Query 037126
Match_columns 192
No_of_seqs 117 out of 1692
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 08:56:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0148 Apoptosis-promoting RN 100.0 1.8E-28 4E-33 179.6 14.8 148 1-162 93-240 (321)
2 TIGR01659 sex-lethal sex-letha 99.9 1.3E-26 2.8E-31 182.3 15.4 132 1-162 138-277 (346)
3 KOG0117 Heterogeneous nuclear 99.9 3.1E-26 6.7E-31 178.0 13.7 164 1-166 114-337 (506)
4 TIGR01645 half-pint poly-U bin 99.9 2.9E-25 6.4E-30 183.6 17.0 145 1-164 138-288 (612)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.9E-24 6.3E-29 171.0 19.2 160 2-161 121-350 (352)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 8E-24 1.7E-28 168.5 17.6 131 1-161 34-172 (352)
7 KOG0145 RNA-binding protein EL 99.9 8.5E-25 1.8E-29 159.8 9.8 133 1-163 72-212 (360)
8 TIGR01622 SF-CC1 splicing fact 99.9 2.2E-23 4.8E-28 171.3 16.8 139 1-158 120-264 (457)
9 KOG0144 RNA-binding protein CU 99.9 4.1E-24 8.9E-29 165.6 9.5 137 2-167 66-213 (510)
10 TIGR01648 hnRNP-R-Q heterogene 99.9 1.3E-22 2.8E-27 167.7 17.9 130 7-163 177-310 (578)
11 TIGR01628 PABP-1234 polyadenyl 99.9 4.8E-23 1E-27 173.1 15.7 132 1-160 31-167 (562)
12 TIGR01628 PABP-1234 polyadenyl 99.9 9.6E-22 2.1E-26 165.3 15.6 146 2-160 210-364 (562)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.8E-21 4E-26 161.9 16.3 152 6-160 217-375 (509)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 3.2E-21 6.9E-26 159.1 16.7 150 11-160 312-480 (481)
15 KOG0131 Splicing factor 3b, su 99.9 1E-21 2.2E-26 136.6 9.7 135 1-164 40-181 (203)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.4E-20 3E-25 156.7 16.3 155 2-158 327-500 (509)
17 KOG0145 RNA-binding protein EL 99.9 3.7E-20 7.9E-25 135.6 15.0 160 1-160 158-358 (360)
18 TIGR01648 hnRNP-R-Q heterogene 99.8 1.5E-20 3.3E-25 155.5 13.4 144 1-187 89-243 (578)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 1.7E-19 3.6E-24 148.9 16.3 133 11-161 37-175 (481)
20 KOG0127 Nucleolar protein fibr 99.8 1.8E-19 3.9E-24 143.7 12.7 157 2-162 37-198 (678)
21 TIGR01622 SF-CC1 splicing fact 99.8 1.1E-18 2.4E-23 143.6 17.3 157 2-158 218-446 (457)
22 KOG0123 Polyadenylate-binding 99.8 6.6E-19 1.4E-23 139.6 12.2 124 1-163 29-156 (369)
23 KOG0124 Polypyrimidine tract-b 99.8 5.3E-19 1.1E-23 135.2 9.4 142 3-163 146-293 (544)
24 KOG0110 RNA-binding protein (R 99.8 9.4E-19 2E-23 143.3 10.4 130 10-160 558-693 (725)
25 KOG0127 Nucleolar protein fibr 99.8 1.5E-17 3.1E-22 132.9 14.8 154 7-160 153-378 (678)
26 PLN03134 glycine-rich RNA-bind 99.7 7.5E-16 1.6E-20 107.3 13.4 80 83-162 31-116 (144)
27 KOG0147 Transcriptional coacti 99.7 7.3E-17 1.6E-21 129.1 7.8 141 1-158 210-356 (549)
28 KOG0109 RNA-binding protein LA 99.7 1.5E-16 3.3E-21 118.3 8.5 115 12-160 36-150 (346)
29 KOG0123 Polyadenylate-binding 99.7 3.6E-16 7.8E-21 124.1 10.0 134 1-159 107-245 (369)
30 KOG4206 Spliceosomal protein s 99.7 5.3E-15 1.1E-19 106.8 13.1 152 7-158 47-220 (221)
31 KOG0125 Ataxin 2-binding prote 99.6 6.1E-15 1.3E-19 111.5 10.0 84 80-163 90-177 (376)
32 PF00076 RRM_1: RNA recognitio 99.6 5.1E-15 1.1E-19 90.5 7.9 65 89-153 1-70 (70)
33 KOG4205 RNA-binding protein mu 99.6 2.6E-15 5.7E-20 115.7 7.1 138 1-164 37-180 (311)
34 KOG0147 Transcriptional coacti 99.6 1.2E-14 2.7E-19 116.5 10.9 158 2-159 310-527 (549)
35 TIGR01659 sex-lethal sex-letha 99.6 1.4E-14 3.1E-19 114.4 10.7 80 81-160 102-187 (346)
36 KOG0121 Nuclear cap-binding pr 99.5 1.5E-14 3.1E-19 95.5 6.5 76 82-157 32-113 (153)
37 PLN03120 nucleic acid binding 99.5 8.9E-14 1.9E-18 103.9 10.5 73 86-159 4-79 (260)
38 KOG0146 RNA-binding protein ET 99.5 8.4E-14 1.8E-18 102.9 10.0 83 82-164 281-369 (371)
39 KOG0107 Alternative splicing f 99.5 4.9E-14 1.1E-18 97.9 7.6 78 85-162 9-87 (195)
40 KOG0114 Predicted RNA-binding 99.5 2.1E-13 4.6E-18 86.8 9.8 80 83-162 15-97 (124)
41 PF14259 RRM_6: RNA recognitio 99.5 1.6E-13 3.4E-18 84.1 8.6 65 89-153 1-70 (70)
42 TIGR01645 half-pint poly-U bin 99.5 1.8E-13 3.9E-18 114.1 10.4 75 84-158 105-185 (612)
43 KOG0122 Translation initiation 99.5 3.2E-13 6.9E-18 98.5 8.8 77 84-160 187-269 (270)
44 PF13893 RRM_5: RNA recognitio 99.5 9.2E-13 2E-17 77.1 8.8 55 103-157 1-56 (56)
45 smart00362 RRM_2 RNA recogniti 99.4 1.3E-12 2.8E-17 79.5 9.2 68 88-155 1-72 (72)
46 KOG1457 RNA binding protein (c 99.4 1.1E-12 2.3E-17 94.7 9.7 138 11-148 76-274 (284)
47 KOG0120 Splicing factor U2AF, 99.4 8.7E-13 1.9E-17 106.8 10.1 152 1-158 320-490 (500)
48 KOG0105 Alternative splicing f 99.4 4.5E-13 9.8E-18 94.0 6.9 77 84-160 4-83 (241)
49 PLN03213 repressor of silencin 99.4 1E-12 2.2E-17 104.6 9.7 78 83-160 7-88 (759)
50 KOG1190 Polypyrimidine tract-b 99.4 7.2E-12 1.5E-16 97.6 13.6 154 11-164 186-377 (492)
51 KOG0110 RNA-binding protein (R 99.4 2E-12 4.4E-17 106.6 10.7 172 15-188 424-624 (725)
52 PLN03121 nucleic acid binding 99.4 3.4E-12 7.4E-17 94.1 10.1 73 85-158 4-79 (243)
53 KOG1548 Transcription elongati 99.4 1.2E-11 2.6E-16 94.5 12.9 158 1-160 173-352 (382)
54 KOG0113 U1 small nuclear ribon 99.4 4.4E-12 9.6E-17 95.1 9.5 85 83-167 98-188 (335)
55 KOG1190 Polypyrimidine tract-b 99.4 1.2E-11 2.5E-16 96.5 11.9 150 11-160 334-491 (492)
56 KOG4211 Splicing factor hnRNP- 99.4 9E-12 1.9E-16 99.1 11.4 135 3-158 40-180 (510)
57 cd00590 RRM RRM (RNA recogniti 99.3 1.7E-11 3.7E-16 74.9 9.5 69 88-156 1-74 (74)
58 KOG0105 Alternative splicing f 99.3 2.7E-11 5.9E-16 85.1 11.4 133 11-148 44-176 (241)
59 KOG4207 Predicted splicing fac 99.3 4.6E-12 1E-16 90.4 6.4 79 80-158 7-91 (256)
60 KOG0111 Cyclophilin-type pepti 99.3 2.8E-12 6E-17 92.4 4.7 82 83-164 7-94 (298)
61 KOG0106 Alternative splicing f 99.3 6.7E-12 1.5E-16 91.5 6.0 135 10-157 33-168 (216)
62 KOG0130 RNA-binding protein RB 99.3 8.8E-12 1.9E-16 83.2 6.0 79 80-158 66-150 (170)
63 KOG0126 Predicted RNA-binding 99.3 6.5E-13 1.4E-17 92.9 0.5 74 84-157 33-112 (219)
64 smart00360 RRM RNA recognition 99.3 3.2E-11 7E-16 72.9 7.7 65 91-155 1-71 (71)
65 KOG0109 RNA-binding protein LA 99.3 1.4E-11 3.1E-16 92.1 7.0 72 87-160 3-74 (346)
66 KOG0131 Splicing factor 3b, su 99.3 2.7E-11 5.9E-16 84.9 7.8 76 83-158 6-87 (203)
67 KOG0132 RNA polymerase II C-te 99.3 1.7E-11 3.7E-16 102.1 8.0 99 83-184 418-516 (894)
68 KOG4206 Spliceosomal protein s 99.3 2.7E-11 5.8E-16 87.8 8.1 79 84-162 7-92 (221)
69 KOG0149 Predicted RNA-binding 99.3 1.5E-11 3.2E-16 89.5 6.6 73 85-158 11-89 (247)
70 KOG0144 RNA-binding protein CU 99.3 2.6E-11 5.6E-16 95.1 8.0 84 80-163 28-120 (510)
71 KOG0124 Polypyrimidine tract-b 99.2 3.3E-11 7.2E-16 92.9 7.9 75 83-157 443-532 (544)
72 KOG4212 RNA-binding protein hn 99.2 3.3E-10 7.1E-15 89.3 13.1 158 2-160 77-294 (608)
73 KOG0108 mRNA cleavage and poly 99.2 6.5E-11 1.4E-15 95.3 8.0 76 87-162 19-100 (435)
74 COG0724 RNA-binding proteins ( 99.2 1.5E-10 3.2E-15 88.4 9.6 73 86-158 115-193 (306)
75 KOG0117 Heterogeneous nuclear 99.2 4.9E-10 1.1E-14 88.4 11.8 75 84-158 81-162 (506)
76 KOG0148 Apoptosis-promoting RN 99.2 1.1E-10 2.3E-15 86.7 7.4 102 85-186 61-173 (321)
77 KOG0153 Predicted RNA-binding 99.2 2.6E-10 5.6E-15 87.3 9.2 80 80-159 222-302 (377)
78 PLN03134 glycine-rich RNA-bind 99.1 1.6E-10 3.4E-15 80.6 6.0 51 1-51 65-115 (144)
79 smart00361 RRM_1 RNA recogniti 99.1 1.5E-10 3.2E-15 70.8 5.2 43 2-44 25-69 (70)
80 KOG0120 Splicing factor U2AF, 99.1 3E-10 6.6E-15 92.2 6.6 147 8-162 219-371 (500)
81 smart00361 RRM_1 RNA recogniti 99.0 1.3E-09 2.7E-14 66.7 7.4 55 100-154 2-69 (70)
82 KOG1365 RNA-binding protein Fu 99.0 1.8E-10 3.8E-15 89.4 3.7 152 6-158 200-360 (508)
83 KOG0415 Predicted peptidyl pro 99.0 9.1E-10 2E-14 84.7 6.8 83 82-164 235-323 (479)
84 KOG1456 Heterogeneous nuclear 99.0 1.7E-08 3.6E-13 78.4 13.6 148 13-160 160-363 (494)
85 KOG0146 RNA-binding protein ET 99.0 1.1E-09 2.4E-14 81.3 6.0 81 84-164 17-105 (371)
86 KOG4207 Predicted splicing fac 98.9 6.4E-10 1.4E-14 79.6 3.6 49 2-50 45-93 (256)
87 KOG1456 Heterogeneous nuclear 98.9 5.7E-08 1.2E-12 75.5 12.8 154 5-158 318-489 (494)
88 KOG1457 RNA binding protein (c 98.9 4.5E-08 9.8E-13 71.1 10.6 82 81-162 29-120 (284)
89 COG0724 RNA-binding proteins ( 98.8 4.5E-08 9.7E-13 74.6 10.8 113 2-121 147-260 (306)
90 KOG4660 Protein Mei2, essentia 98.8 6.8E-09 1.5E-13 84.1 4.6 74 80-153 69-143 (549)
91 PF13893 RRM_5: RNA recognitio 98.8 1.7E-08 3.8E-13 58.7 5.2 36 12-47 21-56 (56)
92 KOG0108 mRNA cleavage and poly 98.7 5.7E-09 1.2E-13 84.3 3.2 53 1-53 49-101 (435)
93 KOG4212 RNA-binding protein hn 98.7 4.5E-08 9.8E-13 77.4 8.0 75 83-157 533-608 (608)
94 KOG0226 RNA-binding proteins [ 98.7 2.3E-08 5E-13 73.9 5.7 132 2-158 131-268 (290)
95 KOG4208 Nucleolar RNA-binding 98.7 6.4E-08 1.4E-12 69.5 7.7 79 82-160 45-130 (214)
96 KOG1548 Transcription elongati 98.7 5.9E-08 1.3E-12 74.6 7.7 80 83-162 131-223 (382)
97 KOG4208 Nucleolar RNA-binding 98.7 1.8E-08 3.9E-13 72.2 4.2 49 2-50 82-130 (214)
98 KOG0151 Predicted splicing reg 98.7 1.8E-07 4E-12 78.0 10.2 81 80-160 168-257 (877)
99 PF00076 RRM_1: RNA recognitio 98.7 3.6E-08 7.8E-13 59.7 4.7 40 3-43 31-70 (70)
100 KOG0111 Cyclophilin-type pepti 98.7 2.2E-08 4.7E-13 72.6 3.5 52 2-53 42-93 (298)
101 KOG0533 RRM motif-containing p 98.6 2.6E-07 5.6E-12 69.1 8.4 81 82-162 79-164 (243)
102 KOG0126 Predicted RNA-binding 98.6 2.1E-08 4.5E-13 70.6 2.2 49 2-50 67-115 (219)
103 KOG0106 Alternative splicing f 98.6 7E-08 1.5E-12 70.7 4.5 74 87-162 2-75 (216)
104 PF14259 RRM_6: RNA recognitio 98.6 1.2E-07 2.7E-12 57.6 4.9 41 2-43 30-70 (70)
105 smart00360 RRM RNA recognition 98.6 1.3E-07 2.7E-12 56.8 4.8 44 2-45 28-71 (71)
106 KOG4661 Hsp27-ERE-TATA-binding 98.6 1.7E-07 3.7E-12 76.6 6.7 80 83-162 402-487 (940)
107 KOG0113 U1 small nuclear ribon 98.5 1.5E-07 3.3E-12 71.1 4.7 50 1-50 132-181 (335)
108 KOG0226 RNA-binding proteins [ 98.5 8.6E-08 1.9E-12 70.9 2.8 48 1-48 221-268 (290)
109 KOG4205 RNA-binding protein mu 98.5 3.3E-07 7.2E-12 71.1 5.6 82 85-167 5-92 (311)
110 KOG0149 Predicted RNA-binding 98.4 1.7E-07 3.8E-12 68.6 3.0 47 2-49 44-90 (247)
111 KOG0130 RNA-binding protein RB 98.4 2.3E-07 4.9E-12 62.4 3.2 48 3-50 105-152 (170)
112 KOG0107 Alternative splicing f 98.4 2.7E-07 5.8E-12 64.7 3.3 41 10-50 45-85 (195)
113 KOG0125 Ataxin 2-binding prote 98.4 4.2E-07 9.2E-12 69.6 3.8 42 9-50 133-174 (376)
114 smart00362 RRM_2 RNA recogniti 98.3 1E-06 2.3E-11 52.9 4.7 37 9-45 36-72 (72)
115 KOG0116 RasGAP SH3 binding pro 98.3 1.3E-06 2.8E-11 70.5 6.1 74 87-161 289-368 (419)
116 KOG0121 Nuclear cap-binding pr 98.3 9.4E-07 2E-11 58.9 4.2 44 4-47 70-113 (153)
117 KOG4210 Nuclear localization s 98.3 1.8E-06 3.9E-11 66.7 6.3 135 6-162 124-266 (285)
118 KOG4209 Splicing factor RNPS1, 98.3 4.7E-06 1E-10 62.4 7.5 79 81-160 96-180 (231)
119 PF11608 Limkain-b1: Limkain b 98.2 7.6E-06 1.6E-10 50.6 6.8 68 87-158 3-75 (90)
120 KOG4454 RNA binding protein (R 98.2 7.7E-07 1.7E-11 64.6 2.2 76 83-158 6-85 (267)
121 PF08777 RRM_3: RNA binding mo 98.2 8.7E-06 1.9E-10 53.5 6.5 59 87-145 2-60 (105)
122 KOG1365 RNA-binding protein Fu 98.2 4E-05 8.7E-10 60.2 10.8 134 8-157 98-240 (508)
123 KOG0112 Large RNA-binding prot 98.1 3.4E-06 7.3E-11 72.3 5.2 124 8-163 409-534 (975)
124 KOG4211 Splicing factor hnRNP- 98.1 1.4E-05 3.1E-10 64.4 8.4 77 83-161 7-87 (510)
125 PLN03213 repressor of silencin 98.1 3.8E-06 8.3E-11 67.8 4.6 43 6-50 44-88 (759)
126 KOG4307 RNA binding protein RB 98.1 1.2E-05 2.5E-10 67.5 7.1 147 10-157 350-511 (944)
127 PF04059 RRM_2: RNA recognitio 98.1 3.9E-05 8.5E-10 49.5 7.9 76 87-162 2-89 (97)
128 KOG0114 Predicted RNA-binding 98.1 5.4E-06 1.2E-10 53.3 3.8 49 3-51 48-96 (124)
129 cd00590 RRM RRM (RNA recogniti 98.1 1.2E-05 2.6E-10 48.4 5.2 37 10-46 38-74 (74)
130 PLN03120 nucleic acid binding 98.0 1E-05 2.2E-10 61.0 5.1 40 10-50 41-80 (260)
131 KOG0129 Predicted RNA-binding 98.0 0.0002 4.3E-09 58.3 12.3 118 13-141 307-432 (520)
132 KOG0415 Predicted peptidyl pro 97.9 7.7E-06 1.7E-10 63.5 3.4 48 2-49 271-318 (479)
133 KOG2193 IGF-II mRNA-binding pr 97.9 5.3E-07 1.1E-11 71.3 -3.3 120 11-162 36-159 (584)
134 COG5175 MOT2 Transcriptional r 97.9 6.7E-05 1.4E-09 58.1 7.8 79 80-158 108-201 (480)
135 KOG0128 RNA-binding protein SA 97.9 8.6E-06 1.9E-10 69.5 3.0 106 7-159 704-814 (881)
136 PLN03121 nucleic acid binding 97.8 3.8E-05 8.2E-10 57.2 4.8 43 2-48 37-79 (243)
137 PF14605 Nup35_RRM_2: Nup53/35 97.8 9.1E-05 2E-09 42.4 5.1 52 87-139 2-53 (53)
138 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00018 4E-09 46.7 6.5 71 86-158 6-90 (100)
139 KOG1855 Predicted RNA-binding 97.6 0.00013 2.9E-09 58.0 5.5 76 80-155 225-319 (484)
140 KOG1995 Conserved Zn-finger pr 97.6 0.0001 2.3E-09 57.4 4.4 81 82-162 62-156 (351)
141 KOG1996 mRNA splicing factor [ 97.5 0.00026 5.6E-09 53.9 6.1 59 100-158 300-365 (378)
142 KOG0115 RNA-binding protein p5 97.5 0.0004 8.7E-09 51.9 7.0 99 23-158 5-112 (275)
143 KOG4307 RNA binding protein RB 97.5 0.0005 1.1E-08 58.1 7.2 72 85-156 866-943 (944)
144 KOG3152 TBP-binding protein, a 97.4 9.7E-05 2.1E-09 55.1 2.2 67 85-151 73-157 (278)
145 PF04059 RRM_2: RNA recognitio 97.3 0.00047 1E-08 44.5 4.7 46 3-48 36-85 (97)
146 KOG4661 Hsp27-ERE-TATA-binding 97.3 0.0003 6.5E-09 58.2 4.3 50 1-50 436-485 (940)
147 PF08952 DUF1866: Domain of un 97.2 0.0026 5.5E-08 44.0 7.4 57 101-160 51-107 (146)
148 KOG4209 Splicing factor RNPS1, 97.2 0.00049 1.1E-08 51.7 4.0 48 2-50 133-180 (231)
149 KOG2314 Translation initiation 97.1 0.0021 4.5E-08 53.3 7.4 74 84-157 56-141 (698)
150 PF11608 Limkain-b1: Limkain b 97.1 0.0011 2.4E-08 41.2 4.1 40 11-50 38-77 (90)
151 PF04847 Calcipressin: Calcipr 97.0 0.0036 7.7E-08 45.4 6.8 62 99-160 8-71 (184)
152 KOG2202 U2 snRNP splicing fact 97.0 0.00037 8.1E-09 52.0 1.8 58 101-158 83-146 (260)
153 KOG4454 RNA binding protein (R 96.9 0.00033 7.2E-09 51.2 1.2 99 8-146 46-149 (267)
154 KOG4660 Protein Mei2, essentia 96.7 0.0019 4.1E-08 53.3 3.7 143 6-159 106-249 (549)
155 KOG4676 Splicing factor, argin 96.7 0.0028 6E-08 50.3 4.5 69 88-157 9-86 (479)
156 KOG2416 Acinus (induces apopto 96.7 0.0023 5E-08 53.3 4.2 79 80-159 438-521 (718)
157 KOG2193 IGF-II mRNA-binding pr 96.6 0.0018 3.9E-08 51.8 2.8 76 87-162 2-78 (584)
158 PF10309 DUF2414: Protein of u 96.5 0.022 4.8E-07 33.5 6.5 55 86-142 5-62 (62)
159 PF08675 RNA_bind: RNA binding 96.5 0.026 5.6E-07 35.1 7.1 55 86-143 9-63 (87)
160 KOG0129 Predicted RNA-binding 96.4 0.018 3.9E-07 47.3 7.5 59 83-142 256-326 (520)
161 KOG4849 mRNA cleavage factor I 96.3 0.006 1.3E-07 47.8 4.0 69 83-151 77-153 (498)
162 KOG0132 RNA polymerase II C-te 96.0 0.009 1.9E-07 51.4 4.1 44 9-52 454-497 (894)
163 PF15023 DUF4523: Protein of u 95.9 0.063 1.4E-06 36.9 7.2 75 82-158 82-160 (166)
164 KOG0153 Predicted RNA-binding 95.9 0.011 2.3E-07 46.3 3.9 39 11-49 263-302 (377)
165 KOG2135 Proteins containing th 95.9 0.013 2.8E-07 47.7 4.4 80 83-163 369-449 (526)
166 KOG0533 RRM motif-containing p 95.8 0.017 3.6E-07 43.7 4.6 46 5-51 118-163 (243)
167 KOG0128 RNA-binding protein SA 95.7 0.00029 6.2E-09 60.6 -5.9 114 14-148 616-735 (881)
168 KOG2202 U2 snRNP splicing fact 95.5 0.0091 2E-07 44.8 2.1 46 3-48 101-146 (260)
169 KOG1995 Conserved Zn-finger pr 95.4 0.011 2.4E-07 46.4 2.2 51 1-51 105-155 (351)
170 KOG0112 Large RNA-binding prot 95.3 0.0045 9.7E-08 53.9 -0.1 75 83-157 369-448 (975)
171 PF07576 BRAP2: BRCA1-associat 95.1 0.42 9.2E-06 31.6 8.9 72 86-157 13-92 (110)
172 KOG4574 RNA-binding protein (c 95.1 0.021 4.5E-07 49.7 3.1 75 90-164 302-378 (1007)
173 KOG2068 MOT2 transcription fac 95.0 0.0087 1.9E-07 46.6 0.7 77 83-159 74-162 (327)
174 KOG2314 Translation initiation 94.9 0.054 1.2E-06 45.2 4.9 41 4-45 98-139 (698)
175 COG5175 MOT2 Transcriptional r 94.8 0.039 8.4E-07 43.2 3.7 33 16-48 169-201 (480)
176 PF11767 SET_assoc: Histone ly 94.7 0.064 1.4E-06 32.0 3.7 33 11-44 33-65 (66)
177 KOG2591 c-Mpl binding protein, 94.6 0.18 3.8E-06 42.2 7.3 66 86-152 175-244 (684)
178 KOG4676 Splicing factor, argin 94.6 0.023 5.1E-07 45.2 2.2 139 10-150 50-216 (479)
179 KOG4285 Mitotic phosphoprotein 94.5 0.33 7.1E-06 37.6 8.0 71 87-159 198-269 (350)
180 PF07292 NID: Nmi/IFP 35 domai 94.2 0.08 1.7E-06 33.5 3.5 70 15-107 1-73 (88)
181 PF03467 Smg4_UPF3: Smg-4/UPF3 93.5 0.14 3.1E-06 36.9 4.3 74 85-158 6-96 (176)
182 KOG4019 Calcineurin-mediated s 93.3 0.19 4.2E-06 35.9 4.6 73 88-160 12-90 (193)
183 PF08952 DUF1866: Domain of un 92.8 0.22 4.8E-06 34.5 4.2 35 14-49 72-106 (146)
184 KOG0804 Cytoplasmic Zn-finger 92.0 0.65 1.4E-05 38.0 6.5 72 86-157 74-153 (493)
185 KOG1996 mRNA splicing factor [ 91.1 0.27 5.9E-06 37.9 3.3 35 14-48 331-365 (378)
186 KOG4410 5-formyltetrahydrofola 90.8 1 2.2E-05 34.7 6.2 50 83-132 327-377 (396)
187 KOG0151 Predicted splicing reg 90.6 0.25 5.5E-06 42.5 3.0 39 10-48 217-255 (877)
188 KOG4210 Nuclear localization s 90.6 0.12 2.7E-06 40.2 1.2 50 1-51 216-265 (285)
189 KOG2318 Uncharacterized conser 90.1 2.7 5.8E-05 35.7 8.4 75 83-157 171-305 (650)
190 KOG4849 mRNA cleavage factor I 89.2 0.57 1.2E-05 37.1 3.8 43 3-45 115-157 (498)
191 PF07576 BRAP2: BRCA1-associat 89.0 0.72 1.6E-05 30.5 3.7 36 1-38 45-80 (110)
192 PF03880 DbpA: DbpA RNA bindin 88.7 0.72 1.6E-05 28.0 3.3 34 13-47 41-74 (74)
193 KOG0116 RasGAP SH3 binding pro 88.0 0.54 1.2E-05 38.6 3.1 40 9-49 327-366 (419)
194 KOG2416 Acinus (induces apopto 87.2 0.82 1.8E-05 38.8 3.7 36 12-47 481-519 (718)
195 PF11767 SET_assoc: Histone ly 86.3 5.2 0.00011 23.8 6.5 55 97-154 11-65 (66)
196 PF03880 DbpA: DbpA RNA bindin 84.7 1.7 3.6E-05 26.4 3.4 58 97-157 12-74 (74)
197 PF05172 Nup35_RRM: Nup53/35/4 83.7 2.1 4.5E-05 27.8 3.6 35 12-47 54-89 (100)
198 PF04847 Calcipressin: Calcipr 81.0 2.6 5.6E-05 30.7 3.7 39 11-49 30-70 (184)
199 KOG2253 U1 snRNP complex, subu 80.8 1.1 2.4E-05 38.4 1.9 72 83-157 37-108 (668)
200 PF08777 RRM_3: RNA binding mo 77.7 2.8 6E-05 27.5 2.8 33 14-46 39-76 (105)
201 KOG4483 Uncharacterized conser 77.6 8.7 0.00019 31.3 5.9 60 81-141 386-446 (528)
202 PF14111 DUF4283: Domain of un 75.3 0.97 2.1E-05 31.4 0.1 83 11-120 54-139 (153)
203 PF10567 Nab6_mRNP_bdg: RNA-re 74.5 5.8 0.00013 30.9 4.1 75 84-158 13-106 (309)
204 KOG2068 MOT2 transcription fac 71.3 1.4 2.9E-05 34.8 0.1 35 15-49 128-162 (327)
205 COG0445 GidA Flavin-dependent 64.7 22 0.00048 30.6 5.8 101 13-129 237-342 (621)
206 PF02714 DUF221: Domain of unk 62.7 12 0.00025 29.6 3.8 34 15-50 1-34 (325)
207 COG5638 Uncharacterized conser 61.5 62 0.0014 26.7 7.5 41 80-120 140-185 (622)
208 KOG0804 Cytoplasmic Zn-finger 57.6 29 0.00063 28.9 5.1 37 1-39 106-142 (493)
209 PF15513 DUF4651: Domain of un 55.4 29 0.00062 20.4 3.6 19 101-119 9-27 (62)
210 KOG2591 c-Mpl binding protein, 47.0 11 0.00023 32.2 1.3 28 16-43 216-245 (684)
211 PF02714 DUF221: Domain of unk 45.3 33 0.00071 27.0 3.8 41 125-167 1-41 (325)
212 KOG3152 TBP-binding protein, a 45.1 5 0.00011 30.6 -0.8 27 15-41 131-157 (278)
213 KOG4285 Mitotic phosphoprotein 41.7 43 0.00093 26.4 3.7 41 5-46 225-266 (350)
214 PF11823 DUF3343: Protein of u 40.9 40 0.00087 20.1 2.9 25 13-37 2-26 (73)
215 KOG2295 C2H2 Zn-finger protein 38.5 7.6 0.00016 33.0 -0.8 68 85-152 230-303 (648)
216 PHA01632 hypothetical protein 37.7 31 0.00067 19.7 1.8 21 89-109 19-39 (64)
217 KOG2135 Proteins containing th 37.5 19 0.0004 30.1 1.3 37 12-49 409-445 (526)
218 PRK01178 rps24e 30S ribosomal 36.0 42 0.00091 21.8 2.5 20 8-28 62-81 (99)
219 PF03468 XS: XS domain; Inter 34.8 83 0.0018 21.0 3.9 42 99-140 30-75 (116)
220 PRK14548 50S ribosomal protein 33.8 1.2E+02 0.0026 18.9 5.1 54 89-142 23-81 (84)
221 KOG4019 Calcineurin-mediated s 29.7 1E+02 0.0022 22.5 3.8 41 10-50 49-90 (193)
222 PF03439 Spt5-NGN: Early trans 29.3 68 0.0015 19.9 2.6 26 10-35 42-67 (84)
223 KOG4008 rRNA processing protei 29.2 47 0.001 25.2 2.1 34 83-116 37-70 (261)
224 PF11061 DUF2862: Protein of u 28.9 1.3E+02 0.0028 17.8 4.0 30 102-131 19-51 (64)
225 PF08206 OB_RNB: Ribonuclease 28.2 43 0.00092 19.1 1.5 12 10-21 6-17 (58)
226 PTZ00071 40S ribosomal protein 27.8 66 0.0014 22.1 2.5 19 8-27 68-86 (132)
227 PRK14998 cold shock-like prote 27.6 35 0.00076 20.7 1.1 12 10-21 11-22 (73)
228 PF06613 KorB_C: KorB C-termin 27.5 43 0.00094 19.4 1.3 21 1-22 21-41 (60)
229 PF12829 Mhr1: Transcriptional 27.5 95 0.0021 19.8 3.0 23 11-33 50-72 (91)
230 PRK15464 cold shock-like prote 27.1 33 0.00072 20.6 0.9 12 10-21 14-25 (70)
231 KOG3424 40S ribosomal protein 27.0 59 0.0013 21.8 2.1 19 8-27 66-84 (132)
232 PRK09937 stationary phase/star 27.0 38 0.00082 20.6 1.1 11 10-20 11-21 (74)
233 PF11411 DNA_ligase_IV: DNA li 26.2 48 0.001 17.1 1.2 16 96-111 19-34 (36)
234 PF09341 Pcc1: Transcription f 26.2 1.2E+02 0.0026 18.2 3.3 23 12-34 2-24 (76)
235 PRK09507 cspE cold shock prote 25.5 38 0.00082 20.2 0.9 12 10-21 13-24 (69)
236 PRK15463 cold shock-like prote 25.2 39 0.00085 20.2 1.0 12 10-21 14-25 (70)
237 KOG2891 Surface glycoprotein [ 24.9 71 0.0015 24.9 2.5 23 97-119 172-194 (445)
238 PRK10943 cold shock-like prote 24.7 39 0.00084 20.1 0.9 12 10-21 13-24 (69)
239 KOG4574 RNA-binding protein (c 24.6 47 0.001 30.0 1.7 39 12-50 334-374 (1007)
240 PF09180 ProRS-C_1: Prolyl-tRN 24.4 96 0.0021 18.4 2.5 33 11-43 10-42 (68)
241 TIGR02381 cspD cold shock doma 24.0 47 0.001 19.7 1.1 12 10-21 11-22 (68)
242 PF15063 TC1: Thyroid cancer p 23.6 45 0.00098 20.4 1.0 28 86-113 25-52 (79)
243 COG5594 Uncharacterized integr 23.0 1E+02 0.0022 27.9 3.3 36 11-46 356-392 (827)
244 PRK09890 cold shock protein Cs 21.9 47 0.001 19.8 0.9 11 10-20 14-24 (70)
245 PF01282 Ribosomal_S24e: Ribos 21.3 1.1E+02 0.0024 19.0 2.5 19 8-27 44-62 (84)
246 PRK10354 RNA chaperone/anti-te 21.3 49 0.0011 19.7 0.9 10 10-19 14-23 (70)
247 KOG2318 Uncharacterized conser 21.2 1.1E+02 0.0023 26.6 3.0 33 14-46 270-304 (650)
No 1
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.8e-28 Score=179.56 Aligned_cols=148 Identities=31% Similarity=0.518 Sum_probs=126.9
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGS 80 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (192)
|||||..|++|+|||||.|...++||.||..|||.=+.+|.|+-.|+..+..........- ...-.
