Query 037124
Match_columns 110
No_of_seqs 127 out of 1030
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 08:54:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037124.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037124hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1441 Glucose-6-phosphate/ph 99.9 2.3E-25 5.1E-30 172.2 4.6 109 1-109 196-316 (316)
2 PF03151 TPT: Triose-phosphate 99.9 1.3E-23 2.9E-28 144.5 10.7 100 1-100 36-153 (153)
3 PTZ00343 triose or hexose phos 99.7 1.7E-16 3.7E-21 123.8 12.3 100 3-102 232-350 (350)
4 KOG1444 Nucleotide-sugar trans 99.6 5.6E-15 1.2E-19 113.9 8.6 107 2-109 189-309 (314)
5 TIGR00817 tpt Tpt phosphate/ph 99.6 2.2E-14 4.7E-19 108.9 10.5 107 2-108 177-301 (302)
6 KOG1443 Predicted integral mem 99.5 1.9E-14 4E-19 110.9 8.0 100 1-100 198-315 (349)
7 PF08449 UAA: UAA transporter 99.5 2.7E-13 5.9E-18 103.4 12.6 105 2-106 186-303 (303)
8 KOG1442 GDP-fucose transporter 99.5 1.3E-14 2.8E-19 110.7 2.6 109 2-110 217-337 (347)
9 COG5070 VRG4 Nucleotide-sugar 99.3 4.2E-11 9.1E-16 89.7 9.3 108 2-109 187-305 (309)
10 KOG1580 UDP-galactose transpor 99.0 1.2E-09 2.5E-14 82.6 7.8 107 2-108 204-321 (337)
11 KOG1583 UDP-N-acetylglucosamin 98.8 9.4E-09 2E-13 78.8 4.9 82 25-106 239-320 (330)
12 KOG1581 UDP-galactose transpor 98.4 2.1E-06 4.6E-11 66.5 8.4 104 2-105 204-318 (327)
13 PLN00411 nodulin MtN21 family 98.0 0.00016 3.5E-09 57.0 12.0 66 44-109 272-337 (358)
14 TIGR00803 nst UDP-galactose tr 98.0 1.7E-05 3.7E-10 57.8 5.8 58 41-98 165-222 (222)
15 PRK10532 threonine and homoser 97.9 0.00035 7.5E-09 53.1 11.8 61 44-104 225-285 (293)
16 PF00892 EamA: EamA-like trans 97.8 0.00033 7.3E-09 45.2 9.5 72 28-99 53-125 (126)
17 PF06027 DUF914: Eukaryotic pr 97.8 0.00012 2.7E-09 57.4 8.3 101 4-104 200-309 (334)
18 PLN00411 nodulin MtN21 family 97.8 0.00056 1.2E-08 54.0 11.1 89 10-98 52-154 (358)
19 PF04142 Nuc_sug_transp: Nucle 97.7 0.00023 5E-09 53.4 8.4 80 25-104 14-93 (244)
20 TIGR00950 2A78 Carboxylate/Ami 97.7 0.0016 3.5E-08 47.8 11.8 92 8-99 26-118 (260)
21 TIGR03340 phn_DUF6 phosphonate 97.6 0.0016 3.4E-08 49.1 11.7 95 5-99 32-134 (281)
22 PRK11689 aromatic amino acid e 97.6 0.0025 5.4E-08 48.4 12.8 72 28-99 215-286 (295)
23 TIGR00950 2A78 Carboxylate/Ami 97.6 0.0017 3.6E-08 47.6 10.9 87 9-95 167-259 (260)
24 TIGR00688 rarD rarD protein. T 97.5 0.0035 7.7E-08 46.3 12.0 69 29-97 71-139 (256)
25 PRK15430 putative chlorampheni 97.5 0.0046 1E-07 47.0 12.4 69 30-98 75-143 (296)
26 PRK11272 putative DMT superfam 97.5 0.0058 1.3E-07 46.3 12.9 65 40-104 225-289 (292)
27 PRK15430 putative chlorampheni 97.4 0.0039 8.4E-08 47.4 11.2 71 30-100 215-285 (296)
28 PF13536 EmrE: Multidrug resis 97.3 0.0055 1.2E-07 40.3 9.3 74 28-102 34-108 (113)
29 TIGR00817 tpt Tpt phosphate/ph 97.1 0.0042 9.1E-08 47.1 8.6 71 28-98 65-135 (302)
30 PRK11453 O-acetylserine/cystei 97.1 0.027 5.8E-07 42.8 12.6 72 28-99 214-286 (299)
31 KOG1582 UDP-galactose transpor 97.0 0.0039 8.5E-08 48.4 7.2 75 28-102 260-334 (367)
32 PRK02971 4-amino-4-deoxy-L-ara 96.6 0.023 4.9E-07 38.9 8.1 72 32-105 51-127 (129)
33 PRK09541 emrE multidrug efflux 96.6 0.085 1.8E-06 35.2 10.5 47 55-101 58-104 (110)
34 TIGR03340 phn_DUF6 phosphonate 96.4 0.011 2.3E-07 44.5 6.3 70 28-97 211-280 (281)
35 PRK11431 multidrug efflux syst 96.3 0.14 3.1E-06 33.9 10.5 46 53-98 55-100 (105)
36 PTZ00343 triose or hexose phos 96.3 0.034 7.4E-07 43.5 8.7 72 27-98 113-184 (350)
37 PF08449 UAA: UAA transporter 96.3 0.023 5E-07 43.3 7.4 79 28-106 64-142 (303)
38 PRK10452 multidrug efflux syst 96.3 0.09 2E-06 35.7 9.5 49 54-102 57-105 (120)
39 COG0697 RhaT Permeases of the 96.2 0.05 1.1E-06 39.7 8.8 74 28-101 214-288 (292)
40 PRK15051 4-amino-4-deoxy-L-ara 96.2 0.12 2.6E-06 34.3 9.6 42 55-97 65-106 (111)
41 COG2076 EmrE Membrane transpor 96.1 0.13 2.9E-06 34.3 9.5 48 53-100 56-103 (106)
42 PRK10650 multidrug efflux syst 96.1 0.21 4.5E-06 33.4 10.4 44 54-97 62-105 (109)
43 PF06027 DUF914: Eukaryotic pr 96.1 0.034 7.4E-07 43.8 7.5 71 28-98 79-149 (334)
44 COG2510 Predicted membrane pro 96.0 0.022 4.7E-07 39.6 5.3 71 27-97 66-136 (140)
45 KOG3912 Predicted integral mem 96.0 0.011 2.4E-07 46.1 4.2 62 40-101 274-335 (372)
46 PRK11689 aromatic amino acid e 95.7 0.099 2.2E-06 39.6 8.4 69 30-98 63-135 (295)
47 COG0697 RhaT Permeases of the 95.6 0.14 3E-06 37.3 8.7 73 29-101 71-144 (292)
48 PRK11272 putative DMT superfam 95.4 0.42 9.1E-06 36.1 11.1 71 28-99 68-140 (292)
49 KOG2234 Predicted UDP-galactos 95.3 0.14 3E-06 40.7 8.3 72 28-99 92-163 (345)
50 COG2962 RarD Predicted permeas 95.0 0.88 1.9E-05 35.4 11.5 79 26-105 209-288 (293)
51 TIGR00776 RhaT RhaT L-rhamnose 94.4 0.34 7.4E-06 36.9 8.1 69 31-99 214-287 (290)
52 PRK11453 O-acetylserine/cystei 94.3 0.46 1E-05 36.0 8.7 56 44-99 75-131 (299)
53 COG2962 RarD Predicted permeas 94.1 1.8 3.8E-05 33.8 11.5 70 27-97 71-141 (293)
54 PF00893 Multi_Drug_Res: Small 93.9 0.87 1.9E-05 29.1 8.2 54 37-90 37-92 (93)
55 TIGR00776 RhaT RhaT L-rhamnose 91.9 0.61 1.3E-05 35.5 6.1 76 27-102 58-138 (290)
56 KOG2765 Predicted membrane pro 90.9 0.2 4.3E-06 40.4 2.6 74 29-102 160-233 (416)
57 PF04657 DUF606: Protein of un 90.1 4.1 9E-05 27.9 8.4 70 27-96 63-137 (138)
58 KOG2234 Predicted UDP-galactos 88.1 2.1 4.6E-05 34.1 6.4 74 28-105 254-327 (345)
59 KOG2765 Predicted membrane pro 83.4 3 6.5E-05 33.8 5.2 98 4-101 283-391 (416)
60 KOG4510 Permease of the drug/m 81.5 1.4 3E-05 34.5 2.6 66 32-97 101-166 (346)
61 PF07857 DUF1632: CEO family ( 78.6 3.8 8.3E-05 31.2 4.2 81 22-105 49-139 (254)
62 PF04142 Nuc_sug_transp: Nucle 77.9 14 0.0003 27.6 7.0 59 28-90 185-243 (244)
63 PF07444 Ycf66_N: Ycf66 protei 74.8 4.6 0.0001 25.8 3.1 30 79-108 4-33 (84)
64 PF10639 UPF0546: Uncharacteri 73.2 2.8 6.1E-05 28.2 2.0 41 56-96 70-110 (113)
65 COG5006 rhtA Threonine/homoser 67.1 58 0.0013 25.3 9.0 56 45-100 227-282 (292)
66 PF10855 DUF2648: Protein of u 63.2 7.5 0.00016 20.5 1.9 21 88-108 6-26 (33)
67 KOG1581 UDP-galactose transpor 61.2 19 0.00041 28.5 4.6 78 28-105 83-160 (327)
68 KOG2766 Predicted membrane pro 61.1 29 0.00062 27.2 5.5 55 47-103 248-302 (336)
69 PF11346 DUF3149: Protein of u 60.1 21 0.00045 19.9 3.5 30 75-104 6-36 (42)
70 PF05653 Mg_trans_NIPA: Magnes 59.3 29 0.00062 26.8 5.4 60 35-97 60-119 (300)
71 COG3238 Uncharacterized protei 54.5 55 0.0012 23.1 5.7 73 28-100 69-146 (150)
72 KOG4812 Golgi-associated prote 54.3 57 0.0012 25.0 6.0 32 28-62 160-191 (262)
73 PF06800 Sugar_transport: Suga 52.0 1.1E+02 0.0023 23.6 7.4 77 28-106 45-128 (269)
74 KOG4314 Predicted carbohydrate 45.4 13 0.00029 28.0 1.4 59 42-100 67-125 (290)
75 PF14981 FAM165: FAM165 family 45.2 27 0.00059 20.0 2.4 21 87-107 19-39 (51)
76 PF05961 Chordopox_A13L: Chord 44.3 30 0.00065 21.3 2.6 21 84-104 6-26 (68)
77 PF06800 Sugar_transport: Suga 43.2 1.1E+02 0.0025 23.5 6.3 65 32-96 199-267 (269)
78 PF05545 FixQ: Cbb3-type cytoc 40.1 25 0.00055 19.6 1.8 17 88-104 18-34 (49)
79 KOG3912 Predicted integral mem 38.4 72 0.0016 25.4 4.6 48 50-97 108-155 (372)
80 PHA03049 IMV membrane protein; 37.6 43 0.00092 20.6 2.6 22 83-104 5-26 (68)
81 PF04342 DUF486: Protein of un 36.5 39 0.00084 22.6 2.5 28 68-95 76-103 (108)
82 KOG2766 Predicted membrane pro 33.4 2.8 6E-05 32.7 -3.8 56 42-97 92-147 (336)
83 cd01324 cbb3_Oxidase_CcoQ Cyto 33.1 45 0.00097 18.9 2.1 19 88-106 19-37 (48)
84 PF01618 MotA_ExbB: MotA/TolQ/ 30.6 56 0.0012 22.0 2.6 23 84-106 106-128 (139)
85 COG0342 SecD Preprotein transl 29.2 2.5E+02 0.0054 23.6 6.6 65 28-93 342-406 (506)
86 PF05337 CSF-1: Macrophage col 25.5 23 0.0005 27.5 0.0 24 81-104 231-254 (285)
87 COG3296 Uncharacterized protei 25.2 1.7E+02 0.0037 20.4 4.2 31 66-96 77-107 (143)
88 KOG1580 UDP-galactose transpor 25.0 1E+02 0.0023 23.9 3.4 69 33-101 89-158 (337)
89 PRK10532 threonine and homoser 25.0 3E+02 0.0064 20.6 8.1 18 83-100 145-162 (293)
90 PF15055 DUF4536: Domain of un 24.5 48 0.001 18.9 1.2 22 85-106 8-29 (47)
91 KOG4782 Predicted membrane pro 24.1 47 0.001 21.8 1.2 24 77-100 58-81 (108)
92 PF03773 DUF318: Predicted per 24.1 1.8E+02 0.004 22.2 4.8 53 52-104 84-137 (307)
93 TIGR01167 LPXTG_anchor LPXTG-m 23.9 79 0.0017 15.7 1.9 10 81-90 11-20 (34)
94 TIGR00803 nst UDP-galactose tr 23.5 1.7E+02 0.0036 20.9 4.2 43 60-102 10-52 (222)
95 TIGR02797 exbB tonB-system ene 22.8 89 0.0019 22.8 2.6 22 84-105 170-191 (211)
