Query 037124
Match_columns 110
No_of_seqs 127 out of 1030
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 14:57:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037124.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037124hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r3jc_ f.14.1.1 (C:) Potassiu 35.6 26 0.0019 19.9 4.1 36 75-110 56-103 (103)
2 d1n1ea1 a.100.1.6 (A:198-357) 25.5 25 0.0018 21.8 2.9 22 53-74 2-23 (160)
3 d1cola_ f.1.1.1 (A:) Colicin A 17.7 1E+02 0.0074 20.1 4.7 22 76-98 161-182 (197)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 17.0 49 0.0036 14.5 2.9 17 85-101 2-18 (27)
5 d1txga1 a.100.1.6 (A:181-335) 15.3 51 0.0037 20.2 2.6 21 55-75 3-23 (155)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 15.2 69 0.005 18.0 3.1 22 85-106 36-57 (100)
7 d1kqfb2 f.23.22.1 (B:246-290) 12.9 65 0.0047 16.1 2.1 26 72-97 4-29 (45)
8 d2axtj1 f.23.32.1 (J:7-40) Pho 11.4 67 0.0049 15.0 1.7 11 89-99 15-25 (34)
9 d3ehbb2 f.17.2.1 (B:1-107) Bac 9.6 1E+02 0.0075 17.4 2.6 22 85-106 42-63 (107)
10 d1l2wi_ d.198.1.1 (I:) YopE ch 6.4 63 0.0046 16.4 0.3 19 48-66 38-56 (57)
No 1
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=35.60 E-value=26 Score=19.90 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=21.8
Q ss_pred hccCc--cch-hhHHHHHHHHHHHHHHHH---------HHhhhhhccC
Q 037124 75 IFKNP--VTV-MGMTEFAVTTMIVVLYSK---------VKKRFKISTH 110 (110)
Q Consensus 75 ~fg~~--~t~-~~~~G~~i~l~G~~~Ys~---------~k~~~k~~~~ 110 (110)
=|||- .|+ -+++.....+.|...+.. .++++|.+.|
T Consensus 56 GYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~~rr~h 103 (103)
T d1r3jc_ 56 GYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQERRGH 103 (103)
T ss_dssp CCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35664 333 466777777777766653 3455666666
No 2
>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Probab=25.54 E-value=25 Score=21.77 Aligned_cols=22 Identities=27% Similarity=0.074 Sum_probs=18.2
Q ss_pred chhHHHHhhhhhhHHHHHHhHh
Q 037124 53 CTLTLQVLGNAKAALAAVVLVL 74 (110)
Q Consensus 53 S~lT~sV~g~~K~v~~i~~s~~ 74 (110)
-....-++|.+|++..+..|+.
T Consensus 2 D~~GvE~~galKNi~Aia~Gi~ 23 (160)
T d1n1ea1 2 DTVGCEVASAVKNVLAIGSGVA 23 (160)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999998876
No 3
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=17.74 E-value=1e+02 Score=20.07 Aligned_cols=22 Identities=14% Similarity=0.301 Sum_probs=13.9
Q ss_pred ccCccchhhHHHHHHHHHHHHHH
Q 037124 76 FKNPVTVMGMTEFAVTTMIVVLY 98 (110)
Q Consensus 76 fg~~~t~~~~~G~~i~l~G~~~Y 98 (110)
.|-|.|+..++|+ +.+..+.-|
T Consensus 161 ~g~~~~~iGI~g~-li~~~v~al 182 (197)
T d1cola_ 161 LGVPAIAVGIAGI-LLAAVVGAL 182 (197)
T ss_dssp CCSCHHHHHHHHH-HHHHHHHHH
T ss_pred ccccccHHHHHHH-HHHHHHHHH
Confidence 3677888888888 544444433
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.98 E-value=49 Score=14.49 Aligned_cols=17 Identities=12% Similarity=0.217 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037124 85 MTEFAVTTMIVVLYSKV 101 (110)
Q Consensus 85 ~~G~~i~l~G~~~Ys~~ 101 (110)
+.|..++..|..+|...
