Query 037125
Match_columns 159
No_of_seqs 137 out of 1085
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 08:55:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037125.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037125hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03140 ABC transporter G fam 100.0 8E-32 1.7E-36 245.0 15.8 158 1-159 1296-1470(1470)
2 TIGR00955 3a01204 The Eye Pigm 100.0 2.8E-30 6.2E-35 219.9 14.7 157 2-159 442-617 (617)
3 PLN03140 ABC transporter G fam 100.0 3.5E-28 7.5E-33 221.4 15.3 153 2-155 619-789 (1470)
4 PLN03211 ABC transporter G-25; 100.0 1.3E-28 2.7E-33 210.8 11.7 152 1-156 487-659 (659)
5 TIGR00956 3a01205 Pleiotropic 100.0 4.5E-28 9.9E-33 220.5 15.0 154 2-156 502-695 (1394)
6 TIGR00956 3a01205 Pleiotropic 99.9 5.6E-27 1.2E-31 213.5 14.5 157 1-159 1178-1394(1394)
7 KOG0061 Transporter, ABC super 99.9 6.1E-26 1.3E-30 192.8 13.7 157 2-159 439-612 (613)
8 KOG0065 Pleiotropic drug resis 99.9 8.3E-26 1.8E-30 199.2 13.2 155 2-157 541-732 (1391)
9 KOG0065 Pleiotropic drug resis 99.9 4.2E-23 9.1E-28 182.3 9.5 158 1-159 1204-1387(1391)
10 TIGR03062 pip_yhgE_Cterm YhgE/ 99.2 5.4E-10 1.2E-14 83.2 11.1 123 3-151 69-204 (208)
11 TIGR01247 drrB daunorubicin re 98.9 6.5E-08 1.4E-12 73.4 13.0 124 2-148 98-234 (236)
12 PF01061 ABC2_membrane: ABC-2 98.8 2.9E-10 6.2E-15 83.7 -1.9 96 2-97 102-210 (210)
13 TIGR00025 Mtu_efflux ABC trans 98.7 4.2E-07 9.2E-12 68.9 11.3 96 33-151 127-229 (232)
14 TIGR01291 nodJ ABC-2 type tran 98.4 8.1E-06 1.8E-10 62.8 12.8 96 32-151 149-248 (253)
15 PF06422 PDR_CDR: CDR ABC tran 98.3 8.3E-07 1.8E-11 59.4 4.5 47 111-158 31-77 (103)
16 PF08370 PDR_assoc: Plant PDR 98.2 4.8E-06 1E-10 50.8 5.5 49 109-158 8-58 (65)
17 COG0842 ABC-type multidrug tra 98.2 7.7E-05 1.7E-09 56.8 13.6 100 32-155 179-283 (286)
18 PRK15066 inner membrane transp 98.2 7.1E-05 1.5E-09 57.6 13.2 91 37-151 156-250 (257)
19 TIGR03861 phenyl_ABC_PedC alco 97.7 0.0011 2.5E-08 50.7 12.5 64 32-95 150-220 (253)
20 TIGR01248 drrC daunorubicin re 97.2 0.0051 1.1E-07 43.7 9.7 56 38-94 88-147 (152)
21 PRK15176 Vi polysaccharide exp 95.4 0.21 4.5E-06 38.8 9.3 101 32-158 159-263 (264)
22 PF12698 ABC2_membrane_3: ABC- 94.5 0.01 2.2E-07 46.1 0.0 65 31-95 248-316 (344)
23 COG1682 TagG ABC-type polysacc 93.3 3.1 6.6E-05 32.4 12.5 72 30-101 153-228 (263)
24 PF12051 DUF3533: Protein of u 90.7 2.3 5E-05 34.7 8.8 42 75-141 338-379 (382)
25 TIGR03518 ABC_perm_GldF glidin 89.6 1.8 3.8E-05 33.1 6.8 57 32-88 147-206 (240)
26 PF12679 ABC2_membrane_2: ABC- 84.5 15 0.00032 27.8 9.4 94 35-151 171-273 (277)
27 COG1511 Predicted membrane pro 81.6 11 0.00024 33.9 8.7 79 40-144 673-755 (780)
28 COG1277 NosY ABC-type transpor 50.1 1.1E+02 0.0024 23.2 8.8 105 33-151 159-273 (278)
29 PRK14748 kdpF potassium-transp 49.1 35 0.00076 17.1 3.1 26 132-158 3-28 (29)
30 PRK14750 kdpF potassium-transp 48.6 36 0.00077 17.1 3.1 26 131-157 2-27 (29)
31 PF04971 Lysis_S: Lysis protei 41.2 42 0.0009 20.6 2.9 27 121-149 25-51 (68)
32 PF01102 Glycophorin_A: Glycop 35.1 47 0.001 22.8 2.8 24 128-151 67-90 (122)
33 PF02439 Adeno_E3_CR2: Adenovi 33.9 82 0.0018 17.0 3.1 25 132-157 10-34 (38)
34 PF05393 Hum_adeno_E3A: Human 23.4 1.8E+02 0.004 18.8 3.8 20 132-151 37-56 (94)
35 PF02009 Rifin_STEVOR: Rifin/s 21.9 89 0.0019 24.9 2.6 15 143-158 272-286 (299)
No 1
>PLN03140 ABC transporter G family member; Provisional
Probab=99.98 E-value=8e-32 Score=245.04 Aligned_cols=158 Identities=41% Similarity=0.893 Sum_probs=145.2
Q ss_pred CchhhhHHHHHHHHHHHHHhhhhhH------HHH-----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccc
Q 037125 1 VLVEVSYLFIQAVIYVIITYPMISY------YCM-----LCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGF 69 (159)
Q Consensus 1 ~~~elP~~~i~~~if~~i~Y~~~gl------f~~-----~~~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf 69 (159)
+++|+|+.++.+++|++|+|||+|+ |+. ++..++++++|+++++++||.+.|..+++++..++++|+||
T Consensus 1296 ~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf 1375 (1470)
T PLN03140 1296 VVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGF 1375 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeee
Confidence 3689999999999999999999999 322 33456788999999999999999999999999999999999
Q ss_pred ccCcc----chhhhhccchHHHHHHHHHHhhhCCCcccccccC--CCccHHHHHHhhcCCcccCccchhhhHHhHHHHHH
Q 037125 70 TITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISIFG--KTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLA 143 (159)
Q Consensus 70 ~i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~w~~~~il~~~~~~~~ 143 (159)
++|++ ||+|++|+||++|+++|++.|||+|.+.+|++++ ++.++++++++++|++++++|.++++++++.++|+
T Consensus 1376 ~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~ 1455 (1470)
T PLN03140 1376 FIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFA 1455 (1470)
T ss_pred ccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHH
Confidence 99987 9999999999999999999999999888777665 34688999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccCC
Q 037125 144 SLFAHFIGNKLNFQRS 159 (159)
Q Consensus 144 ~l~~~~l~~~~~~~kr 159 (159)
+++++++| ++||+||
T Consensus 1456 ~~~~~~~~-~~~~q~r 1470 (1470)
T PLN03140 1456 FIFAFCIR-TLNFQTR 1470 (1470)
