Query 037125
Match_columns 159
No_of_seqs 137 out of 1085
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 14:58:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037125.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037125hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1guua_ a.4.1.3 (A:) c-Myb, DN 5.4 61 0.0044 15.9 -0.1 10 75-84 40-49 (50)
2 d1gvda_ a.4.1.3 (A:) c-Myb, DN 4.9 82 0.006 15.6 0.2 10 75-84 42-51 (52)
3 d3dtub2 f.17.2.1 (B:30-129) Ba 4.8 3E+02 0.022 15.1 3.2 21 134-155 36-56 (100)
4 d1oedc_ f.36.1.1 (C:) Acetylch 4.1 1.7E+02 0.013 18.9 1.6 8 134-141 233-240 (260)
5 d1eysh2 f.23.10.1 (H:7-43) Pho 3.7 2.7E+02 0.02 12.8 2.9 12 134-145 9-20 (37)
6 d3ehbb2 f.17.2.1 (B:1-107) Bac 3.6 4.1E+02 0.03 14.8 3.4 11 141-151 49-59 (107)
7 d1bhia_ g.37.1.1 (A:) Transact 3.4 2.2E+02 0.016 13.3 1.1 13 99-111 4-16 (38)
8 d1fftb2 f.17.2.1 (B:27-117) Cy 3.4 94 0.0069 17.4 -0.4 16 139-155 30-45 (91)
9 d1tafb_ a.22.1.3 (B:) TAF(II)6 3.3 1.6E+02 0.011 15.9 0.5 38 119-159 17-56 (70)
10 d1oedb_ f.36.1.1 (B:) Acetylch 3.2 2.4E+02 0.017 18.1 1.6 28 47-74 1-28 (250)
No 1
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.40 E-value=61 Score=15.92 Aligned_cols=10 Identities=20% Similarity=-0.034 Sum_probs=6.5
Q ss_pred chhhhhccch
Q 037125 75 WWIRAYYLCP 84 (159)
Q Consensus 75 ~~~W~~yisp 84 (159)
--||-+|++|
T Consensus 40 r~Rw~~~L~P 49 (50)
T d1guua_ 40 QHRWQKVLNP 49 (50)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHhhCCC
Confidence 4467777776
No 2
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.85 E-value=82 Score=15.61 Aligned_cols=10 Identities=20% Similarity=-0.146 Sum_probs=6.4
Q ss_pred chhhhhccch
Q 037125 75 WWIRAYYLCP 84 (159)
Q Consensus 75 ~~~W~~yisp 84 (159)
--||-+|++|
T Consensus 42 ~~Rw~~~L~P 51 (52)
T d1gvda_ 42 RERWHNHLNP 51 (52)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHhhCCC
Confidence 4467777766
No 3
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.84 E-value=3e+02 Score=15.15 Aligned_cols=21 Identities=10% Similarity=-0.054 Sum_probs=10.4
Q ss_pred hHHhHHHHHHHHHHHHHHhhhc
Q 037125 134 VPIIFPIVLASLFAHFIGNKLN 155 (159)
Q Consensus 134 il~~~~~~~~~l~~~~l~~~~~ 155 (159)
+...+.++.-.+.+...| +++
T Consensus 36 ~~~I~~~V~~~l~~~~~~-~r~ 56 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWR-FHE 56 (100)
T ss_dssp HHHHHHHHHHHHHHHHHH-HBT
T ss_pred HHHHHHHHHHHHHHHhhh-hhc
Confidence 333334444555666666 443
No 4
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.13 E-value=1.7e+02 Score=18.91 Aligned_cols=8 Identities=25% Similarity=0.148 Sum_probs=3.4
Q ss_pred hHHhHHHH
Q 037125 134 VPIIFPIV 141 (159)
Q Consensus 134 il~~~~~~ 141 (159)
.++.|.++
T Consensus 233 fl~lF~i~ 240 (260)
T d1oedc_ 233 SMFIITPV 240 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 5