96 TIGR02805 exbB2 tonB-system en 22.2 1.4E+02 0.0029 20.8 3.3 23 84-106 106-128 (138)
97 COG0818 DgkA Diacylglycerol ki 21.4 2.8E+02 0.006 18.9 6.9 61 9-69 36-100 (123)
98 PRK10801 colicin uptake protei 20.6 1E+02 0.0022 22.9 2.6 23 84-106 175-197 (227)
99 PRK11387 S-methylmethionine tr 20.4 3.5E+02 0.0075 21.7 5.8 23 84-106 438-460 (471)
No 1
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.91 E-value=2.3e-25 Score=172.17 Aligned_cols=109 Identities=39% Similarity=0.555 Sum_probs=97.0
Q ss_pred ChhHHHHhHHHHHHHH-HHHHHHhHHHH-----------HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHH
Q 037124 1 MNLLVYMALMAASIFL-PFTLYIEGIFI-----------VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALA 68 (110)
Q Consensus 1 ~~ll~~~sp~~~~~l~-~~~~~~E~~~~-----------~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~ 68 (110)
+|+++|++|+++..++ |.+...|++.. ...++++.+++|++|++.|+++++|||+|++|+|++|++++
T Consensus 196 ~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~v 275 (316)
T KOG1441|consen 196 MNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVV 275 (316)
T ss_pred hHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEE
Confidence 5899999999999999 87777776332 22334444999999999999999999999999999999999
Q ss_pred HHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhhhhhcc
Q 037124 69 AVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKIST 109 (110)
Q Consensus 69 i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~~k~~~ 109 (110)
+..|+++|+||+|+.|+.|++++++|+++|++.|.|+|.++
T Consensus 276 i~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~~ 316 (316)
T KOG1441|consen 276 IVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKGK 316 (316)
T ss_pred EEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 99999999999999999999999999999999999988653
No 2
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.91 E-value=1.3e-23 Score=144.48 Aligned_cols=100 Identities=33% Similarity=0.560 Sum_probs=93.8
Q ss_pred ChhHHHHhHHHHHHHHHHHHHHhHHH------------------HHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhh
Q 037124 1 MNLLVYMALMAASIFLPFTLYIEGIF------------------IVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGN 62 (110)
Q Consensus 1 ~~ll~~~sp~~~~~l~~~~~~~E~~~------------------~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~ 62 (110)
+++++|++|.+++.++|.++..|+++ .+..++.+|++++++|+++|+++++|||+|++|+|+
T Consensus 36 ~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~ 115 (153)
T PF03151_consen 36 LNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGN 115 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHH
Confidence 37899999999999999999988743 256778999999999999999999999999999999
Q ss_pred hhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHH
Q 037124 63 AKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSK 100 (110)
Q Consensus 63 ~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~ 100 (110)
+|+++++++|+++|||++|+.++.|+.+++.|..+|+|
T Consensus 116 ~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 116 VKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 99999999999999999999999999999999999986
No 3
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.71 E-value=1.7e-16 Score=123.77 Aligned_cols=100 Identities=27% Similarity=0.429 Sum_probs=89.8
Q ss_pred hHHHHhHHHHHHHHHHHHHHhHHH-------------------HHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhh
Q 037124 3 LLVYMALMAASIFLPFTLYIEGIF-------------------IVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNA 63 (110)
Q Consensus 3 ll~~~sp~~~~~l~~~~~~~E~~~-------------------~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~ 63 (110)
.+.+.++.++++++|+.+..|++. ++..++.+|+.+|++|.++|++++++||+|+++.|++
T Consensus 232 ~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~l 311 (350)
T PTZ00343 232 IYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTL 311 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 556678999999999988777531 1335678999999999999999999999999999999
Q ss_pred hhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHH
Q 037124 64 KAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVK 102 (110)
Q Consensus 64 K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k 102 (110)
|+++.+++|+++|||++|+.+++|.++++.|.++|++.|
T Consensus 312 k~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 312 KRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999875
No 4
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=5.6e-15 Score=113.88 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=94.7
Q ss_pred hhHHHHhHHHHHHHHHHHHHHhH-H------------HHHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHH
Q 037124 2 NLLVYMALMAASIFLPFTLYIEG-I------------FIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALA 68 (110)
Q Consensus 2 ~ll~~~sp~~~~~l~~~~~~~E~-~------------~~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~ 68 (110)
++++|++-.+...+....+++|. + ..+..+.+||+++|..|++.++|...+|++|++++| +|+...
T Consensus 189 ~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG-~~n~l~ 267 (314)
T KOG1444|consen 189 GLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVG-AKNKLL 267 (314)
T ss_pred eEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehh-hhhhHH
Confidence 46789999999998888876542 2 247789999999999999999999999999999999 999999
Q ss_pred HHHhHhhccCc-cchhhHHHHHHHHHHHHHHHHHHhhhhhcc
Q 037124 69 AVVLVLIFKNP-VTVMGMTEFAVTTMIVVLYSKVKKRFKIST 109 (110)
Q Consensus 69 i~~s~~~fg~~-~t~~~~~G~~i~l~G~~~Ys~~k~~~k~~~ 109 (110)
..++.+.+||. +++.|.+|+.+.+.|..+|++.+.|+|-++
T Consensus 268 t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~ 309 (314)
T KOG1444|consen 268 TYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQP 309 (314)
T ss_pred HHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence 99999988875 899999999999999999999998887554
No 5
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.57 E-value=2.2e-14 Score=108.88 Aligned_cols=107 Identities=23% Similarity=0.254 Sum_probs=89.5
Q ss_pred hhHHHHhHHHHHHHHHHHHHHhHHH-----------------HHHHHHHHH-HHHHHHHHHHHHhHhccchhHHHHhhhh
Q 037124 2 NLLVYMALMAASIFLPFTLYIEGIF-----------------IVYLLLGNA-TIAYLVILTKFFVKKHTCTLTLQVLGNA 63 (110)
Q Consensus 2 ~ll~~~sp~~~~~l~~~~~~~E~~~-----------------~~~~l~~sg-~~af~~n~~~f~~i~~tS~lT~sV~g~~ 63 (110)
++..|+.+.+++.++|.+...|++. .+...+..+ ...+..|...|..++++||.|.++.+.+
T Consensus 177 ~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l 256 (302)
T TIGR00817 177 NLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCM 256 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhh
Confidence 4678899999999999988776421 111122333 3566788999999999999999999999
Q ss_pred hhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhhhhhc
Q 037124 64 KAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKIS 108 (110)
Q Consensus 64 K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~~k~~ 108 (110)
|.+..+++|++++||++|+.+++|.++++.|..+|++.|.|+|.+
T Consensus 257 ~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~ 301 (302)
T TIGR00817 257 KRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKP 301 (302)
T ss_pred hhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence 999999999999999999999999999999999999988776643
No 6
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.55 E-value=1.9e-14 Score=110.91 Aligned_cols=100 Identities=20% Similarity=0.392 Sum_probs=92.6
Q ss_pred ChhHHHHhHHHHHHHHHHHHHHhHHH---------------H---HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhh
Q 037124 1 MNLLVYMALMAASIFLPFTLYIEGIF---------------I---VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGN 62 (110)
Q Consensus 1 ~~ll~~~sp~~~~~l~~~~~~~E~~~---------------~---~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~ 62 (110)
++.+++++|++.+.++|..+.+|++. + ...+.+.|.++|++-.++|.++.+||.+|.|++|+
T Consensus 198 ~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI 277 (349)
T KOG1443|consen 198 IDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGI 277 (349)
T ss_pred eeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHH
Confidence 36789999999999999999999842 1 44678899999999999999999999999999999
Q ss_pred hhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHH
Q 037124 63 AKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSK 100 (110)
Q Consensus 63 ~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~ 100 (110)
+|++.++.++..+-+|.+|..|+.|..+++.|+..|..