T ss_pred HHHHHHHH-HhhcccC
Confidence 99999999 9999998
No 2
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.97 E-value=2.8e-30 Score=219.91 Aligned_cols=157 Identities=20% Similarity=0.213 Sum_probs=135.4
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhH------HHHH-----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccc
Q 037125 2 LVEVSYLFIQAVIYVIITYPMISY------YCML-----CNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFT 70 (159)
Q Consensus 2 ~~elP~~~i~~~if~~i~Y~~~gl------f~~~-----~~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~ 70 (159)
++|+|..++.+++|++|+|||+|+ |+.+ +..++++++|+++++++||.+.|+.+++++..++++|+||+
T Consensus 442 l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~ 521 (617)
T TIGR00955 442 IAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFF 521 (617)
T ss_pred HHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcc
Confidence 689999999999999999999998 3332 23456788999999999999999999999999999999999
Q ss_pred cCcc----chhhhhccchHHHHHHHHHHhhhCCCcc-cccccCCCc---cHHHHHHhhcCCcccCccchhhhHHhHHHHH
Q 037125 71 ITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDK-EISIFGKTK---TISSFLDDYFGFNYDLLGVVGIVPIIFPIVL 142 (159)
Q Consensus 71 i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~-~~~~~~~~~---~~~~~~~~~~g~~~~~~w~~~~il~~~~~~~ 142 (159)
++++ ||+|++|+||++|++||++.|||++.+. +|...+.+. ..|+++++.+|++.++.|.|+++++++.++|
T Consensus 522 i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~~~~~~~il~~~~~~~ 601 (617)
T TIGR00955 522 INSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFF 601 (617)
T ss_pred cChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcccHHHHHHHHHHHHHHH
Confidence 9886 9999999999999999999999998764 443211111 1267888899999889999999999999999
Q ss_pred HHHHHHHHHhhhcccCC
Q 037125 143 ASLFAHFIGNKLNFQRS 159 (159)
Q Consensus 143 ~~l~~~~l~~~~~~~kr 159 (159)
+++++++|| +..+++|
T Consensus 602 ~~l~~~~L~-~~~~~~~ 617 (617)
T TIGR00955 602 RLLAYFALR-IRIRRKR 617 (617)
T ss_pred HHHHHHHHH-HHhhccC
Confidence 999999999 7777766
No 3
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=3.5e-28 Score=221.43 Aligned_cols=153 Identities=20% Similarity=0.267 Sum_probs=131.1
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhH------HHHHH-----HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccc
Q 037125 2 LVEVSYLFIQAVIYVIITYPMISY------YCMLC-----NLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFT 70 (159)
Q Consensus 2 ~~elP~~~i~~~if~~i~Y~~~gl------f~~~~-----~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~ 70 (159)
++|+|..++.+++|++|+|||+|| |+.++ ..+++++++.++++++||...|+.++++.++++++|+||+
T Consensus 619 l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~ 698 (1470)
T PLN03140 619 LLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFI 698 (1470)
T ss_pred HHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccce
Confidence 689999999999999999999999 44333 3456778999999999999999999999999999999999
Q ss_pred cCcc----chhhhhccchHHHHHHHHHHhhhCCCccc-ccccCCCccHHHHHHhhcCCccc--CccchhhhHHhHHHHHH
Q 037125 71 ITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKE-ISIFGKTKTISSFLDDYFGFNYD--LLGVVGIVPIIFPIVLA 143 (159)
Q Consensus 71 i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~--~~w~~~~il~~~~~~~~ 143 (159)
++++ ||+|++|+||++||+||++.|||.+.+.+ +.+.+...+.|+.+++.+|++.+ +.|.++++|++++++|+
T Consensus 699 i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~ 778 (1470)
T PLN03140 699 LPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFN 778 (1470)
T ss_pred echHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHH
Confidence 9987 99999999999999999999999876533 11112234557777788999765 56999999999999999
Q ss_pred HHHHHHHHhhhc
Q 037125 144 SLFAHFIGNKLN 155 (159)
Q Consensus 144 ~l~~~~l~~~~~ 155 (159)
++++++|+ +++
T Consensus 779 ~l~~l~L~-~~~ 789 (1470)
T PLN03140 779 VLFTLALT-YLN 789 (1470)
T ss_pred HHHHHHHH-hcC
Confidence 99999999 776
No 4
>PLN03211 ABC transporter G-25; Provisional
Probab=99.96 E-value=1.3e-28 Score=210.77 Aligned_cols=152 Identities=14% Similarity=0.134 Sum_probs=124.7
Q ss_pred CchhhhHHHHHHHHHHHHHhhhhhH------HHH-----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccc
Q 037125 1 VLVEVSYLFIQAVIYVIITYPMISY------YCM-----LCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGF 69 (159)
Q Consensus 1 ~~~elP~~~i~~~if~~i~Y~~~gl------f~~-----~~~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf 69 (159)
+++|+|+.++.+++|++|+|||+|| |+. ++..++++++|+++++++||.+.|+.++++++.++++|+||
T Consensus 487 ~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf 566 (659)
T PLN03211 487 IVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGF 566 (659)
T ss_pred HHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhh
Confidence 3689999999999999999999999 332 33456788999999999999999999999999999999999
Q ss_pred ccCcc---chhhhhccchHHHHHHHHHHhhhCCCcc-----cccccCC--CccHHHHHHhhcCCcccCccchhhhHHhHH
Q 037125 70 TITKP---WWIRAYYLCPTSWVLNGILSSQYGDTDK-----EISIFGK--TKTISSFLDDYFGFNYDLLGVVGIVPIIFP 139 (159)
Q Consensus 70 ~i~~~---~~~W~~yisp~~ya~~~l~~nef~~~~~-----~~~~~~~--~~~~~~~~~~~~g~~~~~~w~~~~il~~~~ 139 (159)
+++ + ||+|++|+||++|++||++.|||++.+. +|+.+.+ ...|. .....++++.+.|.|+++|+++.
