Query 037126
Match_columns 192
No_of_seqs 117 out of 1692
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 15:00:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 4.5E-28 1.5E-32 179.2 15.1 133 1-161 46-182 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 1.9E-27 6.6E-32 168.6 17.4 128 2-158 32-165 (166)
3 2qfj_A FBP-interacting repress 100.0 1.5E-27 5.1E-32 176.3 16.0 144 1-163 59-208 (216)
4 1b7f_A Protein (SXL-lethal pro 100.0 2.3E-27 7.8E-32 168.7 15.9 127 1-157 34-168 (168)
5 1fxl_A Paraneoplastic encephal 100.0 5.1E-27 1.7E-31 166.5 15.4 126 2-157 34-167 (167)
6 1fje_B Nucleolin RBD12, protei 99.9 3.6E-27 1.2E-31 168.9 14.0 129 2-160 44-174 (175)
7 1l3k_A Heterogeneous nuclear r 99.9 7.8E-27 2.7E-31 169.9 15.2 137 1-163 44-186 (196)
8 2yh0_A Splicing factor U2AF 65 99.9 1.4E-26 4.8E-31 168.8 16.1 149 3-162 42-196 (198)
9 3pgw_A U1-A; protein-RNA compl 99.9 1.6E-25 5.4E-30 171.9 18.7 151 8-158 48-281 (282)
10 2g4b_A Splicing factor U2AF 65 99.9 2.4E-26 8.3E-31 164.0 13.0 124 4-158 43-172 (172)
11 2adc_A Polypyrimidine tract-bi 99.9 1.7E-25 5.7E-30 167.1 16.9 149 12-160 72-228 (229)
12 3nmr_A Cugbp ELAV-like family 99.9 4.9E-26 1.7E-30 162.7 13.4 129 1-158 34-175 (175)
13 3smz_A Protein raver-1, ribonu 99.9 1.1E-25 3.6E-30 173.1 15.8 134 2-162 127-266 (284)
14 1qm9_A Polypyrimidine tract-bi 99.9 1.6E-25 5.6E-30 163.4 14.2 149 12-160 41-197 (198)
15 2cjk_A Nuclear polyadenylated 99.9 2.8E-26 9.7E-31 162.9 8.5 127 1-160 34-166 (167)
16 2ghp_A U4/U6 snRNA-associated 99.9 7.4E-25 2.5E-29 169.0 14.8 134 2-160 150-291 (292)
17 2kn4_A Immunoglobulin G-bindin 99.9 1.8E-24 6.2E-29 152.7 14.9 144 1-163 4-153 (158)
18 3tyt_A Heterogeneous nuclear r 99.9 1.9E-24 6.5E-29 158.7 13.8 147 11-157 41-204 (205)
19 2i2y_A Fusion protein consists 99.9 7.4E-25 2.5E-29 153.5 11.1 138 9-161 10-149 (150)
20 3smz_A Protein raver-1, ribonu 99.9 2.5E-23 8.7E-28 159.8 15.8 117 9-161 54-176 (284)
21 2ghp_A U4/U6 snRNA-associated 99.9 7.2E-23 2.5E-27 157.8 14.2 122 2-163 73-200 (292)
22 3sde_A Paraspeckle component 1 99.9 2.2E-22 7.6E-27 152.9 14.4 117 9-161 55-180 (261)
23 2cq1_A PTB-like protein L; RRM 99.8 2.2E-19 7.6E-24 117.0 14.5 84 81-164 10-95 (101)
24 3r27_A HnRNP L, heterogeneous 99.8 7.2E-20 2.5E-24 118.4 11.5 81 81-161 16-98 (100)
25 1sjq_A Polypyrimidine tract-bi 99.8 6.7E-20 2.3E-24 119.7 10.3 82 83-164 13-96 (105)
26 4f25_A Polyadenylate-binding p 99.8 1.1E-19 3.7E-24 121.5 10.7 99 85-186 4-106 (115)
27 4fxv_A ELAV-like protein 1; RN 99.8 1.2E-19 4.2E-24 118.0 10.4 76 84-159 17-98 (99)
28 1wex_A Hypothetical protein (r 99.8 3.6E-19 1.2E-23 116.7 12.4 83 81-163 10-94 (104)
29 1x4d_A Matrin 3; structural ge 99.8 2.8E-19 9.7E-24 116.5 11.5 78 83-160 12-92 (102)
30 2cpj_A Non-POU domain-containi 99.8 6.7E-19 2.3E-23 114.5 12.5 84 80-163 9-92 (99)
31 2cq3_A RNA-binding protein 9; 99.8 2.4E-18 8.1E-23 112.7 14.7 85 80-164 9-97 (103)
32 1why_A Hypothetical protein ri 99.8 1.2E-18 4.1E-23 112.9 12.9 81 81-161 12-94 (97)
33 2ad9_A Polypyrimidine tract-bi 99.8 5E-19 1.7E-23 118.2 11.2 83 82-164 27-111 (119)
34 2wbr_A GW182, gawky, LD47780P; 99.8 3.8E-19 1.3E-23 111.3 9.8 74 85-158 6-79 (89)
35 2lea_A Serine/arginine-rich sp 99.8 6.8E-20 2.3E-24 125.9 6.5 120 13-163 5-130 (135)
36 2dgo_A Cytotoxic granule-assoc 99.8 2.5E-18 8.6E-23 114.8 13.6 85 80-164 9-99 (115)
37 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.2E-18 1.1E-22 112.0 13.8 84 80-163 9-96 (103)
38 2ytc_A PRE-mRNA-splicing facto 99.8 9.4E-19 3.2E-23 110.6 10.3 79 80-158 6-85 (85)
39 1x4g_A Nucleolysin TIAR; struc 99.8 2.1E-18 7.1E-23 114.1 12.1 81 83-163 22-102 (109)
40 2do4_A Squamous cell carcinoma 99.8 3.7E-18 1.3E-22 111.1 13.0 83 80-162 11-98 (100)