T Consensus 278 ~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 278 VKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999943
No 7
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.52 E-value=2.7e-13 Score=103.44 Aligned_cols=105 Identities=21% Similarity=0.290 Sum_probs=94.9
Q ss_pred hhHHHHhHHHHHHHHHHHHH--H-hH----------HHHHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHH
Q 037124 2 NLLVYMALMAASIFLPFTLY--I-EG----------IFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALA 68 (110)
Q Consensus 2 ~ll~~~sp~~~~~l~~~~~~--~-E~----------~~~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~ 68 (110)
|+++|++.++.+.+++.... . |. |+.+..++++++.+...+...+.+++++||+|.++++++|+.++
T Consensus 186 ~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~s 265 (303)
T PF08449_consen 186 ELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLS 265 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHH
Confidence 67899999999998877776 2 32 34577788999999999999999999999999999999999999
Q ss_pred HHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhhhh
Q 037124 69 AVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFK 106 (110)
Q Consensus 69 i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~~k 106 (110)
+++|+++||+++++.+++|.++.+.|..+|++.|+|+|
T Consensus 266 illS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 266 ILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN 303 (303)
T ss_pred HHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999875
No 8
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.3e-14 Score=110.74 Aligned_cols=109 Identities=23% Similarity=0.196 Sum_probs=98.2
Q ss_pred hhHHHHhHHHHHHHHHHHHHH-hH-----------HHHHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHH
Q 037124 2 NLLVYMALMAASIFLPFTLYI-EG-----------IFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAA 69 (110)
Q Consensus 2 ~ll~~~sp~~~~~l~~~~~~~-E~-----------~~~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i 69 (110)
.+-+|++..+.+..+|...+. |. .++|..+.+||+++|.+|+..++-|+.|||+||+|.|+.|.+.+.
T Consensus 217 ~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQT 296 (347)
T KOG1442|consen 217 RLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQT 296 (347)
T ss_pred hhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHH
Confidence 356899999999999988765 43 136889999999999999999999999999999999999999999
Q ss_pred HHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhhhhhccC
Q 037124 70 VVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKISTH 110 (110)
Q Consensus 70 ~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~~k~~~~ 110 (110)
++++.+++|.-+..-+.|-.+.+.|...|++.|.+|...+|
T Consensus 297 vlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~ 337 (347)
T KOG1442|consen 297 VLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKAS 337 (347)
T ss_pred HHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999998775544
No 9
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.26 E-value=4.2e-11 Score=89.69 Aligned_cols=108 Identities=14% Similarity=0.238 Sum_probs=99.3
Q ss_pred hhHHHHhHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHH
Q 037124 2 NLLVYMALMAASIFLPFTLYIEGI-----------FIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAV 70 (110)
Q Consensus 2 ~ll~~~sp~~~~~l~~~~~~~E~~-----------~~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~ 70 (110)
|.+||++.++...++..++.+|.. +-...+.+||++++...+++-|+++.||+.|++.+|.+++....+
T Consensus 187 dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~al 266 (309)
T COG5070 187 DTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIAL 266 (309)
T ss_pred hHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHH
Confidence 679999999999999999999862 236688999999999999999999999999999999999999999
Q ss_pred HhHhhccCccchhhHHHHHHHHHHHHHHHHHHhhhhhcc
Q 037124 71 VLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKIST 109 (110)
Q Consensus 71 ~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~~k~~~ 109 (110)
.|.++||+|++.+.+..+.+.+.....|+++|.+++.+|
T Consensus 267 aGlvffdap~nf~si~sillGflsg~iYavaks~k~q~q 305 (309)
T COG5070 267 AGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQ 305 (309)
T ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999988765544
No 10
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.02 E-value=1.2e-09 Score=82.62 Aligned_cols=107 Identities=15% Similarity=0.136 Sum_probs=90.4
Q ss_pred hhHHHHhHHHHHHHHHHHHHH-hHH----------HHHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHH
Q 037124 2 NLLVYMALMAASIFLPFTLYI-EGI----------FIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAV 70 (110)
Q Consensus 2 ~ll~~~sp~~~~~l~~~~~~~-E~~----------~~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~ 70 (110)
++++|++-++.+.+....++. |.. ..++.+.+-++.+.+-..+.|..+...+|||.||+-+.|+..+++
T Consensus 204 ~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil 283 (337)
T KOG1580|consen 204 SMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTIL 283 (337)
T ss_pred hhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHH
Confidence 578899999999987766654 432 347777777788888899999999999999999999999999999
Q ss_pred HhHhhccCccchhhHHHHHHHHHHHHHHHHHHhhhhhc
Q 037124 71 VLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKIS 108 (110)
Q Consensus 71 ~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~~k~~ 108 (110)
.|+++|+||++++|++|..+.+.|...-....++.++-
T Consensus 284 ~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~a~~t 321 (337)
T KOG1580|consen 284 ISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKKAPMT 321 (337)
T ss_pred HHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCcCccc
Confidence 99999999999999999999999998766655544443
No 11
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.77 E-value=9.4e-09 Score=78.84 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhh
Q 037124 25 IFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKR 104 (110)
Q Consensus 25 ~~~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~ 104 (110)
|+.|+.++.+++..+.+.-..|.+..+|++||.+++=++|+.+..++|+++|+||+|+..++|..+.+.|.++|+....+
T Consensus 239 P~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~ 318 (330)
T KOG1583|consen 239 PSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNH 318 (330)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred hh
Q 037124 105 FK 106 (110)
Q Consensus 105 ~k 106 (110)
.|
T Consensus 319 ~~ 320 (330)
T KOG1583|consen 319 PK 320 (330)
T ss_pred cc
Confidence 33
No 12
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.38 E-value=2.1e-06 Score=66.54 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=86.1
Q ss_pred hhHHHHhHHHHHHHHHH-----------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHH
Q 037124 2 NLLVYMALMAASIFLPF-----------TLYIEGIFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAV 70 (110)
Q Consensus 2 ~ll~~~sp~~~~~l~~~-----------~~~~E~~~~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~ 70 (110)
+++++++-..++....- .+..|-|+.++-+++=+.++-.-....|..+++-+|+|++..-+.|+.+.+.
T Consensus 204 ~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~ 283 (327)
T KOG1581|consen 204 HMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIM 283 (327)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHH
Confidence 56788888777764432 2223446677777666666667788899999999999999999999999999
Q ss_pred HhHhhccCccchhhHHHHHHHHHHHHHHHHHHhhh
Q 037124 71 VLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRF 105 (110)
Q Consensus 71 ~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~~ 105 (110)
+|.+.||++++..|+.|..+.+.|..+=.+.|+|+
T Consensus 284 lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~~ 318 (327)
T KOG1581|consen 284 LSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKKK 318 (327)
T ss_pred HHHHHhCCccchhhccCeeeehHHHHHHHHHHHhc
Confidence 99999999999999999999999999988877773
No 13
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.00 E-value=0.00016 Score=57.03 Aligned_cols=66 Identities=11% Similarity=0.043 Sum_probs=59.9
Q ss_pred HHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhhhhhcc
Q 037124 44 TKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFKIST 109 (110)
Q Consensus 44 ~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~~k~~~ 109 (110)
.-++.+++.+|..-++...+--+...++|++++||++++.+++|.++.+.|+++-++.|++|..||
T Consensus 272 lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~ 337 (358)
T PLN00411 272 IHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQ 337 (358)
T ss_pred HHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 455689999999999999999999999999999999999999999999999999888777665544
No 14
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=97.98 E-value=1.7e-05 Score=57.85 Aligned_cols=58 Identities=14% Similarity=0.016 Sum_probs=54.1
Q ss_pred HHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHH
Q 037124 41 VILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLY 98 (110)
Q Consensus 41 ~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Y 98 (110)
..++..+++++.++.+.+++...+.++..++|+++||+++|+.++.|..+.+.|.+.|
T Consensus 165 ~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 165 GGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred cCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 3455889999999999999999999999999999999999999999999999998776
No 15
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.90 E-value=0.00035 Score=53.05 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=56.0
Q ss_pred HHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhh
Q 037124 44 TKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKR 104 (110)
Q Consensus 44 ~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~ 104 (110)
.-+..+++.+|-+-++...+.-+..++.|++++||+.++.+++|.++.+.|.+.++...+|
T Consensus 225 l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 225 LEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4567899999999999999999999999999999999999999999999999999766444
No 16
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.84 E-value=0.00033 Score=45.21 Aligned_cols=72 Identities=19% Similarity=0.153 Sum_probs=61.7
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHH
Q 037124 28 VYLLLGNATI-AYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYS 99 (110)
Q Consensus 28 ~~~l~~sg~~-af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys 99 (110)
+......|.+ ...-+..-+...+++++-..+......-+...+.+++++||+.+..+++|..+.+.|..+-+
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 53 WLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3334444444 57778888889999999999999999999999999999999999999999999999998754
No 17
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.81 E-value=0.00012 Score=57.45 Aligned_cols=101 Identities=17% Similarity=0.125 Sum_probs=76.1
Q ss_pred HHHHhHHHHHHHHHHHHHHhHHHH---------HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHh
Q 037124 4 LVYMALMAASIFLPFTLYIEGIFI---------VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVL 74 (110)
Q Consensus 4 l~~~sp~~~~~l~~~~~~~E~~~~---------~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~ 74 (110)
+..++-...++..+....+|..++ ...++.-++.-|......-.+++.+||+.+++.=..-+.-.++.+++
T Consensus 200 lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~ 279 (334)
T PF06027_consen 200 LGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIF 279 (334)
T ss_pred HHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHH
Confidence 444555666666666666776432 33333344444455445556899999999999888889999999999
Q ss_pred hccCccchhhHHHHHHHHHHHHHHHHHHhh
Q 037124 75 IFKNPVTVMGMTEFAVTTMIVVLYSKVKKR 104 (110)
Q Consensus 75 ~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~ 104 (110)
+||+++++.-.+|.++.+.|...|+....+
T Consensus 280 ~f~~~~~~ly~~af~lIiiG~vvy~~~~~~ 309 (334)
T PF06027_consen 280 FFGYKFSWLYILAFALIIIGFVVYNLAESP 309 (334)
T ss_pred hcCccccHHHHHHHHHHHHHhheEEccCCc
Confidence 999999999999999999999999876443
No 18
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.75 E-value=0.00056 Score=54.00 Aligned_cols=89 Identities=12% Similarity=0.185 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHhH----H----HHHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhh------
Q 037124 10 MAASIFLPFTLYIEG----I----FIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLI------ 75 (110)
Q Consensus 10 ~~~~~l~~~~~~~E~----~----~~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~------ 75 (110)
++++.++|++...|. + +-+..+.+.|++++.++...+.-.+.|||-.-++....--+.+.++++++
T Consensus 52 iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~ 131 (358)
T PLN00411 52 LASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVS 131 (358)
T ss_pred HHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhh
Confidence 455666777665543 1 12455667777777788889999999999999999999999999999999
Q ss_pred ccCccchhhHHHHHHHHHHHHHH
Q 037124 76 FKNPVTVMGMTEFAVTTMIVVLY 98 (110)
Q Consensus 76 fg~~~t~~~~~G~~i~l~G~~~Y 98 (110)
++|+.+..+++|+.+++.|..+=
T Consensus 132 ~~er~~~~~~~G~~l~~~Gv~ll 154 (358)
T PLN00411 132 FKERSSVAKVMGTILSLIGALVV 154 (358)
T ss_pred hcccccHHHHHHHHHHHHHHHHH
Confidence 69999999999999999998763
No 19
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.74 E-value=0.00023 Score=53.43 Aligned_cols=80 Identities=19% Similarity=0.068 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhh
Q 037124 25 IFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKR 104 (110)
Q Consensus 25 ~~~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~ 104 (110)
++-...+.+.+++....|...|...+...|.|+++....|-+.+-+++++++|.+++.+||.++.+...|....+.....
