Query 037121
Match_columns 683
No_of_seqs 443 out of 3030
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 14:54:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xm9_A Plakophilin 1; armadill 100.0 2.4E-30 8.2E-35 287.0 22.1 283 378-663 3-363 (457)
2 3nmw_A APC variant protein; AR 100.0 1.2E-29 4.1E-34 270.5 24.3 272 392-669 47-343 (354)
3 3l6x_A Catenin delta-1; cateni 100.0 2.3E-29 7.9E-34 282.2 24.8 283 378-663 49-387 (584)
4 3nmz_A APC variant protein; pr 100.0 1.2E-28 4.1E-33 270.5 22.5 268 394-667 165-457 (458)
5 1xm9_A Plakophilin 1; armadill 100.0 3E-27 1E-31 262.0 27.2 284 376-665 43-454 (457)
6 3nmz_A APC variant protein; pr 100.0 9.5E-28 3.3E-32 263.4 22.1 284 375-660 68-408 (458)
7 3ul1_B Importin subunit alpha- 100.0 5.4E-27 1.8E-31 263.7 27.9 281 377-661 100-388 (510)
8 3now_A UNC-45 protein, SD10334 100.0 3.4E-27 1.2E-31 273.0 26.8 282 376-661 420-738 (810)
9 3tpo_A Importin subunit alpha- 100.0 1.1E-26 3.8E-31 262.5 29.2 281 376-660 118-406 (529)
10 3nmw_A APC variant protein; AR 100.0 1.4E-27 4.9E-32 254.5 18.9 244 377-623 73-341 (354)
11 3l6x_A Catenin delta-1; cateni 99.9 4.8E-26 1.6E-30 255.3 26.1 282 377-663 90-479 (584)
12 3now_A UNC-45 protein, SD10334 99.9 3.4E-26 1.2E-30 264.7 25.2 282 374-661 374-695 (810)
13 4b8j_A Importin subunit alpha- 99.9 1.9E-24 6.4E-29 243.9 31.1 281 377-661 117-401 (528)
14 3tpo_A Importin subunit alpha- 99.9 2.8E-24 9.6E-29 242.7 30.8 283 376-662 161-451 (529)
15 4hxt_A De novo protein OR329; 99.9 1.7E-24 5.8E-29 218.8 25.6 237 378-618 3-243 (252)
16 4db8_A Armadillo-repeat protei 99.9 6.4E-25 2.2E-29 222.8 21.2 236 378-617 13-252 (252)
17 3ul1_B Importin subunit alpha- 99.9 3.7E-24 1.3E-28 240.6 28.5 281 377-661 143-431 (510)
18 4b8j_A Importin subunit alpha- 99.9 1.2E-23 4E-28 237.4 32.7 279 376-660 73-358 (528)
19 4hxt_A De novo protein OR329; 99.9 4.8E-24 1.6E-28 215.5 26.1 241 419-665 2-246 (252)
20 2jdq_A Importin alpha-1 subuni 99.9 4.7E-23 1.6E-27 226.8 31.5 280 377-661 64-348 (450)
21 1wa5_B Importin alpha subunit; 99.9 2.4E-23 8.3E-28 235.0 29.2 279 377-661 130-413 (530)
22 1wa5_B Importin alpha subunit; 99.9 1E-22 3.5E-27 229.9 33.2 277 378-660 88-370 (530)
23 2jdq_A Importin alpha-1 subuni 99.9 2.2E-22 7.4E-27 221.4 31.1 280 377-662 107-392 (450)
24 4db8_A Armadillo-repeat protei 99.9 2.8E-23 9.7E-28 210.6 20.8 236 419-660 12-251 (252)
25 3tt9_A Plakophilin-2; cell adh 99.9 3.3E-23 1.1E-27 206.6 16.2 198 376-575 7-230 (233)
26 1jdh_A Beta-catenin; beta-cate 99.9 6.9E-22 2.3E-26 222.2 27.0 280 377-661 101-386 (529)
27 3tt9_A Plakophilin-2; cell adh 99.9 1.2E-22 4.2E-27 202.4 16.1 195 420-617 9-230 (233)
28 1jdh_A Beta-catenin; beta-cate 99.9 2.5E-22 8.4E-27 225.9 20.5 277 376-661 16-296 (529)
29 2z6h_A Catenin beta-1, beta-ca 99.9 4.4E-22 1.5E-26 230.2 22.5 276 377-661 14-293 (644)
30 2z6h_A Catenin beta-1, beta-ca 99.9 3E-21 1E-25 223.2 28.2 280 377-661 98-383 (644)
31 2z6g_A B-catenin; FULL-length, 99.9 2.9E-21 9.9E-26 227.6 23.8 272 378-661 116-390 (780)
32 3opb_A SWI5-dependent HO expre 99.9 1.6E-21 5.4E-26 221.6 20.5 283 375-661 374-729 (778)
33 4db6_A Armadillo repeat protei 99.9 5.9E-21 2E-25 188.0 21.2 197 416-616 9-209 (210)
34 4db6_A Armadillo repeat protei 99.9 5.7E-21 1.9E-25 188.1 20.4 194 378-574 13-209 (210)
35 2z6g_A B-catenin; FULL-length, 99.9 2E-20 6.7E-25 220.5 26.5 280 377-661 234-519 (780)
36 1xqr_A HSPBP1 protein; armadil 99.8 1.7E-18 5.8E-23 179.7 23.1 223 391-616 54-287 (296)
37 3opb_A SWI5-dependent HO expre 99.8 1.1E-18 3.8E-23 198.4 22.3 278 378-660 335-683 (778)
38 2kr4_A Ubiquitin conjugation f 99.8 1.4E-19 4.7E-24 151.4 6.0 72 275-347 10-81 (85)
39 3htk_C E3 SUMO-protein ligase 99.8 6E-19 2E-23 173.8 11.1 213 120-345 30-251 (267)
40 2kre_A Ubiquitin conjugation f 99.8 2E-19 6.8E-24 154.8 6.3 73 275-348 25-97 (100)
41 1wgm_A Ubiquitin conjugation f 99.8 2.8E-19 9.7E-24 153.3 7.1 74 275-349 18-92 (98)
42 1xqr_A HSPBP1 protein; armadil 99.8 5.4E-17 1.8E-21 168.4 22.3 184 432-619 53-241 (296)
43 2f42_A STIP1 homology and U-bo 99.8 7.1E-19 2.4E-23 166.1 7.0 76 275-350 102-177 (179)
44 1t1h_A Gspef-atpub14, armadill 99.7 2.4E-18 8.2E-23 141.8 6.4 74 275-348 4-77 (78)
45 2c2l_A CHIP, carboxy terminus 99.7 4.1E-17 1.4E-21 168.6 7.0 77 274-350 203-279 (281)
46 2yu4_A E3 SUMO-protein ligase 99.7 5.2E-17 1.8E-21 138.5 5.5 73 276-348 4-85 (94)
47 3ztg_A E3 ubiquitin-protein li 99.6 3.5E-15 1.2E-19 126.9 8.4 75 275-349 9-86 (92)
48 3grl_A General vesicular trans 99.5 1.3E-12 4.6E-17 145.0 25.8 278 377-660 21-342 (651)
49 3fl2_A E3 ubiquitin-protein li 99.5 3.3E-14 1.1E-18 128.0 5.3 69 276-344 49-118 (124)
50 2bay_A PRE-mRNA splicing facto 99.4 2.2E-14 7.4E-19 111.2 2.6 54 279-333 3-57 (61)
51 1z6u_A NP95-like ring finger p 99.4 9.9E-14 3.4E-18 128.7 5.3 68 276-343 75-143 (150)
52 3m62_A Ubiquitin conjugation f 99.4 3.3E-13 1.1E-17 155.1 9.4 73 275-348 887-960 (968)
53 2y43_A E3 ubiquitin-protein li 99.4 3.9E-13 1.3E-17 115.8 4.9 72 275-347 18-90 (99)
54 3lrq_A E3 ubiquitin-protein li 99.3 4.8E-13 1.7E-17 115.3 4.7 73 275-347 18-91 (100)
55 2csy_A Zinc finger protein 183 99.3 1E-12 3.6E-17 108.6 5.7 61 275-337 11-71 (81)
56 2ckl_A Polycomb group ring fin 99.3 8.4E-13 2.9E-17 115.6 4.2 68 275-343 11-83 (108)
57 2ecw_A Tripartite motif-contai 99.3 4.4E-13 1.5E-17 111.9 2.0 64 275-338 15-83 (85)
58 2egp_A Tripartite motif-contai 99.3 9.3E-14 3.2E-18 114.4 -2.8 64 275-338 8-77 (79)
59 3hct_A TNF receptor-associated 99.3 1.4E-12 4.8E-17 116.1 4.5 69 275-343 14-82 (118)
60 2djb_A Polycomb group ring fin 99.3 5.3E-12 1.8E-16 101.8 7.0 57 275-332 11-68 (72)
61 3l11_A E3 ubiquitin-protein li 99.3 7.6E-13 2.6E-17 117.3 2.1 69 275-343 11-86 (115)
62 2ecy_A TNF receptor-associated 99.3 3.7E-12 1.3E-16 100.8 5.7 55 275-329 11-65 (66)
63 2yur_A Retinoblastoma-binding 99.3 4.4E-12 1.5E-16 102.9 6.1 58 275-332 11-71 (74)
64 2ckl_B Ubiquitin ligase protei 99.3 1.5E-12 5.2E-17 123.1 3.8 71 275-345 50-122 (165)
65 2ecv_A Tripartite motif-contai 99.3 7.1E-13 2.4E-17 110.6 1.2 64 275-338 15-83 (85)
66 4ayc_A E3 ubiquitin-protein li 99.3 3.4E-12 1.2E-16 116.9 5.9 64 277-343 51-114 (138)
67 3grl_A General vesicular trans 99.3 5.9E-10 2E-14 123.9 24.8 277 378-656 61-390 (651)
68 1jm7_B BARD1, BRCA1-associated 99.3 9.8E-13 3.3E-17 116.9 1.8 70 275-347 18-88 (117)
69 1jm7_A BRCA1, breast cancer ty 99.2 4.1E-12 1.4E-16 112.0 3.7 68 277-344 19-88 (112)
70 3ltm_A Alpha-REP4; protein eng 99.2 6.3E-10 2.2E-14 109.0 19.3 190 418-664 18-207 (211)
71 3ltm_A Alpha-REP4; protein eng 99.2 6.5E-10 2.2E-14 108.9 18.6 186 378-618 20-205 (211)
72 1oyz_A Hypothetical protein YI 99.2 7.7E-10 2.6E-14 113.4 19.7 227 376-659 22-249 (280)
73 2ysl_A Tripartite motif-contai 99.2 1.5E-11 5.1E-16 99.4 5.1 55 275-329 16-72 (73)
74 1g25_A CDK-activating kinase a 99.2 1.2E-11 4E-16 97.6 4.3 55 278-332 2-61 (65)
75 2ysj_A Tripartite motif-contai 99.2 2.8E-11 9.7E-16 94.7 5.6 46 275-320 16-63 (63)
76 3ltj_A Alpharep-4; protein eng 99.2 1.4E-09 4.7E-14 105.7 18.8 184 377-615 14-197 (201)
77 3ng2_A RNF4, snurf, ring finge 99.1 2E-11 6.8E-16 98.0 3.9 58 275-333 6-70 (71)
78 3knv_A TNF receptor-associated 99.1 5.3E-12 1.8E-16 115.7 0.5 68 275-342 27-103 (141)
79 3hcs_A TNF receptor-associated 99.1 2E-11 6.9E-16 116.0 4.5 68 275-342 14-81 (170)
80 1rmd_A RAG1; V(D)J recombinati 99.1 2.7E-11 9.4E-16 107.4 5.0 68 275-342 19-87 (116)
81 3ltj_A Alpharep-4; protein eng 99.1 2.1E-09 7.1E-14 104.4 18.8 186 418-660 13-198 (201)
82 2ecj_A Tripartite motif-contai 99.1 1.2E-10 4.1E-15 89.4 5.0 46 275-320 11-58 (58)
83 2ct2_A Tripartite motif protei 99.1 2.2E-10 7.5E-15 96.0 7.0 53 275-327 11-69 (88)
84 2d8t_A Dactylidin, ring finger 99.1 7.5E-11 2.6E-15 94.7 3.8 51 275-326 11-61 (71)
85 2ea6_A Ring finger protein 4; 99.0 1.5E-10 5.1E-15 92.3 4.7 51 275-326 11-68 (69)
86 2xeu_A Ring finger protein 4; 99.0 7E-11 2.4E-15 92.7 2.3 54 278-332 2-62 (64)
87 1oyz_A Hypothetical protein YI 99.0 3.1E-08 1E-12 101.4 21.5 201 415-659 19-220 (280)
88 4fdd_A Transportin-1; heat rep 99.0 4.8E-09 1.6E-13 124.8 17.3 275 378-662 129-431 (852)
89 1e4u_A Transcriptional repress 99.0 3.2E-10 1.1E-14 92.4 4.8 55 275-329 7-65 (78)
90 2ect_A Ring finger protein 126 99.0 4.7E-10 1.6E-14 91.8 5.0 57 275-332 11-70 (78)
91 4fdd_A Transportin-1; heat rep 98.9 9.9E-09 3.4E-13 122.1 15.0 275 377-662 174-473 (852)
92 1ibr_B P95, importin beta-1 su 98.9 2.6E-08 9E-13 108.9 16.4 277 378-663 129-440 (462)
93 1chc_A Equine herpes virus-1 r 98.8 1.7E-09 5.7E-14 85.9 4.4 48 278-326 4-52 (68)
94 2ep4_A Ring finger protein 24; 98.8 3.6E-09 1.2E-13 85.5 6.4 51 275-326 11-64 (74)
95 2ecm_A Ring finger and CHY zin 98.8 2.3E-09 7.8E-14 81.2 4.3 47 278-325 4-54 (55)
96 2kiz_A E3 ubiquitin-protein li 98.8 6.2E-09 2.1E-13 82.8 6.9 50 276-326 11-63 (69)
97 1b3u_A Protein (protein phosph 98.8 1.9E-07 6.7E-12 105.3 22.1 228 376-616 163-392 (588)
98 4gmo_A Putative uncharacterize 98.8 4.2E-08 1.4E-12 113.5 15.6 192 420-615 35-257 (684)
99 1iym_A EL5; ring-H2 finger, ub 98.8 2.6E-09 8.9E-14 80.9 3.6 49 276-325 2-54 (55)
100 2ecn_A Ring finger protein 141 98.8 1.3E-09 4.5E-14 87.1 1.9 52 275-328 11-62 (70)
101 4ap4_A E3 ubiquitin ligase RNF 98.8 1.4E-09 4.8E-14 98.5 2.1 55 277-332 5-66 (133)
102 1bor_A Transcription factor PM 98.8 2E-09 6.7E-14 81.9 2.1 46 277-326 4-49 (56)
103 1b3u_A Protein (protein phosph 98.8 1.8E-07 6.2E-12 105.6 19.3 264 378-659 88-352 (588)
104 2l0b_A E3 ubiquitin-protein li 98.8 4.1E-09 1.4E-13 88.9 4.1 50 276-326 37-89 (91)
105 4gmo_A Putative uncharacterize 98.7 7E-08 2.4E-12 111.7 15.0 197 459-660 33-258 (684)
106 1x4j_A Ring finger protein 38; 98.7 4.9E-09 1.7E-13 84.9 3.7 49 277-326 21-72 (75)
107 1v87_A Deltex protein 2; ring- 98.7 1.1E-08 3.6E-13 90.2 5.0 50 277-326 23-94 (114)
108 2vgl_B AP-2 complex subunit be 98.7 1.3E-06 4.5E-11 99.3 23.3 263 376-658 120-417 (591)
109 4ic3_A E3 ubiquitin-protein li 98.6 7.9E-09 2.7E-13 83.4 1.4 46 276-326 21-67 (74)
110 2y1n_A E3 ubiquitin-protein li 98.6 2.7E-08 9.4E-13 104.6 5.3 50 278-327 331-380 (389)
111 2vgl_B AP-2 complex subunit be 98.5 8.7E-07 3E-11 100.8 16.6 258 379-661 51-312 (591)
112 4ap4_A E3 ubiquitin ligase RNF 98.5 1.6E-08 5.6E-13 91.4 1.4 56 276-332 69-131 (133)
113 2ecl_A Ring-box protein 2; RNF 98.4 1E-07 3.5E-12 78.3 4.0 48 278-326 14-76 (81)
114 2ecg_A Baculoviral IAP repeat- 98.4 6E-08 2.1E-12 78.4 2.5 46 276-326 22-68 (75)
115 1qgr_A Protein (importin beta 98.4 4.2E-06 1.4E-10 99.2 19.1 273 378-662 129-439 (876)
116 2bpt_A Importin beta-1 subunit 98.4 1.1E-06 3.8E-11 104.0 13.7 275 377-661 369-669 (861)
117 1wim_A KIAA0161 protein; ring 98.4 5.1E-08 1.7E-12 82.6 1.3 66 278-344 4-83 (94)
118 2vje_A E3 ubiquitin-protein li 98.4 1.6E-07 5.4E-12 73.3 3.9 48 277-325 6-56 (64)
119 1w63_A Adapter-related protein 98.4 2.9E-05 9.8E-10 88.7 24.0 255 375-660 140-414 (618)
120 3b2a_A TON_1937, putative unch 98.4 1.2E-05 4E-10 77.7 16.6 220 376-610 32-255 (265)
121 1ibr_B P95, importin beta-1 su 98.4 4.9E-06 1.7E-10 90.7 15.8 269 380-660 93-395 (462)
122 1qgr_A Protein (importin beta 98.3 9.4E-06 3.2E-10 96.1 19.1 273 377-662 172-481 (876)
123 2vje_B MDM4 protein; proto-onc 98.3 2.4E-07 8E-12 72.1 3.4 46 279-325 7-55 (63)
124 1u6g_C TIP120 protein, CAND1; 98.3 8.5E-07 2.9E-11 109.7 10.1 271 377-661 6-285 (1230)
125 1w63_A Adapter-related protein 98.3 3.2E-05 1.1E-09 88.4 21.8 255 375-660 105-379 (618)
126 3dpl_R Ring-box protein 1; ubi 98.3 4.8E-07 1.6E-11 78.0 4.7 47 278-325 36-100 (106)
127 2bpt_A Importin beta-1 subunit 98.3 2E-05 6.7E-10 93.2 20.3 273 378-662 135-442 (861)
128 2yho_A E3 ubiquitin-protein li 98.2 3E-07 1E-11 75.0 0.7 45 277-326 16-61 (79)
129 2qk2_A LP04448P; mini spindles 98.2 1E-05 3.5E-10 80.7 12.2 181 382-574 20-205 (242)
130 2ea5_A Cell growth regulator w 98.2 2E-06 6.9E-11 67.8 5.2 45 277-326 13-58 (68)
131 3t6p_A Baculoviral IAP repeat- 98.1 5.2E-07 1.8E-11 94.5 0.9 47 275-326 291-338 (345)
132 1u6g_C TIP120 protein, CAND1; 98.0 9E-06 3.1E-10 100.4 9.8 232 376-619 47-287 (1230)
133 2d8s_A Cellular modulator of i 98.0 8.9E-06 3.1E-10 66.2 6.4 51 276-326 12-70 (80)
134 2vgl_A Adaptor protein complex 98.0 0.00028 9.6E-09 80.5 20.6 258 375-660 144-433 (621)
135 2vgl_A Adaptor protein complex 98.0 0.0011 3.7E-08 75.6 25.0 257 375-659 109-397 (621)
136 4a0k_B E3 ubiquitin-protein li 97.9 1.6E-06 5.4E-11 75.9 0.3 46 279-325 48-111 (117)
137 1te4_A Conserved protein MTH18 97.8 2.4E-06 8.1E-11 76.8 0.3 120 418-571 11-130 (131)
138 2qk2_A LP04448P; mini spindles 97.8 9.3E-05 3.2E-09 73.6 12.1 184 422-620 18-209 (242)
139 2qk1_A Protein STU2; STU2P, XM 97.8 4.6E-05 1.6E-09 76.5 9.2 188 383-574 22-220 (249)
140 3b2a_A TON_1937, putative unch 97.8 0.00027 9.3E-09 68.3 13.4 224 419-660 33-261 (265)
141 1te4_A Conserved protein MTH18 97.8 3E-06 1E-10 76.2 -0.3 119 378-530 13-131 (131)
142 1ho8_A Vacuolar ATP synthase s 97.8 0.00063 2.1E-08 73.3 17.5 232 381-616 171-476 (480)
143 4ady_A RPN2, 26S proteasome re 97.6 0.0025 8.7E-08 74.4 20.2 235 379-659 431-675 (963)
144 3dad_A FH1/FH2 domain-containi 97.6 0.0014 4.7E-08 67.3 15.7 155 378-533 119-287 (339)
145 3dad_A FH1/FH2 domain-containi 97.5 0.002 6.8E-08 66.1 16.2 151 508-660 123-287 (339)
146 2iw3_A Elongation factor 3A; a 97.4 0.0073 2.5E-07 71.3 20.9 266 378-664 55-328 (986)
147 2qk1_A Protein STU2; STU2P, XM 97.4 0.0021 7.1E-08 64.3 14.0 191 465-662 21-222 (249)
148 2ct0_A Non-SMC element 1 homol 97.2 0.00041 1.4E-08 55.2 4.8 48 279-326 15-64 (74)
149 1vyx_A ORF K3, K3RING; zinc-bi 97.1 0.0006 2E-08 52.0 5.0 48 278-325 5-58 (60)
150 2db0_A 253AA long hypothetical 97.1 0.18 6.3E-06 46.9 22.4 214 376-616 31-246 (253)
151 2db0_A 253AA long hypothetical 96.9 0.11 3.8E-06 48.3 19.2 213 419-658 32-244 (253)
152 3tjz_B Coatomer subunit gamma; 96.9 0.003 1E-07 66.3 10.1 240 377-653 104-346 (355)
153 3vk6_A E3 ubiquitin-protein li 96.9 0.00085 2.9E-08 55.6 4.2 45 281-325 3-48 (101)
154 4ady_A RPN2, 26S proteasome re 96.8 0.033 1.1E-06 65.2 18.7 242 378-659 473-718 (963)
155 1ho8_A Vacuolar ATP synthase s 96.7 0.22 7.6E-06 53.6 23.0 197 378-575 78-302 (480)
156 4ffb_C Protein STU2; tubulin f 96.6 0.048 1.6E-06 55.1 16.0 185 382-574 14-212 (278)
157 3k1l_B Fancl; UBC, ring, RWD, 96.6 0.0014 4.7E-08 66.9 4.2 48 278-325 307-372 (381)
158 3tjz_B Coatomer subunit gamma; 96.3 0.15 5E-06 53.4 17.7 137 421-575 70-206 (355)
159 2iw3_A Elongation factor 3A; a 96.0 0.24 8.2E-06 58.5 19.5 221 378-614 96-322 (986)
160 2fv2_A RCD1 required for cell 96.0 0.37 1.3E-05 47.3 17.6 232 378-614 4-266 (268)
161 1wa5_C Importin alpha RE-expor 95.6 0.35 1.2E-05 57.7 19.8 258 392-661 376-671 (960)
162 3oc3_A Helicase MOT1, MOT1; re 95.4 0.092 3.2E-06 57.1 11.9 245 378-656 175-432 (800)
163 3i2d_A E3 SUMO-protein ligase 95.1 0.014 4.9E-07 60.5 4.4 64 279-342 249-316 (371)
164 2fv2_A RCD1 required for cell 94.8 0.19 6.6E-06 49.3 11.1 147 393-541 72-233 (268)
165 2jun_A Midline-1; B-BOX, TRIM, 94.6 0.014 4.8E-07 49.4 2.3 34 278-311 2-38 (101)
166 2of3_A ZYG-9; multifunctional 94.5 0.58 2E-05 46.7 14.3 179 380-573 49-235 (266)
167 4fo9_A E3 SUMO-protein ligase 94.4 0.035 1.2E-06 57.4 5.1 66 277-342 213-282 (360)
168 1upk_A MO25 protein; transfera 93.6 0.86 3E-05 46.6 13.6 197 378-576 79-285 (341)
169 3nw0_A Non-structural maintena 93.5 0.066 2.3E-06 52.7 5.0 49 279-327 180-230 (238)
170 3ebb_A Phospholipase A2-activa 93.5 1 3.4E-05 46.0 14.0 145 467-611 154-301 (304)
171 4ffb_C Protein STU2; tubulin f 93.3 0.28 9.7E-06 49.2 9.7 189 465-663 14-215 (278)
172 3ebb_A Phospholipase A2-activa 92.6 0.85 2.9E-05 46.5 11.9 161 380-543 106-274 (304)
173 2f31_A Diaphanous protein homo 92.2 3.1 0.00011 40.5 15.2 177 382-561 5-215 (233)
174 3eg5_B Protein diaphanous homo 92.0 5.7 0.0002 41.8 17.9 177 381-561 70-281 (383)
175 1wa5_C Importin alpha RE-expor 91.4 4.4 0.00015 48.1 18.3 220 388-615 416-669 (960)
176 3u0r_A Apoptosis inhibitor 5; 91.0 6.7 0.00023 42.0 16.8 123 386-528 37-159 (507)
177 2of3_A ZYG-9; multifunctional 90.0 1.1 3.7E-05 44.7 9.3 145 378-534 88-238 (266)
178 1lrv_A LRV, leucine-rich repea 89.7 0.42 1.4E-05 47.2 6.0 82 408-525 63-144 (244)
179 1lrv_A LRV, leucine-rich repea 89.4 0.36 1.2E-05 47.7 5.3 41 384-442 81-121 (244)
180 3oc3_A Helicase MOT1, MOT1; re 89.1 2.5 8.7E-05 46.2 11.6 213 420-656 175-400 (800)
181 2x1g_F Cadmus; transport prote 89.0 6.4 0.00022 46.7 16.8 217 431-662 476-724 (971)
182 2bnx_A Diaphanous protein homo 88.5 15 0.0005 38.6 17.3 178 382-562 9-220 (386)
183 2f31_A Diaphanous protein homo 88.4 5.2 0.00018 38.9 12.8 145 458-603 41-215 (233)
184 2x1g_F Cadmus; transport prote 86.1 24 0.00081 41.7 19.4 173 474-661 477-664 (971)
185 2x19_B Importin-13; nuclear tr 84.1 38 0.0013 39.8 19.9 134 429-574 459-599 (963)
186 3eg5_B Protein diaphanous homo 84.0 14 0.00047 38.8 14.2 143 454-598 104-276 (383)
187 1upk_A MO25 protein; transfera 83.8 41 0.0014 34.3 22.0 240 414-662 73-334 (341)
188 3c2g_A SYS-1 protein; beta-cat 83.2 18 0.00063 36.9 13.7 109 443-554 266-377 (619)
189 4hat_C Exportin-1; heat repeat 82.7 8.6 0.0003 46.0 13.4 140 473-618 465-620 (1023)
190 3c2g_A SYS-1 protein; beta-cat 82.4 28 0.00097 35.6 14.6 127 485-613 266-400 (619)
191 2x19_B Importin-13; nuclear tr 81.3 20 0.00069 42.2 16.0 171 474-660 462-646 (963)
192 3m1i_C Exportin-1; heat repeat 80.5 27 0.00092 41.7 16.8 219 379-617 18-264 (1049)
193 1weo_A Cellulose synthase, cat 79.5 2.6 8.9E-05 33.9 4.8 48 278-325 15-69 (93)
194 2bnx_A Diaphanous protein homo 79.0 23 0.00078 37.2 13.7 143 459-602 46-218 (386)
195 4hat_C Exportin-1; heat repeat 76.4 16 0.00055 43.6 12.9 143 389-535 465-621 (1023)
196 3gjx_A Exportin-1; transport, 72.2 41 0.0014 40.3 14.8 221 378-617 29-276 (1073)
197 3m1i_C Exportin-1; heat repeat 71.3 19 0.00065 43.1 12.0 206 430-656 27-259 (1049)
198 1mhq_A ADP-ribosylation factor 69.2 15 0.00052 32.9 7.9 73 376-448 37-116 (148)
199 2ko5_A Ring finger protein Z; 66.1 2.7 9.2E-05 34.2 2.0 50 276-327 25-74 (99)
200 2cs3_A Protein C14ORF4, MY039 65.8 9.5 0.00032 29.9 4.9 38 275-312 11-52 (93)
201 1x5b_A Signal transducing adap 65.0 14 0.00049 33.6 7.0 72 376-447 51-124 (163)
202 3qml_C Protein SLS1, nucleotid 62.9 64 0.0022 32.4 11.7 136 432-573 41-188 (315)
203 1vdy_A Hypothetical protein (R 62.3 11 0.00038 33.4 5.5 74 588-662 51-132 (140)
204 3u0r_A Apoptosis inhibitor 5; 61.1 90 0.0031 33.5 13.1 120 514-655 39-158 (507)
205 1juq_A ADP-ribosylation factor 61.1 17 0.00059 33.3 6.8 73 376-448 49-128 (171)
206 3a6p_A Exportin-5; exportin-5, 60.8 1.4E+02 0.0049 36.1 16.9 220 379-618 13-278 (1204)
207 3mjh_B Early endosome antigen 60.8 1.8 6.2E-05 28.4 0.0 15 279-293 5-19 (34)
208 3ibv_A Exportin-T; karyopherin 60.6 2.6E+02 0.0088 33.0 18.7 210 390-618 21-262 (980)
209 3gae_A Protein DOA1; UFD3, CDC 59.4 56 0.0019 31.9 10.7 136 393-538 70-223 (253)
210 3gjx_A Exportin-1; transport, 59.1 1.8E+02 0.0061 34.8 16.8 213 421-659 30-274 (1073)
211 1lsh_A Lipovitellin (LV-1N, LV 56.1 2.5E+02 0.0084 33.5 17.6 169 421-618 393-578 (1056)
212 3ldz_A STAM-1, signal transduc 55.9 20 0.00067 31.7 6.1 72 376-447 41-113 (140)
213 1lsh_A Lipovitellin (LV-1N, LV 55.8 1.5E+02 0.005 35.5 15.5 130 378-535 441-579 (1056)
214 3l9t_A Putative uncharacterize 55.2 74 0.0025 30.7 10.3 137 379-536 72-211 (240)
215 1x5b_A Signal transducing adap 55.2 18 0.00063 32.9 5.9 70 420-489 53-124 (163)
216 3ldz_A STAM-1, signal transduc 53.8 27 0.00092 30.8 6.6 72 588-661 44-115 (140)
217 2jvx_A NF-kappa-B essential mo 53.3 3.6 0.00012 25.7 0.5 16 278-293 2-17 (28)
218 3l9t_A Putative uncharacterize 52.6 76 0.0026 30.7 9.9 143 422-584 74-218 (240)
219 3zyq_A Hepatocyte growth facto 48.2 18 0.00061 34.9 4.9 71 420-490 46-118 (226)
220 3g2s_A C-terminal fragment of 48.1 51 0.0018 29.4 7.5 73 376-448 47-126 (149)
221 3pst_A Protein DOA1; protein d 47.4 63 0.0022 34.1 9.2 133 394-536 243-393 (425)
222 2o35_A Hypothetical protein DU 45.2 8.5 0.00029 31.5 1.6 13 300-312 42-54 (105)
223 2jne_A Hypothetical protein YF 45.0 5.9 0.0002 32.4 0.7 41 279-325 32-72 (101)
224 1dvp_A HRS, hepatocyte growth 44.6 23 0.0008 33.8 5.1 70 420-489 43-114 (220)
225 3fyb_A Protein of unknown func 44.4 9 0.00031 31.3 1.6 13 300-312 41-53 (104)
226 3l3f_X Protein DOA1, DOA1/UFD3 44.4 54 0.0018 33.9 8.0 132 394-535 180-329 (362)
227 1m3v_A FLIN4, fusion of the LI 44.1 12 0.00041 32.1 2.6 51 277-328 30-83 (122)
228 6rxn_A Rubredoxin; electron tr 43.8 7.5 0.00026 27.4 1.0 13 275-287 26-38 (46)
229 2kkx_A Uncharacterized protein 43.7 21 0.0007 29.4 3.7 51 276-327 24-80 (102)
230 3ibv_A Exportin-T; karyopherin 42.6 1.4E+02 0.0048 35.3 12.4 216 432-661 456-731 (980)
231 1juq_A ADP-ribosylation factor 40.7 61 0.0021 29.6 7.0 71 588-660 52-128 (171)
232 3zyq_A Hepatocyte growth facto 39.6 32 0.0011 33.1 5.1 71 503-573 45-117 (226)
233 1mhq_A ADP-ribosylation factor 39.3 56 0.0019 29.0 6.4 71 588-660 40-116 (148)
234 1e8j_A Rubredoxin; iron-sulfur 38.6 11 0.00039 27.1 1.3 14 275-288 32-45 (52)
235 4rxn_A Rubredoxin; electron tr 38.2 10 0.00035 27.7 1.0 14 275-288 32-45 (54)
236 2xqn_T Testin, TESS; metal-bin 38.0 18 0.00063 30.9 2.9 47 277-326 28-75 (126)
237 3pwf_A Rubrerythrin; non heme 37.9 35 0.0012 31.2 4.9 11 314-324 153-163 (170)
238 2k5c_A Uncharacterized protein 37.8 10 0.00034 29.8 0.9 54 280-333 9-70 (95)
239 2kw6_A Cyclin-dependent kinase 37.7 9.4 0.00032 28.5 0.7 39 64-105 15-56 (65)
240 3g2s_A C-terminal fragment of 36.6 75 0.0025 28.3 6.7 72 588-661 50-127 (149)
241 4abx_A DNA repair protein RECN 35.5 2.5E+02 0.0086 25.3 14.9 73 56-134 8-82 (175)
242 1yk4_A Rubredoxin, RD; electro 33.5 13 0.00046 26.8 1.0 13 275-287 31-43 (52)
243 2kn9_A Rubredoxin; metalloprot 33.3 15 0.0005 29.2 1.2 14 275-288 56-69 (81)
244 2v3b_B Rubredoxin 2, rubredoxi 33.1 13 0.00046 27.1 0.9 14 275-288 32-45 (55)
245 1elk_A Target of MYB1; superhe 33.0 1E+02 0.0036 27.5 7.2 72 376-447 52-129 (157)
246 2xjy_A Rhombotin-2; oncoprotei 32.9 25 0.00084 30.3 2.9 49 277-326 27-78 (131)
247 1dvp_A HRS, hepatocyte growth 32.1 50 0.0017 31.4 5.2 71 503-573 42-114 (220)
248 2yru_A Steroid receptor RNA ac 31.1 1.1E+02 0.0037 26.1 6.5 42 50-96 33-74 (118)
249 2nz7_A NOD1, caspase recruitme 30.6 40 0.0014 27.7 3.6 78 50-138 14-92 (98)
250 1dx8_A Rubredoxin; electron tr 30.5 16 0.00054 28.2 1.0 14 275-288 36-49 (70)
251 4e9m_A Nucleotide-binding olig 28.2 67 0.0023 28.2 4.7 75 50-134 28-102 (144)
252 3brd_D Protein LIN-12; protein 28.2 19 0.00064 22.0 0.8 18 6-23 5-22 (29)
253 3uk3_C Zinc finger protein 217 27.8 28 0.00096 24.3 2.0 37 279-326 4-44 (57)
254 3lay_A Zinc resistance-associa 27.6 1.8E+02 0.0061 26.6 7.7 56 143-202 66-121 (175)
255 2m1l_A Cyclin-dependent kinase 27.5 20 0.00069 27.1 1.0 42 64-105 19-60 (69)
256 1s24_A Rubredoxin 2; electron 27.3 20 0.00068 28.9 1.1 14 275-288 64-77 (87)
257 3o2t_A Symplekin; heat repeat, 27.1 5.4E+02 0.018 26.6 12.3 178 391-580 39-263 (386)
258 2rgt_A Fusion of LIM/homeobox 27.0 71 0.0024 28.8 5.0 47 277-326 31-77 (169)
259 2jtn_A LIM domain-binding prot 26.8 50 0.0017 30.3 4.0 47 277-326 85-131 (182)
260 3a6p_A Exportin-5; exportin-5, 26.8 4.1E+02 0.014 32.0 13.2 128 431-574 25-162 (1204)
261 1rut_X Flinc4, fusion protein 26.7 14 0.00049 34.3 0.2 49 277-326 30-81 (188)
262 1x61_A Thyroid receptor intera 26.4 84 0.0029 23.5 4.6 36 277-312 31-67 (72)
263 1wil_A KIAA1045 protein; ring 25.6 64 0.0022 25.7 3.6 47 275-321 11-74 (89)
264 3fga_B Serine/threonine-protei 25.6 4.6E+02 0.016 27.3 11.4 32 416-447 126-157 (403)
265 2jrp_A Putative cytoplasmic pr 25.4 20 0.00067 28.5 0.7 40 280-325 3-42 (81)
266 1elk_A Target of MYB1; superhe 24.7 1.1E+02 0.0037 27.4 5.7 71 420-490 54-130 (157)
267 1iml_A CRIP, cysteine rich int 24.4 55 0.0019 25.0 3.2 45 277-324 25-71 (76)
268 2lv2_A Insulinoma-associated p 23.3 69 0.0024 25.3 3.7 40 276-326 25-68 (85)
269 3pst_A Protein DOA1; protein d 22.2 4.3E+02 0.015 27.7 10.4 129 436-574 243-389 (425)
270 2d8x_A Protein pinch; LIM doma 21.6 66 0.0022 24.0 3.1 36 277-312 29-65 (70)
271 1bbo_A Human enhancer-binding 21.4 58 0.002 22.5 2.7 36 280-326 2-41 (57)
272 3gae_A Protein DOA1; UFD3, CDC 21.0 1.8E+02 0.0062 28.2 7.0 126 438-574 73-217 (253)
273 2lri_C Autoimmune regulator; Z 20.6 61 0.0021 24.5 2.6 44 278-323 11-59 (66)
274 2eps_A POZ-, at HOOK-, and zin 20.5 1.8E+02 0.006 19.9 5.1 38 277-325 10-52 (54)
275 2epq_A POZ-, at HOOK-, and zin 20.4 1.1E+02 0.0037 19.9 3.8 33 278-321 9-45 (45)
276 2cup_A Skeletal muscle LIM-pro 20.3 40 0.0014 27.4 1.7 46 277-325 31-77 (101)
277 3kat_A Nacht, LRR and PYD doma 20.3 1.2E+02 0.004 25.4 4.6 57 50-108 21-77 (107)
278 3vhs_A ATPase wrnip1; zinc fin 20.2 24 0.00082 21.1 0.2 12 280-291 7-18 (29)
279 3qml_C Protein SLS1, nucleotid 20.2 6.6E+02 0.022 25.1 13.1 147 505-659 24-188 (315)
No 1
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=2.4e-30 Score=286.95 Aligned_cols=283 Identities=19% Similarity=0.222 Sum_probs=244.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccC-CchhhHH
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKH-TSGKKVI 456 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~-~~~r~~i 456 (683)
.++.|+..|.+++++.|..|++.|++++.+++.++..+++.|+||.|+.+|++++..+|..|+++|.||+.+ +++|..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 578899999999999999999999999988888898999999999999999999999999999999999987 7889999
Q ss_pred hhcCcHHHHHHHHc-CCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhh--------cC--------CHHH
Q 037121 457 VESGGLKVILKVLK-SGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIE--------EG--------TDCG 519 (683)
Q Consensus 457 ~~~g~i~~Lv~lL~-~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~--------~~--------~~~~ 519 (683)
++.|++++|+.+|. ++ +.+++++|+++|+||+..++++..+.. |++|.|+.+|. ++ +..+
T Consensus 83 ~~~G~i~~Lv~lL~~~~-~~~~~~~a~~aL~nLa~~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSSTDELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHTTCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSSSTHHHHHH--HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHcCCHHHHHHHHhhCC-CHHHHHHHHHHHHHHhcCHHhHHHHHh--ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 99999999999999 66 899999999999999999888888886 99999999993 22 3456
Q ss_pred HHHHHHHHHHcccCCchhhhHhhc-CcHHHHHHHHccC-----CChhHHHHHHHHHHHhhCC------------------
Q 037121 520 KKNAVVAIFGLLLSQGNHQKVLDA-GTVPLLADILASS-----NRTELITDSLAVLANLAED------------------ 575 (683)
Q Consensus 520 ~~~A~~aL~nLs~~~~n~~~iv~~-g~v~~Lv~lL~~~-----~~~~~~~~al~iL~nLa~~------------------ 575 (683)
.+.|+++|+|||.+++++..+++. |+++.|+.+|... .+..+++.|+.+|.||+..
T Consensus 160 ~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 679999999999998889999998 9999999999531 4567889999999999732
Q ss_pred ---------------------------------hhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChH--
Q 037121 576 ---------------------------------IQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNARE-- 620 (683)
Q Consensus 576 ---------------------------------~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~-- 620 (683)
+++.+.+++.|+++.|+.+|.++.++..++.|+++|.|||.+...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 123345566677889999998765789999999999999986532
Q ss_pred -HHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhhh
Q 037121 621 -EVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFIE 663 (683)
Q Consensus 621 -~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~ 663 (683)
...+.++...|++|.|+.++.+++.++++.|+|+|++|....+
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~ 363 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH
Confidence 2323344347899999999999999999999999999987544
No 2
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=1.2e-29 Score=270.50 Aligned_cols=272 Identities=17% Similarity=0.172 Sum_probs=236.4
Q ss_pred HHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC-----------CCHHHHHHHHHHHHhhccCCc-hhhHHh-h
Q 037121 392 EEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS-----------PDQCVQENAVAALLKLSKHTS-GKKVIV-E 458 (683)
Q Consensus 392 ~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-----------~d~~~q~~A~~aL~nLs~~~~-~r~~i~-~ 458 (683)
..+..|++.|.+++.+ +++|..+.+.|++++|+.+|.+ .++.+|.+|+++|.||+.+++ +|..+. .
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3456899999999985 8999999999999999999952 247899999999999998765 677776 4
Q ss_pred cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC--chhHHHhhccCCChHHHHHhh-hcCCHHHHHHHHHHHHHccc-CC
Q 037121 459 SGGLKVILKVLKSGLSLEARQIAAATLFYLTSV--KGYRKLIGETPKAIPALVKLI-EEGTDCGKKNAVVAIFGLLL-SQ 534 (683)
Q Consensus 459 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~-~~ 534 (683)
.|+|+.|+.+|.++ +.+++++|+++|.||+.. ++++..|.. .|+||.|+++| .+++..+++.|+.+|+||+. ++
T Consensus 126 ~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~i~~-~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 126 KGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred CCcHHHHHHHHCCC-CHHHHHHHHHHHHHHhccCCHHHHHHHHH-CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 56699999999998 899999999999999985 568888888 99999999975 56788999999999999999 56
Q ss_pred chhhhHh-hcCcHHHHHHHHccCCCh---hHHHHHHHHHHHhhC----ChhhHHHHHhcCChHHHHHhhccCCChHHHHH
Q 037121 535 GNHQKVL-DAGTVPLLADILASSNRT---ELITDSLAVLANLAE----DIQGTSTILKTSALPVIIGLLQTLTSRAGKEY 606 (683)
Q Consensus 535 ~n~~~iv-~~g~v~~Lv~lL~~~~~~---~~~~~al~iL~nLa~----~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~ 606 (683)
+++..++ ..|+++.|+++|....+. .+++.|+++|.||+. +++++..+.+.|+++.|+++|+++ +...+++
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence 7888888 789999999999433222 589999999999985 899999999999999999999998 8999999
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhhhhcCCCC
Q 037121 607 CVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFIETCSSGV 669 (683)
Q Consensus 607 A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~~~~~~~ 669 (683)
|+++|+||+.++. +..+.+.+ .|++|.|+.++.++++++|+.|+++|.+|.......|+..
T Consensus 283 A~~aL~nLa~~~~-~~~~~i~~-~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~~~ 343 (354)
T 3nmw_A 283 ACGTLWNLSARNP-KDQEALWD-MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDA 343 (354)
T ss_dssp HHHHHHHHTSSCH-HHHHHHHH-TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC--
T ss_pred HHHHHHHHhCCCH-HHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHhhh
Confidence 9999999997664 44556666 8999999999999999999999999999998876666643
No 3
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=2.3e-29 Score=282.20 Aligned_cols=283 Identities=19% Similarity=0.248 Sum_probs=242.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccC--CchhhH
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKH--TSGKKV 455 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~--~~~r~~ 455 (683)
.++.||..|.+++++.|.+|++.|++++..++.+|..+++.|+||+|+.+|.+++.++|++|+++|.||+.. ++||..
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~ 128 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIA 128 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 689999999999999999999999999998999999999999999999999999999999999999999984 788999
Q ss_pred HhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhh------------------cCCH
Q 037121 456 IVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIE------------------EGTD 517 (683)
Q Consensus 456 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~------------------~~~~ 517 (683)
|++.|+|++|+.+|.++.+.+++++|+++|++|+..++++..|+. +++|.|+.++. ..+.
T Consensus 129 I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 129 IKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD--HALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh--ccHHHHHHHHhcccccccccccccccccccccH
Confidence 999999999999999854789999999999999999999999986 57999999872 1246
Q ss_pred HHHHHHHHHHHHcccCCch-hhhHhhc-CcHHHHHHHHcc-----CCChhHHHHHHHHHHHhhCCh--------------
Q 037121 518 CGKKNAVVAIFGLLLSQGN-HQKVLDA-GTVPLLADILAS-----SNRTELITDSLAVLANLAEDI-------------- 576 (683)
Q Consensus 518 ~~~~~A~~aL~nLs~~~~n-~~~iv~~-g~v~~Lv~lL~~-----~~~~~~~~~al~iL~nLa~~~-------------- 576 (683)
.+++.|+++|+||+.+.++ +..+++. |+++.|+.+|.. ..+...++.|+.+|+||+..-
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 8999999999999998764 8888876 667899999953 246789999999999998542
Q ss_pred ------------hhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChH---HHHHHHhcCCCcHHHHHHhHh
Q 037121 577 ------------QGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNARE---EVTASLAKDPSLMNSLYSLTT 641 (683)
Q Consensus 577 ------------~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~---~~~~~l~~~~g~i~~L~~Ll~ 641 (683)
.+..++.+.++++.|+.+|+.+..+.++|+|+++|.|||.+... ..+..+.+ .|++|.|+.|+.
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~-~~glp~Lv~LL~ 365 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQ-EKALSAIADLLT 365 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTS-HHHHHHHHHGGG
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHH-cCcHHHHHHHHc
Confidence 12233344455677889997654789999999999999987522 22334443 788999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhh
Q 037121 642 DGTSQARKKARSLIKILHKFIE 663 (683)
Q Consensus 642 ~g~~~~k~~A~~lL~~l~~~~~ 663 (683)
++++.+++.|+++|++|.....
T Consensus 366 s~~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 366 NEHERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHHHHhCChh
Confidence 9999999999999999987643
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=270.52 Aligned_cols=268 Identities=17% Similarity=0.173 Sum_probs=232.7
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC-----------CCHHHHHHHHHHHHhhccCCc-hhhHHh-hcC
Q 037121 394 KNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS-----------PDQCVQENAVAALLKLSKHTS-GKKVIV-ESG 460 (683)
Q Consensus 394 ~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-----------~d~~~q~~A~~aL~nLs~~~~-~r~~i~-~~g 460 (683)
+++|++.|.+++. ++++|..+.+.|++++|+.+|.. .+..+|.+|+++|.||+.+++ ++..+. ..|
T Consensus 165 ~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 165 ICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp THHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 4589999999987 58999999999999999999942 347789999999999998776 566665 456
Q ss_pred cHHHHHHHHcCCCCHHHHHHHHHHHHHhccC--chhHHHhhccCCChHHHHHhh-hcCCHHHHHHHHHHHHHccc-CCch
Q 037121 461 GLKVILKVLKSGLSLEARQIAAATLFYLTSV--KGYRKLIGETPKAIPALVKLI-EEGTDCGKKNAVVAIFGLLL-SQGN 536 (683)
Q Consensus 461 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~-~~~n 536 (683)
+|+.|+.+|.++ +.+++++|+++|.||+.. ++++..|.. .|+||.|+++| .+++..+++.|+.+|+||+. ++++
T Consensus 244 aIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~-~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~n 321 (458)
T 3nmz_A 244 CMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 321 (458)
T ss_dssp HHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHH-TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred cHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHH-cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHH
Confidence 799999999998 899999999999999985 568888887 99999999974 56788999999999999999 6688
Q ss_pred hhhHh-hcCcHHHHHHHHccCCCh---hHHHHHHHHHHHhh----CChhhHHHHHhcCChHHHHHhhccCCChHHHHHHH
Q 037121 537 HQKVL-DAGTVPLLADILASSNRT---ELITDSLAVLANLA----EDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCV 608 (683)
Q Consensus 537 ~~~iv-~~g~v~~Lv~lL~~~~~~---~~~~~al~iL~nLa----~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~ 608 (683)
+..++ ..|+++.|+++|....+. .+++.|+++|.||+ .+++++..+.+.|+++.|+++|+++ +...+++|+
T Consensus 322 k~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~ 400 (458)
T 3nmz_A 322 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNAC 400 (458)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHH
Confidence 98888 789999999999433222 48999999999998 4899999999999999999999998 899999999
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhhhhcCC
Q 037121 609 SILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFIETCSS 667 (683)
Q Consensus 609 ~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~~~~~ 667 (683)
++|+||+.++. +....+.+ .|+++.|+.++.++++++++.|+++|.+|.......|.
T Consensus 401 ~aL~nLa~~~~-~~~~~i~~-~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ky~ 457 (458)
T 3nmz_A 401 GTLWNLSARNP-KDQEALWD-MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 457 (458)
T ss_dssp HHHHHHHSSCH-HHHHHHHH-HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC--
T ss_pred HHHHHHHcCCH-HHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhhhc
Confidence 99999997664 44556665 89999999999999999999999999999876655553
No 5
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.96 E-value=3e-27 Score=262.03 Aligned_cols=284 Identities=18% Similarity=0.163 Sum_probs=240.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcC-CCCHHHHHHHHHHHHhhccCCchhh
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLS-SPDQCVQENAVAALLKLSKHTSGKK 454 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~d~~~q~~A~~aL~nLs~~~~~r~ 454 (683)
.+.++.|+..|.+++++.|..|++.|++++.++++++..+++.|+||+|+++|. +++.+++++|+++|.||+.++++|.
T Consensus 43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~ 122 (457)
T 1xm9_A 43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122 (457)
T ss_dssp TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH
Confidence 347899999999999999999999999999988999999999999999999999 8899999999999999999988899
Q ss_pred HHhhcCcHHHHHHHHc--------CC-------CCHHHHHHHHHHHHHhccCchhHHHhhccC-CChHHHHHhhhcC---
Q 037121 455 VIVESGGLKVILKVLK--------SG-------LSLEARQIAAATLFYLTSVKGYRKLIGETP-KAIPALVKLIEEG--- 515 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~--------~~-------~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~-g~i~~Lv~lL~~~--- 515 (683)
.+++ |++++|+.+|. ++ .+.++..+|+++|+||+..++++..+.. . |+++.|+.+|.++
T Consensus 123 ~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~ 200 (457)
T 1xm9_A 123 ELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN-YSGLIDSLMAYVQNCVAA 200 (457)
T ss_dssp HHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTT-STTHHHHHHHHHHHHHHH
T ss_pred HHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHH-cCCCHHHHHHHHHhhccc
Confidence 9999 99999999993 22 1345566999999999999888888877 5 9999999888641
Q ss_pred --------------------------------------------------------------------------------
Q 037121 516 -------------------------------------------------------------------------------- 515 (683)
Q Consensus 516 -------------------------------------------------------------------------------- 515 (683)
T Consensus 201 ~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (457)
T 1xm9_A 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY 280 (457)
T ss_dssp TCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGG
T ss_pred cCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHh
Confidence
Q ss_pred ----------------CHHHHHHHHHHHHHcccCCch------hhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhh
Q 037121 516 ----------------TDCGKKNAVVAIFGLLLSQGN------HQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA 573 (683)
Q Consensus 516 ----------------~~~~~~~A~~aL~nLs~~~~n------~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa 573 (683)
++..++.|+|+|.||+..... +..+.+.|++|.|+++| .+++.+++..|+++|.||+
T Consensus 281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL-~~~~~~v~~~A~~aL~nls 359 (457)
T 1xm9_A 281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLL-QSGNSDVVRSGASLLSNMS 359 (457)
T ss_dssp SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHH-hCCCHhHHHHHHHHHHHHh
Confidence 234556688999999976543 22334689999999999 7788999999999999999
Q ss_pred CChhhHHHHHhcCChHHHHHhhccCCC-----hHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcC-CHHH
Q 037121 574 EDIQGTSTILKTSALPVIIGLLQTLTS-----RAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDG-TSQA 647 (683)
Q Consensus 574 ~~~~~~~~i~~~g~i~~Lv~lL~~~~s-----~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g-~~~~ 647 (683)
.+++.+..|.+ |+++.|+++|..+.. +.....++.+|.+++.++++ ....+.+ .|+++.|+.|+.++ ++++
T Consensus 360 ~~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~-~~~~i~~-~g~l~~L~~L~~~~~~~~i 436 (457)
T 1xm9_A 360 RHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ-LAKQYFS-SSMLNNIINLCRSSASPKA 436 (457)
T ss_dssp TSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH-HHHHHCC-HHHHHHHHHHHHCTTCHHH
T ss_pred cCHHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH-HHHHHHH-cCCHHHHHHHHcCCCcHHH
Confidence 98888877764 799999999988622 35777899999999987644 4555554 89999999999999 9999
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 037121 648 RKKARSLIKILHKFIETC 665 (683)
Q Consensus 648 k~~A~~lL~~l~~~~~~~ 665 (683)
+++|.++|.++-.+.+.|
T Consensus 437 ~~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 437 AEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHHHHHHTTSSSTTCS
T ss_pred HHHHHHHHHHHHcchhhh
Confidence 999999999876665544
No 6
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.95 E-value=9.5e-28 Score=263.38 Aligned_cols=284 Identities=18% Similarity=0.171 Sum_probs=241.7
Q ss_pred HHHHHHHHHHHhcC------------CCHHHHHHHHHHHHHHHhcCchhhHHHHhcCCh----------HHHHhhcCCCC
Q 037121 375 MKLMSRFLARRLFF------------GTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAI----------PPLLNLLSSPD 432 (683)
Q Consensus 375 ~~~~i~~Lv~~L~s------------~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i----------~~Lv~lL~s~d 432 (683)
..+.++.||+.|.. ++++.|.+|+++|.+++..+++......+.|++ +.+++++.+.+
T Consensus 68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (458)
T 3nmz_A 68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE 147 (458)
T ss_dssp HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence 34578999999986 347999999999999999999988888888888 77778887642
Q ss_pred --HH-----HHH-------HHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcC----------CCCHHHHHHHHHHHHHh
Q 037121 433 --QC-----VQE-------NAVAALLKLSKHTSGKKVIVESGGLKVILKVLKS----------GLSLEARQIAAATLFYL 488 (683)
Q Consensus 433 --~~-----~q~-------~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~----------~~~~e~~~~Aa~~L~~L 488 (683)
.+ +++ +|+++|.|++.++++|..|++.|++++|+.+|.. ..+.+++++|+++|.||
T Consensus 148 ~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nL 227 (458)
T 3nmz_A 148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 227 (458)
T ss_dssp SSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHH
Confidence 22 444 9999999999999999999999999999999952 11467899999999999
Q ss_pred ccCch-hHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccC--CchhhhHhhcCcHHHHHHHHccCCChhHHHHH
Q 037121 489 TSVKG-YRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLS--QGNHQKVLDAGTVPLLADILASSNRTELITDS 565 (683)
Q Consensus 489 s~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~--~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~a 565 (683)
+.+++ ++..+....|+||.|+.+|.++++.++..|+++|.||+.. ++++..+++.|+|+.|+++|..+.+..+++.|
T Consensus 228 a~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A 307 (458)
T 3nmz_A 228 TFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 307 (458)
T ss_dssp HTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHH
T ss_pred hCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHH
Confidence 98776 5666655356799999999999999999999999999985 45889999999999999987466688999999
Q ss_pred HHHHHHhhC-ChhhHHHHH-hcCChHHHHHhhccCCCh---HHHHHHHHHHHHHhc---CChHHHHHHHhcCCCcHHHHH
Q 037121 566 LAVLANLAE-DIQGTSTIL-KTSALPVIIGLLQTLTSR---AGKEYCVSILLSLCS---NAREEVTASLAKDPSLMNSLY 637 (683)
Q Consensus 566 l~iL~nLa~-~~~~~~~i~-~~g~i~~Lv~lL~~~~s~---~~ke~A~~~L~~L~~---~~~~~~~~~l~~~~g~i~~L~ 637 (683)
+.+|+||+. +++++..|. ..|+++.|+++|.++.+. ..++.|+++|.||+. .+ ++..+.+.+ .|+++.|+
T Consensus 308 ~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~-~~~~~~i~~-~G~i~~Lv 385 (458)
T 3nmz_A 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN-EDHRQILRE-NNCLQTLL 385 (458)
T ss_dssp HHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTC-HHHHHHHHH-TTHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCC-HHHHHHHHH-cccHHHHH
Confidence 999999998 888888888 788899999999886222 489999999999997 44 455666666 89999999
Q ss_pred HhHhcCCHHHHHHHHHHHHHHHH
Q 037121 638 SLTTDGTSQARKKARSLIKILHK 660 (683)
Q Consensus 638 ~Ll~~g~~~~k~~A~~lL~~l~~ 660 (683)
.++.+++..+++.|+++|.+|..