T Consensus 567 ~i~-~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~--~~~~~~~~~~~~~~~~~~l~~~~ 643 (659)
T PLN03211 567 YVH-KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCK--FVEEDVAGQISPATSVSVLIFMF 643 (659)
T ss_pred hHh-hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCc--cchhhhhcccchHHHHHHHHHHH
Confidence 997 4 9999999999999999999999987643 3422211 11121 12223444567999999999999
Q ss_pred HHHHHHHHHHHHhhhcc
Q 037125 140 IVLASLFAHFIGNKLNF 156 (159)
Q Consensus 140 ~~~~~l~~~~l~~~~~~ 156 (159)
++||+++|++|| ++||
T Consensus 644 ~~~~~l~~~~L~-~~~~ 659 (659)
T PLN03211 644 VGYRLLAYLALR-RIKH 659 (659)
T ss_pred HHHHHHHHHHHH-hccC
Confidence 999999999999 7765
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.95 E-value=4.5e-28 Score=220.55 Aligned_cols=154 Identities=17% Similarity=0.256 Sum_probs=133.3
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhH------HHHH-----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccc
Q 037125 2 LVEVSYLFIQAVIYVIITYPMISY------YCML-----CNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFT 70 (159)
Q Consensus 2 ~~elP~~~i~~~if~~i~Y~~~gl------f~~~-----~~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~ 70 (159)
++|+|+.++.+++|++|+|||+|| |+.+ +..+++.+++.++++++||.+.|+.++++.+.++++|+||+
T Consensus 502 l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~ 581 (1394)
T TIGR00956 502 ISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFA 581 (1394)
T ss_pred HHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccc
Confidence 689999999999999999999999 4432 23445678999999999999999999999999999999999
Q ss_pred cCcc----chhhhhccchHHHHHHHHHHhhhCCCcccccc--cC-------------C---------C-ccHHHHHHhhc
Q 037125 71 ITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISI--FG-------------K---------T-KTISSFLDDYF 121 (159)
Q Consensus 71 i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~--~~-------------~---------~-~~~~~~~~~~~ 121 (159)
+|++ ||+|++|+||++|++||++.|||++.+.+|+. |. | . .++++++.+.+
T Consensus 582 i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~ 661 (1394)
T TIGR00956 582 IPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSF 661 (1394)
T ss_pred cChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcC
Confidence 9987 99999999999999999999999998877741 10 0 1 13456776678
Q ss_pred CCcccCccchhhhHHhHHHHHHHHHHHHHHhhhcc
Q 037125 122 GFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNF 156 (159)
Q Consensus 122 g~~~~~~w~~~~il~~~~~~~~~l~~~~l~~~~~~ 156 (159)
|++++++|+|++++++++++|+++++++++ ++++
T Consensus 662 ~~~~~~~w~n~gil~~~~v~f~~~~~l~l~-~~~~ 695 (1394)
T TIGR00956 662 QYYNSHKWRNFGIIIGFTVFFFFVYILLTE-FNKG 695 (1394)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHHH-hccc
Confidence 999999999999999999999999999999 7763
No 6
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.95 E-value=5.6e-27 Score=213.47 Aligned_cols=157 Identities=20% Similarity=0.312 Sum_probs=130.7
Q ss_pred CchhhhHHHHHHHHHHHHHhhhhhH-------------HH-----HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q 037125 1 VLVEVSYLFIQAVIYVIITYPMISY-------------YC-----MLCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSM 62 (159)
Q Consensus 1 ~~~elP~~~i~~~if~~i~Y~~~gl-------------f~-----~~~~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~ 62 (159)
+++|+|+.++.+++|.+++|||+|+ |+ .++..++++++|+++++++||.+.|+.+++++..+
T Consensus 1178 ~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~ 1257 (1394)
T TIGR00956 1178 ITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTM 1257 (1394)
T ss_pred HHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 3689999999999999999999997 22 12334567899999999999999999999999999
Q ss_pred HHHhcccccCcc----chhhhhccchHHHHHHHHHHhhhCCCcccccc-------cCCCccH------------------
Q 037125 63 LNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISI-------FGKTKTI------------------ 113 (159)
Q Consensus 63 ~~lf~Gf~i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~-------~~~~~~~------------------ 113 (159)
+++|||++++++ ||+|++|+||++|++||++.|||++.+.+|.. |+.+++|
T Consensus 1258 ~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~ 1337 (1394)
T TIGR00956 1258 CLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNP 1337 (1394)
T ss_pred HHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCC
Confidence 999999999987 99999999999999999999999998765532 1122333
Q ss_pred -------------HHHHHhhcCCcccCccchhhhHHhHHHHHHHHHHHHHHhhhcccCC
Q 037125 114 -------------SSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQRS 159 (159)
Q Consensus 114 -------------~~~~~~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~l~~~~~~~kr 159 (159)
|+..++.+|++.+++|+|+++++++++++ ++++++++ ++.+.+|
T Consensus 1338 ~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~-~~~r~~k 1394 (1394)
T TIGR00956 1338 NATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATVFFY-WLARVPK 1394 (1394)
T ss_pred CCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHHhhh-eEEEcCC
Confidence 34445678998899999999999999977 88888888 6554443
No 7
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=6.1e-26 Score=192.81 Aligned_cols=157 Identities=18% Similarity=0.257 Sum_probs=133.6
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhH------HHH-----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccc
Q 037125 2 LVEVSYLFIQAVIYVIITYPMISY------YCM-----LCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFT 70 (159)
Q Consensus 2 ~~elP~~~i~~~if~~i~Y~~~gl------f~~-----~~~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~ 70 (159)
++|+|+.++.+++|.+++|||+|+ |+. ++..+.++++|++++++.||...|..+++++...+++++||+
T Consensus 439 l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~f 518 (613)
T KOG0061|consen 439 LAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFF 518 (613)
T ss_pred HHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhh
Confidence 579999999999999999999998 322 334567889999999999999999999999999999999999
Q ss_pred cCcc----chhhhhccchHHHHHHHHHHhhhCCCccccccc--CCCccHHHHHHhhcCCcccCccchhhhHHhHHHHHHH
Q 037125 71 ITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISIF--GKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLAS 144 (159)
Q Consensus 71 i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~w~~~~il~~~~~~~~~ 144 (159)
++.+ ||+|++|+|++||++||++.|||++...+|... .+....++..++..++++++.|.|+.++.++.++||+
T Consensus 519 i~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~i 598 (613)
T KOG0061|consen 519 INFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRV 598 (613)
T ss_pred cCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHH
Confidence 9987 999999999999999999999999733334221 2233445666678999999999999999999999999
Q ss_pred HHHHHHHhhhcccCC
Q 037125 145 LFAHFIGNKLNFQRS 159 (159)
Q Consensus 145 l~~~~l~~~~~~~kr 159 (159)
++|++|| +..+++|
T Consensus 599 l~y~~L~-~~~~~~~ 612 (613)
T KOG0061|consen 599 LGYLALR-FRVKRKR 612 (613)
T ss_pred HHHHHHH-hhccccC
Confidence 9999999 6555543
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=8.3e-26 Score=199.18 Aligned_cols=155 Identities=19% Similarity=0.336 Sum_probs=132.3
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhH------HHHHHH-----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccc
Q 037125 2 LVEVSYLFIQAVIYVIITYPMISY------YCMLCN-----LLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFT 70 (159)
Q Consensus 2 ~~elP~~~i~~~if~~i~Y~~~gl------f~~~~~-----~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~ 70 (159)
+.|+|..++.+++|.+|+||++|+ ||.+++ ..++.++..++++++|+...|+.++++.++...+++||.