T Consensus 14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 44467788999999999999999999999999999999999999999999999999999999999999999987765443
No 20
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.66 E-value=0.0016 Score=47.75 Aligned_cols=92 Identities=15% Similarity=0.012 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHH
Q 037124 8 ALMAASIFLPFTLYI-EGIFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMT 86 (110)
Q Consensus 8 sp~~~~~l~~~~~~~-E~~~~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~ 86 (110)
...+.+.+.|..... +..+....+..+++...+.+...+..++++++-+-++.-...-+.+..++.+++||+++.++++
T Consensus 26 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~ 105 (260)
T TIGR00950 26 LIFALLLLLPLLRRRPPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLL 105 (260)
T ss_pred HHHHHHHHHHHHHhccCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHH
Confidence 344445555543332 2223345556666666777888889999999988899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 037124 87 EFAVTTMIVVLYS 99 (110)
Q Consensus 87 G~~i~l~G~~~Ys 99 (110)
|+.+++.|..+..
T Consensus 106 gi~i~~~Gv~li~ 118 (260)
T TIGR00950 106 AAVLGLAGAVLLL 118 (260)
T ss_pred HHHHHHHhHHhhc
Confidence 9999999988754
No 21
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.64 E-value=0.0016 Score=49.08 Aligned_cols=95 Identities=14% Similarity=0.137 Sum_probs=75.4
Q ss_pred HHHhHHHHHHHHHHHHHH----hH----HHHHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhc
Q 037124 5 VYMALMAASIFLPFTLYI----EG----IFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIF 76 (110)
Q Consensus 5 ~~~sp~~~~~l~~~~~~~----E~----~~~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~f 76 (110)
.+.....++.+.|..... +. .+.+..++.++......+.+.+...+++++-.-++.....-+...+++++++
T Consensus 32 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~ 111 (281)
T TIGR03340 32 WWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTL 111 (281)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHH
Confidence 455566666777766542 11 1235567778888888888989999998888888888888999999999999
Q ss_pred cCccchhhHHHHHHHHHHHHHHH
Q 037124 77 KNPVTVMGMTEFAVTTMIVVLYS 99 (110)
Q Consensus 77 g~~~t~~~~~G~~i~l~G~~~Ys 99 (110)
||+.+..++.|..+++.|...=.
T Consensus 112 ~e~~~~~~~~g~~~~~~Gv~ll~ 134 (281)
T TIGR03340 112 GETLSPLAWLGILIITLGLLVLG 134 (281)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987643
No 22
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.64 E-value=0.0025 Score=48.42 Aligned_cols=72 Identities=17% Similarity=0.034 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHH
Q 037124 28 VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYS 99 (110)
Q Consensus 28 ~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys 99 (110)
+..++..|+....-...-+..+++.+|.+.++...+.-++.++++++++||++|+.+++|.++.+.|...-.
T Consensus 215 ~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 215 IIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHh
Confidence 333444555555556667889999999999999999999999999999999999999999999999986543
No 23
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.58 E-value=0.0017 Score=47.64 Aligned_cols=87 Identities=18% Similarity=0.132 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHH-HHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccch
Q 037124 9 LMAASIFLPFTLYIEGI-----FIVYLLLGNATIA-YLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTV 82 (110)
Q Consensus 9 p~~~~~l~~~~~~~E~~-----~~~~~l~~sg~~a-f~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~ 82 (110)
-.+.+.+.|.....|.+ +.+..++..|.++ ..-...-+..+++.++-+.++.....-+...+++++++||+.++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~ 246 (260)
T TIGR00950 167 LLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSL 246 (260)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 34455556665544321 2233344444433 34445567789999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHH
Q 037124 83 MGMTEFAVTTMIV 95 (110)
Q Consensus 83 ~~~~G~~i~l~G~ 95 (110)
.+++|..+.+.|.
T Consensus 247 ~~~~G~~li~~g~ 259 (260)
T TIGR00950 247 PQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999885
No 24
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.52 E-value=0.0035 Score=46.32 Aligned_cols=69 Identities=9% Similarity=0.039 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHH
Q 037124 29 YLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVL 97 (110)
Q Consensus 29 ~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~ 97 (110)
..+...|++....+.+-+..++++++-+-++....--+.+.+++++++||+++.+++.|..+++.|+.+
T Consensus 71 ~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~l 139 (256)
T TIGR00688 71 LSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVIS 139 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 346777877778888889999999999999999999999999999999999999999999999999874
No 25
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.47 E-value=0.0046 Score=46.97 Aligned_cols=69 Identities=10% Similarity=-0.010 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHH
Q 037124 30 LLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLY 98 (110)
Q Consensus 30 ~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Y 98 (110)
....+++.....+.+.|+.++++++-+-++....--+.+.+++++++||+++.+++.|..+++.|+.+-
T Consensus 75 ~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li 143 (296)
T PRK15430 75 MLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQ 143 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 344666667778899999999999999999999999999999999999999999999999999998764
No 26
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.47 E-value=0.0058 Score=46.28 Aligned_cols=65 Identities=11% Similarity=0.082 Sum_probs=57.7
Q ss_pred HHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhh
Q 037124 40 LVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKR 104 (110)
Q Consensus 40 ~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~ 104 (110)
.-...-+..+++.++-+.++.....-+...+.|++++||+.|+.+++|..+.+.|..+-+..++|
T Consensus 225 ~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~ 289 (292)
T PRK11272 225 IAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL 289 (292)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33446667889999999999999999999999999999999999999999999999998776554
No 27
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.40 E-value=0.0039 Score=47.37 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHH
Q 037124 30 LLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSK 100 (110)
Q Consensus 30 ~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~ 100 (110)
.+...|+.+-.-..+-+..+++.+|-+.+....+.-+..++.|++++||+.++.+++|.++.+.|......
T Consensus 215 ~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 215 LLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34444444445666788899999999999999999999999999999999999999999999877766543
No 28
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.25 E-value=0.0055 Score=40.29 Aligned_cols=74 Identities=12% Similarity=0.140 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHH
Q 037124 28 VYLLLGNATIAY-LVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVK 102 (110)
Q Consensus 28 ~~~l~~sg~~af-~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k 102 (110)
+......|.+.. .-+...++..+.+++ .-.+.-..--+...++|.++|+|++++.++.|..+++.|+..=.+.+
T Consensus 34 ~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 34 WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 344556566665 555666667777765 55577777888899999999999999999999999999998755543
No 29
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.11 E-value=0.0042 Score=47.07 Aligned_cols=71 Identities=11% Similarity=0.006 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHH
Q 037124 28 VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLY 98 (110)
Q Consensus 28 ~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Y 98 (110)
+..++..|++....+..++..++.+|+-+.++.....-+.+.+++.++++|+.+..++.|..+++.|...-
T Consensus 65 ~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 65 LKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 55566666667778889999999999999999999999999999999999999999999999999998753
No 30
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.07 E-value=0.027 Score=42.79 Aligned_cols=72 Identities=11% Similarity=-0.019 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHH
Q 037124 28 VYLLLGNATIAYLVILTK-FFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYS 99 (110)
Q Consensus 28 ~~~l~~sg~~af~~n~~~-f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys 99 (110)
+..++..|+++-...+.. +..+++.+|-+.++...+--+...+.|++++||++++.+++|..+.+.|...=.
T Consensus 214 ~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 214 ILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444 356788999999999999999999999999999999999999999999997743
No 31
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.97 E-value=0.0039 Score=48.45 Aligned_cols=75 Identities=17% Similarity=0.100 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHH
Q 037124 28 VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVK 102 (110)
Q Consensus 28 ~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k 102 (110)
....++=++.+|+-..+..-+++..+|++..-+-+.|+.+++++|+++|..|+|.+-.-|-.+...|+++=-+.|
T Consensus 260 yGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 260 YGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 344555556667777788889999999999999999999999999999999999999999999999998744433
No 32
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=96.59 E-value=0.023 Score=38.94 Aligned_cols=72 Identities=11% Similarity=0.017 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhh---HHHHHHhH--hhccCccchhhHHHHHHHHHHHHHHHHHHhhh
Q 037124 32 LGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKA---ALAAVVLV--LIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRF 105 (110)
Q Consensus 32 ~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~---v~~i~~s~--~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~~ 105 (110)
+..|+..+.+.+......-+.-|++. +..+=. +.....++ .+|||++|+.+++|.++.++|+..-+..++++
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~--Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~~ 127 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSR--AYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTKA 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHH--HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCCC
Confidence 44555555555444443333333332 222222 33444555 48999999999999999999999977655543
No 33
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.56 E-value=0.085 Score=35.22 Aligned_cols=47 Identities=6% Similarity=0.118 Sum_probs=39.9
Q ss_pred hHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHH
Q 037124 55 LTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKV 101 (110)
Q Consensus 55 lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~ 101 (110)
+.|.+-.-+-.+.+.+.|+++|||++|+.+++|+.+.+.|+..=+..
