 Score=24.99 Aligned_cols=45 Identities=22% Similarity=0.334 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhhcCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 037121 171 DERAMKRVLSILNYFEKGIEPDSGFMTWVLDYLEIKSWSDCNSEIKFLEE 220 (683)
Q Consensus 171 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~E~~~l~~ 220 (683)
+.++.+-|.+.+. +++.+| ..++|++.+|+.|......-+..|++
T Consensus 8 Q~~vL~~I~~~~~--~~G~~P---t~rEIa~~~g~~S~~tv~~~L~~Le~ 52 (65)
T PF01726_consen 8 QKEVLEFIREYIE--ENGYPP---TVREIAEALGLKSTSTVQRHLKALER 52 (65)
T ss_dssp HHHHHHHHHHHHH--HHSS------HHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HcCCCC---CHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 3444444555444 455555 57889999999999999999988886
No 409
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=42.91 E-value=3.2e+02 Score=31.72 Aligned_cols=205 Identities=20% Similarity=0.210 Sum_probs=99.0
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHhhccCCchh----hHHhhcC---cHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc-
Q 037121 421 IPPLLNLLSSPDQCVQENAVAALLKLSKHTSGK----KVIVESG---GLKVILKVLKSGLSLEARQIAAATLFYLTSVK- 492 (683)
Q Consensus 421 i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r----~~i~~~g---~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~- 492 (683)
+-.|+.+|+.-+.+-......-+..-......| +.+...| ++..+.+++.++ ... -..|+.+|..|....
T Consensus 349 f~~Lv~~lr~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~-~~~-~~ea~~~l~~l~~~~~ 426 (618)
T PF01347_consen 349 FSRLVRLLRTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKSK-KLT-DDEAAQLLASLPFHVR 426 (618)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT--S--HHHHHHHHHHHHHT--
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCC-HHHHHHHHHHHHhhcC
Confidence 445667776655443333322222221011223 2333333 577777777775 222 223555555554432
Q ss_pred hhHHHhhccCCChHHHHHhhhc----CCHHHHHHHHHHHHHccc----CC------chhhhHhhcCcHHHHHHHHc---c
Q 037121 493 GYRKLIGETPKAIPALVKLIEE----GTDCGKKNAVVAIFGLLL----SQ------GNHQKVLDAGTVPLLADILA---S 555 (683)
Q Consensus 493 ~~~~~i~~~~g~i~~Lv~lL~~----~~~~~~~~A~~aL~nLs~----~~------~n~~~iv~~g~v~~Lv~lL~---~ 555 (683)
.... ..+..+..+++. .++.+...|+.++..|.. .. ..+...+...+++.|...|. .
T Consensus 427 ~Pt~------e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 500 (618)
T PF01347_consen 427 RPTE------ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVS 500 (618)
T ss_dssp ---H------HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHH
T ss_pred CCCH------HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhh
Confidence 2222 234445555543 345566667777666643 21 11233344456777777774 2
Q ss_pred CCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccC--CChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcH
Q 037121 556 SNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTL--TSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLM 633 (683)
Q Consensus 556 ~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~--~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i 633 (683)
..+..-+..++.+|+|+... ..++.|..++... .+...|-.|+.+|..+....+..+ .
T Consensus 501 ~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v----------~ 560 (618)
T PF01347_consen 501 RGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKV----------R 560 (618)
T ss_dssp TT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHH----------H
T ss_pred ccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHH----------H
Confidence 34556677788888887531 2456666666543 256688888888887766543332 3
Q ss_pred HHHHHhHhcC--CHHHHHHHHH
Q 037121 634 NSLYSLTTDG--TSQARKKARS 653 (683)
Q Consensus 634 ~~L~~Ll~~g--~~~~k~~A~~ 653 (683)
+.|+.+..+. ++.+|-.|..
T Consensus 561 ~~l~~I~~n~~e~~EvRiaA~~ 582 (618)
T PF01347_consen 561 EILLPIFMNTTEDPEVRIAAYL 582 (618)
T ss_dssp HHHHHHHH-TTS-HHHHHHHHH
T ss_pred HHHHHHhcCCCCChhHHHHHHH
Confidence 4555666665 4445544433
No 410
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.44 E-value=20 Score=37.87 Aligned_cols=48 Identities=23% Similarity=0.366 Sum_probs=36.0
Q ss_pred CccCCCCcccCC---CceeccCcccccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 279 DFRCPISLELMT---DPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 279 ~f~CpIc~~~m~---dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
...|.|+++.|. -|++.|.|++|-...|+.|-...+-.||.+++.+..
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~ 380 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRY 380 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccH
Confidence 466777777773 477888899998888888876644788888776643
No 411
>PRK06424 transcription factor; Provisional
Probab=41.75 E-value=1.1e+02 Score=28.26 Aligned_cols=63 Identities=17% Similarity=0.239 Sum_probs=47.3
Q ss_pred ccchhHHHHHHHHHHHHHHhhhcCChhHHHHHHHH---HHHHhhhcCC-CCCChHHHHHHHHhcCCC
Q 037121 144 DICGEVKELVDLVAKQARKAKFELDKEDERAMKRV---LSILNYFEKG-IEPDSGFMTWVLDYLEIK 206 (683)
Q Consensus 144 ~ls~ev~e~v~l~~~~~~~a~~~~~~~~~~~~~~~---~~~l~~~~~~-~~~~~~~l~~~~~~l~l~ 206 (683)
|+.++..+.++.+...++.++.....+.+++++.+ .+.+...+++ ..|+.+.+.+++..||++
T Consensus 73 d~~~~~~~~~~~~g~~Ir~lRe~~GLSQ~eLA~~iGvs~stIskiE~G~~~Ps~~~l~kLa~~Lgvs 139 (144)
T PRK06424 73 KASDEDLDIVEDYAELVKNARERLSMSQADLAAKIFERKNVIASIERGDLLPDIKTARKLEKILGIT 139 (144)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCCC
Confidence 45556666667777778877788888888998877 2455555554 678999999999999986
No 412
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=41.10 E-value=17 Score=44.03 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=35.3
Q ss_pred ccCCCCcccC-----CCceec--cCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 280 FRCPISLELM-----TDPVTV--STGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 280 f~CpIc~~~m-----~dPv~~--~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
-.|.||++-. -+|.+. .||--.||.|.+-=.++|+..||.|+....
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 3899998764 345443 588889999997666679999999987654
No 413
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=40.29 E-value=21 Score=33.66 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=22.9
Q ss_pred CCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCC
Q 037121 277 PEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNT 327 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~ 327 (683)
+..|.||.|..-+ ||. ..+. ..++||.|+.++...
T Consensus 107 ~~~Y~Cp~c~~r~----------tf~-----eA~~-~~F~Cp~Cg~~L~~~ 141 (158)
T TIGR00373 107 NMFFICPNMCVRF----------TFN-----EAME-LNFTCPRCGAMLDYL 141 (158)
T ss_pred CCeEECCCCCcEe----------eHH-----HHHH-cCCcCCCCCCEeeec
Confidence 5688999876332 222 2222 379999999988654
No 414
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=40.28 E-value=23 Score=39.04 Aligned_cols=178 Identities=20% Similarity=0.204 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCC
Q 037121 478 RQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSN 557 (683)
Q Consensus 478 ~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~ 557 (683)
...-+.++..-..++.++..+|....+|-.+.....++ ..+.+.++.++..++.....-.+++....+.+--..+ ...
T Consensus 222 ~~~~~~~fv~k~e~e~n~~~iGk~~~~I~~~~~~ieS~-~hvVek~~~~~~s~~~~~~~t~ql~k~~l~~pTe~v~-~l~ 299 (763)
T KOG4231|consen 222 HPLLASTFVKKMEDEGNRSVIGKDENAIRQLISMIESD-QHVVEKACVALSSLARDVGVTMQLMKCDLMKPTETVL-KLS 299 (763)
T ss_pred chhHHHHHHHHhhCcccceeecccchhhhhhccccccc-chhhcccccccccHHHHHHHHHHHHHHHhcCcchhhh-hhc
Confidence 33445666777777888888887566677777766553 3344444443333332221111111111000000000 000
Q ss_pred ChhHHHHHHHHHHHhhCChh-hHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHH
Q 037121 558 RTELITDSLAVLANLAEDIQ-GTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSL 636 (683)
Q Consensus 558 ~~~~~~~al~iL~nLa~~~~-~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L 636 (683)
.+++ ...+..+..++...+ .-+... +..+..+.+.+..+..+..++.|..++.+++.+... ...+.-.+.+-..+
T Consensus 300 ~~~I-~~l~~~v~~~~~~s~s~~Qe~~-~K~~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~--r~~~~tsp~l~~~~ 375 (763)
T KOG4231|consen 300 SPDI-ISLLQVVVTLAFVSDSVSQEML-TKDMLKALKSLCAHKNPELQRQALLAVGNLAFCLEN--RRILITSPSLRELL 375 (763)
T ss_pred cccH-hhHHHHHhcCCchhhhHHhhhh-HHHHHHHHHHHhcccChHHHHHHHHHHHHheecccc--cccccCChHHHHHH
Confidence 1111 111122222221111 111111 112334444444444788999999999988876421 22333334456667
Q ss_pred HHhHhcCCHHHHHHHHHHHHHHHHh
Q 037121 637 YSLTTDGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 637 ~~Ll~~g~~~~k~~A~~lL~~l~~~ 661 (683)
++++....++.-+.|..++..+-+.
T Consensus 376 ~~~i~~~~~~~~~~~~~a~~~~~~~ 400 (763)
T KOG4231|consen 376 MRLIVTPEPRVNKAAARALAILGEN 400 (763)
T ss_pred HHHhcccccccchhhhHHHHHhhhh
Confidence 7777777777666666666655553
No 415
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=40.21 E-value=15 Score=37.57 Aligned_cols=48 Identities=17% Similarity=0.364 Sum_probs=34.7
Q ss_pred CccCCCCcccCC-Cc-e-eccCcccccHHHHHHHHHh----------------------CCCCCCCCCcccCC
Q 037121 279 DFRCPISLELMT-DP-V-TVSTGQTYDRSSIQKWLKA----------------------GNMLCPKTGEKLTN 326 (683)
Q Consensus 279 ~f~CpIc~~~m~-dP-v-~~~cght~~r~cI~~w~~~----------------------~~~~CP~c~~~l~~ 326 (683)
.-.|.||+-=|. .| . .++|.|.|--.|+.+++.. -...||+|+..+..
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 557999986664 44 3 3589999988999888765 11359999887653
No 416
>PF04641 Rtf2: Rtf2 RING-finger
Probab=40.20 E-value=35 Score=35.01 Aligned_cols=37 Identities=22% Similarity=0.475 Sum_probs=32.5
Q ss_pred CCCccCCCCcccCCCceec-cCcccccHHHHHHHHHhC
Q 037121 277 PEDFRCPISLELMTDPVTV-STGQTYDRSSIQKWLKAG 313 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv~~-~cght~~r~cI~~w~~~~ 313 (683)
-.-+.|+|+++.+.+||+. .-|+-|....|.+|+...
T Consensus 32 ~~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 32 ARWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred CCcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 3467999999999999864 689999999999999874
No 417
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=40.19 E-value=15 Score=37.84 Aligned_cols=25 Identities=16% Similarity=0.553 Sum_probs=17.6
Q ss_pred CccCCCCcccCC--C-ceeccCcccccH
Q 037121 279 DFRCPISLELMT--D-PVTVSTGQTYDR 303 (683)
Q Consensus 279 ~f~CpIc~~~m~--d-Pv~~~cght~~r 303 (683)
.|.||+|...|. + ...-+.||+|+.
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~ 29 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDC 29 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcc
Confidence 489999999884 2 233356788865
No 418
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.64 E-value=17 Score=36.91 Aligned_cols=45 Identities=18% Similarity=0.379 Sum_probs=33.4
Q ss_pred CCCCCccCCCCcccCCCceecc----CcccccHHHHHHHHHh----CCCCCCC
Q 037121 275 LNPEDFRCPISLELMTDPVTVS----TGQTYDRSSIQKWLKA----GNMLCPK 319 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~----cght~~r~cI~~w~~~----~~~~CP~ 319 (683)
.....++|-+|.|-+.|--.+- ..|.||-.|-.+.++. |...||-
T Consensus 264 A~~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 264 APSAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred CCCCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 3445699999999999987654 4799998887777765 4445663
No 419
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=39.62 E-value=5.8e+02 Score=28.50 Aligned_cols=109 Identities=16% Similarity=0.066 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHh----hcCC-CCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHH
Q 037121 391 NEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLN----LLSS-PDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVI 465 (683)
Q Consensus 391 ~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~----lL~s-~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~L 465 (683)
...+.+|++.|.......+- ..|+.+-. ++.. ...+++..+...|..+......+..+...-.+..+
T Consensus 4 l~~R~~a~~~l~~~i~~~~~--------~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I 75 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPL--------SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDI 75 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCc--------hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 34566666666554432211 22333322 3333 35678888888888888766654333333333333
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhh
Q 037121 466 LKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIE 513 (683)
Q Consensus 466 v~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~ 513 (683)
......+.-..-..+|..|+.+...- -+-..+..|.|..++.
