Your job contains 1 sequence.
>037126
KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS
SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV
GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDAT
YVNNRNFFPKKL
The BLAST search returned 10 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 037126
(192 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 616 3.9e-60 1
TAIR|locus:2012211 - symbol:RBP47A "RNA-binding protein 4... 603 9.3e-59 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 572 1.8e-55 1
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 535 1.5e-51 1
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ... 534 1.9e-51 1
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 396 8.0e-37 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 393 1.7e-36 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 390 3.5e-36 1
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 386 9.2e-36 1
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 376 1.1e-34 1
UNIPROTKB|G4NFS0 - symbol:MGG_08741 "tRNA selenocysteine-... 206 6.1e-32 2
POMBASE|SPBC23E6.01c - symbol:SPBC23E6.01c "mRNA processi... 329 1.0e-29 1
ASPGD|ASPL0000035772 - symbol:rrmA species:162425 "Emeric... 327 1.6e-29 1
POMBASE|SPAC17A2.09c - symbol:csx1 "RNA-binding protein C... 321 4.2e-28 1
CGD|CAL0004999 - symbol:orf19.6790 species:5476 "Candida ... 202 1.0e-25 2
SGD|S000000416 - symbol:NGR1 "RNA binding protein that ne... 176 8.8e-23 2
SGD|S000001128 - symbol:NAM8 "RNA binding protein, compon... 186 7.9e-22 2
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind... 203 9.4e-16 1
TAIR|locus:2014340 - symbol:UBP1A "oligouridylate-binding... 192 1.7e-14 1
TAIR|locus:2018794 - symbol:UBP1B "oligouridylate binding... 188 4.3e-14 1
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 181 2.6e-13 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 179 3.9e-13 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 175 6.6e-13 1
UNIPROTKB|Q49AS9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 167 1.5e-12 1
ZFIN|ZDB-GENE-040426-1547 - symbol:tial1 "TIA1 cytotoxic ... 170 3.4e-12 1
ZFIN|ZDB-GENE-050522-502 - symbol:trnau1ap "tRNA selenocy... 137 5.4e-12 2
UNIPROTKB|D4A964 - symbol:Tial1 "Protein Tial1" species:1... 167 6.3e-12 1
UNIPROTKB|F1LQ36 - symbol:Tial1 "Protein Tial1" species:1... 167 6.4e-12 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 167 6.6e-12 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 167 6.8e-12 1
UNIPROTKB|F1NY49 - symbol:374274 "Uncharacterized protein... 167 7.2e-12 1
UNIPROTKB|F1NS94 - symbol:374274 "Uncharacterized protein... 167 7.2e-12 1
UNIPROTKB|E2RA41 - symbol:TIAL1 "Uncharacterized protein"... 167 7.3e-12 1
UNIPROTKB|F2Z5F9 - symbol:LOC100736782 "Uncharacterized p... 167 7.3e-12 1
MGI|MGI:107913 - symbol:Tial1 "Tia1 cytotoxic granule-ass... 167 7.3e-12 1
RGD|1595845 - symbol:Tial1 "Tia1 cytotoxic granule-associ... 167 7.3e-12 1
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 166 9.1e-12 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 164 1.4e-11 1
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 164 1.5e-11 1
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 162 2.3e-11 1
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 162 2.5e-11 1
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 162 2.5e-11 1
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 162 2.5e-11 1
WB|WBGene00012904 - symbol:tiar-2 species:6239 "Caenorhab... 163 2.5e-11 1
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 162 2.6e-11 1
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 158 3.0e-11 1
WB|WBGene00007396 - symbol:tiar-3 species:6239 "Caenorhab... 161 4.4e-11 1
FB|FBgn0085383 - symbol:CG34354 species:7227 "Drosophila ... 158 1.2e-10 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 157 1.3e-10 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 155 1.6e-10 1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 155 1.6e-10 1
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 155 2.3e-10 1
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 153 2.4e-10 1
CGD|CAL0001768 - symbol:orf19.1876 species:5476 "Candida ... 154 2.6e-10 1
UNIPROTKB|E7ETJ9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 112 2.9e-10 2
FB|FBgn0085391 - symbol:CG34362 species:7227 "Drosophila ... 155 4.9e-10 1
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 150 5.0e-10 1
ZFIN|ZDB-GENE-980526-76 - symbol:elavl3 "ELAV (embryonic ... 109 5.5e-10 2
DICTYBASE|DDB_G0292472 - symbol:DDB_G0292472 species:4468... 113 6.2e-10 3
UNIPROTKB|F1SF34 - symbol:F1SF34 "Uncharacterized protein... 144 6.6e-10 1
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 150 9.0e-10 1
UNIPROTKB|F1PVV1 - symbol:ELAVL3 "Uncharacterized protein... 105 9.7e-10 2
UNIPROTKB|Q14576 - symbol:ELAVL3 "ELAV-like protein 3" sp... 105 9.7e-10 2
UNIPROTKB|F1SA16 - symbol:ELAVL3 "Uncharacterized protein... 105 9.7e-10 2
MGI|MGI:109157 - symbol:Elavl3 "ELAV (embryonic lethal, a... 105 9.7e-10 2
RGD|628892 - symbol:Elavl3 "ELAV (embryonic lethal, abnor... 105 9.7e-10 2
UNIPROTKB|F1N4V6 - symbol:ELAVL3 "Uncharacterized protein... 105 9.8e-10 2
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 137 1.4e-09 2
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 133 2.3e-09 2
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 141 4.5e-09 1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 144 5.3e-09 1
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 131 5.3e-09 2
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 141 6.0e-09 1
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 142 8.6e-09 1
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 141 1.0e-08 1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 141 1.1e-08 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 141 1.1e-08 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 141 1.1e-08 1
FB|FBgn0010263 - symbol:Rbp9 "RNA-binding protein 9" spec... 112 1.1e-08 2
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 141 1.2e-08 1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 102 1.4e-08 2
TAIR|locus:2025077 - symbol:MAC5A "MOS4-associated comple... 140 1.9e-08 1
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 109 2.0e-08 2
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 102 2.2e-08 2
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 124 2.2e-08 2
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 140 2.3e-08 1
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein... 102 2.5e-08 2
UNIPROTKB|J9PAL3 - symbol:ELAVL4 "Uncharacterized protein... 102 2.5e-08 2
UNIPROTKB|B1APY9 - symbol:ELAVL4 "cDNA FLJ50619, highly s... 102 2.6e-08 2
UNIPROTKB|F1NLH0 - symbol:ELAVL4 "Uncharacterized protein... 102 2.6e-08 2
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 136 2.7e-08 2
RGD|1560027 - symbol:Elavl4 "ELAV (embryonic lethal, abno... 102 2.7e-08 2
UNIPROTKB|O09032 - symbol:Elavl4 "ELAV-like protein 4" sp... 102 2.7e-08 2
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 140 2.7e-08 1
UNIPROTKB|P26378 - symbol:ELAVL4 "ELAV-like protein 4" sp... 102 2.8e-08 2
UNIPROTKB|F1LRX3 - symbol:Elavl4 "ELAV-like protein 4" sp... 102 2.8e-08 2
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 140 2.9e-08 1
UNIPROTKB|F1P856 - symbol:ELAVL4 "Uncharacterized protein... 102 2.9e-08 2
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 140 2.9e-08 1
UNIPROTKB|F1LRL1 - symbol:Elavl4 "ELAV-like protein 4" sp... 102 2.9e-08 2
WARNING: Descriptions of 459 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
Identities = 120/170 (70%), Positives = 139/170 (81%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+IDSNT R+KGYGFVRFGDENERSRA+ EMNG YCS+R M + +ATPK+A QQQ S
Sbjct: 233 KVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHS 292
Query: 61 SQALVLAGGPASNGTRVQGS--DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI 118
SQA++LAGG SNG+ GS DGES NATIFVG +D DV D+DLR+PFS FGE++SVKI
Sbjct: 293 SQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKI 352
Query: 119 PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWRGD 168
PVGKGCGFVQFA+RK AE A++ L GT IGK TVRLS G +P NKQWRGD
Sbjct: 353 PVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQWRGD 401
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 118/171 (69%), Positives = 137/171 (80%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+IDSNT R+KGYGFVRFGDENERSRAM EMNG +CSSR M + +ATPK+A+ Y QQ
Sbjct: 244 KVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNG 303
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
SQAL LAGG NG+ SDGESNN+TIFVG LD+DV+++DL +PFS FGE++SVKIPV
Sbjct: 304 SQALTLAGGHGGNGSM---SDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV 360
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHIN 171
GKGCGFVQFANR+ AE A+ L GT IGK TVRLS G +P NKQWR D N
Sbjct: 361 GKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDSGN 410
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 111/170 (65%), Positives = 136/170 (80%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV++D+NT +KGYGFVRFGDE+ERSRAM EMNGVYCSSR M I VATPKK S ++Q S
Sbjct: 208 KVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHEQY-S 266
Query: 61 SQALVLAGGPASNGTRVQGS--DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI 118
SQA++L+GG ASNG GS DG+S+N TIFVG LDS+V+D++LR+ F+ FGE++SVKI
Sbjct: 267 SQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKI 326
Query: 119 PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWRGD 168
P GKGCGFVQF++R A+ A+QKL G IGKQ VRLS G +P NKQ R D
Sbjct: 327 PAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTD 376
Score = 112 (44.5 bits), Expect = 0.00033, P = 0.00033
Identities = 41/129 (31%), Positives = 62/129 (48%)
Query: 75 TRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGKG--CGFVQ 128
T++Q S +N TI++G L + + L FS GE++SVKI G+ GFV+
Sbjct: 74 TQIQSSS--EDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVE 131
Query: 129 FANRKDAEVALQKLQGTAIG--KQTVRLS-SGHNPGNKQWR-GDHINLIA--LAQDATYV 182
F AE LQ GT + +Q RL+ +G + G K+ G ++ LA D T
Sbjct: 132 FNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDT 191
Query: 183 NNRNFFPKK 191
R+ F +
Sbjct: 192 MLRDTFASR 200
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 109/171 (63%), Positives = 129/171 (75%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV++D+NT R+KGYGFVRFGDENER++AM EMNGV CSSR M I ATP+K +GYQQQ
Sbjct: 228 KVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQ-- 285
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
GG NGT + +G+ N TIFVG LDS V+D+DL++PF+ FGEI+SVKIPV
Sbjct: 286 -------GGYMPNGTLTR-PEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV 337
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHIN 171
GKGCGFVQF NR +AE AL+KL GT IGKQTVRLS G NP NKQ R + N
Sbjct: 338 GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGN 388
Score = 93 (37.8 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 71 ASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSH-FGEILSVKIPV------GKG 123
AS T + + + +IFVG L DVSD L E FS + + + K+ + KG
Sbjct: 181 ASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKG 240
Query: 124 CGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154
GFV+F + + A+ ++ G + +R+
Sbjct: 241 YGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
Score = 65 (27.9 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNG 34
KVI + N ++GYGFV F + + + E NG
Sbjct: 133 KVIRNKNNGLSEGYGFVEFESHDVADKVLREFNG 166
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 109/171 (63%), Positives = 130/171 (76%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV++D+NT R+KGYGFVRFGDENER++AM EMNGV CSSR M I ATP+K +GYQQQ
Sbjct: 230 KVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQ-- 287
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
GG +G + S+G++ N TIFVG LDS V+D+DL++PFS FGEI+SVKIPV
Sbjct: 288 -------GGYMPSGAFTR-SEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPV 339
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHIN 171
GKGCGFVQF NR +AE AL+KL GT IGKQTVRLS G NP NKQ R + N
Sbjct: 340 GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGN 390
Score = 90 (36.7 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 71 ASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSH-FGEILSVKIPV------GKG 123
AS T + + + +IFVG L DVSD L E FS + + + K+ + KG
Sbjct: 183 ASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKG 242
Query: 124 CGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154
GFV+F + + A+ ++ G + +R+
Sbjct: 243 YGFVRFGDENERTKAMTEMNGVKCSSRAMRI 273
Score = 61 (26.5 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNG 34
KVI + + ++GYGFV F + + + E NG
Sbjct: 135 KVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNG 168
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 82/169 (48%), Positives = 113/169 (66%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D +T R+KGYGFV+F +E+ER+RAM EMNG+YCS+RPM I ATPKK G QQQ
Sbjct: 147 KVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYV 206
Query: 61 SQALVLAGGPASNGTRVQG--SDGESNNA--TIFVGALDSDVSDKDLREPFSHFGEILSV 116
++A+ P++ VQ + ES+ TI V LD +V++++L++ FS GE++ V
Sbjct: 207 TKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYV 266
Query: 117 KIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQW 165
KIP KG G+VQF R AE A+Q++QG IG+Q VR+S NPG W
Sbjct: 267 KIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQDGW 315
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 89/170 (52%), Positives = 107/170 (62%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D T R+KGYGFVRF DE+E+ RAM EMNG YCSSRPM A KK Q
Sbjct: 204 KVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQ---- 259
Query: 61 SQALVLAGGPASNGTRVQGSDGESN--NATIFVGALDSDVSDKDLREPFSHFGEILSVKI 118
PAS QG+ GES+ N TIFVGA+D V++ DL+ F FGE++ VKI
Sbjct: 260 ---------PASY-QNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI 309
Query: 119 PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWRGD 168
P GK CGFVQ+ANR AE AL L GT +G Q++RLS G +P NKQ + D
Sbjct: 310 PAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQPD 359
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 85/171 (49%), Positives = 105/171 (61%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV++D T R+KGYGFVRF DENE+ RAM EMNG YCS+RPM I A K A Q
Sbjct: 185 KVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQP--- 241
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
A+ N D + NN TIFVG LD++V+D +L+ F FGE+L VKIP
Sbjct: 242 --AMY------QNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPP 293
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK----QWRG 167
GK CGFVQ+AN+ AE AL L GT +G Q++RLS G +P + QW G
Sbjct: 294 GKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQAQWNG 344
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 88/169 (52%), Positives = 107/169 (63%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA-SGYQQQC 59
KV+ID T RTKGYGFVRF DE+E+ RAM EMNGV CS+RPM I A KK +G +
Sbjct: 186 KVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSY 245
Query: 60 SSQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIP 119
S A AG +D + NN T+FVG LD+ V+D L+ FS +GEI+ VKIP
Sbjct: 246 QSSA---AGVT---------TDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIP 293
Query: 120 VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWRGD 168
GK CGFVQF+ + AE AL+ L G +G TVRLS G +P NKQ GD
Sbjct: 294 AGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQ-SGD 341
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 82/164 (50%), Positives = 104/164 (63%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D T R+KGYGFV+F DE+E+ RAM EMNGV CS+RPM I A KK G Q+ +
Sbjct: 207 KVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKAT 266
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
Q N QG + + NN TIFVG LD V+++ LR+ FS +GE++ VKI
Sbjct: 267 YQ----------NPQATQG-ESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVA 315
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164
GK CGFVQF R AE AL L GT +G Q++RLS G +P +KQ
Sbjct: 316 GKRCGFVQFGTRASAEQALSSLNGTQLGGQSIRLSWGRSPSSKQ 359
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 206 (77.6 bits), Expect = 6.1e-32, Sum P(2) = 6.1e-32
Identities = 41/80 (51%), Positives = 53/80 (66%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKL 142
+ NN T+FVG L V++ +LR F FG+I VKIP GKGCGFVQF +R AE+A+ ++
Sbjct: 280 DPNNTTVFVGGLSGYVTEDELRSFFQGFGDITYVKIPPGKGCGFVQFVHRHAAEMAINQM 339
Query: 143 QGTAIGKQTVRLSSGHNPGN 162
QG IG VRLS G + N
Sbjct: 340 QGYPIGNSRVRLSWGRSQNN 359
Score = 171 (65.3 bits), Expect = 6.1e-32, Sum P(2) = 6.1e-32
Identities = 31/57 (54%), Positives = 44/57 (77%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQ 57
K++ D+ T +++GYGFVRF DE+++ RA++EM GVYC +RPM I ATPK S +QQ
Sbjct: 171 KIMTDAMTGQSRGYGFVRFTDESDQQRALVEMQGVYCGNRPMRISTATPKTRS-HQQ 226
Score = 40 (19.1 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNG 34
KVI D + GY FV F ++A+ +NG
Sbjct: 78 KVIRDRQSGNA-GYCFVEFPSSEAATKAL-GLNG 109
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 65/159 (40%), Positives = 98/159 (61%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
K++ D T+ ++GYGFVRF DEN++ A+ EM G C RP+ + +ATPK + +
Sbjct: 217 KIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVN 276
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + + + ++ N+T+FVG L VS+++L+ F +FGEI+ VKIP
Sbjct: 277 VVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPP 336
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHN 159
GKGCGFVQF NR+ AE+A+ +LQG +G +RLS G N
Sbjct: 337 GKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375
Score = 106 (42.4 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 33/113 (29%), Positives = 58/113 (51%)
Query: 71 ASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPF-SHFGEILSVKI---P---VGKG 123
AS G + S +++ +IFVG L +V++ D+ F S + S KI P V +G
Sbjct: 170 ASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRG 229
Query: 124 CGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALA 176
GFV+F + D + AL ++QG G + +R+ P +K +N++ ++
Sbjct: 230 YGFVRFTDENDQKSALAEMQGQICGDRPIRVGLA-TPKSKAHVFSPVNVVPVS 281
Score = 51 (23.0 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMN 33
K+I + T GY FV F +E S AM MN
Sbjct: 123 KLIRNRYTGMNAGYCFVEFASPHEASSAM-SMN 154
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 74/171 (43%), Positives = 95/171 (55%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS------G 54
K++ D + ++GYGFVRF DEN++ RA+ EM GVYC +RPM I ATPK G
Sbjct: 191 KIMTDPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRISTATPKNKGPGVVPGG 250
Query: 55 YQQQCSSQALVLAGGPASN--GT-RVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFG 111
+ G P G + + NN T+FVG L V++ +LR F FG
Sbjct: 251 MGMPGPAGMYPPMGAPPMGFYGAPQPMNQFTDPNNTTVFVGGLSGYVTEDELRSFFQGFG 310
Query: 112 EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGN 162
EI VKIP GKGCGFVQF R AE+A+ ++QG IG VRLS G + N
Sbjct: 311 EITYVKIPPGKGCGFVQFVQRHAAEMAINQMQGYPIGNSRVRLSWGRSQNN 361
>POMBASE|SPAC17A2.09c [details] [associations]
symbol:csx1 "RNA-binding protein Csx1" species:4896
"Schizosaccharomyces pombe" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:2000815 "regulation of mRNA
stability involved in response to oxidative stress" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC17A2.09c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000932 eggNOG:COG0724 GO:GO:2000815
EMBL:D83417 EMBL:D83418 PIR:T37810 RefSeq:NP_594243.1
ProteinModelPortal:O13759 IntAct:O13759 MINT:MINT-4667695
STRING:O13759 EnsemblFungi:SPAC17A2.09c.1 GeneID:2542151
KEGG:spo:SPAC17A2.09c OrthoDB:EOG44BFB8 NextBio:20803223
GO:GO:0070935 Uniprot:O13759
Length = 632
Score = 321 (118.1 bits), Expect = 4.2e-28, P = 4.2e-28
Identities = 67/162 (41%), Positives = 95/162 (58%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
K+I+D T ++ YGFVRF E E+ A++ M G C RP+ I VA+PK + +
Sbjct: 213 KIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASI---AA 269
Query: 61 SQALVLAGGPASNGTRVQGSD---GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVK 117
AL + P S R D + N T+FVG L S++S+KDL+ F FG IL++K
Sbjct: 270 DSALGIV--PTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIK 327
Query: 118 IPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHN 159
IP GKGCGFVQ++ + AE A+ +QG +G +RL+ GHN
Sbjct: 328 IPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369
>CGD|CAL0004999 [details] [associations]
symbol:orf19.6790 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0061158 "3'-UTR-mediated mRNA destabilization"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004999 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719769.1 RefSeq:XP_719886.1 ProteinModelPortal:Q5ADQ1
GeneID:3638443 GeneID:3638606 KEGG:cal:CaO19.14082
KEGG:cal:CaO19.6790 Uniprot:Q5ADQ1
Length = 887
Score = 202 (76.2 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 45/97 (46%), Positives = 61/97 (62%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKL 142
+ NN T+FVG L SDVS+ L F FG I VKIP GK CGFV+++NR++AE A+ +
Sbjct: 517 DPNNTTVFVGGLSSDVSEPTLHTLFKPFGLIQQVKIPPGKNCGFVKYSNREEAEEAIAAM 576
Query: 143 QGTAIGKQTVRLSSGH-NPGNKQWRGDHINLIA-LAQ 177
QG IG VRLS G + NK+++ +A +AQ
Sbjct: 577 QGFVIGGNRVRLSWGRVSVSNKKYQQQQQQQVAQVAQ 613
Score = 128 (50.1 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
Identities = 22/53 (41%), Positives = 39/53 (73%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
+V+ D + +++ +GFVRF +E+ER RA+IEMNG + + RP+ + +ATP+ +
Sbjct: 286 RVMTDPISGKSRCFGFVRFTEESERQRALIEMNGAWFAGRPLRVALATPRNVA 338
>SGD|S000000416 [details] [associations]
symbol:NGR1 "RNA binding protein that negatively regulates
growth rate" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0061158 "3'-UTR-mediated
mRNA destabilization" evidence=IMP;IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000000416 GO:GO:0048471 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006936 GO:GO:0000932
GO:GO:0007005 GO:GO:0010494 eggNOG:COG0724 OrthoDB:EOG44BFB8
RefSeq:NP_009771.3 GeneID:852513 KEGG:sce:YBR212W
GeneTree:ENSGT00510000047100 EMBL:Z14097 EMBL:Z36081 PIR:S46086
RefSeq:NP_009775.3 ProteinModelPortal:P32831 SMR:P32831
DIP:DIP-5160N IntAct:P32831 MINT:MINT-513097 STRING:P32831
PaxDb:P32831 PeptideAtlas:P32831 EnsemblFungi:YBR212W GeneID:852517
KEGG:sce:YBR216C CYGD:YBR212w OMA:RFANETE NextBio:971535
Genevestigator:P32831 GermOnline:YBR212W GO:GO:0061158
Uniprot:P32831
Length = 672
Score = 176 (67.0 bits), Expect = 8.8e-23, Sum P(2) = 8.8e-23
Identities = 36/75 (48%), Positives = 47/75 (62%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKL 142
+ N T+FVG L ++ LR F FG IL+V+IP GK CGFV+F R DAE ++Q L
Sbjct: 356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGL 415
Query: 143 QGTAIGKQTVRLSSG 157
QG +G +RLS G
Sbjct: 416 QGFIVGGSPIRLSWG 430
Score = 123 (48.4 bits), Expect = 8.8e-23, Sum P(2) = 8.8e-23
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++ +GFVRFGDE+ER RA+IEM+G + R + + ATP+ Q Q
Sbjct: 223 RVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATPRNNMMLQLQEQ 282
Query: 61 SQ 62
Q
Sbjct: 283 QQ 284
>SGD|S000001128 [details] [associations]
symbol:NAM8 "RNA binding protein, component of the U1 snRNP
protein" species:4932 "Saccharomyces cerevisiae" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IPI] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IPI] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001128 GO:GO:0005739 GO:GO:0000166 EMBL:BK006934
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0048026 GO:GO:0006376 GO:GO:0071004 OrthoDB:EOG44BFB8
EMBL:U00060 GO:GO:0005685 EMBL:X64763 EMBL:D11461 PIR:S46720
RefSeq:NP_011954.1 ProteinModelPortal:Q00539 SMR:Q00539
DIP:DIP-2749N IntAct:Q00539 MINT:MINT-612683 STRING:Q00539
PaxDb:Q00539 PeptideAtlas:Q00539 EnsemblFungi:YHR086W GeneID:856486
KEGG:sce:YHR086W CYGD:YHR086w GeneTree:ENSGT00510000047100
HOGENOM:HOG000066109 OMA:MNTGMNT NextBio:982182
Genevestigator:Q00539 GermOnline:YHR086W Uniprot:Q00539
Length = 523
Score = 186 (70.5 bits), Expect = 7.9e-22, Sum P(2) = 7.9e-22
Identities = 38/77 (49%), Positives = 50/77 (64%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKL 142
+ NN T+F+G L S V++ +LR F FG I+ VKIPVGK CGFVQ+ +R AE A+ +
Sbjct: 309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGM 368
Query: 143 QGTAIGKQTVRLSSGHN 159
QG I VRLS G +
Sbjct: 369 QGFPIANSRVRLSWGRS 385
Score = 100 (40.3 bits), Expect = 7.9e-22, Sum P(2) = 7.9e-22
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
K++ D T +KGYGFV+F + +E+ A+ EM GV+ + R + + P SG QQ S
Sbjct: 194 KIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVG---P--TSGQQQHVS 248
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 203 (76.5 bits), Expect = 9.4e-16, P = 9.4e-16
Identities = 61/177 (34%), Positives = 92/177 (51%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+VI + TDR++GYG+V F +++ +A+ EM G RP++ D++T K
Sbjct: 198 RVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSK---------- 247
Query: 61 SQALVLAGGPASNGTRVQ--GSDGESNNATIFVGALDSDVSDKD-LREPFSHFGEILSVK 117
PA N R + G + T+F+G L + +D+D + E F+ GE++SV+
Sbjct: 248 ---------PAGNNDRAKKFGDTPSEPSDTLFLGNLSFN-ADRDAIFELFAKHGEVVSVR 297
Query: 118 IPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS-SGHNPGNKQWRG 167
IP KG G+VQF+N +DA+ AL LQG I + VRL S P N RG
Sbjct: 298 IPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNNDGGRG 354
Score = 127 (49.8 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 41/158 (25%), Positives = 73/158 (46%)
Query: 38 SSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSD 97
SS S D + K+ S +++ S A +SN + Q ++ ATIFVG L
Sbjct: 121 SSSSSSSDSESEKEESNDKKRKSEDAEEEEDEESSN--KKQKNEETEEPATIFVGRLSWS 178
Query: 98 VSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQT 151
+ D+ L++ F H G ++ ++ +G G+V F N+ AE A+Q++QG I +
Sbjct: 179 IDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRP 238
Query: 152 VR--LSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
+ +S+ GN + + D ++ N +F
Sbjct: 239 INCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSF 276
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 192 (72.6 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 53/169 (31%), Positives = 86/169 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T R++G+GFV F ++ + A+ EMNG + SSR + + AT G + S
Sbjct: 182 RVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSS 241
Query: 61 S-QALV-LAGGPASNGTRVQGSDGESNN---ATIFVGALDSDVSDKDLREPFSHFGE--I 113
+++V L G + +G + D NN T++VG L +V+ DL F G I
Sbjct: 242 DGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVI 301
Query: 114 LSVKIPVGKGCGFVQFANRKDAEVALQ--KLQGTAIGKQTVRLSSGHNP 160
V++ KG GFV++ +A +A+Q Q +Q +R S G+ P
Sbjct: 302 EEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQ-IRCSWGNKP 349
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 188 (71.2 bits), Expect = 4.3e-14, P = 4.3e-14
Identities = 53/169 (31%), Positives = 87/169 (51%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T R++G+GFV F ++ + A+ E+ G + SR + + AT SG +Q S
Sbjct: 169 RVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSS 228
Query: 61 -SQALV-LAGGPASNGTRVQGSDGESNNA---TIFVGALDSDVSDKDLREPFSHFGE--I 113
S+++V L G + +G + NNA T++VG L +VS DL F G I
Sbjct: 229 DSKSVVELTSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVI 288
Query: 114 LSVKIPVGKGCGFVQFANRKDAEVALQ--KLQGTAIGKQTVRLSSGHNP 160
V++ KG GFV+++ +A +A+Q G+Q ++ S G P
Sbjct: 289 EEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSYLSGRQ-MKCSWGSKP 336
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 181 (68.8 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 52/169 (30%), Positives = 87/169 (51%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T R++G+GFV F ++ + A+ EMNG + SSR + + AT SG + S
Sbjct: 174 RVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSS 233
Query: 61 S-QALV-LAGGPASNGTRVQGSDGESNNA---TIFVGALDSDVSDKDLREPFSHFGE--I 113
+++V L G + +G + NN+ T++VG L +V+ DL F G I
Sbjct: 234 DGKSVVELTTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVI 293
Query: 114 LSVKIPVGKGCGFVQFANRKDAEVALQ--KLQGTAIGKQTVRLSSGHNP 160
V++ KG GFV++ +A +A+Q Q +Q ++ S G+ P
Sbjct: 294 EEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPYLFNRQ-IKCSWGNKP 341
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 179 (68.1 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 51/157 (32%), Positives = 83/157 (52%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KVI D+NT ++KGYGFV + E RA+ +MNG + R + + AT K G Q++ S
Sbjct: 165 KVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKP--GDQEKPS 222
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
S + G+ N +++VG + S +++ ++R+ F+ FG I V+I
Sbjct: 223 HY------NEKSYDEIYNQTSGD--NTSVYVGNIAS-LTEDEIRQGFASFGRITEVRIFK 273
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157
+G FV+F N+ A A+ ++ +G Q VR S G
Sbjct: 274 MQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWG 310
Score = 139 (54.0 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 30/90 (33%), Positives = 54/90 (60%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQKL 142
+FVG L S+V ++ LRE F FG++ K+ KG GFV + R++AE A++++
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 143 QGTAIGKQTVRLS-SGHNPGNKQWRGDHIN 171
G +G++T+R + + PG+++ + H N
Sbjct: 197 NGQWLGRRTIRTNWATRKPGDQE-KPSHYN 225
Score = 64 (27.6 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVA 47
KVI D + D Y FV F D + S+A+ MN R M ++ A
Sbjct: 76 KVIFDGSNDP---YAFVEFSDHGQASQALQTMNKRLLLDREMKVNWA 119
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 175 (66.7 bits), Expect = 6.6e-13, P = 6.6e-13
Identities = 45/153 (29%), Positives = 82/153 (53%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGF+ F ++ + A+ +MNG + R + + AT K ++
Sbjct: 127 RVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNNEG 186
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + L+ N Q S +N T++ G + S +SD+ +R+ FS FG+I+ +++
Sbjct: 187 ASSKHLSYEEVLN----QSSP---SNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFP 239
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
KG FV+F + + A A+ + GT I TV+
Sbjct: 240 EKGYSFVRFDSHEGAAHAIVSVNGTCIEGHTVK 272
Score = 125 (49.1 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 137
SN+ +FVG L ++S D+R F+ FG+I ++ GK G GF+ F N+ DAE
Sbjct: 94 SNHFHVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAES 153
Query: 138 ALQKLQGTAIGKQTVR 153
A+Q++ G +G + +R
Sbjct: 154 AIQQMNGQWLGGRQIR 169
Score = 52 (23.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 20/69 (28%), Positives = 31/69 (44%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVA-TPKKASGYQQQC 59
K+I+D T Y FV F + + A+ MNG + M ++ A TP S ++
Sbjct: 39 KMILD--TTGNDPYCFVEFYENRHAAAALAAMNGRKILGKDMKVNWASTP---SSQKKDT 93
Query: 60 SSQALVLAG 68
S+ V G
Sbjct: 94 SNHFHVFVG 102
>UNIPROTKB|Q49AS9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 EMBL:AC012468
HOVERGEN:HBG105006 RefSeq:NP_001029097.1 RefSeq:NP_003243.1
UniGene:Hs.501203 GeneID:7073 KEGG:hsa:7073 CTD:7073
HGNC:HGNC:11804 PharmGKB:PA36513 ChiTaRS:TIAL1 GenomeRNAi:7073
NextBio:27661 EMBL:BC030025 IPI:IPI01013673 SMR:Q49AS9
STRING:Q49AS9 Ensembl:ENST00000369092 UCSC:uc001lek.1
Uniprot:Q49AS9
Length = 252
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 44/153 (28%), Positives = 77/153 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++ + A++ M G + R + + AT K + Q
Sbjct: 4 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ-E 62
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ L N Q S N T++ G + S ++D+ +R+ FS FG+I+ +++
Sbjct: 63 NNTKQLRFEDVVN----QSSP---KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 115
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
KG FV+F+ + A A+ + GT I V+
Sbjct: 116 EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 148
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 170 (64.9 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 43/153 (28%), Positives = 79/153 (51%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++ + A++ M G + R + + AT K + Q +
Sbjct: 145 RVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSVQDN 204
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
S A L N + Q N T++ G + S +++ +R+ FS FG+I+ +++
Sbjct: 205 S-AKQLRFDEVVNQSSPQ-------NCTVYCGGIQSGLTEHLMRQTFSPFGQIMEIRVFP 256
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
KG F++F++ + A A+ + GT I V+
Sbjct: 257 EKGYSFIRFSSHESAAHAIVSVNGTTIEGHVVK 289
Score = 112 (44.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 137
SN+ +FVG L +++ D+R F+ FG+I ++ GK G GFV F N+ DAE
Sbjct: 112 SNHFHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAEN 171
Query: 138 ALQKLQGTAIGKQTVR 153
A+ + G +G + +R
Sbjct: 172 AIVHMGGQWLGGRQIR 187
Score = 46 (21.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 14 YGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAG 68
Y FV F + + + A+ MNG + + ++ AT S ++ S+ V G
Sbjct: 68 YCFVEFFEHRDAAAALAAMNGRKILGKEVKVNWATTP--SSQKKDTSNHFHVFVG 120
>ZFIN|ZDB-GENE-050522-502 [details] [associations]
symbol:trnau1ap "tRNA selenocysteine 1 associated
protein 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050522-502 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00510000047100 CTD:54952
HOGENOM:HOG000234338 HOVERGEN:HBG056959 OrthoDB:EOG44BB34
EMBL:BX530067 EMBL:BC095331 IPI:IPI00607273 RefSeq:NP_001018445.1
UniGene:Dr.107924 ProteinModelPortal:Q503H1 SMR:Q503H1
STRING:Q503H1 Ensembl:ENSDART00000052292 GeneID:553636
KEGG:dre:553636 InParanoid:Q503H1 OMA:NVTEANE NextBio:20880371
Bgee:Q503H1 Uniprot:Q503H1
Length = 314
Score = 137 (53.3 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 42/124 (33%), Positives = 63/124 (50%)
Query: 79 GSDGESNNATIFVGALDSDVSDKDLREPFS-HFGEILSVKIPV-----GKGCGFVQFANR 132
G GES+ ++FV L DV D L E F HF S KI + K CGFV F +
Sbjct: 86 GKQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLDANGHSKCCGFVSFESE 145
Query: 133 KDAEVALQKLQG-TAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQD---ATYVNNRNFF 188
++ + AL LQG T +GK+ +RLS + NK+ + D A+++N + ++
Sbjct: 146 REQKRALVDLQGATGLGKKALRLSLASSRVNKKKESSENQIWQYHSDSKNASFIN-QYYY 204
Query: 189 PKKL 192
P+ L
Sbjct: 205 PQNL 208
Score = 63 (27.2 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNG 34
++I D T + GYGFV D+ R + ++NG
Sbjct: 33 RLIRDKITGKNAGYGFVELADDTAVERCLRKVNG 66
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 167 (63.8 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 44/153 (28%), Positives = 77/153 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++ + A++ M G + R + + AT K + Q
Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ-E 202
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ L N Q S N T++ G + S ++D+ +R+ FS FG+I+ +++
Sbjct: 203 TNTKQLRFEDVVN----QSSP---KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 255
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
KG FV+F+ + A A+ + GT I V+
Sbjct: 256 EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
Score = 112 (44.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 137
SN+ +FVG L +++ +D++ F+ FG+I ++ GK G GFV F N+ DAE
Sbjct: 111 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 170
Query: 138 ALQKLQGTAIGKQTVR 153
A+ + G +G + +R
Sbjct: 171 AIVHMGGQWLGGRQIR 186