T Consensus 58 iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 58 IAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45566556677889999999999999999999999999999986543
No 34
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=96.45 E-value=0.011 Score=44.50 Aligned_cols=70 Identities=9% Similarity=0.004 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHH
Q 037124 28 VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVL 97 (110)
Q Consensus 28 ~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~ 97 (110)
+..+..+++.+..-...-+..+++.++-+.+....+--+..++.|++++||+.+..+++|.++.+.|+.+
T Consensus 211 ~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 211 LPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 3345556666666666777888888887777777777799999999999999999999999999999864
No 35
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.35 E-value=0.14 Score=33.89 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=41.5
Q ss_pred chhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHH
Q 037124 53 CTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLY 98 (110)
Q Consensus 53 S~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Y 98 (110)
=.+.|++=.-+-.+.+.+.|+++|||++|+.+++|+.+.+.|+..=
T Consensus 55 ~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 55 VGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 3567888888888999999999999999999999999999999874
No 36
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=96.33 E-value=0.034 Score=43.52 Aligned_cols=72 Identities=13% Similarity=0.086 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHH
Q 037124 27 IVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLY 98 (110)
Q Consensus 27 ~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Y 98 (110)
.+..++.-|++++..+...+..++.+|+-..++.-..--+.+.+++.+++||+.+.+++.|+.+.++|+.+=
T Consensus 113 ~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~ 184 (350)
T PTZ00343 113 FLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALA 184 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhe
Confidence 456677788888877888888899999988888888888899999999999999999999999999999763
No 37
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.29 E-value=0.023 Score=43.31 Aligned_cols=79 Identities=13% Similarity=0.026 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhhhh
Q 037124 28 VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRFK 106 (110)
Q Consensus 28 ~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~~k 106 (110)
+.....-+++-+.-+..+....+..|-=|+.+.-..|-+.+.+++.+++|++.+..++.+..+...|+..+...+.+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~ 142 (303)
T PF08449_consen 64 LKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS 142 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc
Confidence 3445556677778888899999999999999999999999999999999999999999999999999999887765433
No 38
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.28 E-value=0.09 Score=35.70 Aligned_cols=49 Identities=12% Similarity=0.219 Sum_probs=40.8
Q ss_pred hhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHH
Q 037124 54 TLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVK 102 (110)
Q Consensus 54 ~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k 102 (110)
.+.|.+-.-+-.+.+...|+++|||++|+.+++|+.+.+.|+..=+...
T Consensus 57 siAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 57 GVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 3456665556788899999999999999999999999999998865543
No 39
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.24 E-value=0.05 Score=39.66 Aligned_cols=74 Identities=19% Similarity=0.168 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHH
Q 037124 28 VYLLLGNATIAYL-VILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKV 101 (110)
Q Consensus 28 ~~~l~~sg~~af~-~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~ 101 (110)
+..+...|+++-. --..-+...++.++...+......-+.....++.++||+.+..+++|..+.+.|....+..
T Consensus 214 ~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 214 WLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 4445555555543 4555567889999999999998999999999999999999999999999999999998876
No 40
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=96.18 E-value=0.12 Score=34.30 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=35.5
Q ss_pred hHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHH
Q 037124 55 LTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVL 97 (110)
Q Consensus 55 lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~ 97 (110)
..+.+.. .--+.+...|+++|||++|+++++|+++.+.|+..
T Consensus 65 ~Ay~~~~-l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~ 106 (111)
T PRK15051 65 IAYPMLS-LNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVI 106 (111)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 3444444 66778899999999999999999999999999875
No 41
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.13 E-value=0.13 Score=34.30 Aligned_cols=48 Identities=15% Similarity=0.154 Sum_probs=42.2
Q ss_pred chhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHH
Q 037124 53 CTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSK 100 (110)
Q Consensus 53 S~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~ 100 (110)
=.+.|.+=.=+-.+.+...|+++|||++++.+++|+++.++|+..=+.
T Consensus 56 vgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 56 LGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 345678888888899999999999999999999999999999987544
No 42
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.11 E-value=0.21 Score=33.35 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=39.6
Q ss_pred hhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHH
Q 037124 54 TLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVL 97 (110)
Q Consensus 54 ~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~ 97 (110)
.+.|++=.-+-.+.+.+.|+++|||++|+.+++|+++.+.|+..
T Consensus 62 gvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~ 105 (109)
T PRK10650 62 SVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVM 105 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 45677777788899999999999999999999999999999876
No 43
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.08 E-value=0.034 Score=43.80 Aligned_cols=71 Identities=11% Similarity=0.075 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHH
Q 037124 28 VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLY 98 (110)
Q Consensus 28 ~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Y 98 (110)
|+.-++-|++=..-|+......+.||-.+.++....--+.+.++|+++.+++.++.+++|..++++|...=
T Consensus 79 ~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv 149 (334)
T PF06027_consen 79 WWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLV 149 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhe
Confidence 44444457888899999999999999999999999999999999999999999999999999999998753
No 44
>COG2510 Predicted membrane protein [Function unknown]
Probab=95.98 E-value=0.022 Score=39.59 Aligned_cols=71 Identities=14% Similarity=0.122 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHH
Q 037124 27 IVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVL 97 (110)
Q Consensus 27 ~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~ 97 (110)
.|..+.+||+.+=+--++-|+.+++--+=--.=.-..--++.+.+|+.++||+.|..+++|+.+..+|..+
T Consensus 66 ~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gail 136 (140)
T COG2510 66 SWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAIL 136 (140)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeee
Confidence 37778889876655556666665532111001111223367889999999999999999999999999765
No 45
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=95.95 E-value=0.011 Score=46.13 Aligned_cols=62 Identities=13% Similarity=0.202 Sum_probs=59.2
Q ss_pred HHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHH
Q 037124 40 LVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKV 101 (110)
Q Consensus 40 ~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~ 101 (110)
+.|++...+.++-|+.|..+.-.+|..++=++++..+.|.+...|+.|.++-+.|.+.|+-.
T Consensus 274 ffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~i 335 (372)
T KOG3912|consen 274 FFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQI 335 (372)
T ss_pred eeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999854
No 46
>PRK11689 aromatic amino acid exporter; Provisional
Probab=95.68 E-value=0.099 Score=39.64 Aligned_cols=69 Identities=9% Similarity=0.021 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHh----ccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHH
Q 037124 30 LLLGNATIAYLVILTKFFVKK----HTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLY 98 (110)
Q Consensus 30 ~l~~sg~~af~~n~~~f~~i~----~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Y 98 (110)
.++.+++.....+...|.-.+ .+++.+-++....--+.+.++++.+++|+++..+++|..+++.|..+=
T Consensus 63 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li 135 (295)
T PRK11689 63 YLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWV 135 (295)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhe
Confidence 344555544445554554443 456666677777778889999999999999999999999999998654
No 47
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=95.60 E-value=0.14 Score=37.33 Aligned_cols=73 Identities=18% Similarity=0.128 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhH-hhccCccchhhHHHHHHHHHHHHHHHHH
Q 037124 29 YLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLV-LIFKNPVTVMGMTEFAVTTMIVVLYSKV 101 (110)
Q Consensus 29 ~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~-~~fg~~~t~~~~~G~~i~l~G~~~Ys~~ 101 (110)
..++..++.....+..-+..++++++-+.++....--+.+.+++. ++++|+++.+++.|..+.+.|..+-...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~ 144 (292)
T COG0697 71 LLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLG 144 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecC
Confidence 455566666666667777779999999999999999999999996 6669999999999999999999876554
No 48
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=95.43 E-value=0.42 Score=36.09 Aligned_cols=71 Identities=8% Similarity=-0.096 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhH-hccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHH
Q 037124 28 VYLLLGNATIAY-LVILTKFFVK-KHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYS 99 (110)
Q Consensus 28 ~~~l~~sg~~af-~~n~~~f~~i-~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys 99 (110)
+......|.+.+ ..+...+... +.+++-.-++.-..--+.+.+++.+ +||+++.+++.|..+++.|..+-.
T Consensus 68 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~ 140 (292)
T PRK11272 68 WLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN 140 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh
Confidence 344445555543 3344445555 6666655667777777788888875 799999999999999999987653
No 49
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.34 E-value=0.14 Score=40.69 Aligned_cols=72 Identities=18% Similarity=0.078 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHH
Q 037124 28 VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYS 99 (110)
Q Consensus 28 ~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys 99 (110)
...+.+.+.+....|--.|....+-+|.|++|..++|-.-+-++++.+.+.+++.+||.-..+.+.|+..=+
T Consensus 92 ~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 92 TLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 445677788999999999999999999999999999999999999999999999999999999999998866
No 50
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=94.97 E-value=0.88 Score=35.41 Aligned_cols=79 Identities=24% Similarity=0.212 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-HhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhh
Q 037124 26 FIVYLLLGNATIAYLVILTKFFV-KKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKR 104 (110)
Q Consensus 26 ~~~~~l~~sg~~af~~n~~~f~~-i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~ 104 (110)
+.+..++++|... .+-+..|.. -++.+==|..+...+--....++++.+|||+++..+...++..-.|.+.|+....+
T Consensus 209 ~~~~LLv~aG~vT-avpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~ 287 (293)
T COG2962 209 SLWLLLVLAGLVT-AVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLY 287 (293)
T ss_pred hHHHHHHHhhHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666544 333333433 23333344555556667788999999999999999999999999999999987665
Q ss_pred h
Q 037124 105 F 105 (110)
Q Consensus 105 ~ 105 (110)
+
T Consensus 288 ~ 288 (293)
T COG2962 288 T 288 (293)
T ss_pred H
Confidence 3
No 51
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=94.39 E-value=0.34 Score=36.89 Aligned_cols=69 Identities=10% Similarity=0.017 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHhHh-ccchhHHHHhhhhhhHHHHHHhHhhccCccchhhH----HHHHHHHHHHHHHH
Q 037124 31 LLGNATIAYLVILTKFFVKK-HTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGM----TEFAVTTMIVVLYS 99 (110)
Q Consensus 31 l~~sg~~af~~n~~~f~~i~-~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~----~G~~i~l~G~~~Ys 99 (110)
..+.|++...-|..-+.-.+ +..+-+.++...+.-++.++.|++++||+.+++|. +|..+.+.|..+=.
T Consensus 214 ~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 214 NILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 34477775444555546667 89999999999999999999999999999999999 99999999987643
No 52
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=94.29 E-value=0.46 Score=35.98 Aligned_cols=56 Identities=13% Similarity=0.064 Sum_probs=42.0
Q ss_pred HHHHhHhcc-chhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHH
Q 037124 44 TKFFVKKHT-CTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYS 99 (110)
Q Consensus 44 ~~f~~i~~t-S~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys 99 (110)
..|...+++ ++-.-++....--+.+.++++++++|+++.++++|..+++.|..+=.