T Consensus 76 ----~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~ 117 (464)
T PF11864_consen 76 ----SDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLE 117 (464)
T ss_pred ----hcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHH
Confidence 33224444455666777777644333 2223678888888775
No 420
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=39.53 E-value=2.2e+02 Score=33.17 Aligned_cols=131 Identities=18% Similarity=0.085 Sum_probs=86.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhh-cCCCCHHHHHHHHHHHHhhccCCchhhHH
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNL-LSSPDQCVQENAVAALLKLSKHTSGKKVI 456 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~l-L~s~d~~~q~~A~~aL~nLs~~~~~r~~i 456 (683)
.++.|...++..+...|..++..+..+++.-+ ..++..-++|.|-++ +.+.+..++.+++.++..+. +..+..
T Consensus 390 IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~lD~~ 463 (700)
T KOG2137|consen 390 ILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRLDKA 463 (700)
T ss_pred HHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHHHHH
Confidence 56777778888889999999999999987544 345556667777664 34588999999999999998 222221
Q ss_pred hhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCC
Q 037121 457 VESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGT 516 (683)
Q Consensus 457 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~ 516 (683)
.-..-+.++....+.. ++...-....+..++.....+...... ..++|.++.+...+.
T Consensus 464 ~v~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g~ev~~-~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 464 AVLDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSGVEVMA-ENVLPLLIPLSVAPS 521 (700)
T ss_pred HhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccceeeeh-hhhhhhhhhhhhccc
Confidence 1112244444444444 566666666666666665555322222 568888888766543
No 421
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=39.34 E-value=5.6e+02 Score=31.47 Aligned_cols=144 Identities=16% Similarity=0.176 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHcccCcchhhhHHhhHHHHHHHHHHHHHHHHHhhcCCCCCc--ccchhHHHHHHHHHHHHH---Hhhh
Q 037121 91 HLTFQKVQFLMEDCTREGAKLWVLMKSQFIATQFRVLIRAIATALDVFPLDTV--DICGEVKELVDLVAKQAR---KAKF 165 (683)
Q Consensus 91 ~~~l~~ak~Ll~~c~~~~Sklyll~~~~~i~~~f~~~~~~l~~~L~~lp~~~l--~ls~ev~e~v~l~~~~~~---~a~~ 165 (683)
...|+..|.+++.=- -|--+++|+.-. .++.+...+ ++|..||.+.- .||.+.++||..+++++. ||--
T Consensus 1014 K~QMDaIKqmIekKv----~L~~L~qCqdAL-eKqnIa~AL-~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQRAV~ 1087 (1439)
T PF12252_consen 1014 KAQMDAIKQMIEKKV----VLQALTQCQDAL-EKQNIAGAL-QALNNIPSDKEMSKISSELREQIQSVKQDLESLQRAVV 1087 (1439)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHH-HhhhHHHHH-HHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 445666777776522 223455565533 334455444 45777875531 199999999999887744 3332
Q ss_pred cCChh-HHHHHHHHHHHH-------hhhcCCCCCChHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhcCCccchhchH
Q 037121 166 ELDKE-DERAMKRVLSIL-------NYFEKGIEPDSGFMTWVLDYLEIKSWSDCNSEIKFLEELVALECSDSEEREVPFL 237 (683)
Q Consensus 166 ~~~~~-~~~~~~~~~~~l-------~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~E~~~l~~~~~~~~~~~~~~~~~~~ 237 (683)
..-.. .+.....-..++ ..+++....|.+..++.... ...|++|+..|++|+.+-+.+.++-+-.-+
T Consensus 1088 TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~ia~-----lnnlqqElklLRnEK~Rmh~~~dkVDFSDI 1162 (1439)
T PF12252_consen 1088 TPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKAIAN-----LNNLQQELKLLRNEKIRMHSGTDKVDFSDI 1162 (1439)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH-----HHHHHHHHHHHHhHHHhhccCCCcccHHHH
Confidence 22222 222222222222 22244444555555544433 457889999999999766665544444455
Q ss_pred HHHHHHHh
Q 037121 238 SSLVGFMS 245 (683)
Q Consensus 238 ~~l~~ll~ 245 (683)
+.|-.-|.
T Consensus 1163 EkLE~qLq 1170 (1439)
T PF12252_consen 1163 EKLEKQLQ 1170 (1439)
T ss_pred HHHHHHHH
Confidence 55555554
No 422
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=39.25 E-value=15 Score=27.39 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=11.7
Q ss_pred CCCCCccCCCCcc
Q 037121 275 LNPEDFRCPISLE 287 (683)
Q Consensus 275 ~~~~~f~CpIc~~ 287 (683)
++|++|.||+|..
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 7899999999974
No 423
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.43 E-value=2e+02 Score=30.17 Aligned_cols=135 Identities=16% Similarity=0.190 Sum_probs=78.2
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHcccCCc-hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHH
Q 037121 505 IPALVKLIEEGTDCGKKNAVVAIFGLLLSQG-NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTIL 583 (683)
Q Consensus 505 i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~ 583 (683)
+...+..|.+.+-..+-+++..+..|+..+. ....+.. ..+-.+++-+ .+....+...|+.+++-+.+.=. ..+.
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvksl-KNlRS~VsraA~~t~~difs~ln--~~i~ 165 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSL-KNLRSAVSRAACMTLADIFSSLN--NSID 165 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 3334445555566666677777777776432 2222221 2445556666 55677888889888888865211 1111
Q ss_pred hcCChHHHHH-hhccC-C-ChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHH
Q 037121 584 KTSALPVIIG-LLQTL-T-SRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSL 654 (683)
Q Consensus 584 ~~g~i~~Lv~-lL~~~-~-s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~l 654 (683)
+ .+..++. ++..+ . ..-+++.|-.+|..|..+.... . +++.|...+++-.++++.+|+..
T Consensus 166 ~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~--~-------~L~~L~~~~~~~n~r~r~~a~~~ 228 (334)
T KOG2933|consen 166 Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ--K-------LLRKLIPILQHSNPRVRAKAALC 228 (334)
T ss_pred H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH--H-------HHHHHHHHHhhhchhhhhhhhcc
Confidence 1 3334444 44333 1 2337899999998888874221 1 24556666778888888777653
No 424
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=37.86 E-value=4.6e+02 Score=33.58 Aligned_cols=128 Identities=12% Similarity=0.195 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCch--hhhHhhcCcHHHHHHHHc
Q 037121 477 ARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGN--HQKVLDAGTVPLLADILA 554 (683)
Q Consensus 477 ~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n--~~~iv~~g~v~~Lv~lL~ 554 (683)
...+|-++.+.|+...+.-... .+++..++..+.++...++..|+.+|.++..-+.. +..-++.|+...+
T Consensus 793 d~~~a~li~~~la~~r~f~~sf---D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~----- 864 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARSFSQSF---DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRL----- 864 (1692)
T ss_pred cchhHHHHHHHHHhhhHHHHhh---HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhh-----
Confidence 3556777777776655444333 56788888888887889999999999999886654 2334444444433
Q ss_pred cCCChhHHHHHHHHHHHhh-CChhhHHHHHhcCChHHHHH-hhccCCChHHHHHHHHHHHHHhcCCh
Q 037121 555 SSNRTELITDSLAVLANLA-EDIQGTSTILKTSALPVIIG-LLQTLTSRAGKEYCVSILLSLCSNAR 619 (683)
Q Consensus 555 ~~~~~~~~~~al~iL~nLa-~~~~~~~~i~~~g~i~~Lv~-lL~~~~s~~~ke~A~~~L~~L~~~~~ 619 (683)
.+....+++.|+..++... ..++......+ .+.+ +++. +-.+|..+..+|..+|...+
T Consensus 865 ~DssasVREAaldLvGrfvl~~~e~~~qyY~-----~i~erIlDt--gvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 865 NDSSASVREAALDLVGRFVLSIPELIFQYYD-----QIIERILDT--GVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred ccchhHHHHHHHHHHhhhhhccHHHHHHHHH-----HHHhhcCCC--chhHHHHHHHHHHHHHHhCC
Confidence 5667889999999999653 45554443332 3333 4544 46778888888888887653
No 425
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=37.72 E-value=25 Score=41.18 Aligned_cols=46 Identities=24% Similarity=0.504 Sum_probs=36.6
Q ss_pred CCccCCCCcccCC--Ccee--ccCcccccHHHHHHHHHh------CCCCCCCCCcc
Q 037121 278 EDFRCPISLELMT--DPVT--VSTGQTYDRSSIQKWLKA------GNMLCPKTGEK 323 (683)
Q Consensus 278 ~~f~CpIc~~~m~--dPv~--~~cght~~r~cI~~w~~~------~~~~CP~c~~~ 323 (683)
..+.|-||.+.|. +||- .+|-|.|...||.+|-.. ..+.||.|...
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 4678999999984 6653 258899999999999876 35789999743
No 426
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=37.63 E-value=2.6e+02 Score=27.04 Aligned_cols=116 Identities=15% Similarity=0.110 Sum_probs=70.7
Q ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHh-----cCC-----------h----HHHHHhhccCCChHH
Q 037121 544 GTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILK-----TSA-----------L----PVIIGLLQTLTSRAG 603 (683)
Q Consensus 544 g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~-----~g~-----------i----~~Lv~lL~~~~s~~~ 603 (683)
+.-+.|+..+..++++.++..|+.+|..|-.....--...+ .+. + ..|+..|+...+...
T Consensus 39 ~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~ 118 (182)
T PF13251_consen 39 PATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPV 118 (182)
T ss_pred CCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 45556777765888999999999999988643221111111 111 0 123444444435667
Q ss_pred HHHHHHHHHHHhcCChH-HHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHh
Q 037121 604 KEYCVSILLSLCSNARE-EVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 604 ke~A~~~L~~L~~~~~~-~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 661 (683)
.-..+++|..|....+- .....+. ..++..+..++.+.+...+-.+...+..+...
T Consensus 119 l~q~lK~la~Lv~~tPY~rL~~~ll--~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 119 LTQLLKCLAVLVQATPYHRLPPGLL--TEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHccCChhhcCHhHH--HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 77888888888887642 2222332 23456666677888888888887777766543
No 427
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=37.34 E-value=2e+02 Score=25.62 Aligned_cols=97 Identities=19% Similarity=0.224 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhh--ccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHH
Q 037121 560 ELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLL--QTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLY 637 (683)
Q Consensus 560 ~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL--~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~ 637 (683)
+.....+.-|+.++.+......|. ..|.+-| ..+.+....-.|+.+|-.|+.++++.+...+......+..|.
T Consensus 18 gp~~~~l~eIa~~t~~~~~~~~I~-----~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~ 92 (125)
T PF01417_consen 18 GPPGKLLAEIAQLTYNSKDCQEIM-----DVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQ 92 (125)
T ss_dssp S--HHHHHHHHHHTTSCHHHHHHH-----HHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGG
T ss_pred CcCHHHHHHHHHHHhccccHHHHH-----HHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcc
Confidence 444556666777776555555444 3555555 223366788899999999999998888888865333444444
Q ss_pred HhHh---cCCH---HHHHHHHHHHHHHHHh
Q 037121 638 SLTT---DGTS---QARKKARSLIKILHKF 661 (683)
Q Consensus 638 ~Ll~---~g~~---~~k~~A~~lL~~l~~~ 661 (683)
.+-. .|.+ .+|.+|..++.+|.+.
T Consensus 93 ~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~ 122 (125)
T PF01417_consen 93 DFQYVDPKGKDQGQNVREKAKEILELLNDD 122 (125)
T ss_dssp G---BBTTSTBHHHHHHHHHHHHHHHHTSH
T ss_pred eeeccCCCCccHHHHHHHHHHHHHHHhCCc
Confidence 4322 2333 3889999999988754
No 428
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=37.25 E-value=3.7e+02 Score=25.94 Aligned_cols=110 Identities=20% Similarity=0.153 Sum_probs=68.7
Q ss_pred ChHHHHH-hhhcCCHHHHHHHHHHHHHcccCCchhhhHhh-----cC---------------cHHHHHHHHccCCChhHH
Q 037121 504 AIPALVK-LIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLD-----AG---------------TVPLLADILASSNRTELI 562 (683)
Q Consensus 504 ~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~-----~g---------------~v~~Lv~lL~~~~~~~~~ 562 (683)
.-+.|+. ++.+.+++++..|+.+|..|.......-...+ .+ .=..|+..|....+..+.
T Consensus 40 ~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l 119 (182)
T PF13251_consen 40 ATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVL 119 (182)
T ss_pred CCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 4445555 55677889999999999888766432111111 01 113355566455677888
Q ss_pred HHHHHHHHHhhC-ChhhHHHHHhcCChHHH----HHhhccCCChHHHHHHHHHHHHHhcC
Q 037121 563 TDSLAVLANLAE-DIQGTSTILKTSALPVI----IGLLQTLTSRAGKEYCVSILLSLCSN 617 (683)
Q Consensus 563 ~~al~iL~nLa~-~~~~~~~i~~~g~i~~L----v~lL~~~~s~~~ke~A~~~L~~L~~~ 617 (683)
...+.+|..|.. .|-.|- +.|.++.+ ..++.+. ++.++..++.++..+..-
T Consensus 120 ~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~-d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 120 TQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHR-DPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Confidence 899999999975 444443 23444444 4466665 788888888887666543
No 429
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=36.66 E-value=18 Score=33.58 Aligned_cols=38 Identities=26% Similarity=0.545 Sum_probs=22.3
Q ss_pred CCCccCCCCcccCCCceeccCcccccHHHHHHHH-HhCCCCCCCCCcccCC
Q 037121 277 PEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWL-KAGNMLCPKTGEKLTN 326 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~-~~~~~~CP~c~~~l~~ 326 (683)
...|.||-|+..+. -.=..... ..|.+.||.|+..+..