41 2dnq_A RNA-binding protein 4B; 99.8 3.1E-18 1.1E-22 109.4 12.2 79 83-163 5-83 (90)
42 2dnh_A Bruno-like 5, RNA bindi 99.8 2.9E-18 1E-22 112.6 12.4 84 81-164 10-101 (105)
43 2cph_A RNA binding motif prote 99.8 3.4E-18 1.2E-22 112.6 12.7 85 80-164 9-101 (107)
44 1x4a_A Splicing factor, argini 99.8 9E-18 3.1E-22 111.0 14.8 84 80-163 16-102 (109)
45 2d9p_A Polyadenylate-binding p 99.8 2.8E-18 9.7E-23 112.3 12.2 85 80-164 9-97 (103)
46 1rk8_A CG8781-PA, CG8781-PA pr 99.8 9.8E-19 3.4E-23 124.1 10.4 137 17-163 11-155 (165)
47 1whw_A Hypothetical protein ri 99.8 3.6E-18 1.2E-22 111.0 12.1 81 83-163 5-91 (99)
48 1x4f_A Matrin 3; structural ge 99.8 1.9E-18 6.3E-23 114.3 10.6 81 83-163 22-105 (112)
49 3md1_A Nuclear and cytoplasmic 99.8 2.7E-18 9.4E-23 107.9 10.8 75 87-161 2-82 (83)
50 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.2E-18 1.1E-22 111.9 11.2 83 82-164 8-96 (102)
51 2hvz_A Splicing factor, argini 99.8 1.8E-18 6.3E-23 112.8 9.9 98 87-185 1-99 (101)
52 2cq0_A Eukaryotic translation 99.8 5.7E-18 1.9E-22 110.8 12.3 85 80-164 9-99 (103)
53 2cpf_A RNA binding motif prote 99.8 3.3E-18 1.1E-22 111.0 11.0 80 84-163 3-91 (98)
54 2cpz_A CUG triplet repeat RNA- 99.8 8E-18 2.7E-22 112.3 13.2 85 80-164 19-109 (115)
55 2dnm_A SRP46 splicing factor; 99.8 4.5E-18 1.5E-22 111.3 11.7 84 80-163 7-96 (103)
56 2dgx_A KIAA0430 protein; RRM d 99.8 4.2E-18 1.4E-22 110.1 11.4 80 84-163 7-93 (96)
57 2dgs_A DAZ-associated protein 99.8 8.6E-18 2.9E-22 109.2 12.9 82 82-164 6-93 (99)
58 2la4_A Nuclear and cytoplasmic 99.8 1.9E-18 6.4E-23 112.8 9.5 77 83-159 24-100 (101)
59 1x4h_A RNA-binding protein 28; 99.8 9E-18 3.1E-22 111.3 13.0 85 80-164 9-105 (111)
60 2e5h_A Zinc finger CCHC-type a 99.8 8.3E-18 2.9E-22 108.2 12.4 79 80-158 10-94 (94)
61 2dgt_A RNA-binding protein 30; 99.8 1E-17 3.6E-22 107.4 12.7 81 81-163 5-85 (92)
62 3s8s_A Histone-lysine N-methyl 99.8 4.3E-18 1.5E-22 112.7 11.1 77 84-160 4-86 (110)
63 4a8x_A RNA-binding protein wit 99.8 4.7E-18 1.6E-22 108.0 10.9 78 84-161 2-86 (88)
64 2x1f_A MRNA 3'-END-processing 99.8 4.8E-18 1.7E-22 109.8 11.1 78 85-162 1-84 (96)
65 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.5E-18 1.5E-22 107.4 10.6 76 83-158 4-85 (85)
66 1x5u_A Splicing factor 3B subu 99.8 9.4E-18 3.2E-22 110.1 12.5 85 80-164 9-99 (105)
67 2dnz_A Probable RNA-binding pr 99.8 9.3E-18 3.2E-22 108.2 12.2 80 84-163 3-88 (95)
68 1x4c_A Splicing factor, argini 99.8 1.7E-17 5.9E-22 109.5 13.7 80 83-163 12-96 (108)
69 2dgu_A Heterogeneous nuclear r 99.8 9.7E-18 3.3E-22 109.8 12.4 81 82-164 7-87 (103)
70 1x5t_A Splicing factor 3B subu 99.8 3.4E-18 1.2E-22 110.5 10.1 81 84-164 3-90 (96)
71 2lxi_A RNA-binding protein 10; 99.8 6.7E-19 2.3E-23 112.8 6.6 77 86-162 1-85 (91)
72 2cpd_A Apobec-1 stimulating pr 99.8 2.3E-17 7.8E-22 107.2 13.8 81 80-162 9-91 (99)
73 2do0_A HnRNP M, heterogeneous 99.8 2.1E-17 7.1E-22 110.1 13.8 83 81-163 10-97 (114)
74 3bs9_A Nucleolysin TIA-1 isofo 99.8 4.2E-18 1.4E-22 108.0 9.9 77 84-160 4-86 (87)
75 2jvo_A Nucleolar protein 3; nu 99.8 5.7E-18 1.9E-22 111.9 10.9 81 80-162 25-105 (108)
76 1whx_A Hypothetical protein ri 99.8 4.6E-18 1.6E-22 112.8 10.4 78 84-161 8-85 (111)
77 2cpi_A CCR4-NOT transcription 99.8 9.5E-18 3.2E-22 111.3 11.5 82 80-161 9-102 (111)
78 1x5s_A Cold-inducible RNA-bind 99.8 6.6E-18 2.2E-22 110.3 10.5 83 81-163 7-95 (102)
79 2dnp_A RNA-binding protein 14; 99.8 1.5E-17 5.2E-22 106.1 12.0 80 82-163 5-84 (90)
80 2ywk_A Putative RNA-binding pr 99.8 5.7E-18 2E-22 109.2 10.0 80 80-159 10-94 (95)
81 2dgp_A Bruno-like 4, RNA bindi 99.8 1E-17 3.4E-22 110.2 11.2 84 80-163 7-99 (106)
82 2cqh_A IGF-II mRNA-binding pro 99.8 3.6E-18 1.2E-22 109.7 8.9 80 83-163 5-86 (93)