T Consensus 541 l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~ 620 (1391)
T KOG0065|consen 541 LLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFV 620 (1391)
T ss_pred HHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHccee
Confidence 579999999999999999999999 544332 334667888999999999999999999999999999999
Q ss_pred cCcc----chhhhhccchHHHHHHHHHHhhhCCCcccccccC--------CC--------------ccHHHHHHhhcCCc
Q 037125 71 ITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISIFG--------KT--------------KTISSFLDDYFGFN 124 (159)
Q Consensus 71 i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~~~--------~~--------------~~~~~~~~~~~g~~ 124 (159)
||++ ||+|++|+||+.|++|+++.|||++++.+|...+ .+ ..+.++++..|+++
T Consensus 621 Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~ 700 (1391)
T KOG0065|consen 621 IPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYE 700 (1391)
T ss_pred eeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEecccccccccccc
Confidence 9987 8999999999999999999999999998886111 01 12345666667777
Q ss_pred ccCccchhhhHHhHHHHHHHHHHHHHHhhhccc
Q 037125 125 YDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQ 157 (159)
Q Consensus 125 ~~~~w~~~~il~~~~~~~~~l~~~~l~~~~~~~ 157 (159)
+++.|+++++++++.++|.++..+++. ++|..
T Consensus 701 ~~~~Wr~~gillgf~v~f~~~~~ia~~-yl~p~ 732 (1391)
T KOG0065|consen 701 YKWYWRNFGILLGFTVFFNFVFLIALE-YLKPL 732 (1391)
T ss_pred cceeEeehhHHHHHHHHHHHHHHHHHH-hcCcc
Confidence 889999999999999999999999999 88853
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.89 E-value=4.2e-23 Score=182.26 Aligned_cols=158 Identities=37% Similarity=0.668 Sum_probs=136.8
Q ss_pred CchhhhHHHHHHHHHHHHHhhhhhH-----------HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccc
Q 037125 1 VLVEVSYLFIQAVIYVIITYPMISY-----------YCMLCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGF 69 (159)
Q Consensus 1 ~~~elP~~~i~~~if~~i~Y~~~gl-----------f~~~~~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf 69 (159)
+++|+|+.++++.+|.+++|+++|+ ++.+++.+..+++|+++.+++||.+.|..+.+.+.+++.+|||+
T Consensus 1204 ~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~ 1283 (1391)
T KOG0065|consen 1204 VLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGF 1283 (1391)
T ss_pred HHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhccc
Confidence 3689999999999999999999999 12344456678999999999999999999999999999999999
Q ss_pred ccCcc----chhhhhccchHHHHHHHHHHhhhCCCcccccc-------cCCCccHHHHHHhhcC----CcccCccchhhh
Q 037125 70 TITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISI-------FGKTKTISSFLDDYFG----FNYDLLGVVGIV 134 (159)
Q Consensus 70 ~i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~-------~~~~~~~~~~~~~~~g----~~~~~~w~~~~i 134 (159)
++|++ ||+|+||+||.+|..+|+...+++|.+.+|.. |.++++||+++++.+| +.++..-....+
T Consensus 1284 l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~ 1363 (1391)
T KOG0065|consen 1284 LQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACV 1363 (1391)
T ss_pred ccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEE
Confidence 99987 99999999999999999999999998866643 3367899999999999 666655555567
Q ss_pred HHhHHHHHHHHHHHHHHhhhcccCC
Q 037125 135 PIIFPIVLASLFAHFIGNKLNFQRS 159 (159)
Q Consensus 135 l~~~~~~~~~l~~~~l~~~~~~~kr 159 (159)
.+.+.+.+..++.+..| +.++.||
T Consensus 1364 ~c~y~v~~~~l~~f~~~-y~~~wrn 1387 (1391)
T KOG0065|consen 1364 YCAYTVADAFLAAFNIK-YLNFWRN 1387 (1391)
T ss_pred EeeeehHHHHHHHHHHH-HHHHHHh
Confidence 77788899999999999 8877765
No 10
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.16 E-value=5.4e-10 Score=83.25 Aligned_cols=123 Identities=15% Similarity=0.047 Sum_probs=91.5
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhH----H-----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCc
Q 037125 3 VEVSYLFIQAVIYVIITYPMISY----Y-----CMLCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITK 73 (159)
Q Consensus 3 ~elP~~~i~~~if~~i~Y~~~gl----f-----~~~~~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~ 73 (159)
...+..++++.+...+.|+..|+ + ...+..+...++|..+++..++.+.+. ......+.+.++|.+.|.
T Consensus 69 ~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~~~~~~~~sG~~~P~ 146 (208)
T TIGR03062 69 PGGLIGVLQAIILYGVLILGLGLDPAHPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVLLVLQLGSSGGTFPI 146 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHHHHHHHccCCCccch
Confidence 45677888888888888888887 2 123334566788899999998765443 334455666778888888
Q ss_pred c----chhhhhccchHHHHHHHHHHhhhCCCcccccccCCCccHHHHHHhhcCCcccCccchhhhHHhHHHHHHHHHHHH
Q 037125 74 P----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISIFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHF 149 (159)
Q Consensus 74 ~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~ 149 (159)
+ |++|+.+++|.+|+.|++....+++. .++.|.+++++.++.+++..++...