T Consensus 386 ~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 386 QHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHHcCCChHHHHHHHHHHHHHHc
Confidence 99999999999999999999983
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.95 E-value=5.4e-27 Score=263.73 Aligned_cols=281 Identities=19% Similarity=0.223 Sum_probs=249.2
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch-hh
Q 037121 377 LMSRFLARRLFFG-TNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KK 454 (683)
Q Consensus 377 ~~i~~Lv~~L~s~-~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~-r~ 454 (683)
+.++.||+.|+++ +++.|.+|++.|.+++..+++++..+++.|+||.|+.+|.+++.++++.|+++|+||+.+.+. |.
T Consensus 100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~ 179 (510)
T 3ul1_B 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 179 (510)
T ss_dssp THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4789999999754 689999999999999999999999999999999999999999999999999999999988654 88
Q ss_pred HHhhcCcHHHHHHHHcCCC----CHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHc
Q 037121 455 VIVESGGLKVILKVLKSGL----SLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGL 530 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~~~----~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 530 (683)
.+.+.|++++|+.+|.... ......+++++|.+++.+......+....+++|.|+.++.++++.++..|+++|.+|
T Consensus 180 ~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L 259 (510)
T 3ul1_B 180 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 259 (510)
T ss_dssp HHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 8889999999999998641 356788999999999998766555554468999999999999999999999999999
Q ss_pred ccCCchh-hhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHH
Q 037121 531 LLSQGNH-QKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCV 608 (683)
Q Consensus 531 s~~~~n~-~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~ 608 (683)
+.+..++ ..+++.|+++.|+++| .+++..++..++.+|+|++. ++..+..+.+.|+++.|+.+|.++ ++..++.|+
T Consensus 260 ~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~ 337 (510)
T 3ul1_B 260 TDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEAT 337 (510)
T ss_dssp TSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHH
T ss_pred hhchhhhHHHHHhcccchhhhhhh-cCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHH
Confidence 9877654 5677889999999999 77889999999999999975 677888999999999999999988 889999999
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHh
Q 037121 609 SILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 609 ~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 661 (683)
++|.|++.++.. ....+.. .|+++.|+.++.+++..+|+.|+|+|.++...
T Consensus 338 ~aL~nl~a~~~~-~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 338 WTMSNITAGRQD-QIQQVVN-HGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHHHHHTTSCHH-HHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHH-HHHHHHh-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 999999998744 4555555 89999999999999999999999999988653
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=3.4e-27 Score=272.97 Aligned_cols=282 Identities=14% Similarity=0.130 Sum_probs=246.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCc-----------------------------hhh---HHHHhcCChHH
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNI-----------------------------FNR---SCIVESGAIPP 423 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~-----------------------------~~r---~~i~~~G~i~~ 423 (683)
.+.++.|+..|++++...+..|++.|.+++.+.+ .++ ..++++|++|+
T Consensus 420 ~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~ 499 (810)
T 3now_A 420 KASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA 499 (810)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHH
Confidence 5688999999999999999999999999998542 123 67889999999
Q ss_pred HHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhc--c
Q 037121 424 LLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGE--T 501 (683)
Q Consensus 424 Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~--~ 501 (683)
|+.+|+++++.+|++|+++|+||+.++++|..+++.|++++|+.+|.++ +...+++|+++|.+|+.+.++...+.. .
T Consensus 500 LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 500 LCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG-TEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 9999999999999999999999999989999999999999999999999 889999999999999876554433211 1
Q ss_pred CCChHHHHHhhhcC-CHHHHHHHHHHHHHcccCC-chhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhH
Q 037121 502 PKAIPALVKLIEEG-TDCGKKNAVVAIFGLLLSQ-GNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGT 579 (683)
Q Consensus 502 ~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~-~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~ 579 (683)
.|++|+|+.+|.++ +...+..|+++|.||+..+ +++..+++.|+++.|+.+| .+.++.++..|+.+|+||+.+++.+
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL-~s~~~~Vq~~A~~~L~NLa~~~~~~ 657 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYL-MEDHLYLTRAAAQCLCNLVMSEDVI 657 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH-HSCCTTHHHHHHHHHHHHTTSHHHH
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCChHHH
Confidence 46999999999865 3455679999999999985 5789999999999999999 7788999999999999999999988
Q ss_pred HHHHh-cCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHH
Q 037121 580 STILK-TSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKIL 658 (683)
Q Consensus 580 ~~i~~-~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l 658 (683)
..+.+ .|+++.|+.++++. +...++.|+++|.+|+.+++.. .+.+....|+++.|+.++.+++..+|+.|.|++.++
T Consensus 658 ~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~-~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL 735 (810)
T 3now_A 658 KMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKC-CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNM 735 (810)
T ss_dssp HHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHH-HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHH-HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 88885 56799999999987 8999999999999999965444 444554379999999999999999999999999988
Q ss_pred HHh
Q 037121 659 HKF 661 (683)
Q Consensus 659 ~~~ 661 (683)
...
T Consensus 736 ~~~ 738 (810)
T 3now_A 736 INA 738 (810)
T ss_dssp HTT
T ss_pred HhC
Confidence 753
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.95 E-value=1.1e-26 Score=262.46 Aligned_cols=281 Identities=18% Similarity=0.214 Sum_probs=250.3
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCC-chh
Q 037121 376 KLMSRFLARRLFFG-TNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHT-SGK 453 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~-~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~-~~r 453 (683)
.+.++.||+.|..+ +++.|.+|++.|.+++.++++++..+++.|+||.|+.+|.+++.++++.|+++|+||+.+. .+|
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r 197 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFR 197 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 34789999999654 6899999999999999999999999999999999999999999999999999999999875 558
Q ss_pred hHHhhcCcHHHHHHHHcCCC----CHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 037121 454 KVIVESGGLKVILKVLKSGL----SLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFG 529 (683)
Q Consensus 454 ~~i~~~g~i~~Lv~lL~~~~----~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n 529 (683)
..+++.|++++|+.+|..+. ......+++++|.+++.+......+....+++|.|+.++.++++.++.+|+++|.+
T Consensus 198 ~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~ 277 (529)
T 3tpo_A 198 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISY 277 (529)
T ss_dssp HHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 89999999999999998642 35678899999999999876665555447899999999999999999999999999
Q ss_pred cccCCch-hhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHH
Q 037121 530 LLLSQGN-HQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYC 607 (683)
Q Consensus 530 Ls~~~~n-~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A 607 (683)
|+.+..+ ...+++.|+++.|+.+| .+++..++..|+.+|+|++. +++.+..+.+.|+++.|+.+|.++ ++..++.|
T Consensus 278 l~~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a 355 (529)
T 3tpo_A 278 LTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEA 355 (529)
T ss_dssp HHSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHH
T ss_pred hhhhhhhhHHHHHhccchHHHHHHh-cCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHH
Confidence 9987765 45677899999999999 78889999999999999975 677889999999999999999988 89999999
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHH
Q 037121 608 VSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHK 660 (683)
Q Consensus 608 ~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 660 (683)
+++|.|++.++.. ....+.. .|++|.|+.++.+++..+++.|+|+|.++..
T Consensus 356 ~~aL~nl~~~~~~-~~~~v~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 356 TWTMSNITAGRQD-QIQQVVN-HGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHHHHHHTSCHH-HHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHH-HHHHHHh-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 9999999998744 4555555 8999999999999999999999999998865
No 10
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.95 E-value=1.4e-27 Score=254.46 Aligned_cols=244 Identities=15% Similarity=0.160 Sum_probs=215.9
Q ss_pred HHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHHhcCchhhHHHHh-cCChHHHHhhcCCCCHHHHHHHHHHHH
Q 037121 377 LMSRFLARRLFF-----------GTNEEKNKAAYEIRLLAKSNIFNRSCIVE-SGAIPPLLNLLSSPDQCVQENAVAALL 444 (683)
Q Consensus 377 ~~i~~Lv~~L~s-----------~~~~~~~~a~~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~d~~~q~~A~~aL~ 444 (683)
+.++.|+..|.+ .+++.|..|++.|++++..++.++..+.. .|+||+|+.+|.+++.++|++|+++|.
T Consensus 73 G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~ 152 (354)
T 3nmw_A 73 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR 152 (354)
T ss_dssp THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 356777777742 24678999999999999988888888865 577999999999999999999999999
Q ss_pred hhccC--CchhhHHhhcCcHHHHHHHH-cCCCCHHHHHHHHHHHHHhcc-CchhHHHhhccCCChHHHHHhhhcCCH---
Q 037121 445 KLSKH--TSGKKVIVESGGLKVILKVL-KSGLSLEARQIAAATLFYLTS-VKGYRKLIGETPKAIPALVKLIEEGTD--- 517 (683)
Q Consensus 445 nLs~~--~~~r~~i~~~g~i~~Lv~lL-~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~--- 517 (683)
||+.. +++|..|++.|++++|+.+| .++ +.++++.|+++|+||+. .++++..|....|++|.|+.+|.++++
T Consensus 153 nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~ 231 (354)
T 3nmw_A 153 NLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 231 (354)
T ss_dssp HHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSC
T ss_pred HHhccCCHHHHHHHHHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCccc
Confidence 99975 46799999999999999986 455 88999999999999999 668899998559999999999987665
Q ss_pred -HHHHHHHHHHHHccc----CCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhh-CChhhHHHHHhcCChHHH
Q 037121 518 -CGKKNAVVAIFGLLL----SQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA-EDIQGTSTILKTSALPVI 591 (683)
Q Consensus 518 -~~~~~A~~aL~nLs~----~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa-~~~~~~~~i~~~g~i~~L 591 (683)
.+++.|+++|.||+. +++++..+++.|+++.|+++| .+.+..+++.|+++|+||+ .+++.+..+.+.|+++.|
T Consensus 232 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~L 310 (354)
T 3nmw_A 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML 310 (354)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHH-cCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHH
Confidence 489999999999996 777899999999999999999 6778899999999999999 589999999999999999
Q ss_pred HHhhccCCChHHHHHHHHHHHHHhcCChHHHH
Q 037121 592 IGLLQTLTSRAGKEYCVSILLSLCSNAREEVT 623 (683)
Q Consensus 592 v~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~ 623 (683)
+++|+++ ++..++.|+++|.+|+.+.+..+.
T Consensus 311 v~LL~s~-~~~i~~~A~~aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 311 KNLIHSK-HKMIAMGSAAALRNLMANRPAKYK 341 (354)
T ss_dssp HTTTTCS-SHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHhCC-CHHHHHHHHHHHHHHHcCCHHHHh
Confidence 9999998 899999999999999998765433
No 11
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.94 E-value=4.8e-26 Score=255.33 Aligned_cols=282 Identities=18% Similarity=0.175 Sum_probs=230.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-CchhhHHHHhcCChHHHHhhcCC-CCHHHHHHHHHHHHhhccCCchhh
Q 037121 377 LMSRFLARRLFFGTNEEKNKAAYEIRLLAKS-NIFNRSCIVESGAIPPLLNLLSS-PDQCVQENAVAALLKLSKHTSGKK 454 (683)
Q Consensus 377 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~q~~A~~aL~nLs~~~~~r~ 454 (683)
+.|+.||..|.+++.++|..|+++|++|+.. ++++|..+++.|+||+|+.+|.+ ++.+++++|+++|.|||.++++|.
T Consensus 90 G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~ 169 (584)
T 3l6x_A 90 KGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKM 169 (584)
T ss_dssp THHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHH
T ss_pred CCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhH
Confidence 4789999999999999999999999999985 68999999999999999999997 689999999999999999999999
Q ss_pred HHhhcCcHHHHHHHHc-----------------CCCCHHHHHHHHHHHHHhccCch-hHHHhhccCCChHHHHHhhhc--
Q 037121 455 VIVESGGLKVILKVLK-----------------SGLSLEARQIAAATLFYLTSVKG-YRKLIGETPKAIPALVKLIEE-- 514 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~-----------------~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~-- 514 (683)
.|++ |++++|+.+|. ...+.+++++|+++|+||+...+ ++..|....|+++.||.++++
T Consensus 170 ~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~ 248 (584)
T 3l6x_A 170 EIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEI 248 (584)
T ss_dssp HHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHH
T ss_pred HHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhh
Confidence 9995 57999999872 11146899999999999998764 477777645666677776643
Q ss_pred ------------------------------------------------------------------------CCHHHHHH
Q 037121 515 ------------------------------------------------------------------------GTDCGKKN 522 (683)
Q Consensus 515 ------------------------------------------------------------------------~~~~~~~~ 522 (683)
.++.+++.
T Consensus 249 ~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~ 328 (584)
T 3l6x_A 249 GQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEA 328 (584)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHH
T ss_pred cccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHH
Confidence 12344455
Q ss_pred HHHHHHHcccCCc-----hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhcc
Q 037121 523 AVVAIFGLLLSQG-----NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQT 597 (683)
Q Consensus 523 A~~aL~nLs~~~~-----n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~ 597 (683)
|++||.||+.... ++..+.+.|+++.|+++| .+++..++..|+++|.||+.++..+..| ..|+++.|+.+|.+
T Consensus 329 Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~ 406 (584)
T 3l6x_A 329 SAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL-TNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPG 406 (584)
T ss_dssp HHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSS
T ss_pred HHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcC
Confidence 5555666654331 223445568899999999 7788999999999999999988888776 67899999999987
Q ss_pred CC-------ChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcC--CHHHHHHHHHHHHHHHHhhh
Q 037121 598 LT-------SRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDG--TSQARKKARSLIKILHKFIE 663 (683)
Q Consensus 598 ~~-------s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g--~~~~k~~A~~lL~~l~~~~~ 663 (683)
+. +......|+++|.||+..+.+. .+.+.+ .|+++.|+.++.++ .+.+++.|+++|.+|-.+.+
T Consensus 407 ~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~-~~~I~~-~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 407 GQQNSSWNFSEDTVISILNTINEVIAENLEA-AKKLRE-TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp SSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH-HHHHHH-TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred CcccccccchHHHHHHHHHHHHHHhcCCHHH-HHHHHH-CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 62 3567889999999999877544 556665 89999999999987 88999999999999865443
No 12
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.94 E-value=3.4e-26 Score=264.67 Aligned_cols=282 Identities=17% Similarity=0.166 Sum_probs=243.3
Q ss_pred HHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcCchhhHHHH-hcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCC
Q 037121 374 AMKLMSRFLARRLFFG--TNEEKNKAAYEIRLLAKSNIFNRSCIV-ESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHT 450 (683)
Q Consensus 374 ~~~~~i~~Lv~~L~s~--~~~~~~~a~~~L~~La~~~~~~r~~i~-~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~ 450 (683)
+.+..++.+++.|.++ +.+.+..|++.|.+|+.. +..|..++ +.|+||.|+.+|++++..++..|+++|.||+...
T Consensus 374 ~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~ 452 (810)
T 3now_A 374 AALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAY 452 (810)
T ss_dssp HHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCS
T ss_pred cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCc
Confidence 4456788999999887 789999999999999984 56666666 5799999999999999999999999999999754
Q ss_pred c------------------------------hh---hHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHH
Q 037121 451 S------------------------------GK---KVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKL 497 (683)
Q Consensus 451 ~------------------------------~r---~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 497 (683)
+ ++ ..+++.|++++|+.+|.++ +..++++|+|+|.||+.+.+++..
T Consensus 453 d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~-s~~vqe~Aa~aL~NLA~d~~~r~~ 531 (810)
T 3now_A 453 EKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE-SHNSQELIARVLNAVCGLKELRGK 531 (810)
T ss_dssp CCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCC-CHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHH
Confidence 2 12 5677999999999999998 999999999999999999899999
Q ss_pred hhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhH---hhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC
Q 037121 498 IGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKV---LDAGTVPLLADILASSNRTELITDSLAVLANLAE 574 (683)
Q Consensus 498 i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i---v~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~ 574 (683)
+.. .|++|+|+.+|.++++.+++.|+++|.||+.+.+....+ ...|++++|+++|..+.+......|+.+|.||+.
T Consensus 532 Vv~-~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~ 610 (810)
T 3now_A 532 VVQ-EGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLAS 610 (810)
T ss_dssp HHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTT
T ss_pred HHH-CCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 998 999999999999999999999999999999875543222 1247999999999433344555789999999997
Q ss_pred C-hhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHH
Q 037121 575 D-IQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARS 653 (683)
Q Consensus 575 ~-~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~ 653 (683)
. ++.+..+++.|+++.|+.+|.++ ++.+++.|+.+|.||+.+. +.+..+..+.|+++.|+.++.+++..+|+.|+|
T Consensus 611 ~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L~NLa~~~--~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ 687 (810)
T 3now_A 611 MNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCLCNLVMSE--DVIKMFEGNNDRVKFLALLCEDEDEETATACAG 687 (810)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHHHHHTTSH--HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCh--HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHH
Confidence 5 67899999999999999999988 8999999999999999864 345555555799999999999999999999999
Q ss_pred HHHHHHHh
Q 037121 654 LIKILHKF 661 (683)
Q Consensus 654 lL~~l~~~ 661 (683)
+|.++...
T Consensus 688 ALanLt~~ 695 (810)
T 3now_A 688 ALAIITSV 695 (810)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhCC
Confidence 99999873
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=1.9e-24 Score=243.91 Aligned_cols=281 Identities=21% Similarity=0.250 Sum_probs=250.4
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCc-hhh
Q 037121 377 LMSRFLARRLFFGT-NEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTS-GKK 454 (683)
Q Consensus 377 ~~i~~Lv~~L~s~~-~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~-~r~ 454 (683)
+.++.|++.|.+++ ++.|..|++.|.+++..+++++..+.+.|++|.|+.+|.+++..+++.|+++|+||+.+.. ++.
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~ 196 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRD 196 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHH
Confidence 47899999999886 9999999999999999889999999999999999999999999999999999999998754 588
Q ss_pred HHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCC
Q 037121 455 VIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ 534 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 534 (683)
.++..|++++|+.+|....+..++.+|+++|.+|+........... .|++|.|+.++.++++.++..|+++|.+|+...
T Consensus 197 ~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 275 (528)
T 4b8j_A 197 LVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSNDEEVLTDACWALSYLSDGT 275 (528)
T ss_dssp HHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 8889999999999995544899999999999999987644444444 899999999999999999999999999999877
Q ss_pred chh-hhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHH
Q 037121 535 GNH-QKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILL 612 (683)
Q Consensus 535 ~n~-~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~ 612 (683)
++. ..+++.|+++.|+.+| .++++.++..|+.+|+||+. ++..+..+.+.|+++.|+.+|.++.++..+..|+++|.
T Consensus 276 ~~~~~~~~~~g~v~~Lv~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 276 NDKIQAVIEAGVCPRLVELL-LHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS 354 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHH-cCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 664 6778899999999999 77789999999999999986 67788889999999999999987547889999999999
Q ss_pred HHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHh
Q 037121 613 SLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 613 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 661 (683)
+|+.+... ....+.. .|+++.|+.++.++++.++..|.++|.++...
T Consensus 355 nl~~~~~~-~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 355 NITAGNKD-QIQAVIN-AGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHTSCHH-HHHHHHH-TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHH-HHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 99987644 4455555 79999999999999999999999999988765
No 14
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.93 E-value=2.8e-24 Score=242.74 Aligned_cols=283 Identities=18% Similarity=0.201 Sum_probs=251.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCC-----HHHHHHHHHHHHhhccCC
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPD-----QCVQENAVAALLKLSKHT 450 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d-----~~~q~~A~~aL~nLs~~~ 450 (683)
.+.++.|+..|.+++.+++..|++.|.+++.+++.+|..+.+.|++++|+.+|...+ ..++.+++++|.|++.+.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 240 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 240 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcc
Confidence 347899999999999999999999999999999999999999999999999998754 457889999999999887
Q ss_pred chhhH-HhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHH
Q 037121 451 SGKKV-IVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFG 529 (683)
Q Consensus 451 ~~r~~-i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n 529 (683)
..... ....|+++.|+.+|.++ +.+++..|+++|.+++.............|++|.|+.+|.+++..++..|+.+|.|
T Consensus 241 ~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~n 319 (529)
T 3tpo_A 241 NPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 319 (529)
T ss_dssp TTCCCHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhHHHHHHHHhcCC-cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHH
Confidence 66443 34578999999999998 89999999999999999877665555449999999999999999999999999999
Q ss_pred cccCCc-hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHH
Q 037121 530 LLLSQG-NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYC 607 (683)
Q Consensus 530 Ls~~~~-n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A 607 (683)
++...+ ....+++.|+++.|+.+| .++++.++..|+++|.||+. +++.+..+.+.|+++.|+.++.++ +..++..|
T Consensus 320 l~~~~~~~~~~i~~~g~l~~L~~LL-~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A 397 (529)
T 3tpo_A 320 IVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAA 397 (529)
T ss_dssp HTTSCHHHHHHHHHTTGGGGHHHHT-TCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHH
T ss_pred HHccchHHHHHHhhcccHHHHHHHH-cCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHH
Confidence 987654 578889999999999999 77889999999999999986 677888899999999999999998 89999999
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhh
Q 037121 608 VSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFI 662 (683)
Q Consensus 608 ~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 662 (683)
+++|.|++.++..+....+.+ .|+++.|+.++.+.++.+...+.+.|.++-+..
T Consensus 398 ~~aL~nl~~~~~~~~~~~l~~-~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 398 AWAITNYTSGGTVEQIVYLVH-CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp HHHHHHHHHHSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH-CcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 999999998765666666776 899999999999999999999999888776543
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=1.7e-24 Score=218.83 Aligned_cols=237 Identities=25% Similarity=0.317 Sum_probs=220.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccC-CchhhHH
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKH-TSGKKVI 456 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~-~~~r~~i 456 (683)
.++.|++.|.+++++.|..|++.|.+++..++.++..+.+.|+++.|+.+|.+++..++..|+++|.||+.+ ++++..+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 478899999999999999999999999998888999999999999999999999999999999999999988 6679999
Q ss_pred hhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhc-cCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCc
Q 037121 457 VESGGLKVILKVLKSGLSLEARQIAAATLFYLT-SVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQG 535 (683)
Q Consensus 457 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls-~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 535 (683)
++.|+++.|+.+|.++ +.+++..|+++|.+|+ ..++++..+.. .|+++.|++++.++++.++..|+++|.||+...+
T Consensus 83 ~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999988 8999999999999999 56677777777 8999999999999999999999999999998655
Q ss_pred -hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHH
Q 037121 536 -NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLS 613 (683)
Q Consensus 536 -n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~ 613 (683)
++..+++.|+++.|+.+| .++++.++..|+.+|.+|+. +++.+..+.+.|+++.|+++++++ ++..++.|+.+|.+
T Consensus 161 ~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 458889999999999999 67889999999999999986 778888999999999999999988 89999999999999
Q ss_pred HhcCC
Q 037121 614 LCSNA 618 (683)
Q Consensus 614 L~~~~ 618 (683)
|+...
T Consensus 239 l~~~~ 243 (252)
T 4hxt_A 239 IKSGG 243 (252)
T ss_dssp HHHTC
T ss_pred HHcCC
Confidence 99865
No 16
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=6.4e-25 Score=222.80 Aligned_cols=236 Identities=22% Similarity=0.282 Sum_probs=215.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhcc-CCchhhHH
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSK-HTSGKKVI 456 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~-~~~~r~~i 456 (683)
..+.++..|.+++++.|..|++.|+++...++.++..+.+.|++|.|+.+|.+++..++..|+++|.|++. +++++..+
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 46788899999999999999999977665577889999999999999999999999999999999999998 46679999
Q ss_pred hhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhH-HHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCC-
Q 037121 457 VESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYR-KLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ- 534 (683)
Q Consensus 457 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~- 534 (683)
++.|+++.|+.+|.++ +.++++.|+++|.+|+...+++ ..+.. .|++|.|++++.+++..++..|+++|.||+...
T Consensus 93 ~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 93 IDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 9999999999999998 8999999999999999999888 66666 999999999999999999999999999999865
Q ss_pred chhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhh-CChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHH
Q 037121 535 GNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA-EDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLS 613 (683)
Q Consensus 535 ~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa-~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~ 613 (683)
+++..+++.|+++.|+++| .++++.++..|+.+|.||+ .+++.+..+.+.|+++.|+++++++ ++..++.|+.+|.+
T Consensus 171 ~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGG-GCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHH-CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 4677888999999999999 6778999999999999998 4778889999999999999999988 89999999999999
Q ss_pred HhcC
Q 037121 614 LCSN 617 (683)
Q Consensus 614 L~~~ 617 (683)
|+.+
T Consensus 249 l~~~ 252 (252)
T 4db8_A 249 LQSH 252 (252)
T ss_dssp TC--
T ss_pred HhcC
Confidence 9863
No 17
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.93 E-value=3.7e-24 Score=240.63 Aligned_cols=281 Identities=18% Similarity=0.211 Sum_probs=249.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCC-----HHHHHHHHHHHHhhccCCc
Q 037121 377 LMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPD-----QCVQENAVAALLKLSKHTS 451 (683)
Q Consensus 377 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d-----~~~q~~A~~aL~nLs~~~~ 451 (683)
+.++.|+..|.+++.+++..|++.|.+++.+++.+|..+.+.|++++|+.+|.+.+ ..++.+++++|.|++.+..
T Consensus 143 GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~ 222 (510)
T 3ul1_B 143 GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 222 (510)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCS
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhccc
Confidence 47899999999999999999999999999999999999999999999999998754 4578899999999998876
Q ss_pred hhhHH-hhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHc
Q 037121 452 GKKVI-VESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGL 530 (683)
Q Consensus 452 ~r~~i-~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 530 (683)
....+ ...|+++.|+.+|.++ +.+++..|+++|.+|+....++..+....|+++.|+.+|.+++..++..|+.+|.|+
T Consensus 223 ~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl 301 (510)
T 3ul1_B 223 PAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301 (510)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHh
Confidence 64443 4578999999999998 899999999999999998776665555599999999999999999999999999999
Q ss_pred ccCCc-hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHH
Q 037121 531 LLSQG-NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCV 608 (683)
Q Consensus 531 s~~~~-n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~ 608 (683)
+...+ ++..+++.|+++.|+.+| .+++..++..|+++|.||+. +++.+..+.+.|+++.|+.++.++ +..++..|+
T Consensus 302 ~~~~~~~~~~i~~~g~l~~L~~LL-~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa 379 (510)
T 3ul1_B 302 VTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAA 379 (510)
T ss_dssp TTSCHHHHHHHHHTTGGGGCC-CT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHH
T ss_pred hcCCHHHHHHHhhccchHHHHHHh-cCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHH
Confidence 87665 577889999999999999 77889999999999999975 677888999999999999999998 999999999
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHh
Q 037121 609 SILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 609 ~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 661 (683)
++|.|++.++..+....+.+ .|+++.|+.++...++++...+.+.|.++-+.
T Consensus 380 ~aL~Nl~~~~~~~~~~~L~~-~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 380 WAITNYTSGGTVEQIVYLVH-CGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHHHHHHHHCCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHH-CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 99999998765666666776 89999999999999999999999988877554
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=1.2e-23 Score=237.41 Aligned_cols=279 Identities=19% Similarity=0.210 Sum_probs=246.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCc-hhhHHHHhcCChHHHHhhcCCCC-HHHHHHHHHHHHhhccC-Cch
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNI-FNRSCIVESGAIPPLLNLLSSPD-QCVQENAVAALLKLSKH-TSG 452 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s~d-~~~q~~A~~aL~nLs~~-~~~ 452 (683)
...++.|+..|.+++++.|..|++.|+.++.... .....+.+.|++|.|+.+|.+++ +.++..|+++|.|++.+ +++
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 3468999999999999999999999999976554 67788999999999999999976 99999999999999987 556
Q ss_pred hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc-hhHHHhhccCCChHHHHHhh-hcCCHHHHHHHHHHHHHc
Q 037121 453 KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVK-GYRKLIGETPKAIPALVKLI-EEGTDCGKKNAVVAIFGL 530 (683)
Q Consensus 453 r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nL 530 (683)
+..+++.|+++.|+.+|.++ +.++++.|+++|.+|+... .++..+.. .|+++.|+.++ .+.+..++..|+++|.||
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L 230 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGDSPKCRDLVLA-NGALLPLLAQLNEHTKLSMLRNATWTLSNF 230 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTCHHHHHHHHH-TTCHHHHHHTCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHH-CCcHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 88888999999999999998 8999999999999999764 45667776 89999999999 567889999999999999
Q ss_pred ccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCCh-hhHHHHHhcCChHHHHHhhccCCChHHHHHHHH
Q 037121 531 LLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDI-QGTSTILKTSALPVIIGLLQTLTSRAGKEYCVS 609 (683)
Q Consensus 531 s~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~ 609 (683)
+....+.......|+++.|+.+| .++++.++..|+.+|.+|+... .....+.+.|+++.|+.+|.++ ++.+++.|+.
T Consensus 231 ~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~ 308 (528)
T 4b8j_A 231 CRGKPQPSFEQTRPALPALARLI-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALR 308 (528)
T ss_dssp HCSSSCCCHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHH
T ss_pred HcCCCCCcHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHH
Confidence 99876666667789999999999 7788999999999999999754 4457888999999999999988 8999999999
Q ss_pred HHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcC-CHHHHHHHHHHHHHHHH
Q 037121 610 ILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDG-TSQARKKARSLIKILHK 660 (683)
Q Consensus 610 ~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g-~~~~k~~A~~lL~~l~~ 660 (683)
+|.+|+.+.+. ..+.+.. .|+++.|+.++.++ ++.+++.|+|+|.+|..
T Consensus 309 ~L~nl~~~~~~-~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 309 TVGNIVTGDDA-QTQCIID-HQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp HHHHHTTSCHH-HHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHH-HHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 99999997744 4555555 89999999999999 99999999999999875
No 19
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=4.8e-24 Score=215.51 Aligned_cols=241 Identities=23% Similarity=0.292 Sum_probs=219.2
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHHhhccCCc-hhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC-chhHH
Q 037121 419 GAIPPLLNLLSSPDQCVQENAVAALLKLSKHTS-GKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSV-KGYRK 496 (683)
Q Consensus 419 G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~-~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~-~~~~~ 496 (683)
|.+|.|+.+|.+++.+++..|+++|.+++.... ++..+++.|+++.|+.+|.++ +.+++..|+++|.+|+.. ++++.
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHH
Confidence 679999999999999999999999999998775 789999999999999999998 899999999999999998 67788
Q ss_pred HhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcc-cCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-
Q 037121 497 LIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLL-LSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE- 574 (683)
Q Consensus 497 ~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs-~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~- 574 (683)
.+.. .|+++.|+.++.++++.++..|+++|.||+ .+++++..+++.|+++.|+++| .++++.++..|+.+|++|+.
T Consensus 81 ~~~~-~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 81 AIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASG 158 (252)
T ss_dssp HHHH-TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcC
Confidence 8877 999999999999999999999999999999 5667889999999999999999 77789999999999999997
Q ss_pred ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHH
Q 037121 575 DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSL 654 (683)
Q Consensus 575 ~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~l 654 (683)
.+..+..+.+.|+++.|+.++.++ ++..++.|+.+|.+++.++ ....+.+.+ .|+++.|+.++.++++.+++.|.++
T Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~-~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~ 235 (252)
T 4hxt_A 159 PDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGP-TSAIKAIVD-AGGVEVLQKLLTSTDSEVQKEAQRA 235 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSB-HHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCC-HHHHHHHHH-CCCHHHHHHHHCCCcHHHHHHHHHH
Confidence 566778899999999999999987 8999999999999999865 445556665 8999999999999999999999999
Q ss_pred HHHHHHhhhhc
Q 037121 655 IKILHKFIETC 665 (683)
Q Consensus 655 L~~l~~~~~~~ 665 (683)
|.+|.......
T Consensus 236 L~~l~~~~~~~ 246 (252)
T 4hxt_A 236 LENIKSGGWLE 246 (252)
T ss_dssp HHHHHHTCBCC
T ss_pred HHHHHcCCCcc
Confidence 99998876543
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.92 E-value=4.7e-23 Score=226.76 Aligned_cols=280 Identities=20% Similarity=0.197 Sum_probs=245.8
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCc-hhh
Q 037121 377 LMSRFLARRLFFG-TNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTS-GKK 454 (683)
Q Consensus 377 ~~i~~Lv~~L~s~-~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~-~r~ 454 (683)
..++.|++.|.++ +++.|..|++.|.+++..++++...+.+.|++|.|+.+|.++++.+++.|+++|.|++.+.. .+.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 4789999999998 89999999999999999888888888899999999999999999999999999999998764 588
Q ss_pred HHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc-hhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccC
Q 037121 455 VIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVK-GYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLS 533 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 533 (683)
.+++.|+++.++.++.+..+.+++..|+++|.+|+... ........ .+++|.|+.++.++++.++..|+++|.+|+.+
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 88899999999999997448999999999999999764 22112222 68999999999999999999999999999986
Q ss_pred C-chhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHH
Q 037121 534 Q-GNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSIL 611 (683)
Q Consensus 534 ~-~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L 611 (683)
. ++...+++.|+++.|+.+| .+++..++..|+.+|++++. .+..+..+.+.|+++.|+.++.++ ++..+..|+++|
T Consensus 223 ~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L 300 (450)
T 2jdq_A 223 PNDKIQAVIDAGVCRRLVELL-MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTI 300 (450)
T ss_dssp SHHHHHHHHHTTTHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCcHHHHHHHH-CCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 5 4677888899999999999 67889999999999999986 455677788889999999999987 899999999999
Q ss_pred HHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHh
Q 037121 612 LSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 612 ~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 661 (683)
.+++.+.... .+.+.+ .|+++.|+.++.++++.+|..|+++|.++...
T Consensus 301 ~~l~~~~~~~-~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 301 SNITAGNRAQ-IQTVID-ANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHTTSCHHH-HHHHHH-TTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHH-HHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 9999876444 445555 79999999999999999999999999988653
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=2.4e-23 Score=235.01 Aligned_cols=279 Identities=20% Similarity=0.170 Sum_probs=248.8
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCC-chhh
Q 037121 377 LMSRFLARRLFFG-TNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHT-SGKK 454 (683)
Q Consensus 377 ~~i~~Lv~~L~s~-~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~-~~r~ 454 (683)
+.++.|+..|.++ ++++|..|++.|.+++..+++++..+.+.|++|.|+.+|.+++..+++.|+++|.||+.+. .++.
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~ 209 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 209 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchH
Confidence 4789999999987 8999999999999999988889999999999999999999999999999999999999875 5688
Q ss_pred HHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc-hhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccC
Q 037121 455 VIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVK-GYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLS 533 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 533 (683)
.++..|+++.|+.+|.+. +.+++..|+++|.+|+... ........ .+++|.|+.++.++++.++..|+++|.+|+..
T Consensus 210 ~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 210 YVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVV-SQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp HHHHTTCHHHHHHGGGSC-CHHHHHHHHHHHHHHHCCSSSCCCHHHH-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred HHHHcCcHHHHHHHhccC-CHHHHHHHHHHHHHHhCCCCCCCcHHHH-HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 888999999999999987 8999999999999999875 33334444 78999999999999999999999999999976
Q ss_pred Cc-hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHH
Q 037121 534 QG-NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSIL 611 (683)
Q Consensus 534 ~~-n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L 611 (683)
.. ....+++.|+++.|+.+| .+++..++..|+.+|++++. ++.....+.+.|+++.|+.+|.++ ++..+..|+++|
T Consensus 288 ~~~~~~~~~~~~~v~~Lv~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL 365 (530)
T 1wa5_B 288 PQEAIQAVIDVRIPKRLVELL-SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTI 365 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcHHHHHHHH-CCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 54 577788899999999999 67889999999999999985 567778888899999999999988 899999999999
Q ss_pred HHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHh
Q 037121 612 LSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 612 ~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 661 (683)
.+++.++... .+.+.. .|+++.|+.++.++++.++..|+++|.++...
T Consensus 366 ~~l~~~~~~~-~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 366 SNITAGNTEQ-IQAVID-ANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHTTSCHHH-HHHHHH-TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHH-HHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9999876444 444554 79999999999999999999999999988754
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=1e-22 Score=229.85 Aligned_cols=277 Identities=16% Similarity=0.209 Sum_probs=245.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-CchhhHHHHhcCChHHHHhhcCCC-CHHHHHHHHHHHHhhccCC-chhh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKS-NIFNRSCIVESGAIPPLLNLLSSP-DQCVQENAVAALLKLSKHT-SGKK 454 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s~-d~~~q~~A~~aL~nLs~~~-~~r~ 454 (683)
.++.|+..|.+++++.|..|+..|+.+... +..++..+.+.|++|.|+.+|.++ ++.++..|+++|.+++... +.+.
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 167 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 578999999999999999999999998654 245567788999999999999997 8999999999999999865 4577
Q ss_pred HHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc-hhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccC
Q 037121 455 VIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVK-GYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLS 533 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 533 (683)
.+++.|+++.|+.+|.++ +.++++.|+++|.+|+... +++..+.. .|+++.|+.++.+.+..++..|+++|.+|+.+
T Consensus 168 ~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 168 VVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDYVLQ-CNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCccchHHHHH-cCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence 888999999999999988 8999999999999999874 56777777 89999999999998899999999999999987
Q ss_pred C-chhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHH
Q 037121 534 Q-GNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSIL 611 (683)
Q Consensus 534 ~-~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L 611 (683)
. .........|+++.|+.+| .++++.++..|+.+|.+|+. .++....+.+.|+++.|+.+|.+. ++..++.|+.+|
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~v~~~a~~~L 323 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALRAV 323 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHH
T ss_pred CCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC-ChhhHHHHHHHH
Confidence 6 5666777789999999999 77789999999999999996 467788889999999999999987 899999999999
Q ss_pred HHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHH
Q 037121 612 LSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHK 660 (683)
Q Consensus 612 ~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 660 (683)
.+++.+.+. ..+.+.. .|+++.|+.++.++++.++..|+++|.++..
T Consensus 324 ~~l~~~~~~-~~~~~~~-~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 324 GNIVTGNDL-QTQVVIN-AGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp HHHTTSCHH-HHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHH-HHHHHHH-cchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 999988744 3444554 7999999999999999999999999999875
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=2.2e-22 Score=221.42 Aligned_cols=280 Identities=18% Similarity=0.188 Sum_probs=245.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC-CCHHHHHHHHHHHHhhccCC-c-hh
Q 037121 377 LMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS-PDQCVQENAVAALLKLSKHT-S-GK 453 (683)
Q Consensus 377 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~q~~A~~aL~nLs~~~-~-~r 453 (683)
+.++.|+..|.+++++++..|++.|.+++..++.++..+.+.|++|.|+.+|.+ .+..++..|+++|.||+.+. . .+
T Consensus 107 ~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 186 (450)
T 2jdq_A 107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPE 186 (450)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCC
Confidence 378899999999999999999999999999888899999999999999999996 78999999999999999765 3 33
Q ss_pred hHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc-hhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHccc
Q 037121 454 KVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVK-GYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLL 532 (683)
Q Consensus 454 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 532 (683)
..++ .|+++.|+.++.++ +.+++..++++|.+|+... +....+.. .|+++.|+.++.++++.++..|+++|.+|+.
T Consensus 187 ~~~~-~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 263 (450)
T 2jdq_A 187 FAKV-SPCLNVLSWLLFVS-DTDVLADACWALSYLSDGPNDKIQAVID-AGVCRRLVELLMHNDYKVVSPALRAVGNIVT 263 (450)
T ss_dssp GGGT-GGGHHHHHHHTTCC-CHHHHHHHHHHHHHHTSSSHHHHHHHHH-TTTHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHH-HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHCCCcHHHHHHHH-cCcHHHHHHHHCCCchhHHHHHHHHHHHHhh
Confidence 3444 88999999999988 8999999999999999865 44555555 8999999999999999999999999999998
Q ss_pred CCch-hhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHH
Q 037121 533 SQGN-HQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSI 610 (683)
Q Consensus 533 ~~~n-~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~ 610 (683)
..+. ...+++.|+++.|+.+| .++++.++..|+.+|.+++. +++....+.+.|+++.|+.++.++ ++.++..|+++
T Consensus 264 ~~~~~~~~~~~~~~l~~L~~ll-~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~ 341 (450)
T 2jdq_A 264 GDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWA 341 (450)
T ss_dssp SCHHHHHHHHTTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred CChHHHHHHHHCccHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHH
Confidence 7665 45678889999999999 67789999999999999985 777888889889999999999988 89999999999
Q ss_pred HHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhh
Q 037121 611 LLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFI 662 (683)
Q Consensus 611 L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 662 (683)
|.+++.+......+.+.. .|+++.|+.++.++++.++..|.++|..+....
T Consensus 342 L~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVE-LGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HHHHHHHCCHHHHHHHHH-HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHH-CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 999998633444455554 789999999999999999999999998776644
No 24
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.91 E-value=2.8e-23 Score=210.63 Aligned_cols=236 Identities=21% Similarity=0.314 Sum_probs=213.0
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHHhh-ccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhcc-CchhHH
Q 037121 419 GAIPPLLNLLSSPDQCVQENAVAALLKL-SKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTS-VKGYRK 496 (683)
Q Consensus 419 G~i~~Lv~lL~s~d~~~q~~A~~aL~nL-s~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~~ 496 (683)
...+.++.+|.++|.++|..|+++|.++ +.+++++..+++.|+++.|+.+|.++ +.+++..|+++|.+++. .++++.
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4678999999999999999999999775 45556688899999999999999998 79999999999999998 567788
Q ss_pred HhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchh-hhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-
Q 037121 497 LIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNH-QKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE- 574 (683)
Q Consensus 497 ~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~-~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~- 574 (683)
.+.. .|+++.|+.+|.++++.++..|+++|.||+.+.+++ ..+++.|+++.|+++| .+++..++..|+.+|.+|+.
T Consensus 91 ~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 91 AVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence 8877 899999999999999999999999999999999988 8999999999999999 77789999999999999996
Q ss_pred ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHH
Q 037121 575 DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSL 654 (683)
Q Consensus 575 ~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~l 654 (683)
.++.+..+.+.|+++.|++++.++ ++..++.|+.+|.+|+.+++ .....+.+ .|+++.|+.++.++++.+++.|.++
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~-~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~A~~~ 245 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGN-EQKQAVKE-AGALEKLEQLQSHENEKIQKEAQEA 245 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCH-HHHHHHHH-TTHHHHHHTTTTCSSSHHHHTHHHH
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCH-HHHHHHHH-CCcHHHHHHHhCCCCHHHHHHHHHH
Confidence 667788889999999999999988 89999999999999998764 44555655 8999999999999999999999999
Q ss_pred HHHHHH
Q 037121 655 IKILHK 660 (683)
Q Consensus 655 L~~l~~ 660 (683)
|.+|..
T Consensus 246 L~~l~~ 251 (252)
T 4db8_A 246 LEKLQS 251 (252)
T ss_dssp HHTTC-
T ss_pred HHHHhc
Confidence 987643
No 25
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=3.3e-23 Score=206.57 Aligned_cols=198 Identities=19% Similarity=0.144 Sum_probs=176.2
Q ss_pred HHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccC-Cch
Q 037121 376 KLMSRFLARRLFFGTN--EEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKH-TSG 452 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~--~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~-~~~ 452 (683)
+++++.||+.|.++++ +.|..|++.|++++..++.+|..+.+.|+||+|+++|++++.++|+.|+++|.||+.+ ++|
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 4578999999999988 8899999999999999999999999999999999999999999999999999999984 678
Q ss_pred hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhh---c-------------CC
Q 037121 453 KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIE---E-------------GT 516 (683)
Q Consensus 453 r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---~-------------~~ 516 (683)
|..|++.|+|++|+.+|.+..+.+++++|+++|++|+..++++..|.. +++|+|+.++. + .+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH--HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh--ccHHHHHHHHhccccCCcccccccccccch
Confidence 999999999999999998533899999999999999999999999987 47999999763 1 25
Q ss_pred HHHHHHHHHHHHHcccCC-chhhhHhhc-CcHHHHHHHHccC-----CChhHHHHHHHHHHHhhCC
Q 037121 517 DCGKKNAVVAIFGLLLSQ-GNHQKVLDA-GTVPLLADILASS-----NRTELITDSLAVLANLAED 575 (683)
Q Consensus 517 ~~~~~~A~~aL~nLs~~~-~n~~~iv~~-g~v~~Lv~lL~~~-----~~~~~~~~al~iL~nLa~~ 575 (683)
..++.+|..+|+||+..+ +++..+.+. |.|+.|+.+++.. .+...++.|+.+|.||+..
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 689999999999999854 789999886 7789999999531 3668899999999999863
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.89 E-value=6.9e-22 Score=222.22 Aligned_cols=280 Identities=14% Similarity=0.101 Sum_probs=246.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccC-CchhhH
Q 037121 377 LMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKH-TSGKKV 455 (683)
Q Consensus 377 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~-~~~r~~ 455 (683)
+.++.|+..|.+++++.+..|++.|.+++..++.++..+.+.|++|.|+.+|.+++.+++..++.+|.|++.. ++++..
T Consensus 101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~ 180 (529)
T 1jdh_A 101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 180 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4688999999999999999999999999998888899999999999999999999999999999999999975 566888
Q ss_pred HhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCc
Q 037121 456 IVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQG 535 (683)
Q Consensus 456 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 535 (683)
+.+.|+++.++.+|.++.....+..++.+|.+|+..++++..+.. .|+++.|+.++.++++..+..++++|.||+.+..
T Consensus 181 i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 259 (529)
T 1jdh_A 181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 259 (529)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCCh
Confidence 999999999999999886677788899999999999999999888 8999999999999999999999999999998764
Q ss_pred hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccC-CChHHHHHHHHHHHH
Q 037121 536 NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTL-TSRAGKEYCVSILLS 613 (683)
Q Consensus 536 n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~-~s~~~ke~A~~~L~~ 613 (683)
... ...|+++.|+++| .+.+++++..|+++|.+|+. +++.+..+.+.|+++.|++++... ..+..++.|+.+|.+
T Consensus 260 ~~~--~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~n 336 (529)
T 1jdh_A 260 KQE--GMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336 (529)
T ss_dssp TCS--CCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhH--HHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 422 2348999999999 77889999999999999987 467999999999999999999763 247899999999999
Q ss_pred HhcCCh--HHHHHHHhcCCCcHHHHHHhHhcCC-HHHHHHHHHHHHHHHHh
Q 037121 614 LCSNAR--EEVTASLAKDPSLMNSLYSLTTDGT-SQARKKARSLIKILHKF 661 (683)
Q Consensus 614 L~~~~~--~~~~~~l~~~~g~i~~L~~Ll~~g~-~~~k~~A~~lL~~l~~~ 661 (683)
|+.+.+ +..+..+.. .|+++.|+.++.++. +.+++.|+|+|.++...
T Consensus 337 l~~~~~~~~~~~~~i~~-~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 337 LTSRHQEAEMAQNAVRL-HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp HTSSSTTHHHHHHHHHH-TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHcCCchHHHHHHHHHH-cCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence 998643 234555665 789999999999886 58999999999988754
No 27
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=202.42 Aligned_cols=195 Identities=13% Similarity=0.208 Sum_probs=174.0
Q ss_pred ChHHHHhhcCCCCH--HHHHHHHHHHHhhcc-CCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhcc-CchhH
Q 037121 420 AIPPLLNLLSSPDQ--CVQENAVAALLKLSK-HTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTS-VKGYR 495 (683)
Q Consensus 420 ~i~~Lv~lL~s~d~--~~q~~A~~aL~nLs~-~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~~~ 495 (683)
.+|.|+++|.++|. ++|..|+++|.||+. ++++|..|++.|+|++|+.+|+++ +.++++.|+++|.||+. +++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-NEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHH
Confidence 58999999999888 999999999999995 567799999999999999999998 89999999999999998 57899
Q ss_pred HHhhccCCChHHHHHhhh-cCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHc---c------------CCCh
Q 037121 496 KLIGETPKAIPALVKLIE-EGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILA---S------------SNRT 559 (683)
Q Consensus 496 ~~i~~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~---~------------~~~~ 559 (683)
..|.. .|+||.|+++|. +++..+++.|+.+|+||+.+++++..+++. ++++|++++. + ..+.
T Consensus 88 ~~I~~-~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~ 165 (233)
T 3tt9_A 88 LEVAE-LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF 165 (233)
T ss_dssp HHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred HHHHH-cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence 99998 999999999998 478999999999999999999999999875 6999998762 0 1256
Q ss_pred hHHHHHHHHHHHhhC-ChhhHHHHHhcCC-hHHHHHhhccC-----CChHHHHHHHHHHHHHhcC
Q 037121 560 ELITDSLAVLANLAE-DIQGTSTILKTSA-LPVIIGLLQTL-----TSRAGKEYCVSILLSLCSN 617 (683)
Q Consensus 560 ~~~~~al~iL~nLa~-~~~~~~~i~~~g~-i~~Lv~lL~~~-----~s~~~ke~A~~~L~~L~~~ 617 (683)
.+.+.|.++|.||+. ++++|..|.+.+| |+.|+.+++.+ .+.+.+|+|+.+|.|||.+
T Consensus 166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 899999999999986 6799999999876 89999999863 2567999999999999975
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.89 E-value=2.5e-22 Score=225.88 Aligned_cols=277 Identities=19% Similarity=0.161 Sum_probs=244.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHh-cCChHHHHhhcCC-CCHHHHHHHHHHHHhhccCCchh
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVE-SGAIPPLLNLLSS-PDQCVQENAVAALLKLSKHTSGK 453 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s-~d~~~q~~A~~aL~nLs~~~~~r 453 (683)
.+.++.|+..|.++++.+|..|+..|.+++.. ..++..+.. .|++++|+.+|.+ ++.+++..|+.+|.+|+.+++++
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcC-CccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 34689999999999999999999999999985 456666665 4899999999975 48999999999999999998899
Q ss_pred hHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc-hhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHccc
Q 037121 454 KVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVK-GYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLL 532 (683)
Q Consensus 454 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 532 (683)
..+.+.|+++.|+.+|.++ +.+++..|+++|.+|+..+ +.+..+.. .|++|.|++++.+++...+..++.+|.+|+.
T Consensus 95 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 95 LAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHH-HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999998 8999999999999999874 45556656 8999999999999999999999999999998
Q ss_pred C-CchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHH
Q 037121 533 S-QGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSIL 611 (683)
Q Consensus 533 ~-~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L 611 (683)
. ++++..+++.|+++.|+++|...........++.+|.+|+.+++.+..+.+.|+++.|+.++.++ ++..+++|+++|
T Consensus 173 ~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~a~~~L 251 (529)
T 1jdh_A 173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTL 251 (529)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS-CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC-ChHHHHHHHHHH
Confidence 5 56788999999999999999666667788889999999999999999999999999999999988 899999999999
Q ss_pred HHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHh
Q 037121 612 LSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 612 ~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 661 (683)
.+||...+.. .. ..|+++.|+.++.++++.++..|+++|.+|...
T Consensus 252 ~~l~~~~~~~----~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 252 RNLSDAATKQ----EG-MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp HHHHTTCTTC----SC-CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHhcCChhh----HH-HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 9999875321 11 246899999999999999999999999988653
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.89 E-value=4.4e-22 Score=230.15 Aligned_cols=276 Identities=19% Similarity=0.168 Sum_probs=244.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHh-cCChHHHHhhcCCC-CHHHHHHHHHHHHhhccCCchhh
Q 037121 377 LMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVE-SGAIPPLLNLLSSP-DQCVQENAVAALLKLSKHTSGKK 454 (683)
Q Consensus 377 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~-d~~~q~~A~~aL~nLs~~~~~r~ 454 (683)
+.++.|+..|.+.++.+|..|+..|.+++..+ .++..+.. .|+++.|+.+|.++ +.+++..|+.+|.+|+.+++++.
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~ 92 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL 92 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHH
Confidence 36889999999999999999999999999865 46666665 48999999999864 89999999999999999988999
Q ss_pred HHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCc-hhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHccc-
Q 037121 455 VIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVK-GYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLL- 532 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~- 532 (683)
.+.+.|+++.|+.+|.++ +..++..|+++|.+|+... ..+..+.. .|++|.|+++|.+++.+.+..++.+|.+|+.
T Consensus 93 ~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHH-CCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999998 8999999999999999875 45555656 8999999999999999888889999999996
Q ss_pred CCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHH
Q 037121 533 SQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILL 612 (683)
Q Consensus 533 ~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~ 612 (683)
+++++..+++.|+++.|+++|........+..++.+|.||+.+++.+..+.+.|+++.|+.++..+ ++..++.|+++|.
T Consensus 171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~-~~~~~~~a~~~L~ 249 (644)
T 2z6h_A 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLR 249 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCS-CHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence 667899999999999999999655567788999999999999999999999999999999999988 8999999999999
Q ss_pred HHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHh
Q 037121 613 SLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 613 ~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 661 (683)
+||...... .. ..|+++.|+.++.++++.++..|+++|.+|...
T Consensus 250 nL~~~~~~~----~~-~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 250 NLSDAATKQ----EG-MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp HHGGGCTTC----CS-CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHhhcchhh----hh-hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 999875321 11 146899999999999999999999999988764
No 30
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.88 E-value=3e-21 Score=223.19 Aligned_cols=280 Identities=14% Similarity=0.099 Sum_probs=245.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhcc-CCchhhH
Q 037121 377 LMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSK-HTSGKKV 455 (683)
Q Consensus 377 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~-~~~~r~~ 455 (683)
+.++.|+..|.+++++.|..|++.|.+++..++.++..+.+.|++|.|+.+|.+++..++..++.+|.+|+. +++++..
T Consensus 98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~ 177 (644)
T 2z6h_A 98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 177 (644)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 367899999999999999999999999999888888899999999999999999999999999999999996 6677999
Q ss_pred HhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCc
Q 037121 456 IVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQG 535 (683)
Q Consensus 456 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 535 (683)
+.+.|+++.|+.+|.++.....+..++.+|.+|+...+++..+.. .|+++.|+.++.+++...+..++++|.||+....