T Consensus 75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~ 131 (299)
T PRK11453 75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI 131 (299)
T ss_pred HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence 344555554 33344555556678889999999999999999999999999987543
No 53
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=94.15 E-value=1.8 Score=33.78 Aligned_cols=70 Identities=10% Similarity=0.048 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHH
Q 037124 27 IVYLLLGNATIAYLVILTKFF-VKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVL 97 (110)
Q Consensus 27 ~~~~l~~sg~~af~~n~~~f~-~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~ 97 (110)
.+..+.+++.+- ..|...|. .+..-..+.-|..=-+.-.+.+++|.++++|+++..|++-..++.+|+..
T Consensus 71 ~~~~~~l~a~li-~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~ 141 (293)
T COG2962 71 TLLMLALTALLI-GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLI 141 (293)
T ss_pred HHHHHHHHHHHH-HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 345555555544 67888875 55555677777777778889999999999999999999999999988754
No 54
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=93.94 E-value=0.87 Score=29.10 Aligned_cols=54 Identities=9% Similarity=0.103 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhHhccch--hHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHH
Q 037124 37 IAYLVILTKFFVKKHTCT--LTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAV 90 (110)
Q Consensus 37 ~af~~n~~~f~~i~~tS~--lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i 90 (110)
.++..++.-+...-+.=| +.+.+-.-+-.+.+.+.|+.+|||++|+.+++|+++
T Consensus 37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 344444444443333333 445555556678999999999999999999999875
No 55
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=91.92 E-value=0.61 Score=35.53 Aligned_cols=76 Identities=14% Similarity=0.069 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHh-hhhhhHHHHHHhHhhccCccchhh----HHHHHHHHHHHHHHHHH
Q 037124 27 IVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVL-GNAKAALAAVVLVLIFKNPVTVMG----MTEFAVTTMIVVLYSKV 101 (110)
Q Consensus 27 ~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~-g~~K~v~~i~~s~~~fg~~~t~~~----~~G~~i~l~G~~~Ys~~ 101 (110)
.+..-.++|++=-.-|++-|..+++++.=+-... ...--+...+.|.++|||+.+.++ .+|..+++.|.++.+..
T Consensus 58 ~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 58 IFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 3443445555544567777878777554333222 224445777899999999999999 99999999999997766
Q ss_pred H
Q 037124 102 K 102 (110)
Q Consensus 102 k 102 (110)
|
T Consensus 138 ~ 138 (290)
T TIGR00776 138 K 138 (290)
T ss_pred c
Confidence 5
No 56
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=90.86 E-value=0.2 Score=40.43 Aligned_cols=74 Identities=14% Similarity=0.075 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHH
Q 037124 29 YLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVK 102 (110)
Q Consensus 29 ~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k 102 (110)
..-+.=|.+=|.-|+.....++.||.-..++....-...++.++.++-+|++|..+.++..+.++|+.+=+..+
T Consensus 160 k~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~ 233 (416)
T KOG2765|consen 160 KLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGD 233 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecc
Confidence 34466688889999999999999999999999999999999999999999999999999999999987655543
No 57
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=90.08 E-value=4.1 Score=27.93 Aligned_cols=70 Identities=13% Similarity=0.210 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHH-HhHh-hc---cCccchhhHHHHHHHHHHHH
Q 037124 27 IVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAV-VLVL-IF---KNPVTVMGMTEFAVTTMIVV 96 (110)
Q Consensus 27 ~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~-~s~~-~f---g~~~t~~~~~G~~i~l~G~~ 96 (110)
.+++..++|+++-..-.+....+.+.++.+..+....-+.+.-. +-.+ +| ++++++.+.+|..+.+.|..
T Consensus 63 ~p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 63 VPWWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred CChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 36667779999999999999999999988887776665553322 2221 23 35689999999999999975
No 58
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=88.06 E-value=2.1 Score=34.06 Aligned_cols=74 Identities=20% Similarity=0.157 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhhh
Q 037124 28 VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRF 105 (110)
Q Consensus 28 ~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~~ 105 (110)
|...+.++.-|.+.. ++.++...+.-.-+-.+--+++.+.|+.+||-+.|..=.+|..+.+..+..|+..++++
T Consensus 254 w~vVl~~a~gGLlvs----~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 254 WLVVLLNAVGGLLVS----LVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHHHhccchhHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 555666666664433 46677777777777778888999999999999999999999999999999999777765
No 59
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=83.39 E-value=3 Score=33.85 Aligned_cols=98 Identities=11% Similarity=-0.008 Sum_probs=72.5
Q ss_pred HHHHhHHHHHHHHHHHHHHhH---HH--------HHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHh
Q 037124 4 LVYMALMAASIFLPFTLYIEG---IF--------IVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVL 72 (110)
Q Consensus 4 l~~~sp~~~~~l~~~~~~~E~---~~--------~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s 72 (110)
.-|...+..+.+.|.....+. ++ +...+..+++..+.=-+.=-+..-.||||+-++.=.+---+.++.-
T Consensus 283 fGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD 362 (416)
T KOG2765|consen 283 FGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFAD 362 (416)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHH
Confidence 346677778888877766543 11 2233344444455445555567778999999999888888888888
Q ss_pred HhhccCccchhhHHHHHHHHHHHHHHHHH
Q 037124 73 VLIFKNPVTVMGMTEFAVTTMIVVLYSKV 101 (110)
Q Consensus 73 ~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~ 101 (110)
+++=|.+.|+..++|..-.++|.+.=++.
T Consensus 363 ~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~ 391 (416)
T KOG2765|consen 363 VLIKGKHPSALYIIGSIPIFVGFVIVNIS 391 (416)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHHhheecc
Confidence 88889999999999999999999886654
No 60
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=81.45 E-value=1.4 Score=34.47 Aligned_cols=66 Identities=12% Similarity=0.149 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHH
Q 037124 32 LGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVL 97 (110)
Q Consensus 32 ~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~ 97 (110)
++-|+++|.--+-.|+...+-|----++.--.--+.++++++.+.+||.|..+..|..+++.|+.+
T Consensus 101 iLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVL 166 (346)
T KOG4510|consen 101 ILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVL 166 (346)
T ss_pred EeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEE
Confidence 444555554444455544433322222233345678999999999999999999999999999854
No 61
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=78.62 E-value=3.8 Score=31.22 Aligned_cols=81 Identities=7% Similarity=-0.102 Sum_probs=50.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHh-----hccCc-----cchhhHHHHHHH
Q 037124 22 IEGIFIVYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVL-----IFKNP-----VTVMGMTEFAVT 91 (110)
Q Consensus 22 ~E~~~~~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~-----~fg~~-----~t~~~~~G~~i~ 91 (110)
.|.|++..+-.++|.+=-.-|....-+++... +.+.=-+=....++.||. +||.+ -..+|++|.++.
T Consensus 49 ~~~p~f~p~amlgG~lW~~gN~~~vpii~~iG---Lglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~ 125 (254)
T PF07857_consen 49 LGFPPFYPWAMLGGALWATGNILVVPIIKTIG---LGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALV 125 (254)
T ss_pred cCCCcceeHHHhhhhhhhcCceeehhHhhhhh---hHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHH
Confidence 45566655555666655566766666666533 222222222333444443 56543 357999999999
Q ss_pred HHHHHHHHHHHhhh
Q 037124 92 TMIVVLYSKVKKRF 105 (110)
Q Consensus 92 l~G~~~Ys~~k~~~ 105 (110)
++|...|...|..+
T Consensus 126 ~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 126 LVSGIIFSFIKSEE 139 (254)
T ss_pred HHHHHheeeecCCC
Confidence 99999999987765
No 62
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=77.92 E-value=14 Score=27.63 Aligned_cols=59 Identities=22% Similarity=0.169 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHH
Q 037124 28 VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAV 90 (110)
Q Consensus 28 ~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i 90 (110)
|..++..+..|.. .=.++++.+.+.-+.+..+--+++.++|+.+||.++|..-.+|..+
T Consensus 185 ~~~i~~~a~gGll----va~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 185 WIVIFLQAIGGLL----VAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHHHHHHHhhHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 4444555555543 4457899999999999999999999999999999999988888653
No 63
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=74.82 E-value=4.6 Score=25.83 Aligned_cols=30 Identities=13% Similarity=-0.105 Sum_probs=24.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhhc
Q 037124 79 PVTVMGMTEFAVTTMIVVLYSKVKKRFKIS 108 (110)
Q Consensus 79 ~~t~~~~~G~~i~l~G~~~Ys~~k~~~k~~ 108 (110)
..+|.+++|+.++++|..+|...+.+.+.+
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~Pev~ 33 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRPEVS 33 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCcchh
Confidence 467899999999999999998777666543
No 64
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=73.17 E-value=2.8 Score=28.17 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=34.1
Q ss_pred HHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHH
Q 037124 56 TLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVV 96 (110)
Q Consensus 56 T~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~ 96 (110)
+.-+++.+--+.+.+.++++.+|..+...++|+.+.+.|+.
T Consensus 70 avPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~ 110 (113)
T PF10639_consen 70 AVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVA 110 (113)
T ss_pred eehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCee
Confidence 34456777888999999888888889999999999999975
No 65
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=67.06 E-value=58 Score=25.35 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=49.5
Q ss_pred HHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHH
Q 037124 45 KFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSK 100 (110)
Q Consensus 45 ~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~ 100 (110)
+....++-++=++++.=.+.-..-.+.|+++.||..|+.|+.|+...+.+..--+.
T Consensus 227 EmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 227 EMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred HHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence 55678899999999999999999999999999999999999999999888764443
No 66
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=63.24 E-value=7.5 Score=20.49 Aligned_cols=21 Identities=10% Similarity=0.028 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhc
Q 037124 88 FAVTTMIVVLYSKVKKRFKIS 108 (110)
Q Consensus 88 ~~i~l~G~~~Ys~~k~~~k~~ 108 (110)
+.+++.|..+|.+-|++++-.