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=3.68 E-value=2.7e+02 Score=12.82 Aligned_cols=12 Identities=17% Similarity=0.108 Sum_probs=5.5
Q ss_pred hHHhHHHHHHHH
Q 037125 134 VPIIFPIVLASL 145 (159)
Q Consensus 134 il~~~~~~~~~l 145 (159)
.+.++++.|..+
T Consensus 9 ~ly~Fw~FFagL 20 (37)
T d1eysh2 9 TIWAFWLFFFGL 20 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444555544333
No 6
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=3.59 E-value=4.1e+02 Score=14.81 Aligned_cols=11 Identities=18% Similarity=0.172 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 037125 141 VLASLFAHFIG 151 (159)
Q Consensus 141 ~~~~l~~~~l~ 151 (159)
+.-.+.+...|
T Consensus 49 V~~~~~~~~~~ 59 (107)
T d3ehbb2 49 VCLLLLICIVR 59 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 33455555555
No 7
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.44 E-value=2.2e+02 Score=13.29 Aligned_cols=13 Identities=15% Similarity=-0.048 Sum_probs=7.8
Q ss_pred CCcccccccCCCc
Q 037125 99 DTDKEISIFGKTK 111 (159)
Q Consensus 99 ~~~~~~~~~~~~~ 111 (159)
+.++.|..|++++
T Consensus 4 dkPF~C~~pGC~q 16 (38)
T d1bhia_ 4 DKPFLCTAPGCGQ 16 (38)
T ss_dssp CCCEECCCTTTCC
T ss_pred CCceecCCCCccc
Confidence 3446666677665
No 8
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=3.36 E-value=94 Score=17.36 Aligned_cols=16 Identities=0% Similarity=-0.317 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhhhc
Q 037125 139 PIVLASLFAHFIGNKLN 155 (159)
Q Consensus 139 ~~~~~~l~~~~l~~~~~ 155 (159)
.++.-.+.+...| |++
T Consensus 30 v~V~~~~~~~~~r-yR~ 45 (91)
T d1fftb2 30 IPAILMAVGFAWK-YRA 45 (91)
T ss_dssp THHHHHHHTTTTT-TTT
T ss_pred HHHHHHHHhhhee-eec
Confidence 3444555666666 543
No 9
>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=3.30 E-value=1.6e+02 Score=15.88 Aligned_cols=38 Identities=8% Similarity=-0.034 Sum_probs=22.0
Q ss_pred hhcCCcccCccchhhhHHhHHHHHHHHHHHH--HHhhhcccCC
Q 037125 119 DYFGFNYDLLGVVGIVPIIFPIVLASLFAHF--IGNKLNFQRS 159 (159)
Q Consensus 119 ~~~g~~~~~~w~~~~il~~~~~~~~~l~~~~--l~~~~~~~kr 159 (159)
+..|++. .--+..-.++-=+-||+--.+- .| +.||-||
T Consensus 17 eS~Gi~~--l~de~a~~LA~DveYRl~eiiQeA~K-FMrhskR 56 (70)
T d1tafb_ 17 ESIGVGS--LSDDAAKELAEDVSIKLKRIVQDAAK-FMNHAKR 56 (70)
T ss_dssp HHTTCCC--BCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTC
T ss_pred HHcCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcc
Confidence 4556632 2234555566666677665553 66 7777766
No 10
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.20 E-value=2.4e+02 Score=18.11 Aligned_cols=28 Identities=7% Similarity=0.004 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhcccccCcc
Q 037125 47 PGVQVASILTFSFYSMLNLFCGFTITKP 74 (159)
Q Consensus 47 ~~~~~a~~~~~~~~~~~~lf~Gf~i~~~ 74 (159)
|-+-.-+.+.|..+...+..-||.+|++
T Consensus 1 pl~y~~~~~~P~~~i~~l~~~~f~~p~~ 28 (250)
T d1oedb_ 1 PLFYIVYTIIPCILISILAILVFYLPPD 28 (250)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEeHHHHHHHHHHHHHHHheecCC
Done!