Score = 46 (21.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 14 YGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAG 68
Y FV F + + + A+ MNG + + ++ AT S ++ S+ V G
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP--SSQKKDTSNHFHVFVG 119
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 167 (63.8 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 44/153 (28%), Positives = 77/153 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++ + A++ M G + R + + AT K + Q
Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ-E 202
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ L N Q S N T++ G + S ++D+ +R+ FS FG+I+ +++
Sbjct: 203 TNTKQLRFEDVVN----QSSP---KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 255
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
KG FV+F+ + A A+ + GT I V+
Sbjct: 256 EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
Score = 112 (44.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 137
SN+ +FVG L +++ +D++ F+ FG+I ++ GK G GFV F N+ DAE
Sbjct: 111 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 170
Query: 138 ALQKLQGTAIGKQTVR 153
A+ + G +G + +R
Sbjct: 171 AIVHMGGQWLGGRQIR 186
Score = 46 (21.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 14 YGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAG 68
Y FV F + + + A+ MNG + + ++ AT S ++ S+ V G
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP--SSQKKDTSNHFHVFVG 119
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 167 (63.8 bits), Expect = 6.6e-12, P = 6.6e-12
Identities = 44/153 (28%), Positives = 77/153 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++ + A++ M G + R + + AT K + Q
Sbjct: 127 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ-E 185
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ L N Q S N T++ G + S ++D+ +R+ FS FG+I+ +++
Sbjct: 186 NNTKQLRFEDVVN----QSSP---KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 238
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
KG FV+F+ + A A+ + GT I V+
Sbjct: 239 EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 271
Score = 112 (44.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 137
SN+ +FVG L +++ +D++ F+ FG+I ++ GK G GFV F N+ DAE
Sbjct: 94 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 153
Query: 138 ALQKLQGTAIGKQTVR 153
A+ + G +G + +R
Sbjct: 154 AIVHMGGQWLGGRQIR 169
Score = 47 (21.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 8 TDRTKG--YGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALV 65
T+ T Y FV F + + + A+ MNG + + ++ AT S ++ S+ V
Sbjct: 42 TEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP--SSQKKDTSNHFHV 99
Query: 66 LAG 68
G
Sbjct: 100 FVG 102
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 167 (63.8 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 44/153 (28%), Positives = 77/153 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++ + A++ M G + R + + AT K + Q
Sbjct: 127 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ-E 185
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ L N Q S N T++ G + S ++D+ +R+ FS FG+I+ +++
Sbjct: 186 NNTKQLRFEDVVN----QSSP---KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 238
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
KG FV+F+ + A A+ + GT I V+
Sbjct: 239 EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 271
Score = 112 (44.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 137
SN+ +FVG L +++ +D++ F+ FG+I ++ GK G GFV F N+ DAE
Sbjct: 94 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 153
Query: 138 ALQKLQGTAIGKQTVR 153
A+ + G +G + +R
Sbjct: 154 AIVHMGGQWLGGRQIR 169
Score = 47 (21.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 8 TDRTKG--YGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALV 65
T+ T Y FV F + + + A+ MNG + + ++ AT S ++ S+ V
Sbjct: 42 TEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP--SSQKKDTSNHFHV 99
Query: 66 LAG 68
G
Sbjct: 100 FVG 102
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 167 (63.8 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 44/153 (28%), Positives = 77/153 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++ + A++ M G + R + + AT K + Q
Sbjct: 143 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ-E 201
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ L N Q S N T++ G + S ++D+ +R+ FS FG+I+ +++
Sbjct: 202 NNTKQLRFEDVVN----QSSP---KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 254
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
KG FV+F+ + A A+ + GT I V+
Sbjct: 255 EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 287
Score = 112 (44.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 137
SN+ +FVG L +++ +D++ F+ FG+I ++ GK G GFV F N+ DAE
Sbjct: 110 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 169
Query: 138 ALQKLQGTAIGKQTVR 153
A+ + G +G + +R
Sbjct: 170 AIVHMGGQWLGGRQIR 185
Score = 46 (21.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 14 YGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAG 68
Y FV F + + + A+ MNG + + ++ AT S ++ S+ V G
Sbjct: 66 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP--SSQKKDTSNHFHVFVG 118
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 167 (63.8 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 44/153 (28%), Positives = 77/153 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++ + A++ M G + R + + AT K + Q
Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ-E 202
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ L N Q S N T++ G + S ++D+ +R+ FS FG+I+ +++
Sbjct: 203 NNTKQLRFEDVVN----QSSP---KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 255
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
KG FV+F+ + A A+ + GT I V+
Sbjct: 256 EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
Score = 112 (44.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 137
SN+ +FVG L +++ +D++ F+ FG+I ++ GK G GFV F N+ DAE
Sbjct: 111 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 170
Query: 138 ALQKLQGTAIGKQTVR 153
A+ + G +G + +R
Sbjct: 171 AIVHMGGQWLGGRQIR 186
Score = 46 (21.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 14 YGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAG 68
Y FV F + + + A+ MNG + + ++ AT S ++ S+ V G
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP--SSQKKDTSNHFHVFVG 119
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 167 (63.8 bits), Expect = 7.3e-12, P = 7.3e-12
Identities = 44/153 (28%), Positives = 77/153 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++ + A++ M G + R + + AT K + Q
Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ-E 202
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ L N Q S N T++ G + S ++D+ +R+ FS FG+I+ +++
Sbjct: 203 NNTKQLRFEDVVN----QSSP---KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 255
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
KG FV+F+ + A A+ + GT I V+
Sbjct: 256 EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
Score = 112 (44.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 137
SN+ +FVG L +++ +D++ F+ FG+I ++ GK G GFV F N+ DAE
Sbjct: 111 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 170
Query: 138 ALQKLQGTAIGKQTVR 153
A+ + G +G + +R
Sbjct: 171 AIVHMGGQWLGGRQIR 186
Score = 46 (21.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 14 YGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAG 68
Y FV F + + + A+ MNG + + ++ AT S ++ S+ V G
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP--SSQKKDTSNHFHVFVG 119
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 167 (63.8 bits), Expect = 7.3e-12, P = 7.3e-12
Identities = 44/153 (28%), Positives = 77/153 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++ + A++ M G + R + + AT K + Q
Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ-E 202
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ L N Q S N T++ G + S ++D+ +R+ FS FG+I+ +++
Sbjct: 203 NNTKQLRFEDVVN----QSSP---KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 255
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
KG FV+F+ + A A+ + GT I V+
Sbjct: 256 EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
Score = 112 (44.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 137
SN+ +FVG L +++ +D++ F+ FG+I ++ GK G GFV F N+ DAE
Sbjct: 111 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 170
Query: 138 ALQKLQGTAIGKQTVR 153
A+ + G +G + +R
Sbjct: 171 AIVHMGGQWLGGRQIR 186
Score = 46 (21.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 14 YGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAG 68
Y FV F + + + A+ MNG + + ++ AT S ++ S+ V G
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP--SSQKKDTSNHFHVFVG 119
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 167 (63.8 bits), Expect = 7.3e-12, P = 7.3e-12
Identities = 44/153 (28%), Positives = 77/153 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++ + A++ M G + R + + AT K + Q
Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ-E 202
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ L N Q S N T++ G + S ++D+ +R+ FS FG+I+ +++
Sbjct: 203 TNTKQLRFEDVVN----QSSP---KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 255
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
KG FV+F+ + A A+ + GT I V+
Sbjct: 256 EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
Score = 112 (44.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 137
SN+ +FVG L +++ +D++ F+ FG+I ++ GK G GFV F N+ DAE
Sbjct: 111 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 170
Query: 138 ALQKLQGTAIGKQTVR 153
A+ + G +G + +R
Sbjct: 171 AIVHMGGQWLGGRQIR 186
Score = 46 (21.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 14 YGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAG 68
Y FV F + + + A+ MNG + + ++ AT S ++ S+ V G
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP--SSQKKDTSNHFHVFVG 119
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 167 (63.8 bits), Expect = 7.3e-12, P = 7.3e-12
Identities = 44/153 (28%), Positives = 77/153 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++ + A++ M G + R + + AT K + Q
Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ-E 202
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ L N Q S N T++ G + S ++D+ +R+ FS FG+I+ +++
Sbjct: 203 TNTKQLRFEDVVN----QSSP---KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 255
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
KG FV+F+ + A A+ + GT I V+
Sbjct: 256 EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
Score = 112 (44.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 137
SN+ +FVG L +++ +D++ F+ FG+I ++ GK G GFV F N+ DAE
Sbjct: 111 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 170
Query: 138 ALQKLQGTAIGKQTVR 153
A+ + G +G + +R
Sbjct: 171 AIVHMGGQWLGGRQIR 186
Score = 46 (21.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 14 YGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAG 68
Y FV F + + + A+ MNG + + ++ AT S ++ S+ V G
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP--SSQKKDTSNHFHVFVG 119
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 166 (63.5 bits), Expect = 9.1e-12, P = 9.1e-12
Identities = 42/153 (27%), Positives = 78/153 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++ + A+ +M G + R + + AT +K +
Sbjct: 136 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT-RKPPAPKSTYE 194
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
S L+ S NN T++ G + S ++++ +R+ FS FG+I+ +++
Sbjct: 195 SNTKQLSYDEVV-------SQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP 247
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
KG FV+F++ + A A+ + GT I V+
Sbjct: 248 DKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVK 280
Score = 124 (48.7 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 40/146 (27%), Positives = 72/146 (49%)
Query: 14 YGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASN 73
Y FV F + + A+ MNG + + ++ AT + Q++ +S + V++
Sbjct: 48 YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSS---QKKDTSSSTVVS------ 98
Query: 74 GTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFV 127
Q S + +FVG L +++ +D++ F+ FG I ++ GK G GFV
Sbjct: 99 ---TQRSQDHFH---VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFV 152
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVR 153
F N+ DAE A+Q++ G +G + +R
Sbjct: 153 SFFNKWDAENAIQQMGGQWLGGRQIR 178
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 164 (62.8 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 42/153 (27%), Positives = 80/153 (52%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++ + A+ +M G + R + + AT +K +
Sbjct: 125 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT-RKPPAPKSTYE 183
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
S L+ + Q S G N T++ G + S ++++ +R+ FS FG+I+ +++
Sbjct: 184 SNTKQLSYDEVVS----QSSPG---NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP 236
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
KG F++F++ + A A+ + GT I V+
Sbjct: 237 DKGYSFIRFSSHESAAHAIVSVNGTTIEGHVVK 269
Score = 118 (46.6 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 137
SN+ +FVG L +++ +D++ F+ FG I ++ GK G GFV F N+ DAE
Sbjct: 92 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 151
Query: 138 ALQKLQGTAIGKQTVR 153
A+Q++ G +G + +R
Sbjct: 152 AIQQMGGQWLGGRQIR 167
Score = 50 (22.7 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
K+I+D T Y FV F + + A+ MNG + + ++ AT S ++ S
Sbjct: 37 KMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTP--SSQKKDTS 92
Query: 61 SQALVLAG 68
+ V G
Sbjct: 93 NHFHVFVG 100
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 164 (62.8 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 42/153 (27%), Positives = 80/153 (52%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++ + A+ +M G + R + + AT +K +
Sbjct: 132 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT-RKPPAPKSTYE 190
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
S L+ + Q S G N T++ G + S ++++ +R+ FS FG+I+ +++
Sbjct: 191 SNTKQLSYDEVVS----QSSPG---NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP 243
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
KG F++F++ + A A+ + GT I V+
Sbjct: 244 DKGYSFIRFSSHESAAHAIVSVNGTTIEGHVVK 276
Score = 124 (48.7 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 40/146 (27%), Positives = 72/146 (49%)
Query: 14 YGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASN 73
Y FV F + + A+ MNG + + ++ AT + Q++ +S + V++
Sbjct: 44 YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSS---QKKDTSSSTVVS------ 94
Query: 74 GTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFV 127
Q S + +FVG L +++ +D++ F+ FG I ++ GK G GFV
Sbjct: 95 ---TQRSQDHFH---VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFV 148
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVR 153
F N+ DAE A+Q++ G +G + +R
Sbjct: 149 SFFNKWDAENAIQQMGGQWLGGRQIR 174
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 162 (62.1 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 43/153 (28%), Positives = 79/153 (51%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++ + A+ +M G + R + + AT +K +
Sbjct: 125 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT-RKPPAPKSTYE 183
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
S L+ N Q S +N T++ G + S ++++ +R+ FS FG+I+ +++
Sbjct: 184 SNTKQLSYDDVVN----QSSP---SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP 236
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
KG FV+F + + A A+ + GT I V+
Sbjct: 237 DKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK 269
Score = 118 (46.6 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 137
SN+ +FVG L +++ +D++ F+ FG I ++ GK G GFV F N+ DAE
Sbjct: 92 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 151
Query: 138 ALQKLQGTAIGKQTVR 153
A+Q++ G +G + +R
Sbjct: 152 AIQQMGGQWLGGRQIR 167
Score = 49 (22.3 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
K+I+D T Y FV F + + A+ MNG + + ++ AT S ++ S
Sbjct: 37 KMIMD--TAGNDPYCFVEFYEHRHAASALAAMNGRKIMGKEVKVNWATTP--SSQKKDTS 92
Query: 61 SQALVLAG 68
+ V G
Sbjct: 93 NHFHVFVG 100
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 162 (62.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 43/153 (28%), Positives = 79/153 (51%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++ + A+ +M G + R + + AT +K +
Sbjct: 136 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT-RKPPAPKSTYE 194
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
S L+ N Q S +N T++ G + S ++++ +R+ FS FG+I+ +++
Sbjct: 195 SNTKQLSYDEVVN----QSSP---SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP 247
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
KG FV+F + + A A+ + GT I V+
Sbjct: 248 DKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK 280
Score = 123 (48.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 40/146 (27%), Positives = 72/146 (49%)
Query: 14 YGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASN 73
Y FV F + + A+ MNG + + ++ AT + Q++ +S + V++
Sbjct: 48 YCFVEFYEHRHAAAALAAMNGRKIMGKEVKVNWATTPSS---QKKDTSSSTVVS------ 98
Query: 74 GTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFV 127
Q S + +FVG L +++ +D++ F+ FG I ++ GK G GFV
Sbjct: 99 ---TQRSQDHFH---VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFV 152
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVR 153
F N+ DAE A+Q++ G +G + +R
Sbjct: 153 SFFNKWDAENAIQQMGGQWLGGRQIR 178
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 162 (62.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 43/153 (28%), Positives = 79/153 (51%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++ + A+ +M G + R + + AT +K +
Sbjct: 136 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT-RKPPAPKSTYE 194
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
S L+ N Q S +N T++ G + S ++++ +R+ FS FG+I+ +++
Sbjct: 195 SNTKQLSYDEVVN----QSSP---SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP 247
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
KG FV+F + + A A+ + GT I V+
Sbjct: 248 DKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK 280
Score = 124 (48.7 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 40/146 (27%), Positives = 72/146 (49%)
Query: 14 YGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASN 73
Y FV F + + A+ MNG + + ++ AT + Q++ +S + V++
Sbjct: 48 YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSS---QKKDTSSSTVVS------ 98
Query: 74 GTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFV 127
Q S + +FVG L +++ +D++ F+ FG I ++ GK G GFV
Sbjct: 99 ---TQRSQDHFH---VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFV 152
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVR 153
F N+ DAE A+Q++ G +G + +R
Sbjct: 153 SFFNKWDAENAIQQMGGQWLGGRQIR 178
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 162 (62.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 43/153 (28%), Positives = 79/153 (51%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++ + A+ +M G + R + + AT +K +
Sbjct: 136 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT-RKPPAPKSTYE 194
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
S L+ N Q S +N T++ G + S ++++ +R+ FS FG+I+ +++
Sbjct: 195 SNTKQLSYDEVVN----QSSP---SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP 247
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
KG FV+F + + A A+ + GT I V+
Sbjct: 248 DKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK 280
Score = 124 (48.7 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 40/146 (27%), Positives = 72/146 (49%)
Query: 14 YGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASN 73
Y FV F + + A+ MNG + + ++ AT + Q++ +S + V++
Sbjct: 48 YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSS---QKKDTSSSTVVS------ 98
Query: 74 GTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFV 127
Q S + +FVG L +++ +D++ F+ FG I ++ GK G GFV
Sbjct: 99 ---TQRSQDHFH---VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFV 152
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVR 153
F N+ DAE A+Q++ G +G + +R
Sbjct: 153 SFFNKWDAENAIQQMGGQWLGGRQIR 178
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 163 (62.4 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 49/177 (27%), Positives = 84/177 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
K+I D+NT++ KGYGFV + + RA+ EMNG + R + + AT K ++
Sbjct: 162 KIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRKPDEDGERGGD 221
Query: 61 SQALVLAGGPASNGTRVQG--------SDGESNNATIFVGALDSDVSDKDLREPFSHFGE 112
GG + Q + ++N +++VG + +++ + ++R F FG
Sbjct: 222 RGDRRGGGGGGRDRYHNQSEKTYDEIFNQAAADNTSVYVGNI-ANLGEDEIRRAFDRFGP 280
Query: 113 ILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHN--PGNKQWRG 167
I V+ +G FV+F ++ A A+ ++ IG Q VR S G + G RG
Sbjct: 281 INEVRTFKIQGYAFVKFETKESAARAIVQMNNADIGGQIVRCSWGKSGDSGKPSERG 337
Score = 134 (52.2 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 33/91 (36%), Positives = 49/91 (53%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRKDAEV 137
S + +FVG L S++ LRE F FGE+ KI GKG GFV + R+DAE
Sbjct: 129 SRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAER 188
Query: 138 ALQKLQGTAIGKQTVRLS-SGHNPGNKQWRG 167
A+ ++ G +G++T+R + + P RG
Sbjct: 189 AIDEMNGAWLGRRTIRTNWATRKPDEDGERG 219
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 162 (62.1 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 43/153 (28%), Positives = 79/153 (51%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++ + A+ +M G + R + + AT +K +
Sbjct: 136 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT-RKPPAPKSTYE 194
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
S L+ N Q S +N T++ G + S ++++ +R+ FS FG+I+ +++
Sbjct: 195 SNTKQLSYDEVVN----QSSP---SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP 247
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
KG FV+F + + A A+ + GT I V+
Sbjct: 248 DKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK 280
Score = 123 (48.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 40/146 (27%), Positives = 72/146 (49%)
Query: 14 YGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASN 73
Y FV F + + A+ MNG + + ++ AT + Q++ +S + V++
Sbjct: 48 YCFVEFYEHRHAAAALAAMNGRKIMGKEVKVNWATTPSS---QKKDTSSSTVVS------ 98
Query: 74 GTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFV 127
Q S + +FVG L +++ +D++ F+ FG I ++ GK G GFV
Sbjct: 99 ---TQRSQDHFH---VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFV 152
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVR 153
F N+ DAE A+Q++ G +G + +R
Sbjct: 153 SFFNKWDAENAIQQMGGQWLGGRQIR 178
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 158 (60.7 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 44/174 (25%), Positives = 79/174 (45%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP--KKASGYQQQ 58
+VI D T R++G+GFV +E A + NG RP+ ++ P K+ G+ +
Sbjct: 121 EVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRG 180
Query: 59 CSSQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI 118
S G + +G G G + ++VG L V D L FS G+++ ++
Sbjct: 181 PRSSF-----GSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARV 235
Query: 119 PV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH-NPGNKQW 165
KG GFV + + ++ + A++ L G + + +R+S P +Q+
Sbjct: 236 IYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 161 (61.7 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 43/157 (27%), Positives = 78/157 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KVI D T ++KGYGFV F ++ A+ MNG + R + + A K + + + +
Sbjct: 255 KVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLT 314
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + N T+ ++N +++VG + +D DLR+ FS +G+I V+I
Sbjct: 315 FEQVF-------NSTK-------ADNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFK 360
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157
+ FV++ ++ A A+ ++ G + VR S G
Sbjct: 361 TQRYAFVRYEKKECATKAIMEMNGKEMAGNQVRCSWG 397
Score = 127 (49.8 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRKDAEV 137
S + +FVG L DVS++ L+ F+ FGE+ K+ KG GFV F N+++AE
Sbjct: 222 SKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAEN 281
Query: 138 ALQKLQGTAIGKQTVR 153
A+ + G IGK+ VR
Sbjct: 282 AIAGMNGKWIGKRAVR 297
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 158 (60.7 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 51/178 (28%), Positives = 88/178 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++E A+ MNG + SR + + AT K + +
Sbjct: 126 RVVRDPQTLKSKGYGFVSFVKKSEAETAITAMNGQWLGSRSIRTNWATRKPPA---TKAD 182
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVG----ALDSDVSDKDLREPFSHFGEILSV 116
A L N Q S N T++ G AL ++++ L++ FS +G I +
Sbjct: 183 MNAKPLTFDEVYN----QSSP---TNCTVYCGGINGALSGFLNEEILQKTFSPYGTIQEI 235
Query: 117 KIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIA 174
++ KG FV+F+ ++ A A+ + T I +Q V+ + G G+ +H++ IA
Sbjct: 236 RVFKDKGYAFVRFSTKEAATHAIVAVNNTEINQQPVKCAWGKESGDP----NHMSAIA 289
Score = 116 (45.9 bits), Expect = 0.00014, P = 0.00014
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 79 GSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI---PV---GKGCGFVQFANR 132
G++ + IFVG L +++ + L++ F+ FGEI ++ P KG GFV F +
Sbjct: 88 GNNSKPEQFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKK 147
Query: 133 KDAEVALQKLQGTAIGKQTVR 153
+AE A+ + G +G +++R
Sbjct: 148 SEAETAITAMNGQWLGSRSIR 168
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 157 (60.3 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 51/192 (26%), Positives = 89/192 (46%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQ-QQC 59
+++ D +T ++KGY FV F + E A+ MNG + SR + + +T K + +
Sbjct: 125 RIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPPREPSKG 184
Query: 60 SSQALVLAGGPASNGTRVQGSD--------GESN--NATIFVGALDSDVSDKDL-REPFS 108
Q + GGP NG+ V+GS +S+ N T++ G +V DL + F
Sbjct: 185 GGQGGGMGGGPG-NGSGVKGSQRHTFEEVYNQSSPTNTTVYCGGFPPNVISDDLMHKHFV 243
Query: 109 HFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWRGD 168
FG I V++ KG F++F ++ A A++ + + V+ G G +
Sbjct: 244 QFGPIQDVRVFKDKGFSFIKFVTKEAAAHAIEHTHNSEVHGNLVKCFWGKENGGDN-SAN 302
Query: 169 HINLIALAQDAT 180
++N A A A+
Sbjct: 303 NLNAAAAAAAAS 314
Score = 117 (46.2 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI---P---VGKGCGFVQFANRKDAEV 137
S++ IFVG L ++ + LRE F+ FGEI + +I P KG FV F + +AE
Sbjct: 92 SSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAEN 151
Query: 138 ALQKLQGTAIGKQTVR 153
A+Q + G IG +++R
Sbjct: 152 AIQAMNGQWIGSRSIR 167
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 155 (59.6 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 45/162 (27%), Positives = 82/162 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+VI++ T +++GYG+V F ++ +A+ EM G RP+++D++T K +
Sbjct: 198 RVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHAS------ 251
Query: 61 SQALVLAGGPASNGTRV-QGSDGESNNA-TIFVGALDSDVSDKDLREPFSHFGEILSVKI 118
SN R Q D +S + T+F+G L + + +L F +G ++S ++
Sbjct: 252 ----------KSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRV 301
Query: 119 PVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154
P KG G+VQF++ +A+ AL+ + G I + RL
Sbjct: 302 PTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRL 343
Score = 112 (44.5 bits), Expect = 0.00030, P = 0.00030
Identities = 32/112 (28%), Positives = 53/112 (47%)
Query: 87 ATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEVALQ 140
AT+FVG L ++ D L+ F H G ++ ++ GK G G+V F ++ AE AL+
Sbjct: 168 ATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALE 227
Query: 141 KLQGTAIGKQTVRLS-SGHNPGNKQWRGDHINLIALAQ----DATYVNNRNF 187
++QG I + + L S P + D +Q D ++ N +F
Sbjct: 228 EMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSF 279
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 155 (59.6 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 45/162 (27%), Positives = 82/162 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+VI++ T +++GYG+V F ++ +A+ EM G RP+++D++T K +
Sbjct: 198 RVIMERATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHAS------ 251
Query: 61 SQALVLAGGPASNGTRV-QGSDGESNNA-TIFVGALDSDVSDKDLREPFSHFGEILSVKI 118
SN R Q D +S + T+F+G L + + +L F +G ++S ++
Sbjct: 252 ----------KSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRV 301
Query: 119 PVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154
P KG G+VQF++ +A+ AL+ + G I + RL
Sbjct: 302 PTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRL 343
Score = 112 (44.5 bits), Expect = 0.00030, P = 0.00030
Identities = 32/112 (28%), Positives = 53/112 (47%)
Query: 87 ATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEVALQ 140
AT+FVG L ++ D L+ F H G ++ ++ GK G G+V F ++ AE AL+
Sbjct: 168 ATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALE 227
Query: 141 KLQGTAIGKQTVRLS-SGHNPGNKQWRGDHINLIALAQ----DATYVNNRNF 187
++QG I + + L S P + D +Q D ++ N +F
Sbjct: 228 EMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSF 279
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 155 (59.6 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 48/160 (30%), Positives = 76/160 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+VI D + R+KG+G+V F E +A E G + R + +D +T K + S
Sbjct: 269 RVITDRESGRSKGFGYVDFATPEEAEKAHGEKQGAFIDGREIKVDFSTGKATN------S 322
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ A AG A G + T+FVG L D + + FS E+ S+++P
Sbjct: 323 NDA---AGARAKK----YGDTVSPESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPT 375
Query: 121 ----G--KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154
G KG G+V F + +DA+ A ++L G +I + RL
Sbjct: 376 EQESGRRKGFGYVTFNSVEDAKSAFEQLNGQSINGRNCRL 415
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 153 (58.9 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 41/153 (26%), Positives = 80/153 (52%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++ + A+ +M G + R + + AT +K +
Sbjct: 126 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT-RKPPAPKATYE 184
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ L+ N Q S +N T++ G + + ++++ +R+ FS FG+I+ V++
Sbjct: 185 TNTKHLSFDEVVN----QSSP---SNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFP 237
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
KG FV+F + + A A+ + GT++ V+
Sbjct: 238 DKGYSFVRFNSHESAAHAIVSVNGTSLEGHIVK 270
Score = 119 (46.9 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 137
SN+ +FVG L +++ D+R F+ FG I ++ GK G GFV F N+ DAE
Sbjct: 93 SNHFHVFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 152
Query: 138 ALQKLQGTAIGKQTVR 153
A+Q++ G +G + +R
Sbjct: 153 AIQQMGGQWLGGRQIR 168
Score = 49 (22.3 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
K+I+D T Y FV F + + ++ MNG + + ++ AT S ++ S
Sbjct: 38 KMIVD--TAGNDPYCFVEFFEHRHAAASLAAMNGRKIMGKEVKVNWAT--SPSSQKKDTS 93
Query: 61 SQALVLAG 68
+ V G
Sbjct: 94 NHFHVFVG 101
>CGD|CAL0001768 [details] [associations]
symbol:orf19.1876 species:5476 "Candida albicans" [GO:0005685
"U1 snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0000243 "commitment complex" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0001768 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000133 EMBL:AACQ01000132
RefSeq:XP_713133.1 RefSeq:XP_713179.1 ProteinModelPortal:Q59U75
GeneID:3645147 GeneID:3645207 KEGG:cal:CaO19.1876
KEGG:cal:CaO19.9432 Uniprot:Q59U75
Length = 452
Score = 154 (59.3 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 40/157 (25%), Positives = 76/157 (48%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KVI DS+T ++KG+GFV+F + +RA+ EM G S+ + + +A + +
Sbjct: 211 KVITDSSTRKSKGFGFVKFHSPDIMNRALKEMQGYNIGSKAIRVGLAAGSHVDTSFKPVT 270
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
P S Q +D NN + +G L +++ +L + F FG+++ ++
Sbjct: 271 KLDHHRVPVPQSQPALNQFTD--PNNTSFTIGGLSGRITESELEQHFIGFGDLVYCRVSK 328
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157
G+++F +R AE A + G I ++++ G
Sbjct: 329 DYQTGYIKFYSRSAAESAFLNMYGFMINDCRLQITWG 365
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 112 (44.5 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 137
SN+ +FVG L +++ +D++ F+ FG+I ++ GK G GFV F N+ DAE
Sbjct: 55 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 114
Query: 138 ALQKLQGTAIGKQTVR 153
A+ + G +G + +R
Sbjct: 115 AIVHMGGQWLGGRQIR 130
Score = 47 (21.6 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 8 TDRTKG--YGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALV 65
T+ T Y FV F + + + A+ MNG + + ++ AT S ++ S+ V
Sbjct: 3 TEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP--SSQKKDTSNHFHV 60
Query: 66 LAG 68
G
Sbjct: 61 FVG 63
>FB|FBgn0085391 [details] [associations]
symbol:CG34362 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000381 GeneTree:ENSGT00680000099967
RefSeq:NP_001163754.1 UniGene:Dm.13924 ProteinModelPortal:E1JIZ9
SMR:E1JIZ9 EnsemblMetazoa:FBtr0301397 GeneID:43362
KEGG:dme:Dmel_CG34362 FlyBase:FBgn0085391 GenomeRNAi:43362
NextBio:833552 Bgee:E1JIZ9 Uniprot:E1JIZ9
Length = 800
Score = 155 (59.6 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 47/165 (28%), Positives = 83/165 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++E A+ MNG + SR + + AT K + + +
Sbjct: 491 RVVRDPQTLKSKGYGFVSFIKKSEAESAITAMNGQWLGSRSIRTNWATRKPPASKE---N 547
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDV---SDKDLREPFSHFGEILSVK 117
+ L V SN T++VG ++S + S++ L++ F+ +G I ++
Sbjct: 548 IKPLTF--------DEVYNQSSPSN-CTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIR 598
Query: 118 IPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGN 162
+ KG FV+F+ ++ A A+ + T I Q V+ S G G+
Sbjct: 599 VFKDKGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSWGKESGD 643
Score = 118 (46.6 bits), Expect = 0.00014, P = 0.00014
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKI---PV---GKGCGFVQFANRKDAEVALQKL 142
IFVG L S++ + LRE F+ FGEI ++ P KG GFV F + +AE A+ +
Sbjct: 463 IFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAM 522
Query: 143 QGTAIGKQTVR 153
G +G +++R
Sbjct: 523 NGQWLGSRSIR 533
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 150 (57.9 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 45/161 (27%), Positives = 82/161 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KVI D+ T ++KG+GFVR+ +A++E++G + + + A K + +
Sbjct: 229 KVIRDA-TGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRR 287
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ L L + TR G I++ LD ++D+ L+E FS FG I K+ +
Sbjct: 288 FERLKL-----KDKTRPPG-------VPIYIKNLDETINDEKLKEEFSLFGSISRAKVMM 335
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157
GKG G V F++ ++A A+ ++ G +G +T+ ++ G
Sbjct: 336 EVGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLG 376
Score = 92 (37.4 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 70 PASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI---PVGK--GC 124
P V+ D + +FV D+ D+ L++ FS +G SVK+ GK G
Sbjct: 183 PEERAAEVRTRD-RATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGF 241
Query: 125 GFVQFANRKDAEVALQKLQGTAI-GK 149
GFV++ + A+ A+ +L G +I GK
Sbjct: 242 GFVRYETHEAAQKAVLELHGKSIDGK 267
Score = 68 (29.0 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGY +V F +RA+ MNGV ++R + +
Sbjct: 136 KVVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 109 (43.4 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 27/93 (29%), Positives = 48/93 (51%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-------GKGCGFVQFANR 132
S +A ++V L +S KD+ + FS +G I++ +I V +G GF++F R
Sbjct: 117 SSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKR 176
Query: 133 KDAEVALQKLQGTA-IGK-QTVRLSSGHNPGNK 163
+AE A++ L G +G + + + +NP K
Sbjct: 177 NEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