T Consensus 147 ~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~------------------------~~~~~~~~~~L~~~~~v~~~la~~~ 202 (208)
T TIGR03062 147 ELLPAFFQAIHPFLPMTYSVNGLRQLISGGN------------------------DGTLWQAVAVLLLILVVFLALSLLS 202 (208)
T ss_pred hhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 99999999999999999977666442 1235678889999988887777776
Q ss_pred HH
Q 037125 150 IG 151 (159)
Q Consensus 150 l~ 151 (159)
.|
T Consensus 203 ~~ 204 (208)
T TIGR03062 203 AR 204 (208)
T ss_pred Hh
Confidence 66
No 11
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.89 E-value=6.5e-08 Score=73.38 Aligned_cols=124 Identities=12% Similarity=0.123 Sum_probs=92.9
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhH----H-----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccC
Q 037125 2 LVEVSYLFIQAVIYVIITYPMISY----Y-----CMLCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTIT 72 (159)
Q Consensus 2 ~~elP~~~i~~~if~~i~Y~~~gl----f-----~~~~~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~ 72 (159)
+.+++..++...+...+.++..+. . ......+...++|..+++..+|.+.++.+.+....+...+||.+.|
T Consensus 98 l~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~~~~~l~~lsG~~~P 177 (236)
T TIGR01247 98 LGGSTVAMIQGAIILALSFIVAILKPSGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSMLMLPMFFLSGAFYP 177 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 356777888888888888877665 1 1122233457899999999999999999999999999999999998
Q ss_pred cc----chhhhhccchHHHHHHHHHHhhhCCCcccccccCCCccHHHHHHhhcCCcccCccchhhhHHhHHHHHHHHHHH
Q 037125 73 KP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISIFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAH 148 (159)
Q Consensus 73 ~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~il~~~~~~~~~l~~~ 148 (159)
.+ |++|+.+.+|.+|+.|++.....++.. ..+.+.+++++..+.+++..++..
T Consensus 178 ~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 178 ITTMPAWMQGLAKINPLTYAVDGARYYLAGVSP-----------------------TFPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred HHhCHHHHHHHHHHCcHHHHHHHHHHHHhCCCc-----------------------ccchHHHHHHHHHHHHHHHHHHHH
Confidence 87 889999999999999997654332221 123456778888888777666543
No 12
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=98.82 E-value=2.9e-10 Score=83.68 Aligned_cols=96 Identities=21% Similarity=0.417 Sum_probs=82.9
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhH-H---HH-----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccC
Q 037125 2 LVEVSYLFIQAVIYVIITYPMISY-Y---CM-----LCNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTIT 72 (159)
Q Consensus 2 ~~elP~~~i~~~if~~i~Y~~~gl-f---~~-----~~~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~ 72 (159)
+.+++..++.++++..+.|.+.|+ . .. .+..+++.++|..+++++++.+.+..+.+....+.+.+||.+.|
T Consensus 102 l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~~p 181 (210)
T PF01061_consen 102 LSAFLISLIISLIVLIIAYLLFGLDFESFFLFLLILLLSILCSSGLGLLLAALFPSFRDASAISSLILLLLFFLSGVFFP 181 (210)
T ss_pred cccccccccccchhhhhhhhhhccccccchheecccccccccccccccccccchhhhhhhhhhhhhcccccccceeeecc
Confidence 467888889999999999999887 2 21 22344567799999999999999999999999999999999999
Q ss_pred cc----chhhhhccchHHHHHHHHHHhhh
Q 037125 73 KP----WWIRAYYLCPTSWVLNGILSSQY 97 (159)
Q Consensus 73 ~~----~~~W~~yisp~~ya~~~l~~nef 97 (159)
.+ |++|+.++||++|+.|++..++|
T Consensus 182 ~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 182 LSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 87 88999999999999999999876
No 13
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=98.67 E-value=4.2e-07 Score=68.85 Aligned_cols=96 Identities=11% Similarity=0.019 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHhcccccCcc----chhhhhccchHHHHHHHHHHhhhCCCccccc
Q 037125 33 LYFNYMGMLIVSLT---PGVQVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEIS 105 (159)
Q Consensus 33 l~~~s~~~~i~~~~---~~~~~a~~~~~~~~~~~~lf~Gf~i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~ 105 (159)
..+..++.+++++. ++.+.+..+.+....+...+||.+.|.+ |++|+.+++|++|+.+++.....++..
T Consensus 127 ~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~~~---- 202 (232)
T TIGR00025 127 ALGTALFAALGLVAGGTLQAEIVLAVANLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVSVD---- 202 (232)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCCCC----
Confidence 44556666666666 4455558888888899999999999987 999999999999999988654333211
Q ss_pred ccCCCccHHHHHHhhcCCcccCccchhhhHHhHHHHHHHHHHHHHH
Q 037125 106 IFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIG 151 (159)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~l~ 151 (159)
.+..|.+++.+.++.+++..++....|
T Consensus 203 -------------------~~~~~~~~~~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 203 -------------------TFGAVRDLVVVLAFWVALAALAAIRLR 229 (232)
T ss_pred -------------------hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 134566777888887776666655554
No 14
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=98.43 E-value=8.1e-06 Score=62.82 Aligned_cols=96 Identities=14% Similarity=0.145 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCcc----chhhhhccchHHHHHHHHHHhhhCCCccccccc
Q 037125 32 LLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISIF 107 (159)
Q Consensus 32 ~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~~ 107 (159)
.+...++|.++++..++.+.+..+.+....+++..||.+.|.+ |++++.+.||++|+.|++-...+++..
T Consensus 149 ~l~~~~lg~~~a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~~~------ 222 (253)
T TIGR01291 149 GLAFASLSMLVAALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGGPG------ 222 (253)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCCCc------
Confidence 3445679999999999999999999999999999999999887 889999999999999997655433211
Q ss_pred CCCccHHHHHHhhcCCcccCccchhhhHHhHHHHHHHHHHHHHH
Q 037125 108 GKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIG 151 (159)
Q Consensus 108 ~~~~~~~~~~~~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~l~ 151 (159)
.+.|.+++++.++.+++..++....|
T Consensus 223 ------------------~~~~~~~~~l~~~~vv~~~la~~~fr 248 (253)
T TIGR01291 223 ------------------TQVGLHLGALCLYAVVPFFISAALLR 248 (253)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12345677888888777666665555
No 15
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=98.33 E-value=8.3e-07 Score=59.37 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=42.1
Q ss_pred ccHHHHHHhhcCCcccCccchhhhHHhHHHHHHHHHHHHHHhhhcccC
Q 037125 111 KTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQR 158 (159)
Q Consensus 111 ~~~~~~~~~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~l~~~~~~~k 158 (159)
.++.+|+...++++.+++|+|++|+++++++|.++.+++++ +++.+|
T Consensus 31 V~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e-~~~~~~ 77 (103)
T PF06422_consen 31 VSGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATE-FIKFEK 77 (103)
T ss_pred EeHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHH-HhcccC
Confidence 45778898899999999999999999999999999999999 877653
No 16
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=98.21 E-value=4.8e-06 Score=50.77 Aligned_cols=49 Identities=14% Similarity=0.032 Sum_probs=42.7
Q ss_pred CCccHHHHHHhhcCCccc--CccchhhhHHhHHHHHHHHHHHHHHhhhcccC
Q 037125 109 KTKTISSFLDDYFGFNYD--LLGVVGIVPIIFPIVLASLFAHFIGNKLNFQR 158 (159)
Q Consensus 109 ~~~~~~~~~~~~~g~~~~--~~w~~~~il~~~~~~~~~l~~~~l~~~~~~~k 158 (159)
++.|.|+.+++.+|+..+ +.|..+++|+++.++|+++..++|. +++...