T Consensus 97 ~~~Y~Cp~C~~~y~------------~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 97 NAYYKCPNCQSKYT------------FLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred CcEEECcCCCCEee------------HHHHHHhcCCCCcEECCCCCCEEEE
Confidence 55889997664443 11111111 1245899999998854
No 430
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=36.39 E-value=3.5e+02 Score=31.93 Aligned_cols=134 Identities=22% Similarity=0.168 Sum_probs=87.6
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHH-HcCCCCHHHHHHHHHHHHHhccCchhHHH
Q 037121 419 GAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKV-LKSGLSLEARQIAAATLFYLTSVKGYRKL 497 (683)
Q Consensus 419 G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~l-L~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 497 (683)
.-|.-|+.+|.+.|..+.+.+-..+..+... .|+.. .+..||+. ++.+ + ..|+.+|..+- +...
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~--~~~~~----l~~~l~~y~~~t~-s----~~~~~il~~~~---~P~~- 68 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNS--DREPW----LVNGLVDYYLSTN-S----QRALEILVGVQ---EPHD- 68 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhc--cchHH----HHHHHHHHHhhcC-c----HHHHHHHHhcC---CccH-
Confidence 4567889999999999888888777554322 12222 36666664 4444 3 33444554331 1100
Q ss_pred hhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCc-hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhh
Q 037121 498 IGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQG-NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA 573 (683)
Q Consensus 498 i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa 573 (683)
...+..|=+.+. .+..+..++..|+.+..... -..++++...++.|+++|..+.+..+...|+.+|..|-
T Consensus 69 ----K~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 69 ----KHLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred ----HHHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 112223333333 35677788899998887644 57888999999999999987888888888888888764
No 431
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=36.07 E-value=22 Score=40.96 Aligned_cols=43 Identities=23% Similarity=0.606 Sum_probs=31.5
Q ss_pred CCccCCCCcccCCCcee--ccCcccccHHHHHHHHHhCCCCCCC-CC
Q 037121 278 EDFRCPISLELMTDPVT--VSTGQTYDRSSIQKWLKAGNMLCPK-TG 321 (683)
Q Consensus 278 ~~f~CpIc~~~m~dPv~--~~cght~~r~cI~~w~~~~~~~CP~-c~ 321 (683)
..|.|.+|.--.+---. ..|||..--+|...||..|. .||. ||
T Consensus 1027 ~~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd-~CpsGCG 1072 (1081)
T KOG0309|consen 1027 FTFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGD-VCPSGCG 1072 (1081)
T ss_pred ceeeeeeEeeEeeccchhhccccccccHHHHHHHHhcCC-cCCCCCC
Confidence 45778888654443333 36999999999999999854 8886 54
No 432
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=35.89 E-value=1.2e+02 Score=35.15 Aligned_cols=140 Identities=16% Similarity=0.098 Sum_probs=98.2
Q ss_pred ChHHHHhhcCC----CCHHHHHHHHHHHHhh-ccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchh
Q 037121 420 AIPPLLNLLSS----PDQCVQENAVAALLKL-SKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGY 494 (683)
Q Consensus 420 ~i~~Lv~lL~s----~d~~~q~~A~~aL~nL-s~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~ 494 (683)
+-|......++ +|+.+|..|.-+|..+ +...+-+ ...+|.++..+.....+..|.||.-.|..+...-.+
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~ 967 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT 967 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence 44555556655 7899999998888765 2222212 235889999998654888999998888776543221
Q ss_pred HHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC
Q 037121 495 RKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE 574 (683)
Q Consensus 495 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~ 574 (683)
- + ...-..|...|.+.+..+++.++.++.+|..-...+. .|-.+.+..+| .+++.++.+.|-..+..++.
T Consensus 968 ~--~---de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KV----KGqlg~ma~~L-~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 968 T--A---DEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKV----KGQLGKMALLL-TDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred h--h---HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceee----ccchhhhHhhc-cCCcchHHHHHHHHHHHHHh
Confidence 1 1 1233456667777888999999999999876543332 37788889999 78888888888888888875
No 433
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=35.58 E-value=35 Score=25.86 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=20.9
Q ss_pred ccccHHHHHHHHHhCCCCCCCCCcccCCC
Q 037121 299 QTYDRSSIQKWLKAGNMLCPKTGEKLTNT 327 (683)
Q Consensus 299 ht~~r~cI~~w~~~~~~~CP~c~~~l~~~ 327 (683)
.|||..|.+..+ +..||.|+-.|..+
T Consensus 29 CTFC~~C~e~~l---~~~CPNCgGelv~R 54 (57)
T PF06906_consen 29 CTFCADCAETML---NGVCPNCGGELVRR 54 (57)
T ss_pred CcccHHHHHHHh---cCcCcCCCCccccC
Confidence 499999999877 45899999877543
No 434
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=35.53 E-value=16 Score=26.77 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=8.7
Q ss_pred CCCCCccCCCCcc
Q 037121 275 LNPEDFRCPISLE 287 (683)
Q Consensus 275 ~~~~~f~CpIc~~ 287 (683)
++|+++.||+|..
T Consensus 30 ~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 30 DLPDDWVCPVCGA 42 (47)
T ss_dssp GS-TT-B-TTTSS
T ss_pred HCCCCCcCcCCCC
Confidence 7899999999974
No 435
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.41 E-value=23 Score=29.51 Aligned_cols=13 Identities=15% Similarity=0.697 Sum_probs=12.1
Q ss_pred cccHHHHHHHHHh
Q 037121 300 TYDRSSIQKWLKA 312 (683)
Q Consensus 300 t~~r~cI~~w~~~ 312 (683)
.|||.|+..|+.+
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 6999999999987
No 436
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=34.14 E-value=31 Score=30.05 Aligned_cols=51 Identities=24% Similarity=0.481 Sum_probs=30.3
Q ss_pred CCCCccCCCCcccCCCceecc-Cc-----ccccHHHHHHHHHhCCCCCCCCCcccCCC
Q 037121 276 NPEDFRCPISLELMTDPVTVS-TG-----QTYDRSSIQKWLKAGNMLCPKTGEKLTNT 327 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~dPv~~~-cg-----ht~~r~cI~~w~~~~~~~CP~c~~~l~~~ 327 (683)
+++.++|||+++.-..-|.+. .+ +-|+...+.+.... +..-|.+|.+++..
T Consensus 37 ~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~-~~~HPLSREpit~s 93 (113)
T PF06416_consen 37 PEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVRE-GAPHPLSREPITPS 93 (113)
T ss_dssp -CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHC-T---TTT-----TT
T ss_pred CHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHc-CCCCCCccCCCChh
Confidence 356789999999999999762 22 35999999999887 44568888877654
No 437
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=34.11 E-value=27 Score=33.08 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=16.6
Q ss_pred CccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcc
Q 037121 279 DFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEK 323 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~ 323 (683)
.+.||+|+-+..+ .....||.|+.+
T Consensus 134 ~~vC~vCGy~~~g--------------------e~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEG--------------------EAPEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccC--------------------CCCCcCCCCCCh
Confidence 6789888444433 135689999864
No 438
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=33.83 E-value=27 Score=42.30 Aligned_cols=47 Identities=15% Similarity=0.284 Sum_probs=36.0
Q ss_pred CccCCCCcccC-----CCceec--cCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 279 DFRCPISLELM-----TDPVTV--STGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 279 ~f~CpIc~~~m-----~dPv~~--~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
.-.|.||++-. -+|.+. .||--.||.|.+-=.++|+..||.|+.+..
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 34799998764 345543 588889999997666779999999988765
No 439
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=32.95 E-value=6.4e+02 Score=27.87 Aligned_cols=53 Identities=23% Similarity=0.235 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCcchhhhHHhhHHHHHHHHHHHHHHHHHhhcCCCCCcccchhHHH
Q 037121 81 DLVVLCFSELHLTFQKVQFLMEDCTREGAKLWVLMKSQFIATQFRVLIRAIATALDVFPLDTVDICGEVKE 151 (683)
Q Consensus 81 ~~~~~~l~~L~~~l~~ak~Ll~~c~~~~Sklyll~~~~~i~~~f~~~~~~l~~~L~~lp~~~l~ls~ev~e 151 (683)
|.....|..|..-|+.++.++..-. |.+....+...|-.||+..++-..|+.|
T Consensus 195 P~i~~~l~~L~~~Lk~gyk~~t~gK------------------F~eA~~~Fr~iL~~i~l~vv~~~~E~~e 247 (422)
T PF06957_consen 195 PAIPLSLSSLEERLKEGYKLFTAGK------------------FEEAIEIFRSILHSIPLLVVESREEEDE 247 (422)
T ss_dssp BB----HHHHHHHHHHHHHHHHTT-------------------HHHHHHHHHHHHHHHHC--BSSCHHHHH
T ss_pred CcCcCCHHHHHHHHHHHHHHHhcCC------------------HHHHHHHHHHHHHHhheeeecCHHHHHH
Confidence 3456788999999999988876544 6677777777777788776665555444
No 440
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=32.92 E-value=32 Score=30.16 Aligned_cols=14 Identities=29% Similarity=0.809 Sum_probs=8.5
Q ss_pred CCCCCCCCcccCCC
Q 037121 314 NMLCPKTGEKLTNT 327 (683)
Q Consensus 314 ~~~CP~c~~~l~~~ 327 (683)
.-+||+|+..+...
T Consensus 26 PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 26 PIVCPKCGTEFPPE 39 (108)
T ss_pred CccCCCCCCccCcc
Confidence 34577777665443
No 441
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=32.79 E-value=1.1e+02 Score=26.06 Aligned_cols=60 Identities=10% Similarity=0.149 Sum_probs=46.5
Q ss_pred hhhhhHHHHHHHHhhhHHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHcccCcch
Q 037121 50 TQRRNAREAIRQIGILLIFFEEIRDRGLNLSDLVVLCFSELHLTFQKVQFLMEDCTREGAK 110 (683)
Q Consensus 50 ~~k~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~~Sk 110 (683)
+.|+|=..|++++.-..|+|+.|...+. +.+.-...+..-...-++|+.|+..--.+|++
T Consensus 10 ~L~~~R~~Lv~~l~~v~~ilD~Ll~~~V-lt~ee~e~I~~~~t~~~qAr~Lld~l~~KG~~ 69 (94)
T cd08329 10 LIRKNRMALFQHLTSVLPILDSLLSANV-ITEQEYDVIKQKTQTPLQARELIDTVLVKGNA 69 (94)
T ss_pred HHHHhHHHHHHHHhhhHHHHHHHHHcCC-CCHHHHHHHHcCCChHHHHHHHHHHHHhhhHH
Confidence 6799999999999889999999996663 66666666655555669999999886645533
No 442
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=32.68 E-value=6.2e+02 Score=26.74 Aligned_cols=197 Identities=13% Similarity=0.101 Sum_probs=121.0
Q ss_pred hHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch-----hHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHH
Q 037121 454 KVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKG-----YRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIF 528 (683)
Q Consensus 454 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-----~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~ 528 (683)
..+..+|.+..++..+... ..+.+..++-+..++-..+- ...-+......+..|+.--.. .++....+...|.
T Consensus 73 qef~~~~~l~~lI~~l~~l-~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKL-EFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhhhcc-cchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence 4566899999999999998 88999999888888854321 122222223344444443111 2444444444555
Q ss_pred HcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCC---hHH-HHHhhccCCChHH
Q 037121 529 GLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSA---LPV-IIGLLQTLTSRAG 603 (683)
Q Consensus 529 nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~---i~~-Lv~lL~~~~s~~~ 603 (683)
....++--...+.....+......+ ..+.=++...|..+...+.. +......+...+- .+. --.+++++ +--+
T Consensus 151 Ecirhe~LakiiL~s~~~~~FF~~v-q~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt 228 (342)
T KOG1566|consen 151 ECIRHEFLAKIILESTNFEKFFLYV-QLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT 228 (342)
T ss_pred HHHhhHHHHHHHHcchhHHHHHHHH-hccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence 5555555566667777777777777 44555788888888887754 4334444444432 244 44477777 7778
Q ss_pred HHHHHHHHHHHhcCCh-HHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHH
Q 037121 604 KEYCVSILLSLCSNAR-EEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSL 654 (683)
Q Consensus 604 ke~A~~~L~~L~~~~~-~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~l 654 (683)
+..+..+|..+-...+ ..+...-+.++.-+..+..++.+.+..++-.|=-.