T Consensus 93 kvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltf--------------deV~N 158 (321)
T KOG0148|consen 93 KVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTF--------------DEVYN 158 (321)
T ss_pred eEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccH--------------HHHhc
Confidence 7999999999999999999999999999999999999999999999976642111000000 00013
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 160 (192)
.....++++||+|++..++|++|++.|++||.|.+|++.+.+|++||.|++.++|..|+..+|+.++.|+.++++|.+..
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred CC
Q 037126 161 GN 162 (192)
Q Consensus 161 ~~ 162 (192)
..
T Consensus 239 ~~ 240 (321)
T KOG0148|consen 239 DD 240 (321)
T ss_pred CC
Confidence 43
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=1.3e-26 Score=182.32 Aligned_cols=132 Identities=25% Similarity=0.511 Sum_probs=116.3
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGS 80 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (192)
||++|+.+++++|||||+|.++++|++|++.|++..+.+++|+|.++.+...
T Consensus 138 ~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~---------------------------- 189 (346)
T TIGR01659 138 RIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGE---------------------------- 189 (346)
T ss_pred EEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccccccc----------------------------
Confidence 4788999999999999999999999999999999999999999998754211
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCC--eEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGK--QTV 152 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g--~~l 152 (192)
......|||+|||..+++++|+++|++||.|..+.++++ +++|||+|.+.++|.+|++.|++..+.+ ++|
T Consensus 190 --~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l 267 (346)
T TIGR01659 190 --SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPL 267 (346)
T ss_pred --ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeE
Confidence 122457999999999999999999999999999998864 4899999999999999999999998865 689
Q ss_pred EEEecCCCCC
Q 037126 153 RLSSGHNPGN 162 (192)
Q Consensus 153 ~v~~a~~~~~ 162 (192)
+|.+++....
T Consensus 268 ~V~~a~~~~~ 277 (346)
T TIGR01659 268 TVRLAEEHGK 277 (346)
T ss_pred EEEECCcccc
Confidence 9999975544
No 3
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=3.1e-26 Score=177.99 Aligned_cols=164 Identities=20% Similarity=0.339 Sum_probs=125.0
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCcee-CCceeEEeecCCCCcc-------chh----------------
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYC-SSRPMSIDVATPKKAS-------GYQ---------------- 56 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~-~g~~i~v~~~~~~~~~-------~~~---------------- 56 (192)
|||+|+.+|.+||||||+|.+.++|++|++.||+.+| .|+.|.|+.+..+... ...
T Consensus 114 RLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVv 193 (506)
T KOG0117|consen 114 RLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVV 193 (506)
T ss_pred EEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCee
Confidence 6899999999999999999999999999999999987 8999999876433220 000
Q ss_pred ---------------------------hhcchh------hhhccC-CCCCCCC--CCCCCCCCCCCceEEEcCCCCCCCH
Q 037126 57 ---------------------------QQCSSQ------ALVLAG-GPASNGT--RVQGSDGESNNATIFVGALDSDVSD 100 (192)
Q Consensus 57 ---------------------------~~~~~~------~~~~~~-~~~~~~~--~~~~~~~~~~~~~l~v~~lp~~~~~ 100 (192)
...... ...|.+ -..++.. .............|||.||+.++|+
T Consensus 194 dVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTe 273 (506)
T KOG0117|consen 194 DVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTE 273 (506)
T ss_pred EEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhH
Confidence 000000 000100 0111111 1111223445689999999999999
Q ss_pred HHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCCCCCC
Q 037126 101 KDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWR 166 (192)
Q Consensus 101 ~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~~~ 166 (192)
+.|.++|+.||.|.+|+.++ .+|||.|.+.++|.+|++.+||.+++|..|+|.+|+++..++..
T Consensus 274 E~lk~~F~~~G~veRVkk~r--DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 274 ETLKKLFNEFGKVERVKKPR--DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred HHHHHHHHhccceEEeeccc--ceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccc
Confidence 99999999999999998875 59999999999999999999999999999999999988776544
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.94 E-value=2.9e-25 Score=183.60 Aligned_cols=145 Identities=21% Similarity=0.385 Sum_probs=119.8
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGS 80 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (192)
+|++|+.||+++|||||+|.+.++|+.|++.|||..+.|+.|+|.+......... ......
T Consensus 138 ~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~-------------------~~~~~~ 198 (612)
T TIGR01645 138 NMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQP-------------------IIDMVQ 198 (612)
T ss_pred EEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccccccccc-------------------cccccc
Confidence 3678999999999999999999999999999999999999999986432211000 000001
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
......++|||+|||..+++++|+++|+.||.|.++++.+ .+|+|||+|.+.++|.+|+..||+..++|+.|+|
T Consensus 199 ~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV 278 (612)
T TIGR01645 199 EEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRV 278 (612)
T ss_pred ccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 1223457899999999999999999999999999999886 3699999999999999999999999999999999
Q ss_pred EecCCCCCCC
Q 037126 155 SSGHNPGNKQ 164 (192)
Q Consensus 155 ~~a~~~~~~~ 164 (192)
.++..+....
T Consensus 279 ~kAi~pP~~~ 288 (612)
T TIGR01645 279 GKCVTPPDAL 288 (612)
T ss_pred EecCCCcccc
Confidence 9998654443
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.93 E-value=2.9e-24 Score=171.01 Aligned_cols=160 Identities=31% Similarity=0.459 Sum_probs=116.2
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCC--ceeEEeecCCCCccchhhhcc-----------hhhhh---
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSS--RPMSIDVATPKKASGYQQQCS-----------SQALV--- 65 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g--~~i~v~~~~~~~~~~~~~~~~-----------~~~~~--- 65 (192)
+++|..+|.++|||||+|.+.++|+.|++.|||..+.| .+|.|.++..+.......... .....
T Consensus 121 ~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (352)
T TIGR01661 121 ILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTIL 200 (352)
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccc
Confidence 56777789999999999999999999999999999877 578888775443111000000 00000
Q ss_pred --------------ccC------------------------CCCCC----C-C-----CCCCCCCCCCCceEEEcCCCCC
Q 037126 66 --------------LAG------------------------GPASN----G-T-----RVQGSDGESNNATIFVGALDSD 97 (192)
Q Consensus 66 --------------~~~------------------------~~~~~----~-~-----~~~~~~~~~~~~~l~v~~lp~~ 97 (192)
... ..... . . .............|||+|||..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~ 280 (352)
T TIGR01661 201 TAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPD 280 (352)
T ss_pred cccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCC
Confidence 000 00000 0 0 0000111233457999999999
Q ss_pred CCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 037126 98 VSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPG 161 (192)
Q Consensus 98 ~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 161 (192)
+++++|.++|++||.|.+++++. .+|+|||+|.+.++|.+|+..|||..++|+.|+|.|+.+..
T Consensus 281 ~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 281 TDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred CCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 99999999999999999999885 37999999999999999999999999999999999997553
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.92 E-value=8e-24 Score=168.46 Aligned_cols=131 Identities=27% Similarity=0.575 Sum_probs=115.9
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGS 80 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (192)
||++|+.+|+++|||||+|.++++|++|++.|+|..+.|++|.|.++.+...
T Consensus 34 ~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~---------------------------- 85 (352)
T TIGR01661 34 KLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSD---------------------------- 85 (352)
T ss_pred EEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeeccccc----------------------------
Confidence 5788999999999999999999999999999999999999999999754321
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCC--eEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGK--QTV 152 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g--~~l 152 (192)
....+.|||+|||..+++++|+++|++||.|..+.+.. .+|+|||+|.+.++|..|+..|+|..+.| .+|
T Consensus 86 --~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i 163 (352)
T TIGR01661 86 --SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPI 163 (352)
T ss_pred --ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeE
Confidence 12345799999999999999999999999999988764 36899999999999999999999999876 579
Q ss_pred EEEecCCCC
Q 037126 153 RLSSGHNPG 161 (192)
Q Consensus 153 ~v~~a~~~~ 161 (192)
.+.|+..+.
T Consensus 164 ~v~~a~~~~ 172 (352)
T TIGR01661 164 TVKFANNPS 172 (352)
T ss_pred EEEECCCCC
Confidence 999987554
No 7
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=8.5e-25 Score=159.80 Aligned_cols=133 Identities=29% Similarity=0.571 Sum_probs=118.0
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGS 80 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (192)
|++||+.+|+|.|||||-|.+++||++|+..|||..+..+.|+|.|+.+...
T Consensus 72 KLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~---------------------------- 123 (360)
T KOG0145|consen 72 KLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSD---------------------------- 123 (360)
T ss_pred eeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChh----------------------------
Confidence 7899999999999999999999999999999999999999999999875432
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCe--EE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQ--TV 152 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~--~l 152 (192)
......|||.+||+..+..+|+++|++||.|..-++.. +||++||.|....+|+.|++.|||..-.|. +|
T Consensus 124 --~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepI 201 (360)
T KOG0145|consen 124 --SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPI 201 (360)
T ss_pred --hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCe
Confidence 24556799999999999999999999999986665543 589999999999999999999999988766 79
Q ss_pred EEEecCCCCCC
Q 037126 153 RLSSGHNPGNK 163 (192)
Q Consensus 153 ~v~~a~~~~~~ 163 (192)
.|.|+..+..+
T Consensus 202 tVKFannPsq~ 212 (360)
T KOG0145|consen 202 TVKFANNPSQK 212 (360)
T ss_pred EEEecCCcccc
Confidence 99999766443
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=2.2e-23 Score=171.29 Aligned_cols=139 Identities=25% Similarity=0.501 Sum_probs=115.7
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGS 80 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (192)
+|++|+.+|.++|||||+|.+.++|++|| .|+|..+.|++|.|.++........... ... .
T Consensus 120 ~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~--------------~~~----~ 180 (457)
T TIGR01622 120 QCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQSSQAEKNRAAKAA--------------THQ----P 180 (457)
T ss_pred EEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEeecchhhhhhhhcc--------------ccc----C
Confidence 46788889999999999999999999999 6999999999999987654322111000 000 0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
.......+|||+|||..+++++|.++|++||.|..|.+.. .+|+|||+|.+.++|.+|+..|+|..+.|++|.|
T Consensus 181 ~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v 260 (457)
T TIGR01622 181 GDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKV 260 (457)
T ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEE
Confidence 1112378999999999999999999999999999998884 3689999999999999999999999999999999
Q ss_pred EecC
Q 037126 155 SSGH 158 (192)
Q Consensus 155 ~~a~ 158 (192)
.|+.
T Consensus 261 ~~a~ 264 (457)
T TIGR01622 261 GYAQ 264 (457)
T ss_pred EEcc
Confidence 9976
No 9
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=4.1e-24 Score=165.63 Aligned_cols=137 Identities=26% Similarity=0.461 Sum_probs=118.8
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCce-e--CCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVY-C--SSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQ 78 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~-~--~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (192)
|++|+.||.++|||||.|.+.++|.+|+.+||+.. + ...+|.|.+++.++..
T Consensus 66 l~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er------------------------- 120 (510)
T KOG0144|consen 66 LIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERER------------------------- 120 (510)
T ss_pred eecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhc-------------------------
Confidence 78999999999999999999999999999999976 4 3458899998755322
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCe-eCC--e
Q 037126 79 GSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTA-IGK--Q 150 (192)
Q Consensus 79 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~-~~g--~ 150 (192)
....++|||+-|++.++|.+++++|++||.|++|.|.+ +||+|||+|++.+.|..|++.|||.. +.| .
T Consensus 121 ----~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~ 196 (510)
T KOG0144|consen 121 ----IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQ 196 (510)
T ss_pred ----cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCC
Confidence 24568899999999999999999999999999999988 48999999999999999999999984 444 4
Q ss_pred EEEEEecCCCCCCCCCC
Q 037126 151 TVRLSSGHNPGNKQWRG 167 (192)
Q Consensus 151 ~l~v~~a~~~~~~~~~~ 167 (192)
+|.|+||+.++.+..+.
T Consensus 197 PLVVkFADtqkdk~~~~ 213 (510)
T KOG0144|consen 197 PLVVKFADTQKDKDGKR 213 (510)
T ss_pred ceEEEecccCCCchHHH
Confidence 89999998777765444
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.90 E-value=1.3e-22 Score=167.69 Aligned_cols=130 Identities=20% Similarity=0.384 Sum_probs=111.0
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHHhcC--ceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCC
Q 037126 7 NTDRTKGYGFVRFGDENERSRAMIEMNG--VYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGES 84 (192)
Q Consensus 7 ~tg~s~g~afV~f~~~~~A~~A~~~l~~--~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (192)
.++.++|||||+|.+.++|..|++.|+. ..+.|+.|.|.++.++.... .....
T Consensus 177 ~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d-------------------------~~~~~ 231 (578)
T TIGR01648 177 DKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVD-------------------------EDVMA 231 (578)
T ss_pred ccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccc-------------------------ccccc
Confidence 3568899999999999999999998864 45789999999986543211 11123
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccC--CCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCC
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSHF--GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGN 162 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~~--g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 162 (192)
...+|||+||+..+++++|+++|++| |.|.+|.+++ ++|||+|.+.++|.+|+..|||..++|+.|+|.|+++...
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 45789999999999999999999999 9999998774 7999999999999999999999999999999999987655
Q ss_pred C
Q 037126 163 K 163 (192)
Q Consensus 163 ~ 163 (192)
+
T Consensus 310 ~ 310 (578)
T TIGR01648 310 K 310 (578)
T ss_pred c
Confidence 4
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.90 E-value=4.8e-23 Score=173.14 Aligned_cols=132 Identities=33% Similarity=0.523 Sum_probs=115.5
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGS 80 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (192)
||++|..|++++|||||+|.+.++|++|++.+++..+.|++|+|.|+......
T Consensus 31 ~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~--------------------------- 83 (562)
T TIGR01628 31 RVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSL--------------------------- 83 (562)
T ss_pred EEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccc---------------------------
Confidence 47889999999999999999999999999999999999999999987532111
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
.......|||+|||.++++++|.++|+.||.|..|++.. ++|+|||+|.+.++|.+|+..++|..++|+.|.|.
T Consensus 84 -~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~ 162 (562)
T TIGR01628 84 -RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVG 162 (562)
T ss_pred -cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEe
Confidence 112345799999999999999999999999999998875 47999999999999999999999999999999998
Q ss_pred ecCCC
Q 037126 156 SGHNP 160 (192)
Q Consensus 156 ~a~~~ 160 (192)
.....
T Consensus 163 ~~~~~ 167 (562)
T TIGR01628 163 RFIKK 167 (562)
T ss_pred ccccc
Confidence 76543
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.88 E-value=9.6e-22 Score=165.31 Aligned_cols=146 Identities=27% Similarity=0.497 Sum_probs=116.9
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeC----CceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCS----SRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRV 77 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~----g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (192)
|++|. +|.++|||||+|.+.++|.+|++.++|..+. |+.+.|.++..+...............
T Consensus 210 i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~------------ 276 (562)
T TIGR01628 210 VMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQ------------ 276 (562)
T ss_pred EEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhh------------
Confidence 45564 7899999999999999999999999999999 999999987655332111000000000
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEE
Q 037126 78 QGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 152 (192)
Q Consensus 78 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l 152 (192)
...........|||+||+..+++++|+++|++||.|.+++++. ++|+|||+|.+.++|.+|+..+||..++|++|
T Consensus 277 ~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l 356 (562)
T TIGR01628 277 QERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPL 356 (562)
T ss_pred hhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCcee
Confidence 0011234456799999999999999999999999999999875 36999999999999999999999999999999
Q ss_pred EEEecCCC
Q 037126 153 RLSSGHNP 160 (192)
Q Consensus 153 ~v~~a~~~ 160 (192)
.|.++...
T Consensus 357 ~V~~a~~k 364 (562)
T TIGR01628 357 YVALAQRK 364 (562)
T ss_pred EEEeccCc
Confidence 99999753
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=1.8e-21 Score=161.90 Aligned_cols=152 Identities=16% Similarity=0.298 Sum_probs=111.8
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchh-hhcchhhhhccCCCCCCCCCCCCCCCCC
Q 037126 6 SNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQ-QQCSSQALVLAGGPASNGTRVQGSDGES 84 (192)
Q Consensus 6 ~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (192)
...+..+|||||+|.+.++|..|| +|+|..+.|++|.|............ ......... .................
T Consensus 217 ~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 293 (509)
T TIGR01642 217 VNINKEKNFAFLEFRTVEEATFAM-ALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPD--DNAKNVEKLVNSTTVLD 293 (509)
T ss_pred EEECCCCCEEEEEeCCHHHHhhhh-cCCCeEeeCceeEecCccccCCccccCCCCCCCCCc--ccccccccccccccCCC
Confidence 345678999999999999999999 69999999999999765432211000 000000000 00000000001122234
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
..+.|||+|||..+++++|.++|+.||.|..+.++. .+|+|||+|.+.+.|..|+..|+|..++|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 568999999999999999999999999999998875 36999999999999999999999999999999999986
Q ss_pred CC
Q 037126 159 NP 160 (192)
Q Consensus 159 ~~ 160 (192)
..
T Consensus 374 ~~ 375 (509)
T TIGR01642 374 VG 375 (509)
T ss_pred cC
Confidence 43
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.88 E-value=3.2e-21 Score=159.06 Aligned_cols=150 Identities=17% Similarity=0.238 Sum_probs=110.6
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhh-hcchhhh--hccCCCCCCCCCC----CCCCCC
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQ-QCSSQAL--VLAGGPASNGTRV----QGSDGE 83 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~----~~~~~~ 83 (192)
.+|||||+|.+.++|+.|++.|||..+.|++|+|.++..+....... ....... ............. ......
T Consensus 312 ~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~ 391 (481)
T TIGR01649 312 KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQ 391 (481)
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccC
Confidence 47999999999999999999999999999999999876542211100 0000000 0000000000000 001123
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCC--eEEEEEeCC----CceEEEEeCCHHHHHHHHHHhcCCeeCCeE------
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGE--ILSVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAIGKQT------ 151 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~--i~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~------ 151 (192)
.++.+|||+|||..+++++|+++|+.||. +..+++.+. +++|||+|.+.++|.+|+..|||..++++.
T Consensus 392 ~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~ 471 (481)
T TIGR01649 392 PPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYH 471 (481)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccce
Confidence 56789999999999999999999999998 888888764 489999999999999999999999999885
Q ss_pred EEEEecCCC
Q 037126 152 VRLSSGHNP 160 (192)
Q Consensus 152 l~v~~a~~~ 160 (192)
|+|+|++++
T Consensus 472 lkv~fs~~~ 480 (481)
T TIGR01649 472 LKVSFSTSR 480 (481)
T ss_pred EEEEeccCC
Confidence 999999754
No 15
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.87 E-value=1e-21 Score=136.55 Aligned_cols=135 Identities=29% Similarity=0.501 Sum_probs=116.6
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGS 80 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (192)
++.+|+.+...+|||||+|.++|+|+.|++.||...+.|++|+|..+... .
T Consensus 40 ~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~-----------------------------~ 90 (203)
T KOG0131|consen 40 HIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAH-----------------------------Q 90 (203)
T ss_pred ecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccc-----------------------------c
Confidence 35678889999999999999999999999999999999999999998622 1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEE-EEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSV-KIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~-~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
....-+..+||+||.+.++|..|.+.|+.||.+... .+++ +++++||.|.+.+.+..|+..++|..+..+++.
T Consensus 91 ~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~it 170 (203)
T KOG0131|consen 91 KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPIT 170 (203)
T ss_pred ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceE
Confidence 222334789999999999999999999999987653 4443 368999999999999999999999999999999
Q ss_pred EEecCCCCCCC
Q 037126 154 LSSGHNPGNKQ 164 (192)
Q Consensus 154 v~~a~~~~~~~ 164 (192)
|+|+..+..+.
T Consensus 171 v~ya~k~~~kg 181 (203)
T KOG0131|consen 171 VSYAFKKDTKG 181 (203)
T ss_pred EEEEEecCCCc
Confidence 99998776665
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.86 E-value=1.4e-20 Score=156.68 Aligned_cols=155 Identities=20% Similarity=0.266 Sum_probs=113.9
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSD 81 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (192)
|++|+.+|.++|||||+|.+.++|..|++.|+|..+.|+.|.|.++................... .............
T Consensus 327 ~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 404 (509)
T TIGR01642 327 LIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVT--LLAKALSQSILQI 404 (509)
T ss_pred EEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccc--cccccchhhhccc
Confidence 57788899999999999999999999999999999999999999986543221111000000000 0000000000012
Q ss_pred CCCCCceEEEcCCCCCC----------CHHHHHHHhccCCCeEEEEEeCC---------CceEEEEeCCHHHHHHHHHHh
Q 037126 82 GESNNATIFVGALDSDV----------SDKDLREPFSHFGEILSVKIPVG---------KGCGFVQFANRKDAEVALQKL 142 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~----------~~~~l~~~f~~~g~i~~~~~~~~---------~g~afv~f~~~~~a~~a~~~l 142 (192)
...++.+|+|.|+...- ..++|+++|++||.|..|.|++. .|++||+|.+.++|.+|+..|
T Consensus 405 ~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~l 484 (509)
T TIGR01642 405 GGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGM 484 (509)
T ss_pred cCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHc
Confidence 23567899999996421 12578999999999999998753 488999999999999999999
Q ss_pred cCCeeCCeEEEEEecC
Q 037126 143 QGTAIGKQTVRLSSGH 158 (192)
Q Consensus 143 ~g~~~~g~~l~v~~a~ 158 (192)
||..|+|+.|.+.|..
