Query 037125
Match_columns 159
No_of_seqs 137 out of 1085
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 14:58:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037125.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037125hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ks1_B Epidermal growth factor 22.9 95 0.0033 16.4 3.3 6 146-151 31-36 (44)
2 2jpk_A Bacteriocin lactococcin 9.0 1.3E+02 0.0045 14.8 1.0 17 76-92 3-19 (35)
3 2k21_A Potassium voltage-gated 7.6 4.9E+02 0.017 17.2 3.6 14 129-142 53-66 (138)
4 1v54_M VIIIB, IX, cytochrome C 6.0 4E+02 0.014 14.1 2.5 16 143-159 28-43 (46)
5 2k9p_A Pheromone alpha factor 5.9 5.2E+02 0.018 15.3 3.5 25 134-159 23-47 (80)
6 2lkg_A Acetylcholine receptor; 5.6 4E+02 0.014 17.5 2.5 26 49-74 51-76 (140)
7 1vry_A Glycine receptor alpha- 5.2 5.7E+02 0.019 15.0 3.3 13 131-143 36-48 (76)
8 2lx0_A Membrane fusion protein 4.3 4.3E+02 0.015 12.3 3.4 24 127-151 4-27 (32)
9 3m1c_B GL, envelope glycoprote 4.1 3.6E+02 0.012 19.1 1.4 33 67-100 48-91 (204)
10 2rdd_B UPF0092 membrane protei 4.0 4.9E+02 0.017 12.7 2.4 17 7-23 4-20 (37)
No 1
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=22.89 E-value=95 Score=16.42 Aligned_cols=6 Identities=17% Similarity=0.451 Sum_probs=2.7
Q ss_pred HHHHHH
Q 037125 146 FAHFIG 151 (159)
Q Consensus 146 ~~~~l~ 151 (159)
.++.+|
T Consensus 31 ~~~~~R 36 (44)
T 2ks1_B 31 IGLFMR 36 (44)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 344445
No 2
>2jpk_A Bacteriocin lactococcin-G subunit beta; peptide, antimicrobial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpm_A
Probab=8.97 E-value=1.3e+02 Score=14.75 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=10.6
Q ss_pred hhhhhccchHHHHHHHH
Q 037125 76 WIRAYYLCPTSWVLNGI 92 (159)
Q Consensus 76 ~~W~~yisp~~ya~~~l 92 (159)
|.|+.|+.|-.=-+.++
T Consensus 3 ~~wl~w~~pay~fi~g~ 19 (35)
T 2jpk_A 3 WGWLAWVDPAYEFIKGF 19 (35)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHH
Confidence 56888888864333333
No 3
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=7.55 E-value=4.9e+02 Score=17.17 Aligned_cols=14 Identities=7% Similarity=-0.007 Sum_probs=6.9
Q ss_pred cchhhhHHhHHHHH
Q 037125 129 GVVGIVPIIFPIVL 142 (159)
Q Consensus 129 w~~~~il~~~~~~~ 142 (159)
...++++.+|.-++
T Consensus 53 ylYIL~vmgffgff 66 (138)
T 2k21_A 53 ALYVLMVLGFFGFF 66 (138)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHH
Confidence 44455555555444
No 4
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=6.00 E-value=4e+02 Score=14.12 Aligned_cols=16 Identities=13% Similarity=-0.074 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhhcccCC
Q 037125 143 ASLFAHFIGNKLNFQRS 159 (159)
Q Consensus 143 ~~l~~~~l~~~~~~~kr 159 (159)
.-.+++.-. ..+++||
T Consensus 28 ~PagWVLsh-L~~YKk~ 43 (46)
T 1v54_M 28 LPAGWVLYH-LDNYKKS 43 (46)
T ss_dssp HHHHHHHHT-HHHHHTC
T ss_pred hhHHHHHHH-HHHhccc
Confidence 333555543 4444443
No 5
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=5.91 E-value=5.2e+02 Score=15.33 Aligned_cols=25 Identities=12% Similarity=-0.122 Sum_probs=10.7