83 2cqc_A Arginine/serine-rich sp 99.8 1.1E-17 3.7E-22 107.8 11.2 80 80-159 9-94 (95)
84 2err_A Ataxin-2-binding protei 99.8 7.6E-18 2.6E-22 111.4 10.6 81 80-160 23-107 (109)
85 2cpe_A RNA-binding protein EWS 99.8 1.7E-17 5.7E-22 110.4 12.3 84 80-163 9-106 (113)
86 2dgv_A HnRNP M, heterogeneous 99.8 5.5E-18 1.9E-22 108.6 9.6 80 83-162 5-88 (92)
87 2khc_A Testis-specific RNP-typ 99.8 1.1E-17 3.9E-22 112.0 11.4 79 80-158 34-118 (118)
88 2lkz_A RNA-binding protein 5; 99.8 6E-18 2.1E-22 109.0 9.5 78 82-159 5-94 (95)
89 2xnq_A Nuclear polyadenylated 99.8 1.8E-17 6.2E-22 107.3 11.8 79 80-160 16-95 (97)
90 2fy1_A RNA-binding motif prote 99.8 1.5E-17 5.2E-22 111.2 11.8 81 83-163 4-89 (116)
91 1oo0_B CG8781-PA, drosophila Y 99.8 1E-17 3.6E-22 110.9 10.8 82 80-161 20-107 (110)
92 1x5p_A Negative elongation fac 99.8 5.4E-17 1.8E-21 105.0 14.0 80 82-163 11-90 (97)
93 2cq2_A Hypothetical protein LO 99.8 7.5E-18 2.6E-22 111.4 10.0 80 83-162 22-108 (114)
94 1wf1_A RNA-binding protein RAL 99.8 2E-17 6.8E-22 109.6 12.1 78 84-163 25-103 (110)
95 1wi8_A EIF-4B, eukaryotic tran 99.7 3.4E-17 1.2E-21 107.3 12.7 81 81-163 10-97 (104)
96 1p27_B RNA-binding protein 8A; 99.7 7.9E-18 2.7E-22 110.7 9.6 80 81-160 18-103 (106)
97 1nu4_A U1A RNA binding domain; 99.7 1.3E-17 4.3E-22 108.0 10.1 79 83-161 5-90 (97)
98 2e5j_A Methenyltetrahydrofolat 99.7 4.2E-17 1.4E-21 105.5 12.1 80 81-161 14-95 (97)
99 2jrs_A RNA-binding protein 39; 99.7 1.6E-17 5.6E-22 109.6 10.1 81 80-160 20-106 (108)
100 2kxn_B Transformer-2 protein h 99.7 1.5E-17 5.2E-22 113.2 10.2 82 80-161 40-127 (129)
101 2dhg_A TRNA selenocysteine ass 99.7 1E-17 3.5E-22 109.8 9.0 83 82-164 5-94 (104)
102 2dng_A Eukaryotic translation 99.7 5.6E-17 1.9E-21 106.1 12.4 82 80-163 9-96 (103)
103 2jvr_A Nucleolar protein 3; RN 99.7 1.3E-17 4.6E-22 110.3 9.2 77 84-160 26-105 (111)
104 2la6_A RNA-binding protein FUS 99.7 2.7E-17 9.4E-22 106.8 10.3 79 80-158 7-99 (99)
105 2cqd_A RNA-binding region cont 99.7 7.8E-17 2.7E-21 107.7 12.7 82 80-162 11-98 (116)
106 2kvi_A Nuclear polyadenylated 99.7 1.2E-17 4.2E-22 107.9 8.4 80 82-163 6-86 (96)
107 3ex7_B RNA-binding protein 8A; 99.7 2.1E-17 7.2E-22 112.0 10.0 84 80-163 16-105 (126)
108 2a3j_A U1 small nuclear ribonu 99.7 2.4E-17 8.3E-22 111.7 10.2 79 83-161 26-111 (127)
109 3ulh_A THO complex subunit 4; 99.7 3.4E-17 1.2E-21 107.8 10.7 79 80-158 23-106 (107)
110 2dh8_A DAZ-associated protein 99.7 2.6E-17 8.8E-22 108.1 10.0 83 80-163 10-98 (105)
111 2fc9_A NCL protein; structure 99.7 9.5E-17 3.3E-21 104.6 12.4 84 80-163 9-94 (101)
112 1u6f_A Tcubp1, RNA-binding pro 99.7 6.3E-17 2.2E-21 111.5 12.0 84 80-163 36-125 (139)
113 2div_A TRNA selenocysteine ass 99.7 2.6E-17 8.9E-22 106.9 9.4 79 83-161 6-95 (99)
114 3zzy_A Polypyrimidine tract-bi 99.7 1.1E-16 3.9E-21 108.1 12.6 81 84-164 26-110 (130)
115 2e5i_A Heterogeneous nuclear r 99.7 1.6E-16 5.5E-21 106.9 13.2 77 87-163 26-105 (124)
116 2m2b_A RNA-binding protein 10; 99.7 2.3E-17 7.9E-22 112.6 8.9 84 80-164 17-112 (131)
117 3ucg_A Polyadenylate-binding p 99.7 5.1E-17 1.8E-21 103.4 9.8 75 85-160 5-85 (89)
118 1wg1_A KIAA1579 protein, homol 99.7 7.1E-17 2.4E-21 102.6 10.3 76 84-160 3-78 (88)
119 2nlw_A Eukaryotic translation 99.7 6.3E-17 2.1E-21 106.3 10.3 79 82-160 11-100 (105)
120 2dis_A Unnamed protein product 99.7 5E-17 1.7E-21 107.4 9.7 80 83-162 5-94 (109)
121 2cqg_A TDP-43, TAR DNA-binding 99.7 2.6E-16 8.8E-21 102.9 13.0 82 80-163 9-96 (103)
122 3p5t_L Cleavage and polyadenyl 99.7 6.4E-18 2.2E-22 107.9 5.0 77 87-163 2-86 (90)
123 2e44_A Insulin-like growth fac 99.7 9E-17 3.1E-21 103.7 10.5 79 83-161 12-93 (96)