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhv 280 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHV 280 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHH
Confidence 8888888887665432 22222333334557788888887766666555433
No 443
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=31.82 E-value=2.8e+02 Score=23.13 Aligned_cols=71 Identities=13% Similarity=0.104 Sum_probs=44.2
Q ss_pred hhhhHHHHHHHHhhhHHhHHHHHhcCCCCCHHHHHHHHHHH---HHHHHHHHHHHHcccCcchhhhHHhhHHHHHHHHHH
Q 037121 51 QRRNAREAIRQIGILLIFFEEIRDRGLNLSDLVVLCFSELH---LTFQKVQFLMEDCTREGAKLWVLMKSQFIATQFRVL 127 (683)
Q Consensus 51 ~k~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~---~~l~~ak~Ll~~c~~~~Sklyll~~~~~i~~~f~~~ 127 (683)
.+.|=..|+.+|+-..||++.|...+. ++.+-....+.-- .-+++...+++.|. +.....|..+
T Consensus 3 l~~hRe~LV~rI~~v~plLD~Ll~n~~-it~E~y~~V~a~~T~qdkmRkLld~v~akG------------~~~k~~F~~i 69 (85)
T cd08324 3 LKSNRELLVTHIRNTQCLVDNLLKNDY-FSTEDAEIVCACPTQPDKVRKILDLVQSKG------------EEVSEYFLYL 69 (85)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhccCC-ccHHHHHHHHhCCCCHHHHHHHHHHHHhcC------------chHHHHHHHH
Confidence 467778999999999999999987653 3443333333333 33444444455555 4555566666
Q ss_pred HHHHHHH
Q 037121 128 IRAIATA 134 (683)
Q Consensus 128 ~~~l~~~ 134 (683)
-.++..+
T Consensus 70 L~e~~~~ 76 (85)
T cd08324 70 LQQLADA 76 (85)
T ss_pred HHHHHHh
Confidence 6655544
No 444
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=31.59 E-value=2.8e+02 Score=24.07 Aligned_cols=70 Identities=13% Similarity=-0.005 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-chhhHHHHhcCChHHHHhhcC------CCCHHHHHHHHHHHHhh
Q 037121 377 LMSRFLARRLFFGTNEEKNKAAYEIRLLAKSN-IFNRSCIVESGAIPPLLNLLS------SPDQCVQENAVAALLKL 446 (683)
Q Consensus 377 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~------s~d~~~q~~A~~aL~nL 446 (683)
..+..|.++|.+.++..+..|+..|-.+.+.. ......+....++..++.+.. ..+..+++.+..++...
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 36778888999999999999999999999854 344556666665555554311 13677788777666543
No 445
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=31.34 E-value=9.1e+02 Score=28.28 Aligned_cols=193 Identities=15% Similarity=0.118 Sum_probs=105.6
Q ss_pred cCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch------h-hHHh--hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 037121 418 SGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG------K-KVIV--ESGGLKVILKVLKSGLSLEARQIAAATLFYL 488 (683)
Q Consensus 418 ~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~------r-~~i~--~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~L 488 (683)
.|-++.+|+.++.+|+++|..|+..|......... + -+++ .-|.+..+-+-+. ....+...+.+|.-|
T Consensus 47 k~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~---~~n~Kk~laDIlSvL 123 (878)
T KOG2005|consen 47 KGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMA---DSNLKKWLADILSVL 123 (878)
T ss_pred hhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhcc---CchhHhHHHHHHHHH
Confidence 35578999999999999999999999887543322 2 3444 3344444444333 346788899999999
Q ss_pred ccCchhHHHhhc--cCC-----------ChHHHHHhhhc------CC----HHHHHHHHHHHHH-cccCC--chhhhHhh
Q 037121 489 TSVKGYRKLIGE--TPK-----------AIPALVKLIEE------GT----DCGKKNAVVAIFG-LLLSQ--GNHQKVLD 542 (683)
Q Consensus 489 s~~~~~~~~i~~--~~g-----------~i~~Lv~lL~~------~~----~~~~~~A~~aL~n-Ls~~~--~n~~~iv~ 542 (683)
+....++..-.. ..| .+.-|..-+.. .+ .....-+..++-. +-.+. +.+..+++
T Consensus 124 amt~se~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~mkHNAE~eAiDlL~E 203 (878)
T KOG2005|consen 124 AMTMSERGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHMKHNAEFEAIDLLME 203 (878)
T ss_pred heeecccchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 876544332211 011 12222211111 01 1222222233322 22222 24677788
Q ss_pred cCcHHHHHHHHccCC----------------Chh---HHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHH
Q 037121 543 AGTVPLLADILASSN----------------RTE---LITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAG 603 (683)
Q Consensus 543 ~g~v~~Lv~lL~~~~----------------~~~---~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ 603 (683)
-|.|+.|++....++ .|+ +.+-|+.+-......++.....+.-+-.+.+.++..+-.++..
T Consensus 204 ve~id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ai~l~~~~~v~~vf~s~~D~~~ 283 (878)
T KOG2005|consen 204 VEGIDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVGAIRLDDMKEVKEVFTSCTDPLL 283 (878)
T ss_pred hhhHhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHhccCHHH
Confidence 888888888773222 122 4444555555444544444444455556666666665545666
Q ss_pred HHHHHHHHHH
Q 037121 604 KEYCVSILLS 613 (683)
Q Consensus 604 ke~A~~~L~~ 613 (683)
|...+.+|..
T Consensus 284 kKQ~~ymLaR 293 (878)
T KOG2005|consen 284 KKQMAYMLAR 293 (878)
T ss_pred HHHHHHHHHh
Confidence 6666666643
No 446
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=31.05 E-value=2.5e+02 Score=32.67 Aligned_cols=105 Identities=14% Similarity=0.106 Sum_probs=70.1
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhc------CcHHHHHHHHccCCChhHHHHHHHHHHHhhCC---
Q 037121 505 IPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDA------GTVPLLADILASSNRTELITDSLAVLANLAED--- 575 (683)
Q Consensus 505 i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~------g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~--- 575 (683)
...++++|.+.+-..+-..+.++.|+..+.....+++++ ..+..|++-| .+..+-.+..|+.++..++.-
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl-~D~~py~RtKalqv~~kifdl~sk 379 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERL-SDTYPYTRTKALQVLEKIFDLNSK 379 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHhCccc
Confidence 456778888877777777777778887654433444442 3455555556 677899999999999998842
Q ss_pred -hhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 037121 576 -IQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCS 616 (683)
Q Consensus 576 -~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~ 616 (683)
+..|..+. ...++-++.. +..++.+|+.++..|-.
T Consensus 380 ~~~~r~ev~-----~lv~r~lqDr-ss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 380 TVGRRHEVI-----RLVGRRLQDR-SSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred ccchHHHHH-----HHHHHHhhhh-hHHHHHHHHHHHHHHHh
Confidence 33333333 3445566666 78889999988776543
No 447
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=31.04 E-value=29 Score=35.37 Aligned_cols=49 Identities=22% Similarity=0.598 Sum_probs=32.7
Q ss_pred CCCCCccCCCCcccCCC-------------cee-ccCcccccHHHHHHHHHhCC---------CCCCCCCcccCCC
Q 037121 275 LNPEDFRCPISLELMTD-------------PVT-VSTGQTYDRSSIQKWLKAGN---------MLCPKTGEKLTNT 327 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~d-------------Pv~-~~cght~~r~cI~~w~~~~~---------~~CP~c~~~l~~~ 327 (683)
+-+.-|.|+.|...+.. |-. .-||--|.| .|+-.|+ +.||.|++.+.++
T Consensus 157 ~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSR----PWLLQGHiRTHTGEKPF~C~hC~kAFADR 228 (279)
T KOG2462|consen 157 DSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSR----PWLLQGHIRTHTGEKPFSCPHCGKAFADR 228 (279)
T ss_pred cccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccc----hHHhhcccccccCCCCccCCcccchhcch
Confidence 33678999999876631 211 236777777 4665533 6899999888654
No 448
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=31.00 E-value=2.9e+02 Score=28.62 Aligned_cols=72 Identities=17% Similarity=0.053 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhh-HHHHhcCChHHH----HhhcC--------CCCHHHHHHHHHH
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNR-SCIVESGAIPPL----LNLLS--------SPDQCVQENAVAA 442 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r-~~i~~~G~i~~L----v~lL~--------s~d~~~q~~A~~a 442 (683)
...++.++..+...+++.+..++..|..+...-+... ..+...|..+.+ ..+|. .+...+...|..+
T Consensus 118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 3467888899988899999999999999987543332 235666755543 33443 2456677788888
Q ss_pred HHhhc
Q 037121 443 LLKLS 447 (683)
Q Consensus 443 L~nLs 447 (683)
|..|.
T Consensus 198 L~~L~ 202 (282)
T PF10521_consen 198 LLSLL 202 (282)
T ss_pred HHHHH
Confidence 88774
No 449
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=30.79 E-value=2.7e+02 Score=23.16 Aligned_cols=73 Identities=18% Similarity=0.253 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhcCCCCCcccchhHHHHHHHHHHHHHHhhhc---CChhHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHh
Q 037121 126 VLIRAIATALDVFPLDTVDICGEVKELVDLVAKQARKAKFE---LDKEDERAMKRVLSILNYFEKGIEPDSGFMTWVLDY 202 (683)
Q Consensus 126 ~~~~~l~~~L~~lp~~~l~ls~ev~e~v~l~~~~~~~a~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 202 (683)
..-.++..-|+..|- ++++-++.+..+..|..++-.. .+..+..+.+.+..++..|+-+-+.=...++.+.+.
T Consensus 4 ~~L~~L~~eL~~~~~----ld~~~~~~L~~l~~dIe~~L~~~~~~~~~~~~l~d~l~~av~~FE~~HP~l~~~lr~i~~s 79 (85)
T PF14357_consen 4 ELLEKLHQELEQNPP----LDEETRAELSSLDDDIEAQLAEEDEAEAEDESLVDRLNEAVERFEASHPKLAGILRNIMDS 79 (85)
T ss_pred HHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 334455555555532 4466667777777666654433 456777788888887777774433333445555543
No 450
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=30.66 E-value=39 Score=39.49 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=48.8
Q ss_pred CCCCCccCCCCcccCCCcee-ccCcccccHHHHHHHHHh-----CCCCCCCCCcccCCCCCCCcHHHHHHHHHHH
Q 037121 275 LNPEDFRCPISLELMTDPVT-VSTGQTYDRSSIQKWLKA-----GNMLCPKTGEKLTNTELLPNTTLKKLIHQFC 343 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~-~~cght~~r~cI~~w~~~-----~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~ 343 (683)
.+.-.+.|||+..-|.-|+- ..|+|.=|-.. .|+.. +.+.||+|.+......++.+.-+.+.+...-
T Consensus 302 ~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~--~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~~~~ 374 (636)
T KOG2169|consen 302 SLRVSLNCPLSKMRMSLPARGHTCKHLQCFDA--LSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQSCQ 374 (636)
T ss_pred cceeEecCCcccceeecCCcccccccceecch--hhhHHhccCCCeeeCccCCccccccchhhhHHHHHHHhhcc
Confidence 45678999999999998885 58987544332 33332 4578999999888888888877777665544
No 451
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=30.35 E-value=6.1e+02 Score=25.98 Aligned_cols=105 Identities=20% Similarity=0.231 Sum_probs=59.0
Q ss_pred hHHHHhcCChH-HHHhhcCC--CCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcC-CCCHHHHHHHHHHHHH
Q 037121 412 RSCIVESGAIP-PLLNLLSS--PDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKS-GLSLEARQIAAATLFY 487 (683)
Q Consensus 412 r~~i~~~G~i~-~Lv~lL~s--~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~e~~~~Aa~~L~~ 487 (683)
+.++++.++++ -|+.+|.+ ++..+-..++..|.+|+.--+. + ... +.+...+........+
T Consensus 33 ~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~------------~---~~~~~~~~~~~~~~~~l~~~ 97 (266)
T PF04821_consen 33 RRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIEL------------L---VESQPKDKNQRRNIPELLKY 97 (266)
T ss_pred HHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHH------------h---ccCCCCChHHHHHHHHHHHH
Confidence 34444444444 35555543 4788889999999999742110 0 000 0122333333333333
Q ss_pred hccCchhHHHhhccCCChHHHHHhhhc-----------CCHHHHHHHHHHHHHcccCCc
Q 037121 488 LTSVKGYRKLIGETPKAIPALVKLIEE-----------GTDCGKKNAVVAIFGLLLSQG 535 (683)
Q Consensus 488 Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-----------~~~~~~~~A~~aL~nLs~~~~ 535 (683)
+. .+|..+.. .+++..++.++.. .+....+..+..+.|+..-++
T Consensus 98 l~---~yK~afl~-~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~ 152 (266)
T PF04821_consen 98 LQ---SYKEAFLD-PRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPD 152 (266)
T ss_pred HH---HHHHHHcc-cHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 33 46666666 6777777766532 124567788888999987543
No 452
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=30.33 E-value=21 Score=36.64 Aligned_cols=42 Identities=7% Similarity=0.140 Sum_probs=26.9
Q ss_pred CccCCCCcccC-CCceeccCcccccHHHHHHHHHhCCCCCCCCCcc
Q 037121 279 DFRCPISLELM-TDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEK 323 (683)
Q Consensus 279 ~f~CpIc~~~m-~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~ 323 (683)
--+|--|.-.. .---.++|.|.||..|-.. + ..+.||.|..+
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~-~dK~Cp~C~d~ 132 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARS--D-SDKICPLCDDR 132 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhc--C-ccccCcCcccH
Confidence 34566665333 2223579999999999432 2 25789999654
No 453
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=30.26 E-value=3.5e+02 Score=24.69 Aligned_cols=30 Identities=20% Similarity=0.177 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCCChH---HHHHHHHHHHHHHH
Q 037121 194 GFMTWVLDYLEIKSWS---DCNSEIKFLEELVA 223 (683)
Q Consensus 194 ~~l~~~~~~l~l~~~~---~~~~E~~~l~~~~~ 223 (683)
+.+..++++|||+|.. +|...+..|..+++
T Consensus 94 ~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~ 126 (132)
T PF05597_consen 94 ERVARALNRLGVPSRKDVEALSARIDQLTAQVE 126 (132)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4466788899999844 34555555655553
No 454
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=29.51 E-value=32 Score=26.41 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=19.7
Q ss_pred CCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCc
Q 037121 278 EDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGE 322 (683)
Q Consensus 278 ~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~ 322 (683)
-.|.||-|++.+.- - |..|-. ..+...||.|+.
