Query 037124
Match_columns 110
No_of_seqs 127 out of 1030
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 14:57:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037124.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037124hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 97.2 0.0032 1.1E-07 40.7 8.3 51 51-101 52-104 (110)
2 2i68_A Protein EMRE; transmemb 97.1 0.0013 4.5E-08 44.5 6.6 46 57-102 60-105 (137)
3 2h3o_A MERF; membrane protein, 30.9 28 0.00097 20.1 1.9 16 92-107 43-58 (61)
4 3kcu_A Probable formate transp 15.2 74 0.0025 23.4 1.9 25 79-103 257-281 (285)
5 4fc4_A Nitrite transporter NIR 13.1 50 0.0017 24.0 0.4 26 79-104 228-253 (261)
6 3l1l_A Arginine/agmatine antip 12.4 4.2E+02 0.014 19.2 6.7 22 84-105 410-431 (445)
7 3few_X Colicin S4; cell lysis, 10.6 4.1E+02 0.014 21.1 4.8 22 75-96 459-481 (505)
8 2k1e_A Water soluble analogue 9.2 3.4E+02 0.012 16.0 3.6 35 76-110 57-103 (103)
9 1rh5_B Preprotein translocase 8.9 2.5E+02 0.0084 16.5 2.4 15 84-98 39-53 (74)
10 3rkl_A STIV-A81; 4-helix bundl 8.7 1.7E+02 0.0058 17.2 1.6 14 96-109 35-48 (87)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.16 E-value=0.0032 Score=40.75 Aligned_cols=51 Identities=6% Similarity=0.072 Sum_probs=41.2
Q ss_pred ccchhHH--HHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHH
Q 037124 51 HTCTLTL--QVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKV 101 (110)
Q Consensus 51 ~tS~lT~--sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~ 101 (110)
+.-|++. .+-..+--+.+.+.|+++|||++|+.+++|+.+.+.|+..-+..
T Consensus 52 ~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 52 AYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3344443 34356677889999999999999999999999999999987654
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.14 E-value=0.0013 Score=44.50 Aligned_cols=46 Identities=7% Similarity=0.104 Sum_probs=33.4
Q ss_pred HHHhhhhhhHHHHHHhHhhccCccchhhHHHHHHHHHHHHHHHHHH
Q 037124 57 LQVLGNAKAALAAVVLVLIFKNPVTVMGMTEFAVTTMIVVLYSKVK 102 (110)
Q Consensus 57 ~sV~g~~K~v~~i~~s~~~fg~~~t~~~~~G~~i~l~G~~~Ys~~k 102 (110)
+.+...+--+.+.++|+++|||++|+.+++|+++.+.|+..-+..+
T Consensus 60 y~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 60 YAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3443677888999999999999999999999999999999987654
No 3
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=30.91 E-value=28 Score=20.08 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhhhh
Q 037124 92 TMIVVLYSKVKKRFKI 107 (110)
Q Consensus 92 l~G~~~Ys~~k~~~k~ 107 (110)
+.|..+|...|+|+++
T Consensus 43 figl~~Y~~~r~~~~~ 58 (61)
T 2h3o_A 43 FIGLTIYAIQRKRQAD 58 (61)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhhhhc
Confidence 3499999998887543
No 4
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=15.16 E-value=74 Score=23.42 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=18.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHh
Q 037124 79 PVTVMGMTEFAVTTMIVVLYSKVKK 103 (110)
Q Consensus 79 ~~t~~~~~G~~i~l~G~~~Ys~~k~ 103 (110)
|++.-|++|=.+-+....+|.+.|.
T Consensus 257 pvtlGNiIGG~~fvgl~y~~~~~~~ 281 (285)
T 3kcu_A 257 PVTIGNIIGGGLLVGLTYWVIYLRE 281 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 5677789998887777777777554
No 5
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=13.06 E-value=50 Score=24.03 Aligned_cols=26 Identities=19% Similarity=-0.017 Sum_probs=15.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhh
Q 037124 79 PVTVMGMTEFAVTTMIVVLYSKVKKR 104 (110)
Q Consensus 79 ~~t~~~~~G~~i~l~G~~~Ys~~k~~ 104 (110)
|++.-|++|=.+-+....+|.+.|++
T Consensus 228 pvtlGNiiGG~~fvgl~y~~~~~~~~ 253 (261)
T 4fc4_A 228 WVTLGNTLSGVVFMGLGYWYATPKSE 253 (261)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 45667788876666666666664443
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=12.44 E-value=4.2e+02 Score=19.25 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 037124 84 GMTEFAVTTMIVVLYSKVKKRF 105 (110)
Q Consensus 84 ~~~G~~i~l~G~~~Ys~~k~~~ 105 (110)
-..|..+...|..+|-+.|+|.
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 4568888899999998876653
No 7
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=10.58 E-value=4.1e+02 Score=21.11 Aligned_cols=22 Identities=9% Similarity=0.235 Sum_probs=13.9
Q ss_pred hccCccchhhHHHH-HHHHHHHH
Q 037124 75 IFKNPVTVMGMTEF-AVTTMIVV 96 (110)
Q Consensus 75 ~fg~~~t~~~~~G~-~i~l~G~~ 96 (110)
..|-|.|...++|+ .++..|.+
T Consensus 459 ilG~P~taIGIaGiILmAvVgAl 481 (505)
T 3few_X 459 SLGAPAIAVGIVGILLAAVVGAL 481 (505)
T ss_dssp HCCSCSSHHHHHHHHHHHHHHHH
T ss_pred HhcCchhHHHHHHHHHHHHHHHH
Confidence 46778888888884 33444443
No 8
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=9.24 E-value=3.4e+02 Score=16.05 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=0.0
Q ss_pred ccC--ccchh-hHHHHHHHHHHHHHHHHH---------HhhhhhccC
Q 037124 76 FKN--PVTVM-GMTEFAVTTMIVVLYSKV---------KKRFKISTH 110 (110)
Q Consensus 76 fg~--~~t~~-~~~G~~i~l~G~~~Ys~~---------k~~~k~~~~ 110 (110)
||| |.|+. +.+.....+.|....... +.++|..+|
T Consensus 57 yGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~~ 103 (103)
T 2k1e_A 57 YGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREEERRGH 103 (103)
T ss_dssp CCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHHHTTTC
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
No 9
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=8.86 E-value=2.5e+02 Score=16.49 Aligned_cols=15 Identities=13% Similarity=0.372 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHH
Q 037124 84 GMTEFAVTTMIVVLY 98 (110)
Q Consensus 84 ~~~G~~i~l~G~~~Y 98 (110)
.+.|+++.++|..-|
T Consensus 39 k~~~iG~~imG~IGf 53 (74)
T 1rh5_B 39 KVTALGISLLGIIGY 53 (74)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
No 10
>3rkl_A STIV-A81; 4-helix bundle, hyperthermophilic viral protein, viral prote; 1.70A {Sulfolobus turreted icosahedral virus}
Probab=8.68 E-value=1.7e+02 Score=17.20 Aligned_cols=14 Identities=29% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhcc
Q 037124 96 VLYSKVKKRFKIST 109 (110)
Q Consensus 96 ~~Ys~~k~~~k~~~ 109 (110)
..|+.+|.-+|++|
T Consensus 35 ivyqlaklieklsq 48 (87)
T 3rkl_A 35 IVYQLAKLIEKLSQ 48 (87)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH
Done!