T Consensus 485 nGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 485 NGRKFNDRVVVAAFYG 500 (509)
T ss_pred CCCEECCeEEEEEEeC
Confidence 9999999999999975
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=3.7e-20 Score=135.65 Aligned_cols=160 Identities=28% Similarity=0.406 Sum_probs=121.5
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCC--ceeEEeecCCCCccchhhhc---------------chhh
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSS--RPMSIDVATPKKASGYQQQC---------------SSQA 63 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g--~~i~v~~~~~~~~~~~~~~~---------------~~~~ 63 (192)
||+.|..||.+||-|||.|...++|+.|+..|||..-.| .+|.|.++-.+......... .+..
T Consensus 158 RiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~ 237 (360)
T KOG0145|consen 158 RILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQA 237 (360)
T ss_pred hhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchh
Confidence 688899999999999999999999999999999998766 48999987655332111100 0000
Q ss_pred hhcc----C------CCCCCCCC--------CCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC----
Q 037126 64 LVLA----G------GPASNGTR--------VQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG---- 121 (192)
Q Consensus 64 ~~~~----~------~~~~~~~~--------~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~---- 121 (192)
.... . ...+.... ...+......-+|||.||.++++|.-|.++|++||.|..++++++
T Consensus 238 ~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttn 317 (360)
T KOG0145|consen 238 QRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTN 317 (360)
T ss_pred hhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcc
Confidence 0000 0 00000000 000223344678999999999999999999999999999999985
Q ss_pred --CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 037126 122 --KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 122 --~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 160 (192)
+|++||+..+.++|.+|+..|||..++++.|.|+|...+
T Consensus 318 kCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 318 KCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred cccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 699999999999999999999999999999999998644
No 18
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.85 E-value=1.5e-20 Score=155.47 Aligned_cols=144 Identities=20% Similarity=0.371 Sum_probs=112.3
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeC-CceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCS-SRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQG 79 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~-g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (192)
||++| .+|.++|||||+|.+.++|++||+.||+..+. |+.|.|..+
T Consensus 89 rl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S-------------------------------- 135 (578)
T TIGR01648 89 RLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS-------------------------------- 135 (578)
T ss_pred EEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc--------------------------------
Confidence 57889 69999999999999999999999999998884 777766543
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCC-eEEEEEeC-------CCceEEEEeCCHHHHHHHHHHhcC--CeeCC
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGE-ILSVKIPV-------GKGCGFVQFANRKDAEVALQKLQG--TAIGK 149 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~-i~~~~~~~-------~~g~afv~f~~~~~a~~a~~~l~g--~~~~g 149 (192)
...++|||+|||..+++++|.+.|++++. +..+.+.. .+|+|||+|.++++|.+|++.|+. ..++|
T Consensus 136 ----~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~G 211 (578)
T TIGR01648 136 ----VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 211 (578)
T ss_pred ----ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecC
Confidence 22478999999999999999999999863 44444432 479999999999999999998864 36789
Q ss_pred eEEEEEecCCCCCCCCCCCccchhccccCccccCCCCC
Q 037126 150 QTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNF 187 (192)
Q Consensus 150 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (192)
+.|.|.|+.+..... ..........|+.|+++
T Consensus 212 r~I~VdwA~p~~~~d------~~~~~~~k~LfVgNL~~ 243 (578)
T TIGR01648 212 HVIAVDWAEPEEEVD------EDVMAKVKILYVRNLMT 243 (578)
T ss_pred ceEEEEeeccccccc------ccccccccEEEEeCCCC
Confidence 999999997654322 11122334577777654
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.83 E-value=1.7e-19 Score=148.89 Aligned_cols=133 Identities=17% Similarity=0.207 Sum_probs=105.9
Q ss_pred cceEEEEEecCHHHHHHHHHHh--cCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCCCCce
Q 037126 11 TKGYGFVRFGDENERSRAMIEM--NGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNAT 88 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l--~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (192)
++|||||+|.+.++|+.|++.+ ++..+.|++|+|.++..+....... . .. ..........
T Consensus 37 ~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~-----------~---~~----~~~~~~~~~~ 98 (481)
T TIGR01649 37 GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGN-----------S---DF----DSAGPNKVLR 98 (481)
T ss_pred CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCC-----------C---cc----cCCCCCceEE
Confidence 5789999999999999999864 7788999999999986542111000 0 00 0011123457
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCC--ceEEEEeCCHHHHHHHHHHhcCCeeCC--eEEEEEecCCCC
Q 037126 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPVGK--GCGFVQFANRKDAEVALQKLQGTAIGK--QTVRLSSGHNPG 161 (192)
Q Consensus 89 l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~--g~afv~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~~~~ 161 (192)
|||.||++.+++++|.++|+.||.|.++.+.+.+ +.|||+|.+.++|.+|+..|||..+.| +.|+|.|+++..
T Consensus 99 v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 99 VIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred EEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 8999999999999999999999999999988754 589999999999999999999999854 589999998644
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=1.8e-19 Score=143.71 Aligned_cols=157 Identities=25% Similarity=0.404 Sum_probs=120.4
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSD 81 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (192)
|+.++.++++||||||+|+-++|+++|+....+..+.|+.|.|..+..+........ ........ ...........
T Consensus 37 vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~-~e~~~veK---~~~q~~~~k~~ 112 (678)
T KOG0127|consen 37 VVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEK-GENKAVEK---PIEQKRPTKAK 112 (678)
T ss_pred EecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhccc-ccchhhhc---ccccCCcchhh
Confidence 456777889999999999999999999999999999999999998876543321000 00000000 00000000011
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-----CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
...+.-.|+|.|||+.+.+.+|..+|+.||.|..+.|++. .|+|||.|....+|..|+..+||..++|++|-|.|
T Consensus 113 v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDW 192 (678)
T KOG0127|consen 113 VDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDW 192 (678)
T ss_pred ccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEee
Confidence 2344678999999999999999999999999999999863 38999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037126 157 GHNPGN 162 (192)
Q Consensus 157 a~~~~~ 162 (192)
|-+...
T Consensus 193 AV~Kd~ 198 (678)
T KOG0127|consen 193 AVDKDT 198 (678)
T ss_pred eccccc
Confidence 975544
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.82 E-value=1.1e-18 Score=143.56 Aligned_cols=157 Identities=20% Similarity=0.321 Sum_probs=112.8
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhh-c----------------chhhh
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQ-C----------------SSQAL 64 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~-~----------------~~~~~ 64 (192)
|++|+.+|.++|||||+|.+.++|..|++.|+|..+.|++|.|.++........... . .....
T Consensus 218 ~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (457)
T TIGR01622 218 LHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQL 297 (457)
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHH
Confidence 577888899999999999999999999999999999999999999653211100000 0 00000
Q ss_pred h----ccC-----------------------CCCC---------CCC-----CCCC--CCCCCCCceEEEcCCCCCCC--
Q 037126 65 V----LAG-----------------------GPAS---------NGT-----RVQG--SDGESNNATIFVGALDSDVS-- 99 (192)
Q Consensus 65 ~----~~~-----------------------~~~~---------~~~-----~~~~--~~~~~~~~~l~v~~lp~~~~-- 99 (192)
. ... +... ... .... .....+..+|+|.||.....
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~ 377 (457)
T TIGR01622 298 MEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEE 377 (457)
T ss_pred HHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccc
Confidence 0 000 0000 000 0000 01235678999999955433
Q ss_pred --------HHHHHHHhccCCCeEEEEEeC--CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 100 --------DKDLREPFSHFGEILSVKIPV--GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 100 --------~~~l~~~f~~~g~i~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
.++|.+.|++||.|..+.+.. ..|.+||+|.+.++|.+|+..|||..|+|+.|.+.|..
T Consensus 378 ~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~ 446 (457)
T TIGR01622 378 EPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVV 446 (457)
T ss_pred cchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEc
Confidence 267899999999999998873 46999999999999999999999999999999999985
No 22
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=6.6e-19 Score=139.62 Aligned_cols=124 Identities=30% Similarity=0.513 Sum_probs=111.0
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGS 80 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (192)
||.+|- | |.|||||.|.++++|++||+++|...+.|++|++-|+...
T Consensus 29 rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd------------------------------ 75 (369)
T KOG0123|consen 29 RVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD------------------------------ 75 (369)
T ss_pred EEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC------------------------------
Confidence 567887 5 9999999999999999999999999999999999998532
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
...+||.||++.++..+|.++|+.||.|.+|++.. .+|+ ||+|.+++.|.+|+..+||..+.|++|.|..
T Consensus 76 -----~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~ 149 (369)
T KOG0123|consen 76 -----PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGL 149 (369)
T ss_pred -----CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEee
Confidence 11199999999999999999999999999999886 3688 9999999999999999999999999999998
Q ss_pred cCCCCCC
Q 037126 157 GHNPGNK 163 (192)
Q Consensus 157 a~~~~~~ 163 (192)
.......
T Consensus 150 ~~~~~er 156 (369)
T KOG0123|consen 150 FERKEER 156 (369)
T ss_pred ccchhhh
Confidence 8654443
No 23
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=5.3e-19 Score=135.17 Aligned_cols=142 Identities=22% Similarity=0.391 Sum_probs=118.4
Q ss_pred cccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCC
Q 037126 3 IIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDG 82 (192)
Q Consensus 3 ~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (192)
-+|+.|++++|||||+|.-+|.|..|++.+||.+++||.|+|.+...-.....- . ....++
T Consensus 146 SWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpi--I-----------------D~vqee 206 (544)
T KOG0124|consen 146 SWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPI--I-----------------DMVQEE 206 (544)
T ss_pred ccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchH--H-----------------HHHHHH
Confidence 368999999999999999999999999999999999999999965432111100 0 000223
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
...-..|||..+.++.+|+||..+|+.||.|.+|.+.+ ++|++||+|.+......|+..+|-+.++|+.|+|..
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 35567899999999999999999999999999999986 479999999999999999999999999999999998
Q ss_pred cCCCCCC
Q 037126 157 GHNPGNK 163 (192)
Q Consensus 157 a~~~~~~ 163 (192)
+..+...
T Consensus 287 ~vTPP~a 293 (544)
T KOG0124|consen 287 CVTPPDA 293 (544)
T ss_pred ccCCCch
Confidence 8655444
No 24
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.78 E-value=9.4e-19 Score=143.26 Aligned_cols=130 Identities=22% Similarity=0.455 Sum_probs=110.7
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCCCCceE
Q 037126 10 RTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNATI 89 (192)
Q Consensus 10 ~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 89 (192)
-|.|||||+|.++++|+.|++.|+|+.+.|+.|.|.++..+........ .........|
T Consensus 558 lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~---------------------~~~kk~~tKI 616 (725)
T KOG0110|consen 558 LSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKK---------------------KSKKKKGTKI 616 (725)
T ss_pred cccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccc---------------------ccccccccee
Confidence 3669999999999999999999999999999999999873322211100 1122336789
Q ss_pred EEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 037126 90 FVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 90 ~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 160 (192)
+|.|+|+.++-.+++++|..||.+..++++. ++|+|||+|-+..+|.+|+..|.++.+.|+.|-+.||+.-
T Consensus 617 lVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 617 LVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred eeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 9999999999999999999999999999986 3799999999999999999999999999999999999744
No 25
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=1.5e-17 Score=132.93 Aligned_cols=154 Identities=23% Similarity=0.390 Sum_probs=112.1
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchh-------------------h----
Q 037126 7 NTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQ-------------------A---- 63 (192)
Q Consensus 7 ~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~-------------------~---- 63 (192)
..|.-.|||||+|....+|+.|++.+|+..|.||+|.|.|+.++............ .
T Consensus 153 ~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~ 232 (678)
T KOG0127|consen 153 KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDE 232 (678)
T ss_pred CCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccch
Confidence 35666699999999999999999999999999999999998777554321100000 0
Q ss_pred ------------hhcc-----------------CCCCCCCCCC-----C---CCCCCCCCceEEEcCCCCCCCHHHHHHH
Q 037126 64 ------------LVLA-----------------GGPASNGTRV-----Q---GSDGESNNATIFVGALDSDVSDKDLREP 106 (192)
Q Consensus 64 ------------~~~~-----------------~~~~~~~~~~-----~---~~~~~~~~~~l~v~~lp~~~~~~~l~~~ 106 (192)
.... .+..++.... + .........++||.|||+++++++|.+.
T Consensus 233 Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~ 312 (678)
T KOG0127|consen 233 EDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEH 312 (678)
T ss_pred hcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHH
Confidence 0000 0000000000 0 0112233489999999999999999999
Q ss_pred hccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHh-----cC-CeeCCeEEEEEecCCC
Q 037126 107 FSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKL-----QG-TAIGKQTVRLSSGHNP 160 (192)
Q Consensus 107 f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l-----~g-~~~~g~~l~v~~a~~~ 160 (192)
|++||.|.++.++. ++|.|||.|.+...|.+|+... .| ..++|+.|.|..|...
T Consensus 313 fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 313 FSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred HHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccch
Confidence 99999999998875 4699999999999999999876 23 6789999999998543
No 26
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.70 E-value=7.5e-16 Score=107.30 Aligned_cols=80 Identities=26% Similarity=0.623 Sum_probs=73.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
....+.|||+|||+.+++++|+++|++||.|..+.++. .+++|||+|.+.++|..|+..|++..++|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45577899999999999999999999999999998874 379999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037126 157 GHNPGN 162 (192)
Q Consensus 157 a~~~~~ 162 (192)
++....
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 975543
No 27
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.69 E-value=7.3e-17 Score=129.05 Aligned_cols=141 Identities=28% Similarity=0.496 Sum_probs=114.5
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGS 80 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (192)
+||.|+.+++++|.|||+|.|.+..-.|+ .|.|..+.|.+|.|..+...+.... . ......+.
T Consensus 210 riI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEaeknr~a------~----------~s~a~~~k 272 (549)
T KOG0147|consen 210 RIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEAEKNRAA------N----------ASPALQGK 272 (549)
T ss_pred EeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHHHHHHHH------h----------cccccccc
Confidence 58899999999999999999999999999 9999999999999998643321100 0 00000001
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
....+-..|||+||.+.+++++|+..|.+||.|..+.+..+ +|++||+|.+.++|.+|+..|||.++-|+.|+|
T Consensus 273 ~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV 352 (549)
T KOG0147|consen 273 GFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKV 352 (549)
T ss_pred ccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEE
Confidence 11222233999999999999999999999999999988763 699999999999999999999999999999999
Q ss_pred EecC
Q 037126 155 SSGH 158 (192)
Q Consensus 155 ~~a~ 158 (192)
....
T Consensus 353 ~~v~ 356 (549)
T KOG0147|consen 353 SVVT 356 (549)
T ss_pred EEee
Confidence 8864
No 28
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.68 E-value=1.5e-16 Score=118.35 Aligned_cols=115 Identities=21% Similarity=0.447 Sum_probs=106.5
Q ss_pred ceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCCCCceEEE
Q 037126 12 KGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNATIFV 91 (192)
Q Consensus 12 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 91 (192)
|-||||...+...|+.|+..|+|-.+.|..|.|+-++.+. ....+|+|
T Consensus 36 KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs--------------------------------k~stkl~v 83 (346)
T KOG0109|consen 36 KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS--------------------------------KASTKLHV 83 (346)
T ss_pred cccceEEeecccccHHHHhhcccceecceEEEEEeccccC--------------------------------CCcccccc
Confidence 5689999999999999999999999999999999987652 34567999
Q ss_pred cCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 037126 92 GALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 92 ~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 160 (192)
+|+.+.++..+|+..|.+||.+.+|.+++ +++||.|.-.++|..|++.|++++++|++|+|....+.
T Consensus 84 gNis~tctn~ElRa~fe~ygpviecdivk--dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 84 GNISPTCTNQELRAKFEKYGPVIECDIVK--DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred CCCCccccCHHHhhhhcccCCceeeeeec--ceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 99999999999999999999999999998 79999999999999999999999999999999998654
No 29
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=3.6e-16 Score=124.09 Aligned_cols=134 Identities=28% Similarity=0.529 Sum_probs=114.0
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGS 80 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (192)
||++|. .| ++|| ||+|.++++|++|++.+||..+.|+.|.|.....+........ .
T Consensus 107 kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~---------------------~ 162 (369)
T KOG0123|consen 107 KVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLG---------------------E 162 (369)
T ss_pred EEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhccccc---------------------c
Confidence 567776 45 9999 9999999999999999999999999999998766544322111 1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
....-..+|+.+++.+.++..|.+.|..+|.|..+.++. +++++||.|.+.++|..|+..+++..+++..+.|.
T Consensus 163 -~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~ 241 (369)
T KOG0123|consen 163 -YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVG 241 (369)
T ss_pred -hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeec
Confidence 233445678899999999999999999999999998886 37999999999999999999999999999999998
Q ss_pred ecCC
Q 037126 156 SGHN 159 (192)
Q Consensus 156 ~a~~ 159 (192)
.+..
T Consensus 242 ~aqk 245 (369)
T KOG0123|consen 242 RAQK 245 (369)
T ss_pred cccc
Confidence 8865
No 30
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.65 E-value=5.3e-15 Score=106.82 Aligned_cols=152 Identities=23% Similarity=0.300 Sum_probs=116.9
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhc--c--------------hhhhhccCCC
Q 037126 7 NTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQC--S--------------SQALVLAGGP 70 (192)
Q Consensus 7 ~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~--~--------------~~~~~~~~~~ 70 (192)
.|...||-|||.|.+.+.|-.|+.+|+|..+.|++++|.|+..+...-..... . .......+..
T Consensus 47 kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~ 126 (221)
T KOG4206|consen 47 KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHF 126 (221)
T ss_pred CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccc
Confidence 37789999999999999999999999999999999999999776543222110 0 0000000000
Q ss_pred CC---CCCC-CCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-CceEEEEeCCHHHHHHHHHHhcCC
Q 037126 71 AS---NGTR-VQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGT 145 (192)
Q Consensus 71 ~~---~~~~-~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~ 145 (192)
.. .... ........+...+++.|+|..++.+.+..+|.+|....+++++.+ ++.|||+|.+...|..|...|+|.
T Consensus 127 ~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~ 206 (221)
T KOG4206|consen 127 YNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGF 206 (221)
T ss_pred cccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccc
Confidence 00 0000 001334677889999999999999999999999999999999885 689999999999999999999999
Q ss_pred eeC-CeEEEEEecC
Q 037126 146 AIG-KQTVRLSSGH 158 (192)
Q Consensus 146 ~~~-g~~l~v~~a~ 158 (192)
.+. .++|.+.+++
T Consensus 207 ~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 207 KITKKNTMQITFAK 220 (221)
T ss_pred eeccCceEEecccC
Confidence 887 8899999885
No 31
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=6.1e-15 Score=111.49 Aligned_cols=84 Identities=29% Similarity=0.484 Sum_probs=75.8
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
.+.....+.|+|.|+|+...|.||+.+|.+||.|.+|.|+- +||++||+|++.++|++|...|||..+.||+|+|.
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 44456678999999999999999999999999999998874 58999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 037126 156 SGHNPGNK 163 (192)
Q Consensus 156 ~a~~~~~~ 163 (192)
.|..+-+.
T Consensus 170 ~ATarV~n 177 (376)
T KOG0125|consen 170 NATARVHN 177 (376)
T ss_pred ccchhhcc
Confidence 99765443
No 32
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.60 E-value=5.1e-15 Score=90.52 Aligned_cols=65 Identities=43% Similarity=0.782 Sum_probs=61.5
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-----CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 89 l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
|||+|||..+++++|.++|++||.+..+.+..+ +++|||+|.+.++|.+|+..++|..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999988773 68999999999999999999999999999885
No 33
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.59 E-value=2.6e-15 Score=115.65 Aligned_cols=138 Identities=22% Similarity=0.372 Sum_probs=115.5
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGS 80 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (192)
.||+|+.+++++||+||+|++++...+++ ......+.|+.|.+..+.++..... .
T Consensus 37 ~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av~r~~~~~------------------------~ 91 (311)
T KOG4205|consen 37 VVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAVSREDQTK------------------------V 91 (311)
T ss_pred EEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceeccCcccccc------------------------c
Confidence 37899999999999999999999999998 4455668999999998877654432 1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
........|||+++|.+++++++++.|.+||.|..+.++. .++++||+|.+++.+.+++. ..-+.+.|+.++|
T Consensus 92 ~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vev 170 (311)
T KOG4205|consen 92 GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEV 170 (311)
T ss_pred ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeE
Confidence 1123577999999999999999999999999888887764 47999999999999999977 5777899999999
Q ss_pred EecCCCCCCC
Q 037126 155 SSGHNPGNKQ 164 (192)
Q Consensus 155 ~~a~~~~~~~ 164 (192)
..|.+.....
T Consensus 171 krA~pk~~~~ 180 (311)
T KOG4205|consen 171 KRAIPKEVMQ 180 (311)
T ss_pred eeccchhhcc
Confidence 9997665544
No 34
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.59 E-value=1.2e-14 Score=116.46 Aligned_cols=158 Identities=18% Similarity=0.316 Sum_probs=109.1
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccc----hhhhcc-------------hhhh
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASG----YQQQCS-------------SQAL 64 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~----~~~~~~-------------~~~~ 64 (192)
+++|..||+++|||||+|...++|++|++.|||.++.|+.|+|.....+.... ...... ....
T Consensus 310 l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql 389 (549)
T KOG0147|consen 310 LTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQL 389 (549)
T ss_pred eccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHH
Confidence 45777799999999999999999999999999999999999997543221111 000000 0000
Q ss_pred hc--------------c---------------CCCCC--CCCCC-CCCCCCCCCceEEEcCCCCCC--CH--------HH
Q 037126 65 VL--------------A---------------GGPAS--NGTRV-QGSDGESNNATIFVGALDSDV--SD--------KD 102 (192)
Q Consensus 65 ~~--------------~---------------~~~~~--~~~~~-~~~~~~~~~~~l~v~~lp~~~--~~--------~~ 102 (192)
++ . ++..+ ...+. ..+.-..++.++.+.||-... ++ ++
T Consensus 390 ~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~ed 469 (549)
T KOG0147|consen 390 MAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIRED 469 (549)
T ss_pred HHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHH
Confidence 00 0 00000 00000 001112667788888884322 22 55
Q ss_pred HHHHhccCCCeEEEEEeCCC-ceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 037126 103 LREPFSHFGEILSVKIPVGK-GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHN 159 (192)
Q Consensus 103 l~~~f~~~g~i~~~~~~~~~-g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 159 (192)
+.+.+++||.|..|.+.... |+.||.|.+.+.|..|+..|||.-|.|+.|...|-..
T Consensus 470 V~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 470 VIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred HHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 66778999999999988754 9999999999999999999999999999999999753
No 35
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.58 E-value=1.4e-14 Score=114.39 Aligned_cols=80 Identities=24% Similarity=0.458 Sum_probs=73.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
......++|||+|||+++++++|+++|+.||.|..|+++.+ +|+|||+|.+.++|.+|+..|++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34556789999999999999999999999999999998753 589999999999999999999999999999999
Q ss_pred EecCCC
Q 037126 155 SSGHNP 160 (192)
Q Consensus 155 ~~a~~~ 160 (192)
.|+++.
T Consensus 182 ~~a~p~ 187 (346)
T TIGR01659 182 SYARPG 187 (346)
T ss_pred eccccc
Confidence 999753
No 36
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.5e-14 Score=95.52 Aligned_cols=76 Identities=28% Similarity=0.513 Sum_probs=70.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCC------ceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~------g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
....+++|||+||.+.++|++|.++|++.|+|..|.+-.++ |+|||+|...++|..|++.++|+.++.++|++.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 35678999999999999999999999999999999887653 899999999999999999999999999999999
Q ss_pred ec
Q 037126 156 SG 157 (192)
Q Consensus 156 ~a 157 (192)
|.
T Consensus 112 ~D 113 (153)
T KOG0121|consen 112 WD 113 (153)
T ss_pred cc
Confidence 96
No 37
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.53 E-value=8.9e-14 Score=103.86 Aligned_cols=73 Identities=27% Similarity=0.441 Sum_probs=68.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 037126 86 NATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG---KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHN 159 (192)
Q Consensus 86 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 159 (192)
.++|||+|||+.+++++|+++|+.||.|.+|.++.+ +|+|||+|.+.++|..|+. |+|..+.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 578999999999999999999999999999999864 6899999999999999996 999999999999999863
No 38
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=8.4e-14 Score=102.87 Aligned_cols=83 Identities=28% Similarity=0.474 Sum_probs=74.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
+.++.|.|||..||.+..+.+|.++|-+||.|.+.++.. +|-++||.|.+...|+.|+..+||..++=++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 367789999999999999999999999999998887764 46889999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 037126 156 SGHNPGNKQ 164 (192)
Q Consensus 156 ~a~~~~~~~ 164 (192)
+.++++.+.
T Consensus 361 LKRPkdanR 369 (371)
T KOG0146|consen 361 LKRPKDANR 369 (371)
T ss_pred hcCccccCC
Confidence 998776543
No 39
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=4.9e-14 Score=97.89 Aligned_cols=78 Identities=29% Similarity=0.528 Sum_probs=70.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC-CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCC
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGN 162 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 162 (192)
..+.|||+||+..+++.+|+..|..||.+..+-+.. +.|+|||+|++..+|..|+..|+|..+.|..|.|++..-...
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 368999999999999999999999999999886544 579999999999999999999999999999999999864443
No 40
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=2.1e-13 Score=86.80 Aligned_cols=80 Identities=18% Similarity=0.343 Sum_probs=72.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC---CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHN 159 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~---~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 159 (192)
..-++.|||.|||+.++.+++.++|++||.|.-|++-. .+|.|||.|++..+|.+|+..|+|..+.++.+.|-|..+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 34578999999999999999999999999999999875 479999999999999999999999999999999999865
Q ss_pred CCC
Q 037126 160 PGN 162 (192)
Q Consensus 160 ~~~ 162 (192)
...
T Consensus 95 ~~~ 97 (124)
T KOG0114|consen 95 EDA 97 (124)
T ss_pred HHH
Confidence 544
No 41
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.51 E-value=1.6e-13 Score=84.06 Aligned_cols=65 Identities=32% Similarity=0.648 Sum_probs=59.2
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-----CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 89 l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
|||+|||+.+++++|.++|+.||.|..+.+... ++.|||+|.+.++|..|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 789999999999999999999999999998875 59999999999999999999999999999874
No 42
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.49 E-value=1.8e-13 Score=114.07 Aligned_cols=75 Identities=23% Similarity=0.552 Sum_probs=69.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
...+.|||+|||+.+++++|+++|++||.|.+|.++. ++|+|||+|.+.++|..|+..|+|..++|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 4568999999999999999999999999999999874 4799999999999999999999999999999999875
Q ss_pred C
Q 037126 158 H 158 (192)
Q Consensus 158 ~ 158 (192)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 43
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=3.2e-13 Score=98.54 Aligned_cols=77 Identities=32% Similarity=0.502 Sum_probs=72.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
.+.+++.|.||+.+++|++|+++|.+||.|.++.+.++ +|+|||+|.+.++|.+|+..|+|+-++.-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 46788999999999999999999999999999988863 799999999999999999999999999999999999
Q ss_pred CCC
Q 037126 158 HNP 160 (192)
Q Consensus 158 ~~~ 160 (192)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 44
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.46 E-value=9.2e-13 Score=77.06 Aligned_cols=55 Identities=36% Similarity=0.603 Sum_probs=51.4
Q ss_pred HHHHhccCCCeEEEEEeCCC-ceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 103 LREPFSHFGEILSVKIPVGK-GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 103 l~~~f~~~g~i~~~~~~~~~-g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
|.++|++||.|..+.+.+.+ +.|||+|.+.++|..|+..|||..++|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 57899999999999999887 99999999999999999999999999999999986
No 45
>smart00362 RRM_2 RNA recognition motif.
Probab=99.44 E-value=1.3e-12 Score=79.49 Aligned_cols=68 Identities=49% Similarity=0.834 Sum_probs=63.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCC----ceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 88 TIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGK----GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 88 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
+|||+|||..+++++|+++|.+||.+..+.+.... ++|||+|.+.+.|..|+..+++..+.|+.++|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999988765 999999999999999999999999999998763
No 46
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.44 E-value=1.1e-12 Score=94.67 Aligned_cols=138 Identities=24% Similarity=0.414 Sum_probs=95.2
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCcee---CCceeEEeecCCCCccchhhhc---chhh-hhc--------------cC-
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGVYC---SSRPMSIDVATPKKASGYQQQC---SSQA-LVL--------------AG- 68 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~~~---~g~~i~v~~~~~~~~~~~~~~~---~~~~-~~~--------------~~- 68 (192)
.+.+|||+|.+..+|..|+.+|||+.| .+..++++.++...+....... .+.+ ... ..