T Consensus 26 v~F~CPnCGe~~I~----R-----c~~CRk---~g~~Y~Cp~CGF 58 (61)
T COG2888 26 VKFPCPNCGEVEIY----R-----CAKCRK---LGNPYRCPKCGF 58 (61)
T ss_pred eEeeCCCCCceeee----h-----hhhHHH---cCCceECCCcCc
Confidence 36899999876542 1 233311 223468999985
No 455
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=29.48 E-value=1.2e+02 Score=31.68 Aligned_cols=55 Identities=24% Similarity=0.228 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--------------chhhHHHHhcCChHHHHhhcC
Q 037121 375 MKLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSN--------------IFNRSCIVESGAIPPLLNLLS 429 (683)
Q Consensus 375 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~--------------~~~r~~i~~~G~i~~Lv~lL~ 429 (683)
.+..+..++..|..++.+.+.+|++.|-.++.+. ..|...+.+.|++++|+.+|.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4557889999999999889999999998887643 256667888899999988885
No 456
>PLN03086 PRLI-interacting factor K; Provisional
Probab=29.46 E-value=60 Score=37.06 Aligned_cols=50 Identities=10% Similarity=0.284 Sum_probs=27.4
Q ss_pred CCCCCccCCCCcccCC------------CceeccCcccccHHHHHHHHHh----CCCCCCCCCccc
Q 037121 275 LNPEDFRCPISLELMT------------DPVTVSTGQTYDRSSIQKWLKA----GNMLCPKTGEKL 324 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~------------dPv~~~cght~~r~cI~~w~~~----~~~~CP~c~~~l 324 (683)
++++++.|+.|...+. .|+.-+||..+.+.-+..+... ....|+.|+..+
T Consensus 449 el~~H~~C~~Cgk~f~~s~LekH~~~~Hkpv~CpCg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v 514 (567)
T PLN03086 449 EAKNHVHCEKCGQAFQQGEMEKHMKVFHEPLQCPCGVVLEKEQMVQHQASTCPLRLITCRFCGDMV 514 (567)
T ss_pred ccccCccCCCCCCccchHHHHHHHHhcCCCccCCCCCCcchhHHHhhhhccCCCCceeCCCCCCcc
Confidence 5566777777766542 2333336666666655555432 123566666555
No 457
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=28.54 E-value=39 Score=20.69 Aligned_cols=7 Identities=43% Similarity=1.327 Sum_probs=3.2
Q ss_pred CCCCCCc
Q 037121 316 LCPKTGE 322 (683)
Q Consensus 316 ~CP~c~~ 322 (683)
.||.|+.
T Consensus 15 fC~~CG~ 21 (23)
T PF13240_consen 15 FCPNCGT 21 (23)
T ss_pred chhhhCC
Confidence 3454443
No 458
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=28.30 E-value=4.9e+02 Score=24.24 Aligned_cols=87 Identities=20% Similarity=0.271 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhhcCCCCCcccchhHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHhcC
Q 037121 125 RVLIRAIATALDVFPLDTVDICGEVKELVDLVAKQARKAKFELDKEDERAMKRVLSILNYFEKGIEPDSGFMTWVLDYLE 204 (683)
Q Consensus 125 ~~~~~~l~~~L~~lp~~~l~ls~ev~e~v~l~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~ 204 (683)
.++...|.+++.-=|+. ++.|.+.|..+..+++. ....+...+.+++.+++.|+..+ +-.+++..+-+-.
T Consensus 64 ~Kl~~gl~~A~~KRpVs----~e~ie~~v~~ie~~Lr~-~g~~EV~S~~IG~~VM~~Lk~lD-----~VAYvRFASVYr~ 133 (156)
T COG1327 64 EKLRRGLIRACEKRPVS----SEQIEEAVSHIERQLRS-SGEREVPSKEIGELVMEELKKLD-----EVAYVRFASVYRS 133 (156)
T ss_pred HHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHhcc-----hhhhhhhhhHhcc
Confidence 34667788888877864 35666777777788774 55667788899999999887333 3467777778888
Q ss_pred CCChHHHHHHHHHHHHH
Q 037121 205 IKSWSDCNSEIKFLEEL 221 (683)
Q Consensus 205 l~~~~~~~~E~~~l~~~ 221 (683)
..+..+..+|+..|.++
T Consensus 134 F~dv~~F~e~i~~l~~~ 150 (156)
T COG1327 134 FKDVDDFEEEIEELTKE 150 (156)
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 89999998888887774
No 459
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=28.24 E-value=3.4e+02 Score=31.99 Aligned_cols=122 Identities=12% Similarity=0.082 Sum_probs=76.5
Q ss_pred cCChHHHHhhcCC--------CCHHHHHHHHHHHHhhcc--CCch-hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHH
Q 037121 418 SGAIPPLLNLLSS--------PDQCVQENAVAALLKLSK--HTSG-KKVIVESGGLKVILKVLKSGLSLEARQIAAATLF 486 (683)
Q Consensus 418 ~G~i~~Lv~lL~s--------~d~~~q~~A~~aL~nLs~--~~~~-r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~ 486 (683)
.|.++.++..|.. +++.-.+-|+.++.++.. .... -..+++.=+++.++-.+++. ..=.+..|+.++.
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~-ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSN-YGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCc-ccchHHHHHHHHH
Confidence 5888999998832 234445566666666643 2222 33344444555555566665 5566778888888
Q ss_pred HhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhc
Q 037121 487 YLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDA 543 (683)
Q Consensus 487 ~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~ 543 (683)
.++.+-...... ..+.....+.+++.+-.++..|+.||..+..+.....++.++
T Consensus 486 ~~eeDfkd~~il---l~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sah 539 (970)
T COG5656 486 TIEEDFKDNGIL---LEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAH 539 (970)
T ss_pred HHHHhcccchHH---HHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhh
Confidence 774432222222 346667777888877788889999999888877665555544
No 460
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=28.19 E-value=6.6e+02 Score=29.75 Aligned_cols=73 Identities=16% Similarity=0.126 Sum_probs=37.0
Q ss_pred HHHHHHHhhhHHhHHHHHhcCCCC----CHHHHHHHHHHHHHHHHHHHHHHHcccCcchhhhHHhhHHHHHHHHHHHHHH
Q 037121 56 REAIRQIGILLIFFEEIRDRGLNL----SDLVVLCFSELHLTFQKVQFLMEDCTREGAKLWVLMKSQFIATQFRVLIRAI 131 (683)
Q Consensus 56 ~~l~r~~~ll~~lleel~~~~~~~----~~~~~~~l~~L~~~l~~ak~Ll~~c~~~~Sklyll~~~~~i~~~f~~~~~~l 131 (683)
.+|++.-+++.|..+.|.+. .+. -.....+......-++++|..+..-. +| +-.-|.++.+|..+....
T Consensus 4 ~ql~qlt~i~~~~~~~L~~~-i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L~-~~-----l~~ID~ai~~~l~lIe~~ 76 (683)
T PF08580_consen 4 NQLSQLTSILLPIALYLSES-IPTAFNAVKALSGAAEQILDWIQKAKDVLYGLR-EG-----LEEIDSAISRFLDLIEVY 76 (683)
T ss_pred HHHHHHHhcccchHHHHHHH-hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-Hh-----HHHHHHHHHHHHHHHHhh
Confidence 47888888899988888764 110 11112223333333444444444332 21 123366666666665554
Q ss_pred HHHh
Q 037121 132 ATAL 135 (683)
Q Consensus 132 ~~~L 135 (683)
-.+.
T Consensus 77 v~~i 80 (683)
T PF08580_consen 77 VSAI 80 (683)
T ss_pred cccc
Confidence 3333
No 461
>PLN02400 cellulose synthase
Probab=27.96 E-value=28 Score=42.40 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=35.0
Q ss_pred ccCCCCcccC-----CCceec--cCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 280 FRCPISLELM-----TDPVTV--STGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 280 f~CpIc~~~m-----~dPv~~--~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
-.|.||++-. -+|.+. .||--.||.|.+-=.++|+..||.|+....
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 3899998764 244443 588889999997556678999999988765
No 462
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=27.58 E-value=80 Score=24.43 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=9.9
Q ss_pred CCCCCCCCCcccCC
Q 037121 313 GNMLCPKTGEKLTN 326 (683)
Q Consensus 313 ~~~~CP~c~~~l~~ 326 (683)
.|.+||.||.+++.
T Consensus 2 ~HkHC~~CG~~Ip~ 15 (59)
T PF09889_consen 2 PHKHCPVCGKPIPP 15 (59)
T ss_pred CCCcCCcCCCcCCc
Confidence 36778888877654
No 463
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=27.52 E-value=30 Score=32.21 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=17.0
Q ss_pred CCccCCCCcccCCCceeccC
Q 037121 278 EDFRCPISLELMTDPVTVST 297 (683)
Q Consensus 278 ~~f~CpIc~~~m~dPv~~~c 297 (683)
++-+||||++.-.+.|++-|
T Consensus 1 ed~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CCccCceeccCCCceEEEEe
Confidence 46789999999999998743
No 464
>KOG4713 consensus Cyclin-dependent kinase 2-associated protein [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=27.40 E-value=74 Score=30.01 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=33.0
Q ss_pred HHhhhHHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHcc
Q 037121 61 QIGILLIFFEEIRDRGLNLSDLVVLCFSELHLTFQKVQFLMEDCT 105 (683)
Q Consensus 61 ~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~ 105 (683)
+..-|+.++||+...-.+--.-...+.|.|..-+..||.|++.|-
T Consensus 136 kY~~LL~vieEmgkeirpTyagsks~~ERLKr~I~hAR~lVRecl 180 (189)
T KOG4713|consen 136 KYADLLSVIEEMGKEIRPTYAGSKSAMERLKRDIIHARLLVRECL 180 (189)
T ss_pred HHHHHHHHHHHHhcccCccccccccHHHHHHhhHHHHHHHHHHHH
Confidence 334566788999743333333446678899999999999999997
No 465
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=27.36 E-value=1.1e+03 Score=27.95 Aligned_cols=257 Identities=12% Similarity=0.081 Sum_probs=121.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHh-cCchhhHHHHhcCChHHHHhhcCC--CCHHHHHHHHHHHHhhccCCch-h
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAK-SNIFNRSCIVESGAIPPLLNLLSS--PDQCVQENAVAALLKLSKHTSG-K 453 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~-~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~q~~A~~aL~nLs~~~~~-r 453 (683)
.+.+++.-|.+...-...+.+..|..-.| ..+..|..+.+.|++..+++.|.+ .+..+-..+..+++-|+.+.-| .
T Consensus 333 d~~yiLStlq~~~~~m~trCLSaISla~Kc~~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylLs~d~lnmd 412 (865)
T KOG2152|consen 333 DLEYILSTLQSALLPMETRCLSAISLADKCVMPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLLSRDKLNMD 412 (865)
T ss_pred hHHHHHhhhhhccccHHHHHHhhhhhhhhccChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHHhhhhhccc
Confidence 34555555555421122233333333222 247889999999999999998865 3333333444555555544222 1
Q ss_pred hHHhhcCcHHHHHHHHc---CCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHH-HHH
Q 037121 454 KVIVESGGLKVILKVLK---SGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVA-IFG 529 (683)
Q Consensus 454 ~~i~~~g~i~~Lv~lL~---~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~a-L~n 529 (683)
.. -.-++..+.+|. .+.+.+.+..-....+... ......+.. |+-..=.++ .+.+..--..|..+ +..