T Consensus 178 i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~-~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~ 256 (644)
T 2z6h_A 178 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 256 (644)
T ss_dssp HHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHH-TTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCT
T ss_pred HHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcch
Confidence 999999999999999875678889999999999999999999988 8999999999999999999999999999997654
Q ss_pred hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCC-hHHHHHHHHHHHH
Q 037121 536 NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTS-RAGKEYCVSILLS 613 (683)
Q Consensus 536 n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s-~~~ke~A~~~L~~ 613 (683)
.. ....|+++.|+++| .+.+..++..|+.+|.+|+. +++.+..+.+.|+++.|++++.+..+ +.+++.|+.+|.+
T Consensus 257 ~~--~~~~~~i~~Lv~lL-~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~n 333 (644)
T 2z6h_A 257 KQ--EGMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 333 (644)
T ss_dssp TC--CSCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hh--hhhhhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 32 22348999999999 67789999999999999987 46889999999999999999986423 7899999999999
Q ss_pred HhcCChH--HHHHHHhcCCCcHHHHHHhHhcCC-HHHHHHHHHHHHHHHHh
Q 037121 614 LCSNARE--EVTASLAKDPSLMNSLYSLTTDGT-SQARKKARSLIKILHKF 661 (683)
Q Consensus 614 L~~~~~~--~~~~~l~~~~g~i~~L~~Ll~~g~-~~~k~~A~~lL~~l~~~ 661 (683)
|+...++ ..+..+.. .|+++.|+.++.+++ +.+++.|+++|.+|...
T Consensus 334 L~~~~~~~~~~q~~v~~-~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~ 383 (644)
T 2z6h_A 334 LTSRHQEAEMAQNAVRL-HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 383 (644)
T ss_dssp HTSSSTTHHHHHHHHHH-TTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HhcCCchHHHHHHHHHH-ccChHHHHHHhCccCchHHHHHHHHHHHHHccC
Confidence 9985432 33444555 789999999999875 68999999999988754
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.87 E-value=2.9e-21 Score=227.58 Aligned_cols=272 Identities=19% Similarity=0.207 Sum_probs=229.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIV 457 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~ 457 (683)
.++.++..|.+++.+.+..++..|+.. ++..+. .|++|.|+.+|.+++..+|++|+.+|.+|+.++.++..++
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~------~~~~i~-~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~ 188 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQ------DDAELA-TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM 188 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHT
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhh------hHHHHH-hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 478899999999988888888887744 334444 8999999999999999999999999999999988888888
Q ss_pred h-cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCc-
Q 037121 458 E-SGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQG- 535 (683)
Q Consensus 458 ~-~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~- 535 (683)
. .|+++.|+.+|.++.+.+++.+|+.+|.+|+...+++..++. .|+++.|+.+|.++++.++..|+++|.||+.+.+
T Consensus 189 ~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~-~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 267 (780)
T 2z6g_A 189 RSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK-SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267 (780)
T ss_dssp TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred hccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh
Confidence 4 589999999998765889999999999999999999989988 7999999999999999999999999999999854
Q ss_pred hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHH
Q 037121 536 NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSL 614 (683)
Q Consensus 536 n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L 614 (683)
.+..+++.|+++.|+++| .+++..+...++.+|.+|+. +++++..+.+.|+++.|+++++.+.....++.|+.+|.+|
T Consensus 268 ~~~~v~~~g~v~~Lv~lL-~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 346 (780)
T 2z6g_A 268 AKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 346 (780)
T ss_dssp HHHHHHHTTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 566677899999999999 66788899999999999985 7899999999999999999999874556788999999999
Q ss_pred hcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHh
Q 037121 615 CSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 615 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 661 (683)
+... .....+.. .|+++.|+.++.++++..++.|.++|..|.+.
T Consensus 347 s~~~--~~~~~i~~-~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~ 390 (780)
T 2z6g_A 347 SVCS--SNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 390 (780)
T ss_dssp HTST--THHHHHHH-TTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTT
T ss_pred hcCh--HHHHHHHH-hchHHHHHHHHcCCchHHHHHHHHHHHHHhcc
Confidence 9864 23455555 79999999999999999999999999988754
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.6e-21 Score=221.61 Aligned_cols=283 Identities=13% Similarity=0.175 Sum_probs=234.4
Q ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcCc--------------------------------------hhhHHH
Q 037121 375 MKLMSRFLARRLFF-GTNEEKNKAAYEIRLLAKSNI--------------------------------------FNRSCI 415 (683)
Q Consensus 375 ~~~~i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~--------------------------------------~~r~~i 415 (683)
.+..+..|++.+++ .+......++..|.|++...+ .++..+
T Consensus 374 d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l 453 (778)
T 3opb_A 374 NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI 453 (778)
T ss_dssp CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH
Confidence 34567888888874 566677888888888775322 157788
Q ss_pred HhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHH---HHHHHHHHHHHhccCc
Q 037121 416 VESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLE---ARQIAAATLFYLTSVK 492 (683)
Q Consensus 416 ~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e---~~~~Aa~~L~~Ls~~~ 492 (683)
.++|+||+|+.+++++++.+|+.|+++|+||+.+.++|..+++.|++++|+.+|.++ +.. .+++|+.+|.+|+...
T Consensus 454 ~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~-~~~~~~~k~~AA~ALArLlis~ 532 (778)
T 3opb_A 454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANK-QDIGEPIRILGCRALTRMLIFT 532 (778)
T ss_dssp TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC----CCHHHHHHHHHHHHHHHTS
T ss_pred HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CCcchHHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999999999999999988 433 8999999999999877
Q ss_pred hhHHHhhc--cCCChHHHHHhhhc--CCH------------HHHHHHHHHHHHcccCCch-----hhhHhhc-CcHHHHH
Q 037121 493 GYRKLIGE--TPKAIPALVKLIEE--GTD------------CGKKNAVVAIFGLLLSQGN-----HQKVLDA-GTVPLLA 550 (683)
Q Consensus 493 ~~~~~i~~--~~g~i~~Lv~lL~~--~~~------------~~~~~A~~aL~nLs~~~~n-----~~~iv~~-g~v~~Lv 550 (683)
++...+.. ..|+|++|+.+|.. +.. ..+..|+.||.||+..++| +.++++. |+++.|.
T Consensus 533 np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~ 612 (778)
T 3opb_A 533 NPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE 612 (778)
T ss_dssp CHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred CHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence 76665532 24899999999983 111 2377999999999998743 7888986 9999999
Q ss_pred HHHccCCChhHHHHHHHHHHHhhCChhhH-HHHHhcC------ChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHH
Q 037121 551 DILASSNRTELITDSLAVLANLAEDIQGT-STILKTS------ALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVT 623 (683)
Q Consensus 551 ~lL~~~~~~~~~~~al~iL~nLa~~~~~~-~~i~~~g------~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~ 623 (683)
.+| .+++..++..|+.++.||+.+++++ ..+...+ .++.|+.+++.+ +...|.+|.++|.+++... +.+.
T Consensus 613 ~LL-~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~-~~ia 689 (778)
T 3opb_A 613 NLM-LDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTI-PLIA 689 (778)
T ss_dssp HGG-GCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHC-HHHH
T ss_pred HHH-hCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCC-hHHH
Confidence 999 6778899999999999999988875 3554322 378899999987 9999999999999998655 4556
Q ss_pred HHHhcCCCcHHHHHHhHhc--CCHHHHHHHHHHHHHHHHh
Q 037121 624 ASLAKDPSLMNSLYSLTTD--GTSQARKKARSLIKILHKF 661 (683)
Q Consensus 624 ~~l~~~~g~i~~L~~Ll~~--g~~~~k~~A~~lL~~l~~~ 661 (683)
+.+.+..++++.|+.++++ +++.++.++..++.+|..+
T Consensus 690 ~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 690 KELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 6677645799999999999 8999999999999999874
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=5.9e-21 Score=188.03 Aligned_cols=197 Identities=22% Similarity=0.294 Sum_probs=177.5
Q ss_pred HhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccC-CchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhcc-Cch
Q 037121 416 VESGAIPPLLNLLSSPDQCVQENAVAALLKLSKH-TSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTS-VKG 493 (683)
Q Consensus 416 ~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~-~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~-~~~ 493 (683)
...|..|.|+.+|.++|..++..|+++|.+++.. ++++..+++.|+++.|+.+|.++ +.++++.|+++|.+|+. .++
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcH
Confidence 4468899999999999999999999999999954 55688899999999999999998 89999999999999995 556
Q ss_pred hHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCc-hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHh
Q 037121 494 YRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQG-NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANL 572 (683)
Q Consensus 494 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nL 572 (683)
++..+.. .|++|.|+.+|.++++.++..|+++|.||+.+.+ .+..+++.|+++.|+++| .+++..++..|+.+|.||
T Consensus 88 ~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 88 QIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHH
Confidence 7777777 9999999999999999999999999999997554 567889999999999999 677899999999999999
Q ss_pred hCC-hhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 037121 573 AED-IQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCS 616 (683)
Q Consensus 573 a~~-~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~ 616 (683)
+.. ++.+..+.+.|+++.|++++.++ ++..++.|+.+|.+|+.
T Consensus 166 ~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 166 ASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred HcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence 975 88899999999999999999987 99999999999999986
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=5.7e-21 Score=188.14 Aligned_cols=194 Identities=21% Similarity=0.284 Sum_probs=178.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccC-CchhhHH
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKH-TSGKKVI 456 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~-~~~r~~i 456 (683)
..+.|+..|.+.+++.+..|++.|.+++..++.++..+.+.|++|.|+.+|.+++..++..|+++|.||+.+ +.++..+
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 567888999999999999999999999988999999999999999999999999999999999999999964 5668889
Q ss_pred hhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch-hHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccC-C
Q 037121 457 VESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKG-YRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLS-Q 534 (683)
Q Consensus 457 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~ 534 (683)
++.|+++.|+.+|.++ +..++..|+++|.+|+.... .+..+.. .|+++.|++++.+++..++..|+++|.||+.+ +
T Consensus 93 ~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 93 IDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 9999999999999999 89999999999999997554 4556666 89999999999999999999999999999987 5
Q ss_pred chhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC
Q 037121 535 GNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE 574 (683)
Q Consensus 535 ~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~ 574 (683)
+++..+++.|+++.|++++ .++++.+++.|+.+|.+|+.
T Consensus 171 ~~~~~~~~~g~i~~L~~ll-~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQ-SHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHhc
Confidence 6788899999999999999 77899999999999999985
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.86 E-value=2e-20 Score=220.53 Aligned_cols=280 Identities=14% Similarity=0.102 Sum_probs=244.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhcc-CCchhhH
Q 037121 377 LMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSK-HTSGKKV 455 (683)
Q Consensus 377 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~-~~~~r~~ 455 (683)
+.++.|+..|.++++..+..|++.|.+++..+..++..+.+.|++|.|+.+|.+++..++..|+.+|.+++. +++++..
T Consensus 234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~ 313 (780)
T 2z6g_A 234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 313 (780)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHH
Confidence 468999999999999999999999999999888889999999999999999999999999999999999996 4567999
Q ss_pred HhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCc
Q 037121 456 IVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQG 535 (683)
Q Consensus 456 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 535 (683)
+++.|+++.|+.+|+++.....++.++.+|.+|+....++..+.. .|+++.|+.++.+++...+..|+++|.+|+....
T Consensus 314 i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~ 392 (780)
T 2z6g_A 314 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 392 (780)
T ss_dssp HHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHH-TTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHH-hchHHHHHHHHcCCchHHHHHHHHHHHHHhccch
Confidence 999999999999999885666778899999999999899999988 8999999999999999999999999999997664
Q ss_pred hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCC-hHHHHHHHHHHHH
Q 037121 536 NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTS-RAGKEYCVSILLS 613 (683)
Q Consensus 536 n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s-~~~ke~A~~~L~~ 613 (683)
.. ....++++.|+++| .+.+..++..|+.+|.+|+. .++.+..+.+.|+++.|+++|....+ +.+++.|+.+|.+
T Consensus 393 ~~--~~~~~~i~~Lv~lL-~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~n 469 (780)
T 2z6g_A 393 KQ--EGMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 469 (780)
T ss_dssp TC--SCCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hh--hhhhhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 32 22357899999999 77889999999999999987 46788999999999999998876313 4899999999999
Q ss_pred HhcCChH--HHHHHHhcCCCcHHHHHHhHhcCCH-HHHHHHHHHHHHHHHh
Q 037121 614 LCSNARE--EVTASLAKDPSLMNSLYSLTTDGTS-QARKKARSLIKILHKF 661 (683)
Q Consensus 614 L~~~~~~--~~~~~l~~~~g~i~~L~~Ll~~g~~-~~k~~A~~lL~~l~~~ 661 (683)
|+....+ ..+..+.. .|+++.|+.++.+++. .+++.|+++|.+|...
T Consensus 470 L~~~~~~~~~~~~~v~~-~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~ 519 (780)
T 2z6g_A 470 LTSRHQDAEMAQNAVRL-HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 519 (780)
T ss_dssp TTSSSTTHHHHHHHHHH-TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS
T ss_pred HHhcCchHHHHHHHHHH-cCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC
Confidence 9975432 23345554 7889999999998875 8999999999998754
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.81 E-value=1.7e-18 Score=179.70 Aligned_cols=223 Identities=17% Similarity=0.198 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHh-hcCCCCHHHHHHHHHHHHhhccCCc-hhhHHhhcCcHHHHHHH
Q 037121 391 NEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLN-LLSSPDQCVQENAVAALLKLSKHTS-GKKVIVESGGLKVILKV 468 (683)
Q Consensus 391 ~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~-lL~s~d~~~q~~A~~aL~nLs~~~~-~r~~i~~~g~i~~Lv~l 468 (683)
.+.+..|+..|..++. +.++...+...|++|+|+. +|.++++.+++.|+++|+|++.+++ .+..+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4678899999999998 5678888999999999999 9999999999999999999998765 58888899999999999
Q ss_pred HcCCCCHHHHHHHHHHHHHhccCchh-HHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccC-CchhhhHhhcCcH
Q 037121 469 LKSGLSLEARQIAAATLFYLTSVKGY-RKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLS-QGNHQKVLDAGTV 546 (683)
Q Consensus 469 L~~~~~~e~~~~Aa~~L~~Ls~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~~g~v 546 (683)
|+++.+.+++++|+|+|.+|+.+... ...+.. .|++|.|+.+|.+++..+++.|+|+|.||+.. ++.+..+++.|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~-~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLR-LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCH
Confidence 99754789999999999999976544 556666 89999999999999999999999999999875 5578999999999
Q ss_pred HHHHHHHccCCChhHHHHHHHHHHHhhCC-hhhHHHHHhc-CChHHHH----HhhccCC-ChHHHHHHHHHHHHHhc
Q 037121 547 PLLADILASSNRTELITDSLAVLANLAED-IQGTSTILKT-SALPVII----GLLQTLT-SRAGKEYCVSILLSLCS 616 (683)
Q Consensus 547 ~~Lv~lL~~~~~~~~~~~al~iL~nLa~~-~~~~~~i~~~-g~i~~Lv----~lL~~~~-s~~~ke~A~~~L~~L~~ 616 (683)
+.|+.+| .+++..+++.|+.+|.+|+.. +......... ..+..++ +-++... .....+.|..++-++..
T Consensus 212 ~~Lv~LL-~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 212 QQLVALV-RTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHH-TSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHH-cCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 9999999 778899999999999999875 3333333221 1222222 2222111 23556667776655543
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.1e-18 Score=198.39 Aligned_cols=278 Identities=13% Similarity=0.136 Sum_probs=226.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhc-CChHHHHhhcCC-CCHHHHHHHHHHHHhhccCCc----
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVES-GAIPPLLNLLSS-PDQCVQENAVAALLKLSKHTS---- 451 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~-G~i~~Lv~lL~s-~d~~~q~~A~~aL~nLs~~~~---- 451 (683)
.++.+++.|.+++.+.+..|++.|..++. +++.|..+++. |+++.|+.++++ ++..+...++.+|.||+.+.+
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~ 413 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXX 413 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccch
Confidence 67888899988887789999999999998 56778888875 789999999995 788899999999999975322
Q ss_pred -----------------------------------hhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHH
Q 037121 452 -----------------------------------GKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRK 496 (683)
Q Consensus 452 -----------------------------------~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~ 496 (683)
++..+++.|+++.|+.++.++ +...++.|+++|.+|+.+.+++.
T Consensus 414 e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~-s~~~re~A~~aL~nLS~d~~~R~ 492 (778)
T 3opb_A 414 XXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNL-SPNCKQQVVRIIYNITRSKNFIP 492 (778)
T ss_dssp CCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGS-CHHHHHHHHHHHHHHHTSGGGHH
T ss_pred hhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHH
Confidence 345667999999999999998 99999999999999999999999
Q ss_pred HhhccCCChHHHHHhhhcCCHH---HHHHHHHHHHHcccCCchhhhHh--h-cCcHHHHHHHHccCCCh-----------
Q 037121 497 LIGETPKAIPALVKLIEEGTDC---GKKNAVVAIFGLLLSQGNHQKVL--D-AGTVPLLADILASSNRT----------- 559 (683)
Q Consensus 497 ~i~~~~g~i~~Lv~lL~~~~~~---~~~~A~~aL~nLs~~~~n~~~iv--~-~g~v~~Lv~lL~~~~~~----------- 559 (683)
.+.. .|+++.|+.++.+++.. ++..|+.||.+|....+....+- . .|+|++|+++|..++..
T Consensus 493 ~lvq-qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 493 QLAQ-QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHH-TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHH-CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 9999 99999999999987654 89999999999997666443321 1 39999999999422211
Q ss_pred --hHHHHHHHHHHHhhCCh-----hhHHHHHhc-CChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCC-
Q 037121 560 --ELITDSLAVLANLAEDI-----QGTSTILKT-SALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDP- 630 (683)
Q Consensus 560 --~~~~~al~iL~nLa~~~-----~~~~~i~~~-g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~- 630 (683)
--...|+.+|.|||+.+ +.+..|++. |+++.|..+|.+. +..++..|+.+++||+.+. +...+.+....
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~-n~~VrrAA~elI~NL~~~~-e~i~~k~~~~~~ 649 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE-NVPLQRSTLELISNMMSHP-LTIAAKFFNLEN 649 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHTSG-GGTGGGTSCCSS
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC-CHHHHHHHHHHHHHHhCCc-HHHHHHHHhhcC
Confidence 12678999999999865 457888885 8999999999887 8899999999999999864 22112232111
Q ss_pred ----CcHHHHHHhHhcCCHHHHHHHHHHHHHHHH
Q 037121 631 ----SLMNSLYSLTTDGTSQARKKARSLIKILHK 660 (683)
Q Consensus 631 ----g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 660 (683)
+.++.|+.|+..++...|+.|+++|.++..
T Consensus 650 ~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 650 PQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683 (778)
T ss_dssp HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 137899999999999999999999999953
No 38
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.78 E-value=1.4e-19 Score=151.35 Aligned_cols=72 Identities=33% Similarity=0.474 Sum_probs=68.8
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHHHHHHHhcC
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLIHQFCADNG 347 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~ 347 (683)
.+|++|.||||+++|.|||+++|||+|||.||++|+.. +.+||.|++++...++.||..++++|+.|+.+++
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 67999999999999999999999999999999999996 7899999999999999999999999999998875
No 39
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.77 E-value=6e-19 Score=173.83 Aligned_cols=213 Identities=13% Similarity=0.119 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHHHhhcC----CCCCcccchhHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHhhhcCCCCCChHH
Q 037121 120 IATQFRVLIRAIATALDVF----PLDTVDICGEVKELVDLVAKQARKAKFELDKEDERAMKRVLSILNYFEKGIEPDSGF 195 (683)
Q Consensus 120 i~~~f~~~~~~l~~~L~~l----p~~~l~ls~ev~e~v~l~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 195 (683)
++..++.+.++|..+|.+| +....++++.|++. ...-+++..-+.+.+.-+..+......+-++.+.....+.+.
T Consensus 30 ~s~~~~~~~~q~~~~l~~~~~~~~~~~~~~~~~v~~l-~~~y~~l~~~~~~~~~~~~~~~~~K~~yk~~~d~~~~~~~~t 108 (267)
T 3htk_C 30 LSNIYQQCYKQIDETINQLVDSTSPSTIGIEEQVADI-TSTYKLLSTYESESNSFDEHIKDLKKNFKQSSDACPQIDLST 108 (267)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCCCSSCSHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHH
Confidence 4555566666666666665 44445677777764 334455666666667777777777777777778889999999
Q ss_pred HHHHHHh-cCCCChHHHHHHHHHHHHHHHhhhcCCccchhchHHHHHHHHhhhhhhhccccccccccchhhcccccccCC
Q 037121 196 MTWVLDY-LEIKSWSDCNSEIKFLEELVALECSDSEEREVPFLSSLVGFMSYCRVVIFETLDYRSSDQIDVRCNMETLSC 274 (683)
Q Consensus 196 l~~~~~~-l~l~~~~~~~~E~~~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (683)
|.+++++ +++++.+.+..+...... ............+..++..+......+.+...+.++ .+..-.
T Consensus 109 wd~y~~~e~~ap~l~~~~~~~~~~~~----~~~~~~~~~~~~lk~~~~i~~~P~~~lPd~~~~~dD--------DDI~v~ 176 (267)
T 3htk_C 109 WDKYRTGELTAPKLSELYLNMPTPEP----ATMVNNTDTLKILKVLPYIWNDPTCVIPDLQNPADE--------DDLQIE 176 (267)
T ss_dssp HHHHHHTSSCCCCHHHHHHTCCCCSC----CSCCCCCHHHHHHHHHHHHHHCTTBCCCCCSSTTCS--------SCCCCC
T ss_pred HHHHhcCCcCCchHHHHHHhccccCc----ccccccchHHHHHHHccccccCCCCCCCCCCCCCCC--------ccceec
Confidence 9999988 999998876664211000 000011223455666666666555544432111111 011112
Q ss_pred CCCCCccCCCCcccCCCceec-cCcccccHHHHHHHHHh-CCCCCCC--CCcccCCCCCCCcHHHHHHHHHHHHh
Q 037121 275 LNPEDFRCPISLELMTDPVTV-STGQTYDRSSIQKWLKA-GNMLCPK--TGEKLTNTELLPNTTLKKLIHQFCAD 345 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~-~cght~~r~cI~~w~~~-~~~~CP~--c~~~l~~~~l~pn~~l~~~i~~~~~~ 345 (683)
....+|.||||+++|.|||+. .|||+|||.||.+||.. |...||+ |++.+...++.||..|+++|+.|..+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 457899999999999999985 99999999999999987 4578999 99999999999999999999998764
No 40
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.77 E-value=2e-19 Score=154.83 Aligned_cols=73 Identities=33% Similarity=0.459 Sum_probs=69.4
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHHHHHHHhcCc
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLIHQFCADNGI 348 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 348 (683)
.+|++|.||||+++|.|||+++|||+|||.||++||.. +.+||.|++++...++.||..++++|+.|+.+|+-
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~ 97 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN 97 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence 68999999999999999999999999999999999985 78999999999999999999999999999988863
No 41
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.77 E-value=2.8e-19 Score=153.28 Aligned_cols=74 Identities=32% Similarity=0.429 Sum_probs=70.7
Q ss_pred CCCCCccCCCCcccCCCceeccCc-ccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHHHHHHHhcCcc
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTG-QTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLIHQFCADNGIS 349 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cg-ht~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 349 (683)
.+|++|.||||+++|.|||+++|| |+|||.||++||.. +.+||.|++++...+++||..|+++|+.|+.++++.
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 689999999999999999999999 99999999999987 789999999999999999999999999999999874
No 42
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.75 E-value=5.4e-17 Score=168.38 Aligned_cols=184 Identities=19% Similarity=0.205 Sum_probs=165.6
Q ss_pred CHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHH-HHcCCCCHHHHHHHHHHHHHhccCc-hhHHHhhccCCChHHHH
Q 037121 432 DQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILK-VLKSGLSLEARQIAAATLFYLTSVK-GYRKLIGETPKAIPALV 509 (683)
Q Consensus 432 d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~-lL~~~~~~e~~~~Aa~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv 509 (683)
+.+.+..|+..|.+++.+.+|...+...|++++++. +|.++ +.++++.|+++|.+++.+. ..+..+.. .|++|.|+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~-~g~l~~Ll 130 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLG-LGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHH
Confidence 346788899999999998889999999999999999 99998 8999999999999999865 46667777 89999999
Q ss_pred HhhhcC-CHHHHHHHHHHHHHcccCCc-hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcC
Q 037121 510 KLIEEG-TDCGKKNAVVAIFGLLLSQG-NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTS 586 (683)
Q Consensus 510 ~lL~~~-~~~~~~~A~~aL~nLs~~~~-n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g 586 (683)
.+|.++ +..+++.|+|+|.||+.+.. ....+++.|+++.|+.+| .+++..++..|+++|.+|+. +++.+..+.+.|
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL-~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g 209 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-QQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 209 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 999964 78899999999999997654 567888999999999999 77899999999999999985 688999999999
Q ss_pred ChHHHHHhhccCCChHHHHHHHHHHHHHhcCCh
Q 037121 587 ALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAR 619 (683)
Q Consensus 587 ~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~ 619 (683)
+++.|+.+|.++ ++.+++.|+.+|.+|+....
T Consensus 210 ~i~~Lv~LL~~~-d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 210 MVQQLVALVRTE-HSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHHHHHHHTSC-CSTHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHcCC-ChhHHHHHHHHHHHHHhCCh
Confidence 999999999988 89999999999999998853
No 43
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.75 E-value=7.1e-19 Score=166.09 Aligned_cols=76 Identities=34% Similarity=0.531 Sum_probs=71.5
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHHHHHHHhcCccc
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLIHQFCADNGISL 350 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~~~ 350 (683)
++|++|.||||+++|.|||+++|||||||.||.+|+..++.+||.|+.++...+++||..|+++|+.|+..||+.+
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~~ 177 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWVE 177 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTCC
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCcC
Confidence 6799999999999999999999999999999999999855589999999999899999999999999999999863
No 44
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.73 E-value=2.4e-18 Score=141.81 Aligned_cols=74 Identities=65% Similarity=1.042 Sum_probs=70.9
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHHHHHHHhcCc
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLIHQFCADNGI 348 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 348 (683)
+++++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|++++...++.||..++++|+.|..++++
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 57899999999999999999999999999999999998789999999999988999999999999999999986
No 45
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.67 E-value=4.1e-17 Score=168.60 Aligned_cols=77 Identities=34% Similarity=0.521 Sum_probs=72.5
Q ss_pred CCCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHHHHHHHhcCccc
Q 037121 274 CLNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLIHQFCADNGISL 350 (683)
Q Consensus 274 ~~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~~~ 350 (683)
.++|++|.||||+++|.|||+++|||||||.||.+|+..++.+||.|+.++...+++||..++++|+.|+.++++.+
T Consensus 203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~~ 279 (281)
T 2c2l_A 203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVE 279 (281)
T ss_dssp CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCSS
T ss_pred CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCCC
Confidence 47899999999999999999999999999999999999877779999999998899999999999999999999853
No 46
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.2e-17 Score=138.52 Aligned_cols=73 Identities=23% Similarity=0.556 Sum_probs=65.3
Q ss_pred CCCCccCCCCcccCCCceecc-CcccccHHHHHHHHHhC-----CCCCCC--CCcc-cCCCCCCCcHHHHHHHHHHHHhc
Q 037121 276 NPEDFRCPISLELMTDPVTVS-TGQTYDRSSIQKWLKAG-----NMLCPK--TGEK-LTNTELLPNTTLKKLIHQFCADN 346 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~dPv~~~-cght~~r~cI~~w~~~~-----~~~CP~--c~~~-l~~~~l~pn~~l~~~i~~~~~~~ 346 (683)
.+++|.||||+++|.|||+++ |||+|||.||.+||..+ ..+||. |+.. +...+++||..|+++|+.|+..+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 477999999999999999996 99999999999999873 469999 6655 88889999999999999999887
Q ss_pred Cc
Q 037121 347 GI 348 (683)
Q Consensus 347 ~~ 348 (683)
+-
T Consensus 84 ~r 85 (94)
T 2yu4_A 84 HR 85 (94)
T ss_dssp CS
T ss_pred cc
Confidence 63
No 47
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.57 E-value=3.5e-15 Score=126.86 Aligned_cols=75 Identities=24% Similarity=0.490 Sum_probs=68.1
Q ss_pred CCCCCccCCCCcccCCCceecc-CcccccHHHHHHHHHh-CCCCCCCCCccc-CCCCCCCcHHHHHHHHHHHHhcCcc
Q 037121 275 LNPEDFRCPISLELMTDPVTVS-TGQTYDRSSIQKWLKA-GNMLCPKTGEKL-TNTELLPNTTLKKLIHQFCADNGIS 349 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~-cght~~r~cI~~w~~~-~~~~CP~c~~~l-~~~~l~pn~~l~~~i~~~~~~~~~~ 349 (683)
.+++++.||||+++|.+||+++ |||+||+.||.+|+.. +...||.|++.+ ....+.+|..++++|+.|...++..
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 86 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYT 86 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTCC
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhHH
Confidence 6789999999999999999999 9999999999999976 457999999997 5668999999999999999887753
No 48
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.53 E-value=1.3e-12 Score=145.00 Aligned_cols=278 Identities=15% Similarity=0.213 Sum_probs=219.5
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC--CCHHHHHHHHHHHHhhccCCc--
Q 037121 377 LMSRFLARRLFFGT-NEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS--PDQCVQENAVAALLKLSKHTS-- 451 (683)
Q Consensus 377 ~~i~~Lv~~L~s~~-~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~d~~~q~~A~~aL~nLs~~~~-- 451 (683)
.+|+.|+.+|.++. .+.|+.|+..|+.+++. ++..++ .++++.|+..|+. .|.++...++.+|.++-..++
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 48999999998764 78999999999999874 555555 5568999999976 689999999999988643321
Q ss_pred ----------------hhhHHh-hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch--hHHHhhccCCChHHHHHhh
Q 037121 452 ----------------GKKVIV-ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKG--YRKLIGETPKAIPALVKLI 512 (683)
Q Consensus 452 ----------------~r~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~lL 512 (683)
+.+.++ +.+.++.|+.+|+.. +...|.++...|..|+.... +...|...+++|+.|+.+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~-df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF-DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc-cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 122343 678899999999988 99999999999999987543 5777887689999999999
Q ss_pred hcCCHHHHHHHHHHHHHcccCCchhhhHhhc-CcHHHHHHHHccCC---ChhHHHHHHHHHHHhhC-ChhhHHHHHhcCC
Q 037121 513 EEGTDCGKKNAVVAIFGLLLSQGNHQKVLDA-GTVPLLADILASSN---RTELITDSLAVLANLAE-DIQGTSTILKTSA 587 (683)
Q Consensus 513 ~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~-g~v~~Lv~lL~~~~---~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~ 587 (683)
.+....++..|+..|.+|+.+..+..+++.. |+++.|+.++.... ...++..|+.+|.||.. ++.+...+.+.|+
T Consensus 176 ~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~ 255 (651)
T 3grl_A 176 ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSY 255 (651)
T ss_dssp GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCC
Confidence 9988899999999999999988887777666 99999999995332 34688999999999986 6778999999999
Q ss_pred hHHHHHhhccCCCh-----HHHH---HHHHHHHHHhcCCh-----HHHHHHHhcCCCcHHHHHHhHhcC--CHHHHHHHH
Q 037121 588 LPVIIGLLQTLTSR-----AGKE---YCVSILLSLCSNAR-----EEVTASLAKDPSLMNSLYSLTTDG--TSQARKKAR 652 (683)
Q Consensus 588 i~~Lv~lL~~~~s~-----~~ke---~A~~~L~~L~~~~~-----~~~~~~l~~~~g~i~~L~~Ll~~g--~~~~k~~A~ 652 (683)
++.|..++..+... ..-. .++.++..|+..++ ...+..+.+ .|++..|+.++... ...++..|.
T Consensus 256 i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~-~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 256 IQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ-CGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp GGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH-TTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred HHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-CCCHHHHHHHHccCCCCHHHHHHHH
Confidence 99999999765211 1222 36667777777632 244566666 89999999998765 566777777
Q ss_pred HHHHHHHH
Q 037121 653 SLIKILHK 660 (683)
Q Consensus 653 ~lL~~l~~ 660 (683)
.++..+.+
T Consensus 335 ~tla~~ir 342 (651)
T 3grl_A 335 NTVSEVIR 342 (651)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 77765544
No 49
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.46 E-value=3.3e-14 Score=127.97 Aligned_cols=69 Identities=20% Similarity=0.366 Sum_probs=63.2
Q ss_pred CCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCC-CCCCCcHHHHHHHHHHHH
Q 037121 276 NPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTN-TELLPNTTLKKLIHQFCA 344 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~-~~l~pn~~l~~~i~~~~~ 344 (683)
+++++.||||+++|.+||+++|||+||+.||.+|+..+...||.|+.++.. ..+.+|..++++++.|..
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence 466899999999999999999999999999999999767799999999977 689999999999988863
No 50
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.44 E-value=2.2e-14 Score=111.20 Aligned_cols=54 Identities=22% Similarity=0.355 Sum_probs=49.7
Q ss_pred CccCCCCcccCCCceec-cCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcH
Q 037121 279 DFRCPISLELMTDPVTV-STGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNT 333 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv~~-~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~ 333 (683)
.|.||||+++|.|||+. +|||+|||.||++|+.. +.+||+|++++...+++||+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECc
Confidence 68999999999999999 99999999999999987 56799999999999998875
No 51
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.41 E-value=9.9e-14 Score=128.66 Aligned_cols=68 Identities=26% Similarity=0.442 Sum_probs=63.3
Q ss_pred CCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCC-CCCCcHHHHHHHHHHH
Q 037121 276 NPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNT-ELLPNTTLKKLIHQFC 343 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~-~l~pn~~l~~~i~~~~ 343 (683)
+++++.||||+++|.+||+++|||+||+.||.+|+..+...||.|+..+... .+.+|..++++++.|.
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF 143 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 4668999999999999999999999999999999998677999999999877 8999999999999886
No 52
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.40 E-value=3.3e-13 Score=155.11 Aligned_cols=73 Identities=26% Similarity=0.378 Sum_probs=69.3
Q ss_pred CCCCCccCCCCcccCCCceeccCc-ccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHHHHHHHhcCc
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTG-QTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLIHQFCADNGI 348 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cg-ht~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 348 (683)
++|++|.|||++++|.|||++++| +||+|.+|++|+.. +.+||.|+++++..+++||..|+..|++||.+++-
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 789999999999999999999998 79999999999987 77999999999999999999999999999998764
No 53
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.35 E-value=3.9e-13 Score=115.76 Aligned_cols=72 Identities=21% Similarity=0.366 Sum_probs=65.0
Q ss_pred CCCCCccCCCCcccCCCceec-cCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHHHHHHHhcC
Q 037121 275 LNPEDFRCPISLELMTDPVTV-STGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLIHQFCADNG 347 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~-~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~ 347 (683)
.+++++.||||++.+.+|+++ +|||+||+.||.+|+.. ...||.|+..+...++.+|..++++++.|.....
T Consensus 18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFARN 90 (99)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHH
Confidence 346689999999999999988 89999999999999986 6899999999988889999999999999986643
No 54
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.34 E-value=4.8e-13 Score=115.33 Aligned_cols=73 Identities=23% Similarity=0.296 Sum_probs=64.8
Q ss_pred CCCCCccCCCCcccCCCcee-ccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHHHHHHHhcC
Q 037121 275 LNPEDFRCPISLELMTDPVT-VSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLIHQFCADNG 347 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~-~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~ 347 (683)
.+.+++.||||++.|.+||+ ++|||+||+.||.+|+..+...||.|+.++...++.+|..+.++++.......
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~~ 91 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQL 91 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHCC
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHHH
Confidence 35678999999999999999 99999999999999999855899999999988899999999888877765543
No 55
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1e-12 Score=108.61 Aligned_cols=61 Identities=18% Similarity=0.240 Sum_probs=53.2
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHH
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKK 337 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~ 337 (683)
+..+++.||||++.+.+|++++|||+||+.||.+|+.. ...||.|++++. ..+.+|..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~ 71 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMA 71 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHH
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHH
Confidence 45678999999999999999999999999999999987 789999999986 56778855543
No 56
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.31 E-value=8.4e-13 Score=115.62 Aligned_cols=68 Identities=15% Similarity=0.355 Sum_probs=61.0
Q ss_pred CCCCCccCCCCcccCCCceec-cCcccccHHHHHHHHHhCCCCCCCCCcccCCC----CCCCcHHHHHHHHHHH
Q 037121 275 LNPEDFRCPISLELMTDPVTV-STGQTYDRSSIQKWLKAGNMLCPKTGEKLTNT----ELLPNTTLKKLIHQFC 343 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~-~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~----~l~pn~~l~~~i~~~~ 343 (683)
.+++++.||||++.|.+||++ +|||+||+.||.+|+.. ...||.|+..+... .+.+|..+.++++.|.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 356789999999999999997 99999999999999987 58999999998765 6789999999998875
No 57
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.30 E-value=4.4e-13 Score=111.86 Aligned_cols=64 Identities=27% Similarity=0.511 Sum_probs=57.1
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHh-----CCCCCCCCCcccCCCCCCCcHHHHHH
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKA-----GNMLCPKTGEKLTNTELLPNTTLKKL 338 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~-----~~~~CP~c~~~l~~~~l~pn~~l~~~ 338 (683)
.+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|+..+...++.+|..++++
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 57889999999999999999999999999999999987 36799999999988888888766543
No 58
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.29 E-value=9.3e-14 Score=114.37 Aligned_cols=64 Identities=30% Similarity=0.513 Sum_probs=56.4
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhC------CCCCCCCCcccCCCCCCCcHHHHHH
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAG------NMLCPKTGEKLTNTELLPNTTLKKL 338 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~------~~~CP~c~~~l~~~~l~pn~~l~~~ 338 (683)
.+.+++.||||++.+.+|++++|||+||+.||.+|+... ...||.|++.+...++.+|..++++
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 567899999999999999999999999999999999863 6789999999988788888766543
No 59
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.29 E-value=1.4e-12 Score=116.07 Aligned_cols=69 Identities=23% Similarity=0.464 Sum_probs=63.1
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHHHHHH
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLIHQFC 343 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~ 343 (683)
.+++++.||||++.|.+||+++|||+||+.||.+|+..+...||.|+.++....+.+|..+++.|.++.
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccce
Confidence 678899999999999999999999999999999999986669999999998888899999988887754
No 60
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=5.3e-12 Score=101.82 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=51.6
Q ss_pred CCCCCccCCCCcccCCCceec-cCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCc
Q 037121 275 LNPEDFRCPISLELMTDPVTV-STGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPN 332 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~-~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn 332 (683)
++.+++.||||++.+.+|+++ +|||+||+.||.+|+.. ...||.|++.+...++.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 568899999999999999997 99999999999999987 7899999999887776655
No 61
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.27 E-value=7.6e-13 Score=117.30 Aligned_cols=69 Identities=20% Similarity=0.431 Sum_probs=61.6
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCC-------CCCCCcHHHHHHHHHHH
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTN-------TELLPNTTLKKLIHQFC 343 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~-------~~l~pn~~l~~~i~~~~ 343 (683)
...+++.||||++++.+||+++|||+||+.||.+|+..+...||.|++.+.. .++.+|..+.++|+.|.
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence 4566899999999999999999999999999999998878899999998763 56778999999998875
No 62
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.7e-12 Score=100.83 Aligned_cols=55 Identities=13% Similarity=0.346 Sum_probs=49.5
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCC
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTEL 329 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l 329 (683)
.+++++.||||++.+.+|++++|||+||+.||.+|+..+...||.|++++...++
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 5688999999999999999999999999999999997667899999998876543
No 63
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.27 E-value=4.4e-12 Score=102.87 Aligned_cols=58 Identities=24% Similarity=0.420 Sum_probs=49.0
Q ss_pred CCCCCccCCCCcccCCCceecc-CcccccHHHHHHHHHhC-CCCCCCCCcccC-CCCCCCc
Q 037121 275 LNPEDFRCPISLELMTDPVTVS-TGQTYDRSSIQKWLKAG-NMLCPKTGEKLT-NTELLPN 332 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~-cght~~r~cI~~w~~~~-~~~CP~c~~~l~-~~~l~pn 332 (683)
++++++.||||++.|.+||+++ |||+||+.||.+|+... ...||.|++++. ...+.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 6788999999999999999999 99999999999999873 479999999753 3334444
No 64
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.27 E-value=1.5e-12 Score=123.11 Aligned_cols=71 Identities=24% Similarity=0.478 Sum_probs=62.5
Q ss_pred CCCCCccCCCCcccCCCceec-cCcccccHHHHHHHHHhCCCCCCCCCcccC-CCCCCCcHHHHHHHHHHHHh
Q 037121 275 LNPEDFRCPISLELMTDPVTV-STGQTYDRSSIQKWLKAGNMLCPKTGEKLT-NTELLPNTTLKKLIHQFCAD 345 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~-~cght~~r~cI~~w~~~~~~~CP~c~~~l~-~~~l~pn~~l~~~i~~~~~~ 345 (683)
.+.+++.||||++.+.+||++ +|||+||+.||.+|+..+...||.|+.++. ...+.+|..++++|..|...
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 456789999999999999987 999999999999999987889999999984 45689999999999988643
No 65
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=7.1e-13 Score=110.60 Aligned_cols=64 Identities=25% Similarity=0.529 Sum_probs=57.1
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHh-----CCCCCCCCCcccCCCCCCCcHHHHHH
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKA-----GNMLCPKTGEKLTNTELLPNTTLKKL 338 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~-----~~~~CP~c~~~l~~~~l~pn~~l~~~ 338 (683)
.+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|+..+...++.+|..++++
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 57889999999999999999999999999999999986 46799999999988888888766543
No 66
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.26 E-value=3.4e-12 Score=116.85 Aligned_cols=64 Identities=19% Similarity=0.473 Sum_probs=53.4
Q ss_pred CCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHHHHHH
Q 037121 277 PEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLIHQFC 343 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~ 343 (683)
.+++.||||++.|.+||+++|||+||+.||.+|+.. +.+||.|++++... .+|..+...|..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 347899999999999999999999999999999986 78899999988653 34566666666655
No 67
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.26 E-value=5.9e-10 Score=123.91 Aligned_cols=277 Identities=15% Similarity=0.128 Sum_probs=209.6
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcCch-----------------hh-HHHHhcCChHHHHhhcCCCCHHHHH
Q 037121 378 MSRFLARRLFFG--TNEEKNKAAYEIRLLAKSNIF-----------------NR-SCIVESGAIPPLLNLLSSPDQCVQE 437 (683)
Q Consensus 378 ~i~~Lv~~L~s~--~~~~~~~a~~~L~~La~~~~~-----------------~r-~~i~~~G~i~~Lv~lL~s~d~~~q~ 437 (683)
.++.|+..|+.. +.+....++..|.++...++. +. ..+.+.+.|+.|+.+|.+.|-.++.
T Consensus 61 ~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~ 140 (651)
T 3grl_A 61 AMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRW 140 (651)
T ss_dssp THHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHH
T ss_pred hHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHH
Confidence 567888888665 677778888888776543321 11 2334568899999999999999999
Q ss_pred HHHHHHHhhccCCch--hhHHh-hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhc
Q 037121 438 NAVAALLKLSKHTSG--KKVIV-ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEE 514 (683)
Q Consensus 438 ~A~~aL~nLs~~~~~--r~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~ 514 (683)
.++.+|..|+.+... ++.|. ..++++.|+.+|++. ...+|-.|+.+|.+|+.......+++.-.|+++.|++++..
T Consensus 141 ~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~ 219 (651)
T 3grl_A 141 PGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITE 219 (651)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHh
Confidence 999999999876654 77788 569999999999988 78899999999999999888888887757999999999987
Q ss_pred CCH----HHHHHHHHHHHHcccCCc-hhhhHhhcCcHHHHHHHHccCCCh-----hHHHH---HHHHHHHhhCC------
Q 037121 515 GTD----CGKKNAVVAIFGLLLSQG-NHQKVLDAGTVPLLADILASSNRT-----ELITD---SLAVLANLAED------ 575 (683)
Q Consensus 515 ~~~----~~~~~A~~aL~nLs~~~~-n~~~iv~~g~v~~Lv~lL~~~~~~-----~~~~~---al~iL~nLa~~------ 575 (683)
+.. .+..+++..|.||..+.. |...+.+.|+++.|..+|....+. ..... ++.++..|+..
T Consensus 220 Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~ 299 (651)
T 3grl_A 220 EGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA 299 (651)
T ss_dssp HTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHH
T ss_pred cCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 443 678899999999998754 889999999999999999432211 12233 77778877642
Q ss_pred -hhhHHHHHhcCChHHHHHhhccC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcC--------CCcHHHHHHhHhcC-C
Q 037121 576 -IQGTSTILKTSALPVIIGLLQTL-TSRAGKEYCVSILLSLCSNAREEVTASLAKD--------PSLMNSLYSLTTDG-T 644 (683)
Q Consensus 576 -~~~~~~i~~~g~i~~Lv~lL~~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~--------~g~i~~L~~Ll~~g-~ 644 (683)
..+..++.+.|++..|++++... .+..++..|+.++..+.+++. ..+..+... +-++..|+.++.+. .
T Consensus 300 t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~-~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~ 378 (651)
T 3grl_A 300 TSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQ-VNQDYFASVNAPSNPPRPAIVVLLMSMVNERQP 378 (651)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH-HHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSC
T ss_pred CHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH-HHHHHHhhccCCCCCCcChHHHHHHHHhccccc
Confidence 24577889999999999977653 356789999999999998874 444544431 11344444445443 5
Q ss_pred HHHHHHHHHHHH
Q 037121 645 SQARKKARSLIK 656 (683)
Q Consensus 645 ~~~k~~A~~lL~ 656 (683)
...|-.|+..++
T Consensus 379 ~~lR~Aa~~cl~ 390 (651)
T 3grl_A 379 FVLRCAVLYCFQ 390 (651)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 667777777766
No 68
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=9.8e-13 Score=116.92 Aligned_cols=70 Identities=14% Similarity=0.224 Sum_probs=63.4
Q ss_pred CCCCCccCCCCcccCCCceec-cCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHHHHHHHhcC
Q 037121 275 LNPEDFRCPISLELMTDPVTV-STGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLIHQFCADNG 347 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~-~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~~~~ 347 (683)
.+.+++.||||+++|.+||++ +|||+||+.||.+|+. ..||.|+..+...++.+|..+.+++..+.....
T Consensus 18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~~ 88 (117)
T 1jm7_B 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLRN 88 (117)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHHH
T ss_pred hchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHHH
Confidence 346789999999999999999 9999999999999987 789999999988889999999999998876554
No 69
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.22 E-value=4.1e-12 Score=111.97 Aligned_cols=68 Identities=24% Similarity=0.483 Sum_probs=58.9
Q ss_pred CCCccCCCCcccCCCceeccCcccccHHHHHHHHHhC--CCCCCCCCcccCCCCCCCcHHHHHHHHHHHH
Q 037121 277 PEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAG--NMLCPKTGEKLTNTELLPNTTLKKLIHQFCA 344 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~--~~~CP~c~~~l~~~~l~pn~~l~~~i~~~~~ 344 (683)
.+++.||||++.+.+|++++|||+||+.||.+|+..+ ...||.|+..+....+.+|..+.++++.+..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999863 3689999999998888888777777766653
No 70
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.20 E-value=6.3e-10 Score=108.98 Aligned_cols=190 Identities=18% Similarity=0.182 Sum_probs=158.2
Q ss_pred cCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHH
Q 037121 418 SGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKL 497 (683)
Q Consensus 418 ~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 497 (683)
.+.++.|+.+|.+++..++..|+.+|..+.. .++++.|+..|.++ +..+|..|+.+|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDE-DAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-CHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCC-CHHHHHHHHHHHHhhCC-------
Confidence 5678999999999999999999999998753 46899999999988 89999999999988742
Q ss_pred hhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChh
Q 037121 498 IGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQ 577 (683)
Q Consensus 498 i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~ 577 (683)
.++++.|+.+|.++++.++..|+.+|.++.. .++++.|+.+| .++++.++..|+.+|+.+..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC---
Confidence 4689999999999999999999999998853 35789999999 88899999999999998853
Q ss_pred hHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHH
Q 037121 578 GTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKI 657 (683)
Q Consensus 578 ~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~ 657 (683)
...++.|..++.+. ++.++..|+.+|..+.. ..+++.|..++.++++.+|..|...|..
T Consensus 142 -------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG-------------ERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS-------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-------------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 24688899999877 89999999999988853 1236778889999999999999999998
Q ss_pred HHHhhhh
Q 037121 658 LHKFIET 664 (683)
Q Consensus 658 l~~~~~~ 664 (683)
+......
T Consensus 201 ~~~~~~~ 207 (211)
T 3ltm_A 201 HKSFNHH 207 (211)
T ss_dssp -------
T ss_pred cCCCCCC
Confidence 8765543
No 71
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.19 E-value=6.5e-10 Score=108.90 Aligned_cols=186 Identities=19% Similarity=0.170 Sum_probs=156.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIV 457 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~ 457 (683)
.++.|+..|.++++.++..|+..|..+.. .++++.|+.+|.+++..++..|+.+|+++..
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------- 79 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------- 79 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence 67889999999999999999988776532 3678999999999999999999999998852
Q ss_pred hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchh
Q 037121 458 ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNH 537 (683)
Q Consensus 458 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~ 537 (683)
.++++.|+..|.++ +..+|..|+.+|..+.. .++++.|+.++.++++.++..|+.+|.++..
T Consensus 80 -~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 141 (211)
T 3ltm_A 80 -ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 141 (211)
T ss_dssp -GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred -HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence 46789999999988 89999999999998743 4689999999999999999999999999842
Q ss_pred hhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcC
Q 037121 538 QKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSN 617 (683)
Q Consensus 538 ~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~ 617 (683)
..+++.|+.+| .++++.++..|+.+|..+.. ..+++.|..++.++ ++.++..|..+|.++...
T Consensus 142 -----~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 142 -----ERAVEPLIKAL-KDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG-TGFARKVAVNYLETHKSF 204 (211)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC----
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCC
Confidence 35789999999 78889999999999998853 23467888888887 899999999999888776
Q ss_pred C
Q 037121 618 A 618 (683)
Q Consensus 618 ~ 618 (683)
.
T Consensus 205 ~ 205 (211)
T 3ltm_A 205 N 205 (211)
T ss_dssp -
T ss_pred C
Confidence 4
No 72
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.19 E-value=7.7e-10 Score=113.42 Aligned_cols=227 Identities=13% Similarity=0.037 Sum_probs=168.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhH
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKV 455 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~ 455 (683)
...++.|+..|.++++.++..|++.|..+.. .++++.|+.+|.+++..++..|+.+|.++...+..-.
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~- 89 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED- 89 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH-
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch-
Confidence 3467899999999999999999988887752 3468999999999999999999999999875432211
Q ss_pred HhhcCcHHHHHH-HHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCC
Q 037121 456 IVESGGLKVILK-VLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ 534 (683)
Q Consensus 456 i~~~g~i~~Lv~-lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 534 (683)
..++.+.. ++.++ +..+|..|+++|.++...... .. ..+++.|+.++.++++.++..|+.+|.++..
T Consensus 90 ----~l~~~L~~~~~~d~-~~~vr~~a~~aL~~l~~~~~~----~~-~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-- 157 (280)
T 1oyz_A 90 ----NVFNILNNMALNDK-SACVRATAIESTAQRCKKNPI----YS-PKIVEQSQITAFDKSTNVRRATAFAISVIND-- 157 (280)
T ss_dssp ----HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCGG----GH-HHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred ----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCc----cc-HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--
Confidence 12333432 34455 889999999999998642210 01 3468899999999999999999999998754
Q ss_pred chhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHH
Q 037121 535 GNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSL 614 (683)
Q Consensus 535 ~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L 614 (683)
.++++.|+.+| .++++.++..|+..|..+.... ...++.|+.++.+. ++.++..|+.+|..+
T Consensus 158 --------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~-~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 158 --------KATIPLLINLL-KDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDK-NEEVRIEAIIGLSYR 219 (280)
T ss_dssp ---------CCHHHHHHHH-TCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCS-CHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHH-cCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCC-CHHHHHHHHHHHHHh
Confidence 35899999999 7788899999999999885321 12467888888877 888999999998887
Q ss_pred hcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHH
Q 037121 615 CSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILH 659 (683)
Q Consensus 615 ~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~ 659 (683)
.. ..+++.|+.++.+++ ++..|.+.|..+.
T Consensus 220 ~~-------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 220 KD-------------KRVLSVLCDELKKNT--VYDDIIEAAGELG 249 (280)
T ss_dssp TC-------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHC
T ss_pred CC-------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcC
Confidence 62 234666777776644 5666666665543
No 73
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.5e-11 Score=99.39 Aligned_cols=55 Identities=24% Similarity=0.514 Sum_probs=48.9
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHh--CCCCCCCCCcccCCCCC
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKA--GNMLCPKTGEKLTNTEL 329 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~--~~~~CP~c~~~l~~~~l 329 (683)
.+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|++.+...++
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 57889999999999999999999999999999999973 56799999998876543
No 74
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=1.2e-11 Score=97.60 Aligned_cols=55 Identities=22% Similarity=0.398 Sum_probs=49.1
Q ss_pred CCccCCCCcc-cCCCc----eeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCc
Q 037121 278 EDFRCPISLE-LMTDP----VTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPN 332 (683)
Q Consensus 278 ~~f~CpIc~~-~m~dP----v~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn 332 (683)
+++.||||++ .+.+| ++++|||+||+.||.+|+..+...||.|++++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 5789999999 99999 5689999999999999998877899999999988777665
No 75
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.8e-11 Score=94.73 Aligned_cols=46 Identities=28% Similarity=0.581 Sum_probs=42.5
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHh--CCCCCCCC
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKA--GNMLCPKT 320 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~--~~~~CP~c 320 (683)
.+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 57889999999999999999999999999999999985 46789987
No 76
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.16 E-value=1.4e-09 Score=105.70 Aligned_cols=184 Identities=18% Similarity=0.169 Sum_probs=156.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHH
Q 037121 377 LMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVI 456 (683)
Q Consensus 377 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i 456 (683)
...+.+++.|.++++.++..|+..|..+.. .++++.|+.+|.+++..++..|+.+|+.+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 367889999999999999999988876542 3678999999999999999999999988752
Q ss_pred hhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCch
Q 037121 457 VESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGN 536 (683)
Q Consensus 457 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 536 (683)
.++++.|+..|.+. +..+|..|+.+|..+.. ..+++.|+.++.++++.++..|+.+|.++..
T Consensus 75 --~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 --ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp --GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred --HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 36789999999988 89999999999988742 4589999999999999999999999998842
Q ss_pred hhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHh
Q 037121 537 HQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLC 615 (683)
Q Consensus 537 ~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~ 615 (683)
.++++.|+.++ .++++.++..|+.+|..+.. ..+++.|..++.+. ++.++..|..+|..+-
T Consensus 137 ------~~~~~~L~~~l-~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 ------ERAVEPLIKAL-KDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG-TGFARKVAVNYLETHK 197 (201)
T ss_dssp ------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 46889999999 77889999999999998842 13567888888887 8999999999987764
No 77
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.14 E-value=2e-11 Score=98.03 Aligned_cols=58 Identities=19% Similarity=0.399 Sum_probs=51.6
Q ss_pred CCCCCccCCCCcccCCCc-------eeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcH
Q 037121 275 LNPEDFRCPISLELMTDP-------VTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNT 333 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dP-------v~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~ 333 (683)
...+++.||||++.+.+| ++++|||+||+.||.+|+.. ..+||.|++.+...++.+++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeecc
Confidence 456789999999999998 88999999999999999987 67999999999888777653
No 78
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.14 E-value=5.3e-12 Score=115.67 Aligned_cols=68 Identities=12% Similarity=0.305 Sum_probs=57.2
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccC---------CCCCCCcHHHHHHHHHH
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLT---------NTELLPNTTLKKLIHQF 342 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~---------~~~l~pn~~l~~~i~~~ 342 (683)
.++++|.||||+++|.+||+++|||+||+.||.+|+..+...||.|+.++. ...+.++..++..|.+.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L 103 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL 103 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccc
Confidence 578899999999999999999999999999999999887779999998643 22455787777777543
No 79
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.14 E-value=2e-11 Score=115.99 Aligned_cols=68 Identities=24% Similarity=0.475 Sum_probs=62.3
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcHHHHHHHHHH
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNTTLKKLIHQF 342 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~ 342 (683)
.++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.+|..+.+.|.++
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 67889999999999999999999999999999999988667999999999888888999888888764
No 80
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.13 E-value=2.7e-11 Score=107.36 Aligned_cols=68 Identities=22% Similarity=0.372 Sum_probs=57.1
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCC-CcHHHHHHHHHH
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELL-PNTTLKKLIHQF 342 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~-pn~~l~~~i~~~ 342 (683)
++++++.||||++.+.+||+++|||+||+.||.+|+..+...||.|+.++...++. ++..+.+++.++
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 34668999999999999999999999999999999998778999999998776654 455666666544
No 81
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.13 E-value=2.1e-09 Score=104.40 Aligned_cols=186 Identities=19% Similarity=0.187 Sum_probs=157.1
Q ss_pred cCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHH
Q 037121 418 SGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKL 497 (683)
Q Consensus 418 ~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 497 (683)
.+..+.++.+|.++|..++..|+.+|..+.. .++++.|+..|.++ +..+|..|+.+|..+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~-~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDE-DAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCC-CHHHHHHHHHHHHhhCC-------
Confidence 3567899999999999999999999998763 46789999999888 89999999999987742
Q ss_pred hhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChh
Q 037121 498 IGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQ 577 (683)
Q Consensus 498 i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~ 577 (683)
.++++.|+.+|.++++.++..|+++|.++.. ..+++.|+.+| .++++.++..|+.+|+.+..