T Consensus 76 ~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~ 155 (284)
T KOG1457|consen 76 CKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDE 155 (284)
T ss_pred ccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccc
Confidence 447999999999999999999999998 6789999987654332110000 0000 000 00
Q ss_pred ---C-------------------------------CCCC---CCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCC
Q 037126 69 ---G-------------------------------PASN---GTRVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFG 111 (192)
Q Consensus 69 ---~-------------------------------~~~~---~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g 111 (192)
+ ...+ ....+.........+|||.||...++|++|+.+|+.|.
T Consensus 156 ~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~ 235 (284)
T KOG1457|consen 156 GLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYP 235 (284)
T ss_pred cccCccccCCccccccCCCccccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCC
Confidence 0 0000 00011122234567899999999999999999999997
Q ss_pred CeEEEEEeC--CCceEEEEeCCHHHHHHHHHHhcCCeeC
Q 037126 112 EILSVKIPV--GKGCGFVQFANRKDAEVALQKLQGTAIG 148 (192)
Q Consensus 112 ~i~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~g~~~~ 148 (192)
....+++.. +--+||++|++.+.|..|+..|+|..+.
T Consensus 236 gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 236 GFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred CceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 777666654 3457999999999999999999998774
No 47
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=8.7e-13 Score=106.78 Aligned_cols=152 Identities=22% Similarity=0.347 Sum_probs=110.3
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGS 80 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (192)
+++.|..+|-++||||.+|.++.....|+..|||+.+.++.+.|..+............... +....-......
T Consensus 320 ~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~------~~~~~i~~~~~q 393 (500)
T KOG0120|consen 320 RLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQ------SQVPGIPLLMTQ 393 (500)
T ss_pred eeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccc------cccccchhhhcc
Confidence 35778888999999999999999999999999999999999999988655433221111000 000000001113
Q ss_pred CCCCCCceEEEcCCC--CC-CCH-------HHHHHHhccCCCeEEEEEeCC---------CceEEEEeCCHHHHHHHHHH
Q 037126 81 DGESNNATIFVGALD--SD-VSD-------KDLREPFSHFGEILSVKIPVG---------KGCGFVQFANRKDAEVALQK 141 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp--~~-~~~-------~~l~~~f~~~g~i~~~~~~~~---------~g~afv~f~~~~~a~~a~~~ 141 (192)
....+.+++.+.|+= .. ..+ ++++..+++||.|..|.+.++ -|-.||+|.+.++++.|+..
T Consensus 394 ~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~ 473 (500)
T KOG0120|consen 394 MAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEE 473 (500)
T ss_pred cCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHH
Confidence 344566666666651 11 122 455667889999999998863 47899999999999999999
Q ss_pred hcCCeeCCeEEEEEecC
Q 037126 142 LQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 142 l~g~~~~g~~l~v~~a~ 158 (192)
|+|+.|.|+++..+|..
T Consensus 474 L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 474 LTGRKFANRTVVASYYD 490 (500)
T ss_pred ccCceeCCcEEEEEecC
Confidence 99999999999998875
No 48
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=4.5e-13 Score=94.00 Aligned_cols=77 Identities=25% Similarity=0.443 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG---KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 160 (192)
...+.|||+|||.++.+.+|+++|.+||.|..|.+... -.+|||+|++..+|+.|+..-+|..++|+.|+|+++..-
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 45689999999999999999999999999999988653 479999999999999999999999999999999999633
No 49
>PLN03213 repressor of silencing 3; Provisional
Probab=99.43 E-value=1e-12 Score=104.65 Aligned_cols=78 Identities=19% Similarity=0.360 Sum_probs=71.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC--CCceEEEEeCCH--HHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV--GKGCGFVQFANR--KDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~--~~g~afv~f~~~--~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
....-.||||||++.+++++|+.+|+.||.|..+.|++ +||+|||+|... .++.+|+..|+|....|+.|+|..|+
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 34557899999999999999999999999999999987 589999999987 68999999999999999999999997
Q ss_pred CC
Q 037126 159 NP 160 (192)
Q Consensus 159 ~~ 160 (192)
+.
T Consensus 87 P~ 88 (759)
T PLN03213 87 EH 88 (759)
T ss_pred HH
Confidence 54
No 50
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.42 E-value=7.2e-12 Score=97.59 Aligned_cols=154 Identities=18% Similarity=0.331 Sum_probs=106.2
Q ss_pred cceE-EEEEecCHHHHHHHHHHhcCceeCC--ceeEEeecCCCCcc---c--hhhhcchhhhhcc---------------
Q 037126 11 TKGY-GFVRFGDENERSRAMIEMNGVYCSS--RPMSIDVATPKKAS---G--YQQQCSSQALVLA--------------- 67 (192)
Q Consensus 11 s~g~-afV~f~~~~~A~~A~~~l~~~~~~g--~~i~v~~~~~~~~~---~--~~~~~~~~~~~~~--------------- 67 (192)
+-|| |+|+|.+.+.|..|..+|+|..+.. ..++|.+++-..-. . ++..+.....-..
T Consensus 186 nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~ 265 (492)
T KOG1190|consen 186 NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFG 265 (492)
T ss_pred ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhcccc
Confidence 4455 8999999999999999999988743 48888876432211 0 0111110000000
Q ss_pred --------CCCCCCCC---CCC-CCCCCC-CCceEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeCC-CceEEEEeCCH
Q 037126 68 --------GGPASNGT---RVQ-GSDGES-NNATIFVGALDS-DVSDKDLREPFSHFGEILSVKIPVG-KGCGFVQFANR 132 (192)
Q Consensus 68 --------~~~~~~~~---~~~-~~~~~~-~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~-~g~afv~f~~~ 132 (192)
.....+.. ... +..... .+..|.|.||.. .+|.+.|..+|+.||+|.+|+|... +.-|+|.|.+.
T Consensus 266 ~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~ 345 (492)
T KOG1190|consen 266 SVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDG 345 (492)
T ss_pred ccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecch
Confidence 00000000 000 111111 267888888865 5899999999999999999998765 57799999999
Q ss_pred HHHHHHHHHhcCCeeCCeEEEEEecCCCCCCC
Q 037126 133 KDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQ 164 (192)
Q Consensus 133 ~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~ 164 (192)
..|+.|+..|+|..+.|++|+|.+.+++.-.-
T Consensus 346 ~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 346 QQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQL 377 (492)
T ss_pred hHHHHHHHHhhcceecCceEEEeeccCccccC
Confidence 99999999999999999999999999776543
No 51
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=2e-12 Score=106.63 Aligned_cols=172 Identities=23% Similarity=0.325 Sum_probs=111.7
Q ss_pred EEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccc----h--hhhc----chhhh---hccCCCCCC------CC
Q 037126 15 GFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASG----Y--QQQC----SSQAL---VLAGGPASN------GT 75 (192)
Q Consensus 15 afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~----~--~~~~----~~~~~---~~~~~~~~~------~~ 75 (192)
|+|+|..+.+|++|...|....+...++++.+.-...-.. . .... ..... ....+.... ..
T Consensus 424 aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~s 503 (725)
T KOG0110|consen 424 AIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEES 503 (725)
T ss_pred eeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccc
Confidence 8999999999999999999999988888887752111110 0 0000 00000 000000000 00
Q ss_pred CCC-CCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC---------CceEEEEeCCHHHHHHHHHHhcCC
Q 037126 76 RVQ-GSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG---------KGCGFVQFANRKDAEVALQKLQGT 145 (192)
Q Consensus 76 ~~~-~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~---------~g~afv~f~~~~~a~~a~~~l~g~ 145 (192)
... ..........||+.||+++++.+++...|...|.|..+.|... .|+|||+|.+.++|..|++.|+|+
T Consensus 504 s~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt 583 (725)
T KOG0110|consen 504 SLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT 583 (725)
T ss_pred cchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCc
Confidence 000 0111122233999999999999999999999999999988752 399999999999999999999999
Q ss_pred eeCCeEEEEEecCCCCCCCCCCCccchhccccCccccCCCCCC
Q 037126 146 AIGKQTVRLSSGHNPGNKQWRGDHINLIALAQDATYVNNRNFF 188 (192)
Q Consensus 146 ~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (192)
.++|+.|.|.++........ +..-. ...+-+...+.|++|.
T Consensus 584 vldGH~l~lk~S~~k~~~~~-gK~~~-~kk~~tKIlVRNipFe 624 (725)
T KOG0110|consen 584 VLDGHKLELKISENKPASTV-GKKKS-KKKKGTKILVRNIPFE 624 (725)
T ss_pred eecCceEEEEeccCcccccc-ccccc-cccccceeeeeccchH
Confidence 99999999999972222111 11111 1112456677776664
No 52
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.40 E-value=3.4e-12 Score=94.05 Aligned_cols=73 Identities=29% Similarity=0.338 Sum_probs=67.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG---KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
...+|||+||++.+++++|+++|+.||.|.+|.++++ +++|||+|++.+.+..|+. |+|..+.+++|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4578999999999999999999999999999999975 4799999999999999995 99999999999999975
No 53
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.39 E-value=1.2e-11 Score=94.50 Aligned_cols=158 Identities=14% Similarity=0.152 Sum_probs=111.4
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccc--h-------hhhcchhhhhccCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASG--Y-------QQQCSSQALVLAGGPA 71 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~ 71 (192)
||.++. .|.-+|=|.|.|-..++.+.|++.|++..+.|+.|+|+.+.-...-. . ................
T Consensus 173 KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~d 251 (382)
T KOG1548|consen 173 KLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLD 251 (382)
T ss_pred EEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcc
Confidence 456676 48899999999999999999999999999999999999764221110 0 0000000000000000
Q ss_pred CCCCCCCCCCCCCCCceEEEcCCCC----CCC-------HHHHHHHhccCCCeEEEEEe--CCCceEEEEeCCHHHHHHH
Q 037126 72 SNGTRVQGSDGESNNATIFVGALDS----DVS-------DKDLREPFSHFGEILSVKIP--VGKGCGFVQFANRKDAEVA 138 (192)
Q Consensus 72 ~~~~~~~~~~~~~~~~~l~v~~lp~----~~~-------~~~l~~~f~~~g~i~~~~~~--~~~g~afv~f~~~~~a~~a 138 (192)
-.... ..+......+++.+.|+-. ..+ .++|.+-+++||.|.++.+. ++.|.+-|.|.+.++|..|
T Consensus 252 w~pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~c 330 (382)
T KOG1548|consen 252 WRPDR-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQC 330 (382)
T ss_pred cCCCc-cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHH
Confidence 00011 1133456678888998733 122 25667778999999999988 5689999999999999999
Q ss_pred HHHhcCCeeCCeEEEEEecCCC
Q 037126 139 LQKLQGTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 139 ~~~l~g~~~~g~~l~v~~a~~~ 160 (192)
++.|+|+.|+|++|.-+...-.
T Consensus 331 iq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 331 IQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHhcCeeecceEEEEEEeCCc
Confidence 9999999999999998877533
No 54
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=4.4e-12 Score=95.06 Aligned_cols=85 Identities=24% Similarity=0.482 Sum_probs=77.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
..+-++|||+-|+..++|..|+..|+.||.|+.|.|++ ++|+|||+|++..+...|.+..+|..|+|+.|-|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 36789999999999999999999999999999999997 479999999999999999999999999999999999
Q ss_pred cCCCCCCCCCC
Q 037126 157 GHNPGNKQWRG 167 (192)
Q Consensus 157 a~~~~~~~~~~ 167 (192)
-.-...+.|-+
T Consensus 178 ERgRTvkgW~P 188 (335)
T KOG0113|consen 178 ERGRTVKGWLP 188 (335)
T ss_pred ccccccccccc
Confidence 87666665544
No 55
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.37 E-value=1.2e-11 Score=96.46 Aligned_cols=150 Identities=16% Similarity=0.177 Sum_probs=107.8
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchh-hhcchhhhhccCCCCCCCC--CCC--CCCCCCC
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQ-QQCSSQALVLAGGPASNGT--RVQ--GSDGESN 85 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~ 85 (192)
.+-.|+|+|+|...|+-|++.|+|..|.|++|+|.+++-....... ...+..-...+....-... +.+ ...--++
T Consensus 334 kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~Pp 413 (492)
T KOG1190|consen 334 KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPP 413 (492)
T ss_pred CCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCc
Confidence 3467999999999999999999999999999999998755332211 1111111111111000000 000 0222466
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCe-EEEEEeC-CCceEEEEeCCHHHHHHHHHHhcCCeeCCe-EEEEEecCCC
Q 037126 86 NATIFVGALDSDVSDKDLREPFSHFGEI-LSVKIPV-GKGCGFVQFANRKDAEVALQKLQGTAIGKQ-TVRLSSGHNP 160 (192)
Q Consensus 86 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i-~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~g~~~~g~-~l~v~~a~~~ 160 (192)
+.++++.|+|.+++|+++..+|..-|.. ....+.. ++.++++.+++.++|..|+..+|.+.++.. -++|+|.+..
T Consensus 414 satlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 414 SATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred hhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 7899999999999999999999887654 5555554 789999999999999999999999999754 8999998753
No 56
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.36 E-value=9e-12 Score=99.11 Aligned_cols=135 Identities=21% Similarity=0.360 Sum_probs=101.4
Q ss_pred cccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCC
Q 037126 3 IIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDG 82 (192)
Q Consensus 3 ~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (192)
+..+.+|+..|-|||+|.+++++++|+ +.+-..+..+.|.|..+.....-.. .....+..
T Consensus 40 ~~~r~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~~~~~e~d~~-------------------~~~~g~~s 99 (510)
T KOG4211|consen 40 EIPRRNGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFTAGGAEADWV-------------------MRPGGPNS 99 (510)
T ss_pred EEeccCCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEccCCcccccc-------------------ccCCCCCC
Confidence 444557999999999999999999999 6788889999999998754432110 00111222
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEE-EEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILS-VKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
......|.+.+||+.+++++|.++|+-.--+.. +.++. ..|.|||+|++.+.|++||.. |...++.+-|+|-.
T Consensus 100 ~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 100 SANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred CCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 245678899999999999999999997632322 33332 358999999999999999985 66778888888877
Q ss_pred cC
Q 037126 157 GH 158 (192)
Q Consensus 157 a~ 158 (192)
+.
T Consensus 179 Ss 180 (510)
T KOG4211|consen 179 SS 180 (510)
T ss_pred hH
Confidence 63
No 57
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.34 E-value=1.7e-11 Score=74.87 Aligned_cols=69 Identities=46% Similarity=0.790 Sum_probs=64.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-----CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 88 TIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 88 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
.|+|+|||..+++++|.++|+.+|.|..+.+... +++|+|+|.+.+.|..|+..+++..++|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4789999999999999999999999999988864 68999999999999999999999999999998875
No 58
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=2.7e-11 Score=85.14 Aligned_cols=133 Identities=17% Similarity=0.321 Sum_probs=98.3
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCCCCceEE
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNATIF 90 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 90 (192)
.-+||||+|.++.+|+.||...+|..+.|..|+|+++.......... ....-...........-.++.......+.
T Consensus 44 ~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~s~~~~----G~y~gggrgGgg~gg~rgppsrrSe~RVv 119 (241)
T KOG0105|consen 44 PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRSSSDRR----GSYSGGGRGGGGGGGRRGPPSRRSEYRVV 119 (241)
T ss_pred CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCCcccccc----cccCCCCCCCCCCCcccCCcccccceeEE
Confidence 35799999999999999999999999999999999987654221000 00000000000000011133334456777
Q ss_pred EcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeC
Q 037126 91 VGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIG 148 (192)
Q Consensus 91 v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~ 148 (192)
|.+||.+.+.++|++++...|+++...+.++ +.+.|+|...++..-|++.|....+.
T Consensus 120 VsGLp~SgSWQDLKDHmReaGdvCfadv~rD-g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 120 VSGLPPSGSWQDLKDHMREAGDVCFADVQRD-GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred EecCCCCCchHHHHHHHHhhCCeeeeeeecc-cceeeeeeehhhHHHHHHhhcccccc
Confidence 9999999999999999999999999998887 68999999999999999999888664
No 59
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.31 E-value=4.6e-12 Score=90.42 Aligned_cols=79 Identities=28% Similarity=0.502 Sum_probs=72.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
++....-..|-|.||-+.++.++|..+|++||.|-.|.|.++ +|+|||-|....+|+.|+.+|+|..++|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 344455678899999999999999999999999999999874 69999999999999999999999999999999
Q ss_pred EEecC
Q 037126 154 LSSGH 158 (192)
Q Consensus 154 v~~a~ 158 (192)
|.+|+
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 99985
No 60
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.8e-12 Score=92.40 Aligned_cols=82 Identities=29% Similarity=0.592 Sum_probs=75.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
....++|||++|-..++|..|...|-+||+|..|.++. .||++||+|...++|.+|+..+++-++-|++|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 35678999999999999999999999999999999986 489999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 037126 157 GHNPGNKQ 164 (192)
Q Consensus 157 a~~~~~~~ 164 (192)
|+|..-+.
T Consensus 87 AkP~kike 94 (298)
T KOG0111|consen 87 AKPEKIKE 94 (298)
T ss_pred cCCccccC
Confidence 99876653
No 61
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=6.7e-12 Score=91.54 Aligned_cols=135 Identities=22% Similarity=0.372 Sum_probs=105.0
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCC-CCCCCCCCCCCce
Q 037126 10 RTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGT-RVQGSDGESNNAT 88 (192)
Q Consensus 10 ~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 88 (192)
+..||+||+|.+..+|..|+..+|+..+.|-.+.|+++........ .+....... ...........+.
T Consensus 33 mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g-----------~~~~g~r~~~~~~~~~p~~s~~r 101 (216)
T KOG0106|consen 33 MKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRG-----------RPRGGDRRSDSRRYRPPSRTHFR 101 (216)
T ss_pred eecccceeccCchhhhhcccchhcCceecceeeeeecccccccccC-----------CCCCCCccchhhccCCcccccce
Confidence 4568999999999999999999999999998888888865321110 000000000 1111334566788
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 89 l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
+.|.++...+...+|.+.|.++|.+....+ ..+.+||+|+..++|..|+..|++..+.++.|.+.+.
T Consensus 102 ~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 102 LIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred eeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 999999999999999999999999855544 5688999999999999999999999999999999554
No 62
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=8.8e-12 Score=83.22 Aligned_cols=79 Identities=23% Similarity=0.482 Sum_probs=71.9
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
+..+...-.|||.++...++|++|.+.|..||.|+.+.+-.+ +|+|+|+|++..+|++|+..+||..+-|+.|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 444556678999999999999999999999999999988764 69999999999999999999999999999999
Q ss_pred EEecC
Q 037126 154 LSSGH 158 (192)
Q Consensus 154 v~~a~ 158 (192)
|.|+=
T Consensus 146 VDw~F 150 (170)
T KOG0130|consen 146 VDWCF 150 (170)
T ss_pred EEEEE
Confidence 99984
No 63
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=6.5e-13 Score=92.91 Aligned_cols=74 Identities=26% Similarity=0.539 Sum_probs=69.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
.++.-|||+|||+..+|.+|.-+|++||.|..|.++++ +|+||++|++.....-|+..|||..+.|+.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 55678999999999999999999999999999999984 699999999999999999999999999999999875
No 64
>smart00360 RRM RNA recognition motif.
Probab=99.27 E-value=3.2e-11 Score=72.94 Aligned_cols=65 Identities=42% Similarity=0.727 Sum_probs=59.4
Q ss_pred EcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 91 VGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 91 v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
|+|||..+++++|.++|+.||.|..+.+... +++|||+|.+.++|..|+..+++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5789999999999999999999999988764 5799999999999999999999999999998863
No 65
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.27 E-value=1.4e-11 Score=92.11 Aligned_cols=72 Identities=24% Similarity=0.565 Sum_probs=68.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 037126 87 ATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 87 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 160 (192)
..|||+|||..+++.+|+.+|++||+|.+|.|++ .++||..++...+..|++.|||..+.|..|.|+-++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK--NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec--ccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 4689999999999999999999999999999998 78999999999999999999999999999999998765
No 66
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.26 E-value=2.7e-11 Score=84.86 Aligned_cols=76 Identities=30% Similarity=0.568 Sum_probs=71.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
.....+|||+||+..++++-|.++|-+.|.|..+.+.++ +|+||++|.++++|+-|++.|+...+.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 355789999999999999999999999999999999873 69999999999999999999999999999999999
Q ss_pred cC
Q 037126 157 GH 158 (192)
Q Consensus 157 a~ 158 (192)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 87
No 67
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.26 E-value=1.7e-11 Score=102.10 Aligned_cols=99 Identities=29% Similarity=0.542 Sum_probs=87.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCC
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGN 162 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 162 (192)
...+++|||++|+..+++.+|..+|+.||.|.+|.++..+++|||+.....+|.+|+.+|....+.++.|+|.|+....-
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999975544
Q ss_pred CCCCCCccchhccccCccccCC
Q 037126 163 KQWRGDHINLIALAQDATYVNN 184 (192)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~ 184 (192)
+. .....|......+|+|+
T Consensus 498 ks---e~k~~wD~~lGVt~IP~ 516 (894)
T KOG0132|consen 498 KS---EYKDYWDVELGVTYIPW 516 (894)
T ss_pred ch---hhhhhhhcccCeeEeeh
Confidence 33 55566777777777765
No 68
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.26 E-value=2.7e-11 Score=87.78 Aligned_cols=79 Identities=27% Similarity=0.501 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHH----HhccCCCeEEEEEeC---CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 84 SNNATIFVGALDSDVSDKDLRE----PFSHFGEILSVKIPV---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~----~f~~~g~i~~~~~~~---~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
.++.+|||.||+..+..++|+. +|++||.|..|.... -+|-|||.|.+.+.|..|++.|+|..+.|+++++.|
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 4455999999999999999987 999999999998775 379999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037126 157 GHNPGN 162 (192)
Q Consensus 157 a~~~~~ 162 (192)
|+....
T Consensus 87 A~s~sd 92 (221)
T KOG4206|consen 87 AKSDSD 92 (221)
T ss_pred ccCccc
Confidence 975433
No 69
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=1.5e-11 Score=89.50 Aligned_cols=73 Identities=29% Similarity=0.465 Sum_probs=64.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
.-.+|||+||++.+..+.|++.|++||+|.+..++. +||++||+|.+.+.|.+|++. -...++||+..|.+|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 456899999999999999999999999999988774 479999999999999999985 4467899988887774
No 70
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=2.6e-11 Score=95.13 Aligned_cols=84 Identities=26% Similarity=0.559 Sum_probs=73.5
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCee---CCe
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAI---GKQ 150 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~---~g~ 150 (192)
+....+.-++||+.+|..++|.||+++|++||.|.+|.++++ +|+|||.|.+.++|.+|+..||.... ...
T Consensus 28 d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 28 DNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred CCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 444567789999999999999999999999999999999985 69999999999999999999988854 456
Q ss_pred EEEEEecCCCCCC
Q 037126 151 TVRLSSGHNPGNK 163 (192)
Q Consensus 151 ~l~v~~a~~~~~~ 163 (192)
+|.|+||+.+.++
T Consensus 108 pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 108 PVQVKYADGERER 120 (510)
T ss_pred ceeecccchhhhc
Confidence 8999999866554
No 71
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=3.3e-11 Score=92.86 Aligned_cols=75 Identities=23% Similarity=0.304 Sum_probs=61.6
Q ss_pred CCCCceEEEcCC--CCCCCH---HHHHHHhccCCCeEEEEEeCCC----------ceEEEEeCCHHHHHHHHHHhcCCee
Q 037126 83 ESNNATIFVGAL--DSDVSD---KDLREPFSHFGEILSVKIPVGK----------GCGFVQFANRKDAEVALQKLQGTAI 147 (192)
Q Consensus 83 ~~~~~~l~v~~l--p~~~~~---~~l~~~f~~~g~i~~~~~~~~~----------g~afv~f~~~~~a~~a~~~l~g~~~ 147 (192)
...++.+.++|+ |.+++| .+|.+.+++||.|.++.|..-+ ---||+|+...++.+|...|+|+.|
T Consensus 443 ~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfF 522 (544)
T KOG0124|consen 443 KQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFF 522 (544)
T ss_pred cccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhcccee
Confidence 455677888887 666664 7889999999999999888632 2369999999999999999999999
Q ss_pred CCeEEEEEec
Q 037126 148 GKQTVRLSSG 157 (192)
Q Consensus 148 ~g~~l~v~~a 157 (192)
+|+++.-+..
T Consensus 523 gGr~VvAE~Y 532 (544)
T KOG0124|consen 523 GGRKVVAEVY 532 (544)
T ss_pred cCceeehhhh
Confidence 9998765544
No 72
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.23 E-value=3.3e-10 Score=89.27 Aligned_cols=158 Identities=16% Similarity=0.320 Sum_probs=110.2
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhh-----------------------
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQ----------------------- 58 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~----------------------- 58 (192)
+.-|. .|++||||.|+|.++|.+++|++.||...+.||+|.|......+.....+.
T Consensus 77 Ll~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~ 155 (608)
T KOG4212|consen 77 LLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNG 155 (608)
T ss_pred eeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccc
Confidence 34565 799999999999999999999999999999999999986543221000000
Q ss_pred --------------cc-------hhhhhccCCCCCCCC-----------CCCCCCCCCCCceEEEcCCCCCCCHHHHHHH
Q 037126 59 --------------CS-------SQALVLAGGPASNGT-----------RVQGSDGESNNATIFVGALDSDVSDKDLREP 106 (192)
Q Consensus 59 --------------~~-------~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~ 106 (192)
.. ..+.....++..... .+...-..+....+||.||.+.+....|.+.
T Consensus 156 ~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qv 235 (608)
T KOG4212|consen 156 GGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQV 235 (608)
T ss_pred cCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHH
Confidence 00 000000000000000 0001112344567889999999999999999
Q ss_pred hccCCCeEEEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 037126 107 FSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 107 f~~~g~i~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 160 (192)
|.-.|.+..+.+.- ++|++.++|..+-+|..|+..|++.-+.++++.+++..-+
T Consensus 236 fgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~~~~ 294 (608)
T KOG4212|consen 236 FGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRLDRIP 294 (608)
T ss_pred hccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeeccccc
Confidence 99999998887653 4799999999999999999999987777888877775433
No 73
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.19 E-value=6.5e-11 Score=95.32 Aligned_cols=76 Identities=30% Similarity=0.565 Sum_probs=71.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 037126 87 ATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 87 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 160 (192)
+.+||+|+|+++++++|.++|+..|.|..++++.+ +|++|++|.+.+.|..|++.|+|..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999998864 699999999999999999999999999999999999655
Q ss_pred CC
Q 037126 161 GN 162 (192)
Q Consensus 161 ~~ 162 (192)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 74
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.19 E-value=1.5e-10 Score=88.42 Aligned_cols=73 Identities=36% Similarity=0.683 Sum_probs=69.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 86 NATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 86 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
..+|||+|||..+++++|.++|..||.+..+.+..+ +|+|||+|.+.++|..|+..++|..+.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 699999999999999999999999999999888754 5999999999999999999999999999999999975
No 75
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=4.9e-10 Score=88.42 Aligned_cols=75 Identities=23% Similarity=0.494 Sum_probs=68.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeC-CeEEEEEe
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIG-KQTVRLSS 156 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~ 156 (192)
...+-|||+.||.++.|++|.-+|++.|.|-+++++. +||+|||+|.+.+.|++|++.||+++|. |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 6678999999999999999999999999999999875 3899999999999999999999999985 88888877
Q ss_pred cC
Q 037126 157 GH 158 (192)
Q Consensus 157 a~ 158 (192)
+.