T Consensus 413 ld---f~Slelmi~LL~~ek~~gS~e~~~~~~n~~~evi--r~L~e~~~~--gG~~~h~n~-~~~t~~~~~lamet~vl~ 484 (865)
T KOG2152|consen 413 LD---FLSLELMIHLLRLEKFEGSHESRDKFTNLVKEVI--RSLCELQLR--GGQKVHLNM-RNETLGPSSLAMETLVLI 484 (865)
T ss_pred cc---chhHHHHHHHHhhhcccCChhhHHHHHHHHHHHH--HHHHHHHHh--cCCcccccc-cCCCCCchhhhhheeEEE
Confidence 11 123455556654 2225555532221111110 011111111 110000000 11111111344455 444
Q ss_pred cccCC--c-hhhhHhhcCcHHHHHHHHccCC-----------ChhHHHHHHHHHHHhhC-ChhhHHHHHhcCC---hHHH
Q 037121 530 LLLSQ--G-NHQKVLDAGTVPLLADILASSN-----------RTELITDSLAVLANLAE-DIQGTSTILKTSA---LPVI 591 (683)
Q Consensus 530 Ls~~~--~-n~~~iv~~g~v~~Lv~lL~~~~-----------~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~---i~~L 591 (683)
|++.. + .+..+...|+.+..+..+...- .....+.|+.+|.+.+. ++.+...++..|. +..+
T Consensus 485 lsSk~~~d~~k~elr~Lg~lq~iv~~i~~~~~~~~~~~~e~~~~~tL~rC~rvles~s~hn~snq~yLis~gs~i~issl 564 (865)
T KOG2152|consen 485 LSSKRAGDWFKSELRNLGGLQHIVSKIETNVSPTSDNGDESSVILTLERCLRVLESVSVHNGSNQGYLISLGSGILISSL 564 (865)
T ss_pred EeccccchhHHHHHHhcchHHHHHHHHHhccCcCCCCcchhhHHHhHHHHHHHhhcccccCcchhHHHHhccCChhhHhH
Confidence 44432 2 3778888899999888874211 12344778888888875 5566666655542 4455
Q ss_pred --HHhhcc-------CCChHHHHH----------HHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhc
Q 037121 592 --IGLLQT-------LTSRAGKEY----------CVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTD 642 (683)
Q Consensus 592 --v~lL~~-------~~s~~~ke~----------A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~ 642 (683)
.+.+++ ......+++ -+..+.++..+.++-.++.+....|.++..+.++..
T Consensus 565 ~~ak~lq~~~~~v~q~a~~e~ke~P~~~~le~~~~~r~aI~~v~~~~s~g~~k~Gqr~~~~eta~~lf~~ 634 (865)
T KOG2152|consen 565 RTAKALQSICKKVHQFAEEEDKEDPFCFDLEDLGPCRWAINLVSQDNSLGQKKLGQRDGKDETALQLFLS 634 (865)
T ss_pred HHHHHHhHHHHHHhhccccccccCchhHhhhhccchhhhhhccccchhhhhhhhccccccchHHHHHHHh
Confidence 333322 111111221 012223444555555556665556777777776543
No 466
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=26.98 E-value=56 Score=40.45 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=24.9
Q ss_pred CccCCCCcccCCCceeccCccc-----ccHHHHHHHHH--hCCCCCCCCCcccCC
Q 037121 279 DFRCPISLELMTDPVTVSTGQT-----YDRSSIQKWLK--AGNMLCPKTGEKLTN 326 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv~~~cght-----~~r~cI~~w~~--~~~~~CP~c~~~l~~ 326 (683)
.+.||-|+........-.||.. +|..|=.+--. .+...||.|+.++..
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~ 721 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTP 721 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccc
Confidence 4778888775544322347743 35555111000 012379999887644
No 467
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=26.92 E-value=5.3e+02 Score=24.92 Aligned_cols=72 Identities=21% Similarity=0.222 Sum_probs=45.5
Q ss_pred CCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhh--cCcHHHHHHHHccCCChhHHHHHHHHHHHhhCC
Q 037121 502 PKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLD--AGTVPLLADILASSNRTELITDSLAVLANLAED 575 (683)
Q Consensus 502 ~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~--~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~ 575 (683)
.-.+|.+++=|.+.+..-.--|......|... ++..+++- ...|.+|-.-| ++.++++...++.+|..|+.+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~-~~~~kilPvlPqLI~plk~AL-~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLER-GGGEKILPVLPQLIIPLKRAL-NTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHh
Confidence 34566667766665555555666666666555 22223322 23455555556 677999999999999999653
No 468
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=26.25 E-value=40 Score=28.44 Aligned_cols=38 Identities=24% Similarity=0.531 Sum_probs=28.5
Q ss_pred CccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 279 DFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
.-.|-+|..-...| |+.||..|-.+ ...|..|+..+.+
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAYk-----kGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAYK-----KGICAMCGKKILD 81 (90)
T ss_pred CccccccccccccC-----CCccChhhhcc-----cCcccccCCeecc
Confidence 44799998766554 88999999442 5689999998743
No 469
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.24 E-value=64 Score=27.98 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=20.1
Q ss_pred CCCCccCCCCcccC----CCceecc-CcccccHHH
Q 037121 276 NPEDFRCPISLELM----TDPVTVS-TGQTYDRSS 305 (683)
Q Consensus 276 ~~~~f~CpIc~~~m----~dPv~~~-cght~~r~c 305 (683)
+-....||-|+.-| ++|++.| ||.+|=++.
T Consensus 6 LGtKridPetg~KFYDLNrdPiVsPytG~s~P~s~ 40 (129)
T COG4530 6 LGTKRIDPETGKKFYDLNRDPIVSPYTGKSYPRSY 40 (129)
T ss_pred ccccccCccccchhhccCCCccccCcccccchHHH
Confidence 34456788887665 6787765 888776543
No 470
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=26.18 E-value=32 Score=33.80 Aligned_cols=16 Identities=31% Similarity=0.733 Sum_probs=11.4
Q ss_pred CCccCCCCcccCCCce
Q 037121 278 EDFRCPISLELMTDPV 293 (683)
Q Consensus 278 ~~f~CpIc~~~m~dPv 293 (683)
--|.|++|+.++..|+
T Consensus 259 ~GfvCsVCLsvfc~p~ 274 (296)
T COG5242 259 LGFVCSVCLSVFCRPV 274 (296)
T ss_pred EeeehhhhheeecCCc
Confidence 3578888888776663
No 471
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=26.08 E-value=4.7e+02 Score=28.72 Aligned_cols=74 Identities=12% Similarity=0.121 Sum_probs=44.9
Q ss_pred HhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Q 037121 416 VESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLT 489 (683)
Q Consensus 416 ~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls 489 (683)
....++..|+.++.+.|+.-|...-++|.++-..-.+...++.......+...+..+...-.....+.++.++-
T Consensus 130 i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii 203 (409)
T PF01603_consen 130 IDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSII 203 (409)
T ss_dssp S-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHH
Confidence 44556788999999999999999999999876544443333334445555555554333333444444554443
No 472
>KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton]
Probab=26.07 E-value=36 Score=33.95 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=38.0
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHH---HHHHHhCCCCCCCCCccc
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSI---QKWLKAGNMLCPKTGEKL 324 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI---~~w~~~~~~~CP~c~~~l 324 (683)
++..++.|+-|.+.|.-|+--.|....+..-| -++|...++.|.+|.+|+
T Consensus 179 evk~eLyClrChD~mgipiCgaC~rpIeervi~amgKhWHveHFvCa~CekPF 231 (332)
T KOG2272|consen 179 EVKGELYCLRCHDKMGIPICGACRRPIEERVIFAMGKHWHVEHFVCAKCEKPF 231 (332)
T ss_pred hhccceeccccccccCCcccccccCchHHHHHHHhccccchhheeehhcCCcc
Confidence 67889999999999999988788776665555 233333488999998885
No 473
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=25.97 E-value=2.7e+02 Score=29.80 Aligned_cols=104 Identities=13% Similarity=0.068 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC------C-CHHHHHHHHHHHHhhccC
Q 037121 377 LMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS------P-DQCVQENAVAALLKLSKH 449 (683)
Q Consensus 377 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s------~-d~~~q~~A~~aL~nLs~~ 449 (683)
.....+.+.+.+.+...+..|+..|+.-.. -.-.+|.++.++.. . |.......+.+...|..+
T Consensus 178 ~yf~~It~a~~~~~~~~r~~aL~sL~tD~g----------l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N 247 (343)
T cd08050 178 LYFEEITEALVGSNEEKRREALQSLRTDPG----------LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDN 247 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhccCCC----------chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcC
Confidence 344556666666666666666644433111 12356777777754 2 566666667777777777
Q ss_pred CchhhHHhhcCcHHHHHHHHcC---------CCCHHHHHHHHHHHHHhcc
Q 037121 450 TSGKKVIVESGGLKVILKVLKS---------GLSLEARQIAAATLFYLTS 490 (683)
Q Consensus 450 ~~~r~~i~~~g~i~~Lv~lL~~---------~~~~e~~~~Aa~~L~~Ls~ 490 (683)
+.-.....=.-.++.++.++-. .....+|+.|+.+|..++.
T Consensus 248 ~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~ 297 (343)
T cd08050 248 PNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR 297 (343)
T ss_pred CCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 6654333322277888876632 1246789999999999985
No 474
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=25.84 E-value=3e+02 Score=24.72 Aligned_cols=70 Identities=11% Similarity=0.123 Sum_probs=44.8
Q ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHhhC--ChhhHHHHHhcCC-hHHHHHhhcc-----CC--ChHHHHHHHHHHHHH
Q 037121 545 TVPLLADILASSNRTELITDSLAVLANLAE--DIQGTSTILKTSA-LPVIIGLLQT-----LT--SRAGKEYCVSILLSL 614 (683)
Q Consensus 545 ~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~--~~~~~~~i~~~g~-i~~Lv~lL~~-----~~--s~~~ke~A~~~L~~L 614 (683)
+++.|.+-| ++.++.+.-+||.+|..||. ++..+.++.+.-. |..+..+-.. |. ...+++.|-.++..+
T Consensus 39 i~d~L~kRL-~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 39 LLEYLLKRL-KRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHh-cCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 456688888 66778898999999999984 5566666655433 5555554431 11 233666666665544
Q ss_pred h
Q 037121 615 C 615 (683)
Q Consensus 615 ~ 615 (683)
.
T Consensus 118 f 118 (122)
T cd03572 118 F 118 (122)
T ss_pred h
Confidence 4
No 475
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=24.99 E-value=4.7e+02 Score=22.91 Aligned_cols=89 Identities=24% Similarity=0.384 Sum_probs=55.3
Q ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHH-hhccCCChHH-HHHHHHHHHHHhcCC-h--
Q 037121 545 TVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIG-LLQTLTSRAG-KEYCVSILLSLCSNA-R-- 619 (683)
Q Consensus 545 ~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~-lL~~~~s~~~-ke~A~~~L~~L~~~~-~-- 619 (683)
.+|.+.+.|..+..++.+..+..++..|+....-.. ..+..+++ ++.+. .+.. ...++.+|..++.+. +
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~-----~~l~~l~~~i~~~~-~~~~~~~~~l~~L~~l~q~q~~~~ 80 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSD-----EVLNALMESILKNW-TQETVQRQALICLIVLCQSQENVD 80 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcH-----HHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHcccccc
Confidence 456677777436678999999999999986432222 23344555 44443 3333 377888888888654 1
Q ss_pred ---HHHHHHHhcCCCcHHHHHHh
Q 037121 620 ---EEVTASLAKDPSLMNSLYSL 639 (683)
Q Consensus 620 ---~~~~~~l~~~~g~i~~L~~L 639 (683)
....+.+.+-.++...|.++
T Consensus 81 ~lp~~~~~~l~~~~~l~~~L~~l 103 (121)
T PF12397_consen 81 SLPRKVFKALLKLPDLIELLSEL 103 (121)
T ss_pred cCCHHHHHHHHcCccHHHHHHHH
Confidence 33556666645556666666
No 476
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=24.81 E-value=3.7e+02 Score=22.10 Aligned_cols=57 Identities=7% Similarity=0.035 Sum_probs=42.8
Q ss_pred hhhhHHHHHHHHhhhHHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHcccCc
Q 037121 51 QRRNAREAIRQIGILLIFFEEIRDRGLNLSDLVVLCFSELHLTFQKVQFLMEDCTREG 108 (683)
Q Consensus 51 ~k~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~~ 108 (683)
-++|=..|+.++.-+.|+++.|...+ -+.+........-.---++|+.|+...-..|
T Consensus 3 v~~~r~~Li~~v~~v~~ilD~L~~~~-Vit~e~~~~I~a~~T~~~kar~Lld~l~~kG 59 (82)
T cd08330 3 VDQHREALIARVTNVDPILDKLHGKK-VITQEQYSEVRAEKTNQEKMRKLFSFVRSWG 59 (82)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHCC-CCCHHHHHHHHcCCCcHHHHHHHHHHHHccC
Confidence 57788899999999999999999655 4677666666655555678888887754234
No 477
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=24.71 E-value=38 Score=25.64 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=19.4
Q ss_pred CccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 279 DFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
.|.||.|...+.-|--.. |. .-.||.|+..+.