124 2cqp_A RNA-binding protein 12; 99.7 3.8E-17 1.3E-21 105.9 8.7 79 82-160 11-95 (98)
125 1p1t_A Cleavage stimulation fa 99.7 9.4E-18 3.2E-22 109.9 5.8 79 84-162 6-90 (104)
126 2kt5_A RNA and export factor-b 99.7 2.5E-16 8.7E-21 106.4 13.1 82 82-163 31-117 (124)
127 2dgw_A Probable RNA-binding pr 99.7 1.4E-16 4.7E-21 101.9 10.8 78 82-161 6-88 (91)
128 1x5o_A RNA binding motif, sing 99.7 2.1E-16 7.1E-21 105.2 11.9 80 81-160 20-112 (114)
129 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.5E-16 5.3E-21 111.6 11.9 83 81-163 34-122 (156)
130 3ns6_A Eukaryotic translation 99.7 1.4E-17 4.9E-22 108.4 6.1 76 84-159 4-92 (100)
131 3lqv_A PRE-mRNA branch site pr 99.7 1.3E-16 4.3E-21 106.4 10.8 78 84-161 6-86 (115)
132 1s79_A Lupus LA protein; RRM, 99.7 4.2E-17 1.5E-21 106.6 8.2 75 83-158 8-87 (103)
133 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.8E-16 6.1E-21 109.2 11.8 78 80-157 57-140 (140)
134 2cpx_A Hypothetical protein FL 99.7 1.8E-16 6E-21 105.7 11.3 82 83-164 22-109 (115)
135 1x4e_A RNA binding motif, sing 99.7 2E-17 6.9E-22 104.4 6.0 75 84-158 3-83 (85)
136 3s7r_A Heterogeneous nuclear r 99.7 1.6E-16 5.4E-21 100.7 10.1 76 81-157 6-87 (87)
137 2cq4_A RNA binding motif prote 99.7 9.2E-17 3.2E-21 107.0 9.4 77 83-160 22-104 (114)
138 2j76_E EIF-4B, EIF4B, eukaryot 99.7 4.8E-17 1.6E-21 105.9 7.7 79 80-160 13-98 (100)
139 1sjr_A Polypyrimidine tract-bi 99.7 2.1E-16 7.1E-21 110.7 11.2 80 84-163 44-127 (164)
140 2e5g_A U6 snRNA-specific termi 99.7 3.3E-16 1.1E-20 100.7 11.1 78 84-162 6-84 (94)
141 1x4b_A Heterogeneous nuclear r 99.7 1.6E-16 5.3E-21 106.2 9.6 80 83-163 24-109 (116)
142 2bz2_A Negative elongation fac 99.7 1.7E-16 5.9E-21 106.7 9.9 79 82-162 35-113 (121)
143 2jwn_A Embryonic polyadenylate 99.7 1.4E-16 4.6E-21 107.7 9.4 78 84-162 34-117 (124)
144 2rs2_A Musashi-1, RNA-binding 99.7 2.6E-16 8.8E-21 104.0 10.4 82 80-162 19-106 (109)
145 2fc8_A NCL protein; structure 99.7 5.3E-16 1.8E-20 101.2 11.6 84 80-163 9-95 (102)
146 3n9u_C Cleavage and polyadenyl 99.7 1.6E-16 5.6E-21 111.4 9.7 77 84-160 53-137 (156)
147 2ek1_A RNA-binding protein 12; 99.7 5.4E-17 1.9E-21 104.5 6.6 77 83-159 12-94 (95)
148 1wg5_A Heterogeneous nuclear r 99.7 5E-16 1.7E-20 101.8 11.1 79 82-161 11-95 (104)
149 2diu_A KIAA0430 protein; struc 99.7 3.5E-16 1.2E-20 98.8 9.7 75 84-162 6-86 (96)
150 2hzc_A Splicing factor U2AF 65 99.7 2.2E-16 7.6E-21 100.0 8.7 72 84-156 4-86 (87)
151 1fjc_A Nucleolin RBD2, protein 99.7 3E-16 1E-20 101.2 9.4 81 81-162 11-93 (96)
152 3beg_B Splicing factor, argini 99.7 2.3E-16 7.8E-21 105.3 9.1 76 84-160 14-94 (115)
153 3tyt_A Heterogeneous nuclear r 99.7 5.4E-16 1.8E-20 113.6 11.6 77 84-160 2-80 (205)
154 2krb_A Eukaryotic translation 99.7 8.6E-17 3E-21 100.6 5.9 68 87-154 2-80 (81)
155 3d2w_A TAR DNA-binding protein 99.7 8.8E-16 3E-20 97.7 10.1 78 81-162 6-86 (89)
156 2ki2_A SS-DNA binding protein 99.7 3.5E-17 1.2E-21 104.4 3.5 75 87-162 2-82 (90)
157 2db1_A Heterogeneous nuclear r 99.7 4.3E-16 1.5E-20 104.4 9.0 79 81-160 12-98 (118)
158 2cpy_A RNA-binding protein 12; 99.7 4.5E-16 1.5E-20 103.7 8.9 79 82-161 11-95 (114)
159 2mss_A Protein (musashi1); RNA 99.7 1.4E-16 4.9E-21 98.1 6.0 69 88-157 1-75 (75)
160 2dnn_A RNA-binding protein 12; 99.7 9.6E-16 3.3E-20 101.1 9.7 74 83-158 13-91 (109)
161 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.1E-16 7.2E-21 97.8 6.0 70 87-157 1-76 (77)
162 1fj7_A Nucleolin RBD1, protein 99.6 1.7E-15 5.9E-20 98.5 10.4 78 83-162 14-97 (101)
163 1wf0_A TDP-43, TAR DNA-binding 99.6 5.7E-16 2E-20 98.3 7.7 78 84-163 3-81 (88)
164 3egn_A RNA-binding protein 40; 99.6 6.9E-16 2.4E-20 106.8 8.8 80 83-162 42-132 (143)
165 3u1l_A PRE-mRNA-splicing facto 99.6 4.7E-16 1.6E-20 115.7 8.3 80 83-162 131-231 (240)