T Consensus 8 ~~~tlG~~vL~~rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~-yL~p~~ 58 (65)
T PF08370_consen 8 NNSTLGVAVLKSRGLFTESYWYWIGVGALLGFIVLFNILFTLALT-YLNPLG 58 (65)
T ss_pred CCCcHHHHHHHHcCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHH-hcCCcC
Confidence 357889999999999765 6888999999999999999999999 888653
No 17
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.21 E-value=7.7e-05 Score=56.85 Aligned_cols=100 Identities=17% Similarity=0.260 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHhcccccCcc----chhhhhccchHHHHHHHHHHhhhCCCcccccc
Q 037125 32 LLYFNYMGMLIV-SLTPGVQVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISI 106 (159)
Q Consensus 32 ~l~~~s~~~~i~-~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~ 106 (159)
.+...++|.+++ ...++.+.+..+++....+...++|.+.|.+ +.+|+.+++|.+|+.|++.....++...
T Consensus 179 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~~---- 254 (286)
T COG0842 179 LLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWRN---- 254 (286)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCch----
Confidence 344566777555 3667778888889899999999999999987 7899999999999999997666544321
Q ss_pred cCCCccHHHHHHhhcCCcccCccchhhhHHhHHHHHHHHHHHHHHhhhc
Q 037125 107 FGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLN 155 (159)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~l~~~~~ 155 (159)
++.|.+.+++.++.+++..++...+| +.+
T Consensus 255 -------------------~~~~~~~~~l~~~~~v~~~~~~~~~~-~~~ 283 (286)
T COG0842 255 -------------------DGIWISLLILLLFAVVFLLLGLLLLR-RRR 283 (286)
T ss_pred -------------------hhHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 22677888999999988888888888 443
No 18
>PRK15066 inner membrane transport permease; Provisional
Probab=98.20 E-value=7.1e-05 Score=57.60 Aligned_cols=91 Identities=18% Similarity=0.190 Sum_probs=72.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCcc----chhhhhccchHHHHHHHHHHhhhCCCcccccccCCCcc
Q 037125 37 YMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISIFGKTKT 112 (159)
Q Consensus 37 s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~~~~~~~ 112 (159)
..|..+++..++.+..+.+.+....+.+..||.+.|.+ |++|+.+.||++|..|++-..-.++.
T Consensus 156 ~~gl~~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g~~------------ 223 (257)
T PRK15066 156 LGGLINAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLGIS------------ 223 (257)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcCCC------------
Confidence 34788888889988899999999999999999988876 88999999999999999875433211
Q ss_pred HHHHHHhhcCCcccCccchhhhHHhHHHHHHHHHHHHHH
Q 037125 113 ISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIG 151 (159)
Q Consensus 113 ~~~~~~~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~l~ 151 (159)
..+.|.+++++.++.++...++....|
T Consensus 224 ------------~~~~~~~l~~l~~~~~v~~~la~~~~~ 250 (257)
T PRK15066 224 ------------DVPLWLAFAVLLVFIVVLYLLAWYLLE 250 (257)
T ss_pred ------------CccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 113466788888888877777777776
No 19
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=97.74 E-value=0.0011 Score=50.70 Aligned_cols=64 Identities=8% Similarity=0.070 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCc------c-chhhhhccchHHHHHHHHHHh
Q 037125 32 LLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITK------P-WWIRAYYLCPTSWVLNGILSS 95 (159)
Q Consensus 32 ~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~------~-~~~W~~yisp~~ya~~~l~~n 95 (159)
.+...++|.++++.+++.+.++.+.+....+++..+|.+.|. + |++|+.++||+.|..|++...
T Consensus 150 ~~~~~~lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~ 220 (253)
T TIGR03861 150 AFMLGALGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA 220 (253)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH
Confidence 345668999999999999999999998888999999988664 2 889999999999999988643
No 20
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=97.25 E-value=0.0051 Score=43.74 Aligned_cols=56 Identities=9% Similarity=-0.094 Sum_probs=41.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCcc----chhhhhccchHHHHHHHHHH
Q 037125 38 MGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILS 94 (159)
Q Consensus 38 ~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~----~~~W~~yisp~~ya~~~l~~ 94 (159)
++..++...++.+. .........+....+|.+.|.+ |.+|+-+++|++|+.|++-.
T Consensus 88 l~~~~a~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R~ 147 (152)
T TIGR01248 88 LVMAMALRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACAD 147 (152)
T ss_pred HHHHHHHHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHHH
Confidence 44445444565544 4345667777778888888886 88999999999999999863
No 21
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=95.35 E-value=0.21 Score=38.82 Aligned_cols=101 Identities=11% Similarity=-0.003 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCcc----chhhhhccchHHHHHHHHHHhhhCCCccccccc
Q 037125 32 LLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTDKEISIF 107 (159)
Q Consensus 32 ~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~~ 107 (159)
.+++.++|..+|++..-......+.+..+.+.+-.+|.+-+.+ .++++.+.||+.+..|+.-..-+++..
T Consensus 159 ~l~~~glglils~l~v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~~~~~il~~NPl~~~ie~~R~~~~~~~~------ 232 (264)
T PRK15176 159 WLLGLSFGYFCDALSERFPLVYKAVPVMLRPMFLISAVFYTANELPYSLLSIFSWNPLLHANEIVREGMFEGYH------ 232 (264)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHhhhHHhCcHHHHHHHHHCcHHHHHHHHHHHHhcCcC------
Confidence 3445566666555442222233344455556666666554443 678888899999999998777665421
Q ss_pred CCCccHHHHHHhhcCCcccCccchhhhHHhHHHHHHHHHHHHHHhhhcccC
Q 037125 108 GKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIGNKLNFQR 158 (159)
Q Consensus 108 ~~~~~~~~~~~~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~l~~~~~~~k 158 (159)
..|.+.....++.++..+++....| +.|.|.