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC---
Confidence 4689999999999999999999999998743 35789999999 78889999999999998853
Q ss_pred hHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHH
Q 037121 578 GTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKI 657 (683)
Q Consensus 578 ~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~ 657 (683)
.+.++.|..++.+. ++.++..|+.+|..+.. .. +++.|..++.++++.+|..|...|..
T Consensus 137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~---~~----------~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG---ER----------VRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS---HH----------HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc---hh----------HHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 35688899999887 88999999999988842 22 36778888899999999999998886
Q ss_pred HHH
Q 037121 658 LHK 660 (683)
Q Consensus 658 l~~ 660 (683)
+..
T Consensus 196 l~~ 198 (201)
T 3ltj_A 196 HKS 198 (201)
T ss_dssp CC-
T ss_pred HHh
Confidence 543
No 82
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.2e-10 Score=89.40 Aligned_cols=46 Identities=22% Similarity=0.625 Sum_probs=42.0
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHh--CCCCCCCC
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKA--GNMLCPKT 320 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~--~~~~CP~c 320 (683)
.+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 56789999999999999999999999999999999875 57889987
No 83
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=2.2e-10 Score=96.05 Aligned_cols=53 Identities=28% Similarity=0.468 Sum_probs=47.6
Q ss_pred CCCCCccCCCCcccCCC----ceeccCcccccHHHHHHHHHhC--CCCCCCCCcccCCC
Q 037121 275 LNPEDFRCPISLELMTD----PVTVSTGQTYDRSSIQKWLKAG--NMLCPKTGEKLTNT 327 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~d----Pv~~~cght~~r~cI~~w~~~~--~~~CP~c~~~l~~~ 327 (683)
.+.+++.||||++.+.+ |++++|||+||+.||.+|+..+ ...||.|++.+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 56789999999999999 9999999999999999999974 47999999987654
No 84
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=7.5e-11 Score=94.70 Aligned_cols=51 Identities=12% Similarity=0.178 Sum_probs=45.8
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
...+++.||||++.+.+|++++|||+||+.||.+|+.. ...||.|++.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 34668999999999999999999999999999999987 5899999988754
No 85
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.5e-10 Score=92.26 Aligned_cols=51 Identities=20% Similarity=0.443 Sum_probs=46.3
Q ss_pred CCCCCccCCCCcccCCCc-------eeccCcccccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 275 LNPEDFRCPISLELMTDP-------VTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dP-------v~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
.+.+++.||||++.+.+| ++++|||+||+.||.+|+.. +.+||.|++.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 567899999999999998 88999999999999999998 7899999988754
No 86
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.02 E-value=7e-11 Score=92.66 Aligned_cols=54 Identities=20% Similarity=0.443 Sum_probs=48.1
Q ss_pred CCccCCCCcccCCCc-------eeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCc
Q 037121 278 EDFRCPISLELMTDP-------VTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPN 332 (683)
Q Consensus 278 ~~f~CpIc~~~m~dP-------v~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn 332 (683)
+++.||||++.+.+| +.++|||+||+.||.+|+.. +.+||.|++++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 478999999999988 78899999999999999998 7899999999887766554
No 87
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.99 E-value=3.1e-08 Score=101.38 Aligned_cols=201 Identities=10% Similarity=0.098 Sum_probs=156.7
Q ss_pred HHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchh
Q 037121 415 IVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGY 494 (683)
Q Consensus 415 i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~ 494 (683)
....+.++.|+.+|.+++..++..|+.+|.++. ..++++.|+.+|.++ +..+|..|+++|..+......
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~-~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDK-NYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCS-SHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCC-CHHHHHHHHHHHHHhcccccc
Confidence 345678999999999999999999999999986 245789999999988 889999999999888643221
Q ss_pred HHHhhccCCChHHHHH-hhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhh
Q 037121 495 RKLIGETPKAIPALVK-LIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA 573 (683)
Q Consensus 495 ~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa 573 (683)
. ...++.|.+ ++.++++.++..|+++|.++...... ....+++.|+.+| .++++.++..|+..|+++.
T Consensus 88 ~------~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 88 E------DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITA-FDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp H------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC-
T ss_pred c------hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHh-hCCCHHHHHHHHHHHHhcC
Confidence 1 112334442 34667889999999999999743221 1224688899999 7889999999999998775
Q ss_pred CChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHH
Q 037121 574 EDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARS 653 (683)
Q Consensus 574 ~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~ 653 (683)
. .+.++.|+.++.+. ++.++..|+.+|..+.... . .+++.|+.++.++++.+|..|.+
T Consensus 157 ~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~~-~----------~~~~~L~~~l~d~~~~vR~~A~~ 214 (280)
T 1oyz_A 157 D----------KATIPLLINLLKDP-NGDVRNWAAFAININKYDN-S----------DIRDCFVEMLQDKNEEVRIEAII 214 (280)
T ss_dssp ------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCC-H----------HHHHHHHHHTTCSCHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhccCc-H----------HHHHHHHHHhcCCCHHHHHHHHH
Confidence 4 25799999999887 8899999999998886433 1 23678888999999999999999
Q ss_pred HHHHHH
Q 037121 654 LIKILH 659 (683)
Q Consensus 654 lL~~l~ 659 (683)
.|..+.
T Consensus 215 aL~~~~ 220 (280)
T 1oyz_A 215 GLSYRK 220 (280)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 887764
No 88
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.98 E-value=4.8e-09 Score=124.77 Aligned_cols=275 Identities=15% Similarity=0.117 Sum_probs=195.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHH--H--HhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSC--I--VESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGK 453 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~--i--~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r 453 (683)
.++.|++.+.++++..+..|+..|..+++..+..... + .-.+.+|.|++++.+++..++..|+.+|.++.......
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~ 208 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA 208 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH
Confidence 6788999999999999999999999998754432110 0 01346788889999999999999999999887553321
Q ss_pred hHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccC
Q 037121 454 KVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLS 533 (683)
Q Consensus 454 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 533 (683)
..-.-.+.++.++..+.++ +.++|..|+.+|..++........-.- .+.++.++.++.+.++.++..|+..+.+++..
T Consensus 209 ~~~~~~~~l~~l~~~~~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~ 286 (852)
T 4fdd_A 209 LMLHIDSFIENLFALAGDE-EPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQ 286 (852)
T ss_dssp HHTSHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence 1111235678888888887 899999999999999864332111111 24778888888888899999999999999876
Q ss_pred CchhhhHhhc---CcHHHHHHHHc----------cC-----------CChhHHHHHHHHHHHhhCChhhHHHHHhcCChH
Q 037121 534 QGNHQKVLDA---GTVPLLADILA----------SS-----------NRTELITDSLAVLANLAEDIQGTSTILKTSALP 589 (683)
Q Consensus 534 ~~n~~~iv~~---g~v~~Lv~lL~----------~~-----------~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~ 589 (683)
...+. .+.. ..++.++..+. .+ .+-.++..|..+|..|+.... ..+.. ..++
T Consensus 287 ~~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~~-~l~~ 362 (852)
T 4fdd_A 287 PICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELLP-HILP 362 (852)
T ss_dssp TTHHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGHH-HHHH
T ss_pred hhHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHHH-HHHH
Confidence 53322 2221 34566666651 12 112357778888888875321 11111 2466
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhh
Q 037121 590 VIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFI 662 (683)
Q Consensus 590 ~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 662 (683)
.+.+++.+. +...|+.|+.+|.+++.+.++.... .. .++++.|+.++.+.++.+|..|++.+..+..+.
T Consensus 363 ~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~-~l--~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 431 (852)
T 4fdd_A 363 LLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIP-YL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 431 (852)
T ss_dssp HHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGG-GH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHH-HH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 777778776 8999999999999999887543332 22 457999999999999999999999999887754
No 89
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.98 E-value=3.2e-10 Score=92.37 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=46.6
Q ss_pred CCCCCccCCCCcccC--CCceecc--CcccccHHHHHHHHHhCCCCCCCCCcccCCCCC
Q 037121 275 LNPEDFRCPISLELM--TDPVTVS--TGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTEL 329 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m--~dPv~~~--cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l 329 (683)
++.+++.||||++.+ .|+++.+ |||+||+.|+.+|+..+...||.|++++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 457899999999988 4666665 999999999999998778899999998876543
No 90
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.96 E-value=4.7e-10 Score=91.77 Aligned_cols=57 Identities=21% Similarity=0.368 Sum_probs=48.4
Q ss_pred CCCCCccCCCCcccCCCc---eeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCc
Q 037121 275 LNPEDFRCPISLELMTDP---VTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPN 332 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dP---v~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn 332 (683)
...+++.||||++.|.+| ++++|||+||+.||.+|+.. +.+||.|++.+....+.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 456789999999999877 34699999999999999986 6899999999887766554
No 91
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.88 E-value=9.9e-09 Score=122.07 Aligned_cols=275 Identities=16% Similarity=0.121 Sum_probs=191.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHh--cCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhh
Q 037121 377 LMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVE--SGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKK 454 (683)
Q Consensus 377 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~ 454 (683)
..++.+++.+.+.++++|..|++.|..+....+.. +.. .++++.|+.++.+++.+++..|+.+|.+++......-
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~---~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~ 250 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA---LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 250 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH---HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH---HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 36777888888889999999999998777543321 111 2577889999999999999999999999986543311
Q ss_pred HHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhc-cCCChHHHHHhhh-----------c--------
Q 037121 455 VIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGE-TPKAIPALVKLIE-----------E-------- 514 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~-----------~-------- 514 (683)
.-.-.+.++.++.++.+. +.+++..|+.++..++.....+..+.. ....+|.|+..+. +
T Consensus 251 ~~~l~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d 329 (852)
T 4fdd_A 251 LPHMHNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD 329 (852)
T ss_dssp GGGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence 111134788888888877 889999999999999876543332211 0135566666652 2
Q ss_pred ---CCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHH
Q 037121 515 ---GTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVI 591 (683)
Q Consensus 515 ---~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~L 591 (683)
.+..+++.|+.+|..|+...+. .++. .+++.+.+++ .+++..++..|+.+|++++........-.-.+.++.+
T Consensus 330 d~~~~~~vr~~a~~~L~~la~~~~~--~~~~-~l~~~l~~~l-~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l 405 (852)
T 4fdd_A 330 DTISDWNLRKCSAAALDVLANVYRD--ELLP-HILPLLKELL-FHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHL 405 (852)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHH-TCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHhccH--HHHH-HHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 1123577888888888764432 2222 4677777778 6778999999999999998743321111112457888
Q ss_pred HHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhh
Q 037121 592 IGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFI 662 (683)
Q Consensus 592 v~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 662 (683)
+..+.+. ++.++..|+.+|.+++...+........ .++++.|+..+.++++.+|..|++.+..+.+..
T Consensus 406 ~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 406 IQCLSDK-KALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp HHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCC-CHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 8888877 8999999999999998742211111111 246888899998899999999999998877543
No 92
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.86 E-value=2.6e-08 Score=108.86 Aligned_cols=277 Identities=13% Similarity=0.050 Sum_probs=188.1
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcC-chhhHHHHhcCChHHHHhhcCCC--CHHHHHHHHHHHHhhccCCc-
Q 037121 378 MSRFLARRLFFG--TNEEKNKAAYEIRLLAKSN-IFNRSCIVESGAIPPLLNLLSSP--DQCVQENAVAALLKLSKHTS- 451 (683)
Q Consensus 378 ~i~~Lv~~L~s~--~~~~~~~a~~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~--d~~~q~~A~~aL~nLs~~~~- 451 (683)
.++.|+..+.++ ++..+..|+..|..+++.. +..-.... ..+++.++.+|.+. +..++..|+.++.++...-.
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 678888999888 8999999999999999753 21111111 24678889999887 79999999999998753311
Q ss_pred h-hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccC-CChHHHHHhhhcCCHHHHHHHHHHHHH
Q 037121 452 G-KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETP-KAIPALVKLIEEGTDCGKKNAVVAIFG 529 (683)
Q Consensus 452 ~-r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~-g~i~~Lv~lL~~~~~~~~~~A~~aL~n 529 (683)
+ .......-.++.+...+.++ +.+++..++.+|..++......-.-.- . +.++.++..+.+.++.++..|+..+.+
T Consensus 208 ~~~~~~~~~~l~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 208 NFDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSN 285 (462)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 1 11111111355555556555 889999999999998764321100011 3 677888888888889999999999988
Q ss_pred cccCCc------------------hhhhHhh---cCcHHHHHHHHccC------CChhHHHHHHHHHHHhhCChhhHHHH
Q 037121 530 LLLSQG------------------NHQKVLD---AGTVPLLADILASS------NRTELITDSLAVLANLAEDIQGTSTI 582 (683)
Q Consensus 530 Ls~~~~------------------n~~~iv~---~g~v~~Lv~lL~~~------~~~~~~~~al~iL~nLa~~~~~~~~i 582 (683)
++.... ....+++ ..++|.+++.|... .+..++..|..+|..|+..-. ..+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~ 363 (462)
T 1ibr_B 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDI 363 (462)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTH
T ss_pred HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHH
Confidence 876420 1111211 23566777777321 234678889999998875211 122
Q ss_pred HhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhh
Q 037121 583 LKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFI 662 (683)
Q Consensus 583 ~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 662 (683)
.. ..++.+...+.+. +...|+.|+.+|..++.+...+...... ..++|.|+.++.+.++.+|..|+++|..+....
T Consensus 364 ~~-~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 364 VP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 21 3456777788776 8889999999999999764322111111 568999999999999999999999999888765
Q ss_pred h
Q 037121 663 E 663 (683)
Q Consensus 663 ~ 663 (683)
.
T Consensus 440 ~ 440 (462)
T 1ibr_B 440 P 440 (462)
T ss_dssp G
T ss_pred c
Confidence 4
No 93
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.85 E-value=1.7e-09 Score=85.88 Aligned_cols=48 Identities=23% Similarity=0.458 Sum_probs=42.7
Q ss_pred CCccCCCCcccCCCc-eeccCcccccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 278 EDFRCPISLELMTDP-VTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 278 ~~f~CpIc~~~m~dP-v~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
++..||||++.+.+| +.++|||+||..||.+|+.. +.+||.|++++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 467899999999997 67899999999999999987 6899999988753
No 94
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=3.6e-09 Score=85.48 Aligned_cols=51 Identities=18% Similarity=0.348 Sum_probs=44.8
Q ss_pred CCCCCccCCCCcccCCCceec---cCcccccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 275 LNPEDFRCPISLELMTDPVTV---STGQTYDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~---~cght~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
+..++..|+||++.+.+|..+ +|||.||+.||.+|+.. +.+||.|++.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 567789999999999887654 99999999999999998 5699999998754
No 95
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.82 E-value=2.3e-09 Score=81.18 Aligned_cols=47 Identities=23% Similarity=0.422 Sum_probs=41.7
Q ss_pred CCccCCCCcccCCC----ceeccCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 278 EDFRCPISLELMTD----PVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 278 ~~f~CpIc~~~m~d----Pv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
+++.||||++.+.+ +++++|||.||..||.+|+.. ..+||.|++.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 46789999999976 778899999999999999998 489999998764
No 96
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.82 E-value=6.2e-09 Score=82.81 Aligned_cols=50 Identities=18% Similarity=0.474 Sum_probs=42.9
Q ss_pred CCCCccCCCCcccCC---CceeccCcccccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 276 NPEDFRCPISLELMT---DPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~---dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
..++..||||++.+. +++.++|||+||+.||.+|+.. +.+||.|+..+..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 456789999999884 4567899999999999999998 6689999988765
No 97
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.82 E-value=1.9e-07 Score=105.28 Aligned_cols=228 Identities=16% Similarity=0.158 Sum_probs=161.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhH
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKV 455 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~ 455 (683)
...++.+...+.+.+++++..|+..|..++...... ......+|.|..++.+++..++..|+.+|..++..-...
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-- 237 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE-- 237 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--
Confidence 345677777778889999999999999998754321 223578899999999999999999999999987543221
Q ss_pred HhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCc
Q 037121 456 IVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQG 535 (683)
Q Consensus 456 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 535 (683)
......++.+..++.+. +..+|..|+.+|..++..-.... .. ...++.++.++.++++.++..|+.+|..++..-+
T Consensus 238 ~~~~~~~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~~--~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 238 DLEALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGPEI--TK-TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp HHHHHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCHHH--HH-HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHhCccc--ch-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC
Confidence 12344677788888777 88999999999999875322211 12 4578999999999999999999999999886543
Q ss_pred hh--hhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHH
Q 037121 536 NH--QKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLS 613 (683)
Q Consensus 536 n~--~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~ 613 (683)
.. ....-..++|.+..++ .+++..++..++.+|..++..-. .... ....++.+..+++.. ++.++..|+.+|..
T Consensus 314 ~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~-~~~~-~~~l~p~l~~~l~d~-~~~Vr~~a~~~l~~ 389 (588)
T 1b3u_A 314 ADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPILG-KDNT-IEHLLPLFLAQLKDE-CPEVRLNIISNLDC 389 (588)
T ss_dssp TTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHHC-HHHH-HHHTHHHHHHHHTCS-CHHHHHHHHTTCHH
T ss_pred hhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhh-HhHH-HHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 21 1123345778888888 67778888888888887764211 1111 123456666777665 66777777766666
Q ss_pred Hhc
Q 037121 614 LCS 616 (683)
Q Consensus 614 L~~ 616 (683)
++.
T Consensus 390 l~~ 392 (588)
T 1b3u_A 390 VNE 392 (588)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 98
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.79 E-value=4.2e-08 Score=113.54 Aligned_cols=192 Identities=17% Similarity=0.203 Sum_probs=149.0
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHH-HHcCCCCHHHHHHHHHHHHHhccC--chhHH
Q 037121 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILK-VLKSGLSLEARQIAAATLFYLTSV--KGYRK 496 (683)
Q Consensus 420 ~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~-lL~~~~~~e~~~~Aa~~L~~Ls~~--~~~~~ 496 (683)
.|.++++.|+++|++.|..|+.+|.||+.++..+..+...|++..++. +|... +.++|+.|+++|.||+.. .+.+.
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcCchHHH
Confidence 456678889999999999999999999998888888999999988766 56656 899999999999999864 45667
Q ss_pred HhhccCCChHHHHHhhhcCC---------------------HHHHHHHHHHHHHcccCCc-hhhhHhhcCcHHHHHHHHc
Q 037121 497 LIGETPKAIPALVKLIEEGT---------------------DCGKKNAVVAIFGLLLSQG-NHQKVLDAGTVPLLADILA 554 (683)
Q Consensus 497 ~i~~~~g~i~~Lv~lL~~~~---------------------~~~~~~A~~aL~nLs~~~~-n~~~iv~~g~v~~Lv~lL~ 554 (683)
.+.. .|++++|..++.... ......++.+|++||...+ ....+...|.++.|+.+|.
T Consensus 114 ~l~~-~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 114 HLYR-LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHH-TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH-cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 7788 899999999886411 1234567889999997655 4567888899999999984
Q ss_pred cC--CChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChH---HHHHhhccCCChHHHHHHHHHHHHHh
Q 037121 555 SS--NRTELITDSLAVLANLAE-DIQGTSTILKTSALP---VIIGLLQTLTSRAGKEYCVSILLSLC 615 (683)
Q Consensus 555 ~~--~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~---~Lv~lL~~~~s~~~ke~A~~~L~~L~ 615 (683)
.. ...++...|+.+|.+|+. +++....+.+.+... .+..+.. . +...+..++++|.|+.
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~-~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-G-TDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-S-SCTTHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-C-CcHHHHHHHHHHHhHh
Confidence 32 246799999999999986 567777887766532 2333333 3 4455778889999875
No 99
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.79 E-value=2.6e-09 Score=80.87 Aligned_cols=49 Identities=16% Similarity=0.461 Sum_probs=42.7
Q ss_pred CCCCccCCCCcccCCC---ceecc-CcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 276 NPEDFRCPISLELMTD---PVTVS-TGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~d---Pv~~~-cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
+.++..|+||++.+.+ ++.++ |||.||..||.+|+.. +.+||.|++++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 3567899999999988 77786 9999999999999987 789999998653
No 100
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=1.3e-09 Score=87.07 Aligned_cols=52 Identities=17% Similarity=0.401 Sum_probs=46.3
Q ss_pred CCCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCC
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTE 328 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~ 328 (683)
++.+++.||||++.+.+ ++++|||+||..||.+|+.. ..+||.|++.+...+
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 56778999999999999 99999999999999999984 889999998876543
No 101
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.78 E-value=1.4e-09 Score=98.53 Aligned_cols=55 Identities=20% Similarity=0.451 Sum_probs=48.6
Q ss_pred CCCccCCCCcccCCCc-------eeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCc
Q 037121 277 PEDFRCPISLELMTDP-------VTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPN 332 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dP-------v~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn 332 (683)
++++.||||++.+.+| ++++|||+||+.||.+|+.. ..+||.|++.+....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence 5689999999999999 88999999999999999987 6799999999877665443
No 102
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.76 E-value=2e-09 Score=81.92 Aligned_cols=46 Identities=15% Similarity=0.142 Sum_probs=41.0
Q ss_pred CCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 277 PEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
.+++.||||++.+.+|++++|||+||+.||.+| ...||.|++.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 457899999999999999999999999999873 6789999988754
No 103
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.76 E-value=1.8e-07 Score=105.55 Aligned_cols=264 Identities=15% Similarity=0.141 Sum_probs=189.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIV 457 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~ 457 (683)
.++.|...+.+.+..++..|+..|..++...+.. ....-.+|.+..+..+++...+..|+.++..++..-... .
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~---~ 161 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA---V 161 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---H
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---H
Confidence 4556656666778899999999999999765432 122345777778888889999999999999987654321 2
Q ss_pred hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchh
Q 037121 458 ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNH 537 (683)
Q Consensus 458 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~ 537 (683)
....++.+..++.+. +..+|..|+.+|..++........ . ...+|.|..++.+++..++..|+.+|..++..-+..
T Consensus 162 ~~~l~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~~~--~-~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~ 237 (588)
T 1b3u_A 162 KAELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLELDNV--K-SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 237 (588)
T ss_dssp HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCHHHH--H-HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcHHhH--H-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH
Confidence 334577777888777 899999999999999865433222 2 468899999999889999999999999887653321
Q ss_pred hhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcC
Q 037121 538 QKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSN 617 (683)
Q Consensus 538 ~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~ 617 (683)
.....+++.+..++ .+++..++..++.+|..++..... . ......++.+.++++.. ++.++..|+.+|..++..
T Consensus 238 --~~~~~~~~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~ 311 (588)
T 1b3u_A 238 --DLEALVMPTLRQAA-EDKSWRVRYMVADKFTELQKAVGP-E-ITKTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp --HHHHHTHHHHHHHH-TCSSHHHHHHHHHTHHHHHHHHCH-H-HHHHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHhCc-c-cchhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHH
Confidence 22334778888888 777889999999999999752111 1 12234578889999877 889999999999988875
Q ss_pred ChHHHHH-HHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHH
Q 037121 618 AREEVTA-SLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILH 659 (683)
Q Consensus 618 ~~~~~~~-~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~ 659 (683)
.+..... ... ..++|.+..++.+.++.+|..|.+.+..+.
T Consensus 312 ~~~~~~~~~~~--~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 312 LSADCRENVIM--SQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp SCTTTHHHHHH--HTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred hChhhhhhHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4322111 111 345777777888778888877776665543
No 104
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.76 E-value=4.1e-09 Score=88.88 Aligned_cols=50 Identities=14% Similarity=0.382 Sum_probs=43.8
Q ss_pred CCCCccCCCCcccCCC---ceeccCcccccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 276 NPEDFRCPISLELMTD---PVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~d---Pv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
..++..||||++.+.+ ++.++|||.||..||.+|+.. +.+||.|+..+..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 3567899999999987 778899999999999999986 7799999987753
No 105
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.73 E-value=7e-08 Score=111.72 Aligned_cols=197 Identities=14% Similarity=0.124 Sum_probs=150.0
Q ss_pred cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHH-HHhhhcCCHHHHHHHHHHHHHcccCC--c
Q 037121 459 SGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPAL-VKLIEEGTDCGKKNAVVAIFGLLLSQ--G 535 (683)
Q Consensus 459 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~L-v~lL~~~~~~~~~~A~~aL~nLs~~~--~ 535 (683)
.+.+.++++.|+++ +.+.|..|+++|.+|+.+...+..+.. .++|..+ ..+|.+.+..++..|+++|.||+.+. +
T Consensus 33 ~~~i~Pll~~L~S~-~~~~r~~A~~al~~l~~~~~~~~l~~~-~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 33 EDKILPVLKDLKSP-DAKSRTTAAGAIANIVQDAKCRKLLLR-EQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HHTTHHHHHHHSSS-CCSHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhhHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCcHHHHHHHH-cCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 34566788889998 889999999999999998888888887 7777665 56788889999999999999999865 4
Q ss_pred hhhhHhhcCcHHHHHHHHccC--------C-----C-------hhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHh
Q 037121 536 NHQKVLDAGTVPLLADILASS--------N-----R-------TELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGL 594 (683)
Q Consensus 536 n~~~iv~~g~v~~Lv~lL~~~--------~-----~-------~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~l 594 (683)
.+..+++.|++++|..+|... . . ..+.+.++.+|++||. +.+....+...++++.|+..
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 689999999999999998420 0 0 1355678899999985 67777888888889999997
Q ss_pred hccC--CChHHHHHHHHHHHHHhcCChHHHHHHHhcCCC---cHHHHHHhHhcCCHHHHHHHHHHHHHHHH
Q 037121 595 LQTL--TSRAGKEYCVSILLSLCSNAREEVTASLAKDPS---LMNSLYSLTTDGTSQARKKARSLIKILHK 660 (683)
Q Consensus 595 L~~~--~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g---~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 660 (683)
|.+. ........|+.+|..++..+. ...+.+.. .| ++..+..+.. ++...+..++++|.++..
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~dn~-~~~~~i~~-~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSEDNL-KVGQAITD-DQETHVYDVLLKLAT-GTDPRAVMACGVLHNVFT 258 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHT-CCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhccCH-HHHHHHHh-cchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHhh
Confidence 6432 145789999999999999874 45566655 34 3344444433 444456677787776643
No 106
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=4.9e-09 Score=84.92 Aligned_cols=49 Identities=20% Similarity=0.411 Sum_probs=43.4
Q ss_pred CCCccCCCCcccCCCc---eeccCcccccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 277 PEDFRCPISLELMTDP---VTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dP---v~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
.++..|+||++.+.++ +.++|||.||..||.+|+.. +.+||.|++.+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 4678999999999888 67899999999999999987 6799999987754
No 107
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.69 E-value=1.1e-08 Score=90.21 Aligned_cols=50 Identities=12% Similarity=0.254 Sum_probs=42.3
Q ss_pred CCCccCCCCcccCCCce------------------eccCcccccHHHHHHHHHh----CCCCCCCCCcccCC
Q 037121 277 PEDFRCPISLELMTDPV------------------TVSTGQTYDRSSIQKWLKA----GNMLCPKTGEKLTN 326 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv------------------~~~cght~~r~cI~~w~~~----~~~~CP~c~~~l~~ 326 (683)
+.+..||||++.|.+|+ +++|||.||+.||.+|+.. .+.+||.|+..+..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 34569999999998876 6799999999999999963 36799999987754
No 108
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.68 E-value=1.3e-06 Score=99.34 Aligned_cols=263 Identities=14% Similarity=0.103 Sum_probs=184.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchh-h
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGK-K 454 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r-~ 454 (683)
+..++.+.+.|.+.++.+|..|+..+..+...+++. +.+.|+++.|..+|.++|+.++.+|+.+|..++.+.... .
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 446777888999999999999999999999876652 333578899999999999999999999999998775432 1
Q ss_pred HHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccC-
Q 037121 455 VIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLS- 533 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~- 533 (683)
.-...+.+..|+..+... ++..+.....+|..++..++.. . ...++.+..++++.++.++..|++++.++...
T Consensus 197 ~~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~~--~---~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~ 270 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDRE--A---QSICERVTPRLSHANSAVVLSAVKVLMKFLELL 270 (591)
T ss_dssp CCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHHH--H---HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSC
T ss_pred hhccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChHH--H---HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhcc
Confidence 111345577788888776 7778888888888777543211 1 34688888899998999999999999999742
Q ss_pred ---CchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-Chh------------------hH-HHH------Hh
Q 037121 534 ---QGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQ------------------GT-STI------LK 584 (683)
Q Consensus 534 ---~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~------------------~~-~~i------~~ 584 (683)
++.... +-..+.+.|+.++ + +++.++..|+..|..++. .++ .| .++ ..
T Consensus 271 ~~~~~~~~~-~~~~~~~~L~~L~-~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~ 347 (591)
T 2vgl_B 271 PKDSDYYNM-LLKKLAPPLVTLL-S-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLAS 347 (591)
T ss_dssp CBTTBSHHH-HHHHTHHHHHHHT-T-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHH-HHHHHHHHHHHHh-c-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCC
Confidence 222222 2234567777665 3 567888888888877752 111 11 111 12
Q ss_pred cCC----hHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHH
Q 037121 585 TSA----LPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKIL 658 (683)
Q Consensus 585 ~g~----i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l 658 (683)
... ++.|..++... +...+..++.++..++...+... ...++.|+.++....+.++..+...++.+
T Consensus 348 ~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~~~-------~~~v~~Ll~ll~~~~~~v~~e~i~~l~~i 417 (591)
T 2vgl_B 348 QANIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQSA-------ERCVSTLLDLIQTKVNYVVQEAIVVIRDI 417 (591)
T ss_dssp SSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHHHH-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChhHH-------HHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 222 33455566665 78889999999999998763221 12478888899888888877766555544
No 109
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.61 E-value=7.9e-09 Score=83.44 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=41.4
Q ss_pred CCCCccCCCCcccCCCceeccCccc-ccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 276 NPEDFRCPISLELMTDPVTVSTGQT-YDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~dPv~~~cght-~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
+.+++.|+||++.+.+|+.++|||+ ||+.|+.+| ..||.|++++..
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 3457899999999999999999999 999999998 789999988754
No 110
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.59 E-value=2.7e-08 Score=104.60 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=45.1
Q ss_pred CCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCC
Q 037121 278 EDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNT 327 (683)
Q Consensus 278 ~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~ 327 (683)
....||||++.+.+|+.++|||+||..||..|+..+..+||.|+.++...
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 34799999999999999999999999999999996688999999987643
No 111
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.54 E-value=8.7e-07 Score=100.85 Aligned_cols=258 Identities=17% Similarity=0.078 Sum_probs=185.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhh
Q 037121 379 SRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVE 458 (683)
Q Consensus 379 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~ 458 (683)
...+++.+.+.+.+.++-+.-.+..+++.+++.. .-++..|.+-|.++|+.++..|+.+|.++... + +.
T Consensus 51 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~-~-----~~ 119 (591)
T 2vgl_B 51 FPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNPLIRALAVRTMGCIRVD-K-----IT 119 (591)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSG-G-----GH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCChH-H-----HH
Confidence 4456677888888888888778888887654432 23567888889999999999999999998621 1 12
Q ss_pred cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchh-
Q 037121 459 SGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNH- 537 (683)
Q Consensus 459 ~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~- 537 (683)
...++.+...|.+. ++.+|..|+.++..+...... .+ ...++++.|..+|.+.++.++..|+.+|..++......
T Consensus 120 ~~l~~~l~~~L~d~-~~~VRk~A~~al~~i~~~~p~--~~-~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~ 195 (591)
T 2vgl_B 120 EYLCEPLRKCLKDE-DPYVRKTAAVCVAKLHDINAQ--MV-EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSN 195 (591)
T ss_dssp HHHHHHHHHHSSCS-CHHHHHHHHHHHHHHHHSSCC--CH-HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCC
T ss_pred HHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhhChh--hc-ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCcc
Confidence 33567788888877 999999999999999764321 11 11467899999999999999999999999998865432
Q ss_pred hhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCC-hhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 037121 538 QKVLDAGTVPLLADILASSNRTELITDSLAVLANLAED-IQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCS 616 (683)
Q Consensus 538 ~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~ 616 (683)
..-...+.+..|+..+ .+.++-.+...+.+|..++.. +.... ..++.+..++++. ++.++..|+.++..+..
T Consensus 196 ~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~-~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 196 LLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHA-NSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp SCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSS-TTHHHHHHHHHHHHSCC
T ss_pred chhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHhh
Confidence 1112234577788887 566777888888888888743 22221 2356777778877 88999999999999874
Q ss_pred CC--hHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHh
Q 037121 617 NA--REEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 617 ~~--~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 661 (683)
.- +.+..+.+. ..+.+.|+.++ ++++.+|.-|...+..+...
T Consensus 269 ~~~~~~~~~~~~~--~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 269 LLPKDSDYYNMLL--KKLAPPLVTLL-SGEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp SCCBTTBSHHHHH--HHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHH--HHHHHHHHHHh-cCCccHHHHHHHHHHHHHHh
Confidence 21 122233332 23477888766 47899999998888877654
No 112
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.53 E-value=1.6e-08 Score=91.41 Aligned_cols=56 Identities=20% Similarity=0.445 Sum_probs=49.4
Q ss_pred CCCCccCCCCcccCCCc-------eeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCCCCCc
Q 037121 276 NPEDFRCPISLELMTDP-------VTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPN 332 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~dP-------v~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn 332 (683)
-++.+.||||++.+.+| +.++|||+||..||.+|+.. ..+||.|+..+...++.|+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceee
Confidence 35788999999999988 88899999999999999998 7799999999887766654
No 113
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=1e-07 Score=78.33 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=39.8
Q ss_pred CCccCCCCcccCCC--------------ceec-cCcccccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 278 EDFRCPISLELMTD--------------PVTV-STGQTYDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 278 ~~f~CpIc~~~m~d--------------Pv~~-~cght~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
++..|+||++.|.+ ++.+ +|||.|++.||.+|+.. +.+||.|++++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 46679999999877 4444 59999999999999997 6799999987653
No 114
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=6e-08 Score=78.43 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=40.4
Q ss_pred CCCCccCCCCcccCCCceeccCccc-ccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 276 NPEDFRCPISLELMTDPVTVSTGQT-YDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~dPv~~~cght-~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
+.+++.||||++.+.+||.++|||+ ||+.|+.+ ...||.|++++..
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 3557899999999999999999999 99999964 4789999998764
No 115
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.43 E-value=4.2e-06 Score=99.17 Aligned_cols=273 Identities=13% Similarity=0.093 Sum_probs=185.4
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcCchhhHHHHh--cCChHHHHhhcCCC--CHHHHHHHHHHHHhhccCC-
Q 037121 378 MSRFLARRLFFG--TNEEKNKAAYEIRLLAKSNIFNRSCIVE--SGAIPPLLNLLSSP--DQCVQENAVAALLKLSKHT- 450 (683)
Q Consensus 378 ~i~~Lv~~L~s~--~~~~~~~a~~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~--d~~~q~~A~~aL~nLs~~~- 450 (683)
.++.|+..+.++ ++..+..++..|..+++.-.. ..+.. ...++.++..+.++ +..++..|+.+|.++...-
T Consensus 129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (876)
T 1qgr_A 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (876)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 577888888888 889999999999999875311 11111 24567788888876 6899999999999887431
Q ss_pred ch-hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchh--HHHhhccCCChHHHHHhhhcCCHHHHHHHHHHH
Q 037121 451 SG-KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGY--RKLIGETPKAIPALVKLIEEGTDCGKKNAVVAI 527 (683)
Q Consensus 451 ~~-r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~--~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL 527 (683)
.+ .........++.+...+... +.+++..++.+|..+...... ...+ . ...++.++..+.+.++.++..|+..+
T Consensus 207 ~~~~~~~~~~~il~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~-~~l~~~~~~~~~~~~~~v~~~al~~l 283 (876)
T 1qgr_A 207 ANFDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYM-G-PALFAITIEAMKSDIDEVALQGIEFW 283 (876)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSGGGCHHHH-T-TTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhHHHHHHHH-H-HHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 11 11111122566666666666 789999999999988753221 1222 1 36788888888888888999999988
Q ss_pred HHcccCCch------------------hhhHh---hcCcHHHHHHHHcc------CCChhHHHHHHHHHHHhhCChhhHH
Q 037121 528 FGLLLSQGN------------------HQKVL---DAGTVPLLADILAS------SNRTELITDSLAVLANLAEDIQGTS 580 (683)
Q Consensus 528 ~nLs~~~~n------------------~~~iv---~~g~v~~Lv~lL~~------~~~~~~~~~al~iL~nLa~~~~~~~ 580 (683)
.+++..... ..... -..+++.+++.|.. +.+..++..|+.+|..++..-. .
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~ 361 (876)
T 1qgr_A 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--D 361 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--G
T ss_pred HHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--H
Confidence 888754210 00011 12356777777732 2245677888888888875211 1
Q ss_pred HHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCCh-HHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHH
Q 037121 581 TILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAR-EEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILH 659 (683)
Q Consensus 581 ~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~-~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~ 659 (683)
.+.. ..++.+...+.+. +...|+.|+.+|..++.+.. +.....+ .++++.|+..+.+.++.+|..|++++..+.
T Consensus 362 ~~~~-~~l~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~~---~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~ 436 (876)
T 1qgr_A 362 DIVP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLV---IQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436 (876)
T ss_dssp GGHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHH---HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred hhHH-HHHHHHHHHccCC-ChHHHHHHHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 1111 2355666677666 88899999999999998754 3333322 357999999999999999999999999887
Q ss_pred Hhh
Q 037121 660 KFI 662 (683)
Q Consensus 660 ~~~ 662 (683)
...
T Consensus 437 ~~~ 439 (876)
T 1qgr_A 437 ELL 439 (876)
T ss_dssp HHC
T ss_pred HhC
Confidence 764
No 116
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.42 E-value=1.1e-06 Score=103.99 Aligned_cols=275 Identities=13% Similarity=0.131 Sum_probs=181.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCc-hhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchh--
Q 037121 377 LMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNI-FNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGK-- 453 (683)
Q Consensus 377 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r-- 453 (683)
..++.+.+.+.+.++..+..|+..+..++.... ..-.... ..++|.|+..+.++++.++..++++|++++..-...
T Consensus 369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 355667777788899999999999999986532 2211122 257889999999999999999999999998542110
Q ss_pred -hHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchh--HHHhhc-cCCChHHHHHhhhcCC--HHHHHHHHHHH
Q 037121 454 -KVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGY--RKLIGE-TPKAIPALVKLIEEGT--DCGKKNAVVAI 527 (683)
Q Consensus 454 -~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~--~~~i~~-~~g~i~~Lv~lL~~~~--~~~~~~A~~aL 527 (683)
.. .-...++.++..+.+. ..++..|+++|.+++..-.. ...+.. ....++.|+.++.+.+ ..++..++.+|
T Consensus 448 ~~~-~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 448 PQQ-HLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp TTT-THHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred CHH-HHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 11 1234577788888653 78999999999988753210 011100 0235677788887533 67888999999
Q ss_pred HHcccCCchh-hhHhhcCcHHHHHHHHccC--------------CChhHHHHHHHHHHHhhCC-hhhHHHHHhcCChHHH
Q 037121 528 FGLLLSQGNH-QKVLDAGTVPLLADILASS--------------NRTELITDSLAVLANLAED-IQGTSTILKTSALPVI 591 (683)
Q Consensus 528 ~nLs~~~~n~-~~iv~~g~v~~Lv~lL~~~--------------~~~~~~~~al~iL~nLa~~-~~~~~~i~~~g~i~~L 591 (683)
..+....+.. ...+. ..++.+++.|... ....++..++.+|.+++.. +....... ...++.+
T Consensus 525 ~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l 602 (861)
T 2bpt_A 525 TTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLF 602 (861)
T ss_dssp HHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHH
T ss_pred HHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHH
Confidence 9998765432 22222 3667777776321 1344667788888888742 21111111 1235667
Q ss_pred HHhhccCCCh-HHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHh
Q 037121 592 IGLLQTLTSR-AGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 592 v~lL~~~~s~-~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 661 (683)
+.+++.. +. ..++.++.++..++...+......+ ..++|.|...+.+.++.++..|..++..+.+.
T Consensus 603 ~~~l~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~l---~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 603 FRLLEKK-DSAFIEDDVFYAISALAASLGKGFEKYL---ETFSPYLLKALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp HHHHHST-TGGGTHHHHHHHHHHHHHHHGGGGHHHH---HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHccC-CCCcHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 7778776 55 7899999888888765433333333 24688999998888888998888888766553
No 117
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.41 E-value=5.1e-08 Score=82.65 Aligned_cols=66 Identities=11% Similarity=0.289 Sum_probs=47.6
Q ss_pred CCccCCCCcccCCCceec---cCcccccHHHHHHHHHh----C---CCCCCC--CCcc--cCCCCCCCcHHHHHHHHHHH
Q 037121 278 EDFRCPISLELMTDPVTV---STGQTYDRSSIQKWLKA----G---NMLCPK--TGEK--LTNTELLPNTTLKKLIHQFC 343 (683)
Q Consensus 278 ~~f~CpIc~~~m~dPv~~---~cght~~r~cI~~w~~~----~---~~~CP~--c~~~--l~~~~l~pn~~l~~~i~~~~ 343 (683)
+.+.||||++.+.+|+.+ +|||.||+.|+.+|+.. | ...||. |+.. +....+ .+....++++.|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i-~~ll~~~~~~ky~ 82 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI-ECMVAAEIMQRYK 82 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH-HHHSCHHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH-HHHCCHHHHHHHH
Confidence 578999999999999865 69999999999999975 3 247999 9887 543221 1222244555555
Q ss_pred H
Q 037121 344 A 344 (683)
Q Consensus 344 ~ 344 (683)
.
T Consensus 83 ~ 83 (94)
T 1wim_A 83 K 83 (94)
T ss_dssp H
T ss_pred H
Confidence 4
No 118
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.40 E-value=1.6e-07 Score=73.35 Aligned_cols=48 Identities=21% Similarity=0.186 Sum_probs=42.8
Q ss_pred CCCccCCCCcccCCCceec--cCccc-ccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 277 PEDFRCPISLELMTDPVTV--STGQT-YDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv~~--~cght-~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
+++..|+||++...|++.+ +|||. ||..|+.+|+.. +..||.|++++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 4567899999999999987 99999 899999999986 678999998764
No 119
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.39 E-value=2.9e-05 Score=88.73 Aligned_cols=255 Identities=13% Similarity=0.079 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhh
Q 037121 375 MKLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKK 454 (683)
Q Consensus 375 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~ 454 (683)
.+..++.+...|.+.++.++..|+..+..+.+.+++.. .++++.+..+|.+.|+.++..|+.+|..++..+....
T Consensus 140 ~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~ 214 (618)
T 1w63_A 140 CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDML 214 (618)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHH
Confidence 34567888899999999999999999999998777543 2688899999999999999999999999987643211
Q ss_pred HHhhcCcHHHHHHHHcC--------------CCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhh------c
Q 037121 455 VIVESGGLKVILKVLKS--------------GLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIE------E 514 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~--------------~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~------~ 514 (683)
... ...++.++.+|.+ ..++..+...+.+|..++..+.... ...++.|..++. +
T Consensus 215 ~~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~ 288 (618)
T 1w63_A 215 AHF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSKN 288 (618)
T ss_dssp HHH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSST
T ss_pred HHH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccccc
Confidence 111 3568888887763 1267778888888888887543211 224455555543 2
Q ss_pred CCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHh
Q 037121 515 GTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGL 594 (683)
Q Consensus 515 ~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~l 594 (683)
.+..+...|+.++.++...+ .+.. .+++.|..+| .++++.++..|+..|..++.... .+++ .....++..
T Consensus 289 ~~~aV~~ea~~~i~~l~~~~----~l~~-~a~~~L~~~L-~~~d~~vr~~aL~~L~~i~~~~p---~~~~-~~~~~i~~~ 358 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKSES----GLRV-LAINILGRFL-LNNDKNIRYVALTSLLKTVQTDH---NAVQ-RHRSTIVDC 358 (618)
T ss_dssp HHHHHHHHHHHHHHHSCCCH----HHHH-HHHHHHHHHH-TCSSTTTHHHHHHHHHHHHHHHH---HHHG-GGHHHHHHG
T ss_pred hHHHHHHHHHHHHHhcCCCH----HHHH-HHHHHHHHHH-hCCCCchHHHHHHHHHHHHhhCH---HHHH-HHHHHHHHH
Confidence 23467778888888875432 1222 4678888888 66778899999999988875311 1222 345677777
Q ss_pred hccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHH
Q 037121 595 LQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHK 660 (683)
Q Consensus 595 L~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 660 (683)
+.+. +..+|..|+.+|..++...+ + .. ++..|...+.+.+...|+.+...+..+..
T Consensus 359 l~d~-d~~Ir~~alelL~~l~~~~n--v-~~------iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 359 LKDL-DVSIKRRAMELSFALVNGNN--I-RG------MMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp GGSS-CHHHHHHHHHHHHHHCCSSS--T-HH------HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred ccCC-ChhHHHHHHHHHHHHccccc--H-HH------HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 8776 78899999999999988643 1 11 24556667777788888887777776654
No 120
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.37 E-value=1.2e-05 Score=77.72 Aligned_cols=220 Identities=14% Similarity=0.073 Sum_probs=159.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCch-hhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch-h
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIF-NRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-K 453 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~-r 453 (683)
+..+..|...|...++..+..|+..|..+-+.-+. .+.... ...+|.++.++++.|..+..+|+.+|..|-.+.+- .
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence 33677888999999999999999999999886433 333333 45689999999999999999999999998766543 4
Q ss_pred hHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccC
Q 037121 454 KVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLS 533 (683)
Q Consensus 454 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 533 (683)
..+.. .+.++..++.++ +.-.++.|+..|..+...... .+++..|.+++.+.+.+++..|+.+|.|++..
T Consensus 111 ~~y~K--l~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHHH--HHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred HHHHH--HHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence 44433 367788888888 889999999999999332211 34567788888889999999999999999987
Q ss_pred CchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHH-hh-ccCCChHHHHHHHHH
Q 037121 534 QGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIG-LL-QTLTSRAGKEYCVSI 610 (683)
Q Consensus 534 ~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~-lL-~~~~s~~~ke~A~~~ 610 (683)
.++...+ .+++.-+-.+| ++.++.+++.|+.+|..+.+.+-.-..+-+--++...++ +. ..| .|..+..|-.+
T Consensus 181 S~D~~i~--~~I~~eI~elL-~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~-~~~~~~ka~~v 255 (265)
T 3b2a_A 181 SADSGHL--TLILDEIPSLL-QNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREG-APIIRLKAKKV 255 (265)
T ss_dssp CSSCCCG--GGTTTTHHHHH-TCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSS-CHHHHHHHHHH
T ss_pred cCCHHHH--HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHH
Confidence 7643322 13455567778 777999999999999999875322111111112344444 22 345 67777776554
No 121
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.35 E-value=4.9e-06 Score=90.67 Aligned_cols=269 Identities=10% Similarity=0.093 Sum_probs=180.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCC--CHHHHHHHHHHHHhhccCCch-hhHH
Q 037121 380 RFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSP--DQCVQENAVAALLKLSKHTSG-KKVI 456 (683)
Q Consensus 380 ~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~--d~~~q~~A~~aL~nLs~~~~~-r~~i 456 (683)
..|+..|.+.+... ..++..|..++........ -.+.+|.|+..+.++ +..+++.|+.+|..++.+-.. ...-
T Consensus 93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~---w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~ 168 (462)
T 1ibr_B 93 NYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD 168 (462)
T ss_dssp HHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG
T ss_pred HHHHHHhCCCCchh-hHHHHHHHHHHHHhccccc---cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHh
Confidence 45677777777667 7788888888875311110 146889999999888 999999999999999864311 1111
Q ss_pred hhcCcHHHHHHHHcCCC-CHHHHHHHHHHHHHhccCch-hHH-HhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccC
Q 037121 457 VESGGLKVILKVLKSGL-SLEARQIAAATLFYLTSVKG-YRK-LIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLS 533 (683)
Q Consensus 457 ~~~g~i~~Lv~lL~~~~-~~e~~~~Aa~~L~~Ls~~~~-~~~-~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 533 (683)
.-...++.++..|.+.. +.++|..|+.++.++...-+ +-. .... .-.++.|...+.+++..++..++.+|..++..
T Consensus 169 ~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 247 (462)
T 1ibr_B 169 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER-HFIMQVVCEATQCPDTRVRVAALQNLVKIMSL 247 (462)
T ss_dssp GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 12346788888888763 68999999999998764321 110 0001 11466677777778889999999999999865
Q ss_pred Cchh-hhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHH------------------HHh---cCChHHH
Q 037121 534 QGNH-QKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTST------------------ILK---TSALPVI 591 (683)
Q Consensus 534 ~~n~-~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~------------------i~~---~g~i~~L 591 (683)
.... ...+..++++.++..+ .+.++.++..|+..+..++........ +.+ ...+|.+
T Consensus 248 ~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l 326 (462)
T 1ibr_B 248 YYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326 (462)
T ss_dssp CGGGCTTTTTTTHHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHH
Confidence 4322 2222226788888888 677889999999999988764311111 111 1235666
Q ss_pred HHhhccC------CChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHH
Q 037121 592 IGLLQTL------TSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHK 660 (683)
Q Consensus 592 v~lL~~~------~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 660 (683)
++.+... .+...+..|..+|..++...++.+. ..+++.+...+.+.+.+.|..|..++..+..
T Consensus 327 ~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~------~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~ 395 (462)
T 1ibr_B 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV------PHVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (462)
T ss_dssp HHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH------HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHH------HHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 6666432 1345788999999888876543221 2357888888888999999999998887765
No 122
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.34 E-value=9.4e-06 Score=96.15 Aligned_cols=273 Identities=12% Similarity=0.066 Sum_probs=184.2
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcCchhh-HHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch-
Q 037121 377 LMSRFLARRLFFG--TNEEKNKAAYEIRLLAKSNIFNR-SCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG- 452 (683)
Q Consensus 377 ~~i~~Lv~~L~s~--~~~~~~~a~~~L~~La~~~~~~r-~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~- 452 (683)
..++.+...+.+. +.+++..|++.+..++..-..+- .......+++.+..++.+.+.+++..|+.+|..+......
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 3567777888776 68899999999998875322110 0111123577788888888999999999999998854332
Q ss_pred hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchh----------------------HHHhhccCCChHHHHH
Q 037121 453 KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGY----------------------RKLIGETPKAIPALVK 510 (683)
Q Consensus 453 r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~----------------------~~~i~~~~g~i~~Lv~ 510 (683)
-...+....++.++..+... +..++..|+.++..++..... ..... ...+|.++.
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ll~~ll~ 328 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL--QYLVPILTQ 328 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH--HHHhHHHHH
Confidence 11223346788888887776 788999999888888753210 00000 235667777
Q ss_pred hhhc-------CCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCCh--hhHHH
Q 037121 511 LIEE-------GTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDI--QGTST 581 (683)
Q Consensus 511 lL~~-------~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~--~~~~~ 581 (683)
.+.. ++...++.|+.+|..++..-+. .++. .+++.+...+ .+++..++..|+.+|+.++... +....
T Consensus 329 ~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~-~~l~~l~~~l-~~~~~~~r~~a~~~l~~i~~~~~~~~~~~ 404 (876)
T 1qgr_A 329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP-HVLPFIKEHI-KNPDWRYRDAAVMAFGCILEGPEPSQLKP 404 (876)
T ss_dssp HTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHT-TCSSHHHHHHHHHHHHHTSSSSCHHHHHH
T ss_pred HhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhHH-HHHHHHHHHc-cCCChHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 7752 2346788888888888764331 2222 4566666667 6678899999999999998642 32222
Q ss_pred HHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHH--HHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHH
Q 037121 582 ILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEV--TASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILH 659 (683)
Q Consensus 582 i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~--~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~ 659 (683)
.. ...++.++..+.+. ++.++..|+.+|.+++...+... ...+ ..+++.|+..+.+. ++++..|++++..+.
T Consensus 405 ~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~l---~~~l~~l~~~l~~~-~~v~~~a~~al~~l~ 478 (876)
T 1qgr_A 405 LV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLPEAAINDVYL---APLLQCLIEGLSAE-PRVASNVCWAFSSLA 478 (876)
T ss_dssp HH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTSSTTTH---HHHHHHHHHHTTSC-HHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCchhcccHHHH---HHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Confidence 22 23688888888877 88999999999999997643210 0111 23577888888774 889999999988777
Q ss_pred Hhh
Q 037121 660 KFI 662 (683)
Q Consensus 660 ~~~ 662 (683)
...
T Consensus 479 ~~~ 481 (876)
T 1qgr_A 479 EAA 481 (876)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 123
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.34 E-value=2.4e-07 Score=72.11 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=41.7
Q ss_pred CccCCCCcccCCCceec--cCccc-ccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 279 DFRCPISLELMTDPVTV--STGQT-YDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv~~--~cght-~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
+..|+||++...|++++ +|||. ||..|+.+|+.. ...||.|++++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 56899999999999988 99998 999999999987 579999999874
No 124
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.33 E-value=8.5e-07 Score=109.65 Aligned_cols=271 Identities=13% Similarity=0.080 Sum_probs=184.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHH
Q 037121 377 LMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVI 456 (683)
Q Consensus 377 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i 456 (683)
..+..|+..+.+.+.+.|..|...|.+..+.+...-..-.....++.|++.|.+.+..+|..|+.+|.+++..-.. ..
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~ 83 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQ 83 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HH
Confidence 3577888999999999999999998887653311100011124578899999999999999999999999864332 11
Q ss_pred hhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhH-------HHhhccCCChHHHHHhhh-cCCHHHHHHHHHHHH
Q 037121 457 VESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYR-------KLIGETPKAIPALVKLIE-EGTDCGKKNAVVAIF 528 (683)
Q Consensus 457 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~-------~~i~~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~ 528 (683)
. ...++.++..|.++ +..+|..|+.+|..++..-... ... . ...+|.|+..+. +++...+..|+.+|.
T Consensus 84 ~-~~i~~~Ll~~l~d~-~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~-~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 84 V-ETIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANV-C-KKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp H-HHHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHH-H-HHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCCcccccchHHHH-H-HHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 1 23567777777776 6678888888888876532211 111 1 357899999988 477899999999999
Q ss_pred HcccCCch-hhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHH
Q 037121 529 GLLLSQGN-HQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYC 607 (683)
Q Consensus 529 nLs~~~~n-~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A 607 (683)
.++...+. ... .-..+++.|+..| .+++..++..|+.+|..++..... .+ -...++.++..+....+...+..+
T Consensus 160 ~~~~~~~~~l~~-~~~~ll~~l~~~L-~~~~~~vR~~a~~al~~l~~~~~~--~~-~~~~l~~l~~~L~~~~~~~~r~~a 234 (1230)
T 1u6g_C 160 DMLSRQGGLLVN-FHPSILTCLLPQL-TSPRLAVRKRTIIALGHLVMSCGN--IV-FVDLIEHLLSELSKNDSMSTTRTY 234 (1230)
T ss_dssp HHHHHTCSSCTT-THHHHHHHHGGGG-GCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTH
T ss_pred HHHHHhHhHHHH-HHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHhcCH--HH-HHHHHHHHHHHhccCCchhHHHHH
Confidence 99864321 111 1124566677777 667889999999999999863221 12 123478888877654234566677
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHh
Q 037121 608 VSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 608 ~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 661 (683)
+.++..++...+..... . -..+++.++..+.+.++.+|+.|..++..+.+.