166 1wel_A RNA-binding protein 12; 99.6 3.1E-16 1.1E-20 105.9 6.3 78 82-160 21-104 (124)
167 1b7f_A Protein (SXL-lethal pro 99.6 2.5E-15 8.5E-20 106.2 10.9 77 85-161 2-84 (168)
168 2adc_A Polypyrimidine tract-bi 99.6 2.7E-15 9.3E-20 111.7 11.2 79 82-160 30-110 (229)
169 2lcw_A RNA-binding protein FUS 99.4 2.5E-17 8.6E-22 110.1 0.0 81 83-163 4-98 (116)
170 1fxl_A Paraneoplastic encephal 99.6 3.6E-15 1.2E-19 105.1 11.2 75 86-160 2-82 (167)
171 1wez_A HnRNP H', FTP-3, hetero 99.6 1.8E-15 6.3E-20 98.7 8.9 79 82-162 11-94 (102)
172 2hgl_A HNRPF protein, heteroge 99.6 7.2E-16 2.5E-20 105.6 7.1 78 81-159 39-124 (136)
173 3sde_A Paraspeckle component 1 99.6 4E-15 1.4E-19 112.9 11.8 80 80-159 16-95 (261)
174 2xs2_A Deleted in azoospermia- 99.6 5.5E-16 1.9E-20 101.1 5.6 78 82-161 5-87 (102)
175 2f3j_A RNA and export factor b 99.6 2.1E-15 7.2E-20 108.0 9.0 79 82-160 84-167 (177)
176 2lmi_A GRSF-1, G-rich sequence 99.6 8.5E-16 2.9E-20 101.2 6.2 78 81-159 6-91 (107)
177 3md3_A Nuclear and cytoplasmic 99.6 4E-15 1.4E-19 104.8 10.0 76 87-162 1-81 (166)
178 2dit_A HIV TAT specific factor 99.6 2.2E-14 7.4E-19 95.2 12.8 83 81-163 10-105 (112)
179 3pgw_S U1-70K; protein-RNA com 99.6 5.1E-15 1.8E-19 119.8 11.6 83 83-165 99-187 (437)
180 1iqt_A AUF1, heterogeneous nuc 99.6 5.7E-16 2E-20 95.3 4.5 69 88-157 1-75 (75)
181 3q2s_C Cleavage and polyadenyl 99.6 1.5E-15 5.2E-20 113.0 7.5 75 85-159 67-149 (229)
182 1l3k_A Heterogeneous nuclear r 99.6 4.8E-15 1.6E-19 107.3 9.9 101 80-186 7-113 (196)
183 2hgn_A Heterogeneous nuclear r 99.6 5.1E-16 1.8E-20 106.6 4.4 78 83-162 43-125 (139)
184 4f02_A Polyadenylate-binding p 99.6 7.8E-15 2.7E-19 108.0 10.8 77 84-160 13-95 (213)
185 1qm9_A Polypyrimidine tract-bi 99.6 6.9E-15 2.4E-19 106.9 9.7 76 85-160 2-79 (198)
186 2pe8_A Splicing factor 45; RRM 99.6 1.4E-14 4.9E-19 94.8 10.2 76 83-158 5-92 (105)
187 2qfj_A FBP-interacting repress 99.6 2.3E-15 7.9E-20 110.6 7.1 77 84-160 26-108 (216)
188 2voo_A Lupus LA protein; RNA-b 99.6 2.7E-14 9.4E-19 103.5 12.4 74 85-159 108-186 (193)
189 2g4b_A Splicing factor U2AF 65 99.6 1.4E-14 4.9E-19 102.7 10.4 75 85-160 3-88 (172)
190 3pgw_A U1-A; protein-RNA compl 99.6 2.4E-14 8.1E-19 109.6 11.5 81 81-161 4-91 (282)
191 2yh0_A Splicing factor U2AF 65 99.6 2.1E-14 7.3E-19 104.0 10.6 75 85-160 3-88 (198)
192 2dnl_A Cytoplasmic polyadenyla 99.5 4.6E-14 1.6E-18 93.8 10.0 72 84-158 6-86 (114)
193 3nmr_A Cugbp ELAV-like family 99.5 2.4E-14 8.1E-19 101.7 9.2 77 85-161 2-89 (175)
194 2dha_A FLJ20171 protein; RRM d 99.5 4.7E-15 1.6E-19 99.8 5.1 75 84-159 21-104 (123)
195 2hgm_A HNRPF protein, heteroge 99.5 1.5E-14 5.1E-19 97.6 7.5 75 82-158 38-119 (126)
196 3v4m_A Splicing factor U2AF 65 99.5 1.3E-13 4.6E-18 90.2 9.3 75 84-158 3-95 (105)
197 2j8a_A Histone-lysine N-methyl 99.5 4.5E-14 1.5E-18 94.2 7.0 73 87-159 3-95 (136)
198 1fje_B Nucleolin RBD12, protei 99.5 2.5E-13 8.6E-18 96.6 10.6 80 81-161 8-92 (175)
199 3tht_A Alkylated DNA repair pr 99.5 1.5E-13 5.1E-18 107.4 9.5 78 81-158 13-97 (345)
200 4f25_A Polyadenylate-binding p 99.5 4.2E-14 1.4E-18 94.2 5.5 77 1-101 36-112 (115)
201 2cjk_A Nuclear polyadenylated 99.4 3.6E-13 1.2E-17 94.9 8.8 73 85-159 2-80 (167)
202 3ue2_A Poly(U)-binding-splicin 99.4 8.3E-13 2.8E-17 88.1 9.4 75 84-158 18-107 (118)
203 2d9o_A DNAJ (HSP40) homolog, s 99.4 9E-13 3.1E-17 85.3 9.2 66 96-163 27-93 (100)
204 3s6e_A RNA-binding protein 39; 99.4 1.9E-12 6.4E-17 85.8 10.1 75 84-158 5-91 (114)
205 1jmt_A Splicing factor U2AF 35 99.4 1.4E-13 4.9E-18 89.9 3.8 67 91-157 20-103 (104)
206 2lxi_A RNA-binding protein 10; 99.4 5E-13 1.7E-17 85.2 6.1 51 1-51 33-84 (91)