Score = 92 (37.4 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D N+ +A+ +NG+ ++ + + A P AS
Sbjct: 68 KLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 120
Score = 77 (32.2 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 142
IFV L + + L + F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 143 QGTAIGKQTVRLS 155
G +G + +++S
Sbjct: 338 NGYRLGDRVLQVS 350
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 113 (44.8 bits), Expect = 6.2e-10, Sum P(3) = 6.2e-10
Identities = 32/98 (32%), Positives = 54/98 (55%)
Query: 78 QGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI---P-VGKG-C-GFVQFAN 131
Q S +S +A +++ L+ V++ +L+E F FG+++ KI P G C GFV F+
Sbjct: 188 QASSSQSTHANLYINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQ 247
Query: 132 RKDAEVALQKLQGTAIGKQT----VRLS---SGHNPGN 162
R++A A+ + G I Q+ V+ + SG+N GN
Sbjct: 248 RREALKAVSSMNGANIPFQSTPIYVKFANQLSGNNNGN 285
Score = 87 (35.7 bits), Expect = 6.2e-10, Sum P(3) = 6.2e-10
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 5 DSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVA 47
+SN + + GYGFV+F ++E + A+ ++NG S+P+ + A
Sbjct: 145 NSNNNSSLGYGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSYA 187
Score = 64 (27.6 bits), Expect = 0.00081, Sum P(2) = 0.00080
Identities = 19/97 (19%), Positives = 47/97 (48%)
Query: 68 GGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFV 127
G +SNG ++ ++ I + L +++ + L + F+ FG I V++ + G +
Sbjct: 433 GNSSSNGNNSNNNNNIMSSFPIHISNLPNNIDETFLYKLFA-FGAISGVQL-LNNGQAII 490
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVRLS--SGHNPGN 162
+ + + + A+ L G I +++++ + +P N
Sbjct: 491 TYLDYQTVQNAINTLNGKIISGRSLKVVCLTNSSPSN 527
Score = 36 (17.7 bits), Expect = 6.2e-10, Sum P(3) = 6.2e-10
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 155 SSGHNPGNKQWRGDHIN 171
S+ +N NK G+H N
Sbjct: 341 SNNNNNNNKNSNGNHNN 357
>UNIPROTKB|F1SF34 [details] [associations]
symbol:F1SF34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 EMBL:CU929885
Ensembl:ENSSSCT00000017014 OMA:SPDIETH Uniprot:F1SF34
Length = 250
Score = 144 (55.7 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 43/154 (27%), Positives = 75/154 (48%)
Query: 1 KVIIDSNTDRTKGYGFVRFG-DENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQC 59
+V+ D T ++KGYG V F ++ + A++ M G + R + AT K + Q
Sbjct: 4 RVVKDMATGKSKGYGSVSFFYNKLDAENAIVRMGGQWLGGRQIKTSWATRKPPAPKSTQ- 62
Query: 60 SSQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIP 119
+ L N Q S S N T++ G + S ++D+ +R+ FS FG+I+ +++
Sbjct: 63 ENNTKQLKFEDVVN----QSS---SKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF 115
Query: 120 VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
K FV+F+ A A+ + GT I + V+
Sbjct: 116 PEKRYSFVRFSTHGSAAHAIVSVTGTTIEGRVVK 149
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 150 (57.9 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 41/160 (25%), Positives = 77/160 (48%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+++ + +T R++G+G+V F + + ++A M R +++D AT + A+ Q
Sbjct: 306 RIMTERDTGRSRGFGYVEFTNAADAAKAYEAMKEHEIDGRKINLDYATGRPANKDQGGFK 365
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+A N R G + T+FVG L ++ + E F G +L +++P
Sbjct: 366 ERA--------QNRARSFGDQTSPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPT 417
Query: 121 G------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154
KG G+VQ+++ +A A +LQG I + +RL
Sbjct: 418 DMESGRPKGFGYVQYSSVDEARKAYNELQGAEIDGRPIRL 457
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 105 (42.0 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRK 133
S +A ++V L +S K++ + FS +G I++ +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 177
Query: 134 DAEVALQKLQGTA-IGK-QTVRLSSGHNPGNK 163
+AE A++ L G +G + + + +NP K
Sbjct: 178 EAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
Score = 95 (38.5 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D N+ +A+ +NG+ ++ + + A P AS
Sbjct: 69 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 121
Score = 79 (32.9 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 142
IFV L + + L + F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 143 QGTAIGKQTVRLS 155
G +G++ +++S
Sbjct: 346 NGYRLGERVLQVS 358
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 105 (42.0 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRK 133
S +A ++V L +S K++ + FS +G I++ +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 177
Query: 134 DAEVALQKLQGTA-IGK-QTVRLSSGHNPGNK 163
+AE A++ L G +G + + + +NP K
Sbjct: 178 EAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
Score = 95 (38.5 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D N+ +A+ +NG+ ++ + + A P AS
Sbjct: 69 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 121
Score = 79 (32.9 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 142
IFV L + + L + F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 143 QGTAIGKQTVRLS 155
G +G++ +++S
Sbjct: 346 NGYRLGERVLQVS 358
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 105 (42.0 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRK 133
S +A ++V L +S K++ + FS +G I++ +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 177
Query: 134 DAEVALQKLQGTA-IGK-QTVRLSSGHNPGNK 163
+AE A++ L G +G + + + +NP K
Sbjct: 178 EAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
Score = 95 (38.5 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D N+ +A+ +NG+ ++ + + A P AS
Sbjct: 69 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 121
Score = 79 (32.9 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 142
IFV L + + L + F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 143 QGTAIGKQTVRLS 155
G +G++ +++S
Sbjct: 346 NGYRLGERVLQVS 358
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 105 (42.0 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRK 133
S +A ++V L +S K++ + FS +G I++ +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRI 177
Query: 134 DAEVALQKLQGTA-IGK-QTVRLSSGHNPGNK 163
+AE A++ L G +G + + + +NP K
Sbjct: 178 EAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
Score = 95 (38.5 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D N+ +A+ +NG+ ++ + + A P AS
Sbjct: 69 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 121
Score = 79 (32.9 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 142
IFV L + + L + F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 143 QGTAIGKQTVRLS 155
G +G++ +++S
Sbjct: 346 NGYRLGERVLQVS 358
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 105 (42.0 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRK 133
S +A ++V L +S K++ + FS +G I++ +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRI 177
Query: 134 DAEVALQKLQGTA-IGK-QTVRLSSGHNPGNK 163
+AE A++ L G +G + + + +NP K
Sbjct: 178 EAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
Score = 95 (38.5 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D N+ +A+ +NG+ ++ + + A P AS
Sbjct: 69 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 121
Score = 79 (32.9 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 142
IFV L + + L + F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 143 QGTAIGKQTVRLS 155
G +G++ +++S
Sbjct: 346 NGYRLGERVLQVS 358
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 105 (42.0 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRK 133
S +A ++V L +S K++ + FS +G I++ +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 177
Query: 134 DAEVALQKLQGTA-IGK-QTVRLSSGHNPGNK 163
+AE A++ L G +G + + + +NP K
Sbjct: 178 EAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
Score = 95 (38.5 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D N+ +A+ +NG+ ++ + + A P AS
Sbjct: 69 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS 121
Score = 79 (32.9 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 142
IFV L + + L + F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 143 QGTAIGKQTVRLS 155
G +G++ +++S
Sbjct: 347 NGYRLGERVLQVS 359
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 137 (53.3 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 45/151 (29%), Positives = 74/151 (49%)
Query: 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSS 61
V++ ++KG+GFV F + ++ +RA+ +NG + + G Q+ S
Sbjct: 245 VVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYV---------GRAQKKSE 295
Query: 62 QALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI--- 118
+ L N + +S+N ++V LD +SD+ L+E FS FG + S K+
Sbjct: 296 RETELRVRYEQN-LKEAADKFQSSN--LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD 352
Query: 119 PVG--KGCGFVQFANRKDAEVALQKLQGTAI 147
P G KG GFV FA ++A A+ +L G I
Sbjct: 353 PNGTSKGSGFVAFATPEEATEAMSQLSGKMI 383
Score = 128 (50.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVA 138
S IF+ LD + K L + FS FG I+S K+ V KG GFVQ+AN + A+ A
Sbjct: 121 SGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKA 180
Query: 139 LQKLQGTAIGKQTV 152
++KL G + + V
Sbjct: 181 IEKLNGMLLNDKQV 194
Score = 89 (36.4 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 27/77 (35%), Positives = 37/77 (48%)
Query: 76 RVQGSDGESNNA---TIFVGALDSDVSDKDLREPFSHFGEILS-VKIPVG----KGCGFV 127
R Q D +N ++V L +D DL+ F +G+I S V + G KG GFV
Sbjct: 201 RRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFV 260
Query: 128 QFANRKDAEVALQKLQG 144
F N DA A++ L G
Sbjct: 261 NFENADDAARAVESLNG 277
Score = 79 (32.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 14/44 (31%), Positives = 30/44 (68%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV +DS+ ++KGYGFV++ +E +A+ ++NG+ + + + +
Sbjct: 154 KVAVDSS-GQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
Score = 68 (29.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GYG+V F + + +RA+ E+N + +P+ +
Sbjct: 66 RVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRV 109
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 133 (51.9 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 44/178 (24%), Positives = 83/178 (46%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK-KASGYQQQC 59
+V+ D T R++GYGFV F D ++ +A+ M+G + SR + + A K + S QQQ
Sbjct: 206 RVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQKGQPSIAQQQA 265
Query: 60 SSQALVLAGGPASNG---TR-VQGSDGESNNA-----TIFVGALDSDVSDKDLREPFSHF 110
S + P + T +Q + N T +VG L + D+ F +F
Sbjct: 266 MSAVGMTPTTPFGHHHFPTHGMQSYEMVVNQTPAYQTTCYVGNLTPYTTANDVVPLFQNF 325
Query: 111 GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWRGD 168
G ++ + +G F++ + ++A A+ L G + + ++ S G + + +G+
Sbjct: 326 GYVVESRFQADRGFAFIKMDSHENAAQAICGLNGYNVNGRPLKCSWGKDKNSTNPQGN 383
Score = 126 (49.4 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 137
SN+ IFVG L ++V+D+ L + FS FG + ++ G+ G GFV F +R DAE
Sbjct: 173 SNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEK 232
Query: 138 ALQKLQGTAIGKQTVRLSSGHNPG 161
AL + G +G + +R + + G
Sbjct: 233 ALSSMDGEWLGSRAIRCNWANQKG 256
Score = 66 (28.3 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 18/68 (26%), Positives = 29/68 (42%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
K+I D N + YGFV + D RAM +NG + ++ A S ++ S
Sbjct: 115 KIIPDKNA-KGYNYGFVEYDDPGAADRAMQTLNGRRVHQSEIRVNWAYQAATSATKEDTS 173
Query: 61 SQALVLAG 68
+ + G
Sbjct: 174 NHFHIFVG 181
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 141 (54.7 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 46/164 (28%), Positives = 80/164 (48%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ DS+ ++KG+GFV F +A+ EMNG R ++ + +A Q++
Sbjct: 220 KVMTDSS-GKSKGFGFVSFDSHEAAKKAVEEMNG-----RDINGQLIFVGRA---QKKVE 270
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
QA + R++G G +++ LD + D+ LR FS FG I VK+
Sbjct: 271 RQAELKQMFEQLKRERIRGCQG----VKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ 326
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQ--TVRLSSGH 158
KG G + F++ +DA A+ ++ G +G + ++ L+ H
Sbjct: 327 EEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQRH 370
Score = 101 (40.6 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVAL 139
S +F+ LD + +K L E FS FG+ILS K+ KG FV F N+ A+ A+
Sbjct: 95 SGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAI 154
Query: 140 QKLQG 144
+++ G
Sbjct: 155 EEMNG 159
Score = 96 (38.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVA 138
S +++ D+ D+ L++ FS +G+ LSVK+ KG GFV F + + A+ A
Sbjct: 187 SEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKA 246
Query: 139 LQKLQGTAIGKQTV 152
++++ G I Q +
Sbjct: 247 VEEMNGRDINGQLI 260
Score = 66 (28.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 6 SNTDRTKGYGFVRFGDENERSRAMIEMNG 34
S+ +KGY FV F +++ RA+ EMNG
Sbjct: 131 SDDQGSKGYAFVHFQNQSAADRAIEEMNG 159
Score = 44 (20.5 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMN 33
++ D T R+ GY +V F + +A+ MN
Sbjct: 40 RICRDQVTRRSLGYAYVNFLQLADAQKALDTMN 72
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 144 (55.7 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 43/151 (28%), Positives = 74/151 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV++D N+ R++G+GFV +G+ E +A+ EMNG + R + + A Q++
Sbjct: 221 KVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRA--------QKRIE 271
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
Q + R+ G ++V LD + D LR+ FS +G I S K+
Sbjct: 272 RQGELKRKFEQIKQERINRYQG----VNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMT 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAI 147
KG GFV F++ ++A A+ ++ G +
Sbjct: 328 EGGHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 105 (42.0 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 33/109 (30%), Positives = 52/109 (47%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S +F+ LD + +K L + FS FG+ILS K+ +G GFV F ++ A A
Sbjct: 95 KSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
+Q + G + + V + GH K R + A + T V +NF
Sbjct: 155 IQTMNGMLLNDRKVFV--GHF---KSRRERELEYGAKVMEFTNVYIKNF 198
Score = 103 (41.3 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ D+ DK L+E FS FG LSVK+ + +G GFV + N ++A+ A+ ++
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMN 252
Query: 144 GTAIGKQTV 152
G + + V
Sbjct: 253 GKEVNGRMV 261
Score = 69 (29.3 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D R GYGFV F + +RA+ MNG+ + R + +
Sbjct: 129 KVVCDEYGSR--GYGFVHFETQEAANRAIQTMNGMLLNDRKVFV 170
Score = 59 (25.8 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY ++ F + RA+ MN RP+ I
Sbjct: 41 RVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRI 84
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 131 (51.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 41/167 (24%), Positives = 77/167 (46%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T R++GYGFV F + + +A+ M+G + SR + + A K QQ +
Sbjct: 212 RVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQKGQPSISQQQA 271
Query: 61 SQALVLAG----GPASNGTR-VQGSDG--ESNNA---TIFVGALDSDVSDKDLREPFSHF 110
A+ + G T +Q D + A T +VG L + D+ F +F
Sbjct: 272 MAAMGMTPTTPFGHHHFPTHGIQSYDMVVQQTPAWQTTCYVGNLTPYTTQNDIVPLFQNF 331
Query: 111 GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157
G ++ ++ +G F++ ++A A+ +L G + + ++ S G
Sbjct: 332 GYVIETRMQADRGFAFIKMDTHENAASAICQLNGYNVNGRPLKCSWG 378
Score = 126 (49.4 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 37/112 (33%), Positives = 59/112 (52%)
Query: 70 PASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI-PV----GKGC 124
P S G V+ + E N ++VG LD V++ L++ F G ++SVKI P KG
Sbjct: 73 PTSAGGYVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGA 132
Query: 125 --GFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH--NPGNKQWRGDHINL 172
GFV+F + AE A+Q L G I + +R++ + N NK+ +H ++
Sbjct: 133 NYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHI 184
Score = 123 (48.4 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 137
SN+ IFVG L ++V+D+ L + FS FG + ++ G+ G GFV F R DAE
Sbjct: 179 SNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEK 238
Query: 138 ALQKLQGTAIGKQTVRLSSGHNPG 161
AL + G +G + +R + + G
Sbjct: 239 ALTSMDGEWLGSRAIRCNWANQKG 262
Score = 67 (28.6 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 1 KVIIDSNTDRTKG--YGFVRFGDENERSRAMIEMNG 34
K+I D N + +KG YGFV F D RAM +NG
Sbjct: 120 KIIPDKNFN-SKGANYGFVEFDDPGAAERAMQTLNG 154
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 141 (54.7 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 46/164 (28%), Positives = 80/164 (48%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ DS+ ++KG+GFV F +A+ EMNG R ++ + +A Q++
Sbjct: 278 KVMTDSS-GKSKGFGFVSFDSHEAAKKAVEEMNG-----RDINGQLIFVGRA---QKKVE 328
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
QA + R++G G +++ LD + D+ LR FS FG I VK+
Sbjct: 329 RQAELKQMFEQLKRERIRGCQG----VKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ 384
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQ--TVRLSSGH 158
KG G + F++ +DA A+ ++ G +G + ++ L+ H
Sbjct: 385 EEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQRH 428
Score = 101 (40.6 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVAL 139
S +F+ LD + +K L E FS FG+ILS K+ KG FV F N+ A+ A+
Sbjct: 153 SGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAI 212
Query: 140 QKLQG 144
+++ G
Sbjct: 213 EEMNG 217
Score = 96 (38.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVA 138
S +++ D+ D+ L++ FS +G+ LSVK+ KG GFV F + + A+ A
Sbjct: 245 SEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKA 304
Query: 139 LQKLQGTAIGKQTV 152
++++ G I Q +
Sbjct: 305 VEEMNGRDINGQLI 318
Score = 66 (28.3 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 6 SNTDRTKGYGFVRFGDENERSRAMIEMNG 34
S+ +KGY FV F +++ RA+ EMNG
Sbjct: 189 SDDQGSKGYAFVHFQNQSAADRAIEEMNG 217
Score = 44 (20.5 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMN 33
++ D T R+ GY +V F + +A+ MN
Sbjct: 98 RICRDQVTRRSLGYAYVNFLQLADAQKALDTMN 130
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 142 (55.0 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 43/151 (28%), Positives = 74/151 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV++D +T R++G+GFV +G+ E +A+ EMNG + R + + A Q++
Sbjct: 221 KVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRA--------QKRIE 271
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
Q + R+ G ++V LD + D LR+ FS +G I S K+
Sbjct: 272 RQGELKRKFEQIKQERINRYQG----VNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMT 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAI 147
KG GFV F++ ++A A+ ++ G +
Sbjct: 328 EGGHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 106 (42.4 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ D+ DK LRE FS FG LSVK+ + +G GFV + N ++A+ A+ ++
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMN 252
Query: 144 GTAIGKQTV 152
G + + +
Sbjct: 253 GKEVNGRMI 261
Score = 103 (41.3 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 33/109 (30%), Positives = 51/109 (46%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S +F+ LD + +K L + FS FG ILS K+ +G GFV F ++ A A
Sbjct: 95 KSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
+Q + G + + V + GH K R + A + T V +NF
Sbjct: 155 IQTMNGMLLNDRKVFV--GHF---KSRRERELEYGAKVMEFTNVYIKNF 198
Score = 72 (30.4 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D + R GYGFV F + +RA+ MNG+ + R + +
Sbjct: 129 KVVCDEHGSR--GYGFVHFETQEAANRAIQTMNGMLLNDRKVFV 170
Score = 59 (25.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY ++ F + RA+ MN RP+ I
Sbjct: 41 RVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRI 84
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 141 (54.7 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 46/154 (29%), Positives = 77/154 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV + + ++A+ EMNG S + SI V +K Q +
Sbjct: 150 KVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGK--SIFVGRAQKKVERQAELK 206
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ L S R QG +++ LD + D+ LR+ FS FG I S K+ +
Sbjct: 207 RKFEQLKQERIS---RYQG-------VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML 256
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQ 150
KG GFV F++ ++A A+ ++ G +G +
Sbjct: 257 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 290
Score = 104 (41.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIP-----VGKGCGFVQFANRKDAEVALQKLQ 143
+++ +V D++LRE FS FG+ LSVK+ KG GFV + +DA A++++
Sbjct: 122 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 181
Query: 144 GTAIGKQTV 152
G + +++
Sbjct: 182 GKEMSGKSI 190
Score = 71 (30.1 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGY FV F + ++A+ +MNG+ + R + +
Sbjct: 58 KVVCDENG--SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFV 99
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 43/154 (27%), Positives = 76/154 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D T ++KG+GFV F + ++A+ EMNG + + + + A Q++
Sbjct: 221 KVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRA--------QKKVE 271
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
QA + R+ G +++ LD + D+ LR+ FS FG I S K+ +
Sbjct: 272 RQAELKRRFEQLKQERISRYQG----VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQ 150
KG GFV F++ ++A A+ ++ G +G +
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 361
Score = 109 (43.4 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKI---PVGK--GCGFVQFANRKDAEVALQKLQ 143
+++ D+ D+ L+E FS +G+ LSVK+ P GK G GFV F +DA A++++
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 144 GTAI-GK 149
G I GK
Sbjct: 253 GKDINGK 259
Score = 105 (42.0 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 33/109 (30%), Positives = 53/109 (48%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S +F+ LD + +K L + FS FG ILS K+ KG FV F + A+ A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
++K+ G + + V + G K+ + L A A++ T V +NF
Sbjct: 155 IEKMNGMLLNDRKVFV--GRFKSRKEREAE---LGAKAKEFTNVYIKNF 198
Score = 74 (31.1 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGY FV F ++ RA+ +MNG+ + R + +
Sbjct: 129 KVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY +V F + RA+ MN +P+ I
Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRI 84
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 46/154 (29%), Positives = 77/154 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV + + ++A+ EMNG S + SI V +K Q +
Sbjct: 221 KVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGK--SIFVGRAQKKVERQAELK 277
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ L S R QG +++ LD + D+ LR+ FS FG I S K+ +
Sbjct: 278 RKFEQLKQERIS---RYQG-------VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQ 150
KG GFV F++ ++A A+ ++ G +G +
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 361
Score = 106 (42.4 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 33/109 (30%), Positives = 53/109 (48%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S +F+ LD + +K L + FS FG ILS K+ KG FV F ++ A A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
++K+ G + + V + G K+ + L A A++ T V +NF
Sbjct: 155 IEKMNGMLLNDRKVFV--GRFKSRKEREAE---LGAKAKEFTNVYIKNF 198
Score = 104 (41.7 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIP-----VGKGCGFVQFANRKDAEVALQKLQ 143
+++ +V D++LRE FS FG+ LSVK+ KG GFV + +DA A++++
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 144 GTAIGKQTV 152
G + +++
Sbjct: 253 GKEMSGKSI 261
Score = 71 (30.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGY FV F + ++A+ +MNG+ + R + +
Sbjct: 129 KVVCDENG--SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY +V F + RA+ MN +P+ I
Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRI 84
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 44/151 (29%), Positives = 74/151 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV++D +T R+KG+GFV F E +A+ +MNG + R + + A Q++
Sbjct: 221 KVMMD-HTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRA--------QKRLE 271
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
Q+ + RV G ++V LD + D+ LR+ FS +G I S K+
Sbjct: 272 RQSELKRKFEQMKQERVSRYQG----VNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMT 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAI 147
KG GFV F++ ++A A+ ++ G +
Sbjct: 328 EGGHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 106 (42.4 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 33/109 (30%), Positives = 52/109 (47%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S +F+ LD + +K L + FS FG ILS K+ +G GFV F ++ A A
Sbjct: 95 KSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGHGFVHFETQEAATRA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
+Q + G + + V + GH K+ + A A + T V +NF
Sbjct: 155 IQTMNGMLLNDRKVFV--GHFKSRKEREAE---FGARAMEFTNVYIKNF 198
Score = 102 (41.0 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ D+ D LRE FS FG+ LSVK+ + KG GFV F ++A+ A+ +
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMN 252
Query: 144 GTAIGKQTV 152
G I + V
Sbjct: 253 GKEINGRMV 261
Score = 72 (30.4 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N R G+GFV F + +RA+ MNG+ + R + +
Sbjct: 129 KVVCDENGSR--GHGFVHFETQEAATRAIQTMNGMLLNDRKVFV 170
Score = 55 (24.4 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D + R+ GY ++ F + RA+ MN RP+ I
Sbjct: 41 RVCRDVASRRSLGYAYINFQQPADAERALDTMNFEVIKGRPVRI 84
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 112 (44.5 bits), Expect = 0.00035, P = 0.00035
Identities = 32/124 (25%), Positives = 61/124 (49%)
Query: 72 SNGTRVQGSDGESNNAT-IFVGALDSDVSDKDLREPFSHFGEILSVKIPVGK------GC 124
+N T ++ E + T + V L +S ++R F FGE+ S K+ K G
Sbjct: 94 NNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGY 153
Query: 125 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNN 184
GFV + ++DAE A+ L G + +T+++S P ++ +G ++ + L ++ T +
Sbjct: 154 GFVNYVKQEDAEKAINALNGLRLQNKTIKVSIAR-PSSESIKGANLYVSGLPKNMTQSDL 212
Query: 185 RNFF 188
+ F
Sbjct: 213 ESLF 216
Score = 109 (43.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 34/99 (34%), Positives = 51/99 (51%)
Query: 72 SNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCG 125
+NG +QG+ S+ IFV L D + L + F FG + SVK+ KG G
Sbjct: 347 TNGM-IQGNTIASSGWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFG 405
Query: 126 FVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164
FV N ++A +A+Q L G +G + +++S N NKQ
Sbjct: 406 FVTMTNYEEAVLAIQSLNGYTLGNRVLQVSFKTNK-NKQ 443
Score = 91 (37.1 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 26/91 (28%), Positives = 47/91 (51%)
Query: 87 ATIFVGALDSDVSDKDLREPFSHFGEILSVKI-----------PVGKGCGFVQFANRKDA 135
A ++V L +++ DL FS +G+I++ +I + KG GF++F R +A
Sbjct: 196 ANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEA 255
Query: 136 EVALQKLQGTAIGKQT--VRLSSGHNPG-NK 163
+ A+++L GT T + + +NP NK
Sbjct: 256 DRAIKELNGTTPKNSTEPITVKFANNPSSNK 286
Score = 82 (33.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K+I D T ++ GYGFV + + + +A+ +NG+ ++ + + +A P S
Sbjct: 140 KLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSES 192
Score = 66 (28.3 bits), Expect = 5.1e-07, Sum P(2) = 5.1e-07
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 11 TKGYGFVRFGDENERSRAMIEMNGVYC--SSRPMSIDVA 47
+KG GF+RF E RA+ E+NG S+ P+++ A
Sbjct: 241 SKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFA 279
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 141 (54.7 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 46/154 (29%), Positives = 77/154 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV + + ++A+ EMNG S + SI V +K Q +
Sbjct: 221 KVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGK--SIFVGRAQKKVERQAELK 277
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ L S R QG +++ LD + D+ LR+ FS FG I S K+ +
Sbjct: 278 RKFEQLKQERIS---RYQG-------VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQ 150
KG GFV F++ ++A A+ ++ G +G +
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 361
Score = 106 (42.4 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 33/109 (30%), Positives = 53/109 (48%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S +F+ LD + +K L + FS FG ILS K+ KG FV F ++ A A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
++K+ G + + V + G K+ + L A A++ T V +NF
Sbjct: 155 IEKMNGMLLNDRKVFV--GRFKSRKEREAE---LGAKAKEFTNVYIKNF 198
Score = 104 (41.7 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIP-----VGKGCGFVQFANRKDAEVALQKLQ 143
+++ +V D++LRE FS FG+ LSVK+ KG GFV + +DA A++++
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 144 GTAIGKQTV 152
G + +++
Sbjct: 253 GKEMSGKSI 261
Score = 71 (30.1 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGY FV F + ++A+ +MNG+ + R + +
Sbjct: 129 KVVCDENG--SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY +V F + RA+ MN +P+ I
Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRI 84
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 102 (41.0 bits), Expect = 0.00091, P = 0.00091
Identities = 33/124 (26%), Positives = 58/124 (46%)
Query: 67 AGGPAS--NG--TRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGK 122
A GP + N + V + E + + V L +++ ++L+ F GEI S K+ K
Sbjct: 15 ANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDK 74
Query: 123 ------GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALA 176
G GFV + + KDAE A+ L G + +T+++S P + R ++ + L
Sbjct: 75 ITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIRDANLYVSGLP 133
Query: 177 QDAT 180
+ T
Sbjct: 134 KTMT 137
Score = 95 (38.5 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 134 DAEVALQKLQG 144
+AE A++ L G
Sbjct: 178 EAEEAIKGLNG 188
Score = 85 (35.0 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121
>TAIR|locus:2025077 [details] [associations]
symbol:MAC5A "MOS4-associated complex subunit 5A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IGI] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0042742 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872
ProtClustDB:CLSN2913258 EMBL:AC022464 EMBL:AY054519 EMBL:AY114632
IPI:IPI00518267 PIR:F86208 RefSeq:NP_563788.1 UniGene:At.25418
HSSP:P18615 ProteinModelPortal:Q9LNV5 SMR:Q9LNV5 IntAct:Q9LNV5
STRING:Q9LNV5 PaxDb:Q9LNV5 PRIDE:Q9LNV5 EnsemblPlants:AT1G07360.1
GeneID:837248 KEGG:ath:AT1G07360 TAIR:At1g07360 InParanoid:Q9LNV5
OMA:ILADKAC PhylomeDB:Q9LNV5 Genevestigator:Q9LNV5 Uniprot:Q9LNV5
Length = 481
Score = 140 (54.3 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 35/96 (36%), Positives = 55/96 (57%)
Query: 63 ALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGK 122
A+ L G GT ++ D ES T++VG L+S + ++D+R+ F GEI S++I K
Sbjct: 206 AMKLLGKAGEMGT-LESPDDESIK-TLYVGGLNSRILEQDIRDQFYAHGEIESIRILADK 263
Query: 123 GCGFVQFANRKDAEVALQKLQGT-AIGKQTVRLSSG 157
C FV + +R+ AE A Q+L I Q ++L+ G
Sbjct: 264 ACAFVTYTSREGAEKAAQELSNRLVINGQRLKLTWG 299
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 109 (43.4 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKI---PVGK--GCGFVQFANRKDAEVALQKLQ 143
+++ +V D+ L+E FS FG+ LSVK+ P GK G GFV + +DA A++++
Sbjct: 106 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 165
Query: 144 GTAI-GK 149
G I GK
Sbjct: 166 GKEISGK 172
Score = 65 (27.9 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
V+ D N +KGY FV F + +A+ +MNG+ + R + +
Sbjct: 43 VVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 83
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 102 (41.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 123 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 182
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 183 EAEEAIKGLNGQKPSGATEPITVKFANNPSQK 214
Score = 85 (35.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 74 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 126
Score = 84 (34.6 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 28/96 (29%), Positives = 43/96 (44%)
Query: 74 GTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFV 127
G + G G IFV L D + L + F FG + +VK+ KG GFV
Sbjct: 257 GMNIPGHTG--TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFV 314
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
N +A +A+ L G +G + +++S N +K
Sbjct: 315 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 350
Score = 70 (29.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG S I V K + Q S
Sbjct: 160 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV----KFANNPSQKS 215
Query: 61 SQALV 65
SQAL+
Sbjct: 216 SQALL 220
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 124 (48.7 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 31/80 (38%), Positives = 43/80 (53%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVA 138
S IF+ LD+ + +K L E FS FG ILS K+ + KG GFVQF + A+ A
Sbjct: 133 SGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAA 192
Query: 139 LQKLQGTAIGKQTVRLSSGH 158
+ KL G + + V + GH
Sbjct: 193 IDKLNGMLMNDKQVFV--GH 210
Score = 124 (48.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 39/159 (24%), Positives = 79/159 (49%)
Query: 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSS 61
V++ + ++ +GFV F + A+ +MNG+ + + A +K S +++
Sbjct: 259 VVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRA--QKKSEREEELRR 316
Query: 62 QALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI--- 118
+ R+ + +S A +++ LD V D+ L+E FS +G + S K+
Sbjct: 317 KF---------EQERINRFE-KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLN 366
Query: 119 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155
P G +G GFV ++N ++A AL ++ G IG++ + ++
Sbjct: 367 PQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIA 405
Score = 63 (27.2 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D N R+ GY ++ F + N+ RAM +N RP+ I
Sbjct: 79 RVCRDQNR-RSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRI 121
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 140 (54.3 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 43/154 (27%), Positives = 76/154 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D N ++KG+GFV + + ++A+ EMNG S + + + A Q++
Sbjct: 123 KVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA--------QKKVE 173
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
QA + R+ G +++ LD + D+ LR+ FS FG I S K+ +
Sbjct: 174 RQAELKRKFEQLKQERISRYQG----VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML 229
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQ 150
KG GFV F++ ++A A+ ++ G +G +
Sbjct: 230 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 263
Score = 109 (43.4 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKI---PVGK--GCGFVQFANRKDAEVALQKLQ 143
+++ +V D+ L+E FS FG+ LSVK+ P GK G GFV + +DA A++++
Sbjct: 95 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 154
Query: 144 GTAI-GK 149
G I GK
Sbjct: 155 GKEISGK 161
Score = 70 (29.7 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGY FV F + +A+ +MNG+ + R + +
Sbjct: 31 KVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 72
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 102 (41.0 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 125 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 184
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 185 EAEEAIKGLNGQKPSGATEPITVKFANNPSQK 216
Score = 85 (35.0 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 76 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 128
Score = 84 (34.6 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 28/96 (29%), Positives = 43/96 (44%)
Query: 74 GTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFV 127
G + G G IFV L D + L + F FG + +VK+ KG GFV
Sbjct: 272 GMNIPGHTG--TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFV 329
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
N +A +A+ L G +G + +++S N +K
Sbjct: 330 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 365