T Consensus 2 vlgli~~tl~glf~aay 18 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAY 18 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHH
Confidence 35666666666565543
No 5
>d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=15.31 E-value=51 Score=20.17 Aligned_cols=21 Identities=5% Similarity=0.096 Sum_probs=17.5
Q ss_pred hHHHHhhhhhhHHHHHHhHhh
Q 037124 55 LTLQVLGNAKAALAAVVLVLI 75 (110)
Q Consensus 55 lT~sV~g~~K~v~~i~~s~~~ 75 (110)
+...++|.+|++..+..|+.-
T Consensus 3 iGvEi~galKNi~Aia~Gi~~ 23 (155)
T d1txga1 3 IGTEITSALKNVYSIAIAWIR 23 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999863
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=15.24 E-value=69 Score=17.97 Aligned_cols=22 Identities=14% Similarity=0.313 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 037124 85 MTEFAVTTMIVVLYSKVKKRFK 106 (110)
Q Consensus 85 ~~G~~i~l~G~~~Ys~~k~~~k 106 (110)
..++.+...|...|...|+|.|
T Consensus 36 ~~~I~~~V~~~l~~~~~~~r~~ 57 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWRFHEK 57 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHHHHhhhhhcc
Confidence 3455566778888887777755
No 7
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=12.93 E-value=65 Score=16.05 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=20.6
Q ss_pred hHhhccCccchhhHHHHHHHHHHHHH
Q 037124 72 LVLIFKNPVTVMGMTEFAVTTMIVVL 97 (110)
Q Consensus 72 s~~~fg~~~t~~~~~G~~i~l~G~~~ 97 (110)
++-++++..-|...+|+..+.++.++
T Consensus 4 ~V~lWKgv~Kpl~~~~~~~~~~~~~f 29 (45)
T d1kqfb2 4 SVSLWKGALKPLAAAGFIATFAGLIF 29 (45)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 45567788889999999888887765
No 8
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=11.37 E-value=67 Score=14.96 Aligned_cols=11 Identities=9% Similarity=0.359 Sum_probs=7.8
Q ss_pred HHHHHHHHHHH
Q 037124 89 AVTTMIVVLYS 99 (110)
Q Consensus 89 ~i~l~G~~~Ys 99 (110)
.+.+.|.++|.
T Consensus 15 vi~~vG~FfYG 25 (34)
T d2axtj1 15 VIVIVGLFFYG 25 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred hHhheeeeeee
Confidence 35678888875
No 9
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=9.62 E-value=1e+02 Score=17.45 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 037124 85 MTEFAVTTMIVVLYSKVKKRFK 106 (110)
Q Consensus 85 ~~G~~i~l~G~~~Ys~~k~~~k 106 (110)
..++.+...|...|...|+|.|
T Consensus 42 ~~~I~~~V~~~~~~~~~~~r~~ 63 (107)
T d3ehbb2 42 ITAVTIFVCLLLLICIVRFNRR 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHSBTT
T ss_pred HHHHHHHHHHHHHHHhhhhhcc
Confidence 3444555677787777766544
No 10
>d1l2wi_ d.198.1.1 (I:) YopE chaperone SycE {Yersinia pestis [TaxId: 632]}
Probab=6.36 E-value=63 Score=16.42 Aligned_cols=19 Identities=11% Similarity=0.228 Sum_probs=14.4
Q ss_pred hHhccchhHHHHhhhhhhH
Q 037124 48 VKKHTCTLTLQVLGNAKAA 66 (110)
Q Consensus 48 ~i~~tS~lT~sV~g~~K~v 66 (110)
++.+.|++.+++.|-+|+.
T Consensus 38 i~e~lss~ahs~i~fi~rm 56 (57)
T d1l2wi_ 38 IIERLSSVAHSVIGFIQRM 56 (57)
T ss_dssp CEEECSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4567788888888888764
Done!