T Consensus 2 ~~~CP~CG~~iev~~~~~-Ge--------------iV~Cp~CGaele 33 (54)
T TIGR01206 2 QFECPDCGAEIELENPEL-GE--------------LVICDECGAELE 33 (54)
T ss_pred ccCCCCCCCEEecCCCcc-CC--------------EEeCCCCCCEEE
Confidence 478999988664331111 22 236899988764
No 478
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=24.65 E-value=1.1e+03 Score=27.00 Aligned_cols=132 Identities=20% Similarity=0.176 Sum_probs=67.8
Q ss_pred hHHHHhhcCC----CCHHHHHHHHHHHHhhcc----CCchhhHHhhcCcHHHHHHHHcCC---CCHHHHHHHHHHHHHhc
Q 037121 421 IPPLLNLLSS----PDQCVQENAVAALLKLSK----HTSGKKVIVESGGLKVILKVLKSG---LSLEARQIAAATLFYLT 489 (683)
Q Consensus 421 i~~Lv~lL~s----~d~~~q~~A~~aL~nLs~----~~~~r~~i~~~g~i~~Lv~lL~~~---~~~e~~~~Aa~~L~~Ls 489 (683)
+..+..++.+ ....+...|+-++++|.. +.+.+...+....++.+...|... .+.+.+..+..+|.|+-
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 3455556654 345566666666666542 222111122233455555555431 13333444555555553
Q ss_pred cCchhHHHhhccCCChHHHHHhhhc---CCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHcc-CCChhHHHHH
Q 037121 490 SVKGYRKLIGETPKAIPALVKLIEE---GTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILAS-SNRTELITDS 565 (683)
Q Consensus 490 ~~~~~~~~i~~~~g~i~~Lv~lL~~---~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~-~~~~~~~~~a 565 (683)
. ...++.|...+.. .+..++..|++||..++..... .+-+.|+.++.+ ..+.+++..|
T Consensus 475 ~-----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~-------~v~~~l~~i~~n~~e~~EvRiaA 536 (574)
T smart00638 475 H-----------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR-------KVQEVLLPIYLNRAEPPEVRMAA 536 (574)
T ss_pred C-----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch-------HHHHHHHHHHcCCCCChHHHHHH
Confidence 2 4456666666652 2357888999999987643221 234456777633 2355666555
Q ss_pred HHHHH
Q 037121 566 LAVLA 570 (683)
Q Consensus 566 l~iL~ 570 (683)
+.+|.
T Consensus 537 ~~~lm 541 (574)
T smart00638 537 VLVLM 541 (574)
T ss_pred HHHHH
Confidence 55443
No 479
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=24.59 E-value=38 Score=29.48 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=15.2
Q ss_pred Cceec---cCcccccHHHHHHHHHh
Q 037121 291 DPVTV---STGQTYDRSSIQKWLKA 312 (683)
Q Consensus 291 dPv~~---~cght~~r~cI~~w~~~ 312 (683)
.||-+ +|+ |+||.|+++|..-
T Consensus 64 HPVFiAQHATa-tCCRgCL~KWH~I 87 (111)
T PF13811_consen 64 HPVFIAQHATA-TCCRGCLEKWHGI 87 (111)
T ss_pred CCeeeecCCCc-cchHHHHHHHhCC
Confidence 57755 343 5799999999764
No 480
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.57 E-value=3.7e+02 Score=32.08 Aligned_cols=174 Identities=20% Similarity=0.280 Sum_probs=0.0
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHH-HhhccCCchhhHHhhcCcHHH--------HHHHHcCCCCHHHHHHHHHHHHHhccC
Q 037121 421 IPPLLNLLSSPDQCVQENAVAAL-LKLSKHTSGKKVIVESGGLKV--------ILKVLKSGLSLEARQIAAATLFYLTSV 491 (683)
Q Consensus 421 i~~Lv~lL~s~d~~~q~~A~~aL-~nLs~~~~~r~~i~~~g~i~~--------Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~ 491 (683)
+|.++.+|.++...+-..|+.++ .+|...+.+...|..++-+.+ +++.++.+ ...--+..+.++..+-..
T Consensus 500 ~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p-~~~EneylmKaImRii~i 578 (960)
T KOG1992|consen 500 LPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLP-GKAENEYLMKAIMRIISI 578 (960)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCC-cccccHHHHHHHHHHHHh
Q ss_pred chhHHHhhccCCChHHHHHhhhc---------CCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHH
Q 037121 492 KGYRKLIGETPKAIPALVKLIEE---------GTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELI 562 (683)
Q Consensus 492 ~~~~~~i~~~~g~i~~Lv~lL~~---------~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~ 562 (683)
.+....=.. +..+..|.+++.. -+.-.-+..+..+...|..+.....-.+...+|.+-.+| ..+-.+..
T Consensus 579 ~~~~i~p~~-~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il-~eDI~Efi 656 (960)
T KOG1992|consen 579 LQSAIIPHA-PELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTIL-SEDIQEFI 656 (960)
T ss_pred CHHhhhhhh-hHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_pred HHHHHHHHHhhCChhh--------------HHHHHhcCC-hHHHHHhhcc
Q 037121 563 TDSLAVLANLAEDIQG--------------TSTILKTSA-LPVIIGLLQT 597 (683)
Q Consensus 563 ~~al~iL~nLa~~~~~--------------~~~i~~~g~-i~~Lv~lL~~ 597 (683)
-.++.+|+.|.....+ ...+++..| ||.++.+++.
T Consensus 657 PYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~a 706 (960)
T KOG1992|consen 657 PYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQA 706 (960)
T ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHH
No 481
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=24.47 E-value=9.1e+02 Score=26.04 Aligned_cols=176 Identities=14% Similarity=0.188 Sum_probs=97.2
Q ss_pred cCCCCHHHHHHHHHHHHhhccCCch---hhHHhhcCcHHHHHHHHcC----------CCCHHHHHHHHHHHHHhccCchh
Q 037121 428 LSSPDQCVQENAVAALLKLSKHTSG---KKVIVESGGLKVILKVLKS----------GLSLEARQIAAATLFYLTSVKGY 494 (683)
Q Consensus 428 L~s~d~~~q~~A~~aL~nLs~~~~~---r~~i~~~g~i~~Lv~lL~~----------~~~~e~~~~Aa~~L~~Ls~~~~~ 494 (683)
|.+.+..-+..|...|.+.-...++ ...+ ..-++.+++.++. +.+.++..+|..+|..+..+.+-
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l--~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i 79 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQAL--QDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEI 79 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHH
Confidence 4456667777888777775433333 3333 2235555555432 12556778888888888776665
Q ss_pred HHHhhccCC--ChHHHHHhhhcC--CHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHc---c-CCChhHHHHHH
Q 037121 495 RKLIGETPK--AIPALVKLIEEG--TDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILA---S-SNRTELITDSL 566 (683)
Q Consensus 495 ~~~i~~~~g--~i~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~---~-~~~~~~~~~al 566 (683)
...+-.... .+...+..+.++ +..+...+++.|.. +....++.....+..++..+. + -++..+..+.+
T Consensus 80 ~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~----Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL 155 (372)
T PF12231_consen 80 VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD----QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERL 155 (372)
T ss_pred HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHH
Confidence 555443111 233344444332 33455555555543 223344555556666666652 2 24677889999
Q ss_pred HHHHHhhC-ChhhHHHHHhc-CC-hHHHHH-hhccCCChHHHHHHHHHHHHH
Q 037121 567 AVLANLAE-DIQGTSTILKT-SA-LPVIIG-LLQTLTSRAGKEYCVSILLSL 614 (683)
Q Consensus 567 ~iL~nLa~-~~~~~~~i~~~-g~-i~~Lv~-lL~~~~s~~~ke~A~~~L~~L 614 (683)
.++.+|.. .|+ .+.+. +- ++.++. ++.+ ....+..|..++..+
T Consensus 156 ~i~~~ll~q~p~---~M~~~~~~W~~~l~~~l~~~--~k~ir~~a~~l~~~~ 202 (372)
T PF12231_consen 156 NIYKRLLSQFPQ---QMIKHADIWFPILFPDLLSS--AKDIRTKAISLLLEA 202 (372)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHH
Confidence 99999975 332 33332 22 666666 5544 455666565555443
No 482
>TIGR00270 conserved hypothetical protein TIGR00270.
Probab=24.39 E-value=2.7e+02 Score=26.04 Aligned_cols=60 Identities=23% Similarity=0.301 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHhhhcCChhHHHHHHHH---HHHHhhhcC-CCCCChHHHHHHHHhcCCCC
Q 037121 148 EVKELVDLVAKQARKAKFELDKEDERAMKRV---LSILNYFEK-GIEPDSGFMTWVLDYLEIKS 207 (683)
Q Consensus 148 ev~e~v~l~~~~~~~a~~~~~~~~~~~~~~~---~~~l~~~~~-~~~~~~~~l~~~~~~l~l~~ 207 (683)
+..+.++.+-..+++++.....+.+++++.+ .+.+...++ ...|+.+.+.++++.||++-
T Consensus 62 ~~~~l~~~~g~~Ir~~Re~~glSqeeLA~~lgvs~s~IsriE~G~~~Ps~~~l~kLa~~Lgvsl 125 (154)
T TIGR00270 62 TTEELVEDYGIIIRREREKRGWSQEQLAKKIQEKESLIKKIENAEIEPEPKVVEKLEKLLKIKL 125 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCH
Confidence 3445555566667777777778888888876 355655565 47889999999999999863
No 483
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=24.38 E-value=43 Score=21.24 Aligned_cols=9 Identities=22% Similarity=0.397 Sum_probs=5.1
Q ss_pred cCCCCcccC
Q 037121 281 RCPISLELM 289 (683)
Q Consensus 281 ~CpIc~~~m 289 (683)
.||-|....
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 466665554
No 484
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=24.37 E-value=2.3e+02 Score=23.38 Aligned_cols=59 Identities=14% Similarity=0.322 Sum_probs=42.1
Q ss_pred hhhhHHHHHHHH--hhhHHhHHHHHhcCCCCCHHHHHHHHH-HHHHHHHHHHHHHHcccCcch
Q 037121 51 QRRNAREAIRQI--GILLIFFEEIRDRGLNLSDLVVLCFSE-LHLTFQKVQFLMEDCTREGAK 110 (683)
Q Consensus 51 ~k~~~~~l~r~~--~ll~~lleel~~~~~~~~~~~~~~l~~-L~~~l~~ak~Ll~~c~~~~Sk 110 (683)
+|++=..|++.+ ..|.++|++|...+. +...-...+.. -....++|+.|+.+...+|+.
T Consensus 2 ~~~~r~~~i~~l~~~~i~~llD~Ll~~~V-l~~~E~e~i~~~~~t~~dkar~Lid~v~~KG~~ 63 (83)
T cd08325 2 LKEKRVKFIESVGKGVINGLLDDLLEKNV-LNEEEMEKIKEENNTIMDKARVLVDSVTEKGQE 63 (83)
T ss_pred ccchHHHHHHHhhHhhHHHHHHHHHHcCC-CCHHHHHHHHhccCCHHHHHHHHHHHHHHHhHH
Confidence 466667788877 589999999997764 45554444433 444689999999998856543
No 485
>PF15616 TerY-C: TerY-C metal binding domain
Probab=24.35 E-value=31 Score=31.26 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=31.9
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
++...-.||-|....---+- .||+.+|-. ..+..+||-|++...
T Consensus 73 eL~g~PgCP~CGn~~~fa~C-~CGkl~Ci~------g~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 73 ELIGAPGCPHCGNQYAFAVC-GCGKLFCID------GEGEVTCPWCGNEGS 116 (131)
T ss_pred HhcCCCCCCCCcChhcEEEe-cCCCEEEeC------CCCCEECCCCCCeee
Confidence 45555789999988765443 799999853 234679999998653
No 486
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=24.28 E-value=4.8e+02 Score=23.90 Aligned_cols=72 Identities=19% Similarity=0.148 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcC-chhhHHHHhcCChHH-HHhhcCC---CCHHHHHHHHHHHHhhcc
Q 037121 377 LMSRFLARRLFF-GTNEEKNKAAYEIRLLAKSN-IFNRSCIVESGAIPP-LLNLLSS---PDQCVQENAVAALLKLSK 448 (683)
Q Consensus 377 ~~i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~-~~~r~~i~~~G~i~~-Lv~lL~s---~d~~~q~~A~~aL~nLs~ 448 (683)
..+..|-++|.+ .++.++..|+..|-.+.+.. ......++..+++.- |+.++.. .+..++...+..+...+.
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 356777788875 48889999999999888743 345667777889986 9999863 346888888888887763
No 487
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=24.24 E-value=11 Score=39.37 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=20.9
Q ss_pred CccCCCCcccCCCceeccC---c--ccccHHHHHHHHHhCCCCCCCCCcc
Q 037121 279 DFRCPISLELMTDPVTVST---G--QTYDRSSIQKWLKAGNMLCPKTGEK 323 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv~~~c---g--ht~~r~cI~~w~~~~~~~CP~c~~~ 323 (683)
.-.||+|+..-.--++..- | +-+|..|=..|--. ...||.|+..
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~-R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV-RIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec-CCCCcCCCCC
Confidence 4699999987655555443 4 46788888888554 6689999864
No 488
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=24.19 E-value=35 Score=23.08 Aligned_cols=10 Identities=30% Similarity=0.584 Sum_probs=7.6
Q ss_pred CCCCCCCCcc
Q 037121 314 NMLCPKTGEK 323 (683)
Q Consensus 314 ~~~CP~c~~~ 323 (683)
...||.|+.+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 4589999864
No 489
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=24.18 E-value=3.5e+02 Score=23.49 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=48.3
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhH---hcC---CHHHHHHHHHHHHHH
Q 037121 588 LPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLT---TDG---TSQARKKARSLIKIL 658 (683)
Q Consensus 588 i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll---~~g---~~~~k~~A~~lL~~l 658 (683)
+..|.+-|.+. ++..+-.|+.+|-.++.++++.....+.. ......++.+. ..| +..+|.++..++...