T Consensus 233 -------------------~~~~~~~~~~~~~~~~l~~G~~~~~-~~~~~~ 263 (264)
T PRK15176 233 -------------------SLYLEPFYPLAFSATLFLAGLIFHL-ICDTEN 263 (264)
T ss_pred -------------------ccccChHHHHHHHHHHHHHHHHHHH-HHHhcC
Confidence 1122335666677777777888888 666553
No 22
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=94.51 E-value=0.01 Score=46.09 Aligned_cols=65 Identities=18% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCcc----chhhhhccchHHHHHHHHHHh
Q 037125 31 NLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSS 95 (159)
Q Consensus 31 ~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~----~~~W~~yisp~~ya~~~l~~n 95 (159)
..+...+++.+++.++++...|+.+++++..+.+..+|...+.+ +++++.++.|..+..+++...
T Consensus 248 ~~~~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~~~~ 316 (344)
T PF12698_consen 248 FSLAFISFGFLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSFLQWISSFLPFYWFIQGLRNI 316 (344)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34556789999999999999998888877775555555444332 888888899999987776443
No 23
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.33 E-value=3.1 Score=32.40 Aligned_cols=72 Identities=11% Similarity=0.123 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCcc----chhhhhccchHHHHHHHHHHhhhCCCc
Q 037125 30 CNLLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKP----WWIRAYYLCPTSWVLNGILSSQYGDTD 101 (159)
Q Consensus 30 ~~~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~----~~~W~~yisp~~ya~~~l~~nef~~~~ 101 (159)
...+++.+.|+.+|+++--...-..+.+.+.-+++-.+|.+=+.+ -+++....||+.+-.|..-..-+++..
T Consensus 153 ~l~l~~~g~~l~~a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~~~ 228 (263)
T COG1682 153 LLILFSVGLGLILASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGGDV 228 (263)
T ss_pred HHHHHHHHHHHHHHhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCCCc
Confidence 334566777887777765444444555566666777777766665 778999999999999999877776543
No 24
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=90.71 E-value=2.3 Score=34.71 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=32.7
Q ss_pred chhhhhccchHHHHHHHHHHhhhCCCcccccccCCCccHHHHHHhhcCCcccCccchhhhHHhHHHH
Q 037125 75 WWIRAYYLCPTSWVLNGILSSQYGDTDKEISIFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIV 141 (159)
Q Consensus 75 ~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~il~~~~~~ 141 (159)
+.||.|=. |++.++|++.+.-|++.+ .+..+++++|.++.++
T Consensus 338 fyr~gya~-P~~n~~~~~r~I~fd~~~------------------------~~lg~n~gil~aw~~v 379 (382)
T PF12051_consen 338 FYRYGYAM-PMHNIYEGLRVIFFDTCK------------------------GQLGRNYGILFAWIVV 379 (382)
T ss_pred HHHHhhhh-hHHHHHHHHHHheeCCCc------------------------ccccchHHHHHHHHHH
Confidence 88999999 999999999888554322 2456678888888765
No 25
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=89.60 E-value=1.8 Score=33.07 Aligned_cols=57 Identities=14% Similarity=-0.034 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCc--c-chhhhhccchHHHH
Q 037125 32 LLYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITK--P-WWIRAYYLCPTSWV 88 (159)
Q Consensus 32 ~l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~--~-~~~W~~yisp~~ya 88 (159)
.....++|.++|++++++..|..++......+...-+...+. + +.+|+.|+||.+|-
T Consensus 147 ~~~~~aig~~iSsl~~~q~~a~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~sp~~~~ 206 (240)
T TIGR03518 147 GSVYTAIGLFASSLTENQIVAFIIAVFLCFLFYFGFDGLASLLWGGSAYTISELGLSYHY 206 (240)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHcCHHHHH
Confidence 345668999999999998888655544332222211122222 2 67899999997664
No 26
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=84.51 E-value=15 Score=27.84 Aligned_cols=94 Identities=17% Similarity=0.161 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccc---Ccc-chhh-----hhccchHHHHHHHHHHhhhCCCccccc
Q 037125 35 FNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTI---TKP-WWIR-----AYYLCPTSWVLNGILSSQYGDTDKEIS 105 (159)
Q Consensus 35 ~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i---~~~-~~~W-----~~yisp~~ya~~~l~~nef~~~~~~~~ 105 (159)
..+++.++|+..+|...|...+............... ... +..| +++++|.++ ++....+..++...
T Consensus 171 ~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~--- 246 (277)
T PF12679_consen 171 FISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSP-FNLLIGSILGGGFV--- 246 (277)
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHH-HHHHHHHhhccccc---
Confidence 4789999999999988888777765554433333222 222 3233 366666652 22222222211100
Q ss_pred ccCCCccHHHHHHhhcCCcccCccchhhhHHhHHHHHHHHHHHHHH
Q 037125 106 IFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIG 151 (159)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~l~ 151 (159)
....|.+++.+.++.+++..+++...+
T Consensus 247 -------------------~~~~~~~~~~~~~~~~v~l~la~~~F~ 273 (277)
T PF12679_consen 247 -------------------WLSTWPSLLILLAYTLVFLALAYYRFQ 273 (277)
T ss_pred -------------------hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 035677888999998888888885555
No 27
>COG1511 Predicted membrane protein [Function unknown]
Probab=81.62 E-value=11 Score=33.87 Aligned_cols=79 Identities=19% Similarity=0.103 Sum_probs=44.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcccc--cCcc--chhhhhccchHHHHHHHHHHhhhCCCcccccccCCCccHHH
Q 037125 40 MLIVSLTPGVQVASILTFSFYSMLNLFCGFT--ITKP--WWIRAYYLCPTSWVLNGILSSQYGDTDKEISIFGKTKTISS 115 (159)
Q Consensus 40 ~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~--i~~~--~~~W~~yisp~~ya~~~l~~nef~~~~~~~~~~~~~~~~~~ 115 (159)
..+.+++.+ .+-.+.-+++.+....+|=. +... ++++++..-|+.|++.++- |.-+