207 4fxv_A ELAV-like protein 1; RN 99.4 3.7E-13 1.3E-17 87.1 5.6 49 1-49 50-98 (99)
208 2lkz_A RNA-binding protein 5; 99.4 5.1E-13 1.7E-17 85.8 5.0 49 1-49 42-94 (95)
209 3s8s_A Histone-lysine N-methyl 99.3 2.2E-12 7.6E-17 85.1 6.0 50 1-50 37-86 (110)
210 3p5t_L Cleavage and polyadenyl 99.3 7.2E-13 2.5E-17 84.2 3.5 51 1-51 34-84 (90)
211 3md1_A Nuclear and cytoplasmic 99.3 7.4E-12 2.5E-16 78.1 6.4 49 2-50 33-81 (83)
212 1owx_A Lupus LA protein, SS-B, 99.3 4.2E-11 1.4E-15 79.6 10.1 78 80-157 12-93 (121)
213 2dnr_A Synaptojanin-1; RRM dom 99.2 5.8E-11 2E-15 74.3 8.7 74 84-160 5-86 (91)
214 3ns6_A Eukaryotic translation 99.2 7E-12 2.4E-16 81.2 4.7 49 1-49 43-92 (100)
215 3bs9_A Nucleolysin TIA-1 isofo 99.2 1.2E-11 4E-16 77.9 5.6 49 2-50 38-86 (87)
216 2fc8_A NCL protein; structure 99.2 1.5E-11 5E-16 79.9 6.2 52 1-52 43-94 (102)
217 2x1f_A MRNA 3'-END-processing 99.2 2E-11 6.9E-16 78.4 6.8 53 1-53 33-85 (96)
218 1x5t_A Splicing factor 3B subu 99.2 1.5E-11 5.1E-16 78.9 6.1 52 1-52 37-88 (96)
219 1whw_A Hypothetical protein ri 99.2 2.7E-11 9.2E-16 78.2 6.4 52 1-52 39-90 (99)
220 2cpe_A RNA-binding protein EWS 99.2 2.7E-11 9.3E-16 80.1 6.5 52 1-52 54-105 (113)
221 2la6_A RNA-binding protein FUS 99.2 1.6E-11 5.6E-16 79.2 5.2 46 2-47 53-98 (99)
222 2cqb_A Peptidyl-prolyl CIS-tra 99.2 2.2E-11 7.5E-16 79.0 5.8 53 1-53 43-95 (102)
223 2dnz_A Probable RNA-binding pr 99.2 2.5E-11 8.4E-16 77.7 5.8 52 1-52 36-87 (95)
224 2cqp_A RNA-binding protein 12; 99.2 3.2E-11 1.1E-15 77.7 6.4 50 1-50 46-95 (98)
225 3mdf_A Peptidyl-prolyl CIS-tra 99.2 2.1E-11 7.3E-16 76.3 5.3 47 2-48 39-85 (85)
226 2cq0_A Eukaryotic translation 99.2 3.3E-11 1.1E-15 78.4 6.3 51 2-52 47-97 (103)
227 2dgo_A Cytotoxic granule-assoc 99.2 3.5E-11 1.2E-15 79.8 6.4 53 1-53 46-98 (115)
228 2do4_A Squamous cell carcinoma 99.2 4.2E-11 1.5E-15 77.4 6.2 49 2-51 49-97 (100)
229 2cpz_A CUG triplet repeat RNA- 99.2 3.5E-11 1.2E-15 79.8 5.9 52 1-52 56-107 (115)
230 1x5u_A Splicing factor 3B subu 99.2 3.3E-11 1.1E-15 78.6 5.7 52 1-52 46-97 (105)
231 3n9u_C Cleavage and polyadenyl 99.2 2.9E-11 9.8E-16 84.6 5.6 50 1-50 88-137 (156)
232 2jrs_A RNA-binding protein 39; 99.2 2.4E-11 8.1E-16 79.8 4.9 50 1-50 57-106 (108)
233 2ek1_A RNA-binding protein 12; 99.2 3.9E-11 1.4E-15 76.7 5.8 48 1-48 46-93 (95)
234 2cqc_A Arginine/serine-rich sp 99.2 3.8E-11 1.3E-15 76.8 5.7 48 2-49 47-94 (95)
235 2dgw_A Probable RNA-binding pr 99.2 3.9E-11 1.3E-15 76.2 5.7 48 2-51 41-88 (91)
236 2dng_A Eukaryotic translation 99.2 3.7E-11 1.3E-15 78.1 5.6 51 1-52 45-95 (103)
237 2dgs_A DAZ-associated protein 99.2 4.7E-11 1.6E-15 77.0 6.0 51 1-52 41-91 (99)
238 1p27_B RNA-binding protein 8A; 99.2 2.8E-11 9.7E-16 79.0 4.9 49 2-50 55-103 (106)
239 2dnm_A SRP46 splicing factor; 99.2 3.3E-11 1.1E-15 78.3 5.1 51 1-51 44-94 (103)
240 2hvz_A Splicing factor, argini 99.2 2.1E-11 7.2E-16 79.0 4.1 41 11-51 36-76 (101)
241 1p1t_A Cleavage stimulation fa 99.2 2E-11 6.9E-16 79.4 4.0 52 2-53 40-91 (104)
242 2e5h_A Zinc finger CCHC-type a 99.2 4.3E-11 1.5E-15 76.4 5.4 47 2-48 48-94 (94)
243 1x4h_A RNA-binding protein 28; 99.2 6.3E-11 2.2E-15 78.0 6.2 53 1-53 46-104 (111)
244 1x5s_A Cold-inducible RNA-bind 99.2 3.5E-11 1.2E-15 78.0 4.9 51 1-51 43-93 (102)
245 1oo0_B CG8781-PA, drosophila Y 99.2 5.2E-11 1.8E-15 78.3 5.7 49 2-50 58-106 (110)
246 1fj7_A Nucleolin RBD1, protein 99.1 2.4E-11 8.2E-16 78.7 3.9 50 1-51 47-96 (101)
247 2div_A TRNA selenocysteine ass 99.1 4.8E-11 1.6E-15 76.9 5.2 50 1-50 41-94 (99)
248 2kxn_B Transformer-2 protein h 99.1 4.3E-11 1.5E-15 81.1 5.1 51 1-51 77-127 (129)
249 3ucg_A Polyadenylate-binding p 99.1 6E-11 2.1E-15 74.9 5.3 48 2-50 38-85 (89)
250 2dgp_A Bruno-like 4, RNA bindi 99.1 9.4E-11 3.2E-15 76.5 6.2 52 1-52 44-98 (106)
