BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037125
         (159 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DWN|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
           Fadl Mutant A77eS100R
 pdb|3DWN|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
           Fadl Mutant A77eS100R
          Length = 427

 Score = 28.5 bits (62), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 35  FNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKPWWIRAYYLCPTSW 87
           FN  G+ I + T G   +  LT +   M  +  G+    P W   Y L  TSW
Sbjct: 247 FNNYGLPIPTATGGATQSGYLTLNLPEMWEV-SGYNRVDPQWAIHYSLAYTSW 298


>pdb|3PGU|A Chain A, Phe3glu Mutant Of Ecfadl
          Length = 427

 Score = 28.1 bits (61), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 35  FNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKPWWIRAYYLCPTSW 87
           FN  G+ I + T G   +  LT +   M  +  G+    P W   Y L  TSW
Sbjct: 247 FNNYGLPIPTATGGATQSGYLTLNLPEMWEV-SGYNRVDPQWAIHYSLAYTSW 298


>pdb|1T16|A Chain A, Crystal Structure Of The Bacterial Fatty Acid Transporter
           Fadl From Escherichia Coli
 pdb|1T16|B Chain B, Crystal Structure Of The Bacterial Fatty Acid Transporter
           Fadl From Escherichia Coli
 pdb|1T1L|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
           Fadl
 pdb|1T1L|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
           Fadl
          Length = 427

 Score = 28.1 bits (61), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 35  FNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKPWWIRAYYLCPTSW 87
           FN  G+ I + T G   +  LT +   M  +  G+    P W   Y L  TSW
Sbjct: 247 FNNYGLPIPTATGGATQSGYLTLNLPEMWEV-SGYNRVDPQWAIHYSLAYTSW 298


>pdb|2R4O|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
           Fadl Mutant Delta Npa
 pdb|2R4O|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
           Fadl Mutant Delta Npa
          Length = 427

 Score = 28.1 bits (61), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 35  FNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKPWWIRAYYLCPTSW 87
           FN  G+ I + T G   +  LT +   M  +  G+    P W   Y L  TSW
Sbjct: 247 FNNYGLPIPTATGGATQSGYLTLNLPEMWEV-SGYNRVDPQWAIHYSLAYTSW 298


>pdb|2R4P|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
           Fadl Mutant G212e
 pdb|2R4P|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
           Fadl Mutant G212e
          Length = 427

 Score = 28.1 bits (61), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 35  FNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKPWWIRAYYLCPTSW 87
           FN  G+ I + T G   +  LT +   M  +  G+    P W   Y L  TSW
Sbjct: 247 FNNYGLPIPTATGGATQSGYLTLNLPEMWEV-SGYNRVDPQWAIHYSLAYTSW 298


>pdb|2R4L|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
           Fadl Mutant P34a
 pdb|2R4L|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
           Fadl Mutant P34a
 pdb|2R4L|C Chain C, Crystal Structure Of The Long-Chain Fatty Acid Transporter
           Fadl Mutant P34a
          Length = 427

 Score = 28.1 bits (61), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 35  FNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKPWWIRAYYLCPTSW 87
           FN  G+ I + T G   +  LT +   M  +  G+    P W   Y L  TSW
Sbjct: 247 FNNYGLPIPTATGGATQSGYLTLNLPEMWEV-SGYNRVDPQWAIHYSLAYTSW 298


>pdb|3PGS|A Chain A, Phe3gly Mutant Of Ecfadl
 pdb|3PGS|B Chain B, Phe3gly Mutant Of Ecfadl
          Length = 427

 Score = 28.1 bits (61), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 35  FNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKPWWIRAYYLCPTSW 87
           FN  G+ I + T G   +  LT +   M  +  G+    P W   Y L  TSW
Sbjct: 247 FNNYGLPIPTATGGATQSGYLTLNLPEMWEV-SGYNRVDPQWAIHYSLAYTSW 298


>pdb|3PF1|A Chain A, E. Coli Fadl Asp348ala Mutant
 pdb|3PF1|B Chain B, E. Coli Fadl Asp348ala Mutant
          Length = 424

 Score = 28.1 bits (61), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 35  FNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKPWWIRAYYLCPTSW 87
           FN  G+ I + T G   +  LT +   M  +  G+    P W   Y L  TSW
Sbjct: 247 FNNYGLPIPTATGGATQSGYLTLNLPEMWEV-SGYNRVDPQWAIHYSLAYTSW 298


>pdb|2R89|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
           Fadl Mutant Delta N3
 pdb|2R89|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
           Fadl Mutant Delta N3
          Length = 424

 Score = 28.1 bits (61), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 35  FNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKPWWIRAYYLCPTSW 87
           FN  G+ I + T G   +  LT +   M  +  G+    P W   Y L  TSW
Sbjct: 244 FNNYGLPIPTATGGATQSGYLTLNLPEMWEV-SGYNRVDPQWAIHYSLAYTSW 295