T Consensus 673 ~~lv~~~g~--~g~~i~ivllvlq~~~~~G~~pi~~~~~~~~~l~~~lp~ty~v~~~r--~~~~---------------- 732 (780)
T COG1511 673 YLLVSLFGN--PGKFIAIVLLVLQIAGSGGTFPIQLSPSFFQILHPALPLTYAVNGFR--EVIG---------------- 732 (780)
T ss_pred HHHHHHhCc--chHHHHHHHHHHHHhccccccchhccHHHHHHHHHhccHHHHHHHhH--Hhhc----------------
Confidence 344444443 33444444455555544433 3333 8899999999999955442 1111
Q ss_pred HHHhhcCCcccCccchhhhHHhHHHHHHH
Q 037125 116 FLDDYFGFNYDLLGVVGIVPIIFPIVLAS 144 (159)
Q Consensus 116 ~~~~~~g~~~~~~w~~~~il~~~~~~~~~ 144 (159)
+......|.+..++.++.+++.+
T Consensus 733 ------~~~~~~~~~~~~~~~~~~i~~~~ 755 (780)
T COG1511 733 ------GPIPSNLWSGLLALIGFLILFII 755 (780)
T ss_pred ------cCchHHHhhhHHHHHHHHHHHHH
Confidence 11123466677777777776655
No 28
>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]
Probab=50.15 E-value=1.1e+02 Score=23.18 Aligned_cols=105 Identities=12% Similarity=0.065 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCcc---------chhhhhccchHHHHHHHHHHhhhCC-Ccc
Q 037125 33 LYFNYMGMLIVSLTPGVQVASILTFSFYSMLNLFCGFTITKP---------WWIRAYYLCPTSWVLNGILSSQYGD-TDK 102 (159)
Q Consensus 33 l~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~---------~~~W~~yisp~~ya~~~l~~nef~~-~~~ 102 (159)
....+.+.++++..++...+..++...........+...... .....+..+|.++..+......... ..+
T Consensus 159 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 238 (278)
T COG1277 159 LVLLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAPTLNTLSLLLPLYLLAELAFTILLQSGFSD 238 (278)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhccCHHHHHHHHhhhhcccccccc
Confidence 344567788999999888888777777666655544433211 2245666777777666544333211 000
Q ss_pred cccccCCCccHHHHHHhhcCCcccCccchhhhHHhHHHHHHHHHHHHHH
Q 037125 103 EISIFGKTKTISSFLDDYFGFNYDLLGVVGIVPIIFPIVLASLFAHFIG 151 (159)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~l~ 151 (159)
.. ....-.....|.+..++..+.+.+..+++...+
T Consensus 239 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~ 273 (278)
T COG1277 239 SI--------------LTLNESLLLAWFNILILIIYILIFLSIAYLIFK 273 (278)
T ss_pred cc--------------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 001111235678889999999888888887766
No 29
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=49.11 E-value=35 Score=17.11 Aligned_cols=26 Identities=15% Similarity=-0.096 Sum_probs=19.1
Q ss_pred hhhHHhHHHHHHHHHHHHHHhhhcccC
Q 037125 132 GIVPIIFPIVLASLFAHFIGNKLNFQR 158 (159)
Q Consensus 132 ~~il~~~~~~~~~l~~~~l~~~~~~~k 158 (159)
.....+..+.+..++|+.+. .++.|+
T Consensus 3 ~~vi~G~ilv~lLlgYLvyA-Li~aE~ 28 (29)
T PRK14748 3 AGVITGVLLVFLLLGYLVYA-LINAEA 28 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhCccc
Confidence 34566777778888999888 777654
No 30
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=48.62 E-value=36 Score=17.08 Aligned_cols=26 Identities=15% Similarity=-0.170 Sum_probs=19.4
Q ss_pred hhhhHHhHHHHHHHHHHHHHHhhhccc
Q 037125 131 VGIVPIIFPIVLASLFAHFIGNKLNFQ 157 (159)
Q Consensus 131 ~~~il~~~~~~~~~l~~~~l~~~~~~~ 157 (159)
+..+..+..+++..++|+... .+|-|
T Consensus 2 s~~vi~g~llv~lLl~YLvYA-L~naE 27 (29)
T PRK14750 2 NFSIVCGALLVLLLLGYLVYA-LFNAE 27 (29)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-HcCcc
Confidence 456677777788888998887 76654
No 31
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=41.16 E-value=42 Score=20.57 Aligned_cols=27 Identities=7% Similarity=-0.475 Sum_probs=17.4
Q ss_pred cCCcccCccchhhhHHhHHHHHHHHHHHH
Q 037125 121 FGFNYDLLGVVGIVPIIFPIVLASLFAHF 149 (159)
Q Consensus 121 ~g~~~~~~w~~~~il~~~~~~~~~l~~~~ 149 (159)
++.-....|..++++.+..+ -++.++.
T Consensus 25 ld~~sp~qW~aIGvi~gi~~--~~lt~lt 51 (68)
T PF04971_consen 25 LDQFSPSQWAAIGVIGGIFF--GLLTYLT 51 (68)
T ss_pred HhccCcccchhHHHHHHHHH--HHHHHHh
Confidence 34434567998888877664 4566655
No 32
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.08 E-value=47 Score=22.81 Aligned_cols=24 Identities=8% Similarity=-0.118 Sum_probs=11.7
Q ss_pred ccchhhhHHhHHHHHHHHHHHHHH
Q 037125 128 LGVVGIVPIIFPIVLASLFAHFIG 151 (159)
Q Consensus 128 ~w~~~~il~~~~~~~~~l~~~~l~ 151 (159)
.+..+++++|.+..-.++.|...|
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555443344444444
No 33
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=33.91 E-value=82 Score=16.97 Aligned_cols=25 Identities=12% Similarity=0.072 Sum_probs=15.5
Q ss_pred hhhHHhHHHHHHHHHHHHHHhhhccc
Q 037125 132 GIVPIIFPIVLASLFAHFIGNKLNFQ 157 (159)
Q Consensus 132 ~~il~~~~~~~~~l~~~~l~~~~~~~ 157 (159)
.+++.++.++.....+.+-. ++|++
T Consensus 10 v~V~vg~~iiii~~~~YaCc-ykk~~ 34 (38)
T PF02439_consen 10 VAVVVGMAIIIICMFYYACC-YKKHR 34 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHH-Hcccc
Confidence 45666676666666666666 55544
No 34
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=23.40 E-value=1.8e+02 Score=18.79 Aligned_cols=20 Identities=20% Similarity=-0.024 Sum_probs=8.2
Q ss_pred hhhHHhHHHHHHHHHHHHHH
Q 037125 132 GIVPIIFPIVLASLFAHFIG 151 (159)
Q Consensus 132 ~~il~~~~~~~~~l~~~~l~ 151 (159)
+++..++.++--++-+++-+
T Consensus 37 ~lvI~~iFil~VilwfvCC~ 56 (94)
T PF05393_consen 37 FLVICGIFILLVILWFVCCK 56 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444433333333433
No 35
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=21.92 E-value=89 Score=24.91 Aligned_cols=15 Identities=0% Similarity=-0.048 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhhcccC
Q 037125 143 ASLFAHFIGNKLNFQR 158 (159)
Q Consensus 143 ~~l~~~~l~~~~~~~k 158 (159)
.++-|+.|| |+|++|
T Consensus 272 MvIIYLILR-YRRKKK 286 (299)
T PF02009_consen 272 MVIIYLILR-YRRKKK 286 (299)
T ss_pred HHHHHHHHH-HHHHhh
Confidence 467788888 666443
Done!