T Consensus 161 Sv 162 (506)
T KOG0117|consen 161 SV 162 (506)
T ss_pred ee
Confidence 64
No 76
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=1.1e-10 Score=86.66 Aligned_cols=102 Identities=31% Similarity=0.556 Sum_probs=81.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
.-..++|+-|...++-++|++.|.+||+|.++++++ ++|++||.|.+.++|+.|+..++|.-+++|.|+..||.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 356788999999999999999999999999999997 48999999999999999999999999999999999995
Q ss_pred CCCC-CCCCC----CccchhccccCccccCCCC
Q 037126 159 NPGN-KQWRG----DHINLIALAQDATYVNNRN 186 (192)
Q Consensus 159 ~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~ 186 (192)
.+.. ....+ +--++.++.....|+++.+
T Consensus 141 RKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~ 173 (321)
T KOG0148|consen 141 RKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIA 173 (321)
T ss_pred cCccccCCCCccHHHHhccCCCCCceEEeCCcC
Confidence 3321 11111 1122334555677777754
No 77
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=2.6e-10 Score=87.34 Aligned_cols=80 Identities=31% Similarity=0.617 Sum_probs=72.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHH-hcCCeeCCeEEEEEecC
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQK-LQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~-l~g~~~~g~~l~v~~a~ 158 (192)
++......+|||++|...++|.+|+++|.+||.|+.+.+...++.|||+|.+.+.|+.|... ++...++|..|.|.|.+
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 55566678999999999999999999999999999999999999999999999999998655 56667899999999998
Q ss_pred C
Q 037126 159 N 159 (192)
Q Consensus 159 ~ 159 (192)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 7
No 78
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.12 E-value=1.6e-10 Score=80.57 Aligned_cols=51 Identities=37% Similarity=0.686 Sum_probs=46.8
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
+|++|+.|++++|||||+|.+.++|+.|++.|++..+.|++|+|.++..+.
T Consensus 65 ~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~ 115 (144)
T PLN03134 65 KVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 115 (144)
T ss_pred EEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCC
Confidence 367888899999999999999999999999999999999999999987553
No 79
>smart00361 RRM_1 RNA recognition motif.
Probab=99.11 E-value=1.5e-10 Score=70.81 Aligned_cols=43 Identities=23% Similarity=0.579 Sum_probs=39.8
Q ss_pred ccccCCC--CCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEE
Q 037126 2 VIIDSNT--DRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44 (192)
Q Consensus 2 v~~d~~t--g~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 44 (192)
|++|+.+ +.++|||||+|.+.++|.+|++.|||..+.|+.|.+
T Consensus 25 v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 25 IYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred EEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 5677777 999999999999999999999999999999999976
No 80
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=3e-10 Score=92.23 Aligned_cols=147 Identities=18% Similarity=0.347 Sum_probs=112.0
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCCCCc
Q 037126 8 TDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNA 87 (192)
Q Consensus 8 tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (192)
....+.|||++|.+.++|..|+ .+++..+.|+++++...........-.. .....................+
T Consensus 219 ~n~~~nfa~ie~~s~~~at~~~-~~~~~~f~g~~~~~~r~~d~~~~p~~~~-------~~~~~~~~~~~~~~t~~~~~~~ 290 (500)
T KOG0120|consen 219 LNLEKNFAFIEFRSISEATEAM-ALDGIIFEGRPLKIRRPHDYQPVPGITL-------SPSQLGKVGLLPASTDVPDSPN 290 (500)
T ss_pred ecccccceeEEecCCCchhhhh-cccchhhCCCCceecccccccCCccchh-------hhccccccCCcccccCcccccc
Confidence 3567889999999999999999 8999999999999876544322210000 0000001111111134456678
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 037126 88 TIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPG 161 (192)
Q Consensus 88 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 161 (192)
.++|++||...++..+.+++..||.+....++. ++|+||.+|.+......|+..|||..+++++|.+..|....
T Consensus 291 ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 291 KIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred hhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 899999999999999999999999998877664 58999999999999999999999999999999999996443
Q ss_pred C
Q 037126 162 N 162 (192)
Q Consensus 162 ~ 162 (192)
.
T Consensus 371 ~ 371 (500)
T KOG0120|consen 371 S 371 (500)
T ss_pred h
Confidence 3
No 81
>smart00361 RRM_1 RNA recognition motif.
Probab=99.05 E-value=1.3e-09 Score=66.65 Aligned_cols=55 Identities=31% Similarity=0.516 Sum_probs=47.4
Q ss_pred HHHHHHHhc----cCCCeEEEE-E-eC-------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 100 DKDLREPFS----HFGEILSVK-I-PV-------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 100 ~~~l~~~f~----~~g~i~~~~-~-~~-------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
+++|+++|+ .||.|.++. + +. ++|++||+|.+.++|.+|+..|||..++|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 467788887 999999884 3 22 3799999999999999999999999999999876
No 82
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.03 E-value=1.8e-10 Score=89.37 Aligned_cols=152 Identities=16% Similarity=0.180 Sum_probs=105.3
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCC-CCCCCCCCCCCCC
Q 037126 6 SNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPA-SNGTRVQGSDGES 84 (192)
Q Consensus 6 ~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 84 (192)
+.+|+..|-|||.|..+++|+.|+. -|...++.|.|.+..+........-....+.......+.. -...+...-....
T Consensus 200 rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~ 278 (508)
T KOG1365|consen 200 RPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTR 278 (508)
T ss_pred CCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCC
Confidence 3478999999999999999999995 4666677788888876533222222222211111111100 0001111123344
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCC-CeEE--EEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSHFG-EILS--VKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~--~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
...+|.+.+||+.++.++|.++|..|. .|.. +.++. ..|.|||+|.+.+.|..|..+.|.....++.|+|-.
T Consensus 279 ~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 279 SKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 477899999999999999999999885 3333 55553 358999999999999999999998888899999987
Q ss_pred cC
Q 037126 157 GH 158 (192)
Q Consensus 157 a~ 158 (192)
+.
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 74
No 83
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=9.1e-10 Score=84.70 Aligned_cols=83 Identities=23% Similarity=0.419 Sum_probs=74.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCC------ceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~------g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
..++.++|||.-|.+-+++++|+-+|+.||.|..|.+++++ .+|||+|.+.+.+++|.-++++..++++.|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 36788999999999999999999999999999999999853 689999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 037126 156 SGHNPGNKQ 164 (192)
Q Consensus 156 ~a~~~~~~~ 164 (192)
|+.+-...+
T Consensus 315 FSQSVsk~k 323 (479)
T KOG0415|consen 315 FSQSVSKVK 323 (479)
T ss_pred hhhhhhhhh
Confidence 986554433
No 84
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.01 E-value=1.7e-08 Score=78.38 Aligned_cols=148 Identities=19% Similarity=0.235 Sum_probs=106.5
Q ss_pred eEEEEEecCHHHHHHHHHHhcCcee-CC-ceeEEeecCCCCccchhhhc------------------------------c
Q 037126 13 GYGFVRFGDENERSRAMIEMNGVYC-SS-RPMSIDVATPKKASGYQQQC------------------------------S 60 (192)
Q Consensus 13 g~afV~f~~~~~A~~A~~~l~~~~~-~g-~~i~v~~~~~~~~~~~~~~~------------------------------~ 60 (192)
--|.|+|.+.+.|++|..+|||..| .| .+|+|+++++.+-....... .
T Consensus 160 VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~ 239 (494)
T KOG1456|consen 160 VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLG 239 (494)
T ss_pred eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccC
Confidence 4699999999999999999999987 44 48999998766432100000 0
Q ss_pred hhhhhccC---CCCC------------CC-------CCCCCCCCCCCCceEEEcCCCCC-CCHHHHHHHhccCCCeEEEE
Q 037126 61 SQALVLAG---GPAS------------NG-------TRVQGSDGESNNATIFVGALDSD-VSDKDLREPFSHFGEILSVK 117 (192)
Q Consensus 61 ~~~~~~~~---~~~~------------~~-------~~~~~~~~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~ 117 (192)
..+..+.. ++.+ +. .....+....+.+.+.|.+|... ++-+.|..+|-.||.|.+|+
T Consensus 240 ~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvk 319 (494)
T KOG1456|consen 240 YHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVK 319 (494)
T ss_pred CChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEE
Confidence 00001110 0000 00 00001123456788999999775 67788999999999999999
Q ss_pred EeCCC-ceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 037126 118 IPVGK-GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 118 ~~~~~-g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 160 (192)
+++.+ |.|.|+..+....+.|+..|++..+-|.+|.|.+++..
T Consensus 320 FmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 320 FMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred EeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 99864 89999999999999999999999999999999998644
No 85
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=1.1e-09 Score=81.32 Aligned_cols=81 Identities=26% Similarity=0.557 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCee-C--CeEEEEE
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAI-G--KQTVRLS 155 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~-~--g~~l~v~ 155 (192)
...++|||+-|.+.-.|+|++.+|..||.|.+|.+.+ +||++||.|.+.-+|..|+..|||-.- - ...|-|+
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 3678999999999999999999999999999999987 489999999999999999999999754 2 4579999
Q ss_pred ecCCCCCCC
Q 037126 156 SGHNPGNKQ 164 (192)
Q Consensus 156 ~a~~~~~~~ 164 (192)
|++..+++.
T Consensus 97 ~ADTdkER~ 105 (371)
T KOG0146|consen 97 FADTDKERT 105 (371)
T ss_pred eccchHHHH
Confidence 997665543
No 86
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.95 E-value=6.4e-10 Score=79.62 Aligned_cols=49 Identities=27% Similarity=0.501 Sum_probs=45.4
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
|.+|+.|++++|||||.|.+..||+.|+++|+|.++.|+.|+|+.+.-.
T Consensus 45 IPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~aryg 93 (256)
T KOG4207|consen 45 IPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARYG 93 (256)
T ss_pred cccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhcC
Confidence 6789999999999999999999999999999999999999999876433
No 87
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.90 E-value=5.7e-08 Score=75.48 Aligned_cols=154 Identities=19% Similarity=0.145 Sum_probs=105.7
Q ss_pred cCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhc----chhhhhc---cCCCCCCCCCC
Q 037126 5 DSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQC----SSQALVL---AGGPASNGTRV 77 (192)
Q Consensus 5 d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~ 77 (192)
.+......|-|.|++.|....++|+..||+..+.|.+|.|..++-.......... +.+.... .+...++....
T Consensus 318 vkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qA 397 (494)
T KOG1456|consen 318 VKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQA 397 (494)
T ss_pred EEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHh
Confidence 3344455688999999999999999999999999999999987644332211000 0000000 01111111111
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeCCC----ceEEEEeCCHHHHHHHHHHhcCCeeCCe--
Q 037126 78 QGSDGESNNATIFVGALDSDVSDKDLREPFSHFG-EILSVKIPVGK----GCGFVQFANRKDAEVALQKLQGTAIGKQ-- 150 (192)
Q Consensus 78 ~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~g~-- 150 (192)
....-..++++|+.-|.|..++|+.|..+|...+ ...++++.+.+ ..+.++|++.++|..||..+|...+.+.
T Consensus 398 sKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~g 477 (494)
T KOG1456|consen 398 SKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNG 477 (494)
T ss_pred hcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCCCC
Confidence 1133457789999999999999999999997554 24667777643 5689999999999999999999988643
Q ss_pred ----EEEEEecC
Q 037126 151 ----TVRLSSGH 158 (192)
Q Consensus 151 ----~l~v~~a~ 158 (192)
.|++.|+.
T Consensus 478 s~PfilKlcfst 489 (494)
T KOG1456|consen 478 SFPFILKLCFST 489 (494)
T ss_pred CCCeeeeeeecc
Confidence 35555554
No 88
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.86 E-value=4.5e-08 Score=71.07 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=68.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC-C------CceEEEEeCCHHHHHHHHHHhcCCeeC---Ce
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-G------KGCGFVQFANRKDAEVALQKLQGTAIG---KQ 150 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~-~------~g~afv~f~~~~~a~~a~~~l~g~~~~---g~ 150 (192)
.+....++|||.+||.++-.-+|..+|..|...+.+.+.. + +-+||++|.+...|..|+..|||..|+ +.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 3345579999999999999999999999986666655432 2 258999999999999999999999996 78
Q ss_pred EEEEEecCCCCC
Q 037126 151 TVRLSSGHNPGN 162 (192)
Q Consensus 151 ~l~v~~a~~~~~ 162 (192)
.|++++|+...+
T Consensus 109 tLhiElAKSNtK 120 (284)
T KOG1457|consen 109 TLHIELAKSNTK 120 (284)
T ss_pred eeEeeehhcCcc
Confidence 999999985544
No 89
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.84 E-value=4.5e-08 Score=74.62 Aligned_cols=113 Identities=20% Similarity=0.400 Sum_probs=81.9
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCC-CCccchhhhcchhhhhccCCCCCCCCCCCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP-KKASGYQQQCSSQALVLAGGPASNGTRVQGS 80 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (192)
+.+|+.+|.++|||||+|.+.++|..|++.++|..+.|++|.|.+... .......... ..............
T Consensus 147 ~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 219 (306)
T COG0724 147 LVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNN-------LDASFAKKLSRGKA 219 (306)
T ss_pred eeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccccccccccccc-------cchhhhcccccccc
Confidence 567878999999999999999999999999999999999999999653 1111000000 00000001112224
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG 121 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~ 121 (192)
........+++.+++..+...++...|..+|.+....+...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 45566788999999999999999999999999977666653
No 90
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=6.8e-09 Score=84.12 Aligned_cols=74 Identities=31% Similarity=0.469 Sum_probs=68.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC-CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
.+...+.+.|+|-|||..+++++|.++|+.||+|+.++..+ .+|.+||+|.+..+|+.|++.|+++.+.|+.|+
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 44467789999999999999999999999999999988876 469999999999999999999999999999887
No 91
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.78 E-value=1.7e-08 Score=58.72 Aligned_cols=36 Identities=28% Similarity=0.664 Sum_probs=34.6
Q ss_pred ceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeec
Q 037126 12 KGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVA 47 (192)
Q Consensus 12 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 47 (192)
+|+|||+|.+.++|+.|++.|||..+.|++|+|.++
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 699999999999999999999999999999999885
No 92
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.75 E-value=5.7e-09 Score=84.27 Aligned_cols=53 Identities=30% Similarity=0.636 Sum_probs=48.9
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCcc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~ 53 (192)
|++.|+.||.++||||++|.++++|+.|++.|||.++.|++|+|.+.......
T Consensus 49 ~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~~ 101 (435)
T KOG0108|consen 49 RLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKNA 101 (435)
T ss_pred eecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccchh
Confidence 67899999999999999999999999999999999999999999998665443
No 93
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.74 E-value=4.5e-08 Score=77.45 Aligned_cols=75 Identities=25% Similarity=0.392 Sum_probs=68.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEe-CCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIP-VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~-~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
....+.|+|.|||++.|...|++-|..||.|.+..|+ +++..+.|.|.++++|+.|+..++|..++|+.|+|+|.
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 5667899999999999999999999999999998875 35556699999999999999999999999999999884
No 94
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.74 E-value=2.3e-08 Score=73.85 Aligned_cols=132 Identities=21% Similarity=0.368 Sum_probs=96.6
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSD 81 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (192)
++++. -+.-++++|+.|.....-.++-..-++..+.-++|+......-.+ +...+
T Consensus 131 ~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswed------------------------Psl~e 185 (290)
T KOG0226|consen 131 LVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWED------------------------PSLAE 185 (290)
T ss_pred hhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCC------------------------ccccc
Confidence 45554 367788899988887777776655555555444444432211100 01133
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
.......||++-|..+++++.|-..|.+|-.....++++ ++|++||.|.+..++..|++.++|.+++.++|+++
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 345567899999999999999999999997776666665 46999999999999999999999999999999887
Q ss_pred ecC
Q 037126 156 SGH 158 (192)
Q Consensus 156 ~a~ 158 (192)
-..
T Consensus 266 kS~ 268 (290)
T KOG0226|consen 266 KSE 268 (290)
T ss_pred hhh
Confidence 654
No 95
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.73 E-value=6.4e-08 Score=69.47 Aligned_cols=79 Identities=14% Similarity=0.315 Sum_probs=70.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccC-CCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHF-GEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~-g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
.....-.+|+..+|..+.+.++...|.++ |.+..+++.+ ++|+|||+|++.+.|.-|-..||+..+.++-|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34556678999999999999999999988 7888888876 4799999999999999999999999999999999
Q ss_pred EecCCC
Q 037126 155 SSGHNP 160 (192)
Q Consensus 155 ~~a~~~ 160 (192)
.+-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 997655
No 96
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.72 E-value=5.9e-08 Score=74.59 Aligned_cols=80 Identities=21% Similarity=0.361 Sum_probs=69.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEE--------EEEeCC-----CceEEEEeCCHHHHHHHHHHhcCCeeCC
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILS--------VKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGK 149 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g 149 (192)
..-+..|||.|||.++|.+++.++|+++|.|.+ |++++. +|-|+|+|...++..-|+..|++..+.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 344667999999999999999999999998865 666653 6899999999999999999999999999
Q ss_pred eEEEEEecCCCCC
Q 037126 150 QTVRLSSGHNPGN 162 (192)
Q Consensus 150 ~~l~v~~a~~~~~ 162 (192)
+.|+|..|+-+..
T Consensus 211 ~~~rVerAkfq~K 223 (382)
T KOG1548|consen 211 KKLRVERAKFQMK 223 (382)
T ss_pred cEEEEehhhhhhc
Confidence 9999999965433
No 97
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.70 E-value=1.8e-08 Score=72.24 Aligned_cols=49 Identities=27% Similarity=0.380 Sum_probs=45.2
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
+-|++.||.|+|||||+|.+++.|+-|-++||+..+.++.|.|.+.-+.
T Consensus 82 lsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 82 LSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred eecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 4488999999999999999999999999999999999999999987654
No 98
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.69 E-value=1.8e-07 Score=77.96 Aligned_cols=81 Identities=38% Similarity=0.666 Sum_probs=73.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC---------CCceEEEEeCCHHHHHHHHHHhcCCeeCCe
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV---------GKGCGFVQFANRKDAEVALQKLQGTAIGKQ 150 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~---------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~ 150 (192)
+...+....+||+|+++.+++..|...|+.||.+..++++. .+.++||-|-+..+|+.|++.|+|..+.+.
T Consensus 168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 55567788999999999999999999999999999998875 357899999999999999999999999999
Q ss_pred EEEEEecCCC
Q 037126 151 TVRLSSGHNP 160 (192)
Q Consensus 151 ~l~v~~a~~~ 160 (192)
.+++.|++.-
T Consensus 248 e~K~gWgk~V 257 (877)
T KOG0151|consen 248 EMKLGWGKAV 257 (877)
T ss_pred eeeecccccc
Confidence 9999999543
No 99
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.68 E-value=3.6e-08 Score=59.74 Aligned_cols=40 Identities=30% Similarity=0.635 Sum_probs=36.3
Q ss_pred cccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeE
Q 037126 3 IIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMS 43 (192)
Q Consensus 3 ~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~ 43 (192)
+.+ .++.++|+|||+|.+.++|+.|++.++|..+.|+.|+
T Consensus 31 ~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 31 MRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred ccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 444 5789999999999999999999999999999999885
No 100
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.2e-08 Score=72.57 Aligned_cols=52 Identities=25% Similarity=0.550 Sum_probs=47.2
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCcc
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~ 53 (192)
+..|-.++++||||||+|.-.|||..||..||+.++.||.|+|+++.+.+-.
T Consensus 42 iPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~kik 93 (298)
T KOG0111|consen 42 IPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKIK 93 (298)
T ss_pred cccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCcccc
Confidence 4567788999999999999999999999999999999999999999877543
No 101
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.62 E-value=2.6e-07 Score=69.13 Aligned_cols=81 Identities=31% Similarity=0.487 Sum_probs=70.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-----CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
.......|+|.|||..+.+++|+++|..||.+..+.+..+ .|.|-|.|...++|..|++.++|..++|+.|++..
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3344578999999999999999999999998888777643 48999999999999999999999999999999988
Q ss_pred cCCCCC
Q 037126 157 GHNPGN 162 (192)
Q Consensus 157 a~~~~~ 162 (192)
..++..
T Consensus 159 i~~~~~ 164 (243)
T KOG0533|consen 159 ISSPSQ 164 (243)
T ss_pred ecCccc
Confidence 765443
No 102
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.61 E-value=2.1e-08 Score=70.60 Aligned_cols=49 Identities=24% Similarity=0.469 Sum_probs=45.6
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
+|||+.||.|+||||..|.+..+...|+..|||..+.||.|+|......
T Consensus 67 LiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Y 115 (219)
T KOG0126|consen 67 LIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNY 115 (219)
T ss_pred EEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecccc
Confidence 6899999999999999999999999999999999999999999875443
No 103
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=7e-08 Score=70.68 Aligned_cols=74 Identities=22% Similarity=0.502 Sum_probs=67.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCC
Q 037126 87 ATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGN 162 (192)
Q Consensus 87 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 162 (192)
..+||++||+.+.+.+++.+|..||.+..+.+.. |++||+|.+..+|..|+..|++..+.|-.+.+.|++....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--ccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 3589999999999999999999999999998888 5669999999999999999999999998899999985433
No 104
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.58 E-value=1.2e-07 Score=57.61 Aligned_cols=41 Identities=27% Similarity=0.580 Sum_probs=36.4
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeE
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMS 43 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~ 43 (192)
++.++. |.++|+|||+|.++++|.+|++.+++..+.|+.|+
T Consensus 30 ~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 30 LIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred EEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 445654 89999999999999999999999999999999874
No 105
>smart00360 RRM RNA recognition motif.
Probab=98.57 E-value=1.3e-07 Score=56.82 Aligned_cols=44 Identities=30% Similarity=0.668 Sum_probs=38.7
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEe
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSID 45 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 45 (192)
+..++.++.++|+|||+|.+.++|..|++.+++..+.|+.|.|+
T Consensus 28 i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 28 LVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred EEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 34555578999999999999999999999999999999998873
No 106
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.57 E-value=1.7e-07 Score=76.57 Aligned_cols=80 Identities=20% Similarity=0.434 Sum_probs=71.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
....+.|||.+|...+.-.+|..+|++||.|...+++.. +-|+||++.+..+|.+|+..||.+.+.|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 345688999999999999999999999999999888752 67999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037126 157 GHNPGN 162 (192)
Q Consensus 157 a~~~~~ 162 (192)
++....
T Consensus 482 aKNEp~ 487 (940)
T KOG4661|consen 482 AKNEPG 487 (940)
T ss_pred cccCcc
Confidence 975543
No 107
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=1.5e-07 Score=71.06 Aligned_cols=50 Identities=24% Similarity=0.536 Sum_probs=45.9
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
+||+|+.||.++|||||+|.++.+...|.+..+|..|.|+.|.|.+-...
T Consensus 132 rlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgR 181 (335)
T KOG0113|consen 132 RLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGR 181 (335)
T ss_pred EEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecccc
Confidence 47899999999999999999999999999999999999999999875433
No 108
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.48 E-value=8.6e-08 Score=70.86 Aligned_cols=48 Identities=50% Similarity=0.812 Sum_probs=45.0
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 48 (192)
||++|+.||+++||+||.|.++.++..|+..++|..++.++|....+.
T Consensus 221 kviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 221 KVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred cccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 689999999999999999999999999999999999999999887654
No 109
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.46 E-value=3.3e-07 Score=71.14 Aligned_cols=82 Identities=24% Similarity=0.486 Sum_probs=71.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
..+.++|++|++.++++.|++.|.+||.|..|.+++ .++++||+|.+.+....++. ...+.++|+.|.+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 678999999999999999999999999999999886 47999999999999888877 35678999999999998
Q ss_pred CCCCCCCCC
Q 037126 159 NPGNKQWRG 167 (192)
Q Consensus 159 ~~~~~~~~~ 167 (192)
+....+...
T Consensus 84 ~r~~~~~~~ 92 (311)
T KOG4205|consen 84 SREDQTKVG 92 (311)
T ss_pred Ccccccccc
Confidence 776554333
No 110
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.42 E-value=1.7e-07 Score=68.55 Aligned_cols=47 Identities=38% Similarity=0.593 Sum_probs=40.9
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP 49 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~ 49 (192)
||.|+.||+|||||||+|.|.+.|++|++. .+-.|.||+-.++.+..
T Consensus 44 vitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 44 VITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 789999999999999999999999999954 44458999998887654
No 111
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.42 E-value=2.3e-07 Score=62.35 Aligned_cols=48 Identities=27% Similarity=0.364 Sum_probs=44.1
Q ss_pred cccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 3 IIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 3 ~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
-.|+.||-.+|||+|+|.+.++|++|++.+||..+.|++|.|.|.-.+
T Consensus 105 NLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 105 NLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred ccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 368889999999999999999999999999999999999999987544
No 112
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.39 E-value=2.7e-07 Score=64.71 Aligned_cols=41 Identities=20% Similarity=0.443 Sum_probs=38.1
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 10 RTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 10 ~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
...|||||+|.++.||+.|+..|+|..|+|..|+|+.+...
T Consensus 45 nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 45 NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 56799999999999999999999999999999999998654
No 113
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.35 E-value=4.2e-07 Score=69.56 Aligned_cols=42 Identities=29% Similarity=0.578 Sum_probs=38.6
Q ss_pred CCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 9 DRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 9 g~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
.-|||||||+|.+++||++|-++|||+.+.||+|.|..+..+
T Consensus 133 RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 133 RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 359999999999999999999999999999999999987544
No 114
>smart00362 RRM_2 RNA recognition motif.
Probab=98.34 E-value=1e-06 Score=52.91 Aligned_cols=37 Identities=30% Similarity=0.721 Sum_probs=34.3
Q ss_pred CCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEe
Q 037126 9 DRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSID 45 (192)
Q Consensus 9 g~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 45 (192)
+.++|+|||+|.+.++|+.|++.+++..+.|++|.|.
T Consensus 36 ~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 36 GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 6788999999999999999999999999999998873
No 115
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.32 E-value=1.3e-06 Score=70.48 Aligned_cols=74 Identities=31% Similarity=0.454 Sum_probs=63.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC----CC--ceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 037126 87 ATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GK--GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 87 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~----~~--g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 160 (192)
..|||.|||.+++..+|+++|..||.|+...|.. ++ .++||+|.+..++..|+.+ +-..+++++|.|+-.+..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 4499999999999999999999999999987654 22 7899999999999999986 577889999999987654
Q ss_pred C
Q 037126 161 G 161 (192)
Q Consensus 161 ~ 161 (192)
.
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 3
No 116
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.31 E-value=9.4e-07 Score=58.90 Aligned_cols=44 Identities=23% Similarity=0.431 Sum_probs=41.3
Q ss_pred ccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeec
Q 037126 4 IDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVA 47 (192)
Q Consensus 4 ~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 47 (192)
.|+.+....|||||+|.+.++|+.|++.++|+.+..++|++.+.
T Consensus 70 Ldr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 70 LDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred cccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 47888889999999999999999999999999999999999874
No 117
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.30 E-value=1.8e-06 Score=66.72 Aligned_cols=135 Identities=27% Similarity=0.367 Sum_probs=98.6
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHHhcCc-eeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCC
Q 037126 6 SNTDRTKGYGFVRFGDENERSRAMIEMNGV-YCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGES 84 (192)
Q Consensus 6 ~~tg~s~g~afV~f~~~~~A~~A~~~l~~~-~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (192)
.....++|++.+.|...+.+..|+. +.+. ...++.+............. .........
T Consensus 124 ~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl~~~~~~~~~--------------------n~~~~~~~~ 182 (285)
T KOG4210|consen 124 EDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDLNTRRGLRPK--------------------NKLSRLSSG 182 (285)
T ss_pred ccccccccceeeccccHHHHHHHHH-hhhccccccccccCccccccccccc--------------------chhcccccC
Confidence 4467899999999999999999995 4553 45555444333322210000 000011223
Q ss_pred CCceEE-EcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 85 NNATIF-VGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 85 ~~~~l~-v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
....++ ++++++.+++++|...|..+|.|..+++... +++++|.|.....+..++.. ++..+.++++.+.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 344455 9999999999999999999999999988762 68999999999999999887 888999999999999
Q ss_pred CCCCC
Q 037126 158 HNPGN 162 (192)
Q Consensus 158 ~~~~~ 162 (192)
.+...