T Consensus 235 ~~~l~~l~~~~~~~~~~-~--l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 235 IQCIAAISRQAGHRIGE-Y--LEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHHHHHHSSGGGTT-S--CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhHHHHHH-H--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 78877777654332211 1 146899999999988899999988888876653
No 125
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.31 E-value=3.2e-05 Score=88.36 Aligned_cols=255 Identities=10% Similarity=0.090 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhh
Q 037121 375 MKLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKK 454 (683)
Q Consensus 375 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~ 454 (683)
....+..+.+.|.+.++..+..|++.|..+.. ++ +. ...++.+..+|.+.++.++..|+.++.++......
T Consensus 105 ~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~-- 175 (618)
T 1w63_A 105 HLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS--SE----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE-- 175 (618)
T ss_dssp HHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HH----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG--
T ss_pred HHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HH----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH--
Confidence 34577889999999999999999988888763 22 22 35678999999999999999999999999864322
Q ss_pred HHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhc---------------CCHHH
Q 037121 455 VIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEE---------------GTDCG 519 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~---------------~~~~~ 519 (683)
++ .+.++.+..+|.+. +..++..|+.+|..++..+....... ...+|.|+.+|.+ .++..
T Consensus 176 -~v-~~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 250 (618)
T 1w63_A 176 -LM-EMFLPATKNLLNEK-NHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL 250 (618)
T ss_dssp -GG-GGGGGGTTTSTTCC-CHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred -HH-HHHHHHHHHHhCCC-CHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence 22 25677777888777 89999999999999987643221112 3578888887764 37888
Q ss_pred HHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHcc-----CCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHh
Q 037121 520 KKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILAS-----SNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGL 594 (683)
Q Consensus 520 ~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~-----~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~l 594 (683)
+...+.+|..++..+... .....+.|..++.. +.+..+...|+.++..+...+..+. .++..|..+
T Consensus 251 q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~~~ 321 (618)
T 1w63_A 251 QVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILGRF 321 (618)
T ss_dssp HHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH
Confidence 888999999988754321 12355566666521 1245788889999988866543222 356788888
Q ss_pred hccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHH
Q 037121 595 LQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHK 660 (683)
Q Consensus 595 L~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 660 (683)
+.+. ++..|..|+.+|..++...+ ..+. .....++..+.+.+..+|++|..+|..+..
T Consensus 322 L~~~-d~~vr~~aL~~L~~i~~~~p----~~~~---~~~~~i~~~l~d~d~~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 322 LLNN-DKNIRYVALTSLLKTVQTDH----NAVQ---RHRSTIVDCLKDLDVSIKRRAMELSFALVN 379 (618)
T ss_dssp HTCS-STTTHHHHHHHHHHHHHHHH----HHHG---GGHHHHHHGGGSSCHHHHHHHHHHHHHHCC
T ss_pred HhCC-CCchHHHHHHHHHHHHhhCH----HHHH---HHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence 8877 88999999999999887532 2232 236788888999999999999998876643
No 126
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.29 E-value=4.8e-07 Score=78.04 Aligned_cols=47 Identities=19% Similarity=0.373 Sum_probs=40.2
Q ss_pred CCccCCCCcccCCCc------------------eeccCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 278 EDFRCPISLELMTDP------------------VTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 278 ~~f~CpIc~~~m~dP------------------v~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
++-.|+||++.|.+| +.++|||.|+..||.+|+.. +.+||.|++.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 356799999999876 33689999999999999987 889999998753
No 127
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.29 E-value=2e-05 Score=93.18 Aligned_cols=273 Identities=12% Similarity=0.083 Sum_probs=183.5
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCchh-h--HHHHhcCChHHHHhhcCCC--CHHHHHHHHHHHHhhccCCc
Q 037121 378 MSRFLARRLFFG-TNEEKNKAAYEIRLLAKSNIFN-R--SCIVESGAIPPLLNLLSSP--DQCVQENAVAALLKLSKHTS 451 (683)
Q Consensus 378 ~i~~Lv~~L~s~-~~~~~~~a~~~L~~La~~~~~~-r--~~i~~~G~i~~Lv~lL~s~--d~~~q~~A~~aL~nLs~~~~ 451 (683)
.++.|++.+.++ ++..+..++..+..+++.-... + .. .....++.++..+.++ +..++..|+.+|.++...-.
T Consensus 135 ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 213 (861)
T 2bpt_A 135 LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVS-SSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK 213 (861)
T ss_dssp HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGG-GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHH-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 678899999888 8899999999999998753211 1 00 0123567777788876 89999999999998753211
Q ss_pred -h-hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchh--HHHhhccCCChHHHHHhhhcCCHHHHHHHHHHH
Q 037121 452 -G-KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGY--RKLIGETPKAIPALVKLIEEGTDCGKKNAVVAI 527 (683)
Q Consensus 452 -~-r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~--~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL 527 (683)
+ .........++.+...+.++ +.++|..++.+|..++..... ...+. ...++.+...+.+.+..++..|+..+
T Consensus 214 ~~~~~~~~~~~ll~~l~~~~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~--~~l~~~~~~~~~~~~~~vr~~a~~~l 290 (861)
T 2bpt_A 214 NNMEREGERNYLMQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYME--QALYALTIATMKSPNDKVASMTVEFW 290 (861)
T ss_dssp HHHTSHHHHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCHHHHH--HTHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHccChhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 1 10111122466666667666 889999999999888753221 11111 14667777778888889999999999
Q ss_pred HHcccCCch------------------hhhHhhcCcHHHHHHHHccC------CChhHHHHHHHHHHHhhCChhhHHHHH
Q 037121 528 FGLLLSQGN------------------HQKVLDAGTVPLLADILASS------NRTELITDSLAVLANLAEDIQGTSTIL 583 (683)
Q Consensus 528 ~nLs~~~~n------------------~~~iv~~g~v~~Lv~lL~~~------~~~~~~~~al~iL~nLa~~~~~~~~i~ 583 (683)
..++..... ...++ ..+++.++..|... .+..++..+..+|..++..-. ..+.
T Consensus 291 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~ 367 (861)
T 2bpt_A 291 STICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL 367 (861)
T ss_dssp HHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH
T ss_pred HHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH
Confidence 888765311 01111 34677888887421 224677888899988875211 0111
Q ss_pred hcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCCh-HHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhh
Q 037121 584 KTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAR-EEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFI 662 (683)
Q Consensus 584 ~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~-~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 662 (683)
. ..++.+.+.+.+. +...|+.|+.+|..++.+.. ......+ ..+++.|+..+.+.++.+|..|.+++..+..+.
T Consensus 368 ~-~l~~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~l---~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 442 (861)
T 2bpt_A 368 E-PVLEFVEQNITAD-NWRNREAAVMAFGSIMDGPDKVQRTYYV---HQALPSILNLMNDQSLQVKETTAWCIGRIADSV 442 (861)
T ss_dssp H-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHH---HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHcCCC-ChhHHHHHHHHHHHHHcCCCHHHHHHHH---HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Confidence 1 2245566667666 78899999999999997753 3333333 246899999999999999999999888777654
No 128
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.17 E-value=3e-07 Score=75.01 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=39.7
Q ss_pred CCCccCCCCcccCCCceeccCccc-ccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 277 PEDFRCPISLELMTDPVTVSTGQT-YDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv~~~cght-~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
.++..|+||++.+.+||.++|||. ||..|+.+| ..||.|++++..
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 446789999999999999999999 999999977 389999998754
No 129
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.17 E-value=1e-05 Score=80.72 Aligned_cols=181 Identities=12% Similarity=0.061 Sum_probs=135.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcCchhh-HHHHhcCChHHHHhhcC-CCCHHHHHHHHHHHHhhccCCchhhHHhhc
Q 037121 382 LARRLFFGTNEEKNKAAYEIRLLAKSNIFNR-SCIVESGAIPPLLNLLS-SPDQCVQENAVAALLKLSKHTSGKKVIVES 459 (683)
Q Consensus 382 Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r-~~i~~~G~i~~Lv~lL~-s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~ 459 (683)
+.+.+.+.+|..|..|+..|..+....+..- ..+ ..+++.|..+|. +.+..++..|+.+|..|+..-...-.-.-.
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 5677889999999999999999987632210 001 134677888884 899999999999999998532211111123
Q ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCc-h--
Q 037121 460 GGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQG-N-- 536 (683)
Q Consensus 460 g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n-- 536 (683)
..++.|+..+.+. +..+|+.|..+|..+...... ...+|.|...+.+.++.++..++..|..+....+ .
T Consensus 98 ~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~~-------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 98 ACVPSLLEKFKEK-KPNVVTALREAIDAIYASTSL-------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 4788888888887 889999999999999764321 2367888899999999999999999999654422 1
Q ss_pred hhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC
Q 037121 537 HQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE 574 (683)
Q Consensus 537 ~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~ 574 (683)
-...+. .+++.|+.+| .+.+..++..|..+|..++.
T Consensus 170 ~~~~l~-~l~p~l~~~l-~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLLK-LLTTSLVKTL-NEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHHH-HHHHHHHHHH-TSSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHH-HHHHHHHHHh-cCCChHHHHHHHHHHHHHHH
Confidence 122222 5889999999 88899999999999998875
No 130
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=2e-06 Score=67.84 Aligned_cols=45 Identities=11% Similarity=0.145 Sum_probs=40.0
Q ss_pred CCCccCCCCcccCCCceeccCccc-ccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 277 PEDFRCPISLELMTDPVTVSTGQT-YDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv~~~cght-~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
.++..|+||++...+++.++|||. ||..|+.. ...||.|++.+..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 457899999999999999999999 99999984 5789999987754
No 131
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.10 E-value=5.2e-07 Score=94.50 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=42.4
Q ss_pred CCCCCccCCCCcccCCCceeccCccc-ccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 275 LNPEDFRCPISLELMTDPVTVSTGQT-YDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~~cght-~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
.+.+++.||||++.+.+||.++|||+ ||+.|+..| ..||.|+.++..
T Consensus 291 ~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 291 RLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred hCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 45678999999999999999999999 999999988 689999988753
No 132
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.01 E-value=9e-06 Score=100.44 Aligned_cols=232 Identities=13% Similarity=0.117 Sum_probs=159.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchh--
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGK-- 453 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r-- 453 (683)
...++.|++.|.+.++++|..|+..|..++..-+.. .+ ..+++.|+..|.+++..++..|..+|..++..-...
T Consensus 47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~ 122 (1230)
T 1u6g_C 47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122 (1230)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence 346778889999889999999999999998754331 11 235688888888888899999999999887432221
Q ss_pred ----hHHhhcCcHHHHHHHHcC-CCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHH
Q 037121 454 ----KVIVESGGLKVILKVLKS-GLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIF 528 (683)
Q Consensus 454 ----~~i~~~g~i~~Lv~lL~~-~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~ 528 (683)
..-.-...++.|+..+.+ + +...+..|+.+|..++........-.. ...++.|+..+.+.+..+++.|+.+|.
T Consensus 123 ~~~~~~~~~~~llp~L~~~l~~~~-~~~~~~~al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~ 200 (1230)
T 1u6g_C 123 GSALAANVCKKITGRLTSAIAKQE-DVSVQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALG 200 (1230)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSCCS-CHHHHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 111234578889999984 5 789999999999998742110000001 346677888888888899999999999
Q ss_pred HcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHh--cCChHHHHHhhccCCChHHHHH
Q 037121 529 GLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILK--TSALPVIIGLLQTLTSRAGKEY 606 (683)
Q Consensus 529 nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~--~g~i~~Lv~lL~~~~s~~~ke~ 606 (683)
.++...+.. + -...++.|++.|....+...+..++.++..++.... . .+.. ...++.++..+... ++..|+.
T Consensus 201 ~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~-~-~~~~~l~~l~~~ll~~l~d~-~~~vR~~ 274 (1230)
T 1u6g_C 201 HLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG-H-RIGEYLEKIIPLVVKFCNVD-DDELREY 274 (1230)
T ss_dssp HHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS-G-GGTTSCTTHHHHHHHHHSSC-CTTTHHH
T ss_pred HHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhH-H-HHHHHHHHHHHHHHHHhcCC-CHHHHHH
Confidence 998765432 2 234688898888544334555667777777764211 1 1111 13477888888766 7889999
Q ss_pred HHHHHHHHhcCCh
Q 037121 607 CVSILLSLCSNAR 619 (683)
Q Consensus 607 A~~~L~~L~~~~~ 619 (683)
|+.++..++...+
T Consensus 275 a~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 275 CIQAFESFVRRCP 287 (1230)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCh
Confidence 9999888877543
No 133
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.01 E-value=8.9e-06 Score=66.20 Aligned_cols=51 Identities=14% Similarity=0.241 Sum_probs=42.6
Q ss_pred CCCCccCCCCcccC--CCceeccCc-----ccccHHHHHHHHHh-CCCCCCCCCcccCC
Q 037121 276 NPEDFRCPISLELM--TDPVTVSTG-----QTYDRSSIQKWLKA-GNMLCPKTGEKLTN 326 (683)
Q Consensus 276 ~~~~f~CpIc~~~m--~dPv~~~cg-----ht~~r~cI~~w~~~-~~~~CP~c~~~l~~ 326 (683)
..++..|+||++.+ .+|++++|+ |.|.+.||.+|+.. +..+||.|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 35567899999776 578888996 99999999999987 34799999998754
No 134
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.98 E-value=0.00028 Score=80.46 Aligned_cols=258 Identities=13% Similarity=0.120 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch
Q 037121 375 MKLMSRFLARRL--FFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG 452 (683)
Q Consensus 375 ~~~~i~~Lv~~L--~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~ 452 (683)
.+..++.+.+.| .+.++.++..|+..+..+.+.+++... ..+.++.|..+|.+.|+.++.+|+.+|..++.+...
T Consensus 144 ~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~ 220 (621)
T 2vgl_A 144 AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE 220 (621)
T ss_dssp HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH
Confidence 345667788888 788999999999999999987765322 258999999999999999999999999999865432
Q ss_pred hhHHhhcCcHHHHHHHHc----CC-C-----------CHHHHHHHHHHHHHhccCc--hhHHHhhccCCChHHHHHhhh-
Q 037121 453 KKVIVESGGLKVILKVLK----SG-L-----------SLEARQIAAATLFYLTSVK--GYRKLIGETPKAIPALVKLIE- 513 (683)
Q Consensus 453 r~~i~~~g~i~~Lv~lL~----~~-~-----------~~e~~~~Aa~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~- 513 (683)
.+ ...++.++..|. .+ . ++-.+.....+|..++..+ +.+..+.. .++.++..+.
T Consensus 221 --~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~---~L~~il~~~~~ 293 (621)
T 2vgl_A 221 --EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE---CLETILNKAQE 293 (621)
T ss_dssp --HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH---HHHHHHHHHHS
T ss_pred --HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH---HHHHHHHhhcc
Confidence 11 123444444443 22 1 4667778888888877532 22322222 4444443321
Q ss_pred --------cCCH--HHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHH
Q 037121 514 --------EGTD--CGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTIL 583 (683)
Q Consensus 514 --------~~~~--~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~ 583 (683)
+.+. .+.-.|+.++..+...+ .++. .++..|..+| .++++.++..++..|..++........+
T Consensus 294 ~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~----~~~~-~~~~~L~~~L-~~~~~niry~aL~~l~~l~~~~~~~~~~- 366 (621)
T 2vgl_A 294 PPKSKKVQHSNAKNAVLFEAISLIIHHDSEP----NLLV-RACNQLGQFL-QHRETNLRYLALESMCTLASSEFSHEAV- 366 (621)
T ss_dssp CCSCSSHHHHHHHHHHHHHHHHHHHHHCCCH----HHHH-HHHHHHHHHS-SCSCHHHHHHHHHHHHHHTTCTTTHHHH-
T ss_pred CcccccccccchHHHHHHHHHHHHHhcCCcH----HHHH-HHHHHHHHHh-cCCCcchHHHHHHHHHHHHhccCcHHHH-
Confidence 1122 66777888888886322 2222 3677888888 6778999999999999998643212222
Q ss_pred hcCChHHHHHhhc-cCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHH
Q 037121 584 KTSALPVIIGLLQ-TLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHK 660 (683)
Q Consensus 584 ~~g~i~~Lv~lL~-~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~ 660 (683)
......++..++ +. +...+..|+.+|..|+.. ..+ ..+ +..|...+...+...++.+...+..+..
T Consensus 367 -~~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~~--~Nv-~~I------v~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 367 -KTHIETVINALKTER-DVSVRQRAVDLLYAMCDR--SNA-QQI------VAEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp -HTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCH--HHH-HHH------HHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhccCC-CHhHHHHHHHHHHHHcCh--hhH-HHH------HHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 245677778787 66 788999999999999975 232 222 4567777788888888887766665543
No 135
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.96 E-value=0.0011 Score=75.59 Aligned_cols=257 Identities=9% Similarity=0.089 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhc--CCCCHHHHHHHHHHHHhhccCCch
Q 037121 375 MKLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLL--SSPDQCVQENAVAALLKLSKHTSG 452 (683)
Q Consensus 375 ~~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL--~s~d~~~q~~A~~aL~nLs~~~~~ 452 (683)
....+..+.+.|.+.++-.+.-|++.|.++.. ++ +. ...+|.+.++| .+.++-++..|+.++.++....+
T Consensus 109 ~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e----~~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p- 180 (621)
T 2vgl_A 109 IRLINNAIKNDLASRNPTFMGLALHCIANVGS--RE----MA-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP- 180 (621)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HH----HH-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HH----HH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-
Confidence 34567888899999999999888887777743 32 22 24578899999 88999999999999999986433
Q ss_pred hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhh----cC-------------
Q 037121 453 KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIE----EG------------- 515 (683)
Q Consensus 453 r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~----~~------------- 515 (683)
+.+-..+.++.+..+|.+. +..++.+|+.++..++..+.. .+ ...+|.+++.|. .+
T Consensus 181 -~~~~~~~~~~~l~~lL~d~-d~~V~~~a~~~l~~i~~~~~~--~~---~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~ 253 (621)
T 2vgl_A 181 -DLVPMGDWTSRVVHLLNDQ-HLGVVTAATSLITTLAQKNPE--EF---KTSVSLAVSRLSRIVTSASTDLQDYTYYFVP 253 (621)
T ss_dssp -GGCCCCSCHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCHH--HH---TTHHHHHHHHHHHHHHCCSSSCSTTEETTEE
T ss_pred -hhcCchhHHHHHHHHhCCC-CccHHHHHHHHHHHHHHhChH--HH---HHHHHHHHHHHHHHHhCCCCCccchhhcCCC
Confidence 2222358899999999876 889999999999999764321 11 235565555443 22
Q ss_pred CHHHHHHHHHHHHHcccCCc--hhhhHhhcCcHHHHHHHHccCC----------ChhHHHHHHHHHHHhhCChhhHHHHH
Q 037121 516 TDCGKKNAVVAIFGLLLSQG--NHQKVLDAGTVPLLADILASSN----------RTELITDSLAVLANLAEDIQGTSTIL 583 (683)
Q Consensus 516 ~~~~~~~A~~aL~nLs~~~~--n~~~iv~~g~v~~Lv~lL~~~~----------~~~~~~~al~iL~nLa~~~~~~~~i~ 583 (683)
++.++...+..|..++..++ ....+.+ .++.++..+...+ ...+..+|+.++..+...++...
T Consensus 254 ~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~--- 328 (621)
T 2vgl_A 254 APWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV--- 328 (621)
T ss_dssp SHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH---
T ss_pred CchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH---
Confidence 57888888888888876432 2333332 3444444331111 23778888888888875544333
Q ss_pred hcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHh-cCCHHHHHHHHHHHHHHH
Q 037121 584 KTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTT-DGTSQARKKARSLIKILH 659 (683)
Q Consensus 584 ~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-~g~~~~k~~A~~lL~~l~ 659 (683)
.++..|..++.+. ++..|-.|+..|..++...+. ...+.. ....++..+. +.+..+|++|..+|..+.
T Consensus 329 --~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~--~~~~~~---~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 329 --RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS--HEAVKT---HIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp --HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT--HHHHHT---THHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc--HHHHHH---HHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 3456788888776 889999999999999977531 122322 3677777777 888889999988876553
No 136
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.91 E-value=1.6e-06 Score=75.88 Aligned_cols=46 Identities=20% Similarity=0.424 Sum_probs=0.4
Q ss_pred CccCCCCcccCCCce-----------------e-ccCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 279 DFRCPISLELMTDPV-----------------T-VSTGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv-----------------~-~~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
+-.|+||++.|.+|. . .+|||.|+..||.+|+.. +.+||.|++++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 458999999998752 2 489999999999999997 789999998753
No 137
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.85 E-value=2.4e-06 Score=76.83 Aligned_cols=120 Identities=14% Similarity=0.199 Sum_probs=89.3
Q ss_pred cCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHH
Q 037121 418 SGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKL 497 (683)
Q Consensus 418 ~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~ 497 (683)
.+.++.|+.+|.++++.++..|+.+|.++... .++.|+..|.+. +..+|..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-----------~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE-----------AFEPLLESLSNE-DWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST-----------THHHHHHGGGCS-CHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-----------HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC-------
Confidence 46778899999999999999888888776421 368888999887 88999999999988752
Q ss_pred hhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHH
Q 037121 498 IGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLAN 571 (683)
Q Consensus 498 i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~n 571 (683)
..+++.|+.++.++++.++..|+++|.++. ...+++.|+.+| .+++..++..|+.+|..
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l-~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLA-ETGTGFARKVAVNYLET 130 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHT-TSCCTHHHHHHHHHGGG
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHH-hCCCHHHHHHHHHHHHh
Confidence 346889999999989999999999999875 234688899999 67788888888887764
No 138
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.85 E-value=9.3e-05 Score=73.64 Aligned_cols=184 Identities=12% Similarity=0.105 Sum_probs=136.1
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhccC-CchhhHHhhcCcHHHHHHHHc-CCCCHHHHHHHHHHHHHhccCch--hHHH
Q 037121 422 PPLLNLLSSPDQCVQENAVAALLKLSKH-TSGKKVIVESGGLKVILKVLK-SGLSLEARQIAAATLFYLTSVKG--YRKL 497 (683)
Q Consensus 422 ~~Lv~lL~s~d~~~q~~A~~aL~nLs~~-~~~r~~i~~~g~i~~Lv~lL~-~~~~~e~~~~Aa~~L~~Ls~~~~--~~~~ 497 (683)
+.+...+.+.+...+..|+..|..+... +..-..- -...++.|...+. +. +..++..|+.+|..|+..-. ....
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4588889999999999999999988754 2211000 1235777888885 66 88999999999999985321 1122
Q ss_pred hhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCC--
Q 037121 498 IGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAED-- 575 (683)
Q Consensus 498 i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~-- 575 (683)
+ ...+|.|+..+.+.++.++..|..+|.++...... ..+++.+...| .+.++.++..++..|..+...
T Consensus 96 ~---~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l-~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 96 A---SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESL-SNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp H---HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCC
T ss_pred H---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcC
Confidence 2 34789999999999999999999999999875431 13677788888 677899999999999996532
Q ss_pred hh--hHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChH
Q 037121 576 IQ--GTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNARE 620 (683)
Q Consensus 576 ~~--~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~ 620 (683)
++ ....+ . ..++.|+.++... .+.+|..|..+|..++..-+.
T Consensus 166 ~~~~~~~~l-~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 166 PTALNKKLL-K-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp GGGCCHHHH-H-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHHHCH
T ss_pred CCCccHHHH-H-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHcCH
Confidence 33 12222 2 4578899999877 899999999999998875433
No 139
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.82 E-value=4.6e-05 Score=76.52 Aligned_cols=188 Identities=11% Similarity=0.051 Sum_probs=133.5
Q ss_pred HHHhcCCCHHHHHHHHHHHHH-HHhcCchhhHHHHh-cCChHHHHhhc-CCCCHHHHHHHHHHHHhhccCCc--hhh-HH
Q 037121 383 ARRLFFGTNEEKNKAAYEIRL-LAKSNIFNRSCIVE-SGAIPPLLNLL-SSPDQCVQENAVAALLKLSKHTS--GKK-VI 456 (683)
Q Consensus 383 v~~L~s~~~~~~~~a~~~L~~-La~~~~~~r~~i~~-~G~i~~Lv~lL-~s~d~~~q~~A~~aL~nLs~~~~--~r~-~i 456 (683)
-+.+.+.+|..|.+|+..|.. +....+.....-.+ ...+..|...+ .+.+..++..|+.+|..|+..-. .-. ..
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 466789999999999999999 87543221100001 13466777888 68899999999999999984322 111 11
Q ss_pred hhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhc-cCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCc
Q 037121 457 VESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGE-TPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQG 535 (683)
Q Consensus 457 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 535 (683)
..-.++.++..+... ...+++.+..+|..++..-+. ..... -...++.|+..+++.++.++..++.+|..+.....
T Consensus 102 -~~~llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 102 -VSLVFTPLLDRTKEK-KPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp -HHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 123688888888877 788888888888888763211 11100 12467788888888899999999999999887554
Q ss_pred h----hhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC
Q 037121 536 N----HQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE 574 (683)
Q Consensus 536 n----~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~ 574 (683)
. ....+...++|.|.+++ .+.+..++..|..+|..++.
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l-~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIV-NDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 2 11233357899999999 88899999999999998764
No 140
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.79 E-value=0.00027 Score=68.31 Aligned_cols=224 Identities=19% Similarity=0.171 Sum_probs=160.7
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch--hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch-hH
Q 037121 419 GAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG--KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKG-YR 495 (683)
Q Consensus 419 G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~--r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~ 495 (683)
+.+..|+.+|+..|..++.+|+.+|.++-..-+. +..++ ...++.++.++.+. +..+.-.|+.+|..|-.+.. ..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQE-NEKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCCBCH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCCCCH
Confidence 3567899999999999999999999999876433 44444 44799999999888 88999999999998876533 22
Q ss_pred HHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCC
Q 037121 496 KLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAED 575 (683)
Q Consensus 496 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~ 575 (683)
..... .+.+|.+++.+++.-....|+-.|..|...... .+++..+..++ .+.+.+++..++.+|-++++.
T Consensus 111 ~~y~K---l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 111 KTFLK---AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELV-VSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHHH---HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGG
T ss_pred HHHHH---HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcc
Confidence 33322 567899999999999999999999999322211 23566788889 888999999999999999863
Q ss_pred hhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCC-hHHHHHHHhcCCCcHHHHHHhH-hcCCHHHHHHHHH
Q 037121 576 IQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNA-REEVTASLAKDPSLMNSLYSLT-TDGTSQARKKARS 653 (683)
Q Consensus 576 ~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~-~~~~~~~l~~~~g~i~~L~~Ll-~~g~~~~k~~A~~ 653 (683)
.+... + -.+.+.-+-.+|++. ++..++.|+.+|..+.+.. .++....+. ++....-.+. ..|.|..+.+|..
T Consensus 181 S~D~~-i-~~~I~~eI~elL~~e-D~~l~e~aLd~Le~ils~pi~~~~~~~~~---~~~~~v~~l~~~~~~~~~~~ka~~ 254 (265)
T 3b2a_A 181 SADSG-H-LTLILDEIPSLLQND-NEFIVELALDVLEKALSFPLLENVKIELL---KISRIVDGLVYREGAPIIRLKAKK 254 (265)
T ss_dssp CSSCC-C-GGGTTTTHHHHHTCS-CHHHHHHHHHHHHHHTTSCCCSCCHHHHH---HHHHHHHHGGGCSSCHHHHHHHHH
T ss_pred cCCHH-H-HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCcccHhHHHHHH---HHHHHHHHHHHhcCChhHHHHHHH
Confidence 21111 0 113455666788888 9999999999999988763 112222222 1122222333 5789999999887
Q ss_pred HHHHHHH
Q 037121 654 LIKILHK 660 (683)
Q Consensus 654 lL~~l~~ 660 (683)
....+..
T Consensus 255 v~~~le~ 261 (265)
T 3b2a_A 255 VSDLIDS 261 (265)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665543
No 141
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.77 E-value=3e-06 Score=76.16 Aligned_cols=119 Identities=20% Similarity=0.148 Sum_probs=91.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIV 457 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~ 457 (683)
.++.|+..|.+.++.++..|++.|..+.. ..++.|+.+|.++++.++..|+++|+++..
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------- 71 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------- 71 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS---------
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC---------
Confidence 45677888888888888888866654321 136999999999999999999999999862
Q ss_pred hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHc
Q 037121 458 ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGL 530 (683)
Q Consensus 458 ~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 530 (683)
.++++.|+..|.++ +..+|..|+++|..+.. ..+++.|+.++.+.++.++..|+.+|.++
T Consensus 72 -~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 -ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 34689999999887 88999999999998852 35789999999988999999999998654
No 142
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.77 E-value=0.00063 Score=73.25 Aligned_cols=232 Identities=15% Similarity=0.062 Sum_probs=160.1
Q ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHHhcCchhhHHHHhcC--ChHHHHhhcCC---------------C--CHHHHHHHH
Q 037121 381 FLARRLFFG-TNEEKNKAAYEIRLLAKSNIFNRSCIVESG--AIPPLLNLLSS---------------P--DQCVQENAV 440 (683)
Q Consensus 381 ~Lv~~L~s~-~~~~~~~a~~~L~~La~~~~~~r~~i~~~G--~i~~Lv~lL~s---------------~--d~~~q~~A~ 440 (683)
.++..|.+. +.+.+.-++..|..+.. .+++|..+.+.+ .+|+++.++.. + ...+|-+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 566677663 45667778888888887 578898887653 47777654431 1 356789999
Q ss_pred HHHHhhccCCchhhHHhhcCcH--HHHHHHHcCCCCHHHHHHHHHHHHHhccCc--h---hHH-HhhccCCChHHHHHhh
Q 037121 441 AALLKLSKHTSGKKVIVESGGL--KVILKVLKSGLSLEARQIAAATLFYLTSVK--G---YRK-LIGETPKAIPALVKLI 512 (683)
Q Consensus 441 ~aL~nLs~~~~~r~~i~~~g~i--~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~--~---~~~-~i~~~~g~i~~Lv~lL 512 (683)
-++.-|+.+++..+.+...+.. ..|+.+++......+.+-+.++|.||.... + ... .+.. .++ +.++..|
T Consensus 250 l~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~-~~~-l~~l~~L 327 (480)
T 1ho8_A 250 LLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLL-GNA-LPTVQSL 327 (480)
T ss_dssp HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHH-HCH-HHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHH-ccc-hHHHHHH
Confidence 9999999998877777766643 677788887657889999999999998754 1 112 2222 233 5566666
Q ss_pred hc---CCHHHHHHHHHH-------HHHcccCC------------------------chhhhHhhc--CcHHHHHHHHcc-
Q 037121 513 EE---GTDCGKKNAVVA-------IFGLLLSQ------------------------GNHQKVLDA--GTVPLLADILAS- 555 (683)
Q Consensus 513 ~~---~~~~~~~~A~~a-------L~nLs~~~------------------------~n~~~iv~~--g~v~~Lv~lL~~- 555 (683)
.. .|++..++.-.. ...+++.+ +|..++-+. ..+..|+++|.+
T Consensus 328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 (480)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence 54 345444433222 22222111 233344433 367889999953
Q ss_pred --------CCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 037121 556 --------SNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCS 616 (683)
Q Consensus 556 --------~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~ 616 (683)
+.++.+..-|+.=|+.++. .|.||..+-+.|+=..++++|.+. ++.+|.+|+.++..+..
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 2356777778888888886 899999999988888889999998 99999999998876654
No 143
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.59 E-value=0.0025 Score=74.41 Aligned_cols=235 Identities=14% Similarity=0.100 Sum_probs=159.1
Q ss_pred HHHHHHHhcCCC--------HHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCC
Q 037121 379 SRFLARRLFFGT--------NEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHT 450 (683)
Q Consensus 379 i~~Lv~~L~s~~--------~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~ 450 (683)
+..|...|.+.+ +.++..|+-.|....-... + ..+++.|..+|.+++..+.+.|+-+|+.+-...
T Consensus 431 ~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~-~------eev~e~L~~~L~dd~~~~~~~AalALGli~vGT 503 (963)
T 4ady_A 431 TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA-N------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGT 503 (963)
T ss_dssp HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC-C------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC-C------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc
Confidence 455555554433 4456666666665543211 1 124677888888877777777777777663332
Q ss_pred chhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhc-CCHHHHHHHHHHHHH
Q 037121 451 SGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEE-GTDCGKKNAVVAIFG 529 (683)
Q Consensus 451 ~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~n 529 (683)
.|. .++..|+..+.+..+..+++.++-.|..+.... ...++.+++.|.. .++-++..++.++.-
T Consensus 504 gn~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~---------~e~~~~li~~L~~~~dp~vRygaa~algl 568 (963)
T 4ady_A 504 GKP------EAIHDMFTYSQETQHGNITRGLAVGLALINYGR---------QELADDLITKMLASDESLLRYGGAFTIAL 568 (963)
T ss_dssp CCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC---------GGGGHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCH------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC---------hHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 222 245667776655447788888888888775432 5678888888765 566777777777776
Q ss_pred cccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhh-ccCCChHHHHHHH
Q 037121 530 LLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLL-QTLTSRAGKEYCV 608 (683)
Q Consensus 530 Ls~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL-~~~~s~~~ke~A~ 608 (683)
-....+|.. +|+.|++.+.++.++.++..|+..|+.++.... ..++.++.+| +++ ++.+|..|.
T Consensus 569 AyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~-d~~VR~gAa 633 (963)
T 4ady_A 569 AYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSH-NAHVRCGTA 633 (963)
T ss_dssp HTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCS-CHHHHHHHH
T ss_pred HhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcC-CHHHHHHHH
Confidence 666666643 466788887677788999999999998864321 3467777744 555 899999999
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHH
Q 037121 609 SILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILH 659 (683)
Q Consensus 609 ~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~ 659 (683)
.+|..+|.+++.. .++..|..++++.++.+++.|...|.++-
T Consensus 634 lALGli~aGn~~~---------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 634 FALGIACAGKGLQ---------SAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHHHHHTSSSCCH---------HHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred HHHHHhccCCCcH---------HHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 9999999875421 12556777888889999988887777654
No 144
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.57 E-value=0.0014 Score=67.28 Aligned_cols=155 Identities=15% Similarity=0.109 Sum_probs=123.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIV 457 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~ 457 (683)
.+..+++.|.+++.+.++.++..|+.+-..+...-..|++.+++..|+......+.+.|..++++|.+|-.+..+-..++
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence 56677888888999999999999998443466667778888889999999999999999999999999998888877777
Q ss_pred -hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch-hHHHhhc---------cCCChHHHHHhhh---cCCHHHHHHH
Q 037121 458 -ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKG-YRKLIGE---------TPKAIPALVKLIE---EGTDCGKKNA 523 (683)
Q Consensus 458 -~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~---------~~g~i~~Lv~lL~---~~~~~~~~~A 523 (683)
....|.-+..++.+. ...+.+.|..+|..++...+ +...+.. ..-.++.|+.+|. +++.+.+..|
T Consensus 199 s~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 199 AHSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 666888899999875 78899999999999987654 2222111 1224789999997 6788888888
Q ss_pred HHHHHHcccC
Q 037121 524 VVAIFGLLLS 533 (683)
Q Consensus 524 ~~aL~nLs~~ 533 (683)
+..+-.+...
T Consensus 278 mtLIN~lL~~ 287 (339)
T 3dad_A 278 VTLINKTLAA 287 (339)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8876655543
No 145
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.53 E-value=0.002 Score=66.14 Aligned_cols=151 Identities=12% Similarity=0.138 Sum_probs=119.6
Q ss_pred HHHhhhcCCHHHHHHHHHHHHH-cccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcC
Q 037121 508 LVKLIEEGTDCGKKNAVVAIFG-LLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTS 586 (683)
Q Consensus 508 Lv~lL~~~~~~~~~~A~~aL~n-Ls~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g 586 (683)
+++-|.+++.+.++.++.-|.. ++.+.+....++..+++..|+.++ ...+...+..++.+|.+|.....|...+++..
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi-~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~ 201 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVG-AAADHNYQSYILRALGQLMLFVDGMLGVVAHS 201 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHH-TTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHH-HhcChHHHHHHHHHHHHHHhccccccchhCCH
Confidence 3344556678888888888888 666777899999999999999999 66799999999999999999999998888655
Q ss_pred -ChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHH---HHHH---hc--CCCcHHHHHHhHh---cCCHHHHHHHHHH
Q 037121 587 -ALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEV---TASL---AK--DPSLMNSLYSLTT---DGTSQARKKARSL 654 (683)
Q Consensus 587 -~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~---~~~l---~~--~~g~i~~L~~Ll~---~g~~~~k~~A~~l 654 (683)
.|..++.++.+. ...+...|+++|..+|..+.... .+.+ .. +.-..+.|+.+++ .++..++..|..|
T Consensus 202 ~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 202 DTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 489999999875 78899999999999998763221 1111 11 1124778999998 7899999999998
Q ss_pred HH-HHHH
Q 037121 655 IK-ILHK 660 (683)
Q Consensus 655 L~-~l~~ 660 (683)
+. .|..
T Consensus 281 IN~lL~~ 287 (339)
T 3dad_A 281 INKTLAA 287 (339)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 87 4444
No 146
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.39 E-value=0.0073 Score=71.29 Aligned_cols=266 Identities=15% Similarity=0.148 Sum_probs=180.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCch---hhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccC-Cchh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIF---NRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKH-TSGK 453 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~---~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~-~~~r 453 (683)
.+..|.+.+...... ..|+..+..++..... .-..+. +.+|.++..+.+.+..++..|..++..+... +.+.
T Consensus 55 ~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a 130 (986)
T 2iw3_A 55 FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA 130 (986)
T ss_dssp HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 455666666554333 7788888888854421 122232 6889999999988899999888777766532 2221
Q ss_pred hHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhc-cCCChHHHHHhhhcCCHHHHHHHHHHHHHccc
Q 037121 454 KVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGE-TPKAIPALVKLIEEGTDCGKKNAVVAIFGLLL 532 (683)
Q Consensus 454 ~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 532 (683)
+ ..+++.|+..|.++..+..+..|..++..|+.... ..++. -+..||.+.+.+-+..+++++.|..++..+|.
T Consensus 131 --~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 131 --I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK--DQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATE 204 (986)
T ss_dssp --H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH--HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGG
T ss_pred --H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH--HHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHh
Confidence 1 45689999999876468999999999999986432 22221 25678888888777788999999999999988
Q ss_pred CCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHH
Q 037121 533 SQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILL 612 (683)
Q Consensus 533 ~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~ 612 (683)
.-+|+.. ...+|.|++.+ .++ +-+.+++..|..-....+....-+. =.+|.|.+=|... +...+..++-+.-
T Consensus 205 ~~~n~d~---~~~~~~~~~~~-~~p--~~~~~~~~~l~~~tfv~~v~~~~l~-~~~p~l~r~l~~~-~~~~~r~~~~~~~ 276 (986)
T 2iw3_A 205 TVDNKDI---ERFIPSLIQCI-ADP--TEVPETVHLLGATTFVAEVTPATLS-IMVPLLSRGLNER-ETGIKRKSAVIID 276 (986)
T ss_dssp GCCCTTT---GGGHHHHHHHH-HCT--THHHHHHHHHTTCCCCSCCCHHHHH-HHHHHHHHHHTSS-SHHHHHHHHHHHH
T ss_pred cCCCcch---hhhHHHHHHHh-cCh--hhhHHHHHHhhcCeeEeeecchhHH-HHHHHHHhhhccC-cchhheeeEEEEc
Confidence 7666543 24789999999 444 4456666666544322221111110 0146666666665 7788888999999
Q ss_pred HHhcC--ChHHHHHHHhcCCCcHHHHHHhHhc-CCHHHHHHHHHHHHHHHHhhhh
Q 037121 613 SLCSN--AREEVTASLAKDPSLMNSLYSLTTD-GTSQARKKARSLIKILHKFIET 664 (683)
Q Consensus 613 ~L~~~--~~~~~~~~l~~~~g~i~~L~~Ll~~-g~~~~k~~A~~lL~~l~~~~~~ 664 (683)
|||.- ++..+..-+ +.++|.|-..... .+|++|+.|..++..|.+....
T Consensus 277 n~~~lv~~~~~~~~f~---~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 277 NMCKLVEDPQVIAPFL---GKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHTTCCCHHHHHHHH---TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred chhhhcCCHHHHhhhh---hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 99985 334444433 5678888776554 5999999999999999887543
No 147
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.0021 Score=64.31 Aligned_cols=191 Identities=10% Similarity=0.072 Sum_probs=130.8
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHH-hccC-chhHHHhhccCCChHHHHHhh-hcCCHHHHHHHHHHHHHcccCCc--hhh-
Q 037121 465 ILKVLKSGLSLEARQIAAATLFY-LTSV-KGYRKLIGETPKAIPALVKLI-EEGTDCGKKNAVVAIFGLLLSQG--NHQ- 538 (683)
Q Consensus 465 Lv~lL~~~~~~e~~~~Aa~~L~~-Ls~~-~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~~~~--n~~- 538 (683)
+...+.+. ++..|..|+..|.. +... .............+..|...+ ++.+..++..|+.+|..|+..-. ...
T Consensus 21 f~~~l~s~-~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERITSS-KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHTCS-SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhhcC-CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34456666 88999999999988 7642 111000111123567778888 67788899999999999986432 111
Q ss_pred hHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHH--hcCChHHHHHhhccCCChHHHHHHHHHHHHHhc
Q 037121 539 KVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTIL--KTSALPVIIGLLQTLTSRAGKEYCVSILLSLCS 616 (683)
Q Consensus 539 ~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~--~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~ 616 (683)
... .-+++.++..+ .+..+.+++.+..+|..++..-.- .... =...++.|...|++. .+.+|+.++.+|..++.
T Consensus 100 ~y~-~~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 100 DYV-SLVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHH-HHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHH
Confidence 122 23788899998 667788989988888888752100 0000 001356778888887 89999999999998887
Q ss_pred CCh---HHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhh
Q 037121 617 NAR---EEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFI 662 (683)
Q Consensus 617 ~~~---~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~ 662 (683)
..+ ......+. ..++|.|..++.+.++.+|..|...+..+.+.-
T Consensus 176 ~~~~~~~~l~~~l~--~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v 222 (249)
T 2qk1_A 176 EEKDGYSTLQRYLK--DEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF 222 (249)
T ss_dssp HCCSCSHHHHHHHT--TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HcCCcchhHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 654 23333331 357999999999999999999999888776654
No 148
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.15 E-value=0.00041 Score=55.17 Aligned_cols=48 Identities=15% Similarity=0.309 Sum_probs=38.8
Q ss_pred CccCCCCcccCCCcee-ccCcccccHHHHHHHHHhC-CCCCCCCCcccCC
Q 037121 279 DFRCPISLELMTDPVT-VSTGQTYDRSSIQKWLKAG-NMLCPKTGEKLTN 326 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv~-~~cght~~r~cI~~w~~~~-~~~CP~c~~~l~~ 326 (683)
-..|+||.+++..-.. ..|||.|-..||.+||+.. ..+||.|+.....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 4579999999875443 3799999999999999872 3799999987653
No 149
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.09 E-value=0.0006 Score=51.98 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=39.7
Q ss_pred CCccCCCCcccCCCceeccCc--c---cccHHHHHHHHHh-CCCCCCCCCcccC
Q 037121 278 EDFRCPISLELMTDPVTVSTG--Q---TYDRSSIQKWLKA-GNMLCPKTGEKLT 325 (683)
Q Consensus 278 ~~f~CpIc~~~m~dPv~~~cg--h---t~~r~cI~~w~~~-~~~~CP~c~~~l~ 325 (683)
+.-.|.||++-..+|.+.||. + .|-+.|+.+|+.. ++.+||.|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 456799999888888878865 3 7899999999985 6789999998765
No 150
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.09 E-value=0.18 Score=46.87 Aligned_cols=214 Identities=14% Similarity=0.100 Sum_probs=144.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhc-CCCCHHHHHHHHHHHHhhccCCchhh
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLL-SSPDQCVQENAVAALLKLSKHTSGKK 454 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL-~s~d~~~q~~A~~aL~nLs~~~~~r~ 454 (683)
+..+..++..|...-|-+|..|+..|-.+++.-++....+ +..|+-++ ++...........+++.++...+.
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe-- 103 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE-- 103 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH--
Confidence 4467889999999899999999999999998776654443 24455555 456666656667888888743221
Q ss_pred HHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCC
Q 037121 455 VIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ 534 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 534 (683)
++ .+.++.+..-..-| ++..+.+...+|..++.. |...+ .+++.-+..++.+.+..-+..|+..+ ..-.
T Consensus 104 -~v-~~vVp~lfanyrig-d~kikIn~~yaLeeIara--nP~l~---~~v~rdi~smltskd~~Dkl~aLnFi---~alG 172 (253)
T 2db0_A 104 -LV-KSMIPVLFANYRIG-DEKTKINVSYALEEIAKA--NPMLM---ASIVRDFMSMLSSKNREDKLTALNFI---EAMG 172 (253)
T ss_dssp -HH-HHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHH--CHHHH---HHHHHHHHHHTSCSSHHHHHHHHHHH---HTCC
T ss_pred -HH-HhhHHHHHHHHhcC-CccceecHHHHHHHHHHh--ChHHH---HHHHHHHHHHhcCCChHHHHHHHHHH---HHHh
Confidence 11 22455555555568 899999999999998763 22222 23566778888877755554444444 4445
Q ss_pred chhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHH
Q 037121 535 GNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE-DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLS 613 (683)
Q Consensus 535 ~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~ 613 (683)
+|..+-+. ..+|.|..+| .+.+.-++..|+..|.+|+. ++..|..+. ..++-+... |..++......|..
T Consensus 173 en~~~yv~-PfLprL~aLL-~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~-S~lv~~~V~egL~r 243 (253)
T 2db0_A 173 ENSFKYVN-PFLPRIINLL-HDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDT-SSLVNKTVKEGISR 243 (253)
T ss_dssp TTTHHHHG-GGHHHHHGGG-GCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCS-CHHHHHHHHHHHHH
T ss_pred ccCccccC-cchHHHHHHH-cCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCc-HHHHHHHHHHHHHH
Confidence 56555443 4789999999 88888999999999999996 666555443 233334444 66666666666655
Q ss_pred Hhc
Q 037121 614 LCS 616 (683)
Q Consensus 614 L~~ 616 (683)
+..
T Consensus 244 l~l 246 (253)
T 2db0_A 244 LLL 246 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 151
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.92 E-value=0.11 Score=48.30 Aligned_cols=213 Identities=20% Similarity=0.187 Sum_probs=145.6
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHh
Q 037121 419 GAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLI 498 (683)
Q Consensus 419 G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i 498 (683)
.++..++.+|.++--.+|.||+..+.+++..-+. .. ...+..|+.+++......+....+.++.-++... ..+
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e---l~-epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~---Pe~ 104 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED---LY-EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK---PEL 104 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG---GH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC---HHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH---HH-HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC---HHH
Confidence 4567889999888889999999999999865322 11 2235556667666547777777778888777532 222
Q ss_pred hccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhh
Q 037121 499 GETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQG 578 (683)
Q Consensus 499 ~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~ 578 (683)
. .+.+|.|..-..-+++..+.+...+|..++.....- -.+++.-+..++ ++++..=.-.|+..+..+..+.
T Consensus 105 v--~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l----~~~v~rdi~sml-tskd~~Dkl~aLnFi~alGen~-- 175 (253)
T 2db0_A 105 V--KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPML----MASIVRDFMSML-SSKNREDKLTALNFIEAMGENS-- 175 (253)
T ss_dssp H--HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHT-SCSSHHHHHHHHHHHHTCCTTT--
T ss_pred H--HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH----HHHHHHHHHHHh-cCCChHHHHHHHHHHHHHhccC--
Confidence 2 246777777777799999999999999887643221 123566688888 6666555556666666665431
Q ss_pred HHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHH
Q 037121 579 TSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKIL 658 (683)
Q Consensus 579 ~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l 658 (683)
-.. -...+|.|..+|..+ +..++-.|+.+|.+++.-++ ...+.+. .-++=+.+.++-++.+....|..+
T Consensus 176 ~~y--v~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~np-klRkii~-------~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 176 FKY--VNPFLPRIINLLHDG-DEIVRASAVEALVHLATLND-KLRKVVI-------KRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp HHH--HGGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCH-HHHHHHH-------HHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred ccc--cCcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCH-HHHHHHH-------HHHHHhcCcHHHHHHHHHHHHHHH
Confidence 111 236789999999998 89999999999999999874 3555443 223334556666666665555544
No 152
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.91 E-value=0.003 Score=66.26 Aligned_cols=240 Identities=12% Similarity=0.076 Sum_probs=130.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHH
Q 037121 377 LMSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVI 456 (683)
Q Consensus 377 ~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i 456 (683)
+.+..|.+.+.++++-.+-.|++.|..+... +.-. ...+.+-+.|.+.++-++..|+-+...|....+. +
T Consensus 104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~ 173 (355)
T 3tjz_B 104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---V 173 (355)
T ss_dssp GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---H
T ss_pred HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---H
Confidence 3567888999999998888888777776542 2111 2456778888999999999999999988755433 2
Q ss_pred hhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcC---CHHHHHHHHHHHHHcccC
Q 037121 457 VESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEG---TDCGKKNAVVAIFGLLLS 533 (683)
Q Consensus 457 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~A~~aL~nLs~~ 533 (683)
+ .+.++.+-+++.+. +..+..+|.++|..+...+. .++..|+.-+..+ ++.++-.-+..+..++..
T Consensus 174 v-~~~~~~l~~ll~d~-n~~V~~~Al~lL~ei~~~d~---------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~ 242 (355)
T 3tjz_B 174 V-KRWVNEAQEAASSD-NIMVQYHALGLLYHVRKNDR---------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLED 242 (355)
T ss_dssp H-HTTHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---
T ss_pred H-HHHHHHHHHHhcCC-CccHHHHHHHHHHHHHhhch---------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccc
Confidence 2 36888999999887 88888999999999986541 1344455555443 355555555555455443
Q ss_pred CchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHH
Q 037121 534 QGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLS 613 (683)
Q Consensus 534 ~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~ 613 (683)
++. -.....++.+...| .+.++.+.-+|+.++..+...+. .+. ..++..|..++.+. ++..|-.|+..|..
T Consensus 243 d~~---~~~~~~~~~l~~~L-~~~~~aVvyEa~k~I~~l~~~~~---~~~-~~a~~~L~~fLss~-d~niryvaLr~L~~ 313 (355)
T 3tjz_B 243 EDG---SRDSPLFDFIESCL-RNKHEMVVYEAASAIVNLPGCSA---KEL-APAVSVLQLFCSSP-KAALRYAAVRTLNK 313 (355)
T ss_dssp -----------------CCC-CCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSS-SSSSHHHHHHCC--
T ss_pred cch---hhHHHHHHHHHHHH-cCCChHHHHHHHHHHHhccCCCH---HHH-HHHHHHHHHHHcCC-CchHHHHHHHHHHH
Confidence 310 12234566677777 67788999999999988865322 121 34567777788876 88899999999888
Q ss_pred HhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHH
Q 037121 614 LCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARS 653 (683)
Q Consensus 614 L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~ 653 (683)
+....+.- ... .-.-+.+++.+++-.+...|..
T Consensus 314 l~~~~P~~-v~~------~n~~ie~li~d~n~sI~t~Ait 346 (355)
T 3tjz_B 314 VAMKHPSA-VTA------CNLDLENLVTDANRSIATLAIT 346 (355)
T ss_dssp ----------------------------------------
T ss_pred HHHHCcHH-HHH------HHHHHHHHccCCcHhHHHHHHH
Confidence 77764322 221 1344566777777666655543
No 153
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.86 E-value=0.00085 Score=55.62 Aligned_cols=45 Identities=11% Similarity=0.143 Sum_probs=38.0
Q ss_pred cCCCCcccCCCce-eccCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 281 RCPISLELMTDPV-TVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 281 ~CpIc~~~m~dPv-~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
.|++|.-.+..-. ++||+|.||..|+..|...+..+||.|+.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 5888887775443 67999999999999999888899999998764
No 154
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.82 E-value=0.033 Score=65.17 Aligned_cols=242 Identities=16% Similarity=0.118 Sum_probs=148.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhc-CCCCHHHHHHHHHHHHhhccCCchhhHH
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLL-SSPDQCVQENAVAALLKLSKHTSGKKVI 456 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL-~s~d~~~q~~A~~aL~nLs~~~~~r~~i 456 (683)
.+..|...|...+...+..|+..|..+.-... |. .++..|++.+ ...+..++..++..|+.+...
T Consensus 473 v~e~L~~~L~dd~~~~~~~AalALGli~vGTg-n~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g------- 538 (963)
T 4ady_A 473 VYEALKEVLYNDSATSGEAAALGMGLCMLGTG-KP------EAIHDMFTYSQETQHGNITRGLAVGLALINYG------- 538 (963)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC-CH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC-CH------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC-------
Confidence 34555555555554444455555554432111 11 1234555543 345667777788888776533
Q ss_pred hhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhh-cCCHHHHHHHHHHHHHcccCCc
Q 037121 457 VESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIE-EGTDCGKKNAVVAIFGLLLSQG 535 (683)
Q Consensus 457 ~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~ 535 (683)
+...++.++..|....++-+|..++.++.--.....+. .+|..|++.+. +.+..++..|+.+|..+...+.
T Consensus 539 -~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 539 -RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp -CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC
T ss_pred -ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH
Confidence 34567888888887547777777766665444433333 24565666554 4467788999999998876553
Q ss_pred hhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHh
Q 037121 536 NHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLC 615 (683)
Q Consensus 536 n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~ 615 (683)
..++.++.+|..+.++.++..|..+|+.++..... . .++..|..++... +..++.+|+.+|..+.
T Consensus 611 --------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~-----~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 611 --------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-Q-----SAIDVLDPLTKDP-VDFVRQAAMIALSMIL 675 (963)
T ss_dssp --------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-H-----HHHHHHHHHHTCS-SHHHHHHHHHHHHHHS
T ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-H-----HHHHHHHHHccCC-CHHHHHHHHHHHHHHh
Confidence 35777888775778899999999999999753221 1 2345666677766 8899999999999888
Q ss_pred cCChHHHHHHHhcCCCcHHHHHHhHhc--CCHHHHHHHHHHHHHHH
Q 037121 616 SNAREEVTASLAKDPSLMNSLYSLTTD--GTSQARKKARSLIKILH 659 (683)
Q Consensus 616 ~~~~~~~~~~l~~~~g~i~~L~~Ll~~--g~~~~k~~A~~lL~~l~ 659 (683)
.+.++.....+. ++...|.....+ .++.++-.|.-+.-++.
T Consensus 676 ~gtnna~~~rva---~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 676 IQQTEKLNPQVA---DINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp TTCCTTTCTTHH---HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred cCCccccchHHH---HHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 765433111111 124445666654 35556655555554444
No 155
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.73 E-value=0.22 Score=53.60 Aligned_cols=197 Identities=13% Similarity=0.082 Sum_probs=125.3
Q ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcCch--hhH-HHHhcCCh-H-HHHhhcCCCCHHHHHHHHHHHHhhccCCc
Q 037121 378 MSRFLARRLFF-GTNEEKNKAAYEIRLLAKSNIF--NRS-CIVESGAI-P-PLLNLLSSPDQCVQENAVAALLKLSKHTS 451 (683)
Q Consensus 378 ~i~~Lv~~L~s-~~~~~~~~a~~~L~~La~~~~~--~r~-~i~~~G~i-~-~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~ 451 (683)
.+..++..|+. .+.+.....+.-+..+...++. .+. .+.+.... . ++-.++..++.-.+..|..++..++....