Score = 70 (29.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG S I V K + Q S
Sbjct: 162 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV----KFANNPSQKS 217
Query: 61 SQALV 65
SQAL+
Sbjct: 218 SQALL 222
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 102 (41.0 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 125 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 184
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 185 EAEEAIKGLNGQKPSGATEPITVKFANNPSQK 216
Score = 85 (35.0 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 76 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 128
Score = 84 (34.6 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 28/96 (29%), Positives = 43/96 (44%)
Query: 74 GTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFV 127
G + G G IFV L D + L + F FG + +VK+ KG GFV
Sbjct: 272 GMNIPGHTG--TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFV 329
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
N +A +A+ L G +G + +++S N +K
Sbjct: 330 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 365
Score = 70 (29.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG S I V K + Q S
Sbjct: 162 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV----KFANNPSQKS 217
Query: 61 SQALV 65
SQAL+
Sbjct: 218 SQALL 222
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 102 (41.0 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 130 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 189
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 190 EAEEAIKGLNGQKPSGATEPITVKFANNPSQK 221
Score = 85 (35.0 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 81 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 133
Score = 84 (34.6 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 28/96 (29%), Positives = 43/96 (44%)
Query: 74 GTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFV 127
G + G G IFV L D + L + F FG + +VK+ KG GFV
Sbjct: 277 GMNIPGHTG--TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFV 334
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
N +A +A+ L G +G + +++S N +K
Sbjct: 335 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 370
Score = 70 (29.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG S I V K + Q S
Sbjct: 167 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV----KFANNPSQKS 222
Query: 61 SQALV 65
SQAL+
Sbjct: 223 SQALL 227
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 102 (41.0 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 130 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 189
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 190 EAEEAIKGLNGQKPSGATEPITVKFANNPSQK 221
Score = 85 (35.0 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 81 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 133
Score = 82 (33.9 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 28/96 (29%), Positives = 43/96 (44%)
Query: 74 GTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFV 127
G + G G IFV L D + L + F FG + +VK+ KG GFV
Sbjct: 277 GMNIPGHTG--TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFV 334
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
N +A +A+ L G +G + +++S N +K
Sbjct: 335 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 370
Score = 67 (28.6 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG S I V K + Q +
Sbjct: 167 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV----KFANNPSQKT 222
Query: 61 SQALV 65
SQAL+
Sbjct: 223 SQALL 227
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 136 (52.9 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 45/175 (25%), Positives = 78/175 (44%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNG-------VYCSSRPMSIDVATPKKAS 53
KV+ D + ++KG+GFV F + +A+ EMNG +Y ++ T K
Sbjct: 221 KVMTDES-GKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHK 279
Query: 54 GYQQQCSSQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEI 113
Q + + P R QG ++V LD + D+ LR+ FS FG I
Sbjct: 280 FGQMKQDKPKIEQV--PQDRSVRCQG-------VNLYVKNLDDGIDDERLRKEFSPFGTI 330
Query: 114 LSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164
S K+ + KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 331 TSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 385
Score = 115 (45.5 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 28/74 (37%), Positives = 40/74 (54%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S IFV LD + K L + FS FG ILS K+ KG GFV F +++AE A
Sbjct: 95 KSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEEAERA 154
Query: 139 LQKLQGTAIGKQTV 152
++K+ G + + V
Sbjct: 155 IEKMNGMFLNDRKV 168
Score = 104 (41.7 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ L D+ D+ L++ FS FG LSVK+ KG GFV F +DA A+ ++
Sbjct: 193 VYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMN 252
Query: 144 GTAI-GKQ 150
G + GKQ
Sbjct: 253 GKDLNGKQ 260
Score = 89 (36.4 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGYGFV F + E RA+ +MNG++ + R + +
Sbjct: 129 KVVCDENG--SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFV 170
Score = 54 (24.1 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY V F + RA+ MN +P+ I
Sbjct: 41 RVYRDRTTRRSLGYASVNFQQLEDAERALDTMNFDVIKGKPVRI 84
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 102 (41.0 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 177
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 178 EAEEAIKGLNGQKPSGATEPITVKFANNPSQK 209
Score = 85 (35.0 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121
Score = 84 (34.6 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 28/96 (29%), Positives = 43/96 (44%)
Query: 74 GTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFV 127
G + G G IFV L D + L + F FG + +VK+ KG GFV
Sbjct: 279 GMNIPGHTG--TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFV 336
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
N +A +A+ L G +G + +++S N +K
Sbjct: 337 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 372
Score = 70 (29.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG S I V K + Q S
Sbjct: 155 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV----KFANNPSQKS 210
Query: 61 SQALV 65
SQAL+
Sbjct: 211 SQALL 215
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 102 (41.0 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 177
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 178 EAEEAIKGLNGQKPSGATEPITVKFANNPSQK 209
Score = 85 (35.0 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121
Score = 84 (34.6 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 28/96 (29%), Positives = 43/96 (44%)
Query: 74 GTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFV 127
G + G G IFV L D + L + F FG + +VK+ KG GFV
Sbjct: 279 GMNIPGHTG--TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFV 336
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
N +A +A+ L G +G + +++S N +K
Sbjct: 337 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 372
Score = 70 (29.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG S I V K + Q S
Sbjct: 155 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV----KFANNPSQKS 210
Query: 61 SQALV 65
SQAL+
Sbjct: 211 SQALL 215
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 140 (54.3 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 43/154 (27%), Positives = 76/154 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D N ++KG+GFV + + ++A+ EMNG S + + + A Q++
Sbjct: 221 KVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA--------QKKVE 271
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
QA + R+ G +++ LD + D+ LR+ FS FG I S K+ +
Sbjct: 272 RQAELKRKFEQLKQERISRYQG----VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQ 150
KG GFV F++ ++A A+ ++ G +G +
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 361
Score = 109 (43.4 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKI---PVGK--GCGFVQFANRKDAEVALQKLQ 143
+++ +V D+ L+E FS FG+ LSVK+ P GK G GFV + +DA A++++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 144 GTAI-GK 149
G I GK
Sbjct: 253 GKEISGK 259
Score = 108 (43.1 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 33/109 (30%), Positives = 54/109 (49%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S +F+ LD + +K L + FS FG ILS K+ KG FV F ++ A+ A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
++K+ G + + V + G K+ + L A A++ T V +NF
Sbjct: 155 IEKMNGMLLNDRKVFV--GRFKSRKEREAE---LGAKAKEFTNVYIKNF 198
Score = 70 (29.7 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGY FV F + +A+ +MNG+ + R + +
Sbjct: 129 KVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY +V F + RA+ MN +P+ I
Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRI 84
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 102 (41.0 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 125 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 184
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 185 EAEEAIKGLNGQKPSGATEPITVKFANNPSQK 216
Score = 85 (35.0 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 76 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 128
Score = 84 (34.6 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 28/96 (29%), Positives = 43/96 (44%)
Query: 74 GTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFV 127
G + G G IFV L D + L + F FG + +VK+ KG GFV
Sbjct: 286 GMNIPGHTG--TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFV 343
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
N +A +A+ L G +G + +++S N +K
Sbjct: 344 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 379
Score = 70 (29.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG S I V K + Q S
Sbjct: 162 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV----KFANNPSQKS 217
Query: 61 SQALV 65
SQAL+
Sbjct: 218 SQALL 222
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 102 (41.0 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 125 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 184
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 185 EAEEAIKGLNGQKPSGATEPITVKFANNPSQK 216
Score = 85 (35.0 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 76 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 128
Score = 84 (34.6 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 28/96 (29%), Positives = 43/96 (44%)
Query: 74 GTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFV 127
G + G G IFV L D + L + F FG + +VK+ KG GFV
Sbjct: 286 GMNIPGHTG--TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFV 343
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
N +A +A+ L G +G + +++S N +K
Sbjct: 344 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 379
Score = 70 (29.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG S I V K + Q S
Sbjct: 162 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV----KFANNPSQKS 217
Query: 61 SQALV 65
SQAL+
Sbjct: 218 SQALL 222
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 140 (54.3 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 43/154 (27%), Positives = 77/154 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D T +++G+GFV + + ++A+ EMNG + + ++ V +K Q +
Sbjct: 222 KVMTDP-TGKSRGFGFVSYEKHEDANKAVEEMNGTELNGK--TVFVGRAQKKMERQAELK 278
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ L S R QG +++ LD + D+ LR+ FS FG I S K+ +
Sbjct: 279 RKFEQLKQERIS---RYQG-------VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML 328
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQ 150
KG GFV F++ ++A A+ ++ G +G +
Sbjct: 329 EEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 362
Score = 113 (44.8 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKI---PVGK--GCGFVQFANRKDAEVALQKLQ 143
+++ D+ D+ L+E F +G+ LSVK+ P GK G GFV + +DA A++++
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMN 253
Query: 144 GTAIGKQTV 152
GT + +TV
Sbjct: 254 GTELNGKTV 262
Score = 103 (41.3 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 32/109 (29%), Positives = 53/109 (48%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S +F+ LD + +K L + FS FG ILS K+ KG FV F + A+ A
Sbjct: 96 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRA 155
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
++K+ G + + V + G K+ + + A A++ T V +NF
Sbjct: 156 IEKMNGMLLNDRKVFV--GRFKSRKEREAE---MGAKAKEFTNVYIKNF 199
Score = 74 (31.1 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGY FV F ++ RA+ +MNG+ + R + +
Sbjct: 130 KVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 171
Score = 56 (24.8 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY +V F + RA+ MN +P+ I
Sbjct: 42 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVVKGKPIRI 85
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 102 (41.0 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 141 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 200
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 201 EAEEAIKGLNGQKPSGATEPITVKFANNPSQK 232
Score = 85 (35.0 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 92 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 144
Score = 84 (34.6 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 28/96 (29%), Positives = 43/96 (44%)
Query: 74 GTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFV 127
G + G G IFV L D + L + F FG + +VK+ KG GFV
Sbjct: 288 GMNIPGHTG--TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFV 345
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
N +A +A+ L G +G + +++S N +K
Sbjct: 346 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 381
Score = 70 (29.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG S I V K + Q S
Sbjct: 178 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV----KFANNPSQKS 233
Query: 61 SQALV 65
SQAL+
Sbjct: 234 SQALL 238
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 140 (54.3 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 43/154 (27%), Positives = 76/154 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D N ++KG+GFV + + ++A+ EMNG S + + + A Q++
Sbjct: 221 KVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA--------QKKVE 271
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
QA + R+ G +++ LD + D+ LR+ FS FG I S K+ +
Sbjct: 272 RQAELKRKFEQLKQERISRYQG----VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQ 150
KG GFV F++ ++A A+ ++ G +G +
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 361
Score = 109 (43.4 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKI---PVGK--GCGFVQFANRKDAEVALQKLQ 143
+++ +V D+ L+E FS FG+ LSVK+ P GK G GFV + +DA A++++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 144 GTAI-GK 149
G I GK
Sbjct: 253 GKEISGK 259
Score = 108 (43.1 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 33/109 (30%), Positives = 54/109 (49%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S +F+ LD + +K L + FS FG ILS K+ KG FV F ++ A+ A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
++K+ G + + V + G K+ + L A A++ T V +NF
Sbjct: 155 IEKMNGMLLNDRKVFV--GRFKSRKEREAE---LGAKAKEFTNVYIKNF 198
Score = 70 (29.7 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGY FV F + +A+ +MNG+ + R + +
Sbjct: 129 KVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY +V F + RA+ MN +P+ I
Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRI 84
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 102 (41.0 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 129 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 188
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 189 EAEEAIKGLNGQKPSGATEPITVKFANNPSQK 220
Score = 85 (35.0 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 80 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 132
Score = 84 (34.6 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 28/96 (29%), Positives = 43/96 (44%)
Query: 74 GTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFV 127
G + G G IFV L D + L + F FG + +VK+ KG GFV
Sbjct: 290 GMNIPGHTG--TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFV 347
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
N +A +A+ L G +G + +++S N +K
Sbjct: 348 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 383
Score = 70 (29.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG S I V K + Q S
Sbjct: 166 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV----KFANNPSQKS 221
Query: 61 SQALV 65
SQAL+
Sbjct: 222 SQALL 226
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 102 (41.0 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 130 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 189
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 190 EAEEAIKGLNGQKPSGATEPITVKFANNPSQK 221
Score = 85 (35.0 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 81 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 133
Score = 84 (34.6 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 28/96 (29%), Positives = 43/96 (44%)
Query: 74 GTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFV 127
G + G G IFV L D + L + F FG + +VK+ KG GFV
Sbjct: 291 GMNIPGHTG--TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFV 348
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
N +A +A+ L G +G + +++S N +K
Sbjct: 349 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 384
Score = 70 (29.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG S I V K + Q S
Sbjct: 167 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV----KFANNPSQKS 222
Query: 61 SQALV 65
SQAL+
Sbjct: 223 SQALL 227
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 102 (41.0 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 130 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 189
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 190 EAEEAIKGLNGQKPSGATEPITVKFANNPSQK 221
Score = 85 (35.0 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 81 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 133
Score = 84 (34.6 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 28/96 (29%), Positives = 43/96 (44%)
Query: 74 GTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFV 127
G + G G IFV L D + L + F FG + +VK+ KG GFV
Sbjct: 291 GMNIPGHTG--TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFV 348
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
N +A +A+ L G +G + +++S N +K
Sbjct: 349 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 384
Score = 70 (29.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG S I V K + Q S
Sbjct: 167 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV----KFANNPSQKS 222
Query: 61 SQALV 65
SQAL+
Sbjct: 223 SQALL 227
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 101 (40.6 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 25/92 (27%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 146 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRI 205
Query: 134 DAEVALQKLQGTA--IGKQTVRLSSGHNPGNK 163
+AE A++ L G + + + +NP K
Sbjct: 206 EAEEAIKGLNGQKPPAATEPITVKFANNPSQK 237
Score = 86 (35.3 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 97 KLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 149
Score = 85 (35.0 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 29/106 (27%), Positives = 47/106 (44%)
Query: 64 LVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-- 121
+ + G + G + G G IFV L D + L + F FG + +VK+
Sbjct: 284 MTIDGMTSLAGINIPGHAG--TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFN 341
Query: 122 ----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
KG GFV N +A +A+ L G +G + +++S N +K
Sbjct: 342 TNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 387
Score = 71 (30.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG P + + T K A+ Q+ +
Sbjct: 183 RILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNG---QKPPAATEPITVKFANNPSQK-T 238
Query: 61 SQALV 65
+QA++
Sbjct: 239 NQAIL 243
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 104 (41.7 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS FG I++ +I V +G GF++F R
Sbjct: 147 SSASIRDANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRV 206
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 207 EAEEAIKGLNGQKPPGATEPITVKFANNPSQK 238
Score = 86 (35.3 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 26/81 (32%), Positives = 39/81 (48%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 142
IFV L D + L + F FG + +VK+ KG GFV N +A VA+ L
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 143 QGTAIGKQTVRLSSGHNPGNK 163
G +G + +++S N +K
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 82 (33.9 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + + + +A+ +NG+ ++ + + A P AS
Sbjct: 98 KLVRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 150
Score = 74 (31.1 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG P + + T K A+ Q+ S
Sbjct: 184 RILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNG---QKPPGATEPITVKFANNPSQK-S 239
Query: 61 SQALV 65
SQAL+
Sbjct: 240 SQALL 244
>UNIPROTKB|E5RGH3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00983093
ProteinModelPortal:E5RGH3 SMR:E5RGH3 Ensembl:ENST00000518196
ArrayExpress:E5RGH3 Bgee:E5RGH3 Uniprot:E5RGH3
Length = 108
Score = 91 (37.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAE 136
+S IF+ LD + +K L + FS FG ILS K+ KG GFV F ++ AE
Sbjct: 50 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAE 107
Score = 52 (23.4 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 8 TDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
T R+ GY +V F + RA+ MN +P+ I
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 39
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 138 (53.6 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 43/169 (25%), Positives = 83/169 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KVI DS+ ++KG+GFVR+ +A+++++G + + + A K + +
Sbjct: 229 KVIRDSS-GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRR 287
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ L L +R G I++ LD + D+ L+E FS FG I K+ V
Sbjct: 288 FERLRL-----KEKSRPPG-------VPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMV 335
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQW 165
GKG G + F++ ++A A+ ++ G +G + ++++ G ++W
Sbjct: 336 EVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQ--ARRRW 382
Score = 89 (36.4 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 28/86 (32%), Positives = 42/86 (48%)
Query: 70 PASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI---PVGK--GC 124
P V+ D ++ +FV D+ D L+E FS +G SVK+ GK G
Sbjct: 183 PEERAAEVRTRD-KATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGF 241
Query: 125 GFVQFANRKDAEVALQKLQGTAI-GK 149
GFV++ + A+ A+ L G +I GK
Sbjct: 242 GFVRYETHEAAQKAVLDLHGKSIDGK 267
Score = 68 (29.0 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGY +V F +RA+ MNGV ++R + +
Sbjct: 136 KVVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 138 (53.6 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 43/161 (26%), Positives = 80/161 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KVI D++ ++KG+GFVR+ +A+++++G + + + + A K + +
Sbjct: 229 KVIRDAS-GKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRR 287
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ L L +R G I++ LD + D+ L+E FS FG I K+ V
Sbjct: 288 FERLRL-----KEKSRPPG-------VPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMV 335
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157
GKG G V F++ +DA A+ ++ G +G + + ++ G
Sbjct: 336 EVGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLG 376
Score = 89 (36.4 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 70 PASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI---PVGK--GC 124
P V+ D + +FV +D+ D+ L+E FS +G SVK+ GK G
Sbjct: 183 PEERAAEVRTRD-RATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGF 241
Query: 125 GFVQFANRKDAEVALQKLQGTAI-GK 149
GFV++ + A+ A+ L G +I GK
Sbjct: 242 GFVRYETHEAAQKAVLDLHGKSINGK 267
Score = 68 (29.0 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGY +V F +RA+ MNGV ++R + +
Sbjct: 136 KVVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 99 (39.9 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
Score = 86 (35.3 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 29/106 (27%), Positives = 47/106 (44%)
Query: 64 LVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-- 121
+ + G + G + G G IFV L D + L + F FG + +VK+
Sbjct: 242 MTIDGMTSLAGINIPGHPG--TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFN 299
Query: 122 ----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
KG GFV N +A +A+ L G +G + +++S N +K
Sbjct: 300 TNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 345
Score = 85 (35.0 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121
Score = 67 (28.6 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG P + + T K A+ Q+ +
Sbjct: 155 RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG---QKPPGATEPITVKFANNPSQK-T 210
Query: 61 SQALV 65
+QA++
Sbjct: 211 NQAIL 215
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 139 (54.0 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 45/152 (29%), Positives = 75/152 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D ++ ++G+GFV F E +A+++MNG S R + + A +K Q +
Sbjct: 221 KVMRD-DSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRA--QKRVERQSELK 277
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ L TR QG ++V LD + D+ LR+ FS +G I S K+
Sbjct: 278 RRFEQLK---QDRLTRYQG-------VNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIG 148
KG GFV F++ ++A A+ ++ G +G
Sbjct: 328 EGGHSKGFGFVCFSSPEEATKAVTEMNGRILG 359
Score = 101 (40.6 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 34/108 (31%), Positives = 51/108 (47%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S IF+ L+ + +K L + FS FG ILS K+ +G GFV F + A+ A
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQQA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDAT--YVNN 184
+ + G + + V + GH K R + L A A + T YV N
Sbjct: 155 ITTMNGMLLNDRKVFV--GHF---KSRREREVELGARAMEFTNIYVKN 197
Score = 94 (38.1 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKI---PVG--KGCGFVQFANRKDAEVALQKLQ 143
I+V L DV ++ L++ FS FG++LSVK+ G +G GFV F ++A+ A+ +
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMN 252
Query: 144 GTAI 147
G +
Sbjct: 253 GKEV 256
Score = 63 (27.2 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D + R G+GFV F +A+ MNG+ + R + +
Sbjct: 129 KVVCDDHGSR--GFGFVHFETHEAAQQAITTMNGMLLNDRKVFV 170
Score = 55 (24.4 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY ++ F + RA+ MN +P+ I
Sbjct: 41 RVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRI 84
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 99 (39.9 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
Score = 86 (35.3 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 29/106 (27%), Positives = 47/106 (44%)
Query: 64 LVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-- 121
+ + G + G + G G IFV L D + L + F FG + +VK+
Sbjct: 255 MTIDGMTSLAGINIPGHPG--TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFN 312
Query: 122 ----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
KG GFV N +A +A+ L G +G + +++S N +K
Sbjct: 313 TNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 358
Score = 85 (35.0 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121
Score = 67 (28.6 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG P + + T K A+ Q+ +
Sbjct: 155 RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG---QKPPGATEPITVKFANNPSQK-T 210
Query: 61 SQALV 65
+QA++
Sbjct: 211 NQAIL 215
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 99 (39.9 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
Score = 86 (35.3 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 29/106 (27%), Positives = 47/106 (44%)
Query: 64 LVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-- 121
+ + G + G + G G IFV L D + L + F FG + +VK+
Sbjct: 255 MTIDGMTSLAGINIPGHPG--TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFN 312
Query: 122 ----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
KG GFV N +A +A+ L G +G + +++S N +K
Sbjct: 313 TNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 358
Score = 85 (35.0 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121
Score = 67 (28.6 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG P + + T K A+ Q+ +
Sbjct: 155 RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG---QKPPGATEPITVKFANNPSQK-T 210
Query: 61 SQALV 65
+QA++
Sbjct: 211 NQAIL 215
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 99 (39.9 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
Score = 86 (35.3 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 29/106 (27%), Positives = 47/106 (44%)
Query: 64 LVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-- 121
+ + G + G + G G IFV L D + L + F FG + +VK+
Sbjct: 255 MTIDGMTSLAGINIPGHPG--TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFN 312
Query: 122 ----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
KG GFV N +A +A+ L G +G + +++S N +K
Sbjct: 313 TNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 358
Score = 85 (35.0 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121
Score = 67 (28.6 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG P + + T K A+ Q+ +
Sbjct: 155 RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG---QKPPGATEPITVKFANNPSQK-T 210
Query: 61 SQALV 65
+QA++
Sbjct: 211 NQAIL 215
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 99 (39.9 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209
Score = 86 (35.3 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 29/106 (27%), Positives = 47/106 (44%)
Query: 64 LVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-- 121
+ + G + G + G G IFV L D + L + F FG + +VK+
Sbjct: 256 MTIDGMTSLAGINIPGHPG--TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFN 313
Query: 122 ----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
KG GFV N +A +A+ L G +G + +++S N +K
Sbjct: 314 TNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 359
Score = 85 (35.0 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 121
Score = 67 (28.6 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG P + + T K A+ Q+ +
Sbjct: 155 RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG---QKPPGATEPITVKFANNPSQK-T 210
Query: 61 SQALV 65
+QA++
Sbjct: 211 NQAIL 215
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 109 (43.4 bits), Expect = 0.00071, P = 0.00071
Identities = 34/125 (27%), Positives = 59/125 (47%)
Query: 67 AGGPASNG----TRVQ-GSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG 121
A GP+SN + +Q G + + + V L +++ ++ R F GEI S K+
Sbjct: 63 ANGPSSNSRSCPSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRD 122
Query: 122 K------GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIAL 175
K G GFV + + KDAE A+ L G + +T+++S P + R ++ + L
Sbjct: 123 KITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIRDANLYVSGL 181
Query: 176 AQDAT 180
+ T
Sbjct: 182 PKTMT 186
Score = 100 (40.3 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 25/92 (27%), Positives = 47/92 (51%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 167 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRI 226
Query: 134 DAEVALQKLQGT--AIGKQTVRLSSGHNPGNK 163
+AE A++ L G + + + + +NP K
Sbjct: 227 EAEEAIKGLNGQKPSGAAEPITVKFANNPSQK 258
Score = 85 (35.0 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 118 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 170
Score = 82 (33.9 bits), Expect = 9.3e-06, Sum P(2) = 9.3e-06
Identities = 28/96 (29%), Positives = 43/96 (44%)
Query: 74 GTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFV 127
G + G G IFV L D + L + F FG + +VK+ KG GFV
Sbjct: 314 GMNIPGHTG--TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFV 371
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
N +A +A+ L G +G + +++S N +K
Sbjct: 372 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 407
Score = 68 (29.0 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG S I V K + Q +
Sbjct: 204 RILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITV----KFANNPSQKT 259
Query: 61 SQALV 65
SQAL+
Sbjct: 260 SQALL 264
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 99 (39.9 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 146 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 205
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 206 EAEEAIKGLNGQKPPGATEPITVKFANNPSQK 237
Score = 86 (35.3 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 29/106 (27%), Positives = 47/106 (44%)
Query: 64 LVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-- 121
+ + G + G + G G IFV L D + L + F FG + +VK+
Sbjct: 283 MTIDGMTSLAGINIPGHPG--TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFN 340
Query: 122 ----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
KG GFV N +A +A+ L G +G + +++S N +K
Sbjct: 341 TNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 386
Score = 85 (35.0 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 97 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 149
Score = 67 (28.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG P + + T K A+ Q+ +
Sbjct: 183 RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG---QKPPGATEPITVKFANNPSQK-T 238
Query: 61 SQALV 65
+QA++
Sbjct: 239 NQAIL 243
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 99 (39.9 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 147 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 206
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 207 EAEEAIKGLNGQKPPGATEPITVKFANNPSQK 238
Score = 86 (35.3 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 29/106 (27%), Positives = 47/106 (44%)
Query: 64 LVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-- 121
+ + G + G + G G IFV L D + L + F FG + +VK+
Sbjct: 284 MTIDGMTSLAGINIPGHPG--TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFN 341
Query: 122 ----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
KG GFV N +A +A+ L G +G + +++S N +K
Sbjct: 342 TNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 387
Score = 85 (35.0 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 98 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 150
Score = 67 (28.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG P + + T K A+ Q+ +
Sbjct: 184 RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG---QKPPGATEPITVKFANNPSQK-T 239
Query: 61 SQALV 65
+QA++
Sbjct: 240 NQAIL 244
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 99 (39.9 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 147 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 206
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 207 EAEEAIKGLNGQKPPGATEPITVKFANNPSQK 238
Score = 85 (35.0 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 98 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 150
Score = 79 (32.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 26/97 (26%), Positives = 43/97 (44%)
Query: 64 LVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-- 121
+ + G + G + G G IFV L D + L + F FG + +VK+
Sbjct: 285 MTIDGMTSLAGINIPGHPG--TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFN 342
Query: 122 ----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154
KG GFV N +A +A+ L G +G + +++
Sbjct: 343 TNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 379
>UNIPROTKB|E1BVJ8 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00823174 ProteinModelPortal:E1BVJ8