T Consensus 262 ~~~~~ 266 (285)
T KOG4210|consen 262 EPRPK 266 (285)
T ss_pred CCCcc
Confidence 76544
No 118
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.26 E-value=4.7e-06 Score=62.43 Aligned_cols=79 Identities=24% Similarity=0.402 Sum_probs=70.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
....+...+|++|+.+.++.+++...|+.||.+..+.+.. .+|++||+|.+.+.+.+|+. |+|..+.|+.+++
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 4467788999999999999888999999999998776664 47899999999999999999 9999999999999
Q ss_pred EecCCC
Q 037126 155 SSGHNP 160 (192)
Q Consensus 155 ~~a~~~ 160 (192)
.+.+-.
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 998643
No 119
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.24 E-value=7.6e-06 Score=50.62 Aligned_cols=68 Identities=22% Similarity=0.406 Sum_probs=47.7
Q ss_pred ceEEEcCCCCCCCHHHH----HHHhccCC-CeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 87 ATIFVGALDSDVSDKDL----REPFSHFG-EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 87 ~~l~v~~lp~~~~~~~l----~~~f~~~g-~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
..|+|.|||...+...| ++++..+| .|..+ ..+.|+|.|.+.+.|..|.+.++|-.+-|++|.|+|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 36899999999887555 56666765 66666 35889999999999999999999999999999999985
No 120
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.20 E-value=7.7e-07 Score=64.60 Aligned_cols=76 Identities=25% Similarity=0.346 Sum_probs=68.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCC----ceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGK----GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
....++|||+|+...++|+-|.++|-+.|.|.++.|..++ .+|||.|.++....-|+..+||..+.+..+.+.+-.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 3556899999999999999999999999999999888642 489999999999999999999999999998888753
No 121
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.17 E-value=8.7e-06 Score=53.54 Aligned_cols=59 Identities=32% Similarity=0.553 Sum_probs=40.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCC
Q 037126 87 ATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT 145 (192)
Q Consensus 87 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~ 145 (192)
+.|.+.+++..++.++|.+.|+.||.|..|.+.++-..|+|-|.+.+.|..|+..+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 56888899999999999999999999999999999899999999999999999887443
No 122
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.15 E-value=4e-05 Score=60.19 Aligned_cols=134 Identities=26% Similarity=0.289 Sum_probs=89.2
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCCCCc
Q 037126 8 TDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNA 87 (192)
Q Consensus 8 tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (192)
.|+.-|.|.|.|.|+|.-+-|+ ..+...+.+++|.|-.+...+-.. .+++.+..... -......-
T Consensus 98 qgrRnge~lvrf~d~e~Rdlal-kRhkhh~g~ryievYka~ge~f~~------------iagg~s~e~~~--flsk~~qv 162 (508)
T KOG1365|consen 98 QGRRNGEALVRFVDPEGRDLAL-KRHKHHMGTRYIEVYKATGEEFLK------------IAGGTSNEAAP--FLSKENQV 162 (508)
T ss_pred hhccccceEEEecCchhhhhhh-HhhhhhccCCceeeeccCchhheE------------ecCCccccCCC--CCCcccce
Confidence 4566799999999999999999 568888899999887654432110 01111111110 11112344
Q ss_pred eEEEcCCCCCCCHHHHHHHhccC----CCeEEEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 88 TIFVGALDSDVSDKDLREPFSHF----GEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 88 ~l~v~~lp~~~~~~~l~~~f~~~----g~i~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
.+...+||+++++.++.++|.+- |....+.++. ..|.|||.|..+++|+.||.+ |...++-|.|++-.+
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRS 240 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHH
Confidence 56678999999999999999743 2344555543 258999999999999999986 444455555555433
No 123
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.15 E-value=3.4e-06 Score=72.33 Aligned_cols=124 Identities=19% Similarity=0.371 Sum_probs=102.5
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCCCCc
Q 037126 8 TDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNA 87 (192)
Q Consensus 8 tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (192)
-++-..||||.|.....+..|...+.+..|..-.+++.+... ......
T Consensus 409 ~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~--------------------------------kst~tt 456 (975)
T KOG0112|consen 409 IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP--------------------------------KSTPTT 456 (975)
T ss_pred CCcccchhhhhhhccccCcccchhhcCCccccCccccccccc--------------------------------ccccce
Confidence 345567899999999999999888888776555555555422 235567
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCC--eEEEEEecCCCCCC
Q 037126 88 TIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGK--QTVRLSSGHNPGNK 163 (192)
Q Consensus 88 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~~~~~~ 163 (192)
.+++++|+.......|..+|..||.|..|.+-++..+++|.|++...++.|+..+.|..++| +.+.|.|+......
T Consensus 457 r~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 457 RLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred eeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999974 46999999755443
No 124
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.14 E-value=1.4e-05 Score=64.43 Aligned_cols=77 Identities=22% Similarity=0.385 Sum_probs=64.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC----CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
......|-+.+||+++|+++|.++|+.+ .|..+.+.+. .|.|+|+|.+.+++.+|+++ +...++.+.|+|--+.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAG 84 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccC
Confidence 3445667789999999999999999998 5888877763 58999999999999999994 6677888889998875
Q ss_pred CCC
Q 037126 159 NPG 161 (192)
Q Consensus 159 ~~~ 161 (192)
...
T Consensus 85 ~~e 87 (510)
T KOG4211|consen 85 GAE 87 (510)
T ss_pred Ccc
Confidence 443
No 125
>PLN03213 repressor of silencing 3; Provisional
Probab=98.11 E-value=3.8e-06 Score=67.84 Aligned_cols=43 Identities=12% Similarity=0.344 Sum_probs=38.0
Q ss_pred CCCCCcceEEEEEecCH--HHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 6 SNTDRTKGYGFVRFGDE--NERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 6 ~~tg~s~g~afV~f~~~--~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
+.|| ||||||+|.+. .++.+||..|||..|+|+.|+|+.+++.
T Consensus 44 RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 44 RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 4467 99999999988 7899999999999999999999987543
No 126
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.09 E-value=1.2e-05 Score=67.48 Aligned_cols=147 Identities=14% Similarity=0.086 Sum_probs=98.5
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcc-hhhhhc---cCC--CCCCCCCCCC---C
Q 037126 10 RTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS-SQALVL---AGG--PASNGTRVQG---S 80 (192)
Q Consensus 10 ~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~-~~~~~~---~~~--~~~~~~~~~~---~ 80 (192)
--.|-++|.|....++.+|+ ..+.+.+-.|++.+...-...-........ ...... ... ...+.....+ .
T Consensus 350 ~~tG~~~v~f~~~~~~q~A~-~rn~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp 428 (944)
T KOG4307|consen 350 PQTGRKTVMFTPQAPFQNAF-TRNPSDDVNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVP 428 (944)
T ss_pred CcCCceEEEecCcchHHHHH-hcCchhhhhcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCC
Confidence 33789999999999999999 668888888998887654332111110000 000000 000 0011111111 2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEE-EEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILS-VKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
..-....+|||..||..+++.++.++|..-..|++ |.+.+ -++.|||.|..+.++..|+..-+.++++.+.|+|
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 23345789999999999999999999987666666 55554 2588999999999999988776777888888999
Q ss_pred Eec
Q 037126 155 SSG 157 (192)
Q Consensus 155 ~~a 157 (192)
.-.
T Consensus 509 ~si 511 (944)
T KOG4307|consen 509 DSI 511 (944)
T ss_pred ech
Confidence 865
No 127
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.07 E-value=3.9e-05 Score=49.47 Aligned_cols=76 Identities=17% Similarity=0.302 Sum_probs=59.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccC--CCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeC----CeEEEE
Q 037126 87 ATIFVGALDSDVSDKDLREPFSHF--GEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIG----KQTVRL 154 (192)
Q Consensus 87 ~~l~v~~lp~~~~~~~l~~~f~~~--g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~----g~~l~v 154 (192)
.+|.+.|+|...+.++|.+++... |..-.+-++- ..|+|||.|.+++.|..-.+.++|+... .+.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 468899999999999998887643 3333333332 3699999999999999999999999764 667999
Q ss_pred EecCCCCC
Q 037126 155 SSGHNPGN 162 (192)
Q Consensus 155 ~~a~~~~~ 162 (192)
.||+-+..
T Consensus 82 ~yAriQG~ 89 (97)
T PF04059_consen 82 SYARIQGK 89 (97)
T ss_pred ehhHhhCH
Confidence 99975543
No 128
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.07 E-value=5.4e-06 Score=53.29 Aligned_cols=49 Identities=24% Similarity=0.329 Sum_probs=43.3
Q ss_pred cccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 3 IIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 3 ~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
||.-.+...+|-|||.|.+..+|.+|++.|+|..+.++.+.|-+..+.+
T Consensus 48 IRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 48 IRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred EEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 4555567899999999999999999999999999999999999876543
No 129
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.06 E-value=1.2e-05 Score=48.43 Aligned_cols=37 Identities=32% Similarity=0.741 Sum_probs=34.4
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEee
Q 037126 10 RTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDV 46 (192)
Q Consensus 10 ~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 46 (192)
.++|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 38 ~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 38 KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 6789999999999999999999999999999998864
No 130
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.01 E-value=1e-05 Score=61.00 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=36.2
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 10 RTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 10 ~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
.++|||||+|.++++|+.|+ .|+|..+.|+.|.|.+....
T Consensus 41 ~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 41 ERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccCC
Confidence 46899999999999999999 69999999999999997543
No 131
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=0.0002 Score=58.33 Aligned_cols=118 Identities=25% Similarity=0.341 Sum_probs=78.1
Q ss_pred eEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccC-CCCCCCCCCCCCCCCCCCceEEE
Q 037126 13 GYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAG-GPASNGTRVQGSDGESNNATIFV 91 (192)
Q Consensus 13 g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~v 91 (192)
||+|+.|.++.....-+.++.- ......+..+.++..... -.-.++...+ ..... ......+.++|||
T Consensus 307 ~YvflvFe~E~sV~~Ll~aC~~---~~~~~yf~vss~~~k~k~---VQIrPW~laDs~fv~d-----~sq~lDprrTVFV 375 (520)
T KOG0129|consen 307 GYVFLVFEDERSVQSLLSACSE---GEGNYYFKVSSPTIKDKE---VQIRPWVLADSDFVLD-----HNQPIDPRRTVFV 375 (520)
T ss_pred cEEEEEecchHHHHHHHHHHhh---cccceEEEEecCcccccc---eeEEeeEeccchhhhc-----cCcccCccceEEe
Confidence 4999999999998887766543 222333332222211100 0000011111 11111 1444577899999
Q ss_pred cCCCCCCCHHHHHHHhc-cCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHH
Q 037126 92 GALDSDVSDKDLREPFS-HFGEILSVKIPV------GKGCGFVQFANRKDAEVALQK 141 (192)
Q Consensus 92 ~~lp~~~~~~~l~~~f~-~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~ 141 (192)
|+||.-++-++|-.+|. -||.|+.+.|-. ++|.+-|+|++...-.+|+.+
T Consensus 376 Ggvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 376 GGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 99999999999999998 699999987764 479999999999999999875
No 132
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=7.7e-06 Score=63.48 Aligned_cols=48 Identities=25% Similarity=0.488 Sum_probs=45.5
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP 49 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~ 49 (192)
||+|+.||.+.-||||+|.+.+++++|.-.|++..|..+.|+|.++..
T Consensus 271 VIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 271 VIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred EEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 789999999999999999999999999999999999999999998643
No 133
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.92 E-value=5.3e-07 Score=71.27 Aligned_cols=120 Identities=17% Similarity=0.302 Sum_probs=100.3
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCce-eCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCCCCceE
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGVY-CSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNATI 89 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~~-~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 89 (192)
..|||||.+.+..-|-+|++.++|.. +.|+++.+.++.++... .+.+
T Consensus 36 k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqr--------------------------------srk~ 83 (584)
T KOG2193|consen 36 KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQR--------------------------------SRKI 83 (584)
T ss_pred ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHH--------------------------------hhhh
Confidence 34999999999999999999999965 89999999998766433 2336
Q ss_pred EEcCCCCCCCHHHHHHHhccCCCeEEEEEeC-C--CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCC
Q 037126 90 FVGALDSDVSDKDLREPFSHFGEILSVKIPV-G--KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGN 162 (192)
Q Consensus 90 ~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~-~--~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 162 (192)
-+.|+|.....+.|..++..||.+..|..+. + ....-|+|...+.+..|+..|+|..+....+++.|--.+..
T Consensus 84 Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 84 QIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQN 159 (584)
T ss_pred hHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhhh
Confidence 6889999999999999999999999886654 2 24456889999999999999999999999999999744433
No 134
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.91 E-value=6.7e-05 Score=58.07 Aligned_cols=79 Identities=15% Similarity=0.391 Sum_probs=64.5
Q ss_pred CCCCCCCceEEEcCCCCCCCHHH----H--HHHhccCCCeEEEEEeCC---------CceEEEEeCCHHHHHHHHHHhcC
Q 037126 80 SDGESNNATIFVGALDSDVSDKD----L--REPFSHFGEILSVKIPVG---------KGCGFVQFANRKDAEVALQKLQG 144 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~----l--~~~f~~~g~i~~~~~~~~---------~g~afv~f~~~~~a~~a~~~l~g 144 (192)
..+.....-+||-++|+.+..++ | .++|++||.|..|.+-+. .-..+|+|.+.++|..|+...+|
T Consensus 108 niRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDg 187 (480)
T COG5175 108 NIRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDG 187 (480)
T ss_pred cceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcc
Confidence 34456677899999988865444 2 588999999999987652 12369999999999999999999
Q ss_pred CeeCCeEEEEEecC
Q 037126 145 TAIGKQTVRLSSGH 158 (192)
Q Consensus 145 ~~~~g~~l~v~~a~ 158 (192)
..++|+.|+..|..
T Consensus 188 s~~DGr~lkatYGT 201 (480)
T COG5175 188 SLLDGRVLKATYGT 201 (480)
T ss_pred ccccCceEeeecCc
Confidence 99999999999873
No 135
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.89 E-value=8.6e-06 Score=69.54 Aligned_cols=106 Identities=14% Similarity=0.206 Sum_probs=86.5
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCCCC
Q 037126 7 NTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNN 86 (192)
Q Consensus 7 ~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (192)
.+++.||+|++.|-+++++.+|+.-..+. +.| .
T Consensus 704 n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~-~~g----------------------------------------------K 736 (881)
T KOG0128|consen 704 NEKRFRGKAYVEFLKPEHAGAAVAFRDSC-FFG----------------------------------------------K 736 (881)
T ss_pred hccccccceeeEeecCCchhhhhhhhhhh-hhh----------------------------------------------h
Confidence 46789999999999999999999544433 322 2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 037126 87 ATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHN 159 (192)
Q Consensus 87 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 159 (192)
..++|.|.|+..+.++++.++..+|.++.+.++. ++|.|+|.|.+..++.+++....+..+.-+.+.+....+
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 3578999999999999999999999999987664 468999999999999999888777777666666666544
No 136
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.80 E-value=3.8e-05 Score=57.19 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=37.8
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 48 (192)
|++| +.++|||||+|.++++|+.|+ .|+|..|.+++|.|....
T Consensus 37 I~~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 37 IIRS---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred EecC---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 4555 566799999999999999999 899999999999998764
No 137
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.77 E-value=9.1e-05 Score=42.36 Aligned_cols=52 Identities=33% Similarity=0.595 Sum_probs=43.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHH
Q 037126 87 ATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVAL 139 (192)
Q Consensus 87 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~ 139 (192)
+.|-|.|.+....+. +...|..||.|..+.+.......+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 356788888766554 5668999999999999877899999999999999985
No 138
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.71 E-value=0.00018 Score=46.65 Aligned_cols=71 Identities=27% Similarity=0.324 Sum_probs=52.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeEEEE-------------EeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeE-
Q 037126 86 NATIFVGALDSDVSDKDLREPFSHFGEILSVK-------------IPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQT- 151 (192)
Q Consensus 86 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~-------------~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~- 151 (192)
..-|.|-+.|.... ..+.+.|++||.|.+.. ...+.....|+|.+..+|.+||. -||..++|..
T Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 45577888888744 55778899999998875 44567889999999999999999 5999998865
Q ss_pred EEEEecC
Q 037126 152 VRLSSGH 158 (192)
Q Consensus 152 l~v~~a~ 158 (192)
+-|.|.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5577764
No 139
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.61 E-value=0.00013 Score=58.03 Aligned_cols=76 Identities=24% Similarity=0.308 Sum_probs=61.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-------------------CceEEEEeCCHHHHHHHHH
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-------------------KGCGFVQFANRKDAEVALQ 140 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-------------------~g~afv~f~~~~~a~~a~~ 140 (192)
+..+.+.++|.+.|||.+-.-+.|.++|+.+|.|..|+|..+ +-+|+|+|...+.|.+|..
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 556688999999999999888999999999999999998752 3569999999999999999
Q ss_pred HhcCCeeCCeEEEEE
Q 037126 141 KLQGTAIGKQTVRLS 155 (192)
Q Consensus 141 ~l~g~~~~g~~l~v~ 155 (192)
.++...-+-.-|++.
T Consensus 305 ~~~~e~~wr~glkvk 319 (484)
T KOG1855|consen 305 LLNPEQNWRMGLKVK 319 (484)
T ss_pred hhchhhhhhhcchhh
Confidence 876554443333333
No 140
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.57 E-value=0.0001 Score=57.38 Aligned_cols=81 Identities=26% Similarity=0.347 Sum_probs=69.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEE--------EEEeC------CCceEEEEeCCHHHHHHHHHHhcCCee
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILS--------VKIPV------GKGCGFVQFANRKDAEVALQKLQGTAI 147 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~--------~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~ 147 (192)
......++||.+||..+++++|.++|.++|.|.. |.+.+ .++.|.|+|.+...|+.|+.-+++..+
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 3667789999999999999999999999987743 33333 478999999999999999999999999
Q ss_pred CCeEEEEEecCCCCC
Q 037126 148 GKQTVRLSSGHNPGN 162 (192)
Q Consensus 148 ~g~~l~v~~a~~~~~ 162 (192)
.+++|+|.+|.....
T Consensus 142 ~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTG 156 (351)
T ss_pred cCCCchhhhhhhccC
Confidence 999999999975543
No 141
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.55 E-value=0.00026 Score=53.87 Aligned_cols=59 Identities=22% Similarity=0.244 Sum_probs=50.0
Q ss_pred HHHHHHHhccCCCeEEEEEeCC------C-ceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 100 DKDLREPFSHFGEILSVKIPVG------K-GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 100 ~~~l~~~f~~~g~i~~~~~~~~------~-g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
++++.+.+.+||.|..|.|... . --.||+|+..++|.+|+-.|||++|+|+.+.-.|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 3667788999999999877641 2 347999999999999999999999999998887764
No 142
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.54 E-value=0.0004 Score=51.86 Aligned_cols=99 Identities=22% Similarity=0.295 Sum_probs=77.0
Q ss_pred HHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHH
Q 037126 23 NERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNATIFVGALDSDVSDKD 102 (192)
Q Consensus 23 ~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~ 102 (192)
.-|+.|-..|+++...|+.++|.++.. ..|||.||...++.+.
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~-------------------------------------a~l~V~nl~~~~sndl 47 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH-------------------------------------AELYVVNLMQGASNDL 47 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc-------------------------------------ceEEEEecchhhhhHH
Confidence 346778888999999999999999742 4699999999999999
Q ss_pred HHHHhccCCCeEEEE-EeC----CCceEEEEeCCHHHHHHHHHHhcCCe----eCCeEEEEEecC
Q 037126 103 LREPFSHFGEILSVK-IPV----GKGCGFVQFANRKDAEVALQKLQGTA----IGKQTVRLSSGH 158 (192)
Q Consensus 103 l~~~f~~~g~i~~~~-~~~----~~g~afv~f~~~~~a~~a~~~l~g~~----~~g~~l~v~~a~ 158 (192)
+.+.|+.||.|..-. ++. ..+-++|.|...-.|.+|+..+.-.- ..+++.-|....
T Consensus 48 l~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~e 112 (275)
T KOG0115|consen 48 LEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPME 112 (275)
T ss_pred HHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhh
Confidence 999999999996643 333 24678999999999999998873332 235555555543
No 143
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.45 E-value=0.0005 Score=58.07 Aligned_cols=72 Identities=24% Similarity=0.303 Sum_probs=59.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeE-EEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSHFGEIL-SVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~-~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
..++|-+.|+|++++-+||.++|..|-.+. +|.+-. ..|.|.|-|++.++|..|...|+++.+..+++.+..
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 345888999999999999999999995443 333332 258899999999999999999999999999988753
No 144
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.39 E-value=9.7e-05 Score=55.05 Aligned_cols=67 Identities=22% Similarity=0.402 Sum_probs=58.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------------C------ceEEEEeCCHHHHHHHHHHhcCCe
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------------K------GCGFVQFANRKDAEVALQKLQGTA 146 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------------~------g~afv~f~~~~~a~~a~~~l~g~~ 146 (192)
..-+||++++|+..+...|+++|+.||.|-+|.+-+. + .-+.|+|.+-..|......||+.+
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999887651 0 237899999999999999999999
Q ss_pred eCCeE
Q 037126 147 IGKQT 151 (192)
Q Consensus 147 ~~g~~ 151 (192)
++|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99874
No 145
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.35 E-value=0.00047 Score=44.48 Aligned_cols=46 Identities=26% Similarity=0.325 Sum_probs=38.7
Q ss_pred cccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeC----CceeEEeecC
Q 037126 3 IIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCS----SRPMSIDVAT 48 (192)
Q Consensus 3 ~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~----g~~i~v~~~~ 48 (192)
..|-.++.+.|||||-|.+++.|....+..+|..|. .+...|.++.
T Consensus 36 PiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAr 85 (97)
T PF04059_consen 36 PIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYAR 85 (97)
T ss_pred eeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhH
Confidence 457778899999999999999999999999999884 4555666664
No 146
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.32 E-value=0.0003 Score=58.15 Aligned_cols=50 Identities=20% Similarity=0.408 Sum_probs=44.5
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
||+.+..+--.++|+||++.+.++|.+||+.|+.+.+.|+-|.|+.++..
T Consensus 436 KVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNE 485 (940)
T KOG4661|consen 436 KVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNE 485 (940)
T ss_pred eeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccC
Confidence 56777777788999999999999999999999999999999999987543
No 147
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.22 E-value=0.0026 Score=43.95 Aligned_cols=57 Identities=23% Similarity=0.431 Sum_probs=46.1
Q ss_pred HHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 037126 101 KDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 101 ~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 160 (192)
.+|.+.|..||.+.=++++. +.-+|+|.+-..|.+|+. ++|.+++|+.|+|+...+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 36677888999988778877 467899999999999998 8999999999999998644
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.19 E-value=0.00049 Score=51.66 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=43.1
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
|..|+.+|+++|||||+|.+.+.++.|+. |++..+.|+.|.|.+....
T Consensus 133 i~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 133 VPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRTN 180 (231)
T ss_pred eeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeeee
Confidence 56788888999999999999999999996 9999999999999876544
No 149
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0021 Score=53.25 Aligned_cols=74 Identities=26% Similarity=0.369 Sum_probs=58.8
Q ss_pred CCCceEEEcCCCCCCC------HHHHHHHhccCCCeEEEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeC-CeE
Q 037126 84 SNNATIFVGALDSDVS------DKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIG-KQT 151 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~------~~~l~~~f~~~g~i~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~-g~~ 151 (192)
.-..+++|.|+|---. ...|..+|+++|++....++. .+|+.|++|.+...|..|++.|||..++ .++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4567888999987322 134567899999998888774 2699999999999999999999999997 556
Q ss_pred EEEEec
Q 037126 152 VRLSSG 157 (192)
Q Consensus 152 l~v~~a 157 (192)
+.+..-
T Consensus 136 f~v~~f 141 (698)
T KOG2314|consen 136 FFVRLF 141 (698)
T ss_pred EEeehh
Confidence 666654
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.09 E-value=0.0011 Score=41.21 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=30.1
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
+.|.|+|.|.+.+.|++|.+.|+|..+.|..|.|.+....
T Consensus 38 ~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 38 SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp -TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 4578999999999999999999999999999999987433
No 151
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=97.00 E-value=0.0036 Score=45.37 Aligned_cols=62 Identities=23% Similarity=0.210 Sum_probs=49.8
Q ss_pred CHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhc--CCeeCCeEEEEEecCCC
Q 037126 99 SDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ--GTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 99 ~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--g~~~~g~~l~v~~a~~~ 160 (192)
....|+++|..++.+..+...++.+-..|.|.+.+.|..|...|+ +..+.|..+++.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457889999999999999999999999999999999999999999 99999999999999533
No 152
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.99 E-value=0.00037 Score=52.05 Aligned_cols=58 Identities=22% Similarity=0.363 Sum_probs=48.9
Q ss_pred HHHHHHhc-cCCCeEEEEEeCC-----CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 101 KDLREPFS-HFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 101 ~~l~~~f~-~~g~i~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
+++...|+ +||.|+.+.+-.. .|-++|.|...++|++|+..||+..+.|++|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44555555 8999999866543 5889999999999999999999999999999998874
No 153
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=96.95 E-value=0.00033 Score=51.18 Aligned_cols=99 Identities=27% Similarity=0.343 Sum_probs=73.2
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCCCCc
Q 037126 8 TDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNA 87 (192)
Q Consensus 8 tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (192)
.+..+ ||||.|.++.....|++.+||..+.++++.+.+-......
T Consensus 46 d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~sha---------------------------------- 90 (267)
T KOG4454|consen 46 DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGNSHA---------------------------------- 90 (267)
T ss_pred cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccCCCcc----------------------------------
Confidence 34444 9999999999999999999999999999888764322100
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCe
Q 037126 88 TIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTA 146 (192)
Q Consensus 88 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~ 146 (192)
-|...++++.+...|+.-|.+..+++.. .+.+.|+.+........++....+..
T Consensus 91 -----pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 91 -----PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred -----hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 1334466666777788888887777654 35678899888888888877666553
No 154
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.69 E-value=0.0019 Score=53.28 Aligned_cols=143 Identities=20% Similarity=0.216 Sum_probs=79.3
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCCC
Q 037126 6 SNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESN 85 (192)
Q Consensus 6 ~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (192)
+.|-..+|.+||+|-|..+|+.|+++|++..+.|+.|...... ....... ...+-+....+...+. ....-+
T Consensus 106 r~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~-~~~~~~~--~~~~~~~~~~~p~a~s-----~pgg~~ 177 (549)
T KOG4660|consen 106 RETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGA-RRAMGLQ--SGTSFLNHFGSPLANS-----PPGGWP 177 (549)
T ss_pred hcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcc-cccchhc--ccchhhhhccchhhcC-----CCCCCc
Confidence 4566788999999999999999999999999999999821111 1111000 0000000000000000 001111
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC-CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 037126 86 NATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHN 159 (192)
Q Consensus 86 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 159 (192)
...+ ++.|++..+..-++..++.+|.+.. +-.. -...-+++|.+..++..++... |..+.+....+.+..+
T Consensus 178 ~~~~-~g~l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 178 RGQL-FGMLSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred CCcc-eeeeccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 1222 3447777777555666667777655 3222 1235677777777775555422 5566666666666654
No 155
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.69 E-value=0.0028 Score=50.27 Aligned_cols=69 Identities=16% Similarity=0.312 Sum_probs=57.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC---------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 88 TIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG---------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 88 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~---------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
.|-|.||.+.++.++++.+|...|.|..+.+++. .-.|||.|.+...+..|.- |..+.+-|+.|.|-.+
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 8899999999999999999999999999998872 3679999999999988865 5666666666666554
No 156
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.68 E-value=0.0023 Score=53.26 Aligned_cols=79 Identities=10% Similarity=0.119 Sum_probs=65.5
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhcc-CCCeEEEEEeCC-CceEEEEeCCHHHHHHHHHHhcCCee---CCeEEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSH-FGEILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGTAI---GKQTVRL 154 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~-~g~i~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~~---~g~~l~v 154 (192)
+.....++.|||.||-.-+|...|+.+++. .|.|... |+.. +..|||.|.+.++|.....+|||..- +.+.|.+
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 345677899999999999999999999995 5556666 6543 67899999999999999999999964 5778999
Q ss_pred EecCC
Q 037126 155 SSGHN 159 (192)
Q Consensus 155 ~~a~~ 159 (192)
.|+..