Q ss_pred hHHhHHHHHHHHHHHHHHhhhcccCC
Q 037125 134 VPIIFPIVLASLFAHFIGNKLNFQRS 159 (159)
Q Consensus 134 il~~~~~~~~~l~~~~l~~~~~~~kr 159 (159)
+..|--++--++..+.+. .+.++||
T Consensus 23 I~~G~~iGAs~llliil~-lltkkrr 47 (80)
T 2k9p_A 23 ILFGVRSGAAALTLIVVW-ITSRSRK 47 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHTCCSC
T ss_pred HHHHHHHHHHHHHHHHHH-HHhcccc
Confidence 333333333444444555 4444443
No 6
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A
Probab=5.60 E-value=4e+02 Score=17.50 Aligned_cols=26 Identities=8% Similarity=-0.208 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCcc
Q 037125 49 VQVASILTFSFYSMLNLFCGFTITKP 74 (159)
Q Consensus 49 ~~~a~~~~~~~~~~~~lf~Gf~i~~~ 74 (159)
.-..+.+.|......+...||.+|+|
T Consensus 51 ~y~~~liiP~~li~~Ls~~~F~Lp~d 76 (140)
T 2lkg_A 51 YFVVNVIEPCKKFSELTGLVFYLPTD 76 (140)
T ss_dssp HHHHHHHHHHHHHHTHHHHSSSSCCS
T ss_pred eeeehhhhHHHHHHHHHhheeEcCCC
Confidence 34577788888888888888988886
No 7
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=5.21 E-value=5.7e+02 Score=14.98 Aligned_cols=13 Identities=8% Similarity=0.056 Sum_probs=5.4
Q ss_pred hhhhHHhHHHHHH
Q 037125 131 VGIVPIIFPIVLA 143 (159)
Q Consensus 131 ~~~il~~~~~~~~ 143 (159)
|+.+..++..+|.
T Consensus 36 Dvw~~~C~~FVF~ 48 (76)
T 1vry_A 36 DIWLAVCLLFVFS 48 (76)
T ss_dssp HHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 8
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=4.25 E-value=4.3e+02 Score=12.34 Aligned_cols=24 Identities=4% Similarity=-0.178 Sum_probs=11.9
Q ss_pred CccchhhhHHhHHHHHHHHHHHHHH
Q 037125 127 LLGVVGIVPIIFPIVLASLFAHFIG 151 (159)
Q Consensus 127 ~~w~~~~il~~~~~~~~~l~~~~l~ 151 (159)
.+|..+.-+++..- |...++...+
T Consensus 4 tiweviaglvallt-flafgfwlfk 27 (32)
T 2lx0_A 4 TIWEVIAGLVALLT-FLAFGFWLFK 27 (32)
T ss_dssp SSHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 46665555544433 3344444455
No 9
>3m1c_B GL, envelope glycoprotein L; glycoprotein H, GH/GL, envelope protein, HER simplex virus, disulfide bond, HOST cell MEMB HOST endosome; HET: NAG XYL; 3.00A {Human herpesvirus 2}
Probab=4.13 E-value=3.6e+02 Score=19.10 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=0.0
Q ss_pred cccccCcc--------chh---hhhccchHHHHHHHHHHhhhCCC
Q 037125 67 CGFTITKP--------WWI---RAYYLCPTSWVLNGILSSQYGDT 100 (159)
Q Consensus 67 ~Gf~i~~~--------~~~---W~~yisp~~ya~~~l~~nef~~~ 100 (159)
+|++|+.. |.+ =.||+||+. +..|++..-.++.
T Consensus 48 sGIfik~hCp~PE~ILW~~~~q~AyWVNPf~-~~~Gl~eDv~~s~ 91 (204)
T 3m1c_B 48 DGIFLRYHCPGLDTFLWDRHAQRAYLVNPFL-FAAGFLEDLSHSV 91 (204)
T ss_dssp CEEEEETTSTTCCEEEEETTTTEEEEECHHH-HHHHHHHHHHSCC
T ss_pred cceEEeccCCCCceEEEecCCCeeeEeCHHH-HHHHHHHHHhhcc
No 10
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=4.04 E-value=4.9e+02 Score=12.67 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhh
Q 037125 7 YLFIQAVIYVIITYPMI 23 (159)
Q Consensus 7 ~~~i~~~if~~i~Y~~~ 23 (159)
..++.-++..++.||+.
T Consensus 4 ~~~l~~v~~~~ifYFl~ 20 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMI 20 (37)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Done!