>pdb|2R88|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
           Fadl Mutant Delta S3 Kink
 pdb|2R88|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
           Fadl Mutant Delta S3 Kink
          Length = 426

 Score = 28.1 bits (61), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 35  FNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKPWWIRAYYLCPTSW 87
           FN  G+ I + T G   +  LT +   M  +  G+    P W   Y L  TSW
Sbjct: 246 FNNYGLPIPTATGGATQSGYLTLNLPEMWEV-SGYNRVDPQWAIHYSLAYTSW 297


>pdb|3PGR|A Chain A, Asp348arg Mutant Of Ecfadl
          Length = 427

 Score = 28.1 bits (61), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 35  FNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKPWWIRAYYLCPTSW 87
           FN  G+ I + T G   +  LT +   M  +  G+    P W   Y L  TSW
Sbjct: 247 FNNYGLPIPTATGGATQSGYLTLNLPEMWEV-SGYNRVDPQWAIHYSLAYTSW 298


>pdb|2R4N|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
           Fadl Mutant N33a
 pdb|2R4N|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
           Fadl Mutant N33a
          Length = 427

 Score = 28.1 bits (61), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 35  FNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKPWWIRAYYLCPTSW 87
           FN  G+ I + T G   +  LT +   M  +  G+    P W   Y L  TSW
Sbjct: 247 FNNYGLPIPTATGGATQSGYLTLNLPEMWEV-SGYNRVDPQWAIHYSLAYTSW 298


>pdb|2R8A|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
           Fadl Mutant Delta N8
 pdb|2R8A|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
           Fadl Mutant Delta N8
          Length = 419

 Score = 28.1 bits (61), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 35  FNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKPWWIRAYYLCPTSW 87
           FN  G+ I + T G   +  LT +   M  +  G+    P W   Y L  TSW
Sbjct: 239 FNNYGLPIPTATGGATQSGYLTLNLPEMWEV-SGYNRVDPQWAIHYSLAYTSW 290


>pdb|3OOA|A Chain A, Crystal Structures And Biochemical Characterization Of The
           Bacterial Solute Receptor Acbh Reveal An Unprecedented
           Exclusive Substrate Preference For B-D-Galactopyranose
 pdb|3OOA|B Chain B, Crystal Structures And Biochemical Characterization Of The
           Bacterial Solute Receptor Acbh Reveal An Unprecedented
           Exclusive Substrate Preference For B-D-Galactopyranose
          Length = 415

 Score = 26.9 bits (58), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 78  RAYYLCPTSW---VLNGILSSQYGDTDKE-ISIFGKTKTISSFLD 118
            A +L    W   + NG+++  Y D  K+ ++  GK K++S F+D
Sbjct: 328 EAAFLKTDHWDVGLANGLIAPTYNDIQKKSVAEIGKCKSVSQFMD 372


>pdb|3OO9|A Chain A, Crystal Structures And Biochemical Characterization Of The
           Bacterial Solute Receptor Acbh Reveal An Unprecedented
           Exclusive Substrate Preference For B-D-Galactopyranose
 pdb|3OO9|B Chain B, Crystal Structures And Biochemical Characterization Of The
           Bacterial Solute Receptor Acbh Reveal An Unprecedented
           Exclusive Substrate Preference For B-D-Galactopyranose
          Length = 415

 Score = 26.9 bits (58), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 78  RAYYLCPTSW---VLNGILSSQYGDTDKE-ISIFGKTKTISSFLD 118
            A +L    W   + NG+++  Y D  K+ ++  GK K++S F+D
Sbjct: 328 EAAFLKTDHWDVGLANGLIAPTYNDIQKKSVAEIGKCKSVSQFMD 372


>pdb|3OO6|A Chain A, Crystal Structures And Biochemical Characterization Of The
           Bacterial Solute Receptor Acbh Reveal An Unprecedented
           Exclusive Substrate Preference For B-D-Galactopyranose
 pdb|3OO6|B Chain B, Crystal Structures And Biochemical Characterization Of The
           Bacterial Solute Receptor Acbh Reveal An Unprecedented
           Exclusive Substrate Preference For B-D-Galactopyranose
          Length = 415

 Score = 26.9 bits (58), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 78  RAYYLCPTSW---VLNGILSSQYGDTDKE-ISIFGKTKTISSFLD 118
            A +L    W   + NG+++  Y D  K+ ++  GK K++S F+D
Sbjct: 328 EAAFLKTDHWDVGLANGLIAPTYNDIQKKSVAEIGKCKSVSQFMD 372


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.331    0.144    0.461 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,113,309
Number of Sequences: 62578
Number of extensions: 144008
Number of successful extensions: 256
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 255
Number of HSP's gapped (non-prelim): 18
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.7 bits)