Ensembl:ENSGALT00000015443 OMA:FEDSRNH ArrayExpress:E1BVJ8
Uniprot:E1BVJ8
Length = 254
Score = 133 (51.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 43/149 (28%), Positives = 71/149 (47%)
Query: 13 GYGFVRFGDENERSRAMIEMNGV-YCSSRPMSIDVATPKKASG-YQQQCSSQALVLAGGP 70
G+GFV F D + A+ E+NG C R ++I+ A ++ G + Q+ S + G
Sbjct: 38 GFGFVEFEDHRDADDAIYELNGKELCDERRVTIEHARARRGRGRFAQRFSYYS---QSGS 94
Query: 71 ASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-KGCGFVQF 129
+ G V+ I V L S +S +DL++ GE+ V + G V+F
Sbjct: 95 SRYGPPVR------TEHRIIVENLSSRISWQDLKDVMRKAGEVTYVDAHRNNRNEGVVEF 148
Query: 130 ANRKDAEVALQKLQGTAIGKQTVRLSSGH 158
A+ D + AL+KL GT + + ++L H
Sbjct: 149 ASYSDMKSALEKLDGTELNGRRIKLIEDH 177
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 134 (52.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 36/128 (28%), Positives = 67/128 (52%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++ + A+ +M G + R + + AT +K +
Sbjct: 125 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT-RKPPAPKSTYE 183
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
S L+ N Q S +N T++ G + S ++++ +R+ FS FG+I+ +++
Sbjct: 184 SNTKQLSYDEVVN----QSSP---SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP 236
Query: 121 GKGCGFVQ 128
KG FV+
Sbjct: 237 DKGYSFVR 244
Score = 118 (46.6 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 137
SN+ +FVG L +++ +D++ F+ FG I ++ GK G GFV F N+ DAE
Sbjct: 92 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 151
Query: 138 ALQKLQGTAIGKQTVR 153
A+Q++ G +G + +R
Sbjct: 152 AIQQMGGQWLGGRQIR 167
Score = 50 (22.7 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
K+I+D T Y FV F + + A+ MNG + + ++ AT S ++ S
Sbjct: 37 KMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTP--SSQKKDTS 92
Query: 61 SQALVLAG 68
+ V G
Sbjct: 93 NHFHVFVG 100
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 135 (52.6 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 35/116 (30%), Positives = 59/116 (50%)
Query: 72 SNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCG 125
S G + G + + ++FVG + DVS+ +R FS G +LS+K+ GK G G
Sbjct: 3 SGGYKSSGVGNDRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYG 62
Query: 126 FVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATY 181
F++F + + AEVA++ L G + + +R+ S N + G N A ++ Y
Sbjct: 63 FIEFPDIQTAEVAIRNLNGYELSGRILRVDSAAGGMNMEEFGSSSNAPAPVEENPY 118
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 133 (51.9 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 43/168 (25%), Positives = 79/168 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV F + +A+ EMNG + + + + A K + +
Sbjct: 54 KVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 112
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + TR QG ++V LD + D+ LR+ FS FG I S K+ +
Sbjct: 113 FEQM-----KQDRITRYQG-------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM 160
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164
KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 161 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 208
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 137 (53.3 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 44/152 (28%), Positives = 74/152 (48%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D ++ ++G+GFV F E +A++ MNG S R + + A +K Q +
Sbjct: 221 KVMRD-DSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRA--QKRVERQNELK 277
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + TR QG ++V LD + D+ LR+ FS +G I S K+
Sbjct: 278 RRFEQMK---QDRLTRYQG-------VNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIG 148
KG GFV F++ ++A A+ ++ G +G
Sbjct: 328 EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 101 (40.6 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 34/108 (31%), Positives = 51/108 (47%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S IF+ L+ + +K L + FS FG ILS K+ +G GFV F + A+ A
Sbjct: 95 KSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDAT--YVNN 184
+ + G + + V + GH K R + L A A + T YV N
Sbjct: 155 ISTMNGMLLNDRKVFV--GHF---KSRREREVELGARAMEFTNIYVKN 197
Score = 92 (37.4 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKI---PVG--KGCGFVQFANRKDAEVALQKLQ 143
I+V L DV ++ L++ FS FG++LSVK+ G +G GFV F ++A+ A+ +
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMN 252
Query: 144 GTAI 147
G +
Sbjct: 253 GREV 256
Score = 61 (26.5 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D + R G+GFV F A+ MNG+ + R + +
Sbjct: 129 KVVCDEHGSR--GFGFVHFETHEAAQNAISTMNGMLLNDRKVFV 170
Score = 55 (24.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY ++ F + RA+ MN +P+ I
Sbjct: 41 RVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRI 84
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 103 (41.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 29/98 (29%), Positives = 51/98 (52%)
Query: 87 ATIFVGALDSDVSDKDLREPFSHFGEILSV-KIP-----VGKGCGFVQFANRKDAEVALQ 140
A +FVG LD V+++ L + FS FG ++++ K+ + KG GFV FA+ + ++ A+
Sbjct: 101 AELFVGNLDPMVTEQVLYDTFSRFGNLVNLPKVARDDSNLSKGYGFVSFADFESSDAAIA 160
Query: 141 KLQGTAIGKQTVRLSSGHNPGNKQWR-GDHINLIALAQ 177
+ G + + V + + K R GD + AQ
Sbjct: 161 NMNGQYLMNKQVSVQYAYKKDGKGERHGDQAERMLAAQ 198
Score = 75 (31.5 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 5 DSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51
D T +GYGFV F E + A MNG+ +P+ ++ A+ K
Sbjct: 47 DRVTQSHQGYGFVEFNSEEDAEYASRIMNGIRLYGKPIRVNKASADK 93
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 133 (51.9 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 35/128 (27%), Positives = 67/128 (52%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D T ++KGYGFV F ++ + A+ +M G + R + + AT +K +
Sbjct: 121 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT-RKPPAPKSTYE 179
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
S L+ + Q S G N T++ G + S ++++ +R+ FS FG+I+ +++
Sbjct: 180 SNTKQLSYDEVVS----QSSPG---NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFP 232
Query: 121 GKGCGFVQ 128
KG F++
Sbjct: 233 DKGYSFIR 240
Score = 118 (46.6 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI----PVGK--GCGFVQFANRKDAEV 137
SN+ +FVG L +++ +D++ F+ FG I ++ GK G GFV F N+ DAE
Sbjct: 88 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 147
Query: 138 ALQKLQGTAIGKQTVR 153
A+Q++ G +G + +R
Sbjct: 148 AIQQMGGQWLGGRQIR 163
Score = 50 (22.7 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
K+I+D T Y FV F + + A+ MNG + + ++ AT S ++ S
Sbjct: 33 KMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTP--SSQKKDTS 88
Query: 61 SQALVLAG 68
+ V G
Sbjct: 89 NHFHVFVG 96
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 133 (51.9 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 43/168 (25%), Positives = 79/168 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV F + +A+ EMNG + + + + A K + +
Sbjct: 90 KVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 148
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + TR QG ++V LD + D+ LR+ FS FG I S K+ +
Sbjct: 149 FEQM-----KQDRITRYQG-------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM 196
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164
KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 197 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 244
Score = 81 (33.6 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ D+ D+ L++ F G LSVK+ KG GFV F +DA+ A+ ++
Sbjct: 65 VYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 121
Query: 144 GTAI-GKQ 150
G + GKQ
Sbjct: 122 GKELNGKQ 129
Score = 74 (31.1 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
V+ D N +KGYGFV F + RA+ +MNG+ + R + +
Sbjct: 2 VVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 42
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 137 (53.3 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 41/156 (26%), Positives = 73/156 (46%)
Query: 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSS 61
V++D T ++KGYGFV F D + A+ E+NG + + ++ A P+ +
Sbjct: 68 VVVDPKTKQSKGYGFVTFADVEDAKAALEELNGSTFEGKKIKVEYAQPRHR--VVDETVG 125
Query: 62 QALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDV-SDKDLREPFSHFGEILSVKIPV 120
+++ A R Q ++ + V L + + +DL F FG++ V +P
Sbjct: 126 KSVPSAEALERKKQREQ-QKADTQPPKLIVRNLPWSIKTPEDLAAHFRSFGKVKYVTLPK 184
Query: 121 -GK---GCGFVQFANRKDAEVALQKLQGTAIGKQTV 152
G G GFV +K+AE AL+ + G + +T+
Sbjct: 185 KGSQLAGFGFVVLRGKKNAEKALEAVNGKEVDGRTL 220
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 130 (50.8 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 41/161 (25%), Positives = 80/161 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KVI D++ ++KG+GFVR+ +A+++++G + + + A K + +
Sbjct: 65 KVIRDAS-GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRR 123
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ L L +R G I++ LD ++D+ L+E FS FG I K+ +
Sbjct: 124 FERLRL-----KEKSRPPG-------VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM 171
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157
GKG G V F++ ++A A+ ++ G +G + + ++ G
Sbjct: 172 EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLG 212
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 100 (40.3 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 146 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 205
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 206 EAEEAIKGLNGQKPPGATEPITVKFANNPSQK 237
Score = 80 (33.2 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 142
IFV L D + L + F FG + +VK+ KG GFV N +A +A+ L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 143 QGTAIGKQTVRLS 155
G +G + +++S
Sbjct: 368 NGYRLGDRVLQVS 380
Score = 79 (32.9 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 1 KVIIDSNTD-RTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K++ D T+ ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 96 KLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 149
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 136 (52.9 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 42/154 (27%), Positives = 76/154 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV + + ++A+ EMNG S + + + A Q++
Sbjct: 221 KVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA--------QKKVE 271
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
QA + R+ G +++ LD + D+ LR+ FS FG I S K+ +
Sbjct: 272 RQAELKRKFEQLKQERISRYQG----VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQ 150
KG GFV F++ ++A A+ ++ G +G +
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 361
Score = 111 (44.1 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKI---PVGK--GCGFVQFANRKDAEVALQKLQ 143
+++ +V D++L+E FS FG+ LSVK+ P GK G GFV + +DA A++++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 144 GTAI-GK 149
G I GK
Sbjct: 253 GKEISGK 259
Score = 108 (43.1 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 33/109 (30%), Positives = 54/109 (49%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S +F+ LD + +K L + FS FG ILS K+ KG FV F ++ A+ A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
++K+ G + + V + G K+ + L A A++ T V +NF
Sbjct: 155 IEKMNGMLLNDRKVFV--GRFKSRKEREAE---LGAKAKEFTNVYIKNF 198
Score = 70 (29.7 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGY FV F + +A+ +MNG+ + R + +
Sbjct: 129 KVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY +V F + RA+ MN +P+ I
Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRI 84
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 136 (52.9 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 42/154 (27%), Positives = 76/154 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV + + ++A+ EMNG S + + + A Q++
Sbjct: 221 KVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA--------QKKVE 271
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
QA + R+ G +++ LD + D+ LR+ FS FG I S K+ +
Sbjct: 272 RQAELKRKFEQLKQERISRYQG----VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQ 150
KG GFV F++ ++A A+ ++ G +G +
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 361
Score = 110 (43.8 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKI---PVGK--GCGFVQFANRKDAEVALQKLQ 143
+++ +V D+ L+E FS FG+ LSVK+ P GK G GFV + +DA A++++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 144 GTAI-GK 149
G I GK
Sbjct: 253 GKEISGK 259
Score = 108 (43.1 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 33/109 (30%), Positives = 54/109 (49%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S +F+ LD + +K L + FS FG ILS K+ KG FV F ++ A+ A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
++K+ G + + V + G K+ + L A A++ T V +NF
Sbjct: 155 IEKMNGMLLNDRKVFV--GRFKSRKEREAE---LGAKAKEFTNVYIKNF 198
Score = 70 (29.7 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGY FV F + +A+ +MNG+ + R + +
Sbjct: 129 KVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY +V F + RA+ MN +P+ I
Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRI 84
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 133 (51.9 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 41/154 (26%), Positives = 76/154 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV + + ++A+ EMNG + + + + A Q++
Sbjct: 221 KVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRA--------QKKVE 271
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
QA + R+ G +++ LD + D+ LR+ FS FG I S K+ +
Sbjct: 272 RQAELKRKFEQLKQERISRYQG----VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQ 150
KG GFV F++ ++A A+ ++ G +G +
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 361
Score = 111 (44.1 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKI---PVGK--GCGFVQFANRKDAEVALQKLQ 143
+++ +V D++L+E FS FG+ LSVK+ P GK G GFV + +DA A++++
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 144 GTAI-GK 149
G I GK
Sbjct: 253 GKEITGK 259
Score = 108 (43.1 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 33/109 (30%), Positives = 54/109 (49%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S +F+ LD + +K L + FS FG ILS K+ KG FV F ++ A+ A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
++K+ G + + V + G K+ + L A A++ T V +NF
Sbjct: 155 IEKMNGMLLNDRKVFV--GRFKSRKEREAE---LGAKAKEFTNVYIKNF 198
Score = 70 (29.7 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGY FV F + +A+ +MNG+ + R + +
Sbjct: 129 KVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY +V F + RA+ MN +P+ I
Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRI 84
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 136 (52.9 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 46/152 (30%), Positives = 75/152 (49%)
Query: 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQ-QQCS 60
VI+ ++KG+GFV F + ++ +RA+ +NG + + A K + +Q
Sbjct: 254 VIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKF 313
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI-- 118
Q+L A + QGS+ ++V LD V+D LRE F+ FG I S K+
Sbjct: 314 EQSLKEAADKS------QGSN-------LYVKNLDESVTDDKLREHFAPFGTITSCKVMR 360
Query: 119 -PVG--KGCGFVQFANRKDAEVALQKLQGTAI 147
P G +G GFV F+ ++A A+ ++ G I
Sbjct: 361 DPSGVSRGSGFVAFSTPEEATRAITEMNGKMI 392
Score = 118 (46.6 bits), Expect = 0.00011, P = 0.00011
Identities = 39/114 (34%), Positives = 54/114 (47%)
Query: 44 IDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDL 103
++ ATP+ AS + + AL R S +S IF+ LD + K L
Sbjct: 91 VNYATPQDASRALNELNFMALNGRAIRVMYSVR-DPSLRKSGVGNIFIKNLDKSIDHKAL 149
Query: 104 REPFSHFGEILSVKI---PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 152
E FS FG ILS K+ P G KG GFVQ+ + A+ A+ KL G + + V
Sbjct: 150 HETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQV 203
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 110 (43.8 bits), Expect = 0.00074, P = 0.00074
Identities = 35/110 (31%), Positives = 52/110 (47%)
Query: 62 QALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI--- 118
Q+ +AG P N T E IFVG L +V+D+ LR FS F + +
Sbjct: 157 QSAAIAGNP--NNT-------EEPLFNIFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWD 207
Query: 119 ---PVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS-SGHNPGNKQ 164
+G GFV F N+ DAE+ALQ + G + + +R + + H +Q
Sbjct: 208 MQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWASHKQQQQQ 257
Score = 108 (43.1 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSS 61
V+ D T R++GYGFV FG++++ A+ MNG + R + + A+ K+ QQ ++
Sbjct: 204 VMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWASHKQQQ-QQQHYNN 262
Query: 62 QALVLAGGPASNGTRVQGSDGESNN 86
Q GG S G R + G +NN
Sbjct: 263 QH----GGGYSRGYR-NNNGGNNNN 282
Score = 71 (30.1 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 16/70 (22%), Positives = 35/70 (50%)
Query: 88 TIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI 147
T+++G + ++L +FG I+ K +GC FV++ + A +A+ +L G +
Sbjct: 413 TVYLGNIAHFTQQQELIPLLQNFGFIVDFKFHPERGCAFVKYDTHERAALAIIQLAGFNL 472
Query: 148 GKQTVRLSSG 157
+ ++ G
Sbjct: 473 NGRPLKCGWG 482
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 136 (52.9 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 42/154 (27%), Positives = 76/154 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV + + ++A+ EMNG S + + + A Q++
Sbjct: 261 KVMRDPS-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRA--------QKKVE 311
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
QA + R+ G +++ LD + D+ LR+ FS FG I S K+ +
Sbjct: 312 RQAELKRKFEQLKQERISRYQG----VNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML 367
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQ 150
KG GFV F++ ++A A+ ++ G +G +
Sbjct: 368 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSK 401
Score = 110 (43.8 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKI---PVGK--GCGFVQFANRKDAEVALQKLQ 143
+++ +V D+ L+E FS FG+ LSVK+ P GK G GFV + +DA A++++
Sbjct: 233 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 292
Query: 144 GTAI-GK 149
G I GK
Sbjct: 293 GKEISGK 299
Score = 70 (29.7 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGY FV F + +A+ +MNG+ + R + +
Sbjct: 169 KVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV 210
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 133 (51.9 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 43/168 (25%), Positives = 79/168 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV F + +A+ EMNG + + + + A K + +
Sbjct: 157 KVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 215
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + TR QG ++V LD + D+ LR+ FS FG I S K+ +
Sbjct: 216 FEQM-----KQDRITRYQG-------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM 263
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164
KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 264 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 311
Score = 117 (46.2 bits), Expect = 0.00012, P = 0.00012
Identities = 36/109 (33%), Positives = 55/109 (50%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S IF+ LD + +K L + FS FG ILS K+ KG GFV F ++ AE A
Sbjct: 31 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 90
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
++K+ G + + V + G K+ + L A A++ T V +NF
Sbjct: 91 IEKMNGMLLNDRKVFV--GRFKSRKEREAE---LGARAKEFTNVYIKNF 134
Score = 102 (41.0 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ D+ D+ L+E F FG LSVK+ KG GFV F +DA+ A+ ++
Sbjct: 129 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 188
Query: 144 GTAI-GKQ 150
G + GKQ
Sbjct: 189 GKELNGKQ 196
Score = 79 (32.9 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGYGFV F + RA+ +MNG+ + R + +
Sbjct: 65 KVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 106
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 68 GGPA-SNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEIL--SVKI-PV--- 120
GG A S G ++ S E + +F+G L D + KDL++ FS FGE++ ++K+ P+
Sbjct: 58 GGSAESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 117
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGK 149
+G GFV F + + + + + GK
Sbjct: 118 SRGFGFVLFKESESVDKVMDQKEHKLNGK 146
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 131 (51.2 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 39/165 (23%), Positives = 80/165 (48%)
Query: 5 DSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQAL 64
D+N ++KG G V F ++ + + + E + S+ ID T ++G + + + +
Sbjct: 394 DAN-GKSKGLGLVEFKNQEDAQKILTESGALIIST----IDGTTTVSSNGGTIEINGKPI 448
Query: 65 VLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDL-REPFSHFGEILSVKIPV--- 120
+ S R ++ + ++F+ +D + D+DL +E F+ G I+ +KI
Sbjct: 449 TI-DRIKSKVERFTEYRKKTTDLSLFINNIDESI-DRDLIKEEFAKHGTIIGIKIVQDEN 506
Query: 121 --GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
KG GF+ F+ ++A+ AL L G G + +++S + N+
Sbjct: 507 ARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSFSNKDNNQ 551
Score = 114 (45.2 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIP----VGKGCGFVQFANRKDAEVA 138
++N IFV L+ V + L + FS FG ILS K+ + KG G+V F AE A
Sbjct: 270 KTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEKGISKGYGYVHFETNDSAEKA 329
Query: 139 LQKLQGTAI-GK 149
++K+ GT I GK
Sbjct: 330 IEKVNGTLILGK 341
Score = 67 (28.6 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 5 DSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
DSNT R+ GY +V F + ++ RA+ +N +P I
Sbjct: 220 DSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRI 259
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 128 (50.1 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 44/159 (27%), Positives = 78/159 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
K+I+D T Y FV F + + A+ MNG + + ++ AT + Q++ +
Sbjct: 37 KMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSS---QKKDT 91
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI-- 118
S + V++ Q S + +FVG L +++ +D++ F+ FG I ++
Sbjct: 92 SSSTVVS---------TQRSQDHFH---VFVGDLSPEITTEDIKAAFAPFGRISDARVVK 139
Query: 119 --PVGK--GCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153
GK G GFV F N+ DAE A+Q++ G +G + +R
Sbjct: 140 DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 135 (52.6 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 44/168 (26%), Positives = 78/168 (46%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D N ++KG+GFV F + +A+ EMNG + + M + A K + +
Sbjct: 221 KVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRK 279
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + TR QG ++V LD + D+ LR+ F FG I S K+ +
Sbjct: 280 FEQM-----KQDRITRYQG-------VNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMM 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164
KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 115 (45.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 36/109 (33%), Positives = 54/109 (49%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S IF+ LD + +K L + FS FG ILS K+ KG GFV F ++ AE A
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
+ K+ G + + V + G K+ + L A A++ T V +NF
Sbjct: 155 IDKMNGMLLNDRKVFV--GRFKSRKEREAE---LGARAKEFTNVYIKNF 198
Score = 94 (38.1 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ D++D+ L+E F +G LSVK+ KG GFV F +DA+ A+ ++
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 144 G 144
G
Sbjct: 253 G 253
Score = 79 (32.9 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGYGFV F + RA+ +MNG+ + R + +
Sbjct: 129 KVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
Score = 59 (25.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY +V F + RA+ MN RP+ I
Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRI 84
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 134 (52.2 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 46/161 (28%), Positives = 80/161 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVY-CSSRPMSIDVATPKKASGYQQQC 59
+VI+D + R+KGYG+V F + E ++A + NG R +++D++ P+ A+ Q
Sbjct: 293 RVIMDGQSGRSKGYGYVDF-ETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPAN--PQPY 349
Query: 60 SSQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIP 119
+ Q G S + SD T+FVG L + ++ DL F G+I S+++P
Sbjct: 350 AQQRAGNFGDQLS-----EPSD------TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLP 398
Query: 120 VG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154
KG G+V F++ A+ ++ + G I + RL
Sbjct: 399 TDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFIAGRPCRL 438
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 133 (51.9 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 43/168 (25%), Positives = 79/168 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV F + +A+ EMNG + + + + A K + +
Sbjct: 221 KVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + TR QG ++V LD + D+ LR+ FS FG I S K+ +
Sbjct: 280 FEQM-----KQDRITRYQG-------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164
KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 117 (46.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 36/109 (33%), Positives = 55/109 (50%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S IF+ LD + +K L + FS FG ILS K+ KG GFV F ++ AE A
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
++K+ G + + V + G K+ + L A A++ T V +NF
Sbjct: 155 IEKMNGMLLNDRKVFV--GRFKSRKEREAE---LGARAKEFTNVYIKNF 198
Score = 102 (41.0 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ D+ D+ L+E F FG LSVK+ KG GFV F +DA+ A+ ++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 144 GTAI-GKQ 150
G + GKQ
Sbjct: 253 GKELNGKQ 260
Score = 79 (32.9 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGYGFV F + RA+ +MNG+ + R + +
Sbjct: 129 KVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY +V F + RA+ MN +P+ I
Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 84
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 133 (51.9 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 43/168 (25%), Positives = 79/168 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV F + +A+ EMNG + + + + A K + +
Sbjct: 221 KVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + TR QG ++V LD + D+ LR+ FS FG I S K+ +
Sbjct: 280 FEQM-----KQDRITRYQG-------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164
KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 117 (46.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 36/109 (33%), Positives = 55/109 (50%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S IF+ LD + +K L + FS FG ILS K+ KG GFV F ++ AE A
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
++K+ G + + V + G K+ + L A A++ T V +NF
Sbjct: 155 IEKMNGMLLNDRKVFV--GRFKSRKEREAE---LGARAKEFTNVYIKNF 198
Score = 102 (41.0 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ D+ D+ L+E F FG LSVK+ KG GFV F +DA+ A+ ++
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 144 GTAI-GKQ 150
G + GKQ
Sbjct: 253 GKELNGKQ 260
Score = 79 (32.9 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGYGFV F + RA+ +MNG+ + R + +
Sbjct: 129 KVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY +V F + RA+ MN +P+ I
Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 84
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 112 (44.5 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 87 ATIFVGALDSDVSDKDLREPFSHFGEILSVKI------PVGKGCGFVQFANRKDAEVALQ 140
A ++V L ++S DL F+ FG+I++ +I + KG GF++F R +AE A+Q
Sbjct: 130 ANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQ 189
Query: 141 KLQG-TAIG-KQTVRLSSGHNPGN 162
+L G T G + + + +NP N
Sbjct: 190 ELNGKTPKGYAEPITVKFANNPSN 213
Score = 92 (37.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 30/96 (31%), Positives = 46/96 (47%)
Query: 66 LAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI------P 119
LAG +N + G+ + IFV L + + L + F FG + SVK+
Sbjct: 253 LAGDLLANSI-LPGNAMTGSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTS 311
Query: 120 VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155
KG GFV N +A VA+Q L G +G + +++S
Sbjct: 312 KCKGFGFVTMTNYDEAVVAIQSLNGYTLGNRVLQVS 347
Score = 80 (33.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNG 34
+++ D+ + +KG GF+RF NE RA+ E+NG
Sbjct: 160 RILCDNISGLSKGVGFIRFDQRNEAERAIQELNG 193
Score = 59 (25.8 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 13 GYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
GYGFV + + +A+ +NG+ ++ + + A P S
Sbjct: 86 GYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSES 126
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 132 (51.5 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 39/140 (27%), Positives = 67/140 (47%)
Query: 8 TDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLA 67
T + +G+GFVRF ++ + +A+ + + + +P+ + A +K YQQ S Q L
Sbjct: 43 TGKPRGFGFVRFANDCDVVKALRDTH--FILGKPVDVRKAI-RKHELYQQPFSMQFLERK 99
Query: 68 GGPASNGTRVQGSDG-ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG----- 121
+ G R S+G S IFVG L S+ ++++ + F FG V +
Sbjct: 100 VQQMNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNR 159
Query: 122 -KGCGFVQFANRKDAEVALQ 140
+G GFV + + EV +Q
Sbjct: 160 PRGFGFVTYDSEDSVEVVMQ 179
>UNIPROTKB|K7EML2 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC002115 HGNC:HGNC:28117
Ensembl:ENST00000586618 Uniprot:K7EML2
Length = 184
Score = 124 (48.7 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 25/44 (56%), Positives = 30/44 (68%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KVI D T +TKGYGFV F D ++ RAM EMNG Y SRP+ +
Sbjct: 115 KVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 158
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 133 (51.9 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 43/168 (25%), Positives = 79/168 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV F + +A+ EMNG + + + + A K + +
Sbjct: 53 KVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 111
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + TR QG ++V LD + D+ LR+ FS FG I S K+ +
Sbjct: 112 FEQM-----KQDRITRYQG-------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM 159
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164
KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 160 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 207
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 134 (52.2 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 43/168 (25%), Positives = 79/168 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+V+ D N +++G+GFV F + RA+ EMNG + + + + A K + +
Sbjct: 221 RVMTDEN-GKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRK 279
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + TR QG ++V LD + D+ LR+ FS FG I S K+ +
Sbjct: 280 FEQM-----KQDRMTRYQG-------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164
KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 328 DGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 117 (46.2 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 36/109 (33%), Positives = 55/109 (50%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S IF+ LD + +K L + FS FG ILS K+ KG GFV F ++ AE A
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
++K+ G + + V + G K+ + L A A++ T V +NF
Sbjct: 155 IEKMNGMLLNDRKVFV--GRFKSRKEREAE---LGARAKEFTNVYIKNF 198
Score = 59 (25.8 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY +V F + RA+ MN RP+ I
Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRI 84
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 134 (52.2 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 43/152 (28%), Positives = 74/152 (48%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ DSN +++G+GF+ F E +A+ MNG S + + + A +K + Q +
Sbjct: 221 KVMRDSN-GQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRA--QKRAERQNELK 277
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + R QG ++V LD ++D L+E FS +G I S K+
Sbjct: 278 RRFEQMK---QERQNRYQG-------VNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMT 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIG 148
KG GFV F++ ++A A+ ++ G +G
Sbjct: 328 ESSHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 104 (41.7 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 32/105 (30%), Positives = 50/105 (47%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG----KGCGFVQFANRKDAEVAL 139
S IF+ L++ + +K L + FS FG ILS K+ +G GFV F + A+ A+
Sbjct: 96 SGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAI 155
Query: 140 QKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNN 184
+ G + + V + GH ++Q R + AL YV N
Sbjct: 156 NTMNGMLLNDRKVFV--GHFK-SRQKREAELGARALGFTNIYVKN 197
Score = 55 (24.4 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY ++ F + RA+ MN +P+ I
Sbjct: 41 RVCRDVATRRSLGYAYINFQQPADAERALDTMNFEMIKGQPIRI 84
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 134 (52.2 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 42/166 (25%), Positives = 78/166 (46%)
Query: 3 IIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQ 62
++ ++ ++KG+GFV F + RA+ EMNG + + + V +K Q + +
Sbjct: 222 VMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGK--QVYVGRAQKKGERQTELKRK 279
Query: 63 ALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-- 120
+ TR QG ++V LD + D+ LR+ FS FG I S K+ +
Sbjct: 280 FEQMK---QDRMTRYQG-------VNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEG 329
Query: 121 --GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164
KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 330 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 114 (45.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 35/109 (32%), Positives = 54/109 (49%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S IF+ LD + +K L + FS FG ILS K+ KG GFV F + AE A
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
++K+ G + + V + G K+ + + A A++ T V +NF
Sbjct: 155 IEKMNGMLLNDRKVFV--GRFKSRKEREAE---MGARAKEFTNVYIKNF 198
Score = 98 (39.6 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 21/81 (25%), Positives = 40/81 (49%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ D+ D+ L+E F +G LS+++ KG GFV F +DA+ A+ ++
Sbjct: 193 VYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMN 252
Query: 144 GTAIGKQTVRLSSGHNPGNKQ 164
G + + V + G +Q
Sbjct: 253 GKEMNGKQVYVGRAQKKGERQ 273
Score = 77 (32.2 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGYGFV F RA+ +MNG+ + R + +
Sbjct: 129 KVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
Score = 60 (26.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY +V F + RA+ MN RP+ I
Sbjct: 41 RVCRDMMTRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRI 84
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 92 (37.4 bits), Expect = 7.8e-07, Sum P(2) = 7.8e-07
Identities = 23/90 (25%), Positives = 45/90 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRK 133
S +A +++ L ++ KD+ E F +G I++ ++ V +G F++F R
Sbjct: 113 SSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRA 172
Query: 134 DAEVALQKLQGT----AIGKQTVRLSSGHN 159
+AE A++ L G A + TV+ ++ N
Sbjct: 173 EAEDAIKDLNGQKPPGAAEQMTVKFAASPN 202
Score = 82 (33.9 bits), Expect = 7.8e-07, Sum P(2) = 7.8e-07
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K+I D + GYGFV + + N+ RA+ +NG+ S+ + + A P S
Sbjct: 64 KLIRDKVAGHSLGYGFVNYLNPNDAERAISTLNGLRLQSKTIKVSYARPSSDS 116
Score = 82 (33.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 73 NGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGF 126
+G V G+ S+ IF+ L D + L + F FG + +VK+ KG GF
Sbjct: 246 SGVNVPGNS--SSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 303
Query: 127 VQFANRKDAEVALQKLQGTAIGKQTVRLS 155
V + ++A +A+ L G +G + +++S
Sbjct: 304 VTMTHYEEAAMAIASLNGYRLGDKILQVS 332
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 133 (51.9 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 43/168 (25%), Positives = 79/168 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV F + +A+ EMNG + + + + A K + +