T Consensus 517 df~~~ 521 (718)
T KOG2416|consen 517 DFVRA 521 (718)
T ss_pred eecch
Confidence 99853
No 157
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.57 E-value=0.0018 Score=51.82 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=60.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCC-eeCCeEEEEEecCCCCC
Q 037126 87 ATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT-AIGKQTVRLSSGHNPGN 162 (192)
Q Consensus 87 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~-~~~g~~l~v~~a~~~~~ 162 (192)
+.+|++||.+.++..+|+.+|........-.++...|++||.+.+..+|.+|++.++|. ++.|..+++.+..++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 35899999999999999999976521122233334599999999999999999999988 57799999998865443
No 158
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.53 E-value=0.022 Score=33.47 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=44.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccC---CCeEEEEEeCCCceEEEEeCCHHHHHHHHHHh
Q 037126 86 NATIFVGALDSDVSDKDLREPFSHF---GEILSVKIPVGKGCGFVQFANRKDAEVALQKL 142 (192)
Q Consensus 86 ~~~l~v~~lp~~~~~~~l~~~f~~~---g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l 142 (192)
...|+|.|+.. .+.++|..+|..| ....++.++.+. .|-|.|.+.+.|.+||..|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-cEEEEECCHHHHHHHHHcC
Confidence 46799999966 5567799999887 246789999874 4889999999999999764
No 159
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.52 E-value=0.026 Score=35.11 Aligned_cols=55 Identities=25% Similarity=0.421 Sum_probs=42.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhc
Q 037126 86 NATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 143 (192)
Q Consensus 86 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 143 (192)
.+..||. +|..+-..||.++|++||.| .|.++.+ ..|||...+.+.+..++..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d-TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND-TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT-TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC-CcEEEEeecHHHHHHHHHHhc
Confidence 4566666 99999999999999999975 4556665 569999999999999998875
No 160
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.40 E-value=0.018 Score=47.32 Aligned_cols=59 Identities=25% Similarity=0.536 Sum_probs=47.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEe---------CCCc---eEEEEeCCHHHHHHHHHHh
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIP---------VGKG---CGFVQFANRKDAEVALQKL 142 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~---------~~~g---~afv~f~~~~~a~~a~~~l 142 (192)
..-.+.+||++||++++|+.|...|..||.+ .+.+. +.+| ++|+.|+++.....-+...
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 4557899999999999999999999999964 33444 1356 9999999999887766554
No 161
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.27 E-value=0.006 Score=47.78 Aligned_cols=69 Identities=20% Similarity=0.283 Sum_probs=56.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCC--CeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeE
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFG--EILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQT 151 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~ 151 (192)
....-++||+||-+.+++++|.+.+...| ++.+++++. ++|+|+|...+.....+.+..|-.+.+.|+.
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 34456889999999999999998887766 556666653 5799999999999999999999888887764
No 162
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=96.01 E-value=0.009 Score=51.38 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=40.1
Q ss_pred CCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 9 DRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 9 g~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
..++|||||.+....+|++|+.+|++..+.++.|+|.|+..+..
T Consensus 454 i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 454 IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 35899999999999999999999999999999999999876643
No 163
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.94 E-value=0.063 Score=36.92 Aligned_cols=75 Identities=25% Similarity=0.255 Sum_probs=55.7
Q ss_pred CCCCCceEEEcCCCCCCC----HHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 82 GESNNATIFVGALDSDVS----DKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~----~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
..++-.+|.|.=|..... -..+...++.||.|.++.+. ++..|.|.|.+...|=+|+.+++. ...|..++++|.
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 355667777765555543 23445567889999988544 567899999999999999999887 456778888886
Q ss_pred C
Q 037126 158 H 158 (192)
Q Consensus 158 ~ 158 (192)
.
T Consensus 160 q 160 (166)
T PF15023_consen 160 Q 160 (166)
T ss_pred c
Confidence 4
No 164
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.91 E-value=0.011 Score=46.30 Aligned_cols=39 Identities=23% Similarity=0.346 Sum_probs=33.4
Q ss_pred cceEEEEEecCHHHHHHHHHHh-cCceeCCceeEEeecCC
Q 037126 11 TKGYGFVRFGDENERSRAMIEM-NGVYCSSRPMSIDVATP 49 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l-~~~~~~g~~i~v~~~~~ 49 (192)
.+|+|||+|.+.+.|+.|.+.+ +...+.|++|.|.|..+
T Consensus 263 ~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 263 RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 4679999999999999988764 44558999999999877
No 165
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.90 E-value=0.013 Score=47.70 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=64.7
Q ss_pred CCCCceEEEcCCCCCC-CHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 037126 83 ESNNATIFVGALDSDV-SDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPG 161 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~-~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 161 (192)
..+.+.+-+.-.|+.. +..+|...|.+||.|..|.+-..-..|.|+|.+..+|-.|-. .++..++++.|+|.|-++..
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 3445555566666664 468899999999999999988877779999999999987765 68999999999999988644
Q ss_pred CC
Q 037126 162 NK 163 (192)
Q Consensus 162 ~~ 163 (192)
..
T Consensus 448 ~t 449 (526)
T KOG2135|consen 448 VT 449 (526)
T ss_pred cc
Confidence 33
No 166
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=95.84 E-value=0.017 Score=43.66 Aligned_cols=46 Identities=30% Similarity=0.515 Sum_probs=41.2
Q ss_pred cCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 5 DSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 5 d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
|+ .|++.|.|-|.|...+||+.|++.++|..+.|+++.+....+..
T Consensus 118 ~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~ 163 (243)
T KOG0533|consen 118 DR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPS 163 (243)
T ss_pred CC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCcc
Confidence 44 79999999999999999999999999999999999998765543
No 167
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.67 E-value=0.00029 Score=60.62 Aligned_cols=114 Identities=21% Similarity=0.235 Sum_probs=81.3
Q ss_pred EEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCCCCceEEEcC
Q 037126 14 YGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNATIFVGA 93 (192)
Q Consensus 14 ~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~ 93 (192)
++++++....+++.|. ...+..+.++.+.|..+.++..... ....+.......++|+.|
T Consensus 616 ~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~ad~~~~~~~--------------------~kvs~n~~R~~~~~fvsn 674 (881)
T KOG0128|consen 616 QQQKVQSKHGSAESAT-VPAGGALANRSAAVGLADAEEKEEN--------------------FKVSPNEIRDLIKIFVSN 674 (881)
T ss_pred hhhhhhccccchhhcc-cccccccCCccccCCCCCchhhhhc--------------------cCcCchHHHHHHHHHHhh
Confidence 6778888888888877 5566667777777766654431110 011122234567889999
Q ss_pred CCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeC
Q 037126 94 LDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIG 148 (192)
Q Consensus 94 lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~ 148 (192)
|+..+.+.+|...|..+|.+..+++.- -+|.|+++|...+.+.+|+....++.++
T Consensus 675 l~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 675 LSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred cchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 999999999999999998877765541 2699999999999999998866555444
No 168
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.52 E-value=0.0091 Score=44.81 Aligned_cols=46 Identities=22% Similarity=0.481 Sum_probs=39.2
Q ss_pred cccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecC
Q 037126 3 IIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48 (192)
Q Consensus 3 ~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 48 (192)
|.|-....-.|-++|.|..+++|++|++.||+.-+.|++|..+++-
T Consensus 101 Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 101 VCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred hhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3444444667899999999999999999999999999999998864
No 169
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.36 E-value=0.011 Score=46.35 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=45.8
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
+|.+|+.|++.+|-|.|+|.|...|..|+.-+++..+.+..|+|..+....
T Consensus 105 ~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 105 KIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERRT 155 (351)
T ss_pred hccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhhcc
Confidence 367889999999999999999999999999999999999999998765443
No 170
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.29 E-value=0.0045 Score=53.90 Aligned_cols=75 Identities=28% Similarity=0.445 Sum_probs=65.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-----CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
...+++|+++||+..+++.+|+..|..+|.+.+|.|-.. -.++||.|.+...+..|+..+.+..|....+++.+.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 466799999999999999999999999999999988653 367999999999999999999999887666666666
No 171
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.14 E-value=0.42 Score=31.63 Aligned_cols=72 Identities=11% Similarity=0.097 Sum_probs=51.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccC-CCeEEEEEeCC----CceEEEEeCCHHHHHHHHHHhcCCeeC---CeEEEEEec
Q 037126 86 NATIFVGALDSDVSDKDLREPFSHF-GEILSVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAIG---KQTVRLSSG 157 (192)
Q Consensus 86 ~~~l~v~~lp~~~~~~~l~~~f~~~-g~i~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~---g~~l~v~~a 157 (192)
...+.+...|...+-++|..+.+.+ ..|..++++++ +=++++.|.+...|..=...+||+.++ ...++|-|.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV 92 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFV 92 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEE
Confidence 4444455555556666676655555 46778888874 458999999999999999999999875 334555554
No 172
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.06 E-value=0.021 Score=49.70 Aligned_cols=75 Identities=19% Similarity=0.205 Sum_probs=62.4
Q ss_pred EEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCee--CCeEEEEEecCCCCCCC
Q 037126 90 FVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI--GKQTVRLSSGHNPGNKQ 164 (192)
Q Consensus 90 ~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a~~~~~~~ 164 (192)
++.|.+-..+-.-|-.+|+.||.+......++-.+|.|+|...+.|..|+.+|+|.++ .|.+.+|.+|+.-...+
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~e 378 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYE 378 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccccc
Confidence 3344444556677889999999999999889999999999999999999999999976 48899999997554443
No 173
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.01 E-value=0.0087 Score=46.63 Aligned_cols=77 Identities=17% Similarity=0.330 Sum_probs=60.0
Q ss_pred CCCCceEEEcCCCCCCC-HHHHH--HHhccCCCeEEEEEeCCC---------ceEEEEeCCHHHHHHHHHHhcCCeeCCe
Q 037126 83 ESNNATIFVGALDSDVS-DKDLR--EPFSHFGEILSVKIPVGK---------GCGFVQFANRKDAEVALQKLQGTAIGKQ 150 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~-~~~l~--~~f~~~g~i~~~~~~~~~---------g~afv~f~~~~~a~~a~~~l~g~~~~g~ 150 (192)
....+-+|+-+|+.... +..|+ +.|++||.|..+.+..+. -.++|+|...++|..|+...+|..++|+
T Consensus 74 vVqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~ 153 (327)
T KOG2068|consen 74 VVQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGR 153 (327)
T ss_pred hhhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhh
Confidence 34456677888887654 44443 668899999999877632 3489999999999999999999999999
Q ss_pred EEEEEecCC
Q 037126 151 TVRLSSGHN 159 (192)
Q Consensus 151 ~l~v~~a~~ 159 (192)
.++..+...
T Consensus 154 ~lka~~gtt 162 (327)
T KOG2068|consen 154 ALKASLGTT 162 (327)
T ss_pred hhHHhhCCC
Confidence 888877753
No 174
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.86 E-value=0.054 Score=45.22 Aligned_cols=41 Identities=27% Similarity=0.465 Sum_probs=33.4
Q ss_pred ccCCCCCcceEEEEEecCHHHHHHHHHHhcCcee-CCceeEEe
Q 037126 4 IDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYC-SSRPMSID 45 (192)
Q Consensus 4 ~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~-~g~~i~v~ 45 (192)
.|+.+ .++||.|++|++..+|+.|++.|||..+ +.++..|.
T Consensus 98 ~~e~g-gtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~ 139 (698)
T KOG2314|consen 98 IDEEG-GTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVR 139 (698)
T ss_pred cCccC-CeeeEEEEEecChhhHHHHHHhcccceecccceEEee
Confidence 35544 4999999999999999999999999887 44455554
No 175
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.79 E-value=0.039 Score=43.22 Aligned_cols=33 Identities=15% Similarity=0.456 Sum_probs=31.1
Q ss_pred EEEecCHHHHHHHHHHhcCceeCCceeEEeecC
Q 037126 16 FVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48 (192)
Q Consensus 16 fV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 48 (192)
||+|.+.+||.+||...+|..+.||.|+..|..
T Consensus 169 YITy~~kedAarcIa~vDgs~~DGr~lkatYGT 201 (480)
T COG5175 169 YITYSTKEDAARCIAEVDGSLLDGRVLKATYGT 201 (480)
T ss_pred EEEecchHHHHHHHHHhccccccCceEeeecCc
Confidence 999999999999999999999999999998753
No 176
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.70 E-value=0.064 Score=31.98 Aligned_cols=33 Identities=21% Similarity=0.481 Sum_probs=28.1
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCceeCCceeEE
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSI 44 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v 44 (192)
..|| ||.|.+..+|+++....+|..+.+-.+.+
T Consensus 33 ~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 33 RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4566 99999999999999999999887766654
No 177
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.65 E-value=0.18 Score=42.22 Aligned_cols=66 Identities=11% Similarity=0.248 Sum_probs=50.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcc--CCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCC--eeCCeEE
Q 037126 86 NATIFVGALDSDVSDKDLREPFSH--FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT--AIGKQTV 152 (192)
Q Consensus 86 ~~~l~v~~lp~~~~~~~l~~~f~~--~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~--~~~g~~l 152 (192)
.|.+.++-+|..+.+++++.+|.. +-.+..|.+...-+ =||+|++..+|+.|.+.|... .|.|++|
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-WyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-WYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-eEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 456667899999999999999964 66788887766533 689999999999998877322 4455543
No 178
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.64 E-value=0.023 Score=45.20 Aligned_cols=139 Identities=17% Similarity=0.113 Sum_probs=87.4
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccch--hhhcchhhhhc----cCC------------CC
Q 037126 10 RTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGY--QQQCSSQALVL----AGG------------PA 71 (192)
Q Consensus 10 ~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~--~~~~~~~~~~~----~~~------------~~ 71 (192)
.....|||-|.+...+.-|. .|.++.+-++.|.|-+.-....... ........... .++ ..
T Consensus 50 v~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~ 128 (479)
T KOG4676|consen 50 VISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHS 128 (479)
T ss_pred ceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCC
Confidence 34567999999999999998 7888888888888776433211110 00000000000 000 00
Q ss_pred C------CCCCCCCC--CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC--CCceEEEEeCCHHHHHHHHHH
Q 037126 72 S------NGTRVQGS--DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV--GKGCGFVQFANRKDAEVALQK 141 (192)
Q Consensus 72 ~------~~~~~~~~--~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~--~~g~afv~f~~~~~a~~a~~~ 141 (192)
. ....++.+ ....-.++++|.+|+..+...++.+.|..+|.+....+.- ...+|-++|........|+.
T Consensus 129 p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr- 207 (479)
T KOG4676|consen 129 PNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR- 207 (479)
T ss_pred ccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-
Confidence 0 00000000 0012237799999999999999999999999998887754 34667799998888888887
Q ss_pred hcCCeeCCe
Q 037126 142 LQGTAIGKQ 150 (192)
Q Consensus 142 l~g~~~~g~ 150 (192)
.+|..+.-+
T Consensus 208 ~~gre~k~q 216 (479)
T KOG4676|consen 208 SHGRERKRQ 216 (479)
T ss_pred hcchhhhhh
Confidence 577777633
No 179
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.51 E-value=0.33 Score=37.62 Aligned_cols=71 Identities=20% Similarity=0.276 Sum_probs=54.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeE-EEEEecCC
Q 037126 87 ATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQT-VRLSSGHN 159 (192)
Q Consensus 87 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~-l~v~~a~~ 159 (192)
.=+.|-++|..-. .-+..+|++||.|.+.........-.|.|....+|++||.+ +|+.|+|.. |-|..+..
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCC
Confidence 3445567776543 34678899999998876665567889999999999999984 999998775 56666543
No 180
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.17 E-value=0.08 Score=33.49 Aligned_cols=70 Identities=16% Similarity=0.266 Sum_probs=44.0
Q ss_pred EEEEecCHHHHHHHHHHh-cCceeCCceeEEee--cCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCCCCceEEE
Q 037126 15 GFVRFGDENERSRAMIEM-NGVYCSSRPMSIDV--ATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNATIFV 91 (192)
Q Consensus 15 afV~f~~~~~A~~A~~~l-~~~~~~g~~i~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 91 (192)
|+|+|.+++-|++.++.- +-..+.+..+.|.. .........+ -......+++.|
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~q-----------------------v~~~vs~rtVlv 57 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQ-----------------------VFSGVSKRTVLV 57 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEE-----------------------EEEcccCCEEEE
Confidence 689999999999988532 22335555555543 2211111000 112355688999
Q ss_pred cCCCCCCCHHHHHHHh
Q 037126 92 GALDSDVSDKDLREPF 107 (192)
Q Consensus 92 ~~lp~~~~~~~l~~~f 107 (192)
.|+|...++++|++.+
T Consensus 58 sgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 58 SGIPDVLDEEELRDKL 73 (88)
T ss_pred eCCCCCCChhhheeeE
Confidence 9999999999988654
No 181
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.48 E-value=0.14 Score=36.87 Aligned_cols=74 Identities=11% Similarity=0.211 Sum_probs=49.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcc-CCCe---EEEEEeCC--------CceEEEEeCCHHHHHHHHHHhcCCeeC---C
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSH-FGEI---LSVKIPVG--------KGCGFVQFANRKDAEVALQKLQGTAIG---K 149 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~-~g~i---~~~~~~~~--------~g~afv~f~~~~~a~~a~~~l~g~~~~---g 149 (192)
....|.|++||+..+++++.+.++. ++.- ..+....+ -.-|+|.|.+.++...-...++|..+- |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3458999999999999998887776 5554 34432211 256999999999999999999998763 2
Q ss_pred e--EEEEEecC
Q 037126 150 Q--TVRLSSGH 158 (192)
Q Consensus 150 ~--~l~v~~a~ 158 (192)
. ...|.+|-
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 2 56677774
No 182
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=93.35 E-value=0.19 Score=35.95 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=56.9
Q ss_pred eEEEcCCCCCCCH-----HHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCe-EEEEEecCCC
Q 037126 88 TIFVGALDSDVSD-----KDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQ-TVRLSSGHNP 160 (192)
Q Consensus 88 ~l~v~~lp~~~~~-----~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~-~l~v~~a~~~ 160 (192)
.+.+.+++..+.. .....+|.+|-+....++.++.+...|.|.+...|..|...++++.+.|. .++..++.+.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 3445566555332 33456777777777778888889999999999999999999999999988 8999998644
No 183
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=92.83 E-value=0.22 Score=34.53 Aligned_cols=35 Identities=26% Similarity=0.491 Sum_probs=30.1
Q ss_pred EEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCC
Q 037126 14 YGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP 49 (192)
Q Consensus 14 ~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~ 49 (192)
.-+|+|.+.+.|-+|+ .++|..+.|+.|+|..-.+
T Consensus 72 ~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 72 TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE---
T ss_pred eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCc
Confidence 4689999999999999 7999999999999987544
No 184
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.05 E-value=0.65 Score=37.98 Aligned_cols=72 Identities=15% Similarity=0.253 Sum_probs=59.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeCC----CceEEEEeCCHHHHHHHHHHhcCCeeCC---eEEEEEec
Q 037126 86 NATIFVGALDSDVSDKDLREPFSHFG-EILSVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAIGK---QTVRLSSG 157 (192)
Q Consensus 86 ~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~g---~~l~v~~a 157 (192)
+..|+|-.+|..++-.||..++..+- .|..++++++ +-+++|.|.+..+|..-...+||..|.. -..++-|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~V 153 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLYV 153 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEEE
Confidence 78899999999999999999988764 6788888874 4579999999999999999999998753 24444444
No 185
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.06 E-value=0.27 Score=37.91 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=31.4
Q ss_pred EEEEEecCHHHHHHHHHHhcCceeCCceeEEeecC
Q 037126 14 YGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48 (192)
Q Consensus 14 ~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 48 (192)
.-||+|...++|.+|+-.|||..|+|+.+...+..
T Consensus 331 RiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 331 RIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred eeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 46999999999999999999999999998877653
No 186
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=90.84 E-value=1 Score=34.70 Aligned_cols=50 Identities=24% Similarity=0.316 Sum_probs=42.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeCCCceEEEEeCCH
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFG-EILSVKIPVGKGCGFVQFANR 132 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~g~afv~f~~~ 132 (192)
......|+++||+.++.-.+|...+.+-+ ..+++.+--+++-||+.|.+.
T Consensus 327 a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 327 AGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred CccccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCc
Confidence 44456799999999999999999998765 568888888899999999664
No 187
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=90.59 E-value=0.25 Score=42.53 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=35.6
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecC
Q 037126 10 RTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48 (192)
Q Consensus 10 ~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 48 (192)
+-+-||||.|.+..||++|++.|+|..+.+..+++.|.+
T Consensus 217 r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 217 RERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGK 255 (877)
T ss_pred cccccceeeehhhhhHHHHHHHhcceeeeeeeeeecccc
Confidence 455689999999999999999999999999999999874
No 188
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=90.56 E-value=0.12 Score=40.15 Aligned_cols=50 Identities=20% Similarity=0.486 Sum_probs=43.3
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
|+.-++.++..+|||+|.|....++..++.. +...+.++++.+.+..+..
T Consensus 216 r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 216 RLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred ccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 3456778999999999999999999999977 8888999999999887653
No 189
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.14 E-value=2.7 Score=35.69 Aligned_cols=75 Identities=27% Similarity=0.304 Sum_probs=62.3
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhccC----CCeEEEEEeCC------------------------------------
Q 037126 83 ESNNATIFVGALDSD-VSDKDLREPFSHF----GEILSVKIPVG------------------------------------ 121 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~-~~~~~l~~~f~~~----g~i~~~~~~~~------------------------------------ 121 (192)
...++.|.|-||.|. +.-.+|.-+|..| |.|.+|.|+++
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456788999999996 7788998888766 68999998861
Q ss_pred --------C---------ceEEEEeCCHHHHHHHHHHhcCCeeC--CeEEEEEec
Q 037126 122 --------K---------GCGFVQFANRKDAEVALQKLQGTAIG--KQTVRLSSG 157 (192)
Q Consensus 122 --------~---------g~afv~f~~~~~a~~a~~~l~g~~~~--g~~l~v~~a 157 (192)
| =+|.|+|.+...|......+.|.++. +..|.++|.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 0 15899999999999999999999996 667888886
No 190
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=89.20 E-value=0.57 Score=37.08 Aligned_cols=43 Identities=9% Similarity=0.196 Sum_probs=37.4
Q ss_pred cccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEe
Q 037126 3 IIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSID 45 (192)
Q Consensus 3 ~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 45 (192)
.-++.+|+|+|||+|...+.....+-|+.|-...+.|+.-.|-
T Consensus 115 FENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 115 FENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred hhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3456789999999999999999999999999999999865553
No 191
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=88.97 E-value=0.72 Score=30.53 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=29.9
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCS 38 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~ 38 (192)
||++|. ..++=.+.+.|.+.++|......+||..+.
T Consensus 45 riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 45 RIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 466663 357778999999999999999999998863
No 192
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.69 E-value=0.72 Score=28.05 Aligned_cols=34 Identities=18% Similarity=0.399 Sum_probs=20.0
Q ss_pred eEEEEEecCHHHHHHHHHHhcCceeCCceeEEeec
Q 037126 13 GYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVA 47 (192)
Q Consensus 13 g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 47 (192)
-|+||+-... .|+.+++.|++..+.|+++.|+.+
T Consensus 41 ~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 41 NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4678876554 889999999999999999999863
No 193
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=87.99 E-value=0.54 Score=38.57 Aligned_cols=40 Identities=18% Similarity=0.408 Sum_probs=33.2
Q ss_pred CCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCC
Q 037126 9 DRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP 49 (192)
Q Consensus 9 g~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~ 49 (192)
+.+.+||||+|.+.++++.|+++ +-..+.++++.|+.-.+
T Consensus 327 ~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 327 GKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred CCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 44449999999999999999965 47778999999987543
No 194
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=87.19 E-value=0.82 Score=38.77 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=31.5
Q ss_pred ceEEEEEecCHHHHHHHHHHhcCcee---CCceeEEeec
Q 037126 12 KGYGFVRFGDENERSRAMIEMNGVYC---SSRPMSIDVA 47 (192)
Q Consensus 12 ~g~afV~f~~~~~A~~A~~~l~~~~~---~g~~i~v~~~ 47 (192)
+-.|||.|.+.++|..-..+|||..| .++.|.+.|.
T Consensus 481 KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 481 KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred hcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 56799999999999999999999998 6677877764
No 195
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=86.27 E-value=5.2 Score=23.83 Aligned_cols=55 Identities=15% Similarity=0.279 Sum_probs=42.7
Q ss_pred CCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 97 DVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 97 ~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
.++-++++..+..|+ ...|. .++..=+|.|.+..+|.++....+|+.+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~--~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIR--DDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEE--ecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 356678999999985 44444 34444689999999999999999999888777654
No 196
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=84.65 E-value=1.7 Score=26.44 Aligned_cols=58 Identities=22% Similarity=0.313 Sum_probs=32.7
Q ss_pred CCCHHHHHHHhccCCC-----eEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 97 DVSDKDLREPFSHFGE-----ILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 97 ~~~~~~l~~~f~~~g~-----i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
.++..+|..++...+. |-.+.+.. .++||+-... .|..++..|++..+.|+++.|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~--~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFD--NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-S--S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEee--eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4677778777766543 44555555 6678877654 678888999999999999999865
No 197
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=83.65 E-value=2.1 Score=27.85 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=28.0
Q ss_pred ceEEEEEecCHHHHHHHHHHhcCceeCCceeE-Eeec
Q 037126 12 KGYGFVRFGDENERSRAMIEMNGVYCSSRPMS-IDVA 47 (192)
Q Consensus 12 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~-v~~~ 47 (192)
...-.|+|.++.+|.+|| ..||..+.|..+- |.+.
T Consensus 54 ~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 54 GNWIHITYDNPLSAQRAL-QKNGTIFSGSLMVGVKPC 89 (100)
T ss_dssp TTEEEEEESSHHHHHHHH-TTTTEEETTCEEEEEEE-
T ss_pred CCEEEEECCCHHHHHHHH-HhCCeEEcCcEEEEEEEc
Confidence 346789999999999999 7899999887654 4444
No 198
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=80.97 E-value=2.6 Score=30.66 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=29.8
Q ss_pred cceEEEEEecCHHHHHHHHHHhc--CceeCCceeEEeecCC
Q 037126 11 TKGYGFVRFGDENERSRAMIEMN--GVYCSSRPMSIDVATP 49 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~--~~~~~g~~i~v~~~~~ 49 (192)
+-+...|.|.+.++|.+|...|+ +..+.|..+++.++..
T Consensus 30 sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 30 SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 34567999999999999999999 9999999999988743
No 199
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=80.78 E-value=1.1 Score=38.45 Aligned_cols=72 Identities=22% Similarity=0.194 Sum_probs=60.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
.++..++||+|+...+..+-+..++..+|.|..+.... ++|+.|..+.....|+..++-..++|..+.+...
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 45567889999999999999999999999887775554 8999999999999999999988898887666553
No 200
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=77.74 E-value=2.8 Score=27.48 Aligned_cols=33 Identities=18% Similarity=0.443 Sum_probs=20.8
Q ss_pred EEEEEecCHHHHHHHHHHhcCc-----eeCCceeEEee
Q 037126 14 YGFVRFGDENERSRAMIEMNGV-----YCSSRPMSIDV 46 (192)
Q Consensus 14 ~afV~f~~~~~A~~A~~~l~~~-----~~~g~~i~v~~ 46 (192)
.|+|.|.+++.|+.|++.+... .+.+..+.+..