T Consensus 6 i~L~l~ga~f~~fKKyQ~~vn 26 (33)
T PF10855_consen 6 IILILGGAAFYGFKKYQNHVN 26 (33)
T ss_pred ehhhhhhHHHHHHHHHHHHHh
Confidence 457889999999999987643
No 67
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=61.16 E-value=19 Score=28.53 Aligned_cols=78 Identities=10% Similarity=-0.002 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHhhh
Q 037124 28 VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKKRF 105 (110)
Q Consensus 28 ~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~~~ 105 (110)
++..-..++..-.=..+.|-.+++.|=-|..++-..|-+.+.+.+.++++.+.++...+-..+.-.|...++..+..+
T Consensus 83 l~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 83 LYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred hhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 444444444444555677888999999999999999999999999999999999999888888888888887765544
No 68
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=61.11 E-value=29 Score=27.21 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=46.5
Q ss_pred HhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHHh
Q 037124 47 FVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVKK 103 (110)
Q Consensus 47 ~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k~ 103 (110)
.+++.+|+..+|+.=..-|.-.+++ -.||-++++.-.+..+....|.+.|+...+
T Consensus 248 il~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~ 302 (336)
T KOG2766|consen 248 ILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREK 302 (336)
T ss_pred HheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecccc
Confidence 4788899999998888888766666 788999999999999999999999976433
No 69
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=60.12 E-value=21 Score=19.88 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=19.9
Q ss_pred hccCccchhhHHHHHHHH-HHHHHHHHHHhh
Q 037124 75 IFKNPVTVMGMTEFAVTT-MIVVLYSKVKKR 104 (110)
Q Consensus 75 ~fg~~~t~~~~~G~~i~l-~G~~~Ys~~k~~ 104 (110)
+|++++.....+.+..++ .|.+++.+..+|
T Consensus 6 LF~s~vGL~Sl~vI~~~igm~~~~~~~F~~k 36 (42)
T PF11346_consen 6 LFGSDVGLMSLIVIVFTIGMGVFFIRYFIRK 36 (42)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488998888887777665 344555555444
No 70
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=59.34 E-value=29 Score=26.83 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHH
Q 037124 35 ATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVL 97 (110)
Q Consensus 35 g~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~ 97 (110)
-.++-..|+.++- ...+--.+=.|.+--+...+++..+.||+++...+.|.++++.|...
T Consensus 60 ~~~g~~~~~~Al~---~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~l 119 (300)
T PF05653_consen 60 MVLGEILNFVALG---FAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVL 119 (300)
T ss_pred HhcchHHHHHHHH---hhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhhee
Confidence 3444455554443 22222334446666778889999999999999999999999999865
No 71
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.46 E-value=55 Score=23.09 Aligned_cols=73 Identities=8% Similarity=0.072 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHH-h-Hhhcc---CccchhhHHHHHHHHHHHHHHHH
Q 037124 28 VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVV-L-VLIFK---NPVTVMGMTEFAVTTMIVVLYSK 100 (110)
Q Consensus 28 ~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~-s-~~~fg---~~~t~~~~~G~~i~l~G~~~Ys~ 100 (110)
+++....|+++-.+-.++-....+-.+.+.......-+.+.-.+ - +=+|| .+++...+.|.++.++|.+.-+.
T Consensus 69 pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 69 PWWAWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred chHHHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 66777888999999999999999888888877766655533221 1 11334 34789999999999999665443
No 72
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=54.30 E-value=57 Score=25.01 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhh
Q 037124 28 VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGN 62 (110)
Q Consensus 28 ~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~ 62 (110)
-..++.+-++||+.|+-.|++.-. +|.+.+|.
T Consensus 160 d~~F~~af~vAflFnwIGFlltyc---l~tT~agR 191 (262)
T KOG4812|consen 160 DGIFMWAFIVAFLFNWIGFLLTYC---LTTTHAGR 191 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH---HHhhHhhh
Confidence 345677888999999999987654 55666654
No 73
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=51.97 E-value=1.1e+02 Score=23.60 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHH---HHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhh----HHHHHHHHHHHHHHHH
Q 037124 28 VYLLLGNATIAYL---VILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMG----MTEFAVTTMIVVLYSK 100 (110)
Q Consensus 28 ~~~l~~sg~~af~---~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~----~~G~~i~l~G~~~Ys~ 100 (110)
+..-+++|++=-. ..+.+|-.++. +.|+=+.--.-=+...+.++++|||.-+..+ ..++.+.+.|..+=++
T Consensus 45 ~~~~~lsG~~W~iGq~~qf~s~~~~GV--S~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 45 FIVAFLSGAFWAIGQIGQFKSFKKIGV--SKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc--eeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 4444555543223 33344444433 2222233333446678899999999766443 4577788889988777
Q ss_pred HHhhhh
Q 037124 101 VKKRFK 106 (110)
Q Consensus 101 ~k~~~k 106 (110)
.+++++
T Consensus 123 ~~~~~~ 128 (269)
T PF06800_consen 123 QDKKSD 128 (269)
T ss_pred cccccc
Confidence 666544
No 74
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=45.39 E-value=13 Score=28.05 Aligned_cols=59 Identities=7% Similarity=0.064 Sum_probs=39.8
Q ss_pred HHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHH
Q 037124 42 ILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSK 100 (110)
Q Consensus 42 n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~ 100 (110)
|+--...+++.||-.-+-.-.-+...+-+++++..||++....++...+++.|+..-+|
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay 125 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAY 125 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEe
Confidence 34444556666666666666666777777888888888777777777777777655443
No 75
>PF14981 FAM165: FAM165 family
Probab=45.23 E-value=27 Score=19.96 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 037124 87 EFAVTTMIVVLYSKVKKRFKI 107 (110)
Q Consensus 87 G~~i~l~G~~~Ys~~k~~~k~ 107 (110)
=.+++++|+-+|+..|..+|+
T Consensus 19 ilClaFAgvK~yQ~krlEak~ 39 (51)
T PF14981_consen 19 ILCLAFAGVKMYQRKRLEAKL 39 (51)
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 357889999999987665443
No 76
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=44.27 E-value=30 Score=21.27 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 037124 84 GMTEFAVTTMIVVLYSKVKKR 104 (110)
Q Consensus 84 ~~~G~~i~l~G~~~Ys~~k~~ 104 (110)
-.+|+++++.|..+|....++
T Consensus 6 iLi~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 467899999999999976543
No 77
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=43.18 E-value=1.1e+02 Score=23.48 Aligned_cols=65 Identities=11% Similarity=0.047 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhh----HHHHHHHHHHHH
Q 037124 32 LGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMG----MTEFAVTTMIVV 96 (110)
Q Consensus 32 ~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~----~~G~~i~l~G~~ 96 (110)
.++|++-=.-|++-+...++.+.-+-=..+.+--++..+.|++++||+=|.++ .+|..+.+.|..
T Consensus 199 il~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 199 ILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred hHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 45555555678888888887777777777888889999999999999988765 456666666654
No 78
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=40.07 E-value=25 Score=19.60 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 037124 88 FAVTTMIVVLYSKVKKR 104 (110)
Q Consensus 88 ~~i~l~G~~~Ys~~k~~ 104 (110)
..+.+.|+.+|.+.+++
T Consensus 18 ~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 18 FFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHcccc
Confidence 35677888998887664
No 79
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=38.40 E-value=72 Score=25.39 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=36.6
Q ss_pred hccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHH
Q 037124 50 KHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVL 97 (110)
Q Consensus 50 ~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~ 97 (110)
..|||-.++..-=.--+.+-++|..+.+..+++.+|.|+.....|...
T Consensus 108 ~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlvi 155 (372)
T KOG3912|consen 108 NLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVI 155 (372)
T ss_pred HHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhhe
Confidence 346777776654444455667778889999999999999999999864
No 80
>PHA03049 IMV membrane protein; Provisional
Probab=37.56 E-value=43 Score=20.56 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 037124 83 MGMTEFAVTTMIVVLYSKVKKR 104 (110)
Q Consensus 83 ~~~~G~~i~l~G~~~Ys~~k~~ 104 (110)
.-.+++++++.|...|...+++
T Consensus 5 ~~l~iICVaIi~lIvYgiYnkk 26 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3467899999999999976554
No 81
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=36.51 E-value=39 Score=22.62 Aligned_cols=28 Identities=18% Similarity=0.071 Sum_probs=22.8
Q ss_pred HHHHhHhhccCccchhhHHHHHHHHHHH
Q 037124 68 AAVVLVLIFKNPVTVMGMTEFAVTTMIV 95 (110)
Q Consensus 68 ~i~~s~~~fg~~~t~~~~~G~~i~l~G~ 95 (110)
-..+|+++.||++++....|.+..++++
T Consensus 76 F~~Fsv~~l~E~l~~n~l~af~~i~~av 103 (108)
T PF04342_consen 76 FAPFSVFYLGEPLKWNYLWAFLCILGAV 103 (108)
T ss_pred eHHHHHHHhCCCccHHHHHHHHHHHHhh
Confidence 3457888999999999999988776664
No 82
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=33.36 E-value=2.8 Score=32.68 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=46.7
Q ss_pred HHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHH
Q 037124 42 ILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVL 97 (110)
Q Consensus 42 n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~ 97 (110)
|+.....-++||-.+-+..-.--...+.+++|++.+.+-..+++.|..+|++|+.+
T Consensus 92 Ny~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~Gvvm 147 (336)
T KOG2766|consen 92 NYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVM 147 (336)
T ss_pred cEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEE
Confidence 33344456778888888888888899999999999999999999999999998743
No 83
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=33.10 E-value=45 Score=18.85 Aligned_cols=19 Identities=26% Similarity=0.203 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 037124 88 FAVTTMIVVLYSKVKKRFK 106 (110)
Q Consensus 88 ~~i~l~G~~~Ys~~k~~~k 106 (110)
..+.++|+.+|.+.+.+.|
T Consensus 19 ~~~~Figiv~wa~~p~~k~ 37 (48)
T cd01324 19 LALFFLGVVVWAFRPGRKK 37 (48)
T ss_pred HHHHHHHHHHHHhCCCcch
Confidence 4688899999998866543
No 84
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=30.63 E-value=56 Score=21.98 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh
Q 037124 84 GMTEFAVTTMIVVLYSKVKKRFK 106 (110)
Q Consensus 84 ~~~G~~i~l~G~~~Ys~~k~~~k 106 (110)
...|+.+++.....|++.+.|.+
T Consensus 106 T~~GL~vai~~~~~~~~l~~~~~ 128 (139)
T PF01618_consen 106 TAYGLVVAIPALPFYNYLKRRVE 128 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999888754
No 85
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=29.22 E-value=2.5e+02 Score=23.58 Aligned_cols=65 Identities=8% Similarity=0.073 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHH
Q 037124 28 VYLLLGNATIAYLVILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTM 93 (110)
Q Consensus 28 ~~~l~~sg~~af~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~ 93 (110)
.-.-+.+|++|+++-..-..+-.+.--+--+++=.+ +.+.++...-++|-.+|.-.+.|+.++++
T Consensus 342 i~~gi~Agl~g~~~V~vfm~~~Yr~~Gvia~ial~~-n~~lil~vls~lgatLtLpgIAGiILtIG 406 (506)
T COG0342 342 IKAGLIAGLIGLALVAVFMLLYYRLAGVIAAIALGL-NGVLILAVLSLLGATLTLPGIAGIILTIG 406 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHhcccccchhhhHHHHhhh
Confidence 334456666776555444444444333333333333 66677777777788999999999988873
No 86
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=25.52 E-value=23 Score=27.53 Aligned_cols=24 Identities=8% Similarity=0.163 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhh
Q 037124 81 TVMGMTEFAVTTMIVVLYSKVKKR 104 (110)
Q Consensus 81 t~~~~~G~~i~l~G~~~Ys~~k~~ 104 (110)
..-.++.+.++++|..||.+.++.