Sbjct: 176 KVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 234
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + TR QG ++V LD + D+ LR+ FS FG I S K+ +
Sbjct: 235 FEQM-----KQDRITRYQG-------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM 282
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164
KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 283 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 330
Score = 117 (46.2 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 36/109 (33%), Positives = 55/109 (50%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S IF+ LD + +K L + FS FG ILS K+ KG GFV F ++ AE A
Sbjct: 50 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 109
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
++K+ G + + V + G K+ + L A A++ T V +NF
Sbjct: 110 IEKMNGMLLNDRKVFV--GRFKSRKEREAE---LGARAKEFTNVYIKNF 153
Score = 99 (39.9 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ D+ D+ L++ F FG LSVK+ KG GFV F +DA+ A+ ++
Sbjct: 148 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 207
Query: 144 GTAI-GKQ 150
G + GKQ
Sbjct: 208 GKELNGKQ 215
Score = 79 (32.9 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGYGFV F + RA+ +MNG+ + R + +
Sbjct: 84 KVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 125
Score = 52 (23.4 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 8 TDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
T R+ GY +V F + RA+ MN +P+ I
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 39
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 133 (51.9 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 43/168 (25%), Positives = 79/168 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV F + +A+ EMNG + + + + A K + +
Sbjct: 189 KVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 247
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + TR QG ++V LD + D+ LR+ FS FG I S K+ +
Sbjct: 248 FEQM-----KQDRITRYQG-------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM 295
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164
KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 296 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 343
Score = 99 (39.9 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ D+ D+ L++ F FG LSVK+ KG GFV F +DA+ A+ ++
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 220
Query: 144 GTAI-GKQ 150
G + GKQ
Sbjct: 221 GKELNGKQ 228
Score = 74 (31.1 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
V+ D N +KGYGFV F + RA+ +MNG+ + R + +
Sbjct: 98 VVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 138
Score = 56 (24.8 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY +V F + RA+ MN +P+ I
Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 84
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 133 (51.9 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 41/151 (27%), Positives = 74/151 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV++D ++ R++G+GFV +G+ E +A+ EMNG + R + + A Q++
Sbjct: 221 KVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRA--------QKRIE 271
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
Q+ + R+ G ++V LD + D LR+ F +G I S K+
Sbjct: 272 RQSELKRKFEQIKQERINRYQG----VNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMT 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAI 147
KG GFV F++ ++A A+ ++ G +
Sbjct: 328 EGGHSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 106 (42.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ D+ DK LRE FS FG LSVK+ + +G GFV + N ++A+ A+ ++
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMN 252
Query: 144 GTAIGKQTV 152
G + + +
Sbjct: 253 GKEVNGRMI 261
Score = 102 (41.0 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 33/109 (30%), Positives = 50/109 (45%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S +F+ LD + +K L + FS FG ILS K+ +G GFV F + A A
Sbjct: 95 KSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
+Q + G + + V + GH K R + A + T V +NF
Sbjct: 155 IQTMNGMLLNDRKVFV--GHF---KSRRERELEYGAKVMEFTNVYIKNF 198
Score = 70 (29.7 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D + R GYGFV F +RA+ MNG+ + R + +
Sbjct: 129 KVVCDEHGSR--GYGFVHFETHEAANRAIQTMNGMLLNDRKVFV 170
Score = 53 (23.7 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ Y ++ F + RA+ MN RP+ I
Sbjct: 41 RVCRDIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRI 84
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 133 (51.9 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 43/168 (25%), Positives = 79/168 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV F + +A+ EMNG + + + + A K + +
Sbjct: 221 KVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + TR QG ++V LD + D+ LR+ FS FG I S K+ +
Sbjct: 280 FEQM-----KQDRITRYQG-------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164
KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 117 (46.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 36/109 (33%), Positives = 55/109 (50%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S IF+ LD + +K L + FS FG ILS K+ KG GFV F ++ AE A
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
++K+ G + + V + G K+ + L A A++ T V +NF
Sbjct: 155 IEKMNGMLLNDRKVFV--GRFKSRKEREAE---LGARAKEFTNVYIKNF 198
Score = 99 (39.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ D+ D+ L++ F FG LSVK+ KG GFV F +DA+ A+ ++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 144 GTAI-GKQ 150
G + GKQ
Sbjct: 253 GKELNGKQ 260
Score = 79 (32.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGYGFV F + RA+ +MNG+ + R + +
Sbjct: 129 KVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY +V F + RA+ MN +P+ I
Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 84
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 133 (51.9 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 43/168 (25%), Positives = 79/168 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV F + +A+ EMNG + + + + A K + +
Sbjct: 221 KVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + TR QG ++V LD + D+ LR+ FS FG I S K+ +
Sbjct: 280 FEQM-----KQDRITRYQG-------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164
KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 117 (46.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 36/109 (33%), Positives = 55/109 (50%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S IF+ LD + +K L + FS FG ILS K+ KG GFV F ++ AE A
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
++K+ G + + V + G K+ + L A A++ T V +NF
Sbjct: 155 IEKMNGMLLNDRKVFV--GRFKSRKEREAE---LGARAKEFTNVYIKNF 198
Score = 99 (39.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ D+ D+ L++ F FG LSVK+ KG GFV F +DA+ A+ ++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 144 GTAI-GKQ 150
G + GKQ
Sbjct: 253 GKELNGKQ 260
Score = 79 (32.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGYGFV F + RA+ +MNG+ + R + +
Sbjct: 129 KVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY +V F + RA+ MN +P+ I
Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 84
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 133 (51.9 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 43/168 (25%), Positives = 79/168 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV F + +A+ EMNG + + + + A K + +
Sbjct: 221 KVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + TR QG ++V LD + D+ LR+ FS FG I S K+ +
Sbjct: 280 FEQM-----KQDRITRYQG-------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164
KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 117 (46.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 36/109 (33%), Positives = 55/109 (50%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S IF+ LD + +K L + FS FG ILS K+ KG GFV F ++ AE A
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
++K+ G + + V + G K+ + L A A++ T V +NF
Sbjct: 155 IEKMNGMLLNDRKVFV--GRFKSRKEREAE---LGARAKEFTNVYIKNF 198
Score = 99 (39.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ D+ D+ L++ F FG LSVK+ KG GFV F +DA+ A+ ++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 144 GTAI-GKQ 150
G + GKQ
Sbjct: 253 GKELNGKQ 260
Score = 79 (32.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGYGFV F + RA+ +MNG+ + R + +
Sbjct: 129 KVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY +V F + RA+ MN +P+ I
Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 84
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 133 (51.9 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 43/168 (25%), Positives = 79/168 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV F + +A+ EMNG + + + + A K + +
Sbjct: 221 KVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + TR QG ++V LD + D+ LR+ FS FG I S K+ +
Sbjct: 280 FEQM-----KQDRITRYQG-------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164
KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 117 (46.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 36/109 (33%), Positives = 55/109 (50%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S IF+ LD + +K L + FS FG ILS K+ KG GFV F ++ AE A
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
++K+ G + + V + G K+ + L A A++ T V +NF
Sbjct: 155 IEKMNGMLLNDRKVFV--GRFKSRKEREAE---LGARAKEFTNVYIKNF 198
Score = 99 (39.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ D+ D+ L++ F FG LSVK+ KG GFV F +DA+ A+ ++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 144 GTAI-GKQ 150
G + GKQ
Sbjct: 253 GKELNGKQ 260
Score = 79 (32.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGYGFV F + RA+ +MNG+ + R + +
Sbjct: 129 KVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY +V F + RA+ MN +P+ I
Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 84
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 133 (51.9 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 43/168 (25%), Positives = 79/168 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV F + +A+ EMNG + + + + A K + +
Sbjct: 221 KVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + TR QG ++V LD + D+ LR+ FS FG I S K+ +
Sbjct: 280 FEQM-----KQDRITRYQG-------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164
KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 117 (46.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 36/109 (33%), Positives = 55/109 (50%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S IF+ LD + +K L + FS FG ILS K+ KG GFV F ++ AE A
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
++K+ G + + V + G K+ + L A A++ T V +NF
Sbjct: 155 IEKMNGMLLNDRKVFV--GRFKSRKEREAE---LGARAKEFTNVYIKNF 198
Score = 99 (39.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ D+ D+ L++ F FG LSVK+ KG GFV F +DA+ A+ ++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 144 GTAI-GKQ 150
G + GKQ
Sbjct: 253 GKELNGKQ 260
Score = 79 (32.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGYGFV F + RA+ +MNG+ + R + +
Sbjct: 129 KVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY +V F + RA+ MN +P+ I
Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 84
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 133 (51.9 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 43/168 (25%), Positives = 79/168 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV F + +A+ EMNG + + + + A K + +
Sbjct: 221 KVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + TR QG ++V LD + D+ LR+ FS FG I S K+ +
Sbjct: 280 FEQM-----KQDRITRYQG-------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164
KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 117 (46.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 36/109 (33%), Positives = 55/109 (50%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S IF+ LD + +K L + FS FG ILS K+ KG GFV F ++ AE A
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
++K+ G + + V + G K+ + L A A++ T V +NF
Sbjct: 155 IEKMNGMLLNDRKVFV--GRFKSRKEREAE---LGARAKEFTNVYIKNF 198
Score = 99 (39.9 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ D+ D+ L++ F FG LSVK+ KG GFV F +DA+ A+ ++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 144 GTAI-GKQ 150
G + GKQ
Sbjct: 253 GKELNGKQ 260
Score = 79 (32.9 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGYGFV F + RA+ +MNG+ + R + +
Sbjct: 129 KVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY +V F + RA+ MN +P+ I
Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 84
>ZFIN|ZDB-GENE-030131-7336 [details] [associations]
symbol:srsf5a "serine/arginine-rich splicing
factor 5a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-7336 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 OMA:FEDSRNH EMBL:FP103009
EMBL:AY398417 IPI:IPI00503585 RefSeq:NP_957161.1 UniGene:Dr.76029
STRING:Q6TGT9 Ensembl:ENSDART00000043312 GeneID:335396
KEGG:dre:335396 CTD:335396 InParanoid:Q6TGT9 OrthoDB:EOG461459
NextBio:20810825 Uniprot:Q6TGT9
Length = 259
Score = 128 (50.1 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 44/147 (29%), Positives = 71/147 (48%)
Query: 13 GYGFVRFGDENERSRAMIEMNGV-YCSSRPMSIDVATPKKASGYQQQCSSQALVLAGG-- 69
G+GFV F D + A+ E+NG CS R ++I+ A ++ G + GG
Sbjct: 38 GFGFVEFDDYRDADDAVYELNGKELCSER-VTIEHARSRRGRGGGPGMGGRFSPRFGGYR 96
Query: 70 -PASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIP-VGKGCGFV 127
S G+R G + + I V L S +S +DL++ GE+ V K G V
Sbjct: 97 QSRSGGSRY-GPPVRTEHR-IIVENLSSRISWQDLKDLMRKVGEVTFVDAHRTKKNEGVV 154
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVRL 154
+FA+ D + A++KL GT + + ++L
Sbjct: 155 EFASHSDMKNAIEKLDGTDLNGRKLKL 181
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 112 (44.5 bits), Expect = 0.00026, P = 0.00026
Identities = 40/161 (24%), Positives = 75/161 (46%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D++ ++K +GFV F A+ +MNG + + + + A Q++
Sbjct: 220 KVMKDAS-GKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRA--------QKKVE 270
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI-- 118
QA + R++ A +++ LD + D+ LR+ FS FG I VK+
Sbjct: 271 RQAELKEMFEQMKKERIRARQA----AKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQ 326
Query: 119 PVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157
G KG G + F + + A A+ ++ G +G + + ++ G
Sbjct: 327 EAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNIALG 367
Score = 105 (42.0 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S +F+ LD + +K L E FS FG+I+S K+ KG GFV + +++ A+ A
Sbjct: 94 KSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEGSKGYGFVHYQDQRAADRA 153
Query: 139 LQKLQGTAIGKQTV 152
++++ G + T+
Sbjct: 154 IEEMNGKLLRDSTL 167
Score = 98 (39.6 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKI---PVGKG--CGFVQFANRKDAEVALQKLQ 143
+++ D+ D+ LR FS +G+ LSVK+ GK GFV F + K A+ A++ +
Sbjct: 192 VYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMN 251
Query: 144 GTAIGKQTV 152
G I QT+
Sbjct: 252 GRDINGQTI 260
Score = 75 (31.5 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNG 34
KV+ D + +KGYGFV + D+ RA+ EMNG
Sbjct: 128 KVMTDE--EGSKGYGFVHYQDQRAADRAIEEMNG 159
Score = 48 (22.0 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMN 33
++ D + R+ GYG+V F + +A+ MN
Sbjct: 40 RICRDLISHRSLGYGYVNFLQVGDAQKALETMN 72
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 133 (51.9 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 42/152 (27%), Positives = 73/152 (48%)
Query: 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSS 61
V++ +++ +GFV F + + +RA+ +NG + + A +K S + + S
Sbjct: 255 VVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKA--QKKSERELELSR 312
Query: 62 QALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI--- 118
+ G + G + G + ++V LD V+D+ LRE F+ FG I S K+
Sbjct: 313 R---YEQGSSDGGNKFDGLN-------LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRD 362
Query: 119 PVG--KGCGFVQFANRKDAEVALQKLQGTAIG 148
P G KG GFV F+ +A L ++ G +G
Sbjct: 363 PSGTSKGSGFVAFSAASEASRVLNEMNGKMVG 394
Score = 103 (41.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 26/74 (35%), Positives = 37/74 (50%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVA 138
S +FV LD V +K L E FS G I+S K+ +G GFVQF A+ A
Sbjct: 131 SGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNA 190
Query: 139 LQKLQGTAIGKQTV 152
++KL G + + +
Sbjct: 191 IEKLNGKVLNDKQI 204
Score = 65 (27.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D+ T+ + GYG+V + + ++ +AM ++N Y + + + I
Sbjct: 76 RVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRI 119
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 131 (51.2 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 52/170 (30%), Positives = 77/170 (45%)
Query: 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA-SGYQQQCS 60
V+ D T R +G+GFV F D + R + E + + +R +DV K+A S +QQ S
Sbjct: 37 VMRDKLTGRPRGFGFVIFSDPSVLDRVLQEKHSI--DTR--EVDV---KRAMSREEQQVS 89
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ L N +R G D + IFVG L ++D++ R+ F +G + V I
Sbjct: 90 GRTGNL------NTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMY 143
Query: 121 G------KGCGFVQFANRKDAEVALQKLQGTAIGKQT-VR--LSSGHNPG 161
+G GFV F + + L K GKQ V+ L NPG
Sbjct: 144 DQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPG 193
>POMBASE|SPBC4F6.14 [details] [associations]
symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
"rRNA processing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
Length = 674
Score = 133 (51.9 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 45/152 (29%), Positives = 67/152 (44%)
Query: 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSS 61
V+ + T +GYGFV F + RA E+ R + +D ATP+K S +
Sbjct: 36 VVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKRSEVDTD-QN 94
Query: 62 QALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREP-FSHFGEILSVKIPV 120
+A V+ + + N + + L + EP FS FG++ +KIP
Sbjct: 95 KA-------------VKKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPT 141
Query: 121 ---GKGCGF--VQFANRKDAEVALQKLQGTAI 147
G+ CGF V +RK AE A+ L GT I
Sbjct: 142 KGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEI 173
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 117 (46.2 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 36/109 (33%), Positives = 55/109 (50%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S IF+ LD + +K L + FS FG ILS K+ KG GFV F ++ AE A
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
++K+ G + + V + G K+ + L A A++ T V +NF
Sbjct: 155 IEKMNGMLLNDRKVFV--GRFKSRKEREAE---LGARAKEFTNVYIKNF 198
Score = 114 (45.2 bits), Expect = 0.00030, P = 0.00030
Identities = 39/134 (29%), Positives = 63/134 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV F + +A+ EMNG + + + + A K + +
Sbjct: 221 KVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + TR QG ++V LD + D+ LR+ FS FG I S K+ +
Sbjct: 280 FEQM-----KQDRITRYQG-------VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM 327
Query: 121 ----GKGCGFVQFA 130
KG GFV F+
Sbjct: 328 EGGRSKGFGFVCFS 341
Score = 99 (39.9 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ D+ D+ L++ F FG LSVK+ KG GFV F +DA+ A+ ++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 144 GTAI-GKQ 150
G + GKQ
Sbjct: 253 GKELNGKQ 260
Score = 79 (32.9 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGYGFV F + RA+ +MNG+ + R + +
Sbjct: 129 KVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY +V F + RA+ MN +P+ I
Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 84
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 99 (39.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRK 133
S +A ++V L ++ K+L + FS +G I++ +I V +G GF++F R
Sbjct: 158 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 217
Query: 134 DAEVALQKLQGTAIGKQT--VRLSSGHNPGNK 163
+AE A++ L G T + + +NP K
Sbjct: 218 EAEEAIKGLNGQKPPGATEPITVKFANNPSQK 249
Score = 86 (35.3 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 29/106 (27%), Positives = 47/106 (44%)
Query: 64 LVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-- 121
+ + G + G + G G IFV L D + L + F FG + +VK+
Sbjct: 296 MTIDGMTSLAGINIPGHPG--TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFN 353
Query: 122 ----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
KG GFV N +A +A+ L G +G + +++S N +K
Sbjct: 354 TNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 399
Score = 74 (31.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
+VI+ ++ GYGFV + D + +A+ +NG+ ++ + + A P AS
Sbjct: 109 EVIVLGKGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 161
Score = 67 (28.6 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
++++D T ++G GF+RF E A+ +NG P + + T K A+ Q+ +
Sbjct: 195 RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG---QKPPGATEPITVKFANNPSQK-T 250
Query: 61 SQALV 65
+QA++
Sbjct: 251 NQAIL 255
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 112 (44.5 bits), Expect = 0.00023, P = 0.00023
Identities = 39/139 (28%), Positives = 67/139 (48%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV F + +A+ EMNG + + + + A K + + +
Sbjct: 221 KVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRT 279
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + TR Q ++V LD + D+ LR+ FS FG I S K+ +
Sbjct: 280 FEQM-----KQDRITRYQV-------VNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM 327
Query: 121 ----GKGCGFVQFANRKDA 135
KG GFV F++ ++A
Sbjct: 328 EGGRSKGFGFVCFSSPEEA 346
Score = 99 (39.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ D+ D+ L++ F FG LSVK+ KG GFV F +DA+ A+ ++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 144 GTAI-GKQ 150
G + GKQ
Sbjct: 253 GKELNGKQ 260
Score = 72 (30.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
V+ D N +KGYGFV F RA+ +MNG+ + R + +
Sbjct: 130 VVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 130 (50.8 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 41/161 (25%), Positives = 80/161 (49%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KVI D++ ++KG+GFVR+ +A+++++G + + + A K + +
Sbjct: 229 KVIRDAS-GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRR 287
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ L L +R G I++ LD ++D+ L+E FS FG I K+ +
Sbjct: 288 FERLRL-----KEKSRPPG-------VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM 335
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157
GKG G V F++ ++A A+ ++ G +G + + ++ G
Sbjct: 336 EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLG 376
Score = 89 (36.4 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 27/86 (31%), Positives = 42/86 (48%)
Query: 70 PASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI---PVGK--GC 124
P V+ D + +FV + D+ D+ L+E F +G SVK+ GK G
Sbjct: 183 PEERAAEVRTRD-RATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGF 241
Query: 125 GFVQFANRKDAEVALQKLQGTAI-GK 149
GFV++ + A+ A+ L G +I GK
Sbjct: 242 GFVRYETHEAAQKAVLDLHGKSIDGK 267
Score = 68 (29.0 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGY +V F +RA+ MNGV ++R + +
Sbjct: 136 KVVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>TAIR|locus:2147625 [details] [associations]
symbol:AT5G19960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P33240 EMBL:AY093121 EMBL:BT003382 IPI:IPI00545520
RefSeq:NP_568388.1 UniGene:At.31237 ProteinModelPortal:Q8RWF8
SMR:Q8RWF8 IntAct:Q8RWF8 STRING:Q8RWF8 PRIDE:Q8RWF8
EnsemblPlants:AT5G19960.1 GeneID:832118 KEGG:ath:AT5G19960
TAIR:At5g19960 InParanoid:Q8RWF8 OMA:GKCYGFV PhylomeDB:Q8RWF8
ProtClustDB:CLSN2689809 ArrayExpress:Q8RWF8 Genevestigator:Q8RWF8
Uniprot:Q8RWF8
Length = 337
Score = 129 (50.5 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 29/81 (35%), Positives = 51/81 (62%)
Query: 88 TIFVGALDSDVSDKDLREPFSHFGEILSVKI----PV-GKGCGFVQFANRKDAEVALQKL 142
+++VG L D++++ +R FS +G +L+VKI V GK GFV F+NR+ A+ A++ +
Sbjct: 8 SVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDM 67
Query: 143 QGTAIGKQTVRLSSGHNPGNK 163
G +IG + VR++ G +
Sbjct: 68 DGKSIGGRAVRVNDVTTRGGR 88
>TAIR|locus:2043157 [details] [associations]
symbol:MAC5B "MOS4-associated complex subunit 5B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC004561 EMBL:AF428354
EMBL:BT002621 IPI:IPI00535091 PIR:A84698 RefSeq:NP_180518.1
UniGene:At.12692 ProteinModelPortal:Q9ZW36 SMR:Q9ZW36 PRIDE:Q9ZW36
EnsemblPlants:AT2G29580.1 GeneID:817507 KEGG:ath:AT2G29580
TAIR:At2g29580 eggNOG:NOG277760 HOGENOM:HOG000171086
InParanoid:Q9ZW36 KO:K12872 OMA:RNRAHIC PhylomeDB:Q9ZW36
ProtClustDB:CLSN2913258 Genevestigator:Q9ZW36 Uniprot:Q9ZW36
Length = 483
Score = 130 (50.8 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 33/96 (34%), Positives = 54/96 (56%)
Query: 63 ALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGK 122
AL L G GT ++ + +S T++VG L+S V ++D+R+ F GEI S++I K
Sbjct: 206 ALKLLGKAGEMGT-LESPEDQSIR-TLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEK 263
Query: 123 GCGFVQFANRKDAEVALQKLQGT-AIGKQTVRLSSG 157
C FV + R+ AE A ++L + Q ++L+ G
Sbjct: 264 ACAFVTYTTREGAEKAAEELSNRLVVNGQRLKLTWG 299
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 128 (50.1 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 39/139 (28%), Positives = 61/139 (43%)
Query: 41 PMSIDVATPKKASGYQQQCSSQALVLAGGPA--SNGTRVQGSDGESNNATIFVGALDSDV 98
P S +P + + A ++GG + G+++ S + ++ +F+G L D
Sbjct: 19 PFSTPRGSPS-LTALSRPAMEDATEMSGGAEEFAEGSKINASKNQQDDGKMFIGGLSWDT 77
Query: 99 SDKDLREPFSHFGEILSVKI---PV---GKGCGFVQFANRKDAEVALQ----KLQGTAIG 148
S KDL E S FGE++ I PV +G GFV F + E L+ KL G I
Sbjct: 78 SKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKLID 137
Query: 149 KQTVRLSSGHNPGNKQWRG 167
+ + G P K + G
Sbjct: 138 PKRAKALKGKEPPKKVFVG 156
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 91 (37.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 28/97 (28%), Positives = 47/97 (48%)
Query: 73 NGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGF 126
+G V G+ S+ IF+ L D + L + F FG + +VK+ KG GF
Sbjct: 232 SGVNVPGN--ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 289
Query: 127 VQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
V N ++A +A+ L G +G + +++S N +K
Sbjct: 290 VTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 89 (36.4 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 86 NATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVAL 139
+A +++ L ++ KD+ + FS FG I++ ++ V +G F++F R +AE A+
Sbjct: 105 DANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
Query: 140 QKLQG 144
G
Sbjct: 165 TNFNG 169
Score = 79 (32.9 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 24/76 (31%), Positives = 36/76 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYC--SSRPMSID-VATP---KKASG 54
+V++D T ++G F+RF +E A+ NG SS P+++ A P K +
Sbjct: 136 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHKPPGSSEPITVKFAANPNQNKNVAL 195
Query: 55 YQQQCSSQALVLAGGP 70
Q C S A GGP
Sbjct: 196 LSQLCHSPARRF-GGP 210
Score = 72 (30.4 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP 49
K+I D + GYGFV + + RA+ +NG+ S+ + + A P
Sbjct: 50 KLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 131 (51.2 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 42/168 (25%), Positives = 78/168 (46%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D ++KG+GFV F + +A+ EMNG + + + + A K + +
Sbjct: 221 KVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELKRK 279
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + G R QG + ++V LD + D+ L++ FS FG I S K+
Sbjct: 280 FEQVT-----QDRGIRYQGIN-------LYVKNLDDGIDDERLQKEFSPFGTITSTKVMT 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164
KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQ 375
Score = 102 (41.0 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVAL 139
S +F+ L+ + +K L + FS FG ILS K+ KG GFV F + AE A+
Sbjct: 96 SGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENGSKGHGFVHFETEEAAERAI 155
Query: 140 QKLQGTAIGKQTV 152
+K+ G + + V
Sbjct: 156 EKMNGMLLNDRKV 168
Score = 94 (38.1 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 28/85 (32%), Positives = 42/85 (49%)
Query: 71 ASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCG 125
A GTR + E N +++ + DK L F FG++LSVK+ KG G
Sbjct: 181 AELGTRTK----EFTN--VYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFG 234
Query: 126 FVQFANRKDAEVALQKLQGTAI-GK 149
FV F +DA+ A+ ++ G + GK
Sbjct: 235 FVSFERHEDAQKAVDEMNGKELNGK 259
Score = 77 (32.2 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KG+GFV F E RA+ +MNG+ + R + +
Sbjct: 129 KVVCDENG--SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFV 170
Score = 50 (22.7 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY V F + RA+ MN +P+ I
Sbjct: 41 RVYRDVITRRSLGYASVNFEQPADAERALDTMNFDVIKGKPVRI 84
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 110 (43.8 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 29/101 (28%), Positives = 50/101 (49%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+F+ LD + +K L + FS FG+ILS K+ V KG GFV F + + A A++ +
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 144 GTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNN 184
G + + V + GH+ ++ R + + Y+ N
Sbjct: 230 GMLLNDKKVYV--GHHVSRRE-RQSKVEALKANFTNVYIKN 267
Score = 88 (36.0 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 18/65 (27%), Positives = 39/65 (60%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEV 137
++N +++ LD+++++++ + F FGEI S+ + +G GFV +AN + A+
Sbjct: 257 KANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQK 316
Query: 138 ALQKL 142
A+ +L
Sbjct: 317 AVDEL 321
Score = 64 (27.6 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIE-MNGVYCSSRPMSI 44
KV +D KGYGFV F D E + A IE +NG+ + + + +
Sbjct: 198 KVAVDE-LGNAKGYGFVHF-DSVESANAAIEHVNGMLLNDKKVYV 240
Score = 63 (27.2 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D+ T R+ GY +V F + + +A+ E+N RP I
Sbjct: 110 RVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRI 153
>ZFIN|ZDB-GENE-030131-591 [details] [associations]
symbol:srsf4 "serine/arginine-rich splicing factor
4" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-591 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6429 EMBL:BC046895 EMBL:CR450687 IPI:IPI00503693
RefSeq:NP_955868.1 RefSeq:XP_003200617.1 UniGene:Dr.4165
Ensembl:ENSDART00000125200 GeneID:321872 KEGG:dre:321872
InParanoid:Q802Y1 NextBio:20807565 Uniprot:Q802Y1
Length = 366
Score = 128 (50.1 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 43/159 (27%), Positives = 69/159 (43%)
Query: 9 DRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAG 68
D GYGFV F D + A+ ++NG + + ++ ++ G + S G
Sbjct: 32 DLKNGYGFVEFDDPRDADDAVYDLNGKDLCGKRVIVEHTIGQRRDGGNRSGRSNRYGRGG 91
Query: 69 GPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-KGCGFV 127
G G R G ++ I V L S S +DL++ GE+ G K G +
Sbjct: 92 G-GGGGDRY-GPPTRTDYRLI-VENLSSRCSWQDLKDYMRQAGEVTYADTNKGRKNEGVI 148
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWR 166
+F D + AL+KL GT + + +RL PG ++ R
Sbjct: 149 EFRQYSDMKRALEKLDGTEVNGRKIRLIEDR-PGARRRR 186
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 131 (51.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 41/152 (26%), Positives = 67/152 (44%)
Query: 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSS 61
V++ + KG+GFV F D++ +A+ ++N + V +K S +
Sbjct: 268 VVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELKR 327
Query: 62 QALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV- 120
+ L RVQ G ++V ++ D++D LR+ FS FG I S K+ V
Sbjct: 328 KYEAL------KQERVQRYQG----VNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVD 377
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIG 148
KG GFV F ++A A+ + IG
Sbjct: 378 ENGRSKGFGFVCFEKPEEATAAVTDMNSKMIG 409
Score = 109 (43.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVA 138
+ N IF+ LD + +K + + FS FG ILS K+ KG GFV F A+ A
Sbjct: 142 AGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTA 201
Query: 139 LQKLQGTAIGKQTV 152
++K+ G + + V
Sbjct: 202 IEKVNGMLLSDKKV 215
Score = 58 (25.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 7 NTDRTK-GYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
NT R GY +V F + RA+ MN RPM I
Sbjct: 92 NTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRI 130
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 104 (41.7 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 33/108 (30%), Positives = 56/108 (51%)
Query: 54 GYQQQCSSQALVLAGGPAS--NGTRVQGSDGESNNAT--IFVGALDSDVSDKDLREPFSH 109
GYQQQ + ++ G A N + Q + N + +F+ L D++L++ F+
Sbjct: 250 GYQQQPNVNFGMMQGNQAFDYNQQQQQQQQQQQPNESNDLFIYYLPFTYGDEELKQLFAP 309
Query: 110 FGEILSVKIPVGKG-----C-GFVQFANRKDAEVALQKLQGTAI-GKQ 150
+G ++S K+ + K C GFV + N + A A+Q+L G AI GK+
Sbjct: 310 YGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAIQELNGRAIEGKK 357
Score = 64 (27.6 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 3 IIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYC---SSRPMSIDVATP-----KKASG 54
I+ + KGYGF+++ +E A+ E++G + S+ P+ + A KK G
Sbjct: 137 IVREKDGKPKGYGFIKYSTRDESENALREIDGKHTLPGSNLPIIVKFADTERQKRKKLLG 196
Query: 55 YQQ 57
QQ
Sbjct: 197 NQQ 199
Score = 49 (22.3 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMN--GVYCSS--RPMSI 44
+I D T+ +KG F+ F + E A+ N G + + +P+ +
Sbjct: 49 IIKDKRTNVSKGCAFITFSTKEEADNALNTTNESGTFLENMNKPLQV 95
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 125 (49.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 42/168 (25%), Positives = 80/168 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + +++G+GFV F + +A+ +MNG + + +I V +K Q +
Sbjct: 221 KVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGK--AIFVGRAQKKVERQTELK 277
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + TR QG ++V LD + D+ LR+ F+ FG I S K+ +
Sbjct: 278 RKFEQMK---QDRITRYQG-------VNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMM 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164
KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 115 (45.5 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 36/109 (33%), Positives = 54/109 (49%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S IF+ LD + +K L + FS FG ILS K+ KG GFV F ++ AE A
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
+ K+ G + + V + G K+ + L A A++ T V +NF
Sbjct: 155 IDKMNGMLLNDRKVFV--GRFKSRKEREAE---LGARAKEFTNVYIKNF 198
Score = 90 (36.7 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV---GK--GCGFVQFANRKDAEVALQKLQ 143
+++ D+ D+ L+E F +G LSVK+ GK G GFV F +DA+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMN 252
Query: 144 GTAI-GK 149
G + GK
Sbjct: 253 GKDLNGK 259
Score = 79 (32.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGYGFV F + RA+ +MNG+ + R + +
Sbjct: 129 KVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV 170
Score = 56 (24.8 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY +V F + RA+ MN +P+ I
Sbjct: 41 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 84
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 130 (50.8 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 42/152 (27%), Positives = 74/152 (48%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D ++ ++G+GFV F + +A+ +MNG S R + + A +K Q +
Sbjct: 221 KVMRD-DSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRA--QKRVERQNELK 277
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + TR QG ++V LD + D+ LR+ F+ +G I S K+
Sbjct: 278 RRFEQMK---QDRLTRYQG-------VNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMT 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIG 148
KG GFV F++ ++A A+ ++ G +G