T Consensus 39 ~~~l~kRl~~~-~~~~~lkaL~lLe~lvkN~g~~f~~~i~~-~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 39 VDAIKKRINNK-NPHVVLKALTLLEYCVKNCGERFHQEVAS-NDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHhcCC-cHHHHHHHHHHHHHHHHHccHHHHHHHHH-hHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 44566666666 88999999999999999988887777765 43444443321 122 667899998888754
No 490
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=24.12 E-value=3.4e+02 Score=21.90 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=48.9
Q ss_pred hhhhhHHHHHHHHhhhHHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHcccCcchhhhHH
Q 037121 50 TQRRNAREAIRQIGILLIFFEEIRDRGLNLSDLVVLCFSELHLTFQKVQFLMEDCTREGAKLWVLM 115 (683)
Q Consensus 50 ~~k~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~~Sklyll~ 115 (683)
..+++...|++.+..+.++++.|...+. +++.-..-+......-++++.|+..-.++|++.|-.+
T Consensus 3 ~L~~~r~~Lv~~l~~~~~ild~L~~~~v-lt~~e~e~I~~~~t~~~k~~~LLd~l~~kg~~a~~~F 67 (85)
T PF00619_consen 3 LLRKNRQELVEDLDDLDDILDHLLSRGV-LTEEEYEEIRSEPTRQDKARKLLDILKRKGPEAFDIF 67 (85)
T ss_dssp HHHHTHHHHHHHSSHHHHHHHHHHHTTS-SSHHHHHHHHTSSSHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHhHHHHHHHhCcHHHHHHHHHHCCC-CCHHHHHHHHccCChHHHHHHHHHHHHHHCHHHHHHH
Confidence 4678899999999989999999996664 6776666666666677889999888544676654433
No 491
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=24.06 E-value=2.5e+02 Score=29.87 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhccCchhHHHhhc-cCCChHHHHHhhhcCC---HHHHHHHHHHHHHcccCCchhhhH-------hhcC
Q 037121 476 EARQIAAATLFYLTSVKGYRKLIGE-TPKAIPALVKLIEEGT---DCGKKNAVVAIFGLLLSQGNHQKV-------LDAG 544 (683)
Q Consensus 476 e~~~~Aa~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~~---~~~~~~A~~aL~nLs~~~~n~~~i-------v~~g 544 (683)
.+|-.|.+++.++.........+.. .++.+..|++++.-++ ..++..|+.+|..++.+..-...+ +.+|
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 3466677777777776666666665 2349999999997653 578889999999998865433333 3446
Q ss_pred cHHHHHHH
Q 037121 545 TVPLLADI 552 (683)
Q Consensus 545 ~v~~Lv~l 552 (683)
++..+++-
T Consensus 317 iL~~llR~ 324 (329)
T PF06012_consen 317 ILPQLLRK 324 (329)
T ss_pred cHHHHHHH
Confidence 66666554
No 492
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=23.71 E-value=4.2e+02 Score=24.32 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=52.0
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHH-HHHhHhc---CCHHHHHHHHHHHHHHHHh
Q 037121 588 LPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNS-LYSLTTD---GTSQARKKARSLIKILHKF 661 (683)
Q Consensus 588 i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~-L~~Ll~~---g~~~~k~~A~~lL~~l~~~ 661 (683)
+..|.+=|.++.++.+.-.|+.+|-.+..+.+......+.. .+.+.- |+.++.. ....+|.+...+++.....
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eias-k~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAK-KDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHH-HHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 45565644433367788889999888888887777777776 567776 8888863 2357888888888776654
No 493
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=23.11 E-value=83 Score=24.05 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=14.1
Q ss_pred CCCCCCCCCcccCCCCCCCc
Q 037121 313 GNMLCPKTGEKLTNTELLPN 332 (683)
Q Consensus 313 ~~~~CP~c~~~l~~~~l~pn 332 (683)
.|.+||+|++.++.+...-.
T Consensus 7 PH~HC~VCg~aIp~de~~CS 26 (64)
T COG4068 7 PHRHCVVCGKAIPPDEQVCS 26 (64)
T ss_pred CCccccccCCcCCCccchHH
Confidence 37789999988876554333
No 494
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=22.81 E-value=21 Score=37.35 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=30.0
Q ss_pred CccCCCCcccCCCceecc----Cc--ccccHHHHHHHHHhCCCCCCCCCcc
Q 037121 279 DFRCPISLELMTDPVTVS----TG--QTYDRSSIQKWLKAGNMLCPKTGEK 323 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv~~~----cg--ht~~r~cI~~w~~~~~~~CP~c~~~ 323 (683)
.-.||+|+..-.--++.. -| +-+|.-|=.+|--. ...||.|+..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~-R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV-RVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc-CccCCCCCCC
Confidence 459999998754333322 34 45677787788654 6789999864
No 495
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=22.54 E-value=9.9e+02 Score=25.76 Aligned_cols=135 Identities=14% Similarity=0.106 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHhhccCCchhhHHhhc---CcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHH
Q 037121 432 DQCVQENAVAALLKLSKHTSGKKVIVES---GGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPAL 508 (683)
Q Consensus 432 d~~~q~~A~~aL~nLs~~~~~r~~i~~~---g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~L 508 (683)
|..+-.+|+.+|+.+-.+++--..+-.. -.+...+..+.++... +.-+...|+-|+.. .....+.. ...+..+
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~--K~i~~~~l~~ls~Q-~f~~~~~~-~~~~~~l 134 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSP--KSICTHYLWCLSDQ-KFSPKIMT-SDRVERL 134 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcC-CCCCcccc-hhhHHHH
Confidence 6678889999999887665543333311 1355556666554221 22333333334332 12222322 3344444
Q ss_pred HHhhhc-----CCHHHHHHHHHHHHHcccCCchhhhHhhc--CcHHHHHHHHccCCChhHHHHHHHHHHHhh
Q 037121 509 VKLIEE-----GTDCGKKNAVVAIFGLLLSQGNHQKVLDA--GTVPLLADILASSNRTELITDSLAVLANLA 573 (683)
Q Consensus 509 v~lL~~-----~~~~~~~~A~~aL~nLs~~~~n~~~iv~~--g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa 573 (683)
+..+.+ ++..+...++.++.+|...... .|++. --++.++..+ -+....+...|..++..++
T Consensus 135 ~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~--~M~~~~~~W~~~l~~~l-~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 135 LAALHNIKNRFPSKSIISERLNIYKRLLSQFPQ--QMIKHADIWFPILFPDL-LSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-hhcchHHHHHHHHHHHHHH
Confidence 444332 3456777888888888764332 22222 2456666666 4455667776666666554
No 496
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=22.47 E-value=50 Score=41.10 Aligned_cols=50 Identities=18% Similarity=0.374 Sum_probs=35.1
Q ss_pred CCccCCCCccc--CCCcee-ccCcccccHHHHHHHHHh---------CCCCCCCCCcccCCC
Q 037121 278 EDFRCPISLEL--MTDPVT-VSTGQTYDRSSIQKWLKA---------GNMLCPKTGEKLTNT 327 (683)
Q Consensus 278 ~~f~CpIc~~~--m~dPv~-~~cght~~r~cI~~w~~~---------~~~~CP~c~~~l~~~ 327 (683)
.+-.|-||... -.-|.+ +.|||.|--.|..+-++. |-..||.|.+++.+.
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 45667787632 345654 789999988887766654 335799999887654
No 497
>PRK11595 DNA utilization protein GntX; Provisional
Probab=22.39 E-value=58 Score=32.58 Aligned_cols=39 Identities=13% Similarity=0.078 Sum_probs=26.6
Q ss_pred cCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 281 RCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 281 ~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
.|++|...+..+ .+.+|..|...|-.- ...||.|+.+..
T Consensus 7 ~C~~C~~~~~~~-----~~~lC~~C~~~l~~~-~~~C~~Cg~~~~ 45 (227)
T PRK11595 7 LCWLCRMPLALS-----HWGICSVCSRALRTL-KTCCPQCGLPAT 45 (227)
T ss_pred cCccCCCccCCC-----CCcccHHHHhhCCcc-cCcCccCCCcCC
Confidence 699999876322 234788887776432 357999997643
No 498
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=22.31 E-value=59 Score=29.19 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=8.7
Q ss_pred CCCccCCCCcccCC
Q 037121 277 PEDFRCPISLELMT 290 (683)
Q Consensus 277 ~~~f~CpIc~~~m~ 290 (683)
-....||-|+.-|.
T Consensus 7 GtKr~Cp~cg~kFY 20 (129)
T TIGR02300 7 GTKRICPNTGSKFY 20 (129)
T ss_pred CccccCCCcCcccc
Confidence 34567887766554
No 499
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=22.03 E-value=6.1e+02 Score=26.26 Aligned_cols=141 Identities=13% Similarity=0.187 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCcchhhhHHhhHHHHHHHHHHHHHHHHHhhcCCCCCcccchhHHHHHHHHHHHHHH
Q 037121 83 VVLCFSELHLTFQKVQFLMEDCTREGAKLWVLMKSQFIATQFRVLIRAIATALDVFPLDTVDICGEVKELVDLVAKQARK 162 (683)
Q Consensus 83 ~~~~l~~L~~~l~~ak~Ll~~c~~~~Sklyll~~~~~i~~~f~~~~~~l~~~L~~lp~~~l~ls~ev~e~v~l~~~~~~~ 162 (683)
+..|=-++++++=..|-.+..=. |=| +.-+.|++.....|.+.++ ++.-++..+|++.-+
T Consensus 200 a~eW~lEvERVlPQLKVt~k~Da----kDW-----R~H~~QM~s~~~nIe~~~~-----------~~~~~Ldklh~eit~ 259 (384)
T KOG0972|consen 200 AIEWKLEVERVLPQLKVTLKQDA----KDW-----RLHLEQMNSMHKNIEQKVG-----------NVGPYLDKLHKEITK 259 (384)
T ss_pred HHHHHHHHHHhhhhheehhcccc----HHH-----HHHHHHHHHHHHHHHHhhc-----------chhHHHHHHHHHHHH
Confidence 45555555555555444443222 111 1225556666666655544 444567778888888
Q ss_pred hhhcCChhHHHHHHHHHHHHhhhcCCCCCChHHHHHHH--HhcCCCC----hHHHHHHHHHHHHHHHhhhcCC--ccchh
Q 037121 163 AKFELDKEDERAMKRVLSILNYFEKGIEPDSGFMTWVL--DYLEIKS----WSDCNSEIKFLEELVALECSDS--EEREV 234 (683)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~--~~l~l~~----~~~~~~E~~~l~~~~~~~~~~~--~~~~~ 234 (683)
+-.+....+.-+-..+..++++|..- ....++++.-- -..|+++ ..++-.|++.++.+++ +++.. ++.-.
T Consensus 260 ~LEkI~SREK~lNnqL~~l~q~fr~a-~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemE-e~G~~msDGapl 337 (384)
T KOG0972|consen 260 ALEKIASREKSLNNQLASLMQKFRRA-TDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEME-EQGAKMSDGAPL 337 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH-HhcccccCCchH
Confidence 88888888888888888888877521 11223443221 2255654 4556677888888887 44432 22333
Q ss_pred chHHHHHHHHh
Q 037121 235 PFLSSLVGFMS 245 (683)
Q Consensus 235 ~~~~~l~~ll~ 245 (683)
..|.+-+.-|+
T Consensus 338 vkIkqavsKLk 348 (384)
T KOG0972|consen 338 VKIKQAVSKLK 348 (384)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 500
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=22.00 E-value=6.9e+02 Score=31.14 Aligned_cols=90 Identities=13% Similarity=0.159 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcccchhHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHhhhcCCCCCChHHHHHH
Q 037121 120 IATQFRVLIRAIATALDVFPLDTVDICGEVKELVDLVAKQARKAKFELDKEDERAMKRVLSILNYFEKGIEPDSGFMTWV 199 (683)
Q Consensus 120 i~~~f~~~~~~l~~~L~~lp~~~l~ls~ev~e~v~l~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 199 (683)
.-.+++.-..+.++.|+.+--..+. ..|.++..+..-.|..+.+.+.+.+..++.+.+.+ +++|-.....|++.++.+
T Consensus 1420 ~~~~l~~~~ae~eq~~~~v~ea~~~-aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~-v~~Flt~~~adp~si~~v 1497 (1758)
T KOG0994|consen 1420 ADTQLRSKLAEAEQTLSMVREAKLS-ASEAQQSAQRALEQANASRSQMEESNRELRNLIQQ-VRDFLTQPDADPDSIEEV 1497 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHH
Confidence 4455556666666666666322222 24566666666666666666677777777665544 455666677899999999
Q ss_pred HHh---cCCCC-hHHH
Q 037121 200 LDY---LEIKS-WSDC 211 (683)
Q Consensus 200 ~~~---l~l~~-~~~~ 211 (683)
|++ +.|+. ++.+
T Consensus 1498 A~~vL~l~lp~tpeqi 1513 (1758)
T KOG0994|consen 1498 AEEVLALELPLTPEQI 1513 (1758)
T ss_pred HHHHHhccCCCCHHHH
Confidence 877 55554 4433
Done!