T Consensus 78 ~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~ 157 (480)
T 1ho8_A 78 TLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGL 157 (480)
T ss_dssp THHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccCC
Confidence 45667777764 4677777888777777776651 333 33333322 1 23334444556666666666555542221
Q ss_pred hhhHHhhcCcHH--HHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCC-ChHHHHHhhhcC-------------
Q 037121 452 GKKVIVESGGLK--VILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPK-AIPALVKLIEEG------------- 515 (683)
Q Consensus 452 ~r~~i~~~g~i~--~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g-~i~~Lv~lL~~~------------- 515 (683)
.-... -.+.+. -++..|.+..+......++..|..|...+++|..+....| .+|.++.++...
T Consensus 158 ~~~~~-l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~ 236 (480)
T 1ho8_A 158 HNVKL-VEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATN 236 (480)
T ss_dssp CCHHH-HHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-----------
T ss_pred ccHhH-HHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcccccccccccc
Confidence 11111 111222 3555566532455566789999999999999998876333 477776654421
Q ss_pred ----CHHHHHHHHHHHHHcccCCchhhhHhhcCcH--HHHHHHHccCCChhHHHHHHHHHHHhhCC
Q 037121 516 ----TDCGKKNAVVAIFGLLLSQGNHQKVLDAGTV--PLLADILASSNRTELITDSLAVLANLAED 575 (683)
Q Consensus 516 ----~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v--~~Lv~lL~~~~~~~~~~~al~iL~nLa~~ 575 (683)
....+-.++-+++-|+.+++....+...++. +.|+.+++......+..-++++|.||...
T Consensus 237 ~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~ 302 (480)
T 1ho8_A 237 SNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCST 302 (480)
T ss_dssp --CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSS
T ss_pred CCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcc
Confidence 1344668899999999998888888877754 67888887677889999999999999764
No 156
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.048 Score=55.06 Aligned_cols=185 Identities=11% Similarity=0.138 Sum_probs=122.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcCchhh--HH-HHhc-CChHHHHhhcCCCCHHHHHHHHHHHHhhccCCc---h-h
Q 037121 382 LARRLFFGTNEEKNKAAYEIRLLAKSNIFNR--SC-IVES-GAIPPLLNLLSSPDQCVQENAVAALLKLSKHTS---G-K 453 (683)
Q Consensus 382 Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r--~~-i~~~-G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~---~-r 453 (683)
|-++|.+.+|..|.+|+..|..+....+... .. +..- ..++.+-..+.+.|..++..++.+|..+...-. . +
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 4578999999999999999988776432211 11 1112 345566778889999999999999988764321 1 1
Q ss_pred h--HHhhcCcHHHHHHH-HcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHc
Q 037121 454 K--VIVESGGLKVILKV-LKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGL 530 (683)
Q Consensus 454 ~--~i~~~g~i~~Lv~l-L~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 530 (683)
. ...-...++.|+.= |.++ ...++..|..++..++...... ..+++.++..+.+.++.++..++..|..+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~-k~~~~~~a~~~l~~~~~~~~~~------~~~~e~l~~~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSS-RATTKTQSMSCILSLCGLDTSI------TQSVELVIPFFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHTSSSS------HHHHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 1 12234456777753 5666 6788888888887775432211 12356677778889999999999999887
Q ss_pred ccCCchh---hhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC
Q 037121 531 LLSQGNH---QKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE 574 (683)
Q Consensus 531 s~~~~n~---~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~ 574 (683)
...-+.. ....-..+++.+..+| .+.++.++..|..++..+-.
T Consensus 167 l~~fg~~~~~~k~~l~~i~~~l~k~l-~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 167 MAAFGLTNVNVQTFLPELLKHVPQLA-GHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHTTTTCCHHHHHHHHGGGHHHHH-TCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCcCCchhHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHH
Confidence 6542211 1111113556677788 88899999999999987764
No 157
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.56 E-value=0.0014 Score=66.92 Aligned_cols=48 Identities=25% Similarity=0.524 Sum_probs=38.3
Q ss_pred CCccCCCCcccCCC----cee----ccCcccccHHHHHHHHHhC-C---------CCCCCCCcccC
Q 037121 278 EDFRCPISLELMTD----PVT----VSTGQTYDRSSIQKWLKAG-N---------MLCPKTGEKLT 325 (683)
Q Consensus 278 ~~f~CpIc~~~m~d----Pv~----~~cght~~r~cI~~w~~~~-~---------~~CP~c~~~l~ 325 (683)
....|+||...+.+ |.. ..|||.|-..|+.+||.+. . ..||.|+++++
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 35679999999876 432 3699999999999999862 1 47999999875
No 158
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.25 E-value=0.15 Score=53.38 Aligned_cols=137 Identities=16% Similarity=0.089 Sum_probs=105.6
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhc
Q 037121 421 IPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGE 500 (683)
Q Consensus 421 i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~ 500 (683)
.+..++++.++|...+.-..-.+.+++..++. .| =++..|.+=+.++ ++-.|..|..+|.++...+- .
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e--~i---Lv~Nsl~kDl~~~-N~~iR~lALRtL~~I~~~~m-----~- 137 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED--VI---IVTSSLTKDMTGK-EDSYRGPAVRALCQITDSTM-----L- 137 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC--GG---GGHHHHHHHHHSS-CHHHHHHHHHHHHHHCCTTT-----H-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH--HH---HHHHHHHhhcCCC-cHhHHHHHHHHHhcCCCHHH-----H-
Confidence 35678899999999999888888888876322 22 2567777777777 88999999999999976431 1
Q ss_pred cCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCC
Q 037121 501 TPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAED 575 (683)
Q Consensus 501 ~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~ 575 (683)
....+.+...|.+.++-+++.|+.+.+.|...... +++ +.++.+-+++ .+.++.++..|+++|..+...
T Consensus 138 -~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v~-~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 138 -QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VVK-RWVNEAQEAA-SSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HHH-TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HHH-HHHHHHHHHh-cCCCccHHHHHHHHHHHHHhh
Confidence 12455666777888999999999999999765433 333 6888999999 778899999999999999864
No 159
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.98 E-value=0.24 Score=58.51 Aligned_cols=221 Identities=17% Similarity=0.166 Sum_probs=146.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCC-CHHHHHHHHHHHHhhccCCchhhHH
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSP-DQCVQENAVAALLKLSKHTSGKKVI 456 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~-d~~~q~~A~~aL~nLs~~~~~r~~i 456 (683)
.++.++..+......++..|-..+..+.+.-+.+.. ..++|.|+..|.+. .-..+..|+.++..|+... ...+
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~ 169 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQV 169 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHH
Confidence 456666777777778888888788877764333221 34679999988654 6788999999999998654 3333
Q ss_pred h--hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCC
Q 037121 457 V--ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ 534 (683)
Q Consensus 457 ~--~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 534 (683)
. -...||.+...+-.. ..+++..|..++..+|..-+|+.. ...||.|++.+.+++. .-.+...|..-....
T Consensus 170 ~~~~~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~----~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~ 242 (986)
T 2iw3_A 170 ALRMPELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI----ERFIPSLIQCIADPTE--VPETVHLLGATTFVA 242 (986)
T ss_dssp HHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT----GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCS
T ss_pred HHhccchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch----hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEe
Confidence 3 345677777777766 789999999999999876555543 3579999999987643 333333333222222
Q ss_pred chhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC---ChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHH
Q 037121 535 GNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE---DIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSIL 611 (683)
Q Consensus 535 ~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~---~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L 611 (683)
+.-.-... =.+|.|.+-| ......+...++-++.|+|. +|.....++- ..+|.+-+..+.-..|+.|+.|..++
T Consensus 243 ~v~~~~l~-~~~p~l~r~l-~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r~~~~~a~ 319 (986)
T 2iw3_A 243 EVTPATLS-IMVPLLSRGL-NERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAREVTLRAL 319 (986)
T ss_dssp CCCHHHHH-HHHHHHHHHH-TSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHHHHHHHHH
T ss_pred eecchhHH-HHHHHHHhhh-ccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHHHHHHHHH
Confidence 21111110 1344455555 45677888999999999995 4444444442 34677777776655899999988887
Q ss_pred HHH
Q 037121 612 LSL 614 (683)
Q Consensus 612 ~~L 614 (683)
..|
T Consensus 320 ~~l 322 (986)
T 2iw3_A 320 KTL 322 (986)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
No 160
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.97 E-value=0.37 Score=47.30 Aligned_cols=232 Identities=14% Similarity=0.142 Sum_probs=152.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHh-cCChHHHHh-------hcCCCC-----HHHHHHHHHHHH
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVE-SGAIPPLLN-------LLSSPD-----QCVQENAVAALL 444 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~-~G~i~~Lv~-------lL~s~d-----~~~q~~A~~aL~ 444 (683)
.+..++..|.+. +.+..|+.+|..--+..++--..+-. -|.+..|++ .|+.+. ..-.-+|+..|.
T Consensus 4 ~i~qli~~L~~p--~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ 81 (268)
T 2fv2_A 4 KIYQWINELSSP--ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ 81 (268)
T ss_dssp HHHHHHHHTSST--TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc--hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence 345566666644 45777774443322211222223333 377777654 333221 233457788888
Q ss_pred hhccCCchhhHHhhcCcHHHHHHHHcCCC----CHHHHHHHHHHHHHhccCch--hHHHhhccCCChHHHHHhhhcCCHH
Q 037121 445 KLSKHTSGKKVIVESGGLKVILKVLKSGL----SLEARQIAAATLFYLTSVKG--YRKLIGETPKAIPALVKLIEEGTDC 518 (683)
Q Consensus 445 nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~----~~e~~~~Aa~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~ 518 (683)
-++.+++.|..++++...--|.-+|.... -.-.|-.+.+++..|...++ --..... .+.||..++.+..|+.-
T Consensus 82 cvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~-tEiiplCLrime~Gsel 160 (268)
T 2fv2_A 82 CVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLT-TEIIPLCLRIMESGSEL 160 (268)
T ss_dssp HHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH-TTHHHHHHHHHHHSCHH
T ss_pred HHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHh-hhHHHHHHHHHhhccHH
Confidence 89999999999999987777777776531 13467888999999986543 2233344 88999999999999999
Q ss_pred HHHHHHHHHHHcccCCchhhhHhhc--------CcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCC--h
Q 037121 519 GKKNAVVAIFGLLLSQGNHQKVLDA--------GTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSA--L 588 (683)
Q Consensus 519 ~~~~A~~aL~nLs~~~~n~~~iv~~--------g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~--i 588 (683)
.+.-|...+..+..++.+...+... .++..++.-+...+++.+....+.+-..|+.++.++.++.+.=- +
T Consensus 161 SKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~L 240 (268)
T 2fv2_A 161 SKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQL 240 (268)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHh
Confidence 9999999999998887764444322 23444555554678899999999999999999999998864211 0
Q ss_pred --HHHHHhhccCCChHHHHHHHHHHHHH
Q 037121 589 --PVIIGLLQTLTSRAGKEYCVSILLSL 614 (683)
Q Consensus 589 --~~Lv~lL~~~~s~~~ke~A~~~L~~L 614 (683)
.....+++. ++..+..-...+.|+
T Consensus 241 rd~tf~~~l~~--D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 241 KDTTFAQVLKD--DTTTKRWLAQLVKNL 266 (268)
T ss_dssp TSSTTHHHHTS--CHHHHHHHHHHHHHS
T ss_pred hChHHHHHHhc--CHHHHHHHHHHHHhc
Confidence 122233432 566777666666554
No 161
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.64 E-value=0.35 Score=57.71 Aligned_cols=258 Identities=9% Similarity=0.080 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcC------CCCHHHHHHHHHHHHhhccCCchhhHHhhc-----C
Q 037121 392 EEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLS------SPDQCVQENAVAALLKLSKHTSGKKVIVES-----G 460 (683)
Q Consensus 392 ~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~------s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~-----g 460 (683)
..+..|...|..++..... .+. .-+++.+-..+. +.+...++.|+.+++.++.....+..-+.. .
T Consensus 376 s~R~aa~~~L~~l~~~~~~---~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEV---LVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHH---HHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcch---hHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 3456677777777764321 111 112333334444 466778899999999997543211100000 1
Q ss_pred cHH----HHHHHHcCC--CCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCC
Q 037121 461 GLK----VILKVLKSG--LSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ 534 (683)
Q Consensus 461 ~i~----~Lv~lL~~~--~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 534 (683)
..+ .++..|.+. ..+-+|..|++++..++..- ..... ..+++.++..|.+.+..++..|+.||.+++...
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~l---~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQL---IELMPILATFLQTDEYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHHH---HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHHH---HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence 112 223334433 26788999999999998642 12222 347888898888888999999999999998742
Q ss_pred c---------hhhhHhh--cCcHHHHHHHHccCC----ChhHHHHHHHHHHHhhC--ChhhHHHHHhcCChHHHHHhh--
Q 037121 535 G---------NHQKVLD--AGTVPLLADILASSN----RTELITDSLAVLANLAE--DIQGTSTILKTSALPVIIGLL-- 595 (683)
Q Consensus 535 ~---------n~~~iv~--~g~v~~Lv~lL~~~~----~~~~~~~al~iL~nLa~--~~~~~~~i~~~g~i~~Lv~lL-- 595 (683)
+ .+..+.. ..+++.|+.++.... .....+.++.+|..++. .++... ... ..++.|..++
T Consensus 528 ~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~~-~l~~~L~~~l~~ 605 (960)
T 1wa5_C 528 ESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LFP-QLLAQFIEIVTI 605 (960)
T ss_dssp SCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GHH-HHHHHHHHHHHH
T ss_pred cccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh-HHH-HHHHHHHHHHHH
Confidence 2 1222221 135556666663321 00022345555554432 111110 000 1223343333
Q ss_pred --ccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHh
Q 037121 596 --QTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 596 --~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 661 (683)
++...+.....++.+|..++...+.+....+. ..++|.+..++.+........+..++..+-..
T Consensus 606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~--~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV--DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH--HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH--HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 33334556667788887777653223333333 34688888888877666666676666655544
No 162
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=95.44 E-value=0.092 Score=57.10 Aligned_cols=245 Identities=13% Similarity=0.097 Sum_probs=150.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhc--CChHHHHhhcC---C----CC---HHHHHHHHHHHHh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVES--GAIPPLLNLLS---S----PD---QCVQENAVAALLK 445 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~--G~i~~Lv~lL~---s----~d---~~~q~~A~~aL~n 445 (683)
....|+..|-+..|++|.-|+-.||.+.+............ ...-.|+..|. - +| ..++|.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 56788899999999999999999999887543110000111 11222222221 1 22 5689999999988
Q ss_pred hccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHH
Q 037121 446 LSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVV 525 (683)
Q Consensus 446 Ls~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~ 525 (683)
+ .+-+.. -.++..++..+... .++++..++-.|.++ .+. +..-.++++.++.-|.+.+++++..|+.
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL---~DL---L~~Ld~Vv~aVL~GL~D~DDDVRAVAAe 321 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSG-DWQVQFSGLIALGYL---KEF---VEDKDGLCRKLVSLLSSPDEDIKLLSAE 321 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCS-CHHHHHHHHHHHHHT---GGG---CCCHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCC-CeeehhhhHHHHHHH---HHH---HHHHHHHHHHHHhhcCCcccHHHHHHHH
Confidence 8 543322 23444555444555 899999999999999 111 1112567888888889999999999999
Q ss_pred HHHHcccCCchhhhHhhcCcHHHHHHHHccCCC-hhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHH
Q 037121 526 AIFGLLLSQGNHQKVLDAGTVPLLADILASSNR-TELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGK 604 (683)
Q Consensus 526 aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~-~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~k 604 (683)
+|.-++ .++.... ++..+-..|.+-++ ..-....+..|+.|++.+.. +-.....+|.|.-++++. -+.+|
T Consensus 322 tLiPIA-~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHt-ITSVR 392 (800)
T 3oc3_A 322 LLCHFP-ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSP-VPEVR 392 (800)
T ss_dssp HHTTSC-CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCS-SHHHH
T ss_pred Hhhhhc-chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCC-cHHHH
Confidence 999998 2222222 23334444422111 12234456666776654321 001123488999999998 88999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHH
Q 037121 605 EYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIK 656 (683)
Q Consensus 605 e~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~ 656 (683)
..++.+|..+. . ......+ ...++-..++.+++.+..+-+
T Consensus 393 ~AVL~TL~tfL--~-~~~LRLI---------FQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 393 TSILNMVKNLS--E-ESIDFLV---------AEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHTTTCC--C-HHHHHHH---------HHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--h-hhHHHHH---------HHHHHhCCcHHHHHHHHHHHH
Confidence 99999998877 2 2222211 233556667777777666553
No 163
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.014 Score=60.51 Aligned_cols=64 Identities=16% Similarity=0.281 Sum_probs=53.0
Q ss_pred CccCCCCcccCCCcee-ccCccc--ccHHHHHHHHHh-CCCCCCCCCcccCCCCCCCcHHHHHHHHHH
Q 037121 279 DFRCPISLELMTDPVT-VSTGQT--YDRSSIQKWLKA-GNMLCPKTGEKLTNTELLPNTTLKKLIHQF 342 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv~-~~cght--~~r~cI~~w~~~-~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~ 342 (683)
.+.||++...|..|+- ..|.|. |+...+...... +.+.||+|++.+...++..+..+..++...
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC 316 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence 6899999999999997 579997 888766665543 678999999999888999998887776543
No 164
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.80 E-value=0.19 Score=49.27 Aligned_cols=147 Identities=15% Similarity=0.103 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCC-----HHHHHHHHHHHHhhccCCch--hhHHhhcCcHHHH
Q 037121 393 EKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPD-----QCVQENAVAALLKLSKHTSG--KKVIVESGGLKVI 465 (683)
Q Consensus 393 ~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d-----~~~q~~A~~aL~nLs~~~~~--r~~i~~~g~i~~L 465 (683)
-.+.|+..++.+|. +++.|..|.++...-.|..+|...+ .-++..++++++.|.+.++. -..+++.+.++..
T Consensus 72 RVcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplC 150 (268)
T 2fv2_A 72 RVCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLC 150 (268)
T ss_dssp HHHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHH
Confidence 34677777888886 7899999999987777888886633 46788899999999876544 3344588999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhcc-------CCChHHHHH-hhhcCCHHHHHHHHHHHHHcccCCchh
Q 037121 466 LKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGET-------PKAIPALVK-LIEEGTDCGKKNAVVAIFGLLLSQGNH 537 (683)
Q Consensus 466 v~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-------~g~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n~ 537 (683)
++++..| +.-.+..|+.++..+-.++..-.-+-.. ..++..+|. +..+.+++..++...+-..|+.++..+
T Consensus 151 Lrime~G-selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar 229 (268)
T 2fv2_A 151 LRIMESG-SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAR 229 (268)
T ss_dssp HHHHHHS-CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHhhc-cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHH
Confidence 9999999 8889999999998888777544333221 123333333 345678899999999999999888776
Q ss_pred hhHh
Q 037121 538 QKVL 541 (683)
Q Consensus 538 ~~iv 541 (683)
..+.
T Consensus 230 ~aL~ 233 (268)
T 2fv2_A 230 EALR 233 (268)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 165
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.58 E-value=0.014 Score=49.37 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=29.2
Q ss_pred CCccCCCCcc-cCCCcee--ccCcccccHHHHHHHHH
Q 037121 278 EDFRCPISLE-LMTDPVT--VSTGQTYDRSSIQKWLK 311 (683)
Q Consensus 278 ~~f~CpIc~~-~m~dPv~--~~cght~~r~cI~~w~~ 311 (683)
++..|++|.+ +..+||. +.|||+||+.|++.|+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4688999996 4789998 89999999999998543
No 166
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.53 E-value=0.58 Score=46.67 Aligned_cols=179 Identities=13% Similarity=0.061 Sum_probs=118.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcC-ChHHHHhhcCCCCHHHHHHHHHHHHhhcc---CCchhhH
Q 037121 380 RFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESG-AIPPLLNLLSSPDQCVQENAVAALLKLSK---HTSGKKV 455 (683)
Q Consensus 380 ~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G-~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~---~~~~r~~ 455 (683)
+.+...|-+.++..+.+|+..|......++. .++...+ .++.+.--+.+++..+...++.+|..+.. ....+-.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 3445666677888888999888877654432 2332221 23333323346789888888888877631 1111111
Q ss_pred Hhh-cCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCC
Q 037121 456 IVE-SGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQ 534 (683)
Q Consensus 456 i~~-~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 534 (683)
-.+ .-.+|.|+.=+... ...+|+.+-.++..++.. ......++.+++-+++.+.+.+..++..+..+-...
T Consensus 127 ~~ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v-------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDV-------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp HHHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 112 22578888777666 677888888777766532 221336677888889999999999999998886654
Q ss_pred chhhhHhhcCcH---HHHHHHHccCCChhHHHHHHHHHHHhh
Q 037121 535 GNHQKVLDAGTV---PLLADILASSNRTELITDSLAVLANLA 573 (683)
Q Consensus 535 ~n~~~iv~~g~v---~~Lv~lL~~~~~~~~~~~al~iL~nLa 573 (683)
+-. ...++ +.+.+++ ++.+..++..|+.++..+-
T Consensus 199 G~~----~~~~l~~~~~ia~ll-~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 199 GIS----PLKSLSVEKTVAPFV-GDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp CSG----GGGGGCHHHHHGGGG-GCSSHHHHHHHHHHHHHHH
T ss_pred CCC----ccccccchHHHHHHH-cCCCHHHHHHHHHHHHHHH
Confidence 432 23478 9999999 8889999999999998654
No 167
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=94.37 E-value=0.035 Score=57.44 Aligned_cols=66 Identities=15% Similarity=0.322 Sum_probs=54.3
Q ss_pred CCCccCCCCcccCCCcee-ccCccc--ccHHHHHHHHHh-CCCCCCCCCcccCCCCCCCcHHHHHHHHHH
Q 037121 277 PEDFRCPISLELMTDPVT-VSTGQT--YDRSSIQKWLKA-GNMLCPKTGEKLTNTELLPNTTLKKLIHQF 342 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv~-~~cght--~~r~cI~~w~~~-~~~~CP~c~~~l~~~~l~pn~~l~~~i~~~ 342 (683)
.-.+.||++...|..|+- ..|.|. |+...+...... +.+.||+|++.+...++..+..+...+...
T Consensus 213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~~ 282 (360)
T 4fo9_A 213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILNDC 282 (360)
T ss_dssp EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTTC
T ss_pred EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHhC
Confidence 346899999999999997 579997 888876666654 678999999999888899998888776543
No 168
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=93.62 E-value=0.86 Score=46.63 Aligned_cols=197 Identities=17% Similarity=0.135 Sum_probs=144.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhc--CChHHHHhhcCC-CCHHHHHHHHHHHHhhccCCchhh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVES--GAIPPLLNLLSS-PDQCVQENAVAALLKLSKHTSGKK 454 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~--G~i~~Lv~lL~s-~d~~~q~~A~~aL~nLs~~~~~r~ 454 (683)
++..|+..|..-+.|.+..++....++.+.....+...++. .--..|.-++.. +++++-.++-..|.....++.-..
T Consensus 79 ll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~la~ 158 (341)
T 1upk_A 79 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAK 158 (341)
T ss_dssp HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHHH
Confidence 56677888888899999999998888888765544332211 112222223322 566677777788888888888888
Q ss_pred HHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch-hHHHhhc--cCCChHHHHHhhhcCCHHHHHHHHHHHHHcc
Q 037121 455 VIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKG-YRKLIGE--TPKAIPALVKLIEEGTDCGKKNAVVAIFGLL 531 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~--~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 531 (683)
.|...+.+..+.+.+..+ +-++-..|.+++..|-..+. -...... ....+...-.+|.+++...++.++..|..|.
T Consensus 159 ~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelL 237 (341)
T 1upk_A 159 IILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELL 237 (341)
T ss_dssp HHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 888888888999999988 99999999999988854432 1111111 1234556677899999999999999999999
Q ss_pred cCCchhhhH----hhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCCh
Q 037121 532 LSQGNHQKV----LDAGTVPLLADILASSNRTELITDSLAVLANLAEDI 576 (683)
Q Consensus 532 ~~~~n~~~i----v~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~ 576 (683)
.+..|..-+ -+..-+..++.+| .+.+..++.+|..++.....+|
T Consensus 238 ldr~N~~vM~~Yis~~~nLkl~M~LL-~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 238 LDRHNFTIMTKYISKPENLKLMMNLL-RDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HSGGGHHHHHHHTTCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHCS
T ss_pred hCchHHHHHHHHhCCHHHHHHHHHHh-cCchhchhhhhhhheeeeeeCC
Confidence 998885433 3446788889999 8889999999999998776543
No 169
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.49 E-value=0.066 Score=52.73 Aligned_cols=49 Identities=14% Similarity=0.316 Sum_probs=39.5
Q ss_pred CccCCCCcccCCCceec-cCcccccHHHHHHHHHh-CCCCCCCCCcccCCC
Q 037121 279 DFRCPISLELMTDPVTV-STGQTYDRSSIQKWLKA-GNMLCPKTGEKLTNT 327 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv~~-~cght~~r~cI~~w~~~-~~~~CP~c~~~l~~~ 327 (683)
-..|.+|.++...-+.- .|++.|-..|+.+|+.. +...||.|+...+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 44799999999866554 49999999999999987 356999999876543
No 170
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=93.49 E-value=1 Score=45.99 Aligned_cols=145 Identities=14% Similarity=0.098 Sum_probs=89.3
Q ss_pred HHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhcc-CCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhH-hhcC
Q 037121 467 KVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGET-PKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKV-LDAG 544 (683)
Q Consensus 467 ~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~i-v~~g 544 (683)
..+....++..+--++.++.|+-.....+..+... ..+++.+...+.+.+..++..+++.++|++......... ....
T Consensus 154 ~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ 233 (304)
T 3ebb_A 154 NLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ 233 (304)
T ss_dssp HTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH
Confidence 33433335666888999999999888877666541 234455555555567888999999999999742110000 0111
Q ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHH-hhccCCChHHHHHHHHHH
Q 037121 545 TVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIG-LLQTLTSRAGKEYCVSIL 611 (683)
Q Consensus 545 ~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~-lL~~~~s~~~ke~A~~~L 611 (683)
++..+..++....+.+....++.+|++|...+.....+.+.=++...++ +......+++.+.|-.+|
T Consensus 234 ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~ 301 (304)
T 3ebb_A 234 CLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFIL 301 (304)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 4445556664456889999999999999865444444444444444444 555433555666655443
No 171
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.34 E-value=0.28 Score=49.23 Aligned_cols=189 Identities=17% Similarity=0.138 Sum_probs=116.4
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHhccCch---hHHHhh-ccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCch----
Q 037121 465 ILKVLKSGLSLEARQIAAATLFYLTSVKG---YRKLIG-ETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGN---- 536 (683)
Q Consensus 465 Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~---~~~~i~-~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n---- 536 (683)
+-+-|.+. ++..|..|...|..+..... ...... .-....+.+-..+.+.+..++..++.+|..++..-..
T Consensus 14 l~e~l~sk-~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYK-LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCS-SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccC-cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 33456666 88899999888877654321 111111 1123456667788888899999999998887653221
Q ss_pred --hhhHhhcCcHHHHHHH-HccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHH
Q 037121 537 --HQKVLDAGTVPLLADI-LASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLS 613 (683)
Q Consensus 537 --~~~iv~~g~v~~Lv~l-L~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~ 613 (683)
.....-..+++.|+.- | .+....++..|+.++..++........+ +..+...+.+. +|..+..++..|..
T Consensus 93 ~~~~~~~~~~~l~~lveK~l-~~~k~~~~~~a~~~l~~~~~~~~~~~~~-----~e~l~~~l~~K-npkv~~~~l~~l~~ 165 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGL-TSSRATTKTQSMSCILSLCGLDTSITQS-----VELVIPFFEKK-LPKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-SCCCHHHHHHHHHHHHHHHHTSSSSHHH-----HHHHGGGGGCS-CHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHhcCcHHHH-----HHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence 1222233567777765 5 6677888888888887775421111111 34455567777 89999999988877
Q ss_pred HhcCChHHH--HHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHhhh
Q 037121 614 LCSNAREEV--TASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFIE 663 (683)
Q Consensus 614 L~~~~~~~~--~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~~~ 663 (683)
+...-+... .+... ..+++.+..++.+.++.+|..|..++-.+-++..
T Consensus 166 ~l~~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp HHHHHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred HHHHhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 654211100 01111 1246678888999999999999999887776543
No 172
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=92.60 E-value=0.85 Score=46.52 Aligned_cols=161 Identities=12% Similarity=0.072 Sum_probs=96.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHH----HHhhcCC-CCHHHHHHHHHHHHhhccCCchhh
Q 037121 380 RFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPP----LLNLLSS-PDQCVQENAVAALLKLSKHTSGKK 454 (683)
Q Consensus 380 ~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~----Lv~lL~s-~d~~~q~~A~~aL~nLs~~~~~r~ 454 (683)
..+.+.+ +=+.+.+.-++..+|.++. ++.....+.+.+.-.. ++..+.+ ..+..+.-+++++.|+-.++..+.
T Consensus 106 ~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~ 183 (304)
T 3ebb_A 106 QILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK 183 (304)
T ss_dssp HHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred HHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence 3443433 3344556677777777765 4444444544322233 3344432 456679999999999999988888
Q ss_pred HHhhc--CcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhh-cCCHHHHHHHHHHHHHcc
Q 037121 455 VIVES--GGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIE-EGTDCGKKNAVVAIFGLL 531 (683)
Q Consensus 455 ~i~~~--g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs 531 (683)
.++.. .+++.+...+... +..++..++.+++|++.........-....++..+..++. ..+.+....++.||.+|.
T Consensus 184 ~l~~~~~~il~~~~~~~~~~-nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~ 262 (304)
T 3ebb_A 184 LMMSQRESLMSHAIELKSGS-NKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLI 262 (304)
T ss_dssp HHHHTHHHHHHHHHGGGSSC-CHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 77732 2344444444444 7788999999999998742111000000113344444443 357789999999999999
Q ss_pred cCCchhhhHhhc
Q 037121 532 LSQGNHQKVLDA 543 (683)
Q Consensus 532 ~~~~n~~~iv~~ 543 (683)
..++....+.+.
T Consensus 263 ~~~~~~~~lak~ 274 (304)
T 3ebb_A 263 SDDSNAVQLAKS 274 (304)
T ss_dssp TTCHHHHHHHHH
T ss_pred hCChhHHHHHHH
Confidence 876555444444
No 173
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=92.22 E-value=3.1 Score=40.47 Aligned_cols=177 Identities=14% Similarity=0.179 Sum_probs=104.8
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHHHHhcCchh-hHHHHhcCChHHHHhhcCC-----------CCHHHHHHHHHHHHhhcc
Q 037121 382 LARRLFFGT-NEEKNKAAYEIRLLAKSNIFN-RSCIVESGAIPPLLNLLSS-----------PDQCVQENAVAALLKLSK 448 (683)
Q Consensus 382 Lv~~L~s~~-~~~~~~a~~~L~~La~~~~~~-r~~i~~~G~i~~Lv~lL~s-----------~d~~~q~~A~~aL~nLs~ 448 (683)
.++.|.++. .+.-.+-+..|+..-+.++.. -..| ..|++..|+.+|.. .+...+..++.+|..+..
T Consensus 5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn 83 (233)
T 2f31_A 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 83 (233)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence 345555543 222233445555444444333 2233 46778888887742 146778889999999987
Q ss_pred CCchhhHHh-hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch--h-HHHhh---------ccCCChHHHHHhhhcC
Q 037121 449 HTSGKKVIV-ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKG--Y-RKLIG---------ETPKAIPALVKLIEEG 515 (683)
Q Consensus 449 ~~~~r~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~-~~~i~---------~~~g~i~~Lv~lL~~~ 515 (683)
+..+...++ ..+++..|+..|.+. +..++..++.+|..+|..++ + ...+. ....-+..+++.+.+.
T Consensus 84 ~~~G~~~vl~~~~~i~~l~~~L~s~-~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 162 (233)
T 2f31_A 84 NKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 162 (233)
T ss_dssp SHHHHHHHHTSSSHHHHHHTTCCTT-SHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT
T ss_pred ChHHHHHHHcCcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC
Confidence 777766666 667899999988877 88999999988888876543 2 22221 1245667788877653
Q ss_pred C-HHHHHHHHHHHHHcccCCch-------hhhHhhcCcHHHHHHHHccCCChhH
Q 037121 516 T-DCGKKNAVVAIFGLLLSQGN-------HQKVLDAGTVPLLADILASSNRTEL 561 (683)
Q Consensus 516 ~-~~~~~~A~~aL~nLs~~~~n-------~~~iv~~g~v~~Lv~lL~~~~~~~~ 561 (683)
+ .+.+..++..+-.+....++ +..+...|..+.+-++ ....++++
T Consensus 163 ~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l-~~~~~~~L 215 (233)
T 2f31_A 163 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQEL-REIENEDM 215 (233)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHH-HHCCCHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHH-hccCCHHH
Confidence 3 34444444444344444432 4555666665555444 24444443
No 174
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=92.01 E-value=5.7 Score=41.75 Aligned_cols=177 Identities=15% Similarity=0.181 Sum_probs=111.2
Q ss_pred HHHHHhcCCCH-HHHHHHHHHHHHHHhcCchh-hHHHHhcCChHHHHhhcC-----------CCCHHHHHHHHHHHHhhc
Q 037121 381 FLARRLFFGTN-EEKNKAAYEIRLLAKSNIFN-RSCIVESGAIPPLLNLLS-----------SPDQCVQENAVAALLKLS 447 (683)
Q Consensus 381 ~Lv~~L~s~~~-~~~~~a~~~L~~La~~~~~~-r~~i~~~G~i~~Lv~lL~-----------s~d~~~q~~A~~aL~nLs 447 (683)
..+..|.++.. +...+.+..|+..-+.++.. -..|. .+++..|+.+|. ..+...+..++.+|..+-
T Consensus 70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm 148 (383)
T 3eg5_B 70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 148 (383)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence 34556665532 22234566666554544433 23444 567888888874 235678889999999998
Q ss_pred cCCchhhHHh-hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch--h-HHH----------hhccCCChHHHHHhhh
Q 037121 448 KHTSGKKVIV-ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKG--Y-RKL----------IGETPKAIPALVKLIE 513 (683)
Q Consensus 448 ~~~~~r~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~-~~~----------i~~~~g~i~~Lv~lL~ 513 (683)
.+..+...++ ...++..|+..|.+. +..++..|..+|..+|...+ + ... .+. ..-+..+++.+.
T Consensus 149 N~~~G~~~vl~~~~~i~~l~~~L~s~-~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e-~~RF~~lv~~L~ 226 (383)
T 3eg5_B 149 NNKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE-VERFQPLLDGLK 226 (383)
T ss_dssp SSHHHHHHHHTCSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT-SCTTHHHHHTTS
T ss_pred cchhhHHHHHcChHHHHHHHHHhCCC-chHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCC-CCcHHHHHHHHH
Confidence 7777766666 667899999999887 88999999999988887543 1 111 222 556788888887
Q ss_pred cC-CHHHHHHHHHHHHHcccCCch-------hhhHhhcCcHHHHHHHHccCCChhH
Q 037121 514 EG-TDCGKKNAVVAIFGLLLSQGN-------HQKVLDAGTVPLLADILASSNRTEL 561 (683)
Q Consensus 514 ~~-~~~~~~~A~~aL~nLs~~~~n-------~~~iv~~g~v~~Lv~lL~~~~~~~~ 561 (683)
++ +...+..++..+-.+....++ +..+...|..+.+-. |....++++
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~~~~~L 281 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LREIENEDM 281 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTSCCHHH
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcCCChhH
Confidence 74 444444444444444444432 455566776666655 534444444
No 175
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=91.44 E-value=4.4 Score=48.11 Aligned_cols=220 Identities=13% Similarity=0.149 Sum_probs=122.5
Q ss_pred CCCHHHHHHHHHHHHHHHhcCchhhHHHHhc-----CChHH----HHhhcCCC---CHHHHHHHHHHHHhhccCCchhhH
Q 037121 388 FGTNEEKNKAAYEIRLLAKSNIFNRSCIVES-----GAIPP----LLNLLSSP---DQCVQENAVAALLKLSKHTSGKKV 455 (683)
Q Consensus 388 s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~-----G~i~~----Lv~lL~s~---d~~~q~~A~~aL~nLs~~~~~r~~ 455 (683)
+.+|..+..|+..+..++........ -... ...+. ++..|.+. ++-++..|+++|+.++..- ..+
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~- 492 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA- 492 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccC-CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH-
Confidence 56788888999999999853210000 0000 11222 23334555 8999999999999998652 122
Q ss_pred HhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch---------hHHHhhc-cCCChHHHHHhhhcCC---HH--HH
Q 037121 456 IVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKG---------YRKLIGE-TPKAIPALVKLIEEGT---DC--GK 520 (683)
Q Consensus 456 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~---------~~~~i~~-~~g~i~~Lv~lL~~~~---~~--~~ 520 (683)
. -..+++.++..|.+. +..++..|+.+|.+++...+ .+..+.. ....++.|+.++.... .. ..
T Consensus 493 ~-l~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~ 570 (960)
T 1wa5_C 493 Q-LIELMPILATFLQTD-EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAEN 570 (960)
T ss_dssp H-HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSC
T ss_pred H-HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccccc
Confidence 2 234677888888776 78999999999999987422 1222321 0123444555655531 11 23
Q ss_pred HHHHHHHHHcccC-CchhhhHhhcCcHHHHHHHHcc----CCChhHHHHHHHHHHHhhC--ChhhHHHHHhcCChHHHHH
Q 037121 521 KNAVVAIFGLLLS-QGNHQKVLDAGTVPLLADILAS----SNRTELITDSLAVLANLAE--DIQGTSTILKTSALPVIIG 593 (683)
Q Consensus 521 ~~A~~aL~nLs~~-~~n~~~iv~~g~v~~Lv~lL~~----~~~~~~~~~al~iL~nLa~--~~~~~~~i~~~g~i~~Lv~ 593 (683)
..++.+|..++.. .+.....+. ..++.|+..+.. ..++.+...++.+|..++. .++....+. ...+|.+..
T Consensus 571 e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~p~~~~ 648 (960)
T 1wa5_C 571 EFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLT 648 (960)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHHH
Confidence 4556666655432 122222211 255556665532 2356676677888887764 333333332 244677777
Q ss_pred hhccCCChHHHHHHHHHHHHHh
Q 037121 594 LLQTLTSRAGKEYCVSILLSLC 615 (683)
Q Consensus 594 lL~~~~s~~~ke~A~~~L~~L~ 615 (683)
+|... .....+.+..++..+.
T Consensus 649 iL~~~-~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 649 VFSED-IQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHTT-CTTTHHHHHHHHHHHH
T ss_pred HHHhh-hHhhHHHHHHHHHHHH
Confidence 77654 4455555666554443
No 176
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.03 E-value=6.7 Score=42.04 Aligned_cols=123 Identities=17% Similarity=0.164 Sum_probs=89.2
Q ss_pred hcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHH
Q 037121 386 LFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVI 465 (683)
Q Consensus 386 L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~L 465 (683)
...|+...+.-|+.-|..+.++.++.... +|..++.|..+.|..+|.+|+..|-.+|.+ ++-. .+.+.|
T Consensus 37 ~~kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~-----kiaDvL 105 (507)
T 3u0r_A 37 GVKGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLP-----RVADIL 105 (507)
T ss_dssp GGGSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHH-----HHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhh-----hHHHHH
Confidence 35678889999999999999888875443 468899999999999999999999999988 4422 246778
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHH
Q 037121 466 LKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIF 528 (683)
Q Consensus 466 v~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~ 528 (683)
+.+|..+ +..-...+-.+|..|-..+. .+.+..|..-+.+++..+++.++.-|.
T Consensus 106 ~QlLqtd-d~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 106 TQLLQTD-DSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp HHHTTCC-CHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHhcc-chHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 8999987 55545555555555543221 344555666666677777777777764
No 177
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=89.97 E-value=1.1 Score=44.69 Aligned_cols=145 Identities=13% Similarity=0.100 Sum_probs=99.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--chhhHHHHh-cCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhh
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSN--IFNRSCIVE-SGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKK 454 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~--~~~r~~i~~-~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~ 454 (683)
..+++.-++.+.+..+...++..|..+...- ..++-.-.+ .-++|.|+.-+.+....+++.+-.+|..+...
T Consensus 88 l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v----- 162 (266)
T 2of3_A 88 LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV----- 162 (266)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-----
Confidence 3455554556778888888888877764311 111111222 23689999999999999999888888776521
Q ss_pred HHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCCh---HHHHHhhhcCCHHHHHHHHHHHHHcc
Q 037121 455 VIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAI---PALVKLIEEGTDCGKKNAVVAIFGLL 531 (683)
Q Consensus 455 ~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i---~~Lv~lL~~~~~~~~~~A~~aL~nLs 531 (683)
.--..+++.++.-+++- +...|+.++..+.++-...... . ..++ |.+..++.+.+..++..|+.++..+-
T Consensus 163 -~~~~~v~~~l~~g~ksK-N~R~R~e~l~~l~~li~~~G~~----~-~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 163 -VGPLKMTPMLLDALKSK-NARQRSECLLVIEYYITNAGIS----P-LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp -HCHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHCSG----G-GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCC----c-cccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 11223566667767666 8899999999888885432221 2 4478 99999999999999999999987665
Q ss_pred cCC
Q 037121 532 LSQ 534 (683)
Q Consensus 532 ~~~ 534 (683)
.+-
T Consensus 236 ~~~ 238 (266)
T 2of3_A 236 KFE 238 (266)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 178
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=89.71 E-value=0.42 Score=47.16 Aligned_cols=82 Identities=16% Similarity=0.153 Sum_probs=51.5
Q ss_pred CchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 037121 408 NIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFY 487 (683)
Q Consensus 408 ~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~ 487 (683)
++..|......=....|..++.+++..++..++..| . .+.+..++... +..+|..++..
T Consensus 63 ~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L---~--------------~~~L~~ll~D~-d~~VR~~aA~~--- 121 (244)
T 1lrv_A 63 FWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRL---P--------------REQLSALMFDE-DREVRITVADR--- 121 (244)
T ss_dssp SHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTS---C--------------SGGGGGTTTCS-CHHHHHHHHHH---
T ss_pred CHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHC---C--------------HHHHHHHHcCC-CHHHHHHHHHh---
Confidence 455566666543445667778888999998887642 1 12345556666 77888777663
Q ss_pred hccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHH
Q 037121 488 LTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVV 525 (683)
Q Consensus 488 Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~ 525 (683)
+. .+.|..++++++..++..++.
T Consensus 122 l~---------------~~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 122 LP---------------LEQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp SC---------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred CC---------------HHHHHHHHcCCCHHHHHHHHH
Confidence 21 123555667777777777766
No 179
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=89.45 E-value=0.36 Score=47.67 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=27.4
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHH
Q 037121 384 RRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAA 442 (683)
Q Consensus 384 ~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~a 442 (683)
..+...++.++..++.. -..+.|..++.+++..++..++..
T Consensus 81 ~L~~D~~~~VR~~aA~~------------------L~~~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 81 PLIRDSDEVVRRAVAYR------------------LPREQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp GGTTCSSHHHHHHHHTT------------------SCSGGGGGTTTCSCHHHHHHHHHH
T ss_pred HHccCcCHHHHHHHHHH------------------CCHHHHHHHHcCCCHHHHHHHHHh
Confidence 33455566666666632 123567888888999999887774
No 180
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=89.10 E-value=2.5 Score=46.17 Aligned_cols=213 Identities=16% Similarity=0.136 Sum_probs=136.2
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHhhccCCc---hhhHHhhcCcHHHHHHHH--c-------CCCCHHHHHHHHHHHHH
Q 037121 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTS---GKKVIVESGGLKVILKVL--K-------SGLSLEARQIAAATLFY 487 (683)
Q Consensus 420 ~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~---~r~~i~~~g~i~~Lv~lL--~-------~~~~~e~~~~Aa~~L~~ 487 (683)
+.+.|+.-|-++.-+++.-|+.+|..+..... +|..-......-.++.+| + +..-..+||.|+-+|..
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 55677777888899999999999988753322 122111113333333333 2 12346799999999998
Q ss_pred hccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHH
Q 037121 488 LTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLA 567 (683)
Q Consensus 488 Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~ 567 (683)
+ ..-... -.++..|+..+....-+++..++..|.++ .+-... =.++++.++.-| .+.+++++..|+.
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~--Ld~Vv~aVL~GL-~D~DDDVRAVAAe 321 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED--KDGLCRKLVSLL-SSPDEDIKLLSAE 321 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC--HHHHHHHHHHHT-TCSSHHHHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH--HHHHHHHHHhhc-CCcccHHHHHHHH
Confidence 8 432221 23555566555667788999999999999 221111 135677777778 7788999999999
Q ss_pred HHHHhhCChhhHHHHHhcCChHHHHHhhccCC-ChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHH
Q 037121 568 VLANLAEDIQGTSTILKTSALPVIIGLLQTLT-SRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQ 646 (683)
Q Consensus 568 iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~-s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~ 646 (683)
+|.-++ .++....+ +..+...|.+.+ -..........|..||.... .....+..+|.|+..+.+.-+.
T Consensus 322 tLiPIA-~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~-----~a~~dp~LVPRL~PFLRHtITS 390 (800)
T 3oc3_A 322 LLCHFP-ITDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENP-----ELSIPPERLKDIFPCFTSPVPE 390 (800)
T ss_dssp HHTTSC-CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT-----TCCCCSGGGGGTGGGGTCSSHH
T ss_pred Hhhhhc-chhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc-----ccccChHHHHHHHhhhcCCcHH
Confidence 998888 22222222 234444444321 22345566777888888752 1122357899999999999999
Q ss_pred HHHHHHHHHH
Q 037121 647 ARKKARSLIK 656 (683)
Q Consensus 647 ~k~~A~~lL~ 656 (683)
+|..+..++.
T Consensus 391 VR~AVL~TL~ 400 (800)
T 3oc3_A 391 VRTSILNMVK 400 (800)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9988777654
No 181
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=88.98 E-value=6.4 Score=46.68 Aligned_cols=217 Identities=12% Similarity=0.050 Sum_probs=116.8
Q ss_pred CCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHH---c-CCCCHHHHHHHHHHHHHhccCch-hHHHhhccCCCh
Q 037121 431 PDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVL---K-SGLSLEARQIAAATLFYLTSVKG-YRKLIGETPKAI 505 (683)
Q Consensus 431 ~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL---~-~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~~g~i 505 (683)
.+-..++.|+.+++.++....... ...++.++.++ . .+....++..+++++..++..-. +...+ ..++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l---~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI---PPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH---HHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH---HHHH
Confidence 466788899999999875533211 13344455444 2 11267889999999998875321 11111 2356
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHh--hcCcHHHHHHHHccC-CChhHHHHHHHHHHHhhCC--hhhHH
Q 037121 506 PALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVL--DAGTVPLLADILASS-NRTELITDSLAVLANLAED--IQGTS 580 (683)
Q Consensus 506 ~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv--~~g~v~~Lv~lL~~~-~~~~~~~~al~iL~nLa~~--~~~~~ 580 (683)
+.|+..+ + +.++..|+.++.+++..-+ ..+. -.+++..|.+++... .+......++.+++.++.. ++...
T Consensus 549 ~~l~~~l-~--~~v~~~A~~al~~l~~~~~--~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~ 623 (971)
T 2x1g_F 549 NLLVRGL-N--SSMSAQATLGLKELCRDCQ--LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP 623 (971)
T ss_dssp HHHHHHH-H--SSCHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHHHh-C--hHHHHHHHHHHHHHHHHHH--HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 6677766 3 6789999999999995432 2222 123555566666322 2467777777777777642 23332
Q ss_pred HHHhcCChHHHH----HhhccCC-ChHHHHHHHHHHHHHhcC-----Ch----------HHHHHHHhcCCCcHHHHHHhH
Q 037121 581 TILKTSALPVII----GLLQTLT-SRAGKEYCVSILLSLCSN-----AR----------EEVTASLAKDPSLMNSLYSLT 640 (683)
Q Consensus 581 ~i~~~g~i~~Lv----~lL~~~~-s~~~ke~A~~~L~~L~~~-----~~----------~~~~~~l~~~~g~i~~L~~Ll 640 (683)
...+ ..++.++ .++.... ++..+......+..|+.. .. .+....+. ..+++.+..++
T Consensus 624 ~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l 700 (971)
T 2x1g_F 624 KYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM--QRTMPIFKRIA 700 (971)
T ss_dssp HHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH--HTTHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH--HHHHHHHHHHH
Confidence 2222 1223333 3333321 233344444444444321 00 00011122 23677777777
Q ss_pred hcC--CHHHHHHHHHHHHHHHHhh
Q 037121 641 TDG--TSQARKKARSLIKILHKFI 662 (683)
Q Consensus 641 ~~g--~~~~k~~A~~lL~~l~~~~ 662 (683)
... ++.+.+.|.+++..+-...
T Consensus 701 ~~~~~~~~v~e~~~~~~~~~~~~~ 724 (971)
T 2x1g_F 701 EMWVEEIDVLEAACSAMKHAITNL 724 (971)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhccccHHHHHHHHHHHHHHHHhh
Confidence 643 6788899999888765543
No 182
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=88.48 E-value=15 Score=38.63 Aligned_cols=178 Identities=15% Similarity=0.162 Sum_probs=106.6
Q ss_pred HHHHhcCCCHHH-HHHHHHHHHHHHhcCchh-hHHHHhcCChHHHHhhcCC-----------CCHHHHHHHHHHHHhhcc
Q 037121 382 LARRLFFGTNEE-KNKAAYEIRLLAKSNIFN-RSCIVESGAIPPLLNLLSS-----------PDQCVQENAVAALLKLSK 448 (683)
Q Consensus 382 Lv~~L~s~~~~~-~~~a~~~L~~La~~~~~~-r~~i~~~G~i~~Lv~lL~s-----------~d~~~q~~A~~aL~nLs~ 448 (683)
.|..|.++.... -.+.+..|+..-+.++.. -..|. .|++..|+.+|.. .+...+..++.+|..+..
T Consensus 9 yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN 87 (386)
T 2bnx_A 9 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 87 (386)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC
Confidence 355565553221 123455555444444333 22333 5677888887742 156778889999999987
Q ss_pred CCchhhHHh-hcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCch--h-HHHhh---------ccCCChHHHHHhhhcC
Q 037121 449 HTSGKKVIV-ESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKG--Y-RKLIG---------ETPKAIPALVKLIEEG 515 (683)
Q Consensus 449 ~~~~r~~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~--~-~~~i~---------~~~g~i~~Lv~lL~~~ 515 (683)
+..+...++ ..+++..|+..|.+. +..++..++.+|..+|...+ + ...+. ....-+..||+.+.++
T Consensus 88 ~~~Gl~~vl~~~~~i~~l~~sL~s~-~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 166 (386)
T 2bnx_A 88 NKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 166 (386)
T ss_dssp SHHHHHHHHHSSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred CHHHHHHHHcCcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC
Confidence 777766666 667899999888877 78888889888888877543 2 21111 1245667788887644
Q ss_pred C-HHHHHHHHHHHHHcccCCch-------hhhHhhcCcHHHHHHHHccCCChhHH
Q 037121 516 T-DCGKKNAVVAIFGLLLSQGN-------HQKVLDAGTVPLLADILASSNRTELI 562 (683)
Q Consensus 516 ~-~~~~~~A~~aL~nLs~~~~n-------~~~iv~~g~v~~Lv~lL~~~~~~~~~ 562 (683)
+ ...+..++..+-.+....++ +..+...|..+.+- -|....++.+.
T Consensus 167 ~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~-~Lr~~~~~~L~ 220 (386)
T 2bnx_A 167 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQ-ELREIENEDMK 220 (386)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHH-HHTTCCCHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHH-HHhccCChhHH
Confidence 3 34444444444444444443 45666777666654 44344455443
No 183
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=88.35 E-value=5.2 Score=38.90 Aligned_cols=145 Identities=19% Similarity=0.176 Sum_probs=96.1
Q ss_pred hcCcHHHHHHHHcC----CC------CHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHH
Q 037121 458 ESGGLKVILKVLKS----GL------SLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAI 527 (683)
Q Consensus 458 ~~g~i~~Lv~lL~~----~~------~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL 527 (683)
..||+..|+.+|.. +. +......+..+|..+..+......+...++++..|+..|.+....++..++..|
T Consensus 41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL 120 (233)
T 2f31_A 41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 46778888888763 11 234466788888888888777777777788999999999988999999999999
Q ss_pred HHcccCCc--h-hhhHhhc----------CcHHHHHHHHccCCChhHHHHHHHHHHHhhCCh---hh----HHHHHhcCC
Q 037121 528 FGLLLSQG--N-HQKVLDA----------GTVPLLADILASSNRTELITDSLAVLANLAEDI---QG----TSTILKTSA 587 (683)
Q Consensus 528 ~nLs~~~~--n-~~~iv~~----------g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~---~~----~~~i~~~g~ 587 (683)
..+|..++ + ...+.++ .-...+++.|..+.+.+....++..+-.+..++ +. |..+.. -|
T Consensus 121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~-~G 199 (233)
T 2f31_A 121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMR-LG 199 (233)
T ss_dssp HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-CC
Confidence 88887664 4 4444332 355667777744455667776777666665433 22 333344 34
Q ss_pred hHHHHHhhccCCChHH
Q 037121 588 LPVIIGLLQTLTSRAG 603 (683)
Q Consensus 588 i~~Lv~lL~~~~s~~~ 603 (683)
+..+++-++...++..
T Consensus 200 l~~il~~l~~~~~~~L 215 (233)
T 2f31_A 200 LHQVLQELREIENEDM 215 (233)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred hHHHHHHHhccCCHHH
Confidence 5555554444324443
No 184
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=86.10 E-value=24 Score=41.69 Aligned_cols=173 Identities=13% Similarity=0.089 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhh---h--cCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHH
Q 037121 474 SLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLI---E--EGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPL 548 (683)
Q Consensus 474 ~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL---~--~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~ 548 (683)
+...++.|..++..++..-.... ...++.++.++ . +.++.++..++++|..++..-........ .+++.
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~-~vl~~ 550 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP-PAINL 550 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH-HHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHH
Confidence 56788999999988876433211 23445454433 2 23788999999999998864222111111 34566
Q ss_pred HHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHh--cCChHHHHHhhccCC-ChHHHHHHHHHHHHHhcCCh-HHHHH
Q 037121 549 LADILASSNRTELITDSLAVLANLAEDIQGTSTILK--TSALPVIIGLLQTLT-SRAGKEYCVSILLSLCSNAR-EEVTA 624 (683)
Q Consensus 549 Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~--~g~i~~Lv~lL~~~~-s~~~ke~A~~~L~~L~~~~~-~~~~~ 624 (683)
|+..| + +.+...|+.+|.+++. +.+..+.. .+.+..+.+++..+. +...++.+..++..+...-+ ++...
T Consensus 551 l~~~l-~---~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 551 LVRGL-N---SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp HHHHH-H---SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHh-C---hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 66666 3 6788999999999994 23333321 122455666676631 56788888888888766421 23222
Q ss_pred HHhcCCCcHHHHH----HhHhcC--CHHHHHHHHHHHHHHHHh
Q 037121 625 SLAKDPSLMNSLY----SLTTDG--TSQARKKARSLIKILHKF 661 (683)
Q Consensus 625 ~l~~~~g~i~~L~----~Ll~~g--~~~~k~~A~~lL~~l~~~ 661 (683)
.+. .++++++ .++.+. ++..+..+...+..|...