Sbjct: 328 EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Score = 101 (40.6 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 30/106 (28%), Positives = 50/106 (47%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S +F+ L+ + +K L + FS FG ILS K+ +G GFV F + A+ A
Sbjct: 95 KSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQNA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNN 184
++ + G + + V + GH ++ R + AL YV N
Sbjct: 155 IRTMNGMLLNDRKVFV--GHFKSRRE-REAELGARALEFTNIYVKN 197
Score = 99 (39.9 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKI---PVG--KGCGFVQFANRKDAEVALQKLQ 143
I+V L DV ++ L++ FS FG+ILSVK+ G +G GFV F +DA+ A+ +
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMN 252
Query: 144 GTAI 147
G +
Sbjct: 253 GKEV 256
Score = 60 (26.2 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D + R G+GFV F A+ MNG+ + R + +
Sbjct: 129 KVVCDDHGSR--GFGFVHFETHEAAQNAIRTMNGMLLNDRKVFV 170
Score = 55 (24.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY ++ F + RA+ MN +P+ I
Sbjct: 41 RVCRDVATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRI 84
>ZFIN|ZDB-GENE-051120-114 [details] [associations]
symbol:myef2 "myelin expression factor 2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-051120-114 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804
OrthoDB:EOG4VDPZN EMBL:BC108001 IPI:IPI00656464
RefSeq:NP_001032500.1 UniGene:Dr.77011 ProteinModelPortal:Q32PS6
SMR:Q32PS6 PRIDE:Q32PS6 GeneID:641483 KEGG:dre:641483
NextBio:20901587 ArrayExpress:Q32PS6 Bgee:Q32PS6 Uniprot:Q32PS6
Length = 557
Score = 126 (49.4 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 38/109 (34%), Positives = 57/109 (52%)
Query: 53 SGYQQQCSSQALVLAGGPASNGTRVQG-SDGESNNATIFVGALDSDVSDKDLREPFSHFG 111
SG+ + SS + G + G SD IFV L D+S + L+E FSH G
Sbjct: 445 SGFDRMSSSMDMSRGFGQFGGSGYMGGMSDRSKGGCQIFVRNLSYDLSWQKLKEKFSHCG 504
Query: 112 EIL--SVKIPVGK--GCGFVQFANRKDAEVALQKLQGTAI-GKQT-VRL 154
+++ +K+ GK GCG V+F + + AE A + + GT I G++ VRL
Sbjct: 505 QVMYAEIKMENGKSKGCGTVRFDSPESAEKACRLMNGTKINGREVDVRL 553
Score = 38 (18.4 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 10 RTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+++G G V F E +A+ NG R M +
Sbjct: 250 KSRGMGTVTFEQPLEAVQAISMFNGQMLFDRQMHV 284
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 109 (43.4 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCG------FVQFANRK 133
S S ++ +F+G L V ++ L++ FS FGE+ V+I KG G FV FA
Sbjct: 34 SSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEG 93
Query: 134 DAEVALQKLQGTAIGKQTVRLS 155
DA A + G + + +R+S
Sbjct: 94 DALSAKDAMDGKGLLGRPLRIS 115
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 109 (43.4 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 19/54 (35%), Positives = 35/54 (64%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASG 54
++++D +DR+KG+GFV F +E +A++E NG + R + +D A K++ G
Sbjct: 64 QIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLG 117
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 129 (50.5 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 47/172 (27%), Positives = 84/172 (48%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+++ D + R+KG G+V F DE+ + A I++ G P+ +A +A +Q +
Sbjct: 204 QIVKDRVSGRSKGVGYVEFKDESSVAPA-IQLTGQKLLGIPI---IAQLTEAEKNRQARN 259
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIP- 119
S+A S+G + ++VG + + + DL+ F FGE+ V++
Sbjct: 260 SEA--------SSGNKHSAPFHR-----LYVGNIHFSIDENDLQSVFEPFGELEFVQLQK 306
Query: 120 --VGK--GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHN---PGNKQ 164
G+ G GFVQF + A AL+K+ G +G + +R+ G++ P N Q
Sbjct: 307 DETGRSRGYGFVQFRDPNQAREALEKMNGYDLGGRAIRVGLGNDKFTPENTQ 358
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 92 (37.4 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ D+ D+ L++ F FG LSVK+ KG GFV F +DA+ A+ ++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 144 G 144
G
Sbjct: 253 G 253
Score = 72 (30.4 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
V+ D N +KGYGFV F RA+ +MNG+ + R + +
Sbjct: 130 VVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
>ZFIN|ZDB-GENE-040809-2 [details] [associations]
symbol:rbm42 "RNA binding motif protein 42"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0002088 "lens development in camera-type eye" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040809-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0002088
HSSP:Q60900 CTD:79171 eggNOG:NOG306795 HOGENOM:HOG000154080
HOVERGEN:HBG060478 EMBL:AY648798 EMBL:BC095046 IPI:IPI00499960
RefSeq:NP_001003850.1 UniGene:Dr.77446 ProteinModelPortal:Q6DRG1
Ensembl:ENSDART00000058380 GeneID:445360 KEGG:dre:445360
GeneTree:ENSGT00390000002894 InParanoid:Q504F4 OrthoDB:EOG4J9N0T
NextBio:20832076 Bgee:Q6DRG1 Uniprot:Q6DRG1
Length = 402
Score = 127 (49.8 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 25/44 (56%), Positives = 30/44 (68%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D T +TKGYGFV F D N+ RAM EMNG Y SRP+ +
Sbjct: 333 KVVRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGRYVGSRPIKL 376
Score = 110 (43.8 bits), Expect = 0.00052, P = 0.00052
Identities = 32/117 (27%), Positives = 59/117 (50%)
Query: 44 IDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDL 103
+D +T K G Q++ + + +A G + T + + E+++ IF G L ++V+D L
Sbjct: 263 VDTSTEDKKKGKQEKVK-KCIRVAAGVSWEDTSLL--EWETDDFRIFCGDLGNEVNDDIL 319
Query: 104 REPFSHFGEILSVKIP----VGK--GCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154
FS + L K+ GK G GFV F + D A++++ G +G + ++L
Sbjct: 320 ARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGRYVGSRPIKL 376
>RGD|1561347 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1561347
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473968
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6429
RefSeq:NP_001102155.1 UniGene:Rn.63428 Ensembl:ENSRNOT00000013301
GeneID:362612 KEGG:rno:362612 OMA:KDRGETR NextBio:680578
Uniprot:G3V798
Length = 488
Score = 128 (50.1 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 46/164 (28%), Positives = 69/164 (42%)
Query: 9 DRTKGYGFVRFGDENERSRAMIEMNGV-YCSSRPMSIDVATPKKASGYQQQCSSQALVLA 67
D GYGFV F D + A+ E+NG C R + P++ Y
Sbjct: 32 DLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSY-----------G 80
Query: 68 GGPASNGTRVQGSD--GESNNAT--IFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-K 122
G + G R G D G + V L S S +DL++ GE+ G K
Sbjct: 81 SGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRK 140
Query: 123 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWR 166
G ++F + D + AL+KL GT + + +RL PG+++ R
Sbjct: 141 NEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED-KPGSRRRR 183
>MGI|MGI:1890577 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1890577 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295 OrthoDB:EOG41C6X9
ChiTaRS:SRSF4 EMBL:BC019437 EMBL:AB041587 IPI:IPI00139364
UniGene:Mm.2478 ProteinModelPortal:Q8VE97 SMR:Q8VE97 STRING:Q8VE97
PhosphoSite:Q8VE97 PaxDb:Q8VE97 PRIDE:Q8VE97 CleanEx:MM_SFRS4
Genevestigator:Q8VE97 GermOnline:ENSMUSG00000028911 Uniprot:Q8VE97
Length = 489
Score = 128 (50.1 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 46/164 (28%), Positives = 69/164 (42%)
Query: 9 DRTKGYGFVRFGDENERSRAMIEMNGV-YCSSRPMSIDVATPKKASGYQQQCSSQALVLA 67
D GYGFV F D + A+ E+NG C R + P++ Y
Sbjct: 32 DLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSY-----------G 80
Query: 68 GGPASNGTRVQGSD--GESNNAT--IFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-K 122
G + G R G D G + V L S S +DL++ GE+ G K
Sbjct: 81 SGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRK 140
Query: 123 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWR 166
G ++F + D + AL+KL GT + + +RL PG+++ R
Sbjct: 141 NEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED-KPGSRRRR 183
>UNIPROTKB|Q06A99 [details] [associations]
symbol:SRSF4 "SFRS4" species:9823 "Sus scrofa" [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:FP236541 EMBL:DQ972965 RefSeq:NP_001070684.1
UniGene:Ssc.11128 Ensembl:ENSSSCT00000003983 GeneID:768101
KEGG:ssc:768101 Uniprot:Q06A99
Length = 491
Score = 128 (50.1 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 46/164 (28%), Positives = 69/164 (42%)
Query: 9 DRTKGYGFVRFGDENERSRAMIEMNGV-YCSSRPMSIDVATPKKASGYQQQCSSQALVLA 67
D GYGFV F D + A+ E+NG C R + P++ Y
Sbjct: 32 DLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSY-----------G 80
Query: 68 GGPASNGTRVQGSD--GESNNAT--IFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-K 122
G + G R G D G + V L S S +DL++ GE+ G K
Sbjct: 81 SGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRK 140
Query: 123 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWR 166
G ++F + D + AL+KL GT + + +RL PG+++ R
Sbjct: 141 NEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED-KPGSRRRR 183
>UNIPROTKB|A7MB38 [details] [associations]
symbol:SFRS4 "SFRS4 protein" species:9913 "Bos taurus"
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:DAAA02006322 EMBL:BC151318 IPI:IPI00692721
RefSeq:NP_001094701.1 UniGene:Bt.28464 STRING:A7MB38
Ensembl:ENSBTAT00000037984 GeneID:614310 KEGG:bta:614310
InParanoid:A7MB38 NextBio:20899050 Uniprot:A7MB38
Length = 493
Score = 128 (50.1 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 46/164 (28%), Positives = 69/164 (42%)
Query: 9 DRTKGYGFVRFGDENERSRAMIEMNGV-YCSSRPMSIDVATPKKASGYQQQCSSQALVLA 67
D GYGFV F D + A+ E+NG C R + P++ Y
Sbjct: 32 DLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSY-----------G 80
Query: 68 GGPASNGTRVQGSD--GESNNAT--IFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-K 122
G + G R G D G + V L S S +DL++ GE+ G K
Sbjct: 81 SGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRK 140
Query: 123 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWR 166
G ++F + D + AL+KL GT + + +RL PG+++ R
Sbjct: 141 NEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED-KPGSRRRR 183
>UNIPROTKB|Q08170 [details] [associations]
symbol:SRSF4 "Serine/arginine-rich splicing factor 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 EMBL:AL357500 GO:GO:0016607
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0048025 eggNOG:COG0724
GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295
EMBL:AL590729 KO:K12893 EMBL:L14076 EMBL:BT007415 EMBL:BC002781
EMBL:AC004236 IPI:IPI00000015 PIR:A48133 RefSeq:NP_005617.2
UniGene:Hs.469970 ProteinModelPortal:Q08170 SMR:Q08170
IntAct:Q08170 MINT:MINT-1410521 STRING:Q08170 PhosphoSite:Q08170
DMDM:20981726 PaxDb:Q08170 PeptideAtlas:Q08170 PRIDE:Q08170
DNASU:6429 Ensembl:ENST00000373795 GeneID:6429 KEGG:hsa:6429
UCSC:uc001bro.3 CTD:6429 GeneCards:GC01M029474 H-InvDB:HIX0160019
HGNC:HGNC:10786 HPA:HPA050975 MIM:601940 neXtProt:NX_Q08170
PharmGKB:PA35702 InParanoid:Q08170 OMA:REHAKSE OrthoDB:EOG41C6X9
PhylomeDB:Q08170 ChiTaRS:SRSF4 GenomeRNAi:6429 NextBio:24969
ArrayExpress:Q08170 Bgee:Q08170 CleanEx:HS_SFRS4
Genevestigator:Q08170 GermOnline:ENSG00000116350 Uniprot:Q08170
Length = 494
Score = 128 (50.1 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 46/164 (28%), Positives = 69/164 (42%)
Query: 9 DRTKGYGFVRFGDENERSRAMIEMNGV-YCSSRPMSIDVATPKKASGYQQQCSSQALVLA 67
D GYGFV F D + A+ E+NG C R + P++ Y
Sbjct: 32 DLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSY-----------G 80
Query: 68 GGPASNGTRVQGSD--GESNNAT--IFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-K 122
G + G R G D G + V L S S +DL++ GE+ G K
Sbjct: 81 SGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRK 140
Query: 123 GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWR 166
G ++F + D + AL+KL GT + + +RL PG+++ R
Sbjct: 141 NEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED-KPGSRRRR 183
>CGD|CAL0005693 [details] [associations]
symbol:orf19.444 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 108 (43.1 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 33/111 (29%), Positives = 52/111 (46%)
Query: 50 KKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSH 109
KKA+ Y + + PA +V + + +FVG L D +D+ L+E FS
Sbjct: 23 KKAASYLHSMQNSSTTKIN-PAK---QVTAPNWNPKHFRLFVGNLGPDGNDELLKEAFSK 78
Query: 110 FGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154
+ + V +P+ KG GFV F +D A Q++ G IG+ V+L
Sbjct: 79 YPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYLHAFQEMNGKYIGQHPVQL 129
Score = 97 (39.2 bits), Expect = 0.00091, P = 0.00091
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI---DVATPKK 51
V ID T + KG+GFV FG + A EMNG Y P+ + + + PKK
Sbjct: 87 VPIDRKTSKNKGFGFVAFGKSEDYLHAFQEMNGKYIGQHPVQLKRAESSVPKK 139
>UNIPROTKB|Q5A297 [details] [associations]
symbol:CaO19.444 "Potential RNA binding protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 108 (43.1 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 33/111 (29%), Positives = 52/111 (46%)
Query: 50 KKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSH 109
KKA+ Y + + PA +V + + +FVG L D +D+ L+E FS
Sbjct: 23 KKAASYLHSMQNSSTTKIN-PAK---QVTAPNWNPKHFRLFVGNLGPDGNDELLKEAFSK 78
Query: 110 FGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154
+ + V +P+ KG GFV F +D A Q++ G IG+ V+L
Sbjct: 79 YPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDYLHAFQEMNGKYIGQHPVQL 129
Score = 97 (39.2 bits), Expect = 0.00091, P = 0.00091
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI---DVATPKK 51
V ID T + KG+GFV FG + A EMNG Y P+ + + + PKK
Sbjct: 87 VPIDRKTSKNKGFGFVAFGKSEDYLHAFQEMNGKYIGQHPVQLKRAESSVPKK 139
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 125 (49.1 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 36/117 (30%), Positives = 55/117 (47%)
Query: 63 ALVLAGGPA--SNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI-- 118
A ++GG + G+++ S + ++ +F+G L D S KDL E S FGE++ I
Sbjct: 4 ATEMSGGAEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT 63
Query: 119 -PV---GKGCGFVQFANRKDAEVALQ----KLQGTAIGKQTVRLSSGHNPGNKQWRG 167
PV +G GFV F + E L+ KL G I + + G P K + G
Sbjct: 64 DPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVG 120
>UNIPROTKB|F1NJ04 [details] [associations]
symbol:SRSF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02043941 IPI:IPI00574862
Ensembl:ENSGALT00000002148 Uniprot:F1NJ04
Length = 222
Score = 122 (48.0 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 45/159 (28%), Positives = 68/159 (42%)
Query: 14 YGFVRFGDENERSRAMIEMNGV-YCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPAS 72
YGFV F D + A+ E+NG C R + P++ S Y G +
Sbjct: 38 YGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDSSY-----------GSGRSG 86
Query: 73 NGTRVQGSD--GESNNAT--IFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-KGCGFV 127
G R G D G + V L S S +DL++ GE+ G K G +
Sbjct: 87 YGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVI 146
Query: 128 QFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWR 166
+F + D + AL+KL GT + + +RL PG+++ R
Sbjct: 147 EFKSYSDMKRALEKLDGTEVNGRKIRLVEDR-PGSRRRR 184
>FB|FBgn0034572 [details] [associations]
symbol:CG9346 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
eggNOG:COG0724 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 EMBL:AY069521
UniGene:Dm.2090 ProteinModelPortal:Q7K0X5 PaxDb:Q7K0X5 PRIDE:Q7K0X5
FlyBase:FBgn0034572 InParanoid:Q7K0X5 OrthoDB:EOG469P8S
ArrayExpress:Q7K0X5 Bgee:Q7K0X5 Uniprot:Q7K0X5
Length = 958
Score = 130 (50.8 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 35/97 (36%), Positives = 54/97 (55%)
Query: 72 SNGTRVQGS-D-GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI--PV------- 120
S+ ++ GS D G+ N +++G L+ +S++ L E F +G + S+KI P
Sbjct: 199 SSSSKESGSFDTGDPNTTNLYLGNLNPKISEQQLMEIFGRYGPLASIKIMWPRSEEEKQR 258
Query: 121 GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157
G+ CGFV + +RKDAE AL+ L G I +RL G
Sbjct: 259 GRNCGFVAYMSRKDAERALKTLNGRYIMGYEMRLGWG 295
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 114 (45.2 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
K++ D +T +KGY F+ F + A+ MNG Y +RP+++ A K + G + +
Sbjct: 88 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSA 147
Query: 61 SQALVLAGGPASNGTR 76
++ L+ A P S R
Sbjct: 148 AERLLAAQNPLSQADR 163
Score = 94 (38.1 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 31/100 (31%), Positives = 50/100 (50%)
Query: 87 ATIFVGALDSDVSDKDLREPFSHFGEILSV-KI---P-VG--KGCGFVQFANRKDAEVAL 139
A IF+G LD ++ +K L + FS FG IL KI P G KG F+ FA+ ++ A+
Sbjct: 57 ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 116
Query: 140 QKLQGTAIGKQTVRLSSGHNPGNKQWR-GDHINLIALAQD 178
+ + G + + + +S +K R G + AQ+
Sbjct: 117 EAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQN 156
Score = 62 (26.9 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 5 DSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48
D T + +GYGFV F E + A+ MN + +P+ ++ A+
Sbjct: 4 DRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKAS 47
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 107 (42.7 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 25/90 (27%), Positives = 45/90 (50%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEV 137
S+ +FVG L D +++ L + FS +G+I V + +G GFV F N DA+
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 138 ALQKLQGTAIGKQTVRLSSGHNPGNKQWRG 167
A+ + G ++ + +R+ + + RG
Sbjct: 63 AMMAMNGKSVDGRQIRVDQAGKSSDNRSRG 92
Score = 87 (35.7 bits), Expect = 0.00099, P = 0.00099
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVA---TPKKASGYQ 56
V+ D T R++G+GFV F + ++ AM+ MNG R + +D A + ++ GY+
Sbjct: 37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYR 94
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 128 (50.1 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 38/149 (25%), Positives = 70/149 (46%)
Query: 3 IIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQ 62
++ R++G+GFV F + + RA+ EMNG + R + + A Q++ Q
Sbjct: 222 VMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRA--------QKRLERQ 273
Query: 63 ALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-- 120
+ R+Q G ++V LD + D+ LR+ F+ +G I S K+
Sbjct: 274 GELKRKFEQIKQERIQRYQG----VNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDG 329
Query: 121 --GKGCGFVQFANRKDAEVALQKLQGTAI 147
+G GFV F++ ++A A+ ++ G +
Sbjct: 330 GHSRGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 107 (42.7 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 33/109 (30%), Positives = 53/109 (48%)
Query: 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVA 138
+S IF+ +D + +K L + FS FG ILS K+ KG GFV F ++ A A
Sbjct: 95 KSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAANRA 154
Query: 139 LQKLQGTAIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187
++ + G + + V + GH K+ + + A A + T V +NF
Sbjct: 155 IETMNGMLLNDRKVFV--GHFKSRKEREAE---MGAKAVEFTNVYIKNF 198
Score = 80 (33.2 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ D+ + L+ F+ FG+ LSV + +G GFV F N DA A+ ++
Sbjct: 193 VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMN 252
Query: 144 G 144
G
Sbjct: 253 G 253
Score = 78 (32.5 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KV+ D N +KGYGFV F + +RA+ MNG+ + R + +
Sbjct: 129 KVVCDENG--SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFV 170
Score = 50 (22.7 bits), Expect = 9.5e-05, Sum P(2) = 9.5e-05
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D T R+ GY ++ F + A+ MN RP+ I
Sbjct: 41 RVCRDVITRRSLGYAYINFQQPADAECALDTMNYEVIKGRPIRI 84
>DICTYBASE|DDB_G0270436 [details] [associations]
symbol:DDB_G0270436 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270436 EMBL:AAFI02000005 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_646802.1
ProteinModelPortal:Q55BM9 EnsemblProtists:DDB0191059 GeneID:8617775
KEGG:ddi:DDB_G0270436 InParanoid:Q55BM9 OMA:DICNVFV
ProtClustDB:CLSZ2846937 Uniprot:Q55BM9
Length = 521
Score = 127 (49.8 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 48/179 (26%), Positives = 82/179 (45%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMN----G---VYCS-SRPMSIDVATPKKA 52
KV+++ T + GYGFVRF + A+ MN G + C S+P + +P
Sbjct: 51 KVMVNIKTGNSLGYGFVRFLNPENACEAIKNMNRYQVGYKTLLCKLSKPSNSPPVSPFVG 110
Query: 53 SGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGE 112
+ S GG ++ ++ + SN T++V L ++D L FS FGE
Sbjct: 111 NNGNGGISCCVPDSNGGATTSPSQTEQQRDPSN--TLYVRVLSPTITDAILNSTFSQFGE 168
Query: 113 ILSVKIPV----GKG--CGFVQFANRKDAEVALQKLQGTAI-GKQTVRLSSGHNPGNKQ 164
++ ++ + GK G ++F+N + ALQ + G+ I G+ + + N G KQ
Sbjct: 169 VIEAQVLIDASSGKSKRAGVIKFSNIHYSTNALQSMSGSLILGETPLVVKYAPN-GKKQ 226
>UNIPROTKB|F1NMD7 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000060 "protein
import into nucleus, translocation" evidence=IEA] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0033120 "positive regulation of RNA splicing" evidence=IEA]
[GO:0033554 "cellular response to stress" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=IEA] [GO:0048306 "calcium-dependent
protein binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0090316 "positive regulation of
intracellular protein transport" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0000060 GO:GO:0090316 GO:GO:0071013
GO:GO:0017069 GO:GO:0045292 GO:GO:0036002 GO:GO:0033120
GO:GO:0005487 IPI:IPI00593663 GeneTree:ENSGT00390000002792
OMA:CAFVQYT EMBL:AADN02028638 PRIDE:F1NMD7
Ensembl:ENSGALT00000007249 Uniprot:F1NMD7
Length = 420
Score = 126 (49.4 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 71 ASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFA 130
AS R+ D + T++VG L +++ DLR F FGEI ++ + + C F+QFA
Sbjct: 217 ASTMPRLDPPD-DKTITTLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQFA 275
Query: 131 NRKDAEVALQK 141
R+ AEVA +K
Sbjct: 276 TRQAAEVAAEK 286
>UNIPROTKB|Q5ZM16 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006913 "nucleocytoplasmic
transport" evidence=ISS] [GO:0033120 "positive regulation of RNA
splicing" evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0090316 "positive regulation of intracellular
protein transport" evidence=ISS] [GO:0005487 "nucleocytoplasmic
transporter activity" evidence=ISS] [GO:0017069 "snRNA binding"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0033554 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0090316 GO:GO:0017069
eggNOG:NOG277760 HOGENOM:HOG000171086 KO:K12872 GO:GO:0045292
GO:GO:0036002 GO:GO:0033120 GO:GO:0005487 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW EMBL:AJ719568 IPI:IPI00593663
RefSeq:NP_001006151.1 UniGene:Gga.4751 HSSP:Q6PHZ5
ProteinModelPortal:Q5ZM16 SMR:Q5ZM16 STRING:Q5ZM16 GeneID:416270
KEGG:gga:416270 InParanoid:Q5ZM16 NextBio:20819755 Uniprot:Q5ZM16
Length = 420
Score = 126 (49.4 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 71 ASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFA 130
AS R+ D + T++VG L +++ DLR F FGEI ++ + + C F+QFA
Sbjct: 217 ASTMPRLDPPD-DKTITTLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQFA 275
Query: 131 NRKDAEVALQK 141
R+ AEVA +K
Sbjct: 276 TRQAAEVAAEK 286
>ZFIN|ZDB-GENE-040426-2298 [details] [associations]
symbol:rbm22 "RNA binding motif protein 22"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0009790 "embryo development"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0017069
"snRNA binding" evidence=ISS] [GO:0036002 "pre-mRNA binding"
evidence=ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 ZFIN:ZDB-GENE-040426-2298 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0009790 GO:GO:0017069 eggNOG:NOG277760
HOGENOM:HOG000171086 KO:K12872 OMA:ILADKAC GO:GO:0045292
GO:GO:0036002 GO:GO:0033120 HSSP:Q9H0Z9 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW EMBL:AY648794 EMBL:BC065892
IPI:IPI00487656 RefSeq:NP_998379.1 RefSeq:XP_003200934.1
UniGene:Dr.32898 ProteinModelPortal:Q6NZZ9 SMR:Q6NZZ9 STRING:Q6NZZ9
PRIDE:Q6NZZ9 Ensembl:ENSDART00000003983 Ensembl:ENSDART00000122126
GeneID:100536641 GeneID:406495 KEGG:dre:100536641 KEGG:dre:406495
GeneTree:ENSGT00390000002792 InParanoid:Q6NZZ9 NextBio:20818079
Bgee:Q6NZZ9 Uniprot:Q6NZZ9
Length = 425
Score = 126 (49.4 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 71 ASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFA 130
AS R+ D +S T+++G L +V+D +LR F FGEI ++ I + C F+QFA
Sbjct: 217 ASTMPRLDVPDDKSIT-TLYIGGLGENVTDSELRNHFYQFGEIRTITIVQRQQCAFIQFA 275
Query: 131 NRKDAEVALQK 141
R+ AE A +K
Sbjct: 276 TRQAAETAAEK 286
>ZFIN|ZDB-GENE-041008-192 [details] [associations]
symbol:rbm15 "RNA binding motif protein 15"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-041008-192 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921 Pfam:PF07744
PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 GeneTree:ENSGT00530000063730
OMA:DYLVMIV EMBL:BX324132 IPI:IPI00902274
Ensembl:ENSDART00000111617 Bgee:F1RCY7 Uniprot:F1RCY7
Length = 855
Score = 129 (50.5 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 38/147 (25%), Positives = 66/147 (44%)
Query: 41 PMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSD 100
P+ ++ ++ + Y+ + + P + D + N T+F+G LD V++
Sbjct: 263 PLPRELEREREFAFYEARARPAYIAERAAPFREEDFISPEDDQRANRTLFLGNLDITVTE 322
Query: 101 KDLREPFSHFGEILSVKI--PV-GKGC--GFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155
DLR F FG I V I P G+ GF++F N A A + G +G+ +++
Sbjct: 323 NDLRRAFERFGTITEVDIKRPTRGQSSTYGFLKFENLDMAHRAKISMSGKVVGRNPIKIG 382
Query: 156 SGH-NPGNKQW---RGDHINLIALAQD 178
G P + W G + L ALA++
Sbjct: 383 YGKATPTTRLWVGGLGPWVPLTALARE 409
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 125 (49.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 42/168 (25%), Positives = 79/168 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
KV+ D + ++KG+GFV F + +A+ EMNG + + + + A K + + +
Sbjct: 221 KVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRT 279
Query: 61 SQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV 120
+ + TR Q ++V LD + D+ LR+ FS FG I S K+ +
Sbjct: 280 FEQM-----KQDRITRYQV-------VNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM 327
Query: 121 ----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164
KG GFV F++ ++A A+ ++ G + + + ++ +Q
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 375
Score = 99 (39.9 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQ 143
+++ D+ D+ L++ F FG LSVK+ KG GFV F +DA+ A+ ++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 144 GTAI-GKQ 150
G + GKQ
Sbjct: 253 GKELNGKQ 260
Score = 72 (30.4 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
V+ D N +KGYGFV F RA+ +MNG+ + R + +
Sbjct: 130 VVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFV 170
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 85 (35.0 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 73 NGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGF 126
+G V S S+ IF+ L D + L + F FG + +VK+ KG GF
Sbjct: 232 SGVNVASS--ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 289
Query: 127 VQFANRKDAEVALQKLQGTAIGKQTVRL 154
V N ++A +A+ L G +G +T+++
Sbjct: 290 VTMTNYEEAAMAIASLNGYRLGDKTLQV 317
Score = 81 (33.6 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
K+I D + GYGFV + + + RA+ +NG+ S+ + + VA P S
Sbjct: 50 KLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSES 102
Score = 80 (33.2 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 86 NATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVAL 139
+A +++ L ++ KD+ + F FG I++ ++ V +G F++F R +AE A+
Sbjct: 105 DANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAI 164
Query: 140 QKLQG 144
G
Sbjct: 165 ASFNG 169
Score = 76 (31.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 24/76 (31%), Positives = 36/76 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYC--SSRPMSID-VATP---KKASG 54
+V++D T ++G F+RF +E A+ NG SS P+++ A P K +
Sbjct: 136 RVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFAANPNQNKNMAL 195
Query: 55 YQQQCSSQALVLAGGP 70
Q C S A GGP
Sbjct: 196 LSQLCHSPARRF-GGP 210
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 89 (36.4 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 26/90 (28%), Positives = 45/90 (50%)
Query: 72 SNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCG 125
S+ + V + S+ IF+ L D + L + F FG + +VK+ KG G
Sbjct: 229 SSISSVNVASSASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 288
Query: 126 FVQFANRKDAEVALQKLQGTAIGKQTVRLS 155
FV N ++A +A+ L G +G +T+++S
Sbjct: 289 FVTMTNYEEAAMAIASLNGYRLGDKTLQVS 318
Score = 80 (33.2 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 86 NATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVAL 139
+A +++ L ++ KD+ + F FG I++ ++ V +G F++F R +AE A+
Sbjct: 105 DANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAI 164
Query: 140 QKLQG 144
G
Sbjct: 165 ASFNG 169
Score = 76 (31.8 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYC--SSRPMSID-VATPKKASGY-- 55
+V++D T ++G F+RF +E A+ NG SS P+++ A P ++
Sbjct: 136 RVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFAANPNQSKNMAL 195
Query: 56 -QQQCSSQALVLAGGP 70
Q C S A GGP
Sbjct: 196 LSQICHSPARRF-GGP 210
Score = 73 (30.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP 49
K+I D + GYGFV + + + RA+ +NG+ S+ + + A P
Sbjct: 50 KLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARP 98
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 106 (42.4 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 34/107 (31%), Positives = 53/107 (49%)
Query: 87 ATIFVGALDSDVSDKDLREPFSHFGEILSV-KIP------VGKGCGFVQFANRKDAEVAL 139
A IFVG LD +V +K L + FS FG IL V KI KG F+ FA+ + ++ AL
Sbjct: 100 ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTAL 159
Query: 140 QKLQGTAIGKQTVRLSSGHNPGNKQWR-GDHINLIALAQDATYVNNR 185
+ + G + + + +S +K R G + AQ+ + +R
Sbjct: 160 EAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDR 206
Score = 57 (25.1 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 16/64 (25%), Positives = 30/64 (46%)
Query: 5 DSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQAL 64
D T +G+GFV F E + A+ +N + +P+ ++ KAS +++ A
Sbjct: 47 DRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVN-----KASAHEKNMDVGAN 101
Query: 65 VLAG 68
+ G
Sbjct: 102 IFVG 105
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 106 (42.4 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 34/107 (31%), Positives = 53/107 (49%)
Query: 87 ATIFVGALDSDVSDKDLREPFSHFGEILSV-KIP------VGKGCGFVQFANRKDAEVAL 139
A IFVG LD +V +K L + FS FG IL V KI KG F+ FA+ + ++ AL
Sbjct: 100 ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTAL 159
Query: 140 QKLQGTAIGKQTVRLSSGHNPGNKQWR-GDHINLIALAQDATYVNNR 185
+ + G + + + +S +K R G + AQ+ + +R
Sbjct: 160 EAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDR 206
Score = 57 (25.1 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 16/64 (25%), Positives = 30/64 (46%)
Query: 5 DSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQAL 64
D T +G+GFV F E + A+ +N + +P+ ++ KAS +++ A
Sbjct: 47 DRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVN-----KASAHEKNMDVGAN 101
Query: 65 VLAG 68
+ G
Sbjct: 102 IFVG 105
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 92 (37.4 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 28/97 (28%), Positives = 47/97 (48%)
Query: 73 NGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGF 126
+G V G+ S+ IF+ L D + L + F FG + +VK+ KG GF
Sbjct: 232 SGVNVPGN--ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 289
Query: 127 VQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
V N ++A +A+ L G +G + +++S N +K
Sbjct: 290 VTMTNYEEASMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 86 (35.3 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 86 NATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVAL 139
+A +++ L ++ KD+ + FS FG I++ ++ V +G F++F R +AE A+
Sbjct: 105 DANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
Query: 140 QKLQG 144
G
Sbjct: 165 TSFNG 169
Score = 72 (30.4 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP 49
K+I D + GYGFV + + RA+ +NG+ S+ + + A P
Sbjct: 50 KLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98
Score = 69 (29.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYC--SSRPMSIDVA 47
+V++D T ++G F+RF +E A+ NG SS P+++ A
Sbjct: 136 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 91 (37.1 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 28/97 (28%), Positives = 47/97 (48%)
Query: 73 NGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGF 126
+G V G+ S+ IF+ L D + L + F FG + +VK+ KG GF
Sbjct: 232 SGVNVPGN--ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 289
Query: 127 VQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
V N ++A +A+ L G +G + +++S N +K
Sbjct: 290 VTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 88 (36.0 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 86 NATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVAL 139
+A +++ L ++ KD+ + FS FG I++ ++ V +G F++F R +AE A+
Sbjct: 105 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
Query: 140 QKLQG 144
G
Sbjct: 165 TSFNG 169
Score = 73 (30.8 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP 49
K+I D + GYGFV + + RA+ +NG+ S+ + + A P
Sbjct: 50 KLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARP 98
Score = 69 (29.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYC--SSRPMSIDVA 47
+V++D T ++G F+RF +E A+ NG SS P+++ A
Sbjct: 136 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 91 (37.1 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 28/97 (28%), Positives = 47/97 (48%)
Query: 73 NGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGF 126
+G V G+ S+ IF+ L D + L + F FG + +VK+ KG GF
Sbjct: 232 SGVNVPGN--ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 289
Query: 127 VQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
V N ++A +A+ L G +G + +++S N +K
Sbjct: 290 VTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 88 (36.0 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 86 NATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVAL 139
+A +++ L ++ KD+ + FS FG I++ ++ V +G F++F R +AE A+
Sbjct: 105 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
Query: 140 QKLQG 144
G
Sbjct: 165 TSFNG 169
Score = 73 (30.8 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP 49
K+I D + GYGFV + + RA+ +NG+ S+ + + A P
Sbjct: 50 KLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARP 98
Score = 69 (29.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYC--SSRPMSIDVA 47
+V++D T ++G F+RF +E A+ NG SS P+++ A
Sbjct: 136 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184
>UNIPROTKB|F1M2V8 [details] [associations]
symbol:Rbm9 "RNA binding protein fox-1 homolog"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
InterPro:IPR025670 Pfam:PF12414 IPI:IPI00778339
Ensembl:ENSRNOT00000006398 ArrayExpress:F1M2V8 Uniprot:F1M2V8
Length = 377
Score = 124 (48.7 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 38/127 (29%), Positives = 59/127 (46%)
Query: 35 VYCSSRPMSIDVA-TPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNATIFVGA 93
+Y SS+P + +P +G Q A G S + S+ +S + V
Sbjct: 60 LYGSSQPHGEQSSNSPSNQNGSLTQTEGGAQT--DGQQSQTQSSENSESKSTPKRLHVSN 117
Query: 94 LDSDVSDKDLREPFSHFGEILSVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAIGK 149
+ D DLR+ F FG+IL V+I KG GFV F N DA+ A +KL GT +
Sbjct: 118 IPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG 177
Query: 150 QTVRLSS 156
+ + +++
Sbjct: 178 RKIEVNN 184
>UNIPROTKB|F1LUP8 [details] [associations]
symbol:Rbm9 "RNA binding protein fox-1 homolog"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
InterPro:IPR025670 Pfam:PF12414 IPI:IPI00389932
Ensembl:ENSRNOT00000033626 ArrayExpress:F1LUP8 Uniprot:F1LUP8
Length = 380
Score = 124 (48.7 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 38/127 (29%), Positives = 59/127 (46%)