251 2kn4_A Immunoglobulin G-bindin 99.1 6.9E-11 2.4E-15 82.7 5.8 52 1-52 101-152 (158)
252 1wi8_A EIF-4B, eukaryotic tran 99.1 9.1E-11 3.1E-15 76.4 6.0 51 1-52 45-96 (104)
253 2mss_A Protein (musashi1); RNA 99.1 5E-11 1.7E-15 72.8 4.4 46 1-47 30-75 (75)
254 2m2b_A RNA-binding protein 10; 99.1 2.5E-11 8.4E-16 82.5 3.1 51 1-52 56-110 (131)
255 2j76_E EIF-4B, EIF4B, eukaryot 99.1 5.8E-11 2E-15 76.8 4.7 48 2-50 50-98 (100)
256 2cph_A RNA binding motif prote 99.1 1.2E-10 4.1E-15 76.1 6.2 51 2-52 47-99 (107)
257 2fc9_A NCL protein; structure 99.1 1.4E-10 4.9E-15 75.0 6.4 49 2-51 44-92 (101)
258 1jmt_A Splicing factor U2AF 35 99.1 8.7E-11 3E-15 76.6 5.3 45 2-47 59-103 (104)
259 1u6f_A Tcubp1, RNA-binding pro 99.1 9E-11 3.1E-15 80.4 5.7 52 1-52 73-124 (139)
260 2fy1_A RNA-binding motif prote 99.1 9.3E-11 3.2E-15 78.0 5.5 49 2-51 39-87 (116)
261 2pe8_A Splicing factor 45; RRM 99.1 1.2E-10 3.9E-15 76.1 5.8 47 2-48 45-92 (105)
262 4a8x_A RNA-binding protein wit 99.1 8.1E-11 2.8E-15 74.1 4.9 49 2-50 36-85 (88)
263 2dhg_A TRNA selenocysteine ass 99.1 6.2E-11 2.1E-15 77.1 4.4 51 1-52 41-92 (104)
264 2ki2_A SS-DNA binding protein 99.1 5.4E-11 1.8E-15 75.3 3.7 50 1-51 32-81 (90)
265 3ulh_A THO complex subunit 4; 99.1 1.3E-10 4.6E-15 75.9 5.6 46 2-48 61-106 (107)
266 2khc_A Testis-specific RNP-typ 99.1 7.4E-11 2.5E-15 78.5 4.3 47 1-47 71-117 (118)
267 2dnh_A Bruno-like 5, RNA bindi 99.1 1.5E-10 5.1E-15 75.4 5.7 50 2-52 47-99 (105)
268 2cpf_A RNA binding motif prote 99.1 9.4E-11 3.2E-15 75.4 4.5 51 2-52 37-90 (98)
269 2cpi_A CCR4-NOT transcription 99.1 2.4E-10 8.3E-15 75.3 6.3 50 2-51 50-102 (111)
270 2wbr_A GW182, gawky, LD47780P; 99.1 1.8E-10 6.1E-15 72.0 5.2 39 10-48 41-79 (89)
271 3ex7_B RNA-binding protein 8A; 99.1 1.3E-10 4.3E-15 78.3 4.8 51 2-52 54-104 (126)
272 2d9p_A Polyadenylate-binding p 99.1 2.1E-10 7E-15 74.5 5.5 49 2-52 47-95 (103)
273 2l9w_A U4/U6 snRNA-associated- 99.1 1.5E-09 5.2E-14 69.6 9.1 74 84-157 19-97 (117)
274 1ufw_A Synaptojanin 2; RNP dom 99.1 7.2E-10 2.5E-14 69.6 7.5 74 82-158 11-93 (95)
275 2kt5_A RNA and export factor-b 99.1 2.3E-10 8E-15 76.8 5.7 49 2-51 67-115 (124)
276 1wez_A HnRNP H', FTP-3, hetero 99.1 1.2E-10 4.1E-15 75.6 4.0 48 1-50 45-92 (102)
277 2dgx_A KIAA0430 protein; RRM d 99.0 3.4E-10 1.2E-14 72.6 6.1 46 2-50 45-90 (96)
278 1x4e_A RNA binding motif, sing 99.0 5.5E-11 1.9E-15 74.5 2.2 47 2-48 37-83 (85)
279 2dis_A Unnamed protein product 99.0 2.2E-10 7.6E-15 75.1 5.2 49 4-52 44-94 (109)
280 2ywk_A Putative RNA-binding pr 99.0 2.4E-10 8.1E-15 73.0 5.2 47 2-49 48-94 (95)
281 2a3j_A U1 small nuclear ribonu 99.0 2.2E-10 7.7E-15 77.3 5.3 46 7-52 67-112 (127)
282 2lea_A Serine/arginine-rich sp 99.0 1.1E-10 3.8E-15 79.7 3.8 52 1-52 78-129 (135)
283 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.0 2.2E-10 7.6E-15 78.4 5.2 47 1-47 94-140 (140)
284 2dh8_A DAZ-associated protein 99.0 1.8E-10 6.2E-15 75.0 4.5 51 1-52 47-97 (105)
285 2do0_A HnRNP M, heterogeneous 99.0 4.4E-10 1.5E-14 74.3 6.4 48 2-50 47-94 (114)
286 1h2v_Z 20 kDa nuclear CAP bind 99.0 3.4E-10 1.2E-14 79.1 6.0 51 1-51 70-120 (156)
287 2cqd_A RNA-binding region cont 99.0 2.7E-10 9.4E-15 75.5 5.1 49 1-50 48-96 (116)
288 2jwn_A Embryonic polyadenylate 99.0 3.4E-10 1.2E-14 76.0 5.5 48 2-50 68-115 (124)
289 3v4m_A Splicing factor U2AF 65 99.0 3.9E-10 1.3E-14 73.6 5.6 47 2-48 47-95 (105)
290 2rs2_A Musashi-1, RNA-binding 99.0 3.5E-10 1.2E-14 74.3 5.4 50 1-51 56-105 (109)
291 2dnn_A RNA-binding protein 12; 99.0 3.9E-10 1.3E-14 74.1 5.5 46 1-48 46-91 (109)
292 2cq4_A RNA binding motif prote 99.0 2.3E-10 7.9E-15 75.7 4.5 49 1-50 56-104 (114)