T Consensus 231 LVPSiILVLLaVGGLLfYr~rrRs 254 (285)
T PF05337_consen 231 LVPSIILVLLAVGGLLFYRRRRRS 254 (285)
T ss_dssp ------------------------
T ss_pred cccchhhhhhhccceeeecccccc
Confidence 345678889999999999987654
No 87
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.17 E-value=1.7e+02 Score=20.40 Aligned_cols=31 Identities=10% Similarity=0.160 Sum_probs=22.5
Q ss_pred HHHHHHhHhhccCccchhhHHHHHHHHHHHH
Q 037124 66 ALAAVVLVLIFKNPVTVMGMTEFAVTTMIVV 96 (110)
Q Consensus 66 v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~ 96 (110)
.+.+..|+.+=+...+..+.+|..+++.|+.
T Consensus 77 ~vLil~g~~la~t~~~~i~~ig~~l~li~il 107 (143)
T COG3296 77 FVLILAGVFLAATDISFIIIIGFFLTLIGIL 107 (143)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 4555666666677777888888888877776
No 88
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=25.03 E-value=1e+02 Score=23.93 Aligned_cols=69 Identities=12% Similarity=0.029 Sum_probs=49.8
Q ss_pred HHHHHHHHH-HHHHHHhHhccchhHHHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHH
Q 037124 33 GNATIAYLV-ILTKFFVKKHTCTLTLQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKV 101 (110)
Q Consensus 33 ~sg~~af~~-n~~~f~~i~~tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~ 101 (110)
..|-..+++ -.++....+..-==|.-+.-..|-+.+.++|+.+-+..-++....-......|++++-|-
T Consensus 89 aAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK 158 (337)
T KOG1580|consen 89 AACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYK 158 (337)
T ss_pred HHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcc
Confidence 333333333 334445555444445566667899999999999999999999999999999999887664
No 89
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=24.98 E-value=3e+02 Score=20.56 Aligned_cols=18 Identities=11% Similarity=0.030 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 037124 83 MGMTEFAVTTMIVVLYSK 100 (110)
Q Consensus 83 ~~~~G~~i~l~G~~~Ys~ 100 (110)
.+..|...++.+.+.|..
T Consensus 145 ~~~~G~ll~l~aa~~~a~ 162 (293)
T PRK10532 145 VDLTGAALALGAGACWAI 162 (293)
T ss_pred CChHHHHHHHHHHHHHHH
Confidence 345677777766665554
No 90
>PF15055 DUF4536: Domain of unknown function (DUF4536)
Probab=24.54 E-value=48 Score=18.87 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 037124 85 MTEFAVTTMIVVLYSKVKKRFK 106 (110)
Q Consensus 85 ~~G~~i~l~G~~~Ys~~k~~~k 106 (110)
+-|..+.-+|.+.|...|++.|
T Consensus 8 vSG~GLig~G~Yv~~~ark~~k 29 (47)
T PF15055_consen 8 VSGGGLIGAGAYVYAQARKRMK 29 (47)
T ss_pred ecccchHHHHHHHHHHHhhccc
Confidence 3456666778888888888765
No 91
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=24.11 E-value=47 Score=21.83 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=15.5
Q ss_pred cCccchhhHHHHHHHHHHHHHHHH
Q 037124 77 KNPVTVMGMTEFAVTTMIVVLYSK 100 (110)
Q Consensus 77 g~~~t~~~~~G~~i~l~G~~~Ys~ 100 (110)
.|.+|...+.|..+++-|-.+||.
T Consensus 58 kN~is~a~i~alViaIY~YTfYSi 81 (108)
T KOG4782|consen 58 KNHISFAGIGALVIAIYGYTFYSI 81 (108)
T ss_pred hhhhhhHHHHHHHHHhhhheeeeh
Confidence 466777666666666666666665
No 92
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=24.11 E-value=1.8e+02 Score=22.18 Aligned_cols=53 Identities=9% Similarity=0.142 Sum_probs=39.7
Q ss_pred cchhHHHHhhhhhhHHHHHHhHhhccCccch-hhHHHHHHHHHHHHHHHHHHhh
Q 037124 52 TCTLTLQVLGNAKAALAAVVLVLIFKNPVTV-MGMTEFAVTTMIVVLYSKVKKR 104 (110)
Q Consensus 52 tS~lT~sV~g~~K~v~~i~~s~~~fg~~~t~-~~~~G~~i~l~G~~~Ys~~k~~ 104 (110)
-.++++-++...=+...+...+..||-+++. +...|..+++......++..++
T Consensus 84 ~~~~aFl~a~p~~n~~~~~~~~~~lg~~~~~~r~~~~~~~~~~~g~l~~~~~~~ 137 (307)
T PF03773_consen 84 GAAMAFLLASPLLNPIVLLLTWAALGWKFTLIRIVLGLILAILVGLLFSRLFKR 137 (307)
T ss_pred chhHHHHHhhHHhhHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3567888889999999999999999988876 5566777776666555554443
No 93
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=23.92 E-value=79 Score=15.74 Aligned_cols=10 Identities=0% Similarity=0.169 Sum_probs=5.5
Q ss_pred chhhHHHHHH
Q 037124 81 TVMGMTEFAV 90 (110)
Q Consensus 81 t~~~~~G~~i 90 (110)
+...++|.++
T Consensus 11 ~~~~~~G~~l 20 (34)
T TIGR01167 11 SLLLLLGLLL 20 (34)
T ss_pred HHHHHHHHHH
Confidence 4455667633
No 94
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=23.53 E-value=1.7e+02 Score=20.86 Aligned_cols=43 Identities=19% Similarity=0.093 Sum_probs=28.4
Q ss_pred hhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHH
Q 037124 60 LGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVK 102 (110)
Q Consensus 60 ~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k 102 (110)
.-+-|-+.+.+.++..++.+.+..++++.++...|...-+..+
T Consensus 10 ~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~ 52 (222)
T TIGR00803 10 FKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGD 52 (222)
T ss_pred HHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhH
Confidence 3344556666667777777777777777777777776544433
No 95
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=22.79 E-value=89 Score=22.80 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 037124 84 GMTEFAVTTMIVVLYSKVKKRF 105 (110)
Q Consensus 84 ~~~G~~i~l~G~~~Ys~~k~~~ 105 (110)
...|..+++-+...|++.+.|.
T Consensus 170 TA~GL~VAIPAli~yn~f~~ri 191 (211)
T TIGR02797 170 TAIGLVAAIPAVVIYNVFARSI 191 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999998774
No 96
>TIGR02805 exbB2 tonB-system energizer ExbB, group 2. Members of this protein family appear to be the ExbB protein of an ExbBD proton-transporting membrane complex that, by means of TonB, energizes transport by TonB-dependent receptors. Note that this family represents one of at least two distinct groups TolQ homologs designated ExbB - see also TIGR02797. Each group associates with a distinct group of ExbD proteins, and a single species may have two ExbB/ExbD/TonB systems.
Probab=22.20 E-value=1.4e+02 Score=20.85 Aligned_cols=23 Identities=13% Similarity=0.262 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh
Q 037124 84 GMTEFAVTTMIVVLYSKVKKRFK 106 (110)
Q Consensus 84 ~~~G~~i~l~G~~~Ys~~k~~~k 106 (110)
...|..+++-+...|++.++|.+
T Consensus 106 Ta~GL~VAIpali~yn~l~~rv~ 128 (138)
T TIGR02805 106 TALGLLVAIPSLVFYNALLRKVE 128 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999877643
No 97
>COG0818 DgkA Diacylglycerol kinase [Cell envelope biogenesis, outer membrane]
Probab=21.40 E-value=2.8e+02 Score=18.93 Aligned_cols=61 Identities=20% Similarity=0.085 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhHHHH-HHHHHHHHHHH---HHHHHHHHHhHhccchhHHHHhhhhhhHHHH
Q 037124 9 LMAASIFLPFTLYIEGIFI-VYLLLGNATIA---YLVILTKFFVKKHTCTLTLQVLGNAKAALAA 69 (110)
Q Consensus 9 p~~~~~l~~~~~~~E~~~~-~~~l~~sg~~a---f~~n~~~f~~i~~tS~lT~sV~g~~K~v~~i 69 (110)
-+.++...|.+++.+.+.. +..+..+.++- =++|-+.=-+++++|+=-+-.++..||+..-
T Consensus 36 ~~~~~~~i~~~~~l~~~~~e~lll~~si~lvl~vEllNTAIEa~VD~~s~e~helak~AKD~as~ 100 (123)
T COG0818 36 LLAALVALVLAFFLGVSAIEWLLLILSIFLVLIVELLNTAIEAVVDLISPEYHELAKRAKDMGSA 100 (123)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHhH
Confidence 3455667777777776554 33344444333 3578888889999999889999999998643
No 98
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=20.62 E-value=1e+02 Score=22.86 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh
Q 037124 84 GMTEFAVTTMIVVLYSKVKKRFK 106 (110)
Q Consensus 84 ~~~G~~i~l~G~~~Ys~~k~~~k 106 (110)
...|..+++-..+.|++...|-+
T Consensus 175 Ta~GL~vAIPAli~yN~f~~ri~ 197 (227)
T PRK10801 175 TAIGLFAAIPAVMAYNRLNQRVN 197 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999877743
No 99
>PRK11387 S-methylmethionine transporter; Provisional
Probab=20.37 E-value=3.5e+02 Score=21.71 Aligned_cols=23 Identities=4% Similarity=-0.047 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh
Q 037124 84 GMTEFAVTTMIVVLYSKVKKRFK 106 (110)
Q Consensus 84 ~~~G~~i~l~G~~~Ys~~k~~~k 106 (110)
.+.|..+.+.|...|...|+++|
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~ 460 (471)
T PRK11387 438 LWCGIPFVALCYGAYYLTQRLKR 460 (471)
T ss_pred HHHHHHHHHHHHHHHHHhccccc
Confidence 46788888899999887665533
Done!