Query: 35 VYCSSRPMSIDVA-TPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNATIFVGA 93
+Y SS+P + +P +G Q A G S + S+ +S + V
Sbjct: 60 LYGSSQPHGEQSSNSPSNQNGSLTQTEGGAQT--DGQQSQTQSSENSESKSTPKRLHVSN 117
Query: 94 LDSDVSDKDLREPFSHFGEILSVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAIGK 149
+ D DLR+ F FG+IL V+I KG GFV F N DA+ A +KL GT +
Sbjct: 118 IPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG 177
Query: 150 QTVRLSS 156
+ + +++
Sbjct: 178 RKIEVNN 184
>DICTYBASE|DDB_G0291386 [details] [associations]
symbol:DDB_G0291386 "RNA recognition motif RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0291386 EMBL:AAFI02000177 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_635179.1
ProteinModelPortal:Q54ER1 EnsemblProtists:DDB0304622 GeneID:8628125
KEGG:ddi:DDB_G0291386 InParanoid:Q54ER1 Uniprot:Q54ER1
Length = 463
Score = 125 (49.1 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 37/113 (32%), Positives = 59/113 (52%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS 60
+VI+DS T ++GYGFV+F + E+ +A+I+MNG Y +++P+ ++ T K+ + Q S
Sbjct: 144 RVIMDSATGISRGYGFVKFASDVEKDKALIDMNGFYINNKPIKVNNPTHKRLNS---QTS 200
Query: 61 SQALVLAGGPASNGTRVQGSD---GESNNATIFVGALDSDVSDKDLREPFSHF 110
+ + + P + V D E TIF GA K L FS F
Sbjct: 201 TIPDLTSTDPNNTAIYVSQLDHYIDEGVLQTIF-GAYGEISYIKMLTNKFSAF 252
>UNIPROTKB|B0QYY7 [details] [associations]
symbol:RBFOX2 "RNA-binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z95114 EMBL:AL049748
HOVERGEN:HBG000044 EMBL:AL079295 HGNC:HGNC:9906 ChiTaRS:RBFOX2
HOGENOM:HOG000230971 EMBL:Z82217 IPI:IPI00878853 SMR:B0QYY7
STRING:B0QYY7 Ensembl:ENST00000408983 Uniprot:B0QYY7
Length = 200
Score = 118 (46.6 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 68 GGPASNG--TRVQGSDGESNNAT---IFVGALDSDVSDKDLREPFSHFGEILSVKIPVG- 121
GG ++G ++ Q S+ + +T + V + D DLR+ F FG+IL V+I
Sbjct: 110 GGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 169
Query: 122 ---KGCGFVQFANRKDAEVALQKLQGTAI 147
KG GFV F N DA+ A +KL GT +
Sbjct: 170 RGSKGFGFVTFENSADADRAREKLHGTVV 198
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 109 (43.4 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVA 138
S IF+ LD + +K + + FS FG ILS K+ + KG GFV F + A+ A
Sbjct: 117 SGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNA 176
Query: 139 LQKLQGTAI-GKQ 150
+QK+ G + GK+
Sbjct: 177 IQKVNGMLLAGKK 189
Score = 84 (34.6 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQG 144
++V + + L + F+ FG I S ++ KG GFV FAN ++AE A+Q L
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHD 274
Query: 145 TAIGKQTVRL 154
+ I ++L
Sbjct: 275 STIEGTDLKL 284
Score = 69 (29.3 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50
KV ID + +KGYGFV F E A+ ++NG+ + + + + P+
Sbjct: 150 KVAIDED-GFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPR 198
Score = 58 (25.5 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
+V D+ T + GY +V F + RAM MN +PM I
Sbjct: 62 RVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRI 105
>UNIPROTKB|K7EQ03 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC002115 HGNC:HGNC:28117
Ensembl:ENST00000592202 Uniprot:K7EQ03
Length = 426
Score = 124 (48.7 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 25/44 (56%), Positives = 30/44 (68%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KVI D T +TKGYGFV F D ++ RAM EMNG Y SRP+ +
Sbjct: 357 KVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 400
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 91 (37.1 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 28/97 (28%), Positives = 47/97 (48%)
Query: 73 NGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGF 126
+G V G+ S+ IF+ L D + L + F FG + +VK+ KG GF
Sbjct: 232 SGVNVPGN--ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 289
Query: 127 VQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
V N ++A +A+ L G +G + +++S N +K
Sbjct: 290 VTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 90 (36.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 86 NATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVAL 139
+A +++ L +++ KD+ + FS FG I++ ++ V +G F++F R +AE A+
Sbjct: 105 DANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
Query: 140 QKLQG 144
G
Sbjct: 165 TSFNG 169
Score = 72 (30.4 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP 49
K+I D + GYGFV + + RA+ +NG+ S+ + + A P
Sbjct: 50 KLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98
Score = 69 (29.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYC--SSRPMSIDVA 47
+V++D T ++G F+RF +E A+ NG SS P+++ A
Sbjct: 136 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 91 (37.1 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 28/97 (28%), Positives = 47/97 (48%)
Query: 73 NGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGF 126
+G V G+ S+ IF+ L D + L + F FG + +VK+ KG GF
Sbjct: 232 SGVNVPGN--ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 289
Query: 127 VQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
V N ++A +A+ L G +G + +++S N +K
Sbjct: 290 VTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 88 (36.0 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 86 NATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVAL 139
+A +++ L ++ KD+ + FS FG I++ ++ V +G F++F R +AE A+
Sbjct: 105 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
Query: 140 QKLQG 144
G
Sbjct: 165 TSFNG 169
Score = 72 (30.4 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP 49
K+I D + GYGFV + + RA+ +NG+ S+ + + A P
Sbjct: 50 KLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98
Score = 69 (29.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYC--SSRPMSIDVA 47
+V++D T ++G F+RF +E A+ NG SS P+++ A
Sbjct: 136 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184
>RGD|1311838 [details] [associations]
symbol:Rbfox2 "RNA binding protein, fox-1 homolog (C. elegans)
2" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA;ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0003723
"RNA binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=ISO;ISS] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0010724 "regulation of definitive erythrocyte differentiation"
evidence=IEA;ISO] [GO:0021942 "radial glia guided migration of
Purkinje cell" evidence=ISO] [GO:0030520 "intracellular estrogen
receptor signaling pathway" evidence=ISO;ISS] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO;ISS]
[GO:0048813 "dendrite morphogenesis" evidence=ISO] [GO:0050885
"neuromuscular process controlling balance" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 RGD:1311838
GO:GO:0005634 GO:GO:0005737 GO:GO:0003714 GO:GO:0045892
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0008134 GO:GO:0030520 GO:GO:0000381
GO:GO:0010724 GeneTree:ENSGT00390000013767 KO:K14946
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 eggNOG:NOG293807
CTD:23543 EMBL:BC128766 IPI:IPI00950010 RefSeq:NP_001073364.1
UniGene:Rn.137551 ProteinModelPortal:A1A5R1 SMR:A1A5R1
Ensembl:ENSRNOT00000066431 GeneID:362950 KEGG:rno:362950
UCSC:RGD:1311838 InParanoid:A1A5R1 NextBio:681892
ArrayExpress:A1A5R1 Genevestigator:A1A5R1 Uniprot:A1A5R1
Length = 432
Score = 124 (48.7 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 38/127 (29%), Positives = 59/127 (46%)
Query: 35 VYCSSRPMSIDVA-TPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNATIFVGA 93
+Y SS+P + +P +G Q A G S + S+ +S + V
Sbjct: 112 LYGSSQPHGEQSSNSPSNQNGSLTQTEGGAQT--DGQQSQTQSSENSESKSTPKRLHVSN 169
Query: 94 LDSDVSDKDLREPFSHFGEILSVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAIGK 149
+ D DLR+ F FG+IL V+I KG GFV F N DA+ A +KL GT +
Sbjct: 170 IPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG 229
Query: 150 QTVRLSS 156
+ + +++
Sbjct: 230 RKIEVNN 236
>DICTYBASE|DDB_G0274995 [details] [associations]
symbol:DDB_G0274995 "Uncharacterized RNA-binding
protein YPL184C" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0274995 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000012 eggNOG:NOG314315 RefSeq:XP_644288.1
ProteinModelPortal:Q86AS4 EnsemblProtists:DDB0217588 GeneID:8619716
KEGG:ddi:DDB_G0274995 InParanoid:Q86AS4 OMA:WIENTRT Uniprot:Q86AS4
Length = 1104
Score = 128 (50.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 50/164 (30%), Positives = 78/164 (47%)
Query: 4 IDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMS-IDVATPKKASGYQQQCSSQ 62
+D + D K Y F FG E E R + + YC+ + A K + Q SQ
Sbjct: 923 MDVSEDDLK-YEFGSFG-ELESVRIL---HNKYCAFVNFKDTNEAINAKKGMHNQVLGSQ 977
Query: 63 ALVLA-GGPAS----NGTRVQG-SDGESNNA---TIFVGALDSDVSDKDLREPFSHFGEI 113
+V+ P S NG V + E+ N+ I++G + ++ +K++R+ +GEI
Sbjct: 978 YIVVNFRHPKSDDFINGVPVVPITTPETLNSISRAIYIGNVSDNLPEKEIRKECEKYGEI 1037
Query: 114 LSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157
S++I K C FV F N +A ALQ L G +G VR++ G
Sbjct: 1038 ESIRILRKKACAFVNFMNIPNATAALQTLNGKKLGDTIVRVNYG 1081
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 91 (37.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 28/97 (28%), Positives = 47/97 (48%)
Query: 73 NGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGF 126
+G V G+ S+ IF+ L D + L + F FG + +VK+ KG GF
Sbjct: 240 SGVNVPGN--ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 297
Query: 127 VQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
V N ++A +A+ L G +G + +++S N +K
Sbjct: 298 VTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 334
Score = 88 (36.0 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 86 NATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVAL 139
+A +++ L ++ KD+ + FS FG I++ ++ V +G F++F R +AE A+
Sbjct: 113 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 172
Query: 140 QKLQG 144
G
Sbjct: 173 TSFNG 177
Score = 72 (30.4 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP 49
K+I D + GYGFV + + RA+ +NG+ S+ + + A P
Sbjct: 58 KLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 106
Score = 69 (29.3 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYC--SSRPMSIDVA 47
+V++D T ++G F+RF +E A+ NG SS P+++ A
Sbjct: 144 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 192
>UNIPROTKB|F1N7X9 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00717903
UniGene:Bt.62303 GeneTree:ENSGT00390000002894 OMA:FIPHVLQ
EMBL:DAAA02046949 Ensembl:ENSBTAT00000017884 Uniprot:F1N7X9
Length = 448
Score = 124 (48.7 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 25/44 (56%), Positives = 30/44 (68%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KVI D T +TKGYGFV F D ++ RAM EMNG Y SRP+ +
Sbjct: 379 KVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 422
>UNIPROTKB|Q0P5L0 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:BC119904 IPI:IPI00717903 RefSeq:NP_001069673.1
UniGene:Bt.62303 ProteinModelPortal:Q0P5L0 STRING:Q0P5L0
GeneID:540172 KEGG:bta:540172 CTD:79171 eggNOG:NOG306795
HOGENOM:HOG000154080 HOVERGEN:HBG060478 NextBio:20878465
Uniprot:Q0P5L0
Length = 448
Score = 124 (48.7 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 25/44 (56%), Positives = 30/44 (68%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KVI D T +TKGYGFV F D ++ RAM EMNG Y SRP+ +
Sbjct: 379 KVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 422
>UNIPROTKB|B0QYY4 [details] [associations]
symbol:RBFOX2 "RNA-binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017325 Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 EMBL:Z95114 EMBL:AL049748 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 EMBL:AL079295 UniGene:Hs.282998
HGNC:HGNC:9906 ChiTaRS:RBFOX2 HOGENOM:HOG000230971 EMBL:Z82217
IPI:IPI01025028 SMR:B0QYY4 STRING:B0QYY4 Ensembl:ENST00000359369
UCSC:uc010gwu.3 Uniprot:B0QYY4
Length = 370
Score = 123 (48.4 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 63 ALVLAGGPASNG--TRVQGSDGESNNAT---IFVGALDSDVSDKDLREPFSHFGEILSVK 117
+L GG ++G ++ Q S+ + +T + V + D DLR+ F FG+IL V+
Sbjct: 62 SLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVE 121
Query: 118 IPVG----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156
I KG GFV F N DA+ A +KL GT + + + +++
Sbjct: 122 IIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 164
>UNIPROTKB|K7EP90 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC002115 HGNC:HGNC:28117
Ensembl:ENST00000589871 Uniprot:K7EP90
Length = 458
Score = 124 (48.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/44 (56%), Positives = 30/44 (68%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KVI D T +TKGYGFV F D ++ RAM EMNG Y SRP+ +
Sbjct: 389 KVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 432
>UNIPROTKB|J9P300 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 KO:K14946 InterPro:IPR025670
Pfam:PF12414 CTD:23543 EMBL:AAEX03007352 RefSeq:XP_862055.2
Ensembl:ENSCAFT00000049108 GeneID:481281 KEGG:cfa:481281
Uniprot:J9P300
Length = 376
Score = 123 (48.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 63 ALVLAGGPASNG--TRVQGSDGESNNAT---IFVGALDSDVSDKDLREPFSHFGEILSVK 117
+L GG ++G ++ Q S+ + +T + V + D DLR+ F FG+IL V+
Sbjct: 82 SLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVE 141
Query: 118 IPVG----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156
I KG GFV F N DA+ A +KL GT + + + +++
Sbjct: 142 IIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 184
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 27/93 (29%), Positives = 52/93 (55%)
Query: 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEV 137
S+ +F+G L+ D +++ L + FS +G+I V + +G GFV F N DA+
Sbjct: 2 SDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKD 61
Query: 138 ALQKLQGTAIGKQTVRLS-SGHNPGNKQ--WRG 167
A+ + G A+ + +R+ +G + G+++ +RG
Sbjct: 62 AMMAMNGKAVDGRQIRVDQAGKSSGDRRGGYRG 94
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 104 (41.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 85 NNAT--IFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAE 136
NNAT +FVG +D + +K L + FS FG+I ++++P+ +G FV++ DA+
Sbjct: 4 NNATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAK 63
Query: 137 VALQKLQGTAI-GKQ 150
AL + + GK+
Sbjct: 64 HALYNMNNFELNGKR 78
>UNIPROTKB|J9PA38 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431 EMBL:AAEX03013949
GeneID:403667 KEGG:cfa:403667 RefSeq:XP_003639909.1
Ensembl:ENSCAFT00000044157 Uniprot:J9PA38
Length = 135
Score = 104 (41.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIG 148
+++G L +V +KD++ FS +G +L + + G GFV+F + +DA+ A+ +L G +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLK--NGYGFVEFEDSRDADDAVYELNGKELC 61
Query: 149 KQTVRLSSGHNP 160
+ V + P
Sbjct: 62 GERVIVEHARGP 73
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 104 (41.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 85 NNAT--IFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAE 136
NNAT +FVG +D + +K L + FS FG+I ++++P+ +G FV++ DA+
Sbjct: 4 NNATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAK 63
Query: 137 VALQKLQGTAI-GKQ 150
AL + + GK+
Sbjct: 64 HALYNMNNFELNGKR 78
>MGI|MGI:1915285 [details] [associations]
symbol:Rbm42 "RNA binding motif protein 42" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1915285 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
GeneTree:ENSGT00390000002894 OrthoDB:EOG4J9N0T OMA:FIPHVLQ
EMBL:AK151000 EMBL:BC009148 EMBL:BC011286 EMBL:BC027372
EMBL:BC057928 IPI:IPI00126204 IPI:IPI00853826 RefSeq:NP_598454.2
UniGene:Mm.401747 ProteinModelPortal:Q91V81 SMR:Q91V81
STRING:Q91V81 PhosphoSite:Q91V81 PaxDb:Q91V81 PRIDE:Q91V81
Ensembl:ENSMUST00000042726 GeneID:68035 KEGG:mmu:68035
UCSC:uc009gfn.2 UCSC:uc009gfp.1 InParanoid:Q91V81 NextBio:326262
Bgee:Q91V81 CleanEx:MM_RBM42 Genevestigator:Q91V81 Uniprot:Q91V81
Length = 474
Score = 124 (48.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/44 (56%), Positives = 30/44 (68%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KVI D T +TKGYGFV F D ++ RAM EMNG Y SRP+ +
Sbjct: 405 KVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 448
>RGD|1306184 [details] [associations]
symbol:Rbm42 "RNA binding motif protein 42" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306184 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
OrthoDB:EOG4J9N0T EMBL:BC079321 IPI:IPI00365702
RefSeq:NP_001014181.2 UniGene:Rn.17083 ProteinModelPortal:Q6AXT7
STRING:Q6AXT7 PhosphoSite:Q6AXT7 GeneID:361545 KEGG:rno:361545
UCSC:RGD:1306184 InParanoid:Q6AXT7 NextBio:676676
Genevestigator:Q6AXT7 Uniprot:Q6AXT7
Length = 474
Score = 124 (48.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/44 (56%), Positives = 30/44 (68%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KVI D T +TKGYGFV F D ++ RAM EMNG Y SRP+ +
Sbjct: 405 KVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 448
>UNIPROTKB|Q6AXT7 [details] [associations]
symbol:Rbm42 "RNA-binding protein 42" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1306184 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
OrthoDB:EOG4J9N0T EMBL:BC079321 IPI:IPI00365702
RefSeq:NP_001014181.2 UniGene:Rn.17083 ProteinModelPortal:Q6AXT7
STRING:Q6AXT7 PhosphoSite:Q6AXT7 GeneID:361545 KEGG:rno:361545
UCSC:RGD:1306184 InParanoid:Q6AXT7 NextBio:676676
Genevestigator:Q6AXT7 Uniprot:Q6AXT7
Length = 474
Score = 124 (48.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/44 (56%), Positives = 30/44 (68%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KVI D T +TKGYGFV F D ++ RAM EMNG Y SRP+ +
Sbjct: 405 KVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 448
>UNIPROTKB|F1RM56 [details] [associations]
symbol:RBM42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002894 OMA:FIPHVLQ EMBL:FP243365
RefSeq:XP_003127114.1 UniGene:Ssc.7915 Ensembl:ENSSSCT00000003210
GeneID:100520432 KEGG:ssc:100520432 Uniprot:F1RM56
Length = 477
Score = 124 (48.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/44 (56%), Positives = 30/44 (68%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KVI D T +TKGYGFV F D ++ RAM EMNG Y SRP+ +
Sbjct: 408 KVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 451
>UNIPROTKB|F1P8W1 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017325
Pfam:PF00076 PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:AAEX03007352 Ensembl:ENSCAFT00000002662
Uniprot:F1P8W1
Length = 390
Score = 123 (48.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 63 ALVLAGGPASNG--TRVQGSDGESNNAT---IFVGALDSDVSDKDLREPFSHFGEILSVK 117
+L GG ++G ++ Q S+ + +T + V + D DLR+ F FG+IL V+
Sbjct: 92 SLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVE 151
Query: 118 IPVG----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156
I KG GFV F N DA+ A +KL GT + + + +++
Sbjct: 152 IIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 194
>UNIPROTKB|O43251 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010724 "regulation of
definitive erythrocyte differentiation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0042127 "regulation of cell
proliferation" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0003714 "transcription corepressor activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0042127 GO:GO:0008134 GO:GO:0016070 EMBL:AL049748
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724 KO:K14946
HOVERGEN:HBG000044 InterPro:IPR025670 Pfam:PF12414 eggNOG:NOG293807
EMBL:AY072786 EMBL:AF229058 EMBL:AY960684 EMBL:AL009266
EMBL:CR456559 EMBL:AK055213 EMBL:AK291460 EMBL:DQ778625
EMBL:AL079295 EMBL:BC013115 EMBL:BC025281 EMBL:AM419009
IPI:IPI00011618 IPI:IPI00179299 IPI:IPI00258168 IPI:IPI00258170
IPI:IPI00554810 IPI:IPI00843981 IPI:IPI00844525 IPI:IPI00844603
IPI:IPI00885127 IPI:IPI00937652 RefSeq:NP_001026865.1
RefSeq:NP_001076045.1 RefSeq:NP_001076046.1 RefSeq:NP_001076047.1
RefSeq:NP_001076048.1 RefSeq:NP_055124.1 UniGene:Hs.282998 PDB:2CQ3
PDBsum:2CQ3 ProteinModelPortal:O43251 SMR:O43251 IntAct:O43251
MINT:MINT-1437920 STRING:O43251 PhosphoSite:O43251 PaxDb:O43251
PRIDE:O43251 DNASU:23543 Ensembl:ENST00000262829
Ensembl:ENST00000405409 Ensembl:ENST00000414461
Ensembl:ENST00000416721 Ensembl:ENST00000438146
Ensembl:ENST00000449924 GeneID:23543 KEGG:hsa:23543 UCSC:uc003aoh.4
UCSC:uc003aoj.4 UCSC:uc003aok.4 UCSC:uc003aol.4 UCSC:uc003aom.4
UCSC:uc003aon.4 UCSC:uc003aoo.4 CTD:23543 GeneCards:GC22M036136
H-InvDB:HIX0016419 HGNC:HGNC:9906 HPA:HPA006240 MIM:612149
neXtProt:NX_O43251 PharmGKB:PA34272 InParanoid:O43251 OMA:HGEQSTN
ChiTaRS:RBFOX2 EvolutionaryTrace:O43251 GenomeRNAi:23543
NextBio:46058 ArrayExpress:O43251 Bgee:O43251 CleanEx:HS_RBM9
Genevestigator:O43251 GermOnline:ENSG00000100320 Uniprot:O43251
Length = 390
Score = 123 (48.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 63 ALVLAGGPASNG--TRVQGSDGESNNAT---IFVGALDSDVSDKDLREPFSHFGEILSVK 117
+L GG ++G ++ Q S+ + +T + V + D DLR+ F FG+IL V+
Sbjct: 92 SLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVE 151
Query: 118 IPVG----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156
I KG GFV F N DA+ A +KL GT + + + +++
Sbjct: 152 IIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 194
>UNIPROTKB|Q9BTD8 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC002115 HSSP:Q15427 CTD:79171 eggNOG:NOG306795
HOGENOM:HOG000154080 HOVERGEN:HBG060478 OrthoDB:EOG4J9N0T
EMBL:BC002868 EMBL:BC004204 EMBL:BC031682 IPI:IPI00021626
IPI:IPI00074329 IPI:IPI00550442 IPI:IPI00929470 RefSeq:NP_077297.2
UniGene:Hs.5086 ProteinModelPortal:Q9BTD8 SMR:Q9BTD8 IntAct:Q9BTD8
MINT:MINT-2876248 STRING:Q9BTD8 PhosphoSite:Q9BTD8 DMDM:74761247
PaxDb:Q9BTD8 PRIDE:Q9BTD8 DNASU:79171 Ensembl:ENST00000262633
Ensembl:ENST00000360475 GeneID:79171 KEGG:hsa:79171 UCSC:uc002oan.3
UCSC:uc002oap.3 UCSC:uc002oaq.3 GeneCards:GC19P036119
HGNC:HGNC:28117 HPA:HPA043671 MIM:613232 neXtProt:NX_Q9BTD8
PharmGKB:PA162400760 InParanoid:Q9BTD8 OMA:FIPHVLQ PhylomeDB:Q9BTD8
ChiTaRS:RBM42 GenomeRNAi:79171 NextBio:68133 Bgee:Q9BTD8
CleanEx:HS_RBM42 Genevestigator:Q9BTD8 Uniprot:Q9BTD8
Length = 480
Score = 124 (48.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/44 (56%), Positives = 30/44 (68%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KVI D T +TKGYGFV F D ++ RAM EMNG Y SRP+ +
Sbjct: 411 KVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 454
>UNIPROTKB|F1SPT7 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog"
species:9823 "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030520 GO:GO:0000381 GO:GO:0010724
GeneTree:ENSGT00390000013767 InterPro:IPR025670 Pfam:PF12414
OMA:HGEQSTN EMBL:CU633647 Ensembl:ENSSSCT00000000160 Uniprot:F1SPT7
Length = 392
Score = 123 (48.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 63 ALVLAGGPASNG--TRVQGSDGESNNAT---IFVGALDSDVSDKDLREPFSHFGEILSVK 117
+L GG ++G ++ Q S+ + +T + V + D DLR+ F FG+IL V+
Sbjct: 98 SLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVE 157
Query: 118 IPVG----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156
I KG GFV F N DA+ A +KL GT + + + +++
Sbjct: 158 IIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 200
>UNIPROTKB|F1PT81 [details] [associations]
symbol:RBM42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101661 EMBL:AAEX03001010 EMBL:AAEX03001009
Ensembl:ENSCAFT00000011116 Uniprot:F1PT81
Length = 483
Score = 124 (48.7 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 25/44 (56%), Positives = 30/44 (68%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44
KVI D T +TKGYGFV F D ++ RAM EMNG Y SRP+ +
Sbjct: 415 KVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 458
>UNIPROTKB|A6QPR6 [details] [associations]
symbol:RBFOX2 "RNA binding protein fox-1 homolog 2"
species:9913 "Bos taurus" [GO:0008134 "transcription factor
binding" evidence=ISS] [GO:0003714 "transcription corepressor
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0003714 GO:GO:0045892 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0008134 GO:GO:0030520 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 OrthoDB:EOG4NVZKS EMBL:BC149447
EMBL:BT026301 IPI:IPI00685735 IPI:IPI00886713 UniGene:Bt.3013
ProteinModelPortal:A6QPR6 SMR:A6QPR6 eggNOG:NOG293807
InParanoid:A6QPR6 Uniprot:A6QPR6
Length = 394
Score = 123 (48.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 63 ALVLAGGPASNG--TRVQGSDGESNNAT---IFVGALDSDVSDKDLREPFSHFGEILSVK 117
+L GG ++G ++ Q S+ + +T + V + D DLR+ F FG+IL V+
Sbjct: 100 SLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVE 159
Query: 118 IPVG----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156
I KG GFV F N DA+ A +KL GT + + + +++
Sbjct: 160 IIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 202
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 91 (37.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 28/97 (28%), Positives = 47/97 (48%)
Query: 73 NGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGF 126
+G V G+ S+ IF+ L D + L + F FG + +VK+ KG GF
Sbjct: 259 SGVNVPGN--ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 316
Query: 127 VQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163
V N ++A +A+ L G +G + +++S N +K
Sbjct: 317 VTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 353
Score = 88 (36.0 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 86 NATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVAL 139
+A +++ L ++ KD+ + FS FG I++ ++ V +G F++F R +AE A+
Sbjct: 132 DANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 191
Query: 140 QKLQG 144
G
Sbjct: 192 TSFNG 196
Score = 72 (30.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP 49
K+I D + GYGFV + + RA+ +NG+ S+ + + A P
Sbjct: 77 KLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 125
Score = 69 (29.3 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYC--SSRPMSIDVA 47
+V++D T ++G F+RF +E A+ NG SS P+++ A
Sbjct: 163 RVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 211
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 123 (48.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 41/161 (25%), Positives = 74/161 (45%)
Query: 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK--KASGYQQQC 59
V++ +++ +GFV F A+ +MNGV + + + A K + + +
Sbjct: 149 VVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKF 208
Query: 60 SSQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIP 119
+ ++ TR +G + ++V LD V + L E FS FG I S K+
Sbjct: 209 ELEKII-----RDMKTR-KGMN-------LYVKNLDDSVDNTKLEELFSEFGTITSCKVM 255
Query: 120 V-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155
V KG GFV+F+ ++A A+ K+ G +G + + +S
Sbjct: 256 VHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVS 296
Score = 109 (43.4 bits), Expect = 0.00071, P = 0.00071
Identities = 35/110 (31%), Positives = 52/110 (47%)
Query: 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIP-----VGKGCGFVQFANRKD 134
S+ S +FV LD + +K L + FS FG++LS K+ V KG GFVQF +
Sbjct: 24 SNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLS 83
Query: 135 AEVALQKLQGTAIGKQTVRL----SSGHNPGNKQWRGDHI-NLIALAQDA 179
A GT I Q + + S G ++ + ++ NL+ A DA
Sbjct: 84 VYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDA 133
>UNIPROTKB|F1NRZ4 [details] [associations]
symbol:LOC100859595 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0001569 "patterning of blood vessels"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007221
"positive regulation of transcription of Notch receptor target"
evidence=IEA] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=IEA] [GO:0048536 "spleen development"
evidence=IEA] [GO:0060412 "ventricular septum morphogenesis"
evidence=IEA] [GO:0060674 "placenta blood vessel development"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000122 InterPro:IPR012921
Pfam:PF07744 GO:GO:0045638 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
GO:GO:0007221 GeneTree:ENSGT00530000063730 OMA:DYLVMIV
EMBL:AADN02044860 IPI:IPI00578434 Ensembl:ENSGALT00000000546
Uniprot:F1NRZ4
Length = 957
Score = 124 (48.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 37/120 (30%), Positives = 56/120 (46%)
Query: 68 GGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIP-VGKG--- 123
G A+ + D + N T+F+G LD VS+ DLR F FG I V I G+G
Sbjct: 348 GAGAAGEEEISPEDDQRANRTLFLGNLDITVSETDLRRAFDRFGVITEVDIKRPGRGQTS 407
Query: 124 -CGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH-NPGNKQW---RGDHINLIALAQD 178
GF++F N A A + G + + +++ G P + W G + L ALA++
Sbjct: 408 TYGFLKFENLDMAHRAKLAMSGKVLLRNPIKIGYGKATPTTRLWVGGLGPWVPLAALARE 467
Score = 40 (19.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 17/65 (26%), Positives = 26/65 (40%)
Query: 16 FVRFGDENERSRAMIEMNG-VYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNG 74
FV F E +RA G + RP+ I+ G ++ SS++ L + G
Sbjct: 193 FVNFR-RPEDARAAKHARGRLVLYDRPLKIEAVYVGSGGGSSRRRSSRSPALLDKESPYG 251
Query: 75 TRVQG 79
T G
Sbjct: 252 TAAVG 256
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 88 (36.0 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 28/94 (29%), Positives = 45/94 (47%)
Query: 68 GGPASNGTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKI---PVG--- 121
G A+ T + + G IF+ L + + L + F FG + SVKI P
Sbjct: 385 GAAAAAATTL--ASGPGGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQC 442
Query: 122 KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155
KG GFV N +A +A++ L G +G + +++S
Sbjct: 443 KGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVS 476
Score = 79 (32.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 7 NTDRTKGYGFVRFGDENERSRAMIEMNGVYCSS 39
N +TKG GF+RF E +RA+I +NG SS
Sbjct: 285 NDTQTKGVGFIRFDKREEATRAIIALNGTTPSS 317
>RGD|1305770 [details] [associations]
symbol:Rbm22 "RNA binding motif protein 22" species:10116
"Rattus norvegicus" [GO:0000060 "protein import into nucleus,
translocation" evidence=IEA;ISO] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;ISS]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017069 "snRNA binding"
evidence=ISO;ISS] [GO:0033120 "positive regulation of RNA splicing"
evidence=ISO;ISS] [GO:0033554 "cellular response to stress"
evidence=ISO;ISS] [GO:0036002 "pre-mRNA binding" evidence=ISO;ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO;ISS]
[GO:0048306 "calcium-dependent protein binding" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0090316 "positive regulation of intracellular protein
transport" evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356 SMART:SM00360
RGD:1305770 GO:GO:0005634 GO:GO:0005737 GO:GO:0033554 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0000060
GO:GO:0090316 GO:GO:0071013 GO:GO:0017069 eggNOG:NOG277760
HOGENOM:HOG000171086 KO:K12872 OMA:ILADKAC GO:GO:0045292
GO:GO:0036002 GO:GO:0033120 GO:GO:0005487 CTD:55696
HOVERGEN:HBG083475 OrthoDB:EOG40S0FW HSSP:Q6PHZ5
GeneTree:ENSGT00390000002792 EMBL:BC097991 IPI:IPI00194439
RefSeq:NP_001020847.1 UniGene:Rn.105130 ProteinModelPortal:Q4V7D7
SMR:Q4V7D7 STRING:Q4V7D7 PRIDE:Q4V7D7 Ensembl:ENSRNOT00000026087
GeneID:307410 KEGG:rno:307410 UCSC:RGD:1305770 InParanoid:Q4V7D7
NextBio:657353 Genevestigator:Q4V7D7 GermOnline:ENSRNOG00000019235
Uniprot:Q4V7D7
Length = 420
Score = 123 (48.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 88 TIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQK 141
T++VG L +++ DLR F FGEI +V + + C F+QFA R+ AEVA +K
Sbjct: 233 TLYVGGLGDTITETDLRNHFYQFGEIRTVTVVQRQQCAFIQFATRQAAEVAAEK 286
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 87 (35.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKL 142
IFV L D + L + F FG + +VK+ KG GFV N ++A +A+ L
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316
Query: 143 QGTAIGKQTVRLS 155
G +G +T+++S
Sbjct: 317 NGYRLGDKTLQVS 329
Score = 80 (33.2 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 86 NATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVAL 139
+A +++ L ++ KD+ + F FG I++ ++ V +G F++F R +AE A+
Sbjct: 116 DANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAI 175
Query: 140 QKLQG 144
G
Sbjct: 176 ASFNG 180
Score = 76 (31.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 24/76 (31%), Positives = 36/76 (47%)
Query: 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYC--SSRPMSID-VATP---KKASG 54
+V++D T ++G F+RF +E A+ NG SS P+++ A P K +
Sbjct: 147 RVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFAANPNQNKNVAL 206
Query: 55 YQQQCSSQALVLAGGP 70
Q C S A GGP
Sbjct: 207 LSQICHSPARRF-GGP 221
Score = 68 (29.0 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 13 GYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53
GYGFV + + + RA+ +NG+ S+ + + A P S
Sbjct: 73 GYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSES 113
>POMBASE|SPBC1289.12 [details] [associations]
symbol:usp109 "U1 snRNP-associated protein Usp109"
species:4896 "Schizosaccharomyces pombe" [GO:0000395 "mRNA
5'-splice site recognition" evidence=IC] [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IC]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC1289.12 GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005685 GO:GO:0000395 PIR:T39363 RefSeq:NP_596836.2
GeneID:2540117 OrthoDB:EOG4HX8B5 NextBio:20801253 Uniprot:O94621
Length = 365
Score = 122 (48.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 41/145 (28%), Positives = 65/145 (44%)
Query: 16 FVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGT 75
F+ +E++ A +EM G +C R SI V + K S SS P + T
Sbjct: 129 FIWLANESDIQNAQVEMQGAFCLKR--SILVHSVK--SDKNTYLSSPGFYGTPQPLNQFT 184
Query: 76 RVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDA 135
+ NN ++V L +++ ++LR F HFGEIL + V G + FA R A
Sbjct: 185 -------DPNNTAVYVHQLPENITTQELRSYFLHFGEILYTQ--VNNNSGRIVFAQRYFA 235
Query: 136 EVALQKLQGTAIGKQTVRLSSGHNP 160
E A+ ++ + ++LS P
Sbjct: 236 EQAINEMNNFPLHGVRIQLSWARPP 260
>UNIPROTKB|F5GWK3 [details] [associations]
symbol:RBM22 "Pre-mRNA-splicing factor RBM22" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC008453
IPI:IPI00909290 HGNC:HGNC:25503 ProteinModelPortal:F5GWK3
SMR:F5GWK3 Ensembl:ENST00000540000 ArrayExpress:F5GWK3 Bgee:F5GWK3
Uniprot:F5GWK3
Length = 371
Score = 122 (48.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 88 TIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQK 141
T++VG L +++ DLR F FGEI ++ + + C F+QFA R+ AEVA +K
Sbjct: 184 TLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEK 237
>UNIPROTKB|G3V251 [details] [associations]
symbol:HNRNPC "Heterogeneous nuclear ribonucleoproteins
C1/C2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL135744 HGNC:HGNC:5035 ChiTaRS:HNRNPC
ProteinModelPortal:G3V251 SMR:G3V251 Ensembl:ENST00000554891
ArrayExpress:G3V251 Bgee:G3V251 Uniprot:G3V251
Length = 126
Score = 103 (41.3 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 30/91 (32%), Positives = 47/91 (51%)
Query: 71 ASNGTRVQGSDGESNNATIFVGALDSDVSDK-DLREPFSHFGEILSVKIPVGKGCGFVQF 129
ASN T +D S N+ +F+G L++ V K D+ FS +G+I+ V KG FVQ+
Sbjct: 2 ASNVTNK--TDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCS--VHKGFAFVQY 57
Query: 130 ANRKDAEVALQKLQGTAIGKQTVRLSSGHNP 160
N ++A A+ G I Q + ++ P
Sbjct: 58 VNERNARAAVAGEDGRMIAGQVLDINLAAEP 88
WARNING: HSPs involving 309 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.133 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 192 192 0.00096 110 3 11 22 0.50 32
31 0.43 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 559
No. of states in DFA: 587 (62 KB)
Total size of DFA: 155 KB (2093 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.93u 0.11s 19.04t Elapsed: 00:00:01
Total cpu time: 18.97u 0.11s 19.08t Elapsed: 00:00:01
Start: Fri May 10 23:27:23 2013 End: Fri May 10 23:27:24 2013
WARNINGS ISSUED: 2