T Consensus 625 ~~~---~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~ 664 (971)
T 2x1g_F 625 YLD---IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTL 664 (971)
T ss_dssp HHH---HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH
Confidence 221 2233444 333443 444556666666666544
No 185
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=84.07 E-value=38 Score=39.77 Aligned_cols=134 Identities=10% Similarity=0.052 Sum_probs=86.6
Q ss_pred CCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHc---CCCCHHHHHHHHHHHHHhccCch-hHHHhhccCCC
Q 037121 429 SSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLK---SGLSLEARQIAAATLFYLTSVKG-YRKLIGETPKA 504 (683)
Q Consensus 429 ~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~---~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~~g~ 504 (683)
.+.+...++.++.+++.++..-... ....++.++.++. .+ +..++..+++++..++..-. +...+ ..+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~~~~l~~~~~~l---~~v 530 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISIS-NVQLADTVMFTIGALSEWLADHPVMI---NSV 530 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHTHHHHHHCHHHH---TTT
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHHHHHHhCHHHH---HHH
Confidence 4567888999999999998653321 1233455555543 23 67789999999998875321 22222 568
Q ss_pred hHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhh--cCcHHHHHHHHccC-CChhHHHHHHHHHHHhhC
Q 037121 505 IPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLD--AGTVPLLADILASS-NRTELITDSLAVLANLAE 574 (683)
Q Consensus 505 i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~--~g~v~~Lv~lL~~~-~~~~~~~~al~iL~nLa~ 574 (683)
++.|+..+.+ +.++..|+.+|.+++.... ..+.. ..++..|..++... .+...+..++.+++.++.
T Consensus 531 l~~l~~~l~~--~~V~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 531 LPLVLHALGN--PELSVSSVSTLKKICRECK--YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHHHHHHTTC--GGGHHHHHHHHHHHHHHTG--GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCC--chHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 8999988854 7889999999999996322 22221 13444455555321 246777778888888764
No 186
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=84.02 E-value=14 Score=38.82 Aligned_cols=143 Identities=19% Similarity=0.187 Sum_probs=98.4
Q ss_pred hHHhhcCcHHHHHHHHcC----C------CCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHH
Q 037121 454 KVIVESGGLKVILKVLKS----G------LSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNA 523 (683)
Q Consensus 454 ~~i~~~g~i~~Lv~lL~~----~------~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A 523 (683)
..++ .+|+..|+.+|.. + .+......+..+|..+..+......+.....++..|+..+.+..+.++..|
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~a 182 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDA 182 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHH
Confidence 4444 6788999998852 1 123556678888888888877777777778999999999999999999999
Q ss_pred HHHHHHcccCCc--h-hhhHhh----------cCcHHHHHHHHccCCChhHHHHHHHHHHHhhCCh---hhH----HHHH
Q 037121 524 VVAIFGLLLSQG--N-HQKVLD----------AGTVPLLADILASSNRTELITDSLAVLANLAEDI---QGT----STIL 583 (683)
Q Consensus 524 ~~aL~nLs~~~~--n-~~~iv~----------~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~---~~~----~~i~ 583 (683)
+..|..+|..++ + ...+.+ ..-+..++..|....+.+....++..+-.+..++ +.| ..+.
T Consensus 183 leLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~ 262 (383)
T 3eg5_B 183 AKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELM 262 (383)
T ss_dssp HHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999888764 3 444433 2457778888844456677777777776665432 233 3344
Q ss_pred hcCChHHHHHhhccC
Q 037121 584 KTSALPVIIGLLQTL 598 (683)
Q Consensus 584 ~~g~i~~Lv~lL~~~ 598 (683)
.. |+..++.-|+..
T Consensus 263 ~~-Gl~~il~~lr~~ 276 (383)
T 3eg5_B 263 RL-GLHQVLQELREI 276 (383)
T ss_dssp HT-THHHHHHHHTTS
T ss_pred HC-ChHHHHHHHhcC
Confidence 44 444455545544
No 187
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=83.75 E-value=41 Score=34.31 Aligned_cols=240 Identities=17% Similarity=0.147 Sum_probs=164.5
Q ss_pred HHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch-hh----HHh-hcCcHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 037121 414 CIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG-KK----VIV-ESGGLKVILKVLKSGLSLEARQIAAATLFY 487 (683)
Q Consensus 414 ~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~-r~----~i~-~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~ 487 (683)
.+...+.+..|+..|..=+-+.+..+..+..++.....+ +. .+. ....+..|+.--. +.+.--.+-..|..
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe---~~diAl~~G~mLRe 149 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc---cchhHhHHHHHHHH
Confidence 455678899999999988999999999999988765433 21 222 1222222222222 33555667777888
Q ss_pred hccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCc-hhhhHhhcC---cHHHHHHHHccCCChhHHH
Q 037121 488 LTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQG-NHQKVLDAG---TVPLLADILASSNRTELIT 563 (683)
Q Consensus 488 Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~iv~~g---~v~~Lv~lL~~~~~~~~~~ 563 (683)
+...+.....+.. .+.+-.+.+.+..++=++..+|..++..|..... -...+.... .+...-.+| .+++--++.
T Consensus 150 cir~e~la~~iL~-~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll-~S~NYVTkR 227 (341)
T 1upk_A 150 CIRHEPLAKIILW-SEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLL-HSENYVTKR 227 (341)
T ss_dssp HHTSHHHHHHHHH-SGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHT-TCSSHHHHH
T ss_pred HHHhHHHHHHHhc-cHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHh-cCCcchhHH
Confidence 8888777777777 7788888999998888999999999988866433 344444442 456677777 777888999
Q ss_pred HHHHHHHHhhCChhhHHHH---HhcCC-hHHHHHhhccCCChHHHHHHHHHHHHHhcCC--hHHHHHHHhcCCCcHHHHH
Q 037121 564 DSLAVLANLAEDIQGTSTI---LKTSA-LPVIIGLLQTLTSRAGKEYCVSILLSLCSNA--REEVTASLAKDPSLMNSLY 637 (683)
Q Consensus 564 ~al~iL~nLa~~~~~~~~i---~~~g~-i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~--~~~~~~~l~~~~g~i~~L~ 637 (683)
.++..|+.|--+..+...+ ++.+. +..++.+|++. +...+-.|.-+.--+..+. +..+...+.. . =..|+
T Consensus 228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~-N--r~kLl 303 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANPNKTQPILDILLK-N--QAKLI 303 (341)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCSSCCHHHHHHHHH-T--HHHHH
T ss_pred HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCCCCChHHHHHHHH-H--HHHHH
Confidence 9999999997655554444 34343 88888899988 8999999999877666654 3567777776 3 45555
Q ss_pred HhHhc----C--CHHHHHHHHHHHHHHHHhh
Q 037121 638 SLTTD----G--TSQARKKARSLIKILHKFI 662 (683)
Q Consensus 638 ~Ll~~----g--~~~~k~~A~~lL~~l~~~~ 662 (683)
.++.+ . +..-...=..+++.+....
T Consensus 304 ~fl~~f~~d~~eDeqF~dEK~~lI~~I~~L~ 334 (341)
T 1upk_A 304 EFLSKFQNDRTEDEQFNDEKTYLVKQIRDLK 334 (341)
T ss_dssp HHHHHTTTTC-CCSHHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCCCcchhhHHHHHHHHHHHHHhCC
Confidence 55432 2 3344444455666666553
No 188
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=83.22 E-value=18 Score=36.94 Aligned_cols=109 Identities=20% Similarity=0.215 Sum_probs=86.2
Q ss_pred HHhhccCCch-hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhh-cCCHHHH
Q 037121 443 LLKLSKHTSG-KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIE-EGTDCGK 520 (683)
Q Consensus 443 L~nLs~~~~~-r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~ 520 (683)
|+||-.++.| -+.+++.+++..+..++.-. +.++.+.....|...|....-+..-. ...+|.++.++. ++++++.
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYp-N~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~eDdvv 342 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYP-NNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHPDDEVI 342 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecC-CcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCCCcceE
Confidence 4566666655 78899999999999999988 88888888888888876544332222 467898888875 5778899
Q ss_pred HHHHHHHHHcccCCc-hhhhHhhcCcHHHHHHHHc
Q 037121 521 KNAVVAIFGLLLSQG-NHQKVLDAGTVPLLADILA 554 (683)
Q Consensus 521 ~~A~~aL~nLs~~~~-n~~~iv~~g~v~~Lv~lL~ 554 (683)
-.....|.|...+.. .+...+..|+++.|-..+.
T Consensus 343 YSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 343 YSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred EecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 999999999998876 4677788999999998874
No 189
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=82.72 E-value=8.6 Score=45.96 Aligned_cols=140 Identities=8% Similarity=-0.021 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHHhccCchhH-HHhhccCCChHHHHHhhhc-----CCHHHHHHHHHHHHHcccCCchhhhHhhcCcH
Q 037121 473 LSLEARQIAAATLFYLTSVKGYR-KLIGETPKAIPALVKLIEE-----GTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTV 546 (683)
Q Consensus 473 ~~~e~~~~Aa~~L~~Ls~~~~~~-~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v 546 (683)
.+...++.+++++..++...... ..-.- ..+++.|+.++.+ ....++..++++|...+..-.....+.. .++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-HHH
Confidence 47899999999999998764322 21111 4588889988764 1223444666777766653322222221 234
Q ss_pred HHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHh--c----CChHHHHH----hhccCCChHHHHHHHHHHHHHhc
Q 037121 547 PLLADILASSNRTELITDSLAVLANLAEDIQGTSTILK--T----SALPVIIG----LLQTLTSRAGKEYCVSILLSLCS 616 (683)
Q Consensus 547 ~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~--~----g~i~~Lv~----lL~~~~s~~~ke~A~~~L~~L~~ 616 (683)
..|++.| .+++++++..|+.+|.+||. +.+..+.. . .-++.++. ....- ++.....+..++..+..
T Consensus 543 ~~L~~~l-~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l-~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 543 LKLFEFM-HETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADL-QPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp HHHHHHT-TCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTS-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHh-hcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHH
Confidence 4445545 44568899999999999996 33444432 1 12444444 22223 56677777788777776
Q ss_pred CC
Q 037121 617 NA 618 (683)
Q Consensus 617 ~~ 618 (683)
..
T Consensus 619 ~~ 620 (1023)
T 4hat_C 619 EE 620 (1023)
T ss_dssp TC
T ss_pred hC
Confidence 54
No 190
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=82.37 E-value=28 Score=35.61 Aligned_cols=127 Identities=9% Similarity=0.126 Sum_probs=90.7
Q ss_pred HHHhccCchh-HHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHH
Q 037121 485 LFYLTSVKGY-RKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELIT 563 (683)
Q Consensus 485 L~~Ls~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~ 563 (683)
|.+|...+.+ -...+. .+++..+...++..+....+..+..|...+....-+..-. ...+|.++..+..+++++++.
T Consensus 266 LL~LLmHdSnAIDGFVk-~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVR-SDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHH-TTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceee-cccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCCcceEE
Confidence 4445454444 445555 8899999999999999999999999998876544332222 257899999997788999999
Q ss_pred HHHHHHHHhhCCh-hhHHHHHhcCChHHHHHhh-ccCC-----ChHHHHHHHHHHHH
Q 037121 564 DSLAVLANLAEDI-QGTSTILKTSALPVIIGLL-QTLT-----SRAGKEYCVSILLS 613 (683)
Q Consensus 564 ~al~iL~nLa~~~-~~~~~i~~~g~i~~Lv~lL-~~~~-----s~~~ke~A~~~L~~ 613 (683)
..-+.|.|...+. ..++..+..|+|+.|-..+ +... ....|..|+++++|
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 9999999998754 4566667778899888844 3321 23355666666655
No 191
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=81.29 E-value=20 Score=42.19 Aligned_cols=171 Identities=15% Similarity=0.166 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhh---hcCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHH
Q 037121 474 SLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLI---EEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLA 550 (683)
Q Consensus 474 ~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL---~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv 550 (683)
+...++.+..++..++..-.. .....++.++..+ .++++.++..++++|..++..-........ .+++.|+
T Consensus 462 ~w~~~eaal~al~~i~~~~~~-----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~-~vl~~l~ 535 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDV-----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMIN-SVLPLVL 535 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCS-----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHT-TTHHHHH
T ss_pred chHHHHHHHHHHHHHHhhcCc-----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHH-HHHHHHH
Confidence 778899999999998865321 0123444555443 335678899999999998864222223333 6888888
Q ss_pred HHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChH----HHHHhhccCC-ChHHHHHHHHHHHHHhcCCh-HHHHH
Q 037121 551 DILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALP----VIIGLLQTLT-SRAGKEYCVSILLSLCSNAR-EEVTA 624 (683)
Q Consensus 551 ~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~----~Lv~lL~~~~-s~~~ke~A~~~L~~L~~~~~-~~~~~ 624 (683)
..| . ++.++..|+.+|.+++.. .+..+. +-++ .+..++..+. +...++.+..++..+....+ +....
T Consensus 536 ~~l-~--~~~V~~~A~~al~~l~~~--~~~~l~--p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~ 608 (963)
T 2x19_B 536 HAL-G--NPELSVSSVSTLKKICRE--CKYDLP--PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILK 608 (963)
T ss_dssp HHT-T--CGGGHHHHHHHHHHHHHH--TGGGCT--TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHh-C--CchHHHHHHHHHHHHHHH--HHHHHH--hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 888 3 378999999999999842 222221 2233 3444555432 56788888888888876443 33333
Q ss_pred HHhcCCCcHHHHHHhHh----cC-CHHHHHHHHHHHHHHHH
Q 037121 625 SLAKDPSLMNSLYSLTT----DG-TSQARKKARSLIKILHK 660 (683)
Q Consensus 625 ~l~~~~g~i~~L~~Ll~----~g-~~~~k~~A~~lL~~l~~ 660 (683)
.+. .+++.+...+. +. ++..+.....++..+..
T Consensus 609 ~~~---~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 646 (963)
T 2x19_B 609 NLH---SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSN 646 (963)
T ss_dssp HHH---HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 222 34555555443 32 66666655555555543
No 192
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=80.54 E-value=27 Score=41.75 Aligned_cols=219 Identities=14% Similarity=0.108 Sum_probs=126.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcC-CCCHHHHHHHHHHHHhhccC-----Cc-
Q 037121 379 SRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLS-SPDQCVQENAVAALLKLSKH-----TS- 451 (683)
Q Consensus 379 i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~d~~~q~~A~~aL~nLs~~-----~~- 451 (683)
+..++..+-+++.+.|.+|-..|..+-+. .++...+..+|. +.+..++.-|+.+|.|.... ++
T Consensus 18 l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~----------p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~ 87 (1049)
T 3m1i_C 18 LDQVVSTFYQGSGVQQKQAQEILTKFQDN----------PDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPND 87 (1049)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHS----------TTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHhC----------chHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHH
Confidence 44555555566667777787777766543 245556666664 46889999999999987532 22
Q ss_pred hhhHHhhcCcHHHHHHHHcCCC----CHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHH
Q 037121 452 GKKVIVESGGLKVILKVLKSGL----SLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAI 527 (683)
Q Consensus 452 ~r~~i~~~g~i~~Lv~lL~~~~----~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL 527 (683)
.|..| +...+..+...-..+. +..++...+.++..++..+-. . .=++.++.|+.++. .++.....++.+|
T Consensus 88 ~~~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~---~Wp~ll~~L~~~~~-~~~~~~~~~l~~L 161 (1049)
T 3m1i_C 88 HRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-Q---NWPEFIPELIGSSS-SSVNVCENNMIVL 161 (1049)
T ss_dssp HHHHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-T---TCTTHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-c---cchHHHHHHHHHHc-cChHHHHHHHHHH
Confidence 23333 3333444433221110 245566667777777654221 1 11568889999886 4566677777887
Q ss_pred HHcccCC-----c----hh-----hhHhhc--CcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHH
Q 037121 528 FGLLLSQ-----G----NH-----QKVLDA--GTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVI 591 (683)
Q Consensus 528 ~nLs~~~-----~----n~-----~~iv~~--g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~L 591 (683)
..|+..- + .+ ..+.+. .++..+..++....+..+...++.++.+....-.. ..+.+...++.+
T Consensus 162 ~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l 240 (1049)
T 3m1i_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYETNILELL 240 (1049)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHH
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHH
Confidence 7776321 1 11 112221 12334455554445678888999999887653221 224444445655
Q ss_pred HH-hhccCCChHHHHHHHHHHHHHhcC
Q 037121 592 IG-LLQTLTSRAGKEYCVSILLSLCSN 617 (683)
Q Consensus 592 v~-lL~~~~s~~~ke~A~~~L~~L~~~ 617 (683)
.+ ++. ++..++.|+.+|..+...
T Consensus 241 ~~~~l~---~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 241 STKFMT---SPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HTHHHH---SHHHHHHHHHHHHHHHHC
T ss_pred HHHhCC---CHhHHHHHHHHHHHHHhC
Confidence 53 332 677888888888877754
No 193
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=79.54 E-value=2.6 Score=33.86 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=37.5
Q ss_pred CCccCCCCcccCC-----Cceec--cCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 278 EDFRCPISLELMT-----DPVTV--STGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 278 ~~f~CpIc~~~m~-----dPv~~--~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
..-.|.||.+-.- +|.+. .|+-..||.|.+-=..+|+..||.|+.++.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3458999987642 23332 588899999999888889999999988775
No 194
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=78.97 E-value=23 Score=37.16 Aligned_cols=143 Identities=19% Similarity=0.187 Sum_probs=96.3
Q ss_pred cCcHHHHHHHHcC----CC------CHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHH
Q 037121 459 SGGLKVILKVLKS----GL------SLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIF 528 (683)
Q Consensus 459 ~g~i~~Lv~lL~~----~~------~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~ 528 (683)
.+|+..|+.+|.. +. +......+..+|..+..+......+...++++..|+..|.+..+.++..++..|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 5778888887753 11 2345667888888888887777777776889999999998888999999998888
Q ss_pred HcccCCc--h-hhhHh----------hcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChh---h----HHHHHhcCCh
Q 037121 529 GLLLSQG--N-HQKVL----------DAGTVPLLADILASSNRTELITDSLAVLANLAEDIQ---G----TSTILKTSAL 588 (683)
Q Consensus 529 nLs~~~~--n-~~~iv----------~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~---~----~~~i~~~g~i 588 (683)
.+|..++ + ...+. +..-+..+|+.|..+.+.+....++..+-.+..+++ . |..+... |+
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~-GL 204 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRL-GL 204 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT-TH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-Ch
Confidence 8887654 4 33332 224566788888545667777777777776764332 2 3444454 45
Q ss_pred HHHHHhhccCCChH
Q 037121 589 PVIIGLLQTLTSRA 602 (683)
Q Consensus 589 ~~Lv~lL~~~~s~~ 602 (683)
..+++-|+...++.
T Consensus 205 ~~il~~Lr~~~~~~ 218 (386)
T 2bnx_A 205 HQVLQELREIENED 218 (386)
T ss_dssp HHHHHHHTTCCCHH
T ss_pred HHHHHHHhccCChh
Confidence 55555555432444
No 195
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=76.37 E-value=16 Score=43.62 Aligned_cols=143 Identities=8% Similarity=0.027 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC-----CCHHHHHHHHHHHHhhccCCchhhHHhhcCcHH
Q 037121 389 GTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS-----PDQCVQENAVAALLKLSKHTSGKKVIVESGGLK 463 (683)
Q Consensus 389 ~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-----~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~ 463 (683)
.+|..+..++++++.++..-......-.-..++|.|+.++.. ....++..++++++..+.-=.....+. ..++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HHHHH
Confidence 479999999999999997543322211223567788887753 223344566788887764211111111 12333
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhc-----cCCChHHHHHhhh----cCCHHHHHHHHHHHHHcccCC
Q 037121 464 VILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGE-----TPKAIPALVKLIE----EGTDCGKKNAVVAIFGLLLSQ 534 (683)
Q Consensus 464 ~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~-----~~g~i~~Lv~lL~----~~~~~~~~~A~~aL~nLs~~~ 534 (683)
.|+..+... ++.+...|++++.+||.. .+..+.. ....++.++..+. .-+......+..++..+....
T Consensus 544 ~L~~~l~~~-~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 544 KLFEFMHET-HEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHTTCS-CHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhcC-CHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 344444334 578999999999999963 3333321 1124555554333 235566667777777776654
Q ss_pred c
Q 037121 535 G 535 (683)
Q Consensus 535 ~ 535 (683)
.
T Consensus 621 ~ 621 (1023)
T 4hat_C 621 R 621 (1023)
T ss_dssp C
T ss_pred C
Confidence 4
No 196
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=72.19 E-value=41 Score=40.29 Aligned_cols=221 Identities=13% Similarity=0.092 Sum_probs=133.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC-CCHHHHHHHHHHHHhhccC-----Cc
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS-PDQCVQENAVAALLKLSKH-----TS 451 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~q~~A~~aL~nLs~~-----~~ 451 (683)
.+..++..+-+++.+.|.+|-..|..+-+ ++ ++...+..+|.. .+..++--|+.+|.+.... +.
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~ 98 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR 98 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHc-Cc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence 45667777777787777777766655543 33 334445555544 6899999999999887542 22
Q ss_pred hhhHHhhcCcHHHHHHHHcCC----CCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHH
Q 037121 452 GKKVIVESGGLKVILKVLKSG----LSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAI 527 (683)
Q Consensus 452 ~r~~i~~~g~i~~Lv~lL~~~----~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL 527 (683)
....-++...+..+...-.++ .+...+...+.++..+...+-. .. =++.++-|+.++.. ++......+..|
T Consensus 99 e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P-~~---Wp~fi~dLv~~~~~-~~~~~~~~L~IL 173 (1073)
T 3gjx_A 99 NQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWP-KH---WPTFISDIVGASRT-SESLCQNNMVIL 173 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTT-TT---CTTHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhCh-hh---ccHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 222233444555555543321 1345555666666666543211 01 15678888887754 455666777777
Q ss_pred HHcccC--C---c----h-----hhhHhhc--CcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHH
Q 037121 528 FGLLLS--Q---G----N-----HQKVLDA--GTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVI 591 (683)
Q Consensus 528 ~nLs~~--~---~----n-----~~~iv~~--g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~L 591 (683)
..|+.. + + . +..+.+. .+++.+..+|....++.+...++.+|....+.-. -..+.+.+.++.|
T Consensus 174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~-i~~i~~~~ll~~L 252 (1073)
T 3gjx_A 174 KLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP-LGYIFETKLISTL 252 (1073)
T ss_dssp HHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSSSHHHHH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC-HHHhccchHHHHH
Confidence 777653 1 0 1 1122222 1233333445445678888999999999987543 2456677777877
Q ss_pred -HHhhccCCChHHHHHHHHHHHHHhcC
Q 037121 592 -IGLLQTLTSRAGKEYCVSILLSLCSN 617 (683)
Q Consensus 592 -v~lL~~~~s~~~ke~A~~~L~~L~~~ 617 (683)
..+|. ++..++.|+.+|..+...
T Consensus 253 ~~~~L~---~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 253 IYKFLN---VPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHTSS---SHHHHHHHHHHHHHHHHS
T ss_pred HHHhcC---ChHHHHHHHHHHHHHHhc
Confidence 46664 678999999999998764
No 197
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=71.25 E-value=19 Score=43.06 Aligned_cols=206 Identities=13% Similarity=0.107 Sum_probs=115.4
Q ss_pred CCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC------chhHHHhhccCC
Q 037121 430 SPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSV------KGYRKLIGETPK 503 (683)
Q Consensus 430 s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~------~~~~~~i~~~~g 503 (683)
+++...+..|-..|.++... .++...+..+|.++.+..+|..|+-+|.+.... .+.+..|-. .
T Consensus 27 ~p~~~~r~~Ae~~L~~~~~~---------p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~--~ 95 (1049)
T 3m1i_C 27 QGSGVQQKQAQEILTKFQDN---------PDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRN--F 95 (1049)
T ss_dssp HCCHHHHHHHHHHHHHHHHS---------TTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH--H
T ss_pred CCChHHHHHHHHHHHHHHhC---------chHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHH--H
Confidence 45556677777777766543 345666677776655889999999999987542 223333322 2
Q ss_pred ChHHHHHhhhcC-----CHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCC---
Q 037121 504 AIPALVKLIEEG-----TDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAED--- 575 (683)
Q Consensus 504 ~i~~Lv~lL~~~-----~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~--- 575 (683)
.+..+...-.++ +..++...+.++..++..+--. -..+.++.|+..+ + .++...+.++.+|..|+..
T Consensus 96 ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~---~Wp~ll~~L~~~~-~-~~~~~~~~~l~~L~~l~eev~~ 170 (1049)
T 3m1i_C 96 VVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSS-S-SSVNVCENNMIVLKLLSEEVFD 170 (1049)
T ss_dssp HHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHH-T-TCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHH-c-cChHHHHHHHHHHHHHHHHHHH
Confidence 333333221111 2456667777777776542110 1236888899998 4 4556677888888888731
Q ss_pred --h----hhH-----HHHHhc-C-ChHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhc
Q 037121 576 --I----QGT-----STILKT-S-ALPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTD 642 (683)
Q Consensus 576 --~----~~~-----~~i~~~-g-~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~ 642 (683)
. ..| ..+.+. . .+..+..++....++..+..++.++.+....-+.. .+.. ..+++.+.+.+.
T Consensus 171 ~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~---~~~~-~~ll~~l~~~~l- 245 (1049)
T 3m1i_C 171 FSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYR---YIYE-TNILELLSTKFM- 245 (1049)
T ss_dssp SCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTH---HHHS-SSHHHHHHTHHH-
T ss_pred hcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHH---HHhh-hhHHHHHHHHhC-
Confidence 0 011 223221 1 12333445554435678888999887766543211 1232 456666653222
Q ss_pred CCHHHHHHHHHHHH
Q 037121 643 GTSQARKKARSLIK 656 (683)
Q Consensus 643 g~~~~k~~A~~lL~ 656 (683)
+++..+..|...+.
T Consensus 246 ~~~~~~~~a~~~L~ 259 (1049)
T 3m1i_C 246 TSPDTRAITLKCLT 259 (1049)
T ss_dssp HSHHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHH
Confidence 25666666666544
No 198
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=69.20 E-value=15 Score=32.86 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-CchhhHHHHhcCChHHHHhhcCC------CCHHHHHHHHHHHHhhcc
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKS-NIFNRSCIVESGAIPPLLNLLSS------PDQCVQENAVAALLKLSK 448 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s------~d~~~q~~A~~aL~nLs~ 448 (683)
+..+..|.++|.++++.+|..|+..|-.+.+. +......++...++.-|+.++.. .+..++..++..+..-+.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 44677888899999999999999999999885 34556677777888899998863 478999999988877763
No 199
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=66.15 E-value=2.7 Score=34.19 Aligned_cols=50 Identities=10% Similarity=0.038 Sum_probs=37.8
Q ss_pred CCCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCC
Q 037121 276 NPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNT 327 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~ 327 (683)
.-..+.|-.|-.-.+. .+..+.|.+|+.|+...+.. ...||+|+.+|..+
T Consensus 25 ~~G~~nCKsCWf~~k~-LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKG-LVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTK 74 (99)
T ss_dssp CSCCCCCCSSCSCCSS-EEECSSCEEEHHHHHHTCSS-SSEETTTTEECCCC
T ss_pred ccCcccChhhccccCC-eeeecchhhHHHHHHHHHhh-ccCCcccCCcCCcc
Confidence 3456788888655553 34456799999999987765 77899999998764
No 200
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=65.84 E-value=9.5 Score=29.90 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=30.8
Q ss_pred CCCCCccCCCCcccCCCceec--c--CcccccHHHHHHHHHh
Q 037121 275 LNPEDFRCPISLELMTDPVTV--S--TGQTYDRSSIQKWLKA 312 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~~--~--cght~~r~cI~~w~~~ 312 (683)
.....++|.+|.+-+.|.-.+ | .+|.||-.|-...++.
T Consensus 11 ~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 11 ANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 446678999999999987544 2 4799999998888876
No 201
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=64.97 E-value=14 Score=33.58 Aligned_cols=72 Identities=8% Similarity=-0.001 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-CchhhHHHHhcCChHHHHhhcCC-CCHHHHHHHHHHHHhhc
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKS-NIFNRSCIVESGAIPPLLNLLSS-PDQCVQENAVAALLKLS 447 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s-~d~~~q~~A~~aL~nLs 447 (683)
+..+..|.++|.++++.+|..|+..|-.+.+. +......++...++.-|+.++.. .++.++..++..+..-+
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 34667888899999999999999999999885 34455566666778888888865 67899999988887765
No 202
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=62.94 E-value=64 Score=32.39 Aligned_cols=136 Identities=11% Similarity=0.178 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHc-CCCCHHHHHHHHHHHHHhccCchh-HHHhhc-cCCChHHH
Q 037121 432 DQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLK-SGLSLEARQIAAATLFYLTSVKGY-RKLIGE-TPKAIPAL 508 (683)
Q Consensus 432 d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~e~~~~Aa~~L~~Ls~~~~~-~~~i~~-~~g~i~~L 508 (683)
|.+.-+.|+..|..+|.+=.-..+|++.. .+.|-.++. .......++.|++++.....+... ...|.. -+..+..+
T Consensus 41 D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 41 DIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 55667888899999998877777777532 344444442 223678899999999887775543 333322 24455555
Q ss_pred HHhhhc-------CCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCC--ChhHHHHHHHHHHHhh
Q 037121 509 VKLIEE-------GTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSN--RTELITDSLAVLANLA 573 (683)
Q Consensus 509 v~lL~~-------~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~--~~~~~~~al~iL~nLa 573 (683)
..-|.. .....++.-+.+|-.|..++.. + ....+..|.+++ ... ++.++..++.++..+-
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F-~~~~m~~L~~ly-~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---L-PIYSTVVLQNVY-ERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C---CCHHHHHHHH-HHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---h-hhccHHHHHHHH-ccCCCCHHHHHHHHHHHHHHc
Confidence 444333 2456778888899999887632 2 245678888888 445 7889999998888764
No 203
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=62.25 E-value=11 Score=33.37 Aligned_cols=74 Identities=14% Similarity=0.195 Sum_probs=53.2
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHh-----cC---CHHHHHHHHHHHHHHH
Q 037121 588 LPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTT-----DG---TSQARKKARSLIKILH 659 (683)
Q Consensus 588 i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~-----~g---~~~~k~~A~~lL~~l~ 659 (683)
+..|.+=|... ++..+-.|+.+|-.||.++++.++..+.+....|..|..+-. .| ...+|.+|..++.+|.
T Consensus 51 m~~L~kRL~~k-~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 51 SEFILKRLDNK-SPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHTSS-SHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCC-CcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 34667766666 888999999999999999988888888874433333333322 12 1457889999999987
Q ss_pred Hhh
Q 037121 660 KFI 662 (683)
Q Consensus 660 ~~~ 662 (683)
...
T Consensus 130 d~~ 132 (140)
T 1vdy_A 130 SEE 132 (140)
T ss_dssp CCS
T ss_pred CcC
Confidence 643
No 204
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=61.14 E-value=90 Score=33.47 Aligned_cols=120 Identities=17% Similarity=0.202 Sum_probs=77.2
Q ss_pred cCCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHH
Q 037121 514 EGTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIG 593 (683)
Q Consensus 514 ~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~ 593 (683)
.++...++-|+..+.....+-... +..++..++.+. .+.+..++..|+.-|..+|.. +....+ +..|++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l----~~~Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPEL----ADSAINAQLDLC-EDEDVSIRRQAIKELPQFATG-ENLPRV-----ADILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGG----HHHHHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT-TCHHHH-----HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHH-hcccHHHHHHHHHhhHHHhhh-hhhhhH-----HHHHHH
Confidence 456777777777777665433221 113567788888 777788888888888888876 444433 347888
Q ss_pred hhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHH
Q 037121 594 LLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLI 655 (683)
Q Consensus 594 lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL 655 (683)
+|.+. ++......-.+|..|-..++... +..|+.-+.+|++.+|+++...|
T Consensus 108 lLqtd-d~~E~~~V~~sL~sllk~Dpk~t----------l~~lf~~i~~~~e~~Rer~lkFi 158 (507)
T 3u0r_A 108 LLQTD-DSAEFNLVNNALLSIFKMDAKGT----------LGGLFSQILQGEDIVRERAIKFL 158 (507)
T ss_dssp HTTCC-CHHHHHHHHHHHHHHHHHCHHHH----------HHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHhcc-chHHHHHHHHHHHHHHhcChHHH----------HHHHHHHHcccchHHHHHHHHHH
Confidence 88876 66666666677777666553322 33444455557777776654433
No 205
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=61.09 E-value=17 Score=33.35 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-chhhHHHHhcCChHHHHhhcCC------CCHHHHHHHHHHHHhhcc
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSN-IFNRSCIVESGAIPPLLNLLSS------PDQCVQENAVAALLKLSK 448 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s------~d~~~q~~A~~aL~nLs~ 448 (683)
+..+..|.++|.++++.+|..|+..|-.+.+.. ......++...++.-|+.++.. .+..++..++..+..-+.
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 346678889999999999999999999998853 4455667777888889998862 468999999998877763
No 206
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=60.82 E-value=1.4e+02 Score=36.12 Aligned_cols=220 Identities=12% Similarity=0.034 Sum_probs=121.5
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhc--CCCCHHHHHHHHHHHHhhccC-----
Q 037121 379 SRFLARRLFFG--TNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLL--SSPDQCVQENAVAALLKLSKH----- 449 (683)
Q Consensus 379 i~~Lv~~L~s~--~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL--~s~d~~~q~~A~~aL~nLs~~----- 449 (683)
+..++..+-++ +.+.|.+|-..|..+-+.. .+...+...| .+.+..++.-|+.+|.|....
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l 82 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGM 82 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 33444444343 6667888887777765432 1233333333 456889999999999887522
Q ss_pred Cch-hhHHhhcCcHHHHHHHHcCC--CCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHH
Q 037121 450 TSG-KKVIVESGGLKVILKVLKSG--LSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVA 526 (683)
Q Consensus 450 ~~~-r~~i~~~g~i~~Lv~lL~~~--~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~a 526 (683)
++. |..| +...+..+...-... ....++...+.++..++..+-. . .=++.++.|+.++.+ +......++.+
T Consensus 83 ~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~---~Wp~ll~~L~~~~~~-~~~~~e~~L~i 156 (1204)
T 3a6p_A 83 SRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-Q---HWPDMLIELDTLSKQ-GETQTELVMFI 156 (1204)
T ss_dssp CHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-T---TCTTHHHHHHHHHHT-CHHHHHHHHHH
T ss_pred CHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-c---cchHHHHHHHHHhcC-CHHHHHHHHHH
Confidence 222 3333 333344333221110 2566777777788777654322 1 115788889988866 55567778888
Q ss_pred HHHcccC---Cc----hhh-----hHhhc--CcHHHHHHHHccC------------------CChhHHHHHHHHHHHhhC
Q 037121 527 IFGLLLS---QG----NHQ-----KVLDA--GTVPLLADILASS------------------NRTELITDSLAVLANLAE 574 (683)
Q Consensus 527 L~nLs~~---~~----n~~-----~iv~~--g~v~~Lv~lL~~~------------------~~~~~~~~al~iL~nLa~ 574 (683)
|..|+.. .+ .+. .+.+. .+++.+..+|... .+..+...++.++.+...
T Consensus 157 L~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~ 236 (1204)
T 3a6p_A 157 LLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYID 236 (1204)
T ss_dssp HHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHh
Confidence 8888643 11 111 11211 1233333344210 123455666776665554
Q ss_pred ChhhHHHHHhcC--ChHHHHHhhccCCChHHHHHHHHHHHHHhcCC
Q 037121 575 DIQGTSTILKTS--ALPVIIGLLQTLTSRAGKEYCVSILLSLCSNA 618 (683)
Q Consensus 575 ~~~~~~~i~~~g--~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~ 618 (683)
.-. ...+.+.. .++.+..++. ++..+..|+.+|..++...
T Consensus 237 Wi~-~~~i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 237 WVS-MSHITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp TSC-HHHHHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCC
T ss_pred ccC-HHHHHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCC
Confidence 322 12333433 3556665554 5678999999999998754
No 207
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=60.81 E-value=1.8 Score=28.37 Aligned_cols=15 Identities=20% Similarity=0.523 Sum_probs=12.0
Q ss_pred CccCCCCcccCCCce
Q 037121 279 DFRCPISLELMTDPV 293 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv 293 (683)
-|.||+|+..+..|-
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 489999998887763
No 208
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=60.61 E-value=2.6e+02 Score=33.00 Aligned_cols=210 Identities=10% Similarity=0.020 Sum_probs=123.8
Q ss_pred CHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCCC---CHHHHHHHHHHHHhhcc--CCc----hhhHHhhcC
Q 037121 390 TNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSSP---DQCVQENAVAALLKLSK--HTS----GKKVIVESG 460 (683)
Q Consensus 390 ~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~---d~~~q~~A~~aL~nLs~--~~~----~r~~i~~~g 460 (683)
+++.|.+|-..|..+-+. + ++......+|..+ +..++--|+.+|.+... .++ .+.. +...
T Consensus 21 d~~~r~~A~~~L~~~q~s-p---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~-lr~~ 89 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS-S---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQM-IRDS 89 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS-T---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHHHHcC-h---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHH-HHHH
Confidence 678888888777777653 2 2345556667553 78999999988876543 222 2222 2333
Q ss_pred cHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCH-HHHHHHHHHHHHcccC----C-
Q 037121 461 GLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTD-CGKKNAVVAIFGLLLS----Q- 534 (683)
Q Consensus 461 ~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~A~~aL~nLs~~----~- 534 (683)
.+..+...-..+...-++...+.++..+....-. . .=++.++.|+.++..++. ......+.+|..++.. .
T Consensus 90 ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p-~---~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~ 165 (980)
T 3ibv_A 90 VWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP-S---NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLV 165 (980)
T ss_dssp HHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT-T---TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc-c---cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhccc
Confidence 3443333100122456777777777777653211 1 115688888888876544 3444555555543321 0
Q ss_pred --c----h-----hhhHhhc---CcHHHHHHHHcc---CCChhHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhcc
Q 037121 535 --G----N-----HQKVLDA---GTVPLLADILAS---SNRTELITDSLAVLANLAEDIQGTSTILKTSALPVIIGLLQT 597 (683)
Q Consensus 535 --~----n-----~~~iv~~---g~v~~Lv~lL~~---~~~~~~~~~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~ 597 (683)
+ . +..+.+. .+++....+|.. ..++.++..++.+|......-. ...+.+.+.++.+.+++.
T Consensus 166 ~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~- 243 (980)
T 3ibv_A 166 LKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQ- 243 (980)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTT-
T ss_pred ccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcC-
Confidence 0 0 1122221 124444445522 3577888899999998876422 345556566888888876
Q ss_pred CCChHHHHHHHHHHHHHhcCC
Q 037121 598 LTSRAGKEYCVSILLSLCSNA 618 (683)
Q Consensus 598 ~~s~~~ke~A~~~L~~L~~~~ 618 (683)
++..++.|+.+|..+....
T Consensus 244 --~~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 244 --IEELRCAACETMTEIVNKK 262 (980)
T ss_dssp --SHHHHHHHHHHHHHHHHSC
T ss_pred --ChHHHHHHHHHHHHHHHcC
Confidence 5789999999999887765
No 209
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=59.43 E-value=56 Score=31.93 Aligned_cols=136 Identities=15% Similarity=0.148 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHh-hcCCCCHHHHHHHHHHHHhhccCCc-hhhHHhhcCcHHHHHHHHc
Q 037121 393 EKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLN-LLSSPDQCVQENAVAALLKLSKHTS-GKKVIVESGGLKVILKVLK 470 (683)
Q Consensus 393 ~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~-lL~s~d~~~q~~A~~aL~nLs~~~~-~r~~i~~~g~i~~Lv~lL~ 470 (683)
.+.-++..+|.++.+.+.+ +.+..++. .+.+.++..+.-+++++.|+-.++. ++..+........+++.+.
T Consensus 70 ~~fP~lDllRl~~~~~~~~-------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~ 142 (253)
T 3gae_A 70 IKTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETID 142 (253)
T ss_dssp CCHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSC
T ss_pred ccchHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHH
Confidence 3556777888877754432 22222222 2335678899999999999999888 6776665444555555543
Q ss_pred CC-------CCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhc---------CCHHHHHHHHHHHHHcccCC
Q 037121 471 SG-------LSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEE---------GTDCGKKNAVVAIFGLLLSQ 534 (683)
Q Consensus 471 ~~-------~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~---------~~~~~~~~A~~aL~nLs~~~ 534 (683)
.. .+..++..++.+++|++........ . ......+++.+.. .+.+...-++.||.+|...+
T Consensus 143 ~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~--~-~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 143 TEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--D-LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp SCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS--C-TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc--h-HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 21 1445677888888999874221000 1 2344555555542 36788889999999998755
Q ss_pred chhh
Q 037121 535 GNHQ 538 (683)
Q Consensus 535 ~n~~ 538 (683)
+...
T Consensus 220 ~~~~ 223 (253)
T 3gae_A 220 PTLR 223 (253)
T ss_dssp GGGG
T ss_pred HHHH
Confidence 5433
No 210
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=59.07 E-value=1.8e+02 Score=34.78 Aligned_cols=213 Identities=11% Similarity=0.109 Sum_probs=125.1
Q ss_pred hHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC------chh
Q 037121 421 IPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSV------KGY 494 (683)
Q Consensus 421 i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~------~~~ 494 (683)
+..++..+.+++.+.+..|-..|..+-.+++ +...+..+|.++.+..+|-.|+.+|.+.... .+.
T Consensus 30 Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~ 100 (1073)
T 3gjx_A 30 LDNVVNCLYHGEGAQQRMAQEVLTHLKEHPD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQ 100 (1073)
T ss_dssp HHHHHHTTTCSSHHHHHHHHHHHHTSSCCSC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHH
Confidence 4556666666777778888888877765543 4444445565555889999999999887652 223
Q ss_pred HHHhhccCCChHHHHHhhhc-----CCHHHHHHHHHHHHHcccC--CchhhhHhhcCcHHHHHHHHccCCChhHHHHHHH
Q 037121 495 RKLIGETPKAIPALVKLIEE-----GTDCGKKNAVVAIFGLLLS--QGNHQKVLDAGTVPLLADILASSNRTELITDSLA 567 (683)
Q Consensus 495 ~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~A~~aL~nLs~~--~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~ 567 (683)
+..+- ...+..+.....+ .++..+...+.++..+... ++. ..+.++-++.++. .++...+..+.
T Consensus 101 ~~~LR--~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-----Wp~fi~dLv~~~~--~~~~~~~~~L~ 171 (1073)
T 3gjx_A 101 CEGIK--KYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-----WPTFISDIVGASR--TSESLCQNNMV 171 (1073)
T ss_dssp HHHHH--HHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHH--HCHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-----ccHHHHHHHHHhC--CCHHHHHHHHH
Confidence 33332 2233344333221 2345555666666666543 221 3467778888873 24566777888
Q ss_pred HHHHhhCC--h------------hhHHHHHhcCChHHHH----HhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcC
Q 037121 568 VLANLAED--I------------QGTSTILKTSALPVII----GLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKD 629 (683)
Q Consensus 568 iL~nLa~~--~------------~~~~~i~~~g~i~~Lv----~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~ 629 (683)
+|..|+.. . ..+..+.+. ++.++ .+|....++.....++.+|..+...-+- ..+..
T Consensus 172 IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i---~~i~~- 245 (1073)
T 3gjx_A 172 ILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL---GYIFE- 245 (1073)
T ss_dssp HHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT---HHHHS-
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH---HHhcc-
Confidence 88888742 0 012233332 34443 3454443677777888888888776432 23444
Q ss_pred CCcHHHH-HHhHhcCCHHHHHHHHHHHHHHH
Q 037121 630 PSLMNSL-YSLTTDGTSQARKKARSLIKILH 659 (683)
Q Consensus 630 ~g~i~~L-~~Ll~~g~~~~k~~A~~lL~~l~ 659 (683)
.++++.| ..++ +++..+..|...|..+-
T Consensus 246 ~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv 274 (1073)
T 3gjx_A 246 TKLISTLIYKFL--NVPMFRNVSLKCLTEIA 274 (1073)
T ss_dssp SSHHHHHHHHTS--SSHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhc--CChHHHHHHHHHHHHHH
Confidence 6778877 3555 46788888888666543
No 211
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=56.08 E-value=2.5e+02 Score=33.47 Aligned_cols=169 Identities=13% Similarity=0.117 Sum_probs=92.6
Q ss_pred hHHHHhhcCC----CCHHHHHHHHHHHHhhc----cCCchh-hHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccC
Q 037121 421 IPPLLNLLSS----PDQCVQENAVAALLKLS----KHTSGK-KVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSV 491 (683)
Q Consensus 421 i~~Lv~lL~s----~d~~~q~~A~~aL~nLs----~~~~~r-~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~ 491 (683)
+..+..++.+ .++.++..|+-+++.|. .+...+ ..++ .-....+.+.+.++ +.+-+..+..+|.|+-.
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~-~~~~~~~~LkaLGN~g~- 469 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRA-KEEEIVLALKALGNAGQ- 469 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcC-ChHHHHHHHHHhhccCC-
Confidence 4455566665 45666666776666664 222221 1111 11233333444566 67777888888888854
Q ss_pred chhHHHhhccCCChHHHHHhhhc-------CCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHcc-CCChhHHH
Q 037121 492 KGYRKLIGETPKAIPALVKLIEE-------GTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILAS-SNRTELIT 563 (683)
Q Consensus 492 ~~~~~~i~~~~g~i~~Lv~lL~~-------~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~-~~~~~~~~ 563 (683)
...++.|.+++.. ...+++..|++||.++..... +. +-+.|++++.+ ..+.+++.
T Consensus 470 ----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p---~~----v~~il~~i~~n~~e~~EvRi 532 (1056)
T 1lsh_A 470 ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP---RK----VQEIVLPIFLNVAIKSELRI 532 (1056)
T ss_dssp ----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH---HH----HHHHHHHHHHCTTSCHHHHH
T ss_pred ----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch---HH----HHHHHHHHhcCCCCChHHHH
Confidence 3467777777642 235788889999998874321 11 23456677632 24566766
Q ss_pred HHHHHHHHhhCChhhHHHHHhcCChHHHHHhhccCCChHHHHHHHHHHHHHhcCC
Q 037121 564 DSLAVLANLAEDIQGTSTILKTSALPVIIGLLQTLTSRAGKEYCVSILLSLCSNA 618 (683)
Q Consensus 564 ~al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~ 618 (683)
.|+.+|-. .+|. ...+..++..+....+..+.-.....|.+++...
T Consensus 533 aA~~~Lm~--t~P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 533 RSCIVFFE--SKPS-------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHH--TCCC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHH--HCcC-------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 66665542 2221 1123455555554335555555666666666544
No 212
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=55.91 E-value=20 Score=31.73 Aligned_cols=72 Identities=14% Similarity=0.031 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-chhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhc
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSN-IFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLS 447 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs 447 (683)
+..+..|.++|.++++.+|..|+..|-.+.+.. ......++...++.-|+.++...++.++...+..+...+
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 346678888999999999999999998888743 333445555567777788887788999999988887766
No 213
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=55.78 E-value=1.5e+02 Score=35.48 Aligned_cols=130 Identities=14% Similarity=0.102 Sum_probs=83.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHhhcCC-------CCHHHHHHHHHHHHhhccCC
Q 037121 378 MSRFLARRLFFGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLNLLSS-------PDQCVQENAVAALLKLSKHT 450 (683)
Q Consensus 378 ~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-------~d~~~q~~A~~aL~nLs~~~ 450 (683)
....|.+.+.+++.+.+..+++.|+|+.. .+.++.|..++.. ....++..|+.+|.+++...
T Consensus 441 i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~ 509 (1056)
T 1lsh_A 441 LHDLLSQSSDRAKEEEIVLALKALGNAGQ-----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD 509 (1056)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTC-----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhhccCC-----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc
Confidence 45566677788888888888888888864 1356778887742 24678899999999998542
Q ss_pred chhhHHhhcCcHHHHHHHHcC-CCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhc-CCHHHHHHHHHHHH
Q 037121 451 SGKKVIVESGGLKVILKVLKS-GLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEE-GTDCGKKNAVVAIF 528 (683)
Q Consensus 451 ~~r~~i~~~g~i~~Lv~lL~~-~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~ 528 (683)
.. -+-+.++.++.+ ..+.|+|..|..+|+.-.-... .+..++..+.. .+..+.......|.
T Consensus 510 p~-------~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~~~----------~l~~ia~~l~~E~~~QV~sfv~S~l~ 572 (1056)
T 1lsh_A 510 PR-------KVQEIVLPIFLNVAIKSELRIRSCIVFFESKPSVA----------LVSMVAVRLRREPNLQVASFVYSQMR 572 (1056)
T ss_dssp HH-------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCCHH----------HHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred hH-------HHHHHHHHHhcCCCCChHHHHHHHHHHHHHCcCHH----------HHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 21 123445666643 4478999988888876543322 23333444433 45566666666666
Q ss_pred HcccCCc
Q 037121 529 GLLLSQG 535 (683)
Q Consensus 529 nLs~~~~ 535 (683)
+++....
T Consensus 573 sla~s~~ 579 (1056)
T 1lsh_A 573 SLSRSSN 579 (1056)
T ss_dssp HHTTCCS
T ss_pred HHHhcCC
Confidence 6665543
No 214
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=55.19 E-value=74 Score=30.73 Aligned_cols=137 Identities=18% Similarity=0.139 Sum_probs=87.2
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHhcCchhhHHHHhcCChHHHHh-hcCCCCHHHHHHHHHHHHhhcc-CCchhhH
Q 037121 379 SRFLARRLF-FGTNEEKNKAAYEIRLLAKSNIFNRSCIVESGAIPPLLN-LLSSPDQCVQENAVAALLKLSK-HTSGKKV 455 (683)
Q Consensus 379 i~~Lv~~L~-s~~~~~~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv~-lL~s~d~~~q~~A~~aL~nLs~-~~~~r~~ 455 (683)
+..+...|- +...++|.-|+..|..+ .. ....++.+.. +-..++=.+++.+..++..++. ....
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~~---------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-SK---------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-TT---------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-cC---------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 344555554 44567788888766555 21 1224455555 4445778999999999998874 2221
Q ss_pred HhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCc
Q 037121 456 IVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQG 535 (683)
Q Consensus 456 i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 535 (683)
..++.+.....++ +..+|..|...+.--+.....+ ....-++|.|-.+..+++.-+++..+++|..++....
T Consensus 139 ----~~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 139 ----KALPIIDEWLKSS-NLHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ----TTHHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred ----HHHHHHHHHhcCC-CHHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 1567777788888 8999998887765423221111 1101245666666677778899999999999998654
Q ss_pred h
Q 037121 536 N 536 (683)
Q Consensus 536 n 536 (683)
.
T Consensus 211 d 211 (240)
T 3l9t_A 211 D 211 (240)
T ss_dssp H
T ss_pred H
Confidence 3
No 215
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=55.17 E-value=18 Score=32.86 Aligned_cols=70 Identities=7% Similarity=0.008 Sum_probs=55.9
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch--hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Q 037121 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG--KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLT 489 (683)
Q Consensus 420 ~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~--r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls 489 (683)
++..|.+-|.+.++.+|..|+.+|-.+..+... ...|.....++.++.++....+..+++.+...+..-+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 445777788899999999999999999887554 5667778889999999986447888888888776654
No 216
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=53.81 E-value=27 Score=30.82 Aligned_cols=72 Identities=11% Similarity=0.109 Sum_probs=55.4
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcCCHHHHHHHHHHHHHHHHh
Q 037121 588 LPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 588 i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g~~~~k~~A~~lL~~l~~~ 661 (683)
+..|.+-|.++ ++..+-.|+.+|-.+..+.+......+.. ...+.-|+.++...++.+|+++..++......
T Consensus 44 ~rai~Krl~~~-n~~~ql~AL~LLe~~vkNcG~~f~~evas-~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 44 LRSIMRRVNHK-DPHVAMQALTLLGACVSNCGKIFHLEVCS-RDFASEVSNVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHSS-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-ChHHHHHHHHHHHHHHHhcCHHHHHHHhh-HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 45666767777 88899999998888877776666655654 55777888888888999999999988865543
No 217
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=53.31 E-value=3.6 Score=25.67 Aligned_cols=16 Identities=31% Similarity=0.411 Sum_probs=12.6
Q ss_pred CCccCCCCcccCCCce
Q 037121 278 EDFRCPISLELMTDPV 293 (683)
Q Consensus 278 ~~f~CpIc~~~m~dPv 293 (683)
..|.||+|+..|-|+-
T Consensus 2 ~k~~CpvCk~q~Pd~k 17 (28)
T 2jvx_A 2 SDFCCPKCQYQAPDMD 17 (28)
T ss_dssp CCEECTTSSCEESSHH
T ss_pred CcccCccccccCcChH
Confidence 4688999998888863
No 218
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=52.57 E-value=76 Score=30.66 Aligned_cols=143 Identities=11% Similarity=-0.007 Sum_probs=91.7
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhccCchhHHHhhcc
Q 037121 422 PPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTSVKGYRKLIGET 501 (683)
Q Consensus 422 ~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~ 501 (683)
+....|..++.-+++.-|+.+|+.+ .. ....++.+...+..+.+..+++.++.++..++... ..
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~~--------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~------~p- 137 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-SK--------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKI------EY- 137 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-TT--------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHH------CT-
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-cC--------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhc------CH-
Confidence 4445566667778999999988877 21 12245555553444448999999999998887411 11
Q ss_pred CCChHHHHHhhhcCCHHHHHHHHHHHHHcccCCchhhhHhhcC-cHHHHHHHHccCCChhHHHHHHHHHHHhhC-ChhhH
Q 037121 502 PKAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGNHQKVLDAG-TVPLLADILASSNRTELITDSLAVLANLAE-DIQGT 579 (683)
Q Consensus 502 ~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g-~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~-~~~~~ 579 (683)
...++.+.....+++..+++.|...+.--+.....+ .+.. +++.|-.+. .+++.-++......|..++. +|+-.
T Consensus 138 e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~-~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 138 KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLK-EDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTT-TCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 226788889999999999998888875433221110 0111 233333333 66777888888889999986 66655
Q ss_pred HHHHh
Q 037121 580 STILK 584 (683)
Q Consensus 580 ~~i~~ 584 (683)
..+++
T Consensus 214 ~~~~~ 218 (240)
T 3l9t_A 214 KIELK 218 (240)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 219
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=48.20 E-value=18 Score=34.88 Aligned_cols=71 Identities=10% Similarity=0.133 Sum_probs=57.6
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch--hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Q 037121 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG--KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLTS 490 (683)
Q Consensus 420 ~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~--r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls~ 490 (683)
++..|.+-|.+.++.+|..|+.+|-.+..+... ...|.....++.|+.+++...+.++++.++.++...+.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 456788888899999999999999999877654 56677777888888888776578899998888877653
No 220
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=48.06 E-value=51 Score=29.36 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-chhhHHHHhcCChHHHHhhcCC------CCHHHHHHHHHHHHhhcc
Q 037121 376 KLMSRFLARRLFFGTNEEKNKAAYEIRLLAKSN-IFNRSCIVESGAIPPLLNLLSS------PDQCVQENAVAALLKLSK 448 (683)
Q Consensus 376 ~~~i~~Lv~~L~s~~~~~~~~a~~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s------~d~~~q~~A~~aL~nLs~ 448 (683)
+..+..|.++|.+.++.+|..|+..|-.+.+.. ......++...++.-|+.++.. .+..++...+..+..-+.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 346678889999999999999999999888743 3345566667788889988863 578999999988887763
No 221
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=47.40 E-value=63 Score=34.10 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHhcCChHHHH-hhcCCCCHHHHHHHHHHHHhhccCCch-hhHHhhcCcHHHHHHHHcC
Q 037121 394 KNKAAYEIRLLAKSNIFNRSCIVESGAIPPLL-NLLSSPDQCVQENAVAALLKLSKHTSG-KKVIVESGGLKVILKVLKS 471 (683)
Q Consensus 394 ~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv-~lL~s~d~~~q~~A~~aL~nLs~~~~~-r~~i~~~g~i~~Lv~lL~~ 471 (683)
+.-++..+|.+..+.+.+ +.+-.++ ..+.+..+..+.-+++++.|+-.++.. +..+........+++.+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 566888888887754432 1222222 233356788999999999999988874 4444333345666665532
Q ss_pred CC-------CHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhh---------cCCHHHHHHHHHHHHHcccCCc
Q 037121 472 GL-------SLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIE---------EGTDCGKKNAVVAIFGLLLSQG 535 (683)
Q Consensus 472 ~~-------~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---------~~~~~~~~~A~~aL~nLs~~~~ 535 (683)
.. +..++..++.+++|++....... .. ...+..+++.+. ..+.+...-++.||.+|....+
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~--~~-~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGN--SD-LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC--SC-TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhccc--ch-HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 11 34577788888899987432100 01 234456666665 3477899999999999986544
Q ss_pred h
Q 037121 536 N 536 (683)
Q Consensus 536 n 536 (683)
.