T Consensus 39 ~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 39 EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 5899999999999999876554 35555555543
No 201
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.65 E-value=8.7 Score=31.28 Aligned_cols=60 Identities=13% Similarity=0.162 Sum_probs=48.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeCCCceEEEEeCCHHHHHHHHHH
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFG-EILSVKIPVGKGCGFVQFANRKDAEVALQK 141 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~g~afv~f~~~~~a~~a~~~ 141 (192)
.+..-.++|=|.++|...-.+||...|+.|+ .-..|.|+.+. .||-.|.+...|..||..
T Consensus 386 ~e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 386 RESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-HALAVFSSVNRAAEALTL 446 (528)
T ss_pred CcccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-eeEEeecchHHHHHHhhc
Confidence 3344567888999999988889999999996 45677787764 499999999999999874
No 202
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=75.33 E-value=0.97 Score=31.37 Aligned_cols=83 Identities=16% Similarity=0.132 Sum_probs=55.5
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCCCCce--
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNAT-- 88 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 88 (192)
..++..++|.+++++..+++ .....+.|..+.+....+.... .........
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~--------------------------~~~~~~~~~vW 106 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNP--------------------------SEVKFEHIPVW 106 (153)
T ss_pred CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccc--------------------------cccceeccchh
Confidence 45788899999999998883 4445567777777765533211 111111222
Q ss_pred EEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeC
Q 037126 89 IFVGALDSD-VSDKDLREPFSHFGEILSVKIPV 120 (192)
Q Consensus 89 l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~ 120 (192)
+.+.|||.. .+++.+..+.+.+|.+..+....
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 446799987 56778888888999999887654
No 203
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=74.52 E-value=5.8 Score=30.86 Aligned_cols=75 Identities=16% Similarity=0.231 Sum_probs=57.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCC-------------ceEEEEeCCHHHHHH----HHHHhcCC-
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGK-------------GCGFVQFANRKDAEV----ALQKLQGT- 145 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-------------g~afv~f~~~~~a~~----a~~~l~g~- 145 (192)
-..|.|.+.|+...++-+.+...|.+||.|+++.++.+. ....+.|-+.+.|.. .++.|.-.
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 446778889999999999999999999999999998754 668899988877654 23333322
Q ss_pred -eeCCeEEEEEecC
Q 037126 146 -AIGKQTVRLSSGH 158 (192)
Q Consensus 146 -~~~g~~l~v~~a~ 158 (192)
.+....|.+.|..
T Consensus 93 ~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 93 TKLKSESLTLSFVS 106 (309)
T ss_pred HhcCCcceeEEEEE
Confidence 4667778888875
No 204
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=71.31 E-value=1.4 Score=34.79 Aligned_cols=35 Identities=14% Similarity=0.430 Sum_probs=31.2
Q ss_pred EEEEecCHHHHHHHHHHhcCceeCCceeEEeecCC
Q 037126 15 GFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP 49 (192)
Q Consensus 15 afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~ 49 (192)
++|+|...++|..||..++|+.+.|+.++..+...
T Consensus 128 ~yITy~~~eda~rci~~v~g~~~dg~~lka~~gtt 162 (327)
T KOG2068|consen 128 VYITYEEEEDADRCIDDVDGFVDDGRALKASLGTT 162 (327)
T ss_pred ccccccchHhhhhHHHHhhhHHhhhhhhHHhhCCC
Confidence 79999999999999999999999999987766543
No 205
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=64.70 E-value=22 Score=30.58 Aligned_cols=101 Identities=7% Similarity=0.083 Sum_probs=58.6
Q ss_pred eEEEEEecCHHHHHHHHHHhcCceeCCceeEE-----eecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCCCCc
Q 037126 13 GYGFVRFGDENERSRAMIEMNGVYCSSRPMSI-----DVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNA 87 (192)
Q Consensus 13 g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (192)
--||+++.++..-+-.-+.|+-..+.+-.|.- +++...+-........++.. ..++.....
T Consensus 237 i~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIF--------------lEPEGl~~~ 302 (621)
T COG0445 237 IPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIF--------------LEPEGLDTD 302 (621)
T ss_pred cceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEE--------------ecCCCCCCc
Confidence 35899999999888877777776654443321 11110000000000000000 145567788
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEe
Q 037126 88 TIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQF 129 (192)
Q Consensus 88 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f 129 (192)
.+|+.+|..+..++.=.++....-..+.+.+.+. |+| |+|
T Consensus 303 evY~nGlSTSlP~dVQ~~~irsipGlEna~i~rp-gYA-IEY 342 (621)
T COG0445 303 EVYPNGLSTSLPEDVQEQIIRSIPGLENAEILRP-GYA-IEY 342 (621)
T ss_pred eEecCcccccCCHHHHHHHHHhCcccccceeecc-cee-eee
Confidence 9999999888887766666666666677777664 444 444
No 206
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=62.73 E-value=12 Score=29.62 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=24.1
Q ss_pred EEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 15 GFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 15 afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
|||+|.+..+|+.|.+.+.... ++.+.+..+-.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc
Confidence 7999999999999998655443 344466555433
No 207
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=61.50 E-value=62 Score=26.70 Aligned_cols=41 Identities=34% Similarity=0.422 Sum_probs=30.3
Q ss_pred CCCCCCCceEEEcCCCCC-CCHHHHHHHhccC----CCeEEEEEeC
Q 037126 80 SDGESNNATIFVGALDSD-VSDKDLREPFSHF----GEILSVKIPV 120 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~----g~i~~~~~~~ 120 (192)
++...+...|.|-||.++ +.-.+|.-.|+.| |.+..+.|.+
T Consensus 140 pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 140 PEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred cCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 344566778888899886 6678888887765 6788887775
No 208
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=57.64 E-value=29 Score=28.86 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=29.9
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSS 39 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g 39 (192)
||+||. -.++=..+|.|.+.++|....+.+||..|..
T Consensus 106 rivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 106 RIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred EEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 567753 2456668999999999999999999998744
No 209
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=55.42 E-value=29 Score=20.39 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=15.0
Q ss_pred HHHHHHhccCCCeEEEEEe
Q 037126 101 KDLREPFSHFGEILSVKIP 119 (192)
Q Consensus 101 ~~l~~~f~~~g~i~~~~~~ 119 (192)
.+|+++|+..|+|.-+-+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5789999999998666443
No 210
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=47.03 E-value=11 Score=32.17 Aligned_cols=28 Identities=11% Similarity=0.344 Sum_probs=22.4
Q ss_pred EEEecCHHHHHHHHHHhcCc--eeCCceeE
Q 037126 16 FVRFGDENERSRAMIEMNGV--YCSSRPMS 43 (192)
Q Consensus 16 fV~f~~~~~A~~A~~~l~~~--~~~g~~i~ 43 (192)
||+|.++.||+.|.+.|-.. .|.|++|.
T Consensus 216 yITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 216 YITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred EEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 89999999999999876553 37777763
No 211
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=45.30 E-value=33 Score=27.03 Aligned_cols=41 Identities=32% Similarity=0.550 Sum_probs=29.7
Q ss_pred EEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCCCCCCC
Q 037126 125 GFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQWRG 167 (192)
Q Consensus 125 afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~~~~ 167 (192)
|||+|++..+|..|++.+..... +.+++..|-.+..-.+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP~DI~W~N 41 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEPDDIIWEN 41 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCcccccccc
Confidence 79999999999999997655443 455788886665544433
No 212
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=45.11 E-value=5 Score=30.57 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=25.5
Q ss_pred EEEEecCHHHHHHHHHHhcCceeCCce
Q 037126 15 GFVRFGDENERSRAMIEMNGVYCSSRP 41 (192)
Q Consensus 15 afV~f~~~~~A~~A~~~l~~~~~~g~~ 41 (192)
|+|+|.+...|..+...||+..|+|+.
T Consensus 131 GWvEF~~KrvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 131 GWVEFISKRVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 799999999999999999999999986
No 213
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=41.73 E-value=43 Score=26.42 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=30.7
Q ss_pred cCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCcee-EEee
Q 037126 5 DSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPM-SIDV 46 (192)
Q Consensus 5 d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i-~v~~ 46 (192)
+..++.+--+-+|.|.+..+|++|| ..+|+.|.|..+ -|..
T Consensus 225 khv~~~ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 225 KHVTPSNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKP 266 (350)
T ss_pred eeecCCCCceEEEEecchhHHHHhh-hhcCeeeccceEEeeee
Confidence 3345544457899999999999999 679999888644 3444
No 214
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=40.87 E-value=40 Score=20.15 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=20.7
Q ss_pred eEEEEEecCHHHHHHHHHHhcCcee
Q 037126 13 GYGFVRFGDENERSRAMIEMNGVYC 37 (192)
Q Consensus 13 g~afV~f~~~~~A~~A~~~l~~~~~ 37 (192)
.+.+|.|.+..+|-+|-+.|....+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 4689999999999999987776544
No 215
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=38.51 E-value=7.6 Score=32.97 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=53.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEE
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 152 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l 152 (192)
..+.+++.|+++.++-.+|..++..+--+.++.+... ....+|+|+..-....|+-+|++..+....+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 3578889999999999999999998876676665542 3567899988777888888888887766543
No 216
>PHA01632 hypothetical protein
Probab=37.74 E-value=31 Score=19.67 Aligned_cols=21 Identities=14% Similarity=0.434 Sum_probs=17.0
Q ss_pred EEEcCCCCCCCHHHHHHHhcc
Q 037126 89 IFVGALDSDVSDKDLREPFSH 109 (192)
Q Consensus 89 l~v~~lp~~~~~~~l~~~f~~ 109 (192)
+.|..+|...++++|+.++.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 345789999999999987754
No 217
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=37.51 E-value=19 Score=30.10 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=32.0
Q ss_pred ceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCC
Q 037126 12 KGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP 49 (192)
Q Consensus 12 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~ 49 (192)
.-.|.|+|.+..+|-.|. ..++..|.++.|+|.|..+
T Consensus 409 ~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 409 SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhheeeeeccccccchh-ccccceecCceeEEEEecC
Confidence 446899999999997777 6799999999999999765
No 218
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=35.95 E-value=42 Score=21.76 Aligned_cols=20 Identities=25% Similarity=0.591 Sum_probs=14.1
Q ss_pred CCCcceEEEEEecCHHHHHHH
Q 037126 8 TDRTKGYGFVRFGDENERSRA 28 (192)
Q Consensus 8 tg~s~g~afV~f~~~~~A~~A 28 (192)
.|.+.|||.| |.+.+.|.+.
T Consensus 62 ~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 62 MGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CceEEEEEEE-ECCHHHHHhh
Confidence 3578888876 7777776653
No 219
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=34.76 E-value=83 Score=20.98 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=22.8
Q ss_pred CHHHHHHHhccCCCeEEEEEeC---CCceEEEEeCCH-HHHHHHHH
Q 037126 99 SDKDLREPFSHFGEILSVKIPV---GKGCGFVQFANR-KDAEVALQ 140 (192)
Q Consensus 99 ~~~~l~~~f~~~g~i~~~~~~~---~~g~afv~f~~~-~~a~~a~~ 140 (192)
+..+|.+.|+.|..++-..+.. ..|+++|.|... .-...|++
T Consensus 30 ~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 4478899999997664333332 258999999653 44445554
No 220
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=33.82 E-value=1.2e+02 Score=18.94 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=37.9
Q ss_pred EEEcCCCCCCCHHHHHHHhcc-CC-CeEEEEEe---CCCceEEEEeCCHHHHHHHHHHh
Q 037126 89 IFVGALDSDVSDKDLREPFSH-FG-EILSVKIP---VGKGCGFVQFANRKDAEVALQKL 142 (192)
Q Consensus 89 l~v~~lp~~~~~~~l~~~f~~-~g-~i~~~~~~---~~~g~afv~f~~~~~a~~a~~~l 142 (192)
.|+--++..++..+|.+.++. || .|..+... .+..-|+|.+.....|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 344456889999999888876 55 55666433 23356999999988888775543
No 221
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=29.69 E-value=1e+02 Score=22.47 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=32.4
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcCceeCCc-eeEEeecCCC
Q 037126 10 RTKGYGFVRFGDENERSRAMIEMNGVYCSSR-PMSIDVATPK 50 (192)
Q Consensus 10 ~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~-~i~v~~~~~~ 50 (192)
++.++--|-|.+++.|..|...+++..+.|+ .+..-.+.+.
T Consensus 49 rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 49 RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 3556677899999999999999999999888 6555554433
No 222
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=29.28 E-value=68 Score=19.85 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=21.7
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcCc
Q 037126 10 RTKGYGFVRFGDENERSRAMIEMNGV 35 (192)
Q Consensus 10 ~s~g~afV~f~~~~~A~~A~~~l~~~ 35 (192)
.-+||-||+=.++.+...|++.+-+.
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CCceEEEEEeCCHHHHHHHHhcccce
Confidence 47899999999999999999766554
No 223
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=29.25 E-value=47 Score=25.19 Aligned_cols=34 Identities=12% Similarity=0.287 Sum_probs=28.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEE
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSV 116 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~ 116 (192)
.....++|+-|+|...+++.|.++.++.|-+..+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 3567889999999999999999999988854433
No 224
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=28.90 E-value=1.3e+02 Score=17.78 Aligned_cols=30 Identities=33% Similarity=0.650 Sum_probs=22.6
Q ss_pred HHHHHhcc--CCCeEEEEEeCCCceE-EEEeCC
Q 037126 102 DLREPFSH--FGEILSVKIPVGKGCG-FVQFAN 131 (192)
Q Consensus 102 ~l~~~f~~--~g~i~~~~~~~~~g~a-fv~f~~ 131 (192)
+|.+.+.. .|.|...++..+.|.+ .|+|.+
T Consensus 19 ~l~~~l~~~~~g~I~~fKmtDG~giG~vv~~~n 51 (64)
T PF11061_consen 19 ELVDKLGKNPIGTIKGFKMTDGSGIGVVVEFSN 51 (64)
T ss_pred HHHHHhccCCcEEEEEEEEecCCcEEEEEEecC
Confidence 45555665 8999999999998865 577765
No 225
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=28.19 E-value=43 Score=19.08 Aligned_cols=12 Identities=50% Similarity=0.866 Sum_probs=9.0
Q ss_pred CcceEEEEEecC
Q 037126 10 RTKGYGFVRFGD 21 (192)
Q Consensus 10 ~s~g~afV~f~~ 21 (192)
.++|||||.-.+
T Consensus 6 ~~~GfGFv~~~~ 17 (58)
T PF08206_consen 6 HPKGFGFVIPDD 17 (58)
T ss_dssp -SSS-EEEEECT
T ss_pred EcCCCEEEEECC
Confidence 578999999887
No 226
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=27.78 E-value=66 Score=22.06 Aligned_cols=19 Identities=16% Similarity=0.573 Sum_probs=13.4
Q ss_pred CCCcceEEEEEecCHHHHHH
Q 037126 8 TDRTKGYGFVRFGDENERSR 27 (192)
Q Consensus 8 tg~s~g~afV~f~~~~~A~~ 27 (192)
.|.+.|||.| |.+.+.|..
T Consensus 68 ~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 68 GGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CceEEEEEEE-ECCHHHHHh
Confidence 4578899876 777766654
No 227
>PRK14998 cold shock-like protein CspD; Provisional
Probab=27.62 E-value=35 Score=20.65 Aligned_cols=12 Identities=33% Similarity=0.717 Sum_probs=8.6
Q ss_pred CcceEEEEEecC
Q 037126 10 RTKGYGFVRFGD 21 (192)
Q Consensus 10 ~s~g~afV~f~~ 21 (192)
..+|||||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (73)
T PRK14998 11 NAKGFGFICPEG 22 (73)
T ss_pred CCCceEEEecCC
Confidence 468999995443
No 228
>PF06613 KorB_C: KorB C-terminal beta-barrel domain; InterPro: IPR010575 This domain is found in several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon []. This family is found in conjunction with IPR003115 from INTERPRO.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1IGQ_B 1IGU_A.
Probab=27.53 E-value=43 Score=19.44 Aligned_cols=21 Identities=10% Similarity=0.665 Sum_probs=13.3
Q ss_pred CccccCCCCCcceEEEEEecCH
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDE 22 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~ 22 (192)
||+.++ -..+.|+|+|.|.+.
T Consensus 21 rllLnr-Rps~~G~~WiKyED~ 41 (60)
T PF06613_consen 21 RLLLNR-RPSSEGLAWIKYEDD 41 (60)
T ss_dssp EE-TTB---SSTTEEEEEETTT
T ss_pred hhhhcc-CCCcCCeEEEEEccC
Confidence 355554 246789999999873
No 229
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=27.47 E-value=95 Score=19.80 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=19.3
Q ss_pred cceEEEEEecCHHHHHHHHHHhc
Q 037126 11 TKGYGFVRFGDENERSRAMIEMN 33 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~ 33 (192)
=+.+|.|.|.+.+.+..|.+.|-
T Consensus 50 W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 50 WRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred ceEeEEEECCChHHHHHHHHHHH
Confidence 35789999999999999987654
No 230
>PRK15464 cold shock-like protein CspH; Provisional
Probab=27.06 E-value=33 Score=20.58 Aligned_cols=12 Identities=42% Similarity=0.695 Sum_probs=8.7
Q ss_pred CcceEEEEEecC
Q 037126 10 RTKGYGFVRFGD 21 (192)
Q Consensus 10 ~s~g~afV~f~~ 21 (192)
..+|||||+=.+
T Consensus 14 ~~KGfGFI~~~~ 25 (70)
T PRK15464 14 RKSGKGFIIPSD 25 (70)
T ss_pred CCCCeEEEccCC
Confidence 468999996544
No 231
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=27.02 E-value=59 Score=21.81 Aligned_cols=19 Identities=5% Similarity=0.436 Sum_probs=14.1
Q ss_pred CCCcceEEEEEecCHHHHHH
Q 037126 8 TDRTKGYGFVRFGDENERSR 27 (192)
Q Consensus 8 tg~s~g~afV~f~~~~~A~~ 27 (192)
+|++.|||.| |.+.+.|.+
T Consensus 66 ggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 66 GGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred Ccccceeeee-eehHHHHHh
Confidence 5789999977 777766654
No 232
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=27.00 E-value=38 Score=20.59 Aligned_cols=11 Identities=36% Similarity=0.779 Sum_probs=8.1
Q ss_pred CcceEEEEEec
Q 037126 10 RTKGYGFVRFG 20 (192)
Q Consensus 10 ~s~g~afV~f~ 20 (192)
..+|||||+=.
T Consensus 11 ~~KGfGFI~~~ 21 (74)
T PRK09937 11 NAKGFGFICPE 21 (74)
T ss_pred CCCCeEEEeeC
Confidence 46899999543
No 233
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=26.23 E-value=48 Score=17.13 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=9.9
Q ss_pred CCCCHHHHHHHhccCC
Q 037126 96 SDVSDKDLREPFSHFG 111 (192)
Q Consensus 96 ~~~~~~~l~~~f~~~g 111 (192)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3578899999998764
No 234
>PF09341 Pcc1: Transcription factor Pcc1; InterPro: IPR015419 Pcc1 is a proposed transcription factor involved in the expression of genes regulated by alpha-factor and galactose; component of the EKC/KEOPS protein complex with Kae1, Gon7, Bud32, and Cgi121; related to human cancer-testis antigens [].; PDB: 2BNR_C 2P5W_C 3KLA_C 2F54_C 2P5E_C 2F53_C 3ENO_E 3ENC_B.
Probab=26.22 E-value=1.2e+02 Score=18.17 Aligned_cols=23 Identities=9% Similarity=-0.065 Sum_probs=16.7
Q ss_pred ceEEEEEecCHHHHHHHHHHhcC
Q 037126 12 KGYGFVRFGDENERSRAMIEMNG 34 (192)
Q Consensus 12 ~g~afV~f~~~~~A~~A~~~l~~ 34 (192)
+...-|.|.++++|+.+.+.|.-
T Consensus 2 ~~~l~i~f~s~~~A~ii~~sL~~ 24 (76)
T PF09341_consen 2 SFTLEIPFESEEKAEIIYRSLKP 24 (76)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCHHHHHHHHHHhCC
Confidence 34567999999999998876543
No 235
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=25.49 E-value=38 Score=20.17 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=8.5
Q ss_pred CcceEEEEEecC
Q 037126 10 RTKGYGFVRFGD 21 (192)
Q Consensus 10 ~s~g~afV~f~~ 21 (192)
..+|||||+=.+
T Consensus 13 ~~kGyGFI~~~~ 24 (69)
T PRK09507 13 ESKGFGFITPED 24 (69)
T ss_pred CCCCcEEEecCC
Confidence 468999996443
No 236
>PRK15463 cold shock-like protein CspF; Provisional
Probab=25.19 E-value=39 Score=20.22 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=8.6
Q ss_pred CcceEEEEEecC
Q 037126 10 RTKGYGFVRFGD 21 (192)
Q Consensus 10 ~s~g~afV~f~~ 21 (192)
..+|||||+=.+
T Consensus 14 ~~kGfGFI~~~~ 25 (70)
T PRK15463 14 GKSGKGLITPSD 25 (70)
T ss_pred CCCceEEEecCC
Confidence 468999996543
No 237
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=24.94 E-value=71 Score=24.92 Aligned_cols=23 Identities=48% Similarity=0.743 Sum_probs=19.6
Q ss_pred CCCHHHHHHHhccCCCeEEEEEe
Q 037126 97 DVSDKDLREPFSHFGEILSVKIP 119 (192)
Q Consensus 97 ~~~~~~l~~~f~~~g~i~~~~~~ 119 (192)
..+++.|+..|..||.|..+.++
T Consensus 172 lpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 172 LPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CChHHHHHHHHHHhccceecCCc
Confidence 35778999999999999988775
No 238
>PRK10943 cold shock-like protein CspC; Provisional
Probab=24.69 E-value=39 Score=20.13 Aligned_cols=12 Identities=42% Similarity=0.963 Sum_probs=8.6
Q ss_pred CcceEEEEEecC
Q 037126 10 RTKGYGFVRFGD 21 (192)
Q Consensus 10 ~s~g~afV~f~~ 21 (192)
..+|||||+=.+
T Consensus 13 ~~kGfGFI~~~~ 24 (69)
T PRK10943 13 ESKGFGFITPAD 24 (69)
T ss_pred CCCCcEEEecCC
Confidence 468999996443
No 239
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=24.63 E-value=47 Score=30.04 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=32.5
Q ss_pred ceEEEEEecCHHHHHHHHHHhcCcee--CCceeEEeecCCC
Q 037126 12 KGYGFVRFGDENERSRAMIEMNGVYC--SSRPMSIDVATPK 50 (192)
Q Consensus 12 ~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~i~v~~~~~~ 50 (192)
--.|.|+|.+.+.|..|+++++|.++ -|-+.+|..++.-
T Consensus 334 ~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 334 LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 34699999999999999999999884 7778888776543
No 240
>PF09180 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR016061 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Prolyl tRNA synthetase (6.1.1.15 from EC) exists in two forms, which are loosely related. The first form is present in the majority of eubacteria species. The second one, present in some eubacteria, is essentially present in archaea and eukaryota. Prolyl-tRNA synthetase belongs to class IIa. This domain is found at the C-terminal in archaeal and eukaryotic enzymes, as well as in certain bacterial ones.; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ6_A 1NJ2_A 1NJ5_A 1NJ1_A 1H4T_C 1H4S_A 1HC7_C 1H4Q_B 3IAL_B.
Probab=24.42 E-value=96 Score=18.37 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=24.4
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCceeCCceeE
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGVYCSSRPMS 43 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~ 43 (192)
..|++.+-|...++.+..|+...|..+.+-++.
T Consensus 10 ~gg~v~~pwcg~~ece~~ike~t~at~rciP~~ 42 (68)
T PF09180_consen 10 KGGFVLVPWCGDEECEEKIKEETGATIRCIPFD 42 (68)
T ss_dssp TSSEEEEEES-SHHHHHHHHHHHS-EEEEEETT
T ss_pred CCCEEEEEccCCHHHHHHHHHhcCCcEeEeEcc
Confidence 458999999999999999998886655444443
No 241
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=24.03 E-value=47 Score=19.68 Aligned_cols=12 Identities=33% Similarity=0.717 Sum_probs=9.1
Q ss_pred CcceEEEEEecC
Q 037126 10 RTKGYGFVRFGD 21 (192)
Q Consensus 10 ~s~g~afV~f~~ 21 (192)
..+|||||+=.+
T Consensus 11 ~~kGfGFI~~~~ 22 (68)
T TIGR02381 11 NAKGFGFICPEG 22 (68)
T ss_pred CCCCeEEEecCC
Confidence 468999996655
No 242
>PF15063 TC1: Thyroid cancer protein 1
Probab=23.59 E-value=45 Score=20.39 Aligned_cols=28 Identities=14% Similarity=0.161 Sum_probs=23.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCe
Q 037126 86 NATIFVGALDSDVSDKDLREPFSHFGEI 113 (192)
Q Consensus 86 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i 113 (192)
.++--+.|+-.+++...|+.+|..-|+.
T Consensus 25 ~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 25 SRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred HhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 4455578899999999999999998874
No 243
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=23.03 E-value=1e+02 Score=27.94 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=26.2
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCceeCCce-eEEee
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGVYCSSRP-MSIDV 46 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~-i~v~~ 46 (192)
..+.|||+|.+..+|+.|-+..-...+.+.. +.+.+
T Consensus 356 ~~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iap 392 (827)
T COG5594 356 PTKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAP 392 (827)
T ss_pred ccccEEEEEehhHHHHHHHHhhhhhhhhcceeeeecC
Confidence 3568999999999999999876555554444 44444
No 244
>PRK09890 cold shock protein CspG; Provisional
Probab=21.88 E-value=47 Score=19.82 Aligned_cols=11 Identities=36% Similarity=0.821 Sum_probs=7.9
Q ss_pred CcceEEEEEec
Q 037126 10 RTKGYGFVRFG 20 (192)
Q Consensus 10 ~s~g~afV~f~ 20 (192)
..+|||||+=.
T Consensus 14 ~~kGfGFI~~~ 24 (70)
T PRK09890 14 ADKGFGFITPD 24 (70)
T ss_pred CCCCcEEEecC
Confidence 35899999543
No 245
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=21.31 E-value=1.1e+02 Score=19.05 Aligned_cols=19 Identities=5% Similarity=0.396 Sum_probs=13.3
Q ss_pred CCCcceEEEEEecCHHHHHH
Q 037126 8 TDRTKGYGFVRFGDENERSR 27 (192)
Q Consensus 8 tg~s~g~afV~f~~~~~A~~ 27 (192)
.+.+.|||.| |.+.+.+.+
T Consensus 44 ~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 44 GGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SSEEEEEEEE-ESSHHHHHH
T ss_pred CceEEEEEEE-eCCHHHHHH
Confidence 3577888876 777777654
No 246
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=21.26 E-value=49 Score=19.70 Aligned_cols=10 Identities=40% Similarity=0.899 Sum_probs=7.6
Q ss_pred CcceEEEEEe
Q 037126 10 RTKGYGFVRF 19 (192)
Q Consensus 10 ~s~g~afV~f 19 (192)
..+|||||+=
T Consensus 14 ~~kGfGFI~~ 23 (70)
T PRK10354 14 ADKGFGFITP 23 (70)
T ss_pred CCCCcEEEec
Confidence 3589999963
No 247
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.23 E-value=1.1e+02 Score=26.62 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=27.1
Q ss_pred EEEEEecCHHHHHHHHHHhcCceeCC--ceeEEee
Q 037126 14 YGFVRFGDENERSRAMIEMNGVYCSS--RPMSIDV 46 (192)
Q Consensus 14 ~afV~f~~~~~A~~A~~~l~~~~~~g--~~i~v~~ 46 (192)
||.|+|.+.+.|....+.++|..+.. ..+.+.+
T Consensus 270 yAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 270 YAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred EEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 69999999999999999999999844 4444444
Done!