T Consensus 393 ~ 393 (425)
T 3pst_A 393 T 393 (425)
T ss_dssp H
T ss_pred H
Confidence 3
No 222
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=45.20 E-value=8.5 Score=31.50 Aligned_cols=13 Identities=15% Similarity=0.697 Sum_probs=11.9
Q ss_pred cccHHHHHHHHHh
Q 037121 300 TYDRSSIQKWLKA 312 (683)
Q Consensus 300 t~~r~cI~~w~~~ 312 (683)
-|||.|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999986
No 223
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=44.98 E-value=5.9 Score=32.40 Aligned_cols=41 Identities=22% Similarity=0.508 Sum_probs=25.1
Q ss_pred CccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 279 DFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
+..||.|...|.. .-|+.+|..|=.. |.. ...||.|+++|.
T Consensus 32 ~~~CP~Cq~eL~~----~g~~~hC~~C~~~-f~~-~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQ----DNGHARCRSCGEF-IEM-KALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEE----ETTEEEETTTCCE-EEE-EEECTTTCSBCE
T ss_pred cccCccCCCccee----cCCEEECccccch-hhc-cccCcchhhHHH
Confidence 3799999988752 1233335555221 111 457999999875
No 224
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=44.64 E-value=23 Score=33.82 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=55.8
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHhhccCCch--hhHHhhcCcHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Q 037121 420 AIPPLLNLLSSPDQCVQENAVAALLKLSKHTSG--KKVIVESGGLKVILKVLKSGLSLEARQIAAATLFYLT 489 (683)
Q Consensus 420 ~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~--r~~i~~~g~i~~Lv~lL~~~~~~e~~~~Aa~~L~~Ls 489 (683)
++..|.+-|.+.++.+|..|+.+|-.+..+... ...|.....++.|+.++.+..+.++++.++..+..-+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 445677778899999999999999999887644 5667777789999998877657888888887776655
No 225
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=44.40 E-value=9 Score=31.33 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=11.9
Q ss_pred cccHHHHHHHHHh
Q 037121 300 TYDRSSIQKWLKA 312 (683)
Q Consensus 300 t~~r~cI~~w~~~ 312 (683)
-|||.|+.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999986
No 226
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=44.35 E-value=54 Score=33.89 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhcCchhhHHHHhcCChHHHH-hhcCCCCHHHHHHHHHHHHhhccCCch-hhHHhhcCcHHHHHHHHcC
Q 037121 394 KNKAAYEIRLLAKSNIFNRSCIVESGAIPPLL-NLLSSPDQCVQENAVAALLKLSKHTSG-KKVIVESGGLKVILKVLKS 471 (683)
Q Consensus 394 ~~~a~~~L~~La~~~~~~r~~i~~~G~i~~Lv-~lL~s~d~~~q~~A~~aL~nLs~~~~~-r~~i~~~g~i~~Lv~lL~~ 471 (683)
+.-++..+|.+..+.+.+ +.+-.++ ..+.+..+..+.-+++++.|+-.++.. +..+........+++.+..
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 566888888887754422 2233233 223356788999999999999988874 4444332223445554422
Q ss_pred ----C---CCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhh---------cCCHHHHHHHHHHHHHcccCCc
Q 037121 472 ----G---LSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIE---------EGTDCGKKNAVVAIFGLLLSQG 535 (683)
Q Consensus 472 ----~---~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---------~~~~~~~~~A~~aL~nLs~~~~ 535 (683)
. .+..++..++.+++|++....... .. ...+..+++.+. ..+.+....++.||.+|...++
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~--~~-~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~ 329 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGN--SD-LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 329 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC--SC-TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhccc--ch-HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 1 134577788888899987432110 01 234556666665 3578899999999999986443
No 227
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=44.14 E-value=12 Score=32.14 Aligned_cols=51 Identities=10% Similarity=0.126 Sum_probs=38.7
Q ss_pred CCCccCCCCcccCCC---ceeccCcccccHHHHHHHHHhCCCCCCCCCcccCCCC
Q 037121 277 PEDFRCPISLELMTD---PVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTNTE 328 (683)
Q Consensus 277 ~~~f~CpIc~~~m~d---Pv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~~~ 328 (683)
++-|.|..|...+.+ .....-|..||..|..+.|.. ...|..|++++....
T Consensus 30 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGD 83 (122)
T ss_dssp HHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEE
T ss_pred hhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchh
Confidence 456999999999974 345578899999998887643 237999998876543
No 228
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=43.76 E-value=7.5 Score=27.35 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=11.6
Q ss_pred CCCCCccCCCCcc
Q 037121 275 LNPEDFRCPISLE 287 (683)
Q Consensus 275 ~~~~~f~CpIc~~ 287 (683)
++|+++.||+|+.
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 6899999999985
No 229
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=43.74 E-value=21 Score=29.38 Aligned_cols=51 Identities=24% Similarity=0.430 Sum_probs=39.5
Q ss_pred CCCCccCCCCcccCCCceecc-Cc-----ccccHHHHHHHHHhCCCCCCCCCcccCCC
Q 037121 276 NPEDFRCPISLELMTDPVTVS-TG-----QTYDRSSIQKWLKAGNMLCPKTGEKLTNT 327 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~dPv~~~-cg-----ht~~r~cI~~w~~~~~~~CP~c~~~l~~~ 327 (683)
+++.++|||+++.-..-|.+. .+ .-|+...+.+.... +..-|.+|.+++..
T Consensus 24 ~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~-~~~HPLSREpit~s 80 (102)
T 2kkx_A 24 PLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGE-GLPHPLTREPITAS 80 (102)
T ss_dssp CTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHH-TCCCTTTCCCCCTT
T ss_pred CHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhc-CCCCCCccCCCCHh
Confidence 466889999999999998762 22 25999999999888 45568888887654
No 230
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=42.57 E-value=1.4e+02 Score=35.30 Aligned_cols=216 Identities=13% Similarity=0.089 Sum_probs=115.0
Q ss_pred CHHHHHHHHHHHHhhccCCch-hhHHh-h----cCcHHHHHHHHcC----CCCHHHHHHHHHHHHHhccCchhHHHhhcc
Q 037121 432 DQCVQENAVAALLKLSKHTSG-KKVIV-E----SGGLKVILKVLKS----GLSLEARQIAAATLFYLTSVKGYRKLIGET 501 (683)
Q Consensus 432 d~~~q~~A~~aL~nLs~~~~~-r~~i~-~----~g~i~~Lv~lL~~----~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~ 501 (683)
+-...|.|+.+|+.++..-.+ ...+. + ...++.++.++.+ ...+.++..+++++...+..-.. .
T Consensus 456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------~ 529 (980)
T 3ibv_A 456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------E 529 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------C
T ss_pred CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------C
Confidence 456688899999998864332 11100 1 1234555555552 22678888899998887753221 2
Q ss_pred CCChHHHHHhhhc------CCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHc---c-C--C--C---------
Q 037121 502 PKAIPALVKLIEE------GTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILA---S-S--N--R--------- 558 (683)
Q Consensus 502 ~g~i~~Lv~lL~~------~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~---~-~--~--~--------- 558 (683)
+..++.++..+-+ .+++++..|+.++.++|..... .+ .+.++.++..+. . . + +
T Consensus 530 ~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~--~L--~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~ 605 (980)
T 3ibv_A 530 SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK--QV--VNYTESSLAMLGDLLNISVSPVTDMDAPVPTLN 605 (980)
T ss_dssp CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT--TC--SSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHH
T ss_pred chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH--Hh--hhHHHHHHHHHHHhhcCcCCCCCcccccccchh
Confidence 4566666665544 5678999999999999975443 22 245555555542 1 0 1 0
Q ss_pred ----------hhHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHH----hhccCCCh-H---HHHHHHHHHHHHhcCCh
Q 037121 559 ----------TELITDSLAVLANLAE-DIQGTSTILKTSALPVIIG----LLQTLTSR-A---GKEYCVSILLSLCSNAR 619 (683)
Q Consensus 559 ----------~~~~~~al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~----lL~~~~s~-~---~ke~A~~~L~~L~~~~~ 619 (683)
.-...+|++.|..... .++.+...++ ..++.++. .+....+. . .-.+.+.++.+++++-.
T Consensus 606 ~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~ 684 (980)
T 3ibv_A 606 SSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFP 684 (980)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSC
T ss_pred hhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCC
Confidence 1113445555544433 3443433332 22333333 33322111 1 22245555666665421
Q ss_pred H------HHHHHHhcCCCcHHHHHHhHh--cCCHHHHHHHHHHHHHHHHh
Q 037121 620 E------EVTASLAKDPSLMNSLYSLTT--DGTSQARKKARSLIKILHKF 661 (683)
Q Consensus 620 ~------~~~~~l~~~~g~i~~L~~Ll~--~g~~~~k~~A~~lL~~l~~~ 661 (683)
. .+...+. .+.+.+...+. .++..++++++.+++.+-..
T Consensus 685 ~~~~~~~p~~~~f~---~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~ 731 (980)
T 3ibv_A 685 ARGSEEVAWLASFN---KASDEIFLILDRMGFNEDIRGAVRFTSGRIINV 731 (980)
T ss_dssp SCC-CCCSHHHHHH---HHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCcHHHHHH---HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 1 0233332 23555555555 56788999988888765443
No 231
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=40.67 E-value=61 Score=29.56 Aligned_cols=71 Identities=11% Similarity=0.136 Sum_probs=55.3
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhc------CCHHHHHHHHHHHHHHHH
Q 037121 588 LPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTD------GTSQARKKARSLIKILHK 660 (683)
Q Consensus 588 i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~------g~~~~k~~A~~lL~~l~~ 660 (683)
+..|.+-|.++ ++.++-.|+.+|-.+..+.+......+.. ...+.-|+.++.. .+..+|+++..++..-..
T Consensus 52 ~ral~krl~~~-n~~vql~AL~LLd~~vkNCG~~Fh~evas-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 52 VRLLAHKIQSP-QEWEALQALTVLEACMKNCGRRFHNEVGK-FRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTS-HHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhh-HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45677777777 89999999999988888877776666665 6678888888863 367899999988886554
No 232
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=39.63 E-value=32 Score=33.06 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=58.7
Q ss_pred CChHHHHHhhhcCCHHHHHHHHHHHHHcccCCch--hhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhh
Q 037121 503 KAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGN--HQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA 573 (683)
Q Consensus 503 g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n--~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa 573 (683)
.++..|.+.|.++++.++..|+..|-.+..+-+. ...+.+...+..|+.++....+..+.+.++.+|...+
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 4677788888899999999999999888887664 5667777888889999866678899999999998776
No 233
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=39.27 E-value=56 Score=29.03 Aligned_cols=71 Identities=13% Similarity=0.168 Sum_probs=55.0
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhc------CCHHHHHHHHHHHHHHHH
Q 037121 588 LPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTD------GTSQARKKARSLIKILHK 660 (683)
Q Consensus 588 i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~------g~~~~k~~A~~lL~~l~~ 660 (683)
+..|.+-|.++ ++.++-.|+.+|-.+..+.+......+.. ...+.-|+.++.. .++.+|+++..++..-..
T Consensus 40 ~rai~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 40 PWLLAHKIQSP-QEKEALYALTVLEMCMNHCGEKFHSEVAK-FRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHTS-HHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhh-HHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 45677777777 89999999999988888877776666665 5678888888864 367899988888776554
No 234
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=38.56 E-value=11 Score=27.15 Aligned_cols=14 Identities=29% Similarity=0.638 Sum_probs=12.3
Q ss_pred CCCCCccCCCCccc
Q 037121 275 LNPEDFRCPISLEL 288 (683)
Q Consensus 275 ~~~~~f~CpIc~~~ 288 (683)
++|+++.||+|..-
T Consensus 32 ~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 32 DLPDDWACPVCGAS 45 (52)
T ss_dssp SSCTTCCCSSSCCC
T ss_pred HCCCCCcCCCCCCc
Confidence 78999999999853
No 235
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=38.16 E-value=10 Score=27.66 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=12.3
Q ss_pred CCCCCccCCCCccc
Q 037121 275 LNPEDFRCPISLEL 288 (683)
Q Consensus 275 ~~~~~f~CpIc~~~ 288 (683)
++|+++.||+|..-
T Consensus 32 ~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 32 DIPDDWVCPLCGVG 45 (54)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred HCCCCCcCcCCCCc
Confidence 78999999999853
No 236
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=38.03 E-value=18 Score=30.95 Aligned_cols=47 Identities=9% Similarity=0.129 Sum_probs=37.1
Q ss_pred CCCccCCCCcccCCC-ceeccCcccccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 277 PEDFRCPISLELMTD-PVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 277 ~~~f~CpIc~~~m~d-Pv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
++-|.|..|...+.+ +....-|..||..|..+-+ ...|+.|++++..
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCCc
Confidence 467999999998876 4556789999999876543 5689999988764
No 237
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=37.86 E-value=35 Score=31.19 Aligned_cols=11 Identities=27% Similarity=0.543 Sum_probs=8.1
Q ss_pred CCCCCCCCccc
Q 037121 314 NMLCPKTGEKL 324 (683)
Q Consensus 314 ~~~CP~c~~~l 324 (683)
...||.|+.+-
T Consensus 153 p~~CP~Cg~~~ 163 (170)
T 3pwf_A 153 PEYCPVCGAPK 163 (170)
T ss_dssp CSBCTTTCCBG
T ss_pred CCCCCCCCCCH
Confidence 44899998653
No 238
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=37.79 E-value=10 Score=29.78 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=31.9
Q ss_pred ccCCCCcccCCCcee----ccCcc----cccHHHHHHHHHhCCCCCCCCCcccCCCCCCCcH
Q 037121 280 FRCPISLELMTDPVT----VSTGQ----TYDRSSIQKWLKAGNMLCPKTGEKLTNTELLPNT 333 (683)
Q Consensus 280 f~CpIc~~~m~dPv~----~~cgh----t~~r~cI~~w~~~~~~~CP~c~~~l~~~~l~pn~ 333 (683)
-.||||+..+..--. ++-+. --+|.-...-+.+=.+.||.|+..+.-..+..+.
T Consensus 9 ~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~~Lp~~E 70 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTLPRRE 70 (95)
T ss_dssp EECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTSSCTTT
T ss_pred ccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcccCChHH
Confidence 479999987753211 11111 1245544555555457899999988766665543
No 239
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=37.69 E-value=9.4 Score=28.52 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=28.9
Q ss_pred hhHHhHHHHHhcCCCCCHH---HHHHHHHHHHHHHHHHHHHHHcc
Q 037121 64 ILLIFFEEIRDRGLNLSDL---VVLCFSELHLTFQKVQFLMEDCT 105 (683)
Q Consensus 64 ll~~lleel~~~~~~~~~~---~~~~l~~L~~~l~~ak~Ll~~c~ 105 (683)
-|..++||+... +.|. ...+.+.|..-+..|+.|+..|.
T Consensus 15 ~LL~VIeEmgkd---IrpTYaGsk~~~ERLkR~I~hAr~LVrECl 56 (65)
T 2kw6_A 15 ELLAIIEELGKE---IRPTYAGSKSAMERLKRGIIHARGLVRECL 56 (65)
T ss_dssp HHHHHHHHHTTT---HHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc---cchhhccCcchHHHHHHHHHHHHHHHHHHH
Confidence 456678888521 1222 35588999999999999999997
No 240
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=36.62 E-value=75 Score=28.29 Aligned_cols=72 Identities=10% Similarity=0.098 Sum_probs=55.4
Q ss_pred hHHHHHhhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhc------CCHHHHHHHHHHHHHHHHh
Q 037121 588 LPVIIGLLQTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTD------GTSQARKKARSLIKILHKF 661 (683)
Q Consensus 588 i~~Lv~lL~~~~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~------g~~~~k~~A~~lL~~l~~~ 661 (683)
+..|.+-+.++ ++.++-.|+.+|-.+..+.+......+.. ..++.-|+.++.. .++.+|.++..++..-...
T Consensus 50 ~ral~krl~~~-n~~v~l~AL~LLe~cvkNCG~~fh~eias-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 50 TRLLAHKIQSP-QEWEAIQALTVLETCMKSCGKRFHDEVGK-FRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCCHHHHHHHTS-HHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcCHHHHHHHhh-HHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 45677767777 89999999999988888877776666665 5678888888853 5778999988888766543
No 241
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=35.53 E-value=2.5e+02 Score=25.34 Aligned_cols=73 Identities=16% Similarity=0.121 Sum_probs=53.8
Q ss_pred HHHHHHHhhhHHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHcccCcchhhhHHhhH--HHHHHHHHHHHHHHH
Q 037121 56 REAIRQIGILLIFFEEIRDRGLNLSDLVVLCFSELHLTFQKVQFLMEDCTREGAKLWVLMKSQ--FIATQFRVLIRAIAT 133 (683)
Q Consensus 56 ~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~~Sklyll~~~~--~i~~~f~~~~~~l~~ 133 (683)
++..++..+|..-++||...+.. |.--..|+.-+..|..+..+.+.+. ..|-++.++ .+...+..+.+.+..
T Consensus 8 ~e~~~~~d~L~~ql~El~~~~l~--~gE~eeLe~e~~rL~nae~l~~~~~----~a~~~L~~~e~~~~~~L~~a~~~L~~ 81 (175)
T 4abx_A 8 RERARQIDLLAFQVQEISEVSPD--PGEEEGLNTELSRLSNLHTIAQAAA----GGVELLSDGDLNAAGLIGEAVRALNA 81 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCC--TTHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC--CChHHHHHHHHHHHHCHHHHHHHHH----HHHHHHhCCcchHHHHHHHHHHHHHH
Confidence 46678999999999999877643 3345667778888888888888887 445555543 577777777777776
Q ss_pred H
Q 037121 134 A 134 (683)
Q Consensus 134 ~ 134 (683)
.
T Consensus 82 l 82 (175)
T 4abx_A 82 G 82 (175)
T ss_dssp H
T ss_pred H
Confidence 4
No 242
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=33.48 E-value=13 Score=26.78 Aligned_cols=13 Identities=31% Similarity=0.698 Sum_probs=11.8
Q ss_pred CCCCCccCCCCcc
Q 037121 275 LNPEDFRCPISLE 287 (683)
Q Consensus 275 ~~~~~f~CpIc~~ 287 (683)
++|+++.||+|..
T Consensus 31 ~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 31 DLPDDWVCPLCGA 43 (52)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 7899999999985
No 243
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=33.29 E-value=15 Score=29.24 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=12.3
Q ss_pred CCCCCccCCCCccc
Q 037121 275 LNPEDFRCPISLEL 288 (683)
Q Consensus 275 ~~~~~f~CpIc~~~ 288 (683)
++|+++.||+|..-
T Consensus 56 dlPddW~CPvCga~ 69 (81)
T 2kn9_A 56 DIPDDWSCPDCGAA 69 (81)
T ss_dssp TSCTTCCCTTTCCC
T ss_pred HCCCCCcCCCCCCC
Confidence 78999999999863
No 244
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=33.05 E-value=13 Score=27.12 Aligned_cols=14 Identities=29% Similarity=0.282 Sum_probs=12.2
Q ss_pred CCCCCccCCCCccc
Q 037121 275 LNPEDFRCPISLEL 288 (683)
Q Consensus 275 ~~~~~f~CpIc~~~ 288 (683)
++|+++.||+|..-
T Consensus 32 ~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 32 DIPADWVCPDCGVG 45 (55)
T ss_dssp GSCTTCCCTTTCCC
T ss_pred HCCCCCcCCCCCCC
Confidence 68999999999853
No 245
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=32.95 E-value=1e+02 Score=27.50 Aligned_cols=72 Identities=13% Similarity=0.085 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcC-chhhHHHHhcCChHH-HHhhcCC---CCHHHHHHHHHHHHhhc
Q 037121 376 KLMSRFLARRLF-FGTNEEKNKAAYEIRLLAKSN-IFNRSCIVESGAIPP-LLNLLSS---PDQCVQENAVAALLKLS 447 (683)
Q Consensus 376 ~~~i~~Lv~~L~-s~~~~~~~~a~~~L~~La~~~-~~~r~~i~~~G~i~~-Lv~lL~s---~d~~~q~~A~~aL~nLs 447 (683)
+..+..|.++|. ++++.+|..|+..|-.+.+.. ......++...++.- |+.++.. .+..+++.++..+..-+
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 346677888997 579999999999999998853 455556766777877 7887742 35688888888887765
No 246
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=32.87 E-value=25 Score=30.31 Aligned_cols=49 Identities=10% Similarity=0.232 Sum_probs=37.9
Q ss_pred CCCccCCCCcccCC---CceeccCcccccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 277 PEDFRCPISLELMT---DPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 277 ~~~f~CpIc~~~m~---dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
++-|.|..|...+. .+....-|..||..|..+-+.. ...|+.|++++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 57899999999985 3566678999999998776532 2279999987754
No 247
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=32.12 E-value=50 Score=31.41 Aligned_cols=71 Identities=14% Similarity=0.256 Sum_probs=56.5
Q ss_pred CChHHHHHhhhcCCHHHHHHHHHHHHHcccCCch--hhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhh
Q 037121 503 KAIPALVKLIEEGTDCGKKNAVVAIFGLLLSQGN--HQKVLDAGTVPLLADILASSNRTELITDSLAVLANLA 573 (683)
Q Consensus 503 g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n--~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa 573 (683)
.++..|.+.|.++++.++..|+..|-.+..+-+. ...+.+...+..|+.++....+..+++.++.++..-+
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4667778888889999999999999998887653 4566777788889998855567888888888887665
No 248
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.14 E-value=1.1e+02 Score=26.07 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=32.6
Q ss_pred hhhhhHHHHHHHHhhhHHhHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 037121 50 TQRRNAREAIRQIGILLIFFEEIRDRGLNLSDLVVLCFSELHLTFQK 96 (683)
Q Consensus 50 ~~k~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ 96 (683)
..|+-+.+..+|+..| |+-++..+ +++.++..|-+|-.+|+.
T Consensus 33 ~~k~~~~D~~KRL~~L---fdkLn~~~--Ls~~v~~~L~~l~~al~~ 74 (118)
T 2yru_A 33 TKKQVCDDISRRLALL---REQWAGGK--LSIPVKKRMALLVQELLH 74 (118)
T ss_dssp SCHHHHHHHHHHHHHH---HHHHHHTC--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHhcCC--CCHHHHHHHHHHHHHHHc
Confidence 3466678888887665 88888666 588899999999988874
No 249
>2nz7_A NOD1, caspase recruitment domain-containing protein 4, CARD4; helix swapped, disulfide bond, apoptosis; 1.90A {Homo sapiens} PDB: 2nsn_A
Probab=30.64 E-value=40 Score=27.75 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=57.1
Q ss_pred hhhhhHHHHHHHHhhhHHhHHHHHhcCCCCCHHHHHHHH-HHHHHHHHHHHHHHHcccCcchhhhHHhhHHHHHHHHHHH
Q 037121 50 TQRRNAREAIRQIGILLIFFEEIRDRGLNLSDLVVLCFS-ELHLTFQKVQFLMEDCTREGAKLWVLMKSQFIATQFRVLI 128 (683)
Q Consensus 50 ~~k~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~-~L~~~l~~ak~Ll~~c~~~~Sklyll~~~~~i~~~f~~~~ 128 (683)
.-+++=..+++++.-+.++|+.|...+. +.+.- .... .-...-++|+.|+..... +|+.....|....
T Consensus 14 ~L~~~R~~LV~~l~~V~~lLD~LL~~~V-L~~ee-~~I~~~~~T~~~kaR~Lld~v~~---------KG~~A~~~F~~~L 82 (98)
T 2nz7_A 14 LLKSNRELLVTHIRNTQCLVDNLLKNDY-FSAED-AEIVCACPTQPDKVRKILDLVQS---------KGEEVSEFFLYLL 82 (98)
T ss_dssp HHHHTHHHHHHHCCCCHHHHHHHHHTTS-SCHHH-HHHHHTCCSHHHHHHHHHHHHHH---------HCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHcCC-CCHHH-HHHHccCCCcHHHHHHHHHHHHH---------HhHHHHHHHHHHH
Confidence 3466666789999899999999996664 44443 3333 235567899999988762 4588888899998
Q ss_pred HHHHHHhhcC
Q 037121 129 RAIATALDVF 138 (683)
Q Consensus 129 ~~l~~~L~~l 138 (683)
.+.+++|-.+
T Consensus 83 ~e~~~~~~~~ 92 (98)
T 2nz7_A 83 QQLADAYVDL 92 (98)
T ss_dssp HHHHHSSGGG
T ss_pred HHhCccchhh
Confidence 8888877554
No 250
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=30.46 E-value=16 Score=28.22 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=12.3
Q ss_pred CCCCCccCCCCccc
Q 037121 275 LNPEDFRCPISLEL 288 (683)
Q Consensus 275 ~~~~~f~CpIc~~~ 288 (683)
++|+++.||+|..-
T Consensus 36 ~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 36 DLSDSFMCPACRSP 49 (70)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred hCCCCCcCCCCCCC
Confidence 68999999999864
No 251
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=28.20 E-value=67 Score=28.22 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=53.4
Q ss_pred hhhhhHHHHHHHHhhhHHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHcccCcchhhhHHhhHHHHHHHHHHHH
Q 037121 50 TQRRNAREAIRQIGILLIFFEEIRDRGLNLSDLVVLCFSELHLTFQKVQFLMEDCTREGAKLWVLMKSQFIATQFRVLIR 129 (683)
Q Consensus 50 ~~k~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~~Sklyll~~~~~i~~~f~~~~~ 129 (683)
+.+++=..|+++++-+..+|+.|...+. ++..-.+-.....-.-+||+.|++.+..+| +.....|-.+..
T Consensus 28 ~Lk~hRe~LV~rl~~v~~LLD~LL~~gv-Ls~EE~EiV~~~~T~~dKaRrLLDlV~sKG---------e~a~e~Ll~~Lq 97 (144)
T 4e9m_A 28 LLKSNRELLVTHIRNTQCLVDNLLKNDY-FSAEDAEIVCACPTQPDKVRKILDLVQSKG---------EEVSEFFLYLLQ 97 (144)
T ss_dssp HHHHTHHHHHHHCCCCHHHHHHHHHTTS-SCHHHHHHHHTSSSHHHHHHHHHHHHHHHC---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHcCC-CCHHHHHHHhccCChHHHHHHHHHHHHHhh---------HHHHHHHHHHHH
Confidence 5677778999999999999999997765 344333555667777899999999988433 555555555554
Q ss_pred HHHHH
Q 037121 130 AIATA 134 (683)
Q Consensus 130 ~l~~~ 134 (683)
++..+
T Consensus 98 ql~da 102 (144)
T 4e9m_A 98 QLADA 102 (144)
T ss_dssp HHHHH
T ss_pred Hcccc
Confidence 44443
No 252
>3brd_D Protein LIN-12; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans}
Probab=28.17 E-value=19 Score=22.01 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=15.0
Q ss_pred CCCCCCCCCCCcccCCCC
Q 037121 6 NQSDRRVLSFPAVHPCEA 23 (683)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~ 23 (683)
..|+||+...|..+||..
T Consensus 5 RsRKRr~i~A~vW~PPME 22 (29)
T 3brd_D 5 RTRKRRMINASVWMPPME 22 (29)
T ss_pred cchhheeecccccCCCcc
Confidence 458999999999998854
No 253
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=27.79 E-value=28 Score=24.27 Aligned_cols=37 Identities=8% Similarity=0.112 Sum_probs=22.8
Q ss_pred CccCCCCcccCCCceeccCcccccHHHHHHHHH----hCCCCCCCCCcccCC
Q 037121 279 DFRCPISLELMTDPVTVSTGQTYDRSSIQKWLK----AGNMLCPKTGEKLTN 326 (683)
Q Consensus 279 ~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~----~~~~~CP~c~~~l~~ 326 (683)
.|.|++|...+.... .+..+.. .....|+.|+..+..
T Consensus 4 ~~~C~~C~~~f~~~~-----------~l~~H~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 4 SRECSYCGKFFRSNY-----------YLNIHLRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp -CBCTTTCCBCSCHH-----------HHHHHHHHHHCCCCEECSSSSCEESS
T ss_pred CccCCCCcchhCChH-----------HHHHHHHHcCCCCCcCCCCCcchhCC
Confidence 578999988877642 2233322 234679999886643
No 254
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=27.63 E-value=1.8e+02 Score=26.61 Aligned_cols=56 Identities=11% Similarity=0.038 Sum_probs=32.3
Q ss_pred cccchhHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHh
Q 037121 143 VDICGEVKELVDLVAKQARKAKFELDKEDERAMKRVLSILNYFEKGIEPDSGFMTWVLDY 202 (683)
Q Consensus 143 l~ls~ev~e~v~l~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 202 (683)
+++++|=++++..++++.+......-..-.....++..++. ..+||.+.++.++..
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~----a~~~DeakI~aL~~E 121 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLT----ASSPDTAKINAVAKE 121 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----SSSCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCCCHHHHHHHHHH
Confidence 67999999999999888775433221111222333444332 467888877766544
No 255
>2m1l_A Cyclin-dependent kinase 2-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=27.50 E-value=20 Score=27.10 Aligned_cols=42 Identities=17% Similarity=0.119 Sum_probs=27.5
Q ss_pred hhHHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHcc
Q 037121 64 ILLIFFEEIRDRGLNLSDLVVLCFSELHLTFQKVQFLMEDCT 105 (683)
Q Consensus 64 ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~ 105 (683)
-|..++||+...-.|--.-...+.+.|..-+..|+.|+..|.
T Consensus 19 ~LL~vIeEmgkdirPTyagsks~~ERLkRgI~hAr~LVRECl 60 (69)
T 2m1l_A 19 DLLSVIEEMGKEIRPTYAGSKSAMERLKRGIIHARALVRECL 60 (69)
T ss_dssp HHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccccchhhcCcchHHHHHHHHHHHHHHHHHHH
Confidence 345567777521100000124588999999999999999996
No 256
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=27.33 E-value=20 Score=28.90 Aligned_cols=14 Identities=29% Similarity=0.460 Sum_probs=12.2
Q ss_pred CCCCCccCCCCccc
Q 037121 275 LNPEDFRCPISLEL 288 (683)
Q Consensus 275 ~~~~~f~CpIc~~~ 288 (683)
++|+++.||+|..-
T Consensus 64 dlPddW~CPvCga~ 77 (87)
T 1s24_A 64 DIPDDWCCPDCGAT 77 (87)
T ss_dssp GCCTTCCCSSSCCC
T ss_pred HCCCCCCCCCCCCC
Confidence 78999999999853
No 257
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=27.14 E-value=5.4e+02 Score=26.58 Aligned_cols=178 Identities=13% Similarity=0.127 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHhc-CchhhHHHHhcCChHHHHhhcCCCCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHH
Q 037121 391 NEEKNKAAYEIRLLAKS-NIFNRSCIVESGAIPPLLNLLSSPDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVL 469 (683)
Q Consensus 391 ~~~~~~a~~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL 469 (683)
.+.+...+..++.+..+ ++. .-..+++.++.+-.+.+.+++.-.+..|...+.. +..+. .-+++.|..+|
T Consensus 39 ~~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---~~el~-~~~l~~L~~LL 109 (386)
T 3o2t_A 39 NDSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---DIELL-LKLIANLNMLL 109 (386)
T ss_dssp STHHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---CGGGH-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHH
Confidence 36789999999997653 332 2257889999999999999999999999877642 12222 34577777888
Q ss_pred cCCCCHHHHHHHHHHHHHh--------ccCch------hHHHhhccCCChHHHHHhhhcCCHHHHHHHHHHHHHccc--C
Q 037121 470 KSGLSLEARQIAAATLFYL--------TSVKG------YRKLIGETPKAIPALVKLIEEGTDCGKKNAVVAIFGLLL--S 533 (683)
Q Consensus 470 ~~~~~~e~~~~Aa~~L~~L--------s~~~~------~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~--~ 533 (683)
... +..+...+..+..++ +.+.. ..+... ...-..++.++.+++..++..|+..+-.+.. .
T Consensus 110 ~d~-d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m--~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS 186 (386)
T 3o2t_A 110 RDE-NVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMV--SAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLS 186 (386)
T ss_dssp TCS-SHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHH--HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTS
T ss_pred cCC-CHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH--HHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhC
Confidence 766 666665544443332 11111 111111 1233455666677777777777776655431 1
Q ss_pred ---------------------Cchh-----hhHh--hcCcHHHHHHHHccC-CChhHHHHHHHHHHHhhC-ChhhHH
Q 037121 534 ---------------------QGNH-----QKVL--DAGTVPLLADILASS-NRTELITDSLAVLANLAE-DIQGTS 580 (683)
Q Consensus 534 ---------------------~~n~-----~~iv--~~g~v~~Lv~lL~~~-~~~~~~~~al~iL~nLa~-~~~~~~ 580 (683)
+.|. ..+- ..+.+..|+..+... .+......++..|.+|+. .|....
T Consensus 187 ~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~ 263 (386)
T 3o2t_A 187 PRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMS 263 (386)
T ss_dssp CCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHH
T ss_pred CCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHH
Confidence 0011 1111 125677788887422 234455667788888774 444333
No 258
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=26.98 E-value=71 Score=28.80 Aligned_cols=47 Identities=9% Similarity=0.153 Sum_probs=35.7
Q ss_pred CCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 277 PEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
++-|.|..|...+.+.-...-|..||..|..+-+ ...|..|++.+..
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f---~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF---GTKCAACQLGIPP 77 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH---SCBCTTTCCBCCT
T ss_pred cccCccCCCCCcCCCCCcccCCeeeecccccccc---cccccccccccCC
Confidence 5689999999988765445678999999977765 3578888876643
No 259
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=26.84 E-value=50 Score=30.27 Aligned_cols=47 Identities=9% Similarity=0.153 Sum_probs=32.4
Q ss_pred CCCccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 277 PEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
++-|.|..|...+.+.-...-|..||..|..+-| ...|..|++++..
T Consensus 85 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f---~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF---GTKCAACQLGIPP 131 (182)
T ss_dssp SSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTT---SCCCTTTCCCCCS
T ss_pred cccCccCCCCCccCCCceeECCEeeecCcccccc---ccccccCCCccCC
Confidence 4568888888877654334567888888765433 4578888877654
No 260
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=26.76 E-value=4.1e+02 Score=32.00 Aligned_cols=128 Identities=9% Similarity=-0.053 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHhhccCCchhhHHhhcCcHHHHHHHHc-CCCCHHHHHHHHHHHHHhccC------chhHHHhhccCC
Q 037121 431 PDQCVQENAVAALLKLSKHTSGKKVIVESGGLKVILKVLK-SGLSLEARQIAAATLFYLTSV------KGYRKLIGETPK 503 (683)
Q Consensus 431 ~d~~~q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~e~~~~Aa~~L~~Ls~~------~~~~~~i~~~~g 503 (683)
.+...+..|-..|.++..++ ++...+...|. ...+..+|..|+-+|.+.... .+.+..|-. .
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~--~ 93 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEKC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN--S 93 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH--H
T ss_pred CChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH--H
Confidence 46777888888887765432 24444444443 444788999999999887532 233333322 2
Q ss_pred ChHHHHHhhhc---CCHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHccCCChhHHHHHHHHHHHhhC
Q 037121 504 AIPALVKLIEE---GTDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILASSNRTELITDSLAVLANLAE 574 (683)
Q Consensus 504 ~i~~Lv~lL~~---~~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~~~~~~~~~~~al~iL~nLa~ 574 (683)
.+..+...... .+..++...+.++..+...+--. -..+.++.|++++ .. +....+.++.+|..|+.
T Consensus 94 ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~---~Wp~ll~~L~~~~-~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 94 VMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ---HWPDMLIELDTLS-KQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT---TCTTHHHHHHHHH-HT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHH
Confidence 33333322111 34667777777777776542110 1347888899988 33 45667888999998874
No 261
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=26.68 E-value=14 Score=34.31 Aligned_cols=49 Identities=12% Similarity=0.280 Sum_probs=37.2
Q ss_pred CCCccCCCCcccCCC---ceeccCcccccHHHHHHHHHhCCCCCCCCCcccCC
Q 037121 277 PEDFRCPISLELMTD---PVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLTN 326 (683)
Q Consensus 277 ~~~f~CpIc~~~m~d---Pv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~~ 326 (683)
++-|.|..|...+.+ +....-|..||..|..+-+.. ...|+.|++++..
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~-~~~C~~C~~~I~~ 81 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGACSACGQSIPA 81 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC-CEECTTTCCEECT
T ss_pred ccCcccCCCCcccccCCceEEEeCCcccccccccccccc-CCccccCCCcccc
Confidence 467999999998874 666678899999998776532 1269999887753
No 262
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.43 E-value=84 Score=23.48 Aligned_cols=36 Identities=11% Similarity=0.125 Sum_probs=27.7
Q ss_pred CCCccCCCCcccCCCc-eeccCcccccHHHHHHHHHh
Q 037121 277 PEDFRCPISLELMTDP-VTVSTGQTYDRSSIQKWLKA 312 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dP-v~~~cght~~r~cI~~w~~~ 312 (683)
++-|.|..|...+.+. ....-|..||+.|..+.|..
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 31 VGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred ccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 4579999999888543 44567889999998888764
No 263
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=25.62 E-value=64 Score=25.68 Aligned_cols=47 Identities=9% Similarity=0.115 Sum_probs=33.0
Q ss_pred CCCCCccCCCCcccCCCcee--ccCcccccHHHHHHH------------HHh---CCCCCCCCC
Q 037121 275 LNPEDFRCPISLELMTDPVT--VSTGQTYDRSSIQKW------------LKA---GNMLCPKTG 321 (683)
Q Consensus 275 ~~~~~f~CpIc~~~m~dPv~--~~cght~~r~cI~~w------------~~~---~~~~CP~c~ 321 (683)
.++.+-.|+||...-.+-.. -.||..|-..|+.+- ... ..+.||.|.
T Consensus 11 ~~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 11 PVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCCCCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 67788999999855544322 248899999999985 111 346899994
No 264
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=25.58 E-value=4.6e+02 Score=27.26 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=26.1
Q ss_pred HhcCChHHHHhhcCCCCHHHHHHHHHHHHhhc
Q 037121 416 VESGAIPPLLNLLSSPDQCVQENAVAALLKLS 447 (683)
Q Consensus 416 ~~~G~i~~Lv~lL~s~d~~~q~~A~~aL~nLs 447 (683)
++..++-.|+.++.+.|+.-+...-++|..+-
T Consensus 126 id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY 157 (403)
T 3fga_B 126 IDQKFVLQLLELFDSEDPRERDFLKTTLHRIY 157 (403)
T ss_dssp SCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 34456778999999999999998888888765
No 265
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=25.38 E-value=20 Score=28.49 Aligned_cols=40 Identities=15% Similarity=0.396 Sum_probs=20.1
Q ss_pred ccCCCCcccCCCceeccCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 280 FRCPISLELMTDPVTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 280 f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
..||.|...|..- -++.+|..|=.. +.. ...||.|++++.
T Consensus 3 ~~CP~C~~~l~~~----~~~~~C~~C~~~-~~~-~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERN----GDTAHCETCAKD-FSL-QALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEEC----SSEEECTTTCCE-EEE-EEECSSSCSCCC
T ss_pred CCCCCCCCccccC----CCceECcccccc-CCC-cccCcchhhHHH
Confidence 5788888777421 112223333110 111 237888888764
No 266
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=24.66 E-value=1.1e+02 Score=27.42 Aligned_cols=71 Identities=6% Similarity=0.008 Sum_probs=53.5
Q ss_pred ChHHHHhhcC-CCCHHHHHHHHHHHHhhccCCch--hhHHhhcCcHHH-HHHHHcC--CCCHHHHHHHHHHHHHhcc
Q 037121 420 AIPPLLNLLS-SPDQCVQENAVAALLKLSKHTSG--KKVIVESGGLKV-ILKVLKS--GLSLEARQIAAATLFYLTS 490 (683)
Q Consensus 420 ~i~~Lv~lL~-s~d~~~q~~A~~aL~nLs~~~~~--r~~i~~~g~i~~-Lv~lL~~--~~~~e~~~~Aa~~L~~Ls~ 490 (683)
++..|.+-|. +.++.+|..|+.+|-.+..+... ...+.....++. |+.++.. .....+++.+...+..-+.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 4456777786 48999999999999999888654 666777888888 7888853 2246788888877766553
No 267
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=24.43 E-value=55 Score=24.96 Aligned_cols=45 Identities=11% Similarity=0.078 Sum_probs=33.4
Q ss_pred CCCccCCCCcccCCC-ceeccCcccccH-HHHHHHHHhCCCCCCCCCccc
Q 037121 277 PEDFRCPISLELMTD-PVTVSTGQTYDR-SSIQKWLKAGNMLCPKTGEKL 324 (683)
Q Consensus 277 ~~~f~CpIc~~~m~d-Pv~~~cght~~r-~cI~~w~~~~~~~CP~c~~~l 324 (683)
++-|.|..|...+.+ +....-|..||. .|..+-| ...|..|+..+
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f---~~~C~~C~~~~ 71 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF---GPKGFGRGGAE 71 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS---SCCCSSCCCSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHh---CccCCCcCCce
Confidence 567999999998876 555667899998 5876544 45688887544
No 268
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=23.26 E-value=69 Score=25.29 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=27.1
Q ss_pred CCCCccCCCCcccCCCceeccCcccccHHHHHHHHHh----CCCCCCCCCcccCC
Q 037121 276 NPEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKA----GNMLCPKTGEKLTN 326 (683)
Q Consensus 276 ~~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~----~~~~CP~c~~~l~~ 326 (683)
..+.+.|++|...|... ..+.++... ..+.|+.|++.+..
T Consensus 25 ~~~~h~C~~Cgk~F~~~-----------~~L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 25 SAECHLCPVCGESFASK-----------GAQERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp CCTTEECTTSCCEESSH-----------HHHHHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCCCEECCCCCCCcCcH-----------HHHhhhhhhccCCCccCCCCCCCEeCC
Confidence 35568999998887753 445555543 23579999987754
No 269
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=22.21 E-value=4.3e+02 Score=27.69 Aligned_cols=129 Identities=13% Similarity=0.116 Sum_probs=77.7
Q ss_pred HHHHHHHHHhhccCCchhhHHhhcCcHHHHHH-HHcCCCCHHHHHHHHHHHHHhccCchhHHHhhccCCChHHHHHhhhc
Q 037121 436 QENAVAALLKLSKHTSGKKVIVESGGLKVILK-VLKSGLSLEARQIAAATLFYLTSVKGYRKLIGETPKAIPALVKLIEE 514 (683)
Q Consensus 436 q~~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~-lL~~~~~~e~~~~Aa~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~ 514 (683)
+--++-+|.-+..++.... .+..++. .+.+. +...+--++.++.||-........+.........+++.+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~~------~l~~li~~~l~~~-~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYSS------DIKDYIEEGLGNK-NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCGG------GGHHHHHHHTTCS-SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchHH------HHHHHHHHhcCCC-ChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 3446666666665554322 2333332 33334 67788889999999988877555554412234455554421
Q ss_pred --------CCHHHHHHHHHHHHHcccCCch-hhhHhhcCcHHHHHHHHc-----c---CCChhHHHHHHHHHHHhhC
Q 037121 515 --------GTDCGKKNAVVAIFGLLLSQGN-HQKVLDAGTVPLLADILA-----S---SNRTELITDSLAVLANLAE 574 (683)
Q Consensus 515 --------~~~~~~~~A~~aL~nLs~~~~n-~~~iv~~g~v~~Lv~lL~-----~---~~~~~~~~~al~iL~nLa~ 574 (683)
.+...+..+++.++|++..... +. +...+..+++.+. . ..+.+....++-+|++|..
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 2346777888889999874221 11 1234456666663 1 2477889999999999985
No 270
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.65 E-value=66 Score=23.98 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=25.3
Q ss_pred CCCccCCCCcccCCCc-eeccCcccccHHHHHHHHHh
Q 037121 277 PEDFRCPISLELMTDP-VTVSTGQTYDRSSIQKWLKA 312 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dP-v~~~cght~~r~cI~~w~~~ 312 (683)
++-|.|..|...+.+- ....-|..||..|..+.+..
T Consensus 29 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~ 65 (70)
T 2d8x_A 29 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKAS 65 (70)
T ss_dssp TTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCC
T ss_pred ccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCC
Confidence 4568888888877664 23356788888887776643
No 271
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=21.41 E-value=58 Score=22.49 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=22.6
Q ss_pred ccCCCCcccCCCceeccCcccccHHHHHHHHHh----CCCCCCCCCcccCC
Q 037121 280 FRCPISLELMTDPVTVSTGQTYDRSSIQKWLKA----GNMLCPKTGEKLTN 326 (683)
Q Consensus 280 f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~----~~~~CP~c~~~l~~ 326 (683)
|.|++|...+..+ ..+..+... ....|+.|+..+..
T Consensus 2 ~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f~~ 41 (57)
T 1bbo_A 2 YICEECGIRXKKP-----------SMLKKHIRTHTDVRPYHCTYCNFSFKT 41 (57)
T ss_dssp CBCTTTCCBCSSH-----------HHHHHHHHHTSSCCCEECSSSSCEESS
T ss_pred CcCCCCcCcCCCH-----------HHHHHHHHhcCCCCCccCCCCCchhcC
Confidence 6788888777654 233444433 23579999876643
No 272
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=21.04 E-value=1.8e+02 Score=28.17 Aligned_cols=126 Identities=14% Similarity=0.121 Sum_probs=73.3
Q ss_pred HHHHHHHhhccCCchhhHHhhcCcHHHHHH-HHcCCCCHHHHHHHHHHHHHhccCch-hHHHhhccCCChHHHHHhhhc-
Q 037121 438 NAVAALLKLSKHTSGKKVIVESGGLKVILK-VLKSGLSLEARQIAAATLFYLTSVKG-YRKLIGETPKAIPALVKLIEE- 514 (683)
Q Consensus 438 ~A~~aL~nLs~~~~~r~~i~~~g~i~~Lv~-lL~~~~~~e~~~~Aa~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~- 514 (683)
-++.++.-+..++..- +.+..++. .+.++ +...+--++.++.|+-..+. .+..+.. ......+++.+.+
T Consensus 73 P~lDllRl~~~~~~~~------~~l~~~l~~~~~~~-~~~~~ml~lR~l~NlF~~~~~g~~l~~~-~~~~~~i~~~i~~~ 144 (253)
T 3gae_A 73 PAYDIVRLIVKKLPYS------SDIKDYIEEGLGNK-NITLTMLTVRILVNCFNNENWGVKLLES-NQVYKSIFETIDTE 144 (253)
T ss_dssp HHHHHHHHHGGGCSCG------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHTTCTTTHHHHHTS-HHHHTTHHHHSCSC
T ss_pred hHHHHHHHHHcCCchH------HHHHHHHHHhcCCC-chhHHHHHHHHHHHcccCCchHHHHHhc-chhHHHHHHHHHHH
Confidence 3555555555554432 22333332 23334 67788899999999988887 4444433 2233444443311
Q ss_pred -------CCHHHHHHHHHHHHHcccCCch-hhhHhhcCcHHHHHHHHcc----C----CChhHHHHHHHHHHHhhC
Q 037121 515 -------GTDCGKKNAVVAIFGLLLSQGN-HQKVLDAGTVPLLADILAS----S----NRTELITDSLAVLANLAE 574 (683)
Q Consensus 515 -------~~~~~~~~A~~aL~nLs~~~~n-~~~iv~~g~v~~Lv~lL~~----~----~~~~~~~~al~iL~nLa~ 574 (683)
.+...+..+++.++|++..... +. +......+++.+.. . .+.+....++-+|++|..
T Consensus 145 ~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 145 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 2456777888899999874221 11 12344556666631 1 367888889999999974
No 273
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=20.64 E-value=61 Score=24.47 Aligned_cols=44 Identities=9% Similarity=0.081 Sum_probs=31.3
Q ss_pred CCccCCCCcccCCCceec--cCcccccHHHHHHHHHh---CCCCCCCCCcc
Q 037121 278 EDFRCPISLELMTDPVTV--STGQTYDRSSIQKWLKA---GNMLCPKTGEK 323 (683)
Q Consensus 278 ~~f~CpIc~~~m~dPv~~--~cght~~r~cI~~w~~~---~~~~CP~c~~~ 323 (683)
..-.|.+|.+- +-++. .|...|-..|+...+.. |.+.||.|...
T Consensus 11 ~~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC--TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC--CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34579999863 33444 58888999998766654 67899999653
No 274
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.52 E-value=1.8e+02 Score=19.86 Aligned_cols=38 Identities=11% Similarity=0.158 Sum_probs=25.0
Q ss_pred CCCccCCCCcccCCCceeccCcccccHHHHHHHHH-h----CCCCCCCCCcccC
Q 037121 277 PEDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLK-A----GNMLCPKTGEKLT 325 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~-~----~~~~CP~c~~~l~ 325 (683)
...|.|++|...+... ..+..+.. . ....|+.|++.+.
T Consensus 10 ~k~~~C~~C~k~f~~~-----------~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 10 GKPYICQSCGKGFSRP-----------DHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp SCCEECSSSCCEESSH-----------HHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCCeECCCCCcccCCH-----------HHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 4468999988776643 34555543 2 2368999988764
No 275
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.42 E-value=1.1e+02 Score=19.86 Aligned_cols=33 Identities=12% Similarity=0.327 Sum_probs=20.0
Q ss_pred CCccCCCCcccCCCceeccCcccccHHHHHHHHHh----CCCCCCCCC
Q 037121 278 EDFRCPISLELMTDPVTVSTGQTYDRSSIQKWLKA----GNMLCPKTG 321 (683)
Q Consensus 278 ~~f~CpIc~~~m~dPv~~~cght~~r~cI~~w~~~----~~~~CP~c~ 321 (683)
..|.|++|...+... ..+..+... ....||.|+
T Consensus 9 k~~~C~~C~k~f~~~-----------~~l~~H~~~H~~~~~~~C~~cg 45 (45)
T 2epq_A 9 KPYSCPVCGLRFKRK-----------DRMSYHVRSHDGSVGKSGPSSG 45 (45)
T ss_dssp CSSEETTTTEECSCH-----------HHHHHHHHHHSCCCCCCCCCCC
T ss_pred CCCcCCCCCcccCCH-----------HHHHHHHHHccCCCCCCCcCCC
Confidence 358898888776643 333333332 346788885
No 276
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=20.34 E-value=40 Score=27.37 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=34.5
Q ss_pred CCCccCCCCcccCCCc-eeccCcccccHHHHHHHHHhCCCCCCCCCcccC
Q 037121 277 PEDFRCPISLELMTDP-VTVSTGQTYDRSSIQKWLKAGNMLCPKTGEKLT 325 (683)
Q Consensus 277 ~~~f~CpIc~~~m~dP-v~~~cght~~r~cI~~w~~~~~~~CP~c~~~l~ 325 (683)
++-|.|..|...+.+. ....-|..||..|..+. -...|..|++++.
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~---~~~~C~~C~~~I~ 77 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTRE---DSPKCKGCFKAIV 77 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC---CCCBCSSSCCBCC
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhhh---cCCccccCCCccc
Confidence 4679999999988654 34567899999886432 2468999988775
No 277
>3kat_A Nacht, LRR and PYD domains-containing protein 1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 3.10A {Homo sapiens}
Probab=20.30 E-value=1.2e+02 Score=25.37 Aligned_cols=57 Identities=7% Similarity=-0.017 Sum_probs=45.8
Q ss_pred hhhhhHHHHHHHHhhhHHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHcccCc
Q 037121 50 TQRRNAREAIRQIGILLIFFEEIRDRGLNLSDLVVLCFSELHLTFQKVQFLMEDCTREG 108 (683)
Q Consensus 50 ~~k~~~~~l~r~~~ll~~lleel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~~ 108 (683)
+-+++=..|+.++.-+.++|++|.. + -+.+.-......-...-++++.|+..-...|
T Consensus 21 fv~~hR~~Li~rv~~V~~ILD~Ll~-~-VLteee~e~I~ae~T~q~k~R~Lld~v~~kG 77 (107)
T 3kat_A 21 FVDQYREQLIARVTSVEVVLDKLHG-Q-VLSQEQYERVLAENTRPSQMRKLFSLSQSWD 77 (107)
T ss_dssp HHHHTHHHHHTTCCCHHHHHHHHTT-T-TSCHHHHHHHHHCCSHHHHHHHHHHGGGGCC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH-h-hCCHHHHHHHHhCCCCHHHHHHHHHHhhcCC
Confidence 6789999999999999999999985 4 6788777777666677788999987754234
No 278
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=20.18 E-value=24 Score=21.11 Aligned_cols=12 Identities=25% Similarity=0.858 Sum_probs=9.5
Q ss_pred ccCCCCcccCCC
Q 037121 280 FRCPISLELMTD 291 (683)
Q Consensus 280 f~CpIc~~~m~d 291 (683)
..||+|++.|.-
T Consensus 7 vqcpvcqq~mpa 18 (29)
T 3vhs_A 7 VQCPVCQQMMPA 18 (29)
T ss_dssp EECTTTCCEEEG
T ss_pred eeChHHHHhCcH
Confidence 469999998854
No 279
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=20.16 E-value=6.6e+02 Score=25.08 Aligned_cols=147 Identities=16% Similarity=0.097 Sum_probs=92.1
Q ss_pred hHHHHHhhhcC------CHHHHHHHHHHHHHcccCCchhhhHhhcCcHHHHHHHHc-cCCChhHHHHHHHHHHHhh-CCh
Q 037121 505 IPALVKLIEEG------TDCGKKNAVVAIFGLLLSQGNHQKVLDAGTVPLLADILA-SSNRTELITDSLAVLANLA-EDI 576 (683)
Q Consensus 505 i~~Lv~lL~~~------~~~~~~~A~~aL~nLs~~~~n~~~iv~~g~v~~Lv~lL~-~~~~~~~~~~al~iL~nLa-~~~ 576 (683)
+....++++++ +......|+-.|--++.+-..-.+++++. .+.|-.++. ....+.+.+.|..+|+.-- .+|
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCH
Confidence 34455666666 33456677888888877666556666543 344444432 2345678888998888655 478
Q ss_pred hhHHHHHhcCC--hHHHHHhhcc----C--CChHHHHHHHHHHHHHhcCChHHHHHHHhcCCCcHHHHHHhHhcC--CHH
Q 037121 577 QGTSTILKTSA--LPVIIGLLQT----L--TSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDG--TSQ 646 (683)
Q Consensus 577 ~~~~~i~~~g~--i~~Lv~lL~~----~--~s~~~ke~A~~~L~~L~~~~~~~~~~~l~~~~g~i~~L~~Ll~~g--~~~ 646 (683)
.....|.+.-. +..+..-|.. + .+......-+++|-.|...+ ... . ...+..|.+++.-+ ++.
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-~~F----~--~~~m~~L~~ly~~~~~d~~ 175 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS-EDL----P--IYSTVVLQNVYERNNKDKQ 175 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-TTC--------CCHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh-Hhh----h--hccHHHHHHHHccCCCCHH
Confidence 77777765432 5555543333 1 13456667778888888765 211 1 23467777777777 999
Q ss_pred HHHHHHHHHHHHH
Q 037121 647 ARKKARSLIKILH 659 (683)
Q Consensus 647 ~k~~A~~lL~~l~ 659 (683)
+|.++..++..+-
T Consensus 176 ~k~Kvl~li~d~f 188 (315)
T 3qml_C 176 LQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999887544
Done!