293 2cpy_A RNA-binding protein 12; 99.0 2.2E-10 7.4E-15 75.9 4.1 48 1-50 47-94 (114)
294 3lqv_A PRE-mRNA branch site pr 99.0 6.5E-11 2.2E-15 78.5 1.6 67 8-112 43-109 (115)
295 1uaw_A Mouse-musashi-1; RNP-ty 99.0 1.7E-10 5.7E-15 70.8 3.2 45 2-47 32-76 (77)
296 1x4b_A Heterogeneous nuclear r 99.0 3.5E-10 1.2E-14 75.0 5.1 51 1-52 58-108 (116)
297 2lcw_A RNA-binding protein FUS 98.6 3.4E-11 1.2E-15 80.0 0.0 52 1-52 46-97 (116)
298 2dgv_A HnRNP M, heterogeneous 99.0 3.9E-10 1.3E-14 71.6 4.9 44 8-51 44-87 (92)
299 2cpx_A Hypothetical protein FL 99.0 4.1E-10 1.4E-14 74.5 5.1 49 4-52 59-107 (115)
300 3s7r_A Heterogeneous nuclear r 99.0 4.8E-10 1.6E-14 70.4 5.1 46 1-47 42-87 (87)
301 2hgl_A HNRPF protein, heteroge 99.0 2.7E-10 9.1E-15 77.8 4.1 47 1-49 78-124 (136)
302 3q2s_C Cleavage and polyadenyl 99.0 2.1E-10 7E-15 85.2 3.8 50 1-50 101-150 (229)
303 1wel_A RNA-binding protein 12; 99.0 2.7E-10 9.3E-15 76.5 4.0 48 2-50 57-104 (124)
304 2nlw_A Eukaryotic translation 99.0 4.3E-10 1.5E-14 73.3 4.8 45 6-50 55-100 (105)
305 2db1_A Heterogeneous nuclear r 99.0 3.5E-10 1.2E-14 75.4 4.5 47 2-50 52-98 (118)
306 2cqi_A Nucleolysin TIAR; RNA r 99.0 9.4E-10 3.2E-14 71.3 6.4 48 2-51 47-94 (103)
307 1x5o_A RNA binding motif, sing 99.0 6.4E-10 2.2E-14 73.5 5.5 49 1-50 56-112 (114)
308 1rk8_A CG8781-PA, CG8781-PA pr 99.0 5.2E-10 1.8E-14 78.9 5.1 50 2-51 104-153 (165)
309 1wg5_A Heterogeneous nuclear r 99.0 4.7E-10 1.6E-14 73.0 4.6 47 2-50 48-94 (104)
310 1fjc_A Nucleolin RBD2, protein 99.0 9.6E-10 3.3E-14 70.3 5.7 45 7-51 48-92 (96)
311 1iqt_A AUF1, heterogeneous nuc 99.0 4.3E-10 1.5E-14 68.6 3.8 46 1-47 30-75 (75)
312 2cq3_A RNA-binding protein 9; 99.0 1.2E-09 4.2E-14 70.8 6.1 49 2-52 47-95 (103)
313 1s79_A Lupus LA protein; RRM, 99.0 4.3E-10 1.5E-14 73.1 3.8 46 1-48 42-87 (103)
314 2lmi_A GRSF-1, G-rich sequence 99.0 3.7E-10 1.3E-14 73.9 3.5 47 2-50 46-92 (107)
315 2cqg_A TDP-43, TAR DNA-binding 99.0 1.2E-09 4.2E-14 70.8 5.9 50 1-52 46-95 (103)
316 2krb_A Eukaryotic translation 98.9 3.5E-10 1.2E-14 70.2 2.8 40 6-45 41-81 (81)
317 3egn_A RNA-binding protein 40; 98.9 5.7E-10 1.9E-14 76.8 4.1 46 6-51 86-131 (143)
318 3ue2_A Poly(U)-binding-splicin 98.9 6.4E-10 2.2E-14 74.0 4.2 41 8-48 67-107 (118)
319 2jvr_A Nucleolar protein 3; RN 98.9 1.8E-09 6.1E-14 71.1 5.7 42 9-50 64-105 (111)
320 2err_A Ataxin-2-binding protei 98.9 1.3E-09 4.5E-14 71.5 5.0 47 2-50 61-107 (109)
321 2e5j_A Methenyltetrahydrofolat 98.9 1.4E-09 4.9E-14 69.7 4.6 44 8-51 52-95 (97)
322 1nu4_A U1A RNA binding domain; 98.9 9.7E-10 3.3E-14 70.4 3.6 44 8-51 47-90 (97)
323 1x4a_A Splicing factor, argini 98.9 3.3E-09 1.1E-13 69.5 6.0 45 7-51 56-100 (109)
324 3dxb_A Thioredoxin N-terminall 98.9 4.3E-09 1.5E-13 77.6 7.3 73 86-158 124-211 (222)
325 2hgm_A HNRPF protein, heteroge 98.9 9.5E-10 3.3E-14 74.0 3.3 47 1-49 74-120 (126)
326 2j8a_A Histone-lysine N-methyl 98.9 1.1E-09 3.9E-14 73.0 3.5 50 1-50 37-96 (136)
327 2diu_A KIAA0430 protein; struc 98.8 2.6E-09 9E-14 67.4 4.4 41 13-53 47-87 (96)
328 2f3j_A RNA and export factor b 98.8 2.6E-09 8.9E-14 76.2 4.6 48 2-50 120-167 (177)
329 1wg1_A KIAA1579 protein, homol 98.8 4.6E-09 1.6E-13 66.1 5.2 41 10-50 38-78 (88)
330 2dit_A HIV TAT specific factor 98.8 5.9E-09 2E-13 68.7 5.9 42 10-51 62-103 (112)
331 1x5p_A Negative elongation fac 98.8 6E-09 2.1E-13 66.8 5.8 44 9-52 46-89 (97)
332 2hgn_A Heterogeneous nuclear r 98.8 8E-10 2.7E-14 75.7 1.6 49 1-51 76-124 (139)
333 2cqh_A IGF-II mRNA-binding pro 98.8 5.1E-09 1.8E-13 66.5 5.1 43 10-52 42-85 (93)
334 2dha_A FLJ20171 protein; RRM d 98.8 1.6E-09 5.6E-14 72.6 2.8 46 2-49 59-104 (123)
335 3r27_A HnRNP L, heterogeneous 98.8 5E-09 1.7E-13 67.4 4.8 40 11-50 56-97 (100)
336 3pgw_S U1-70K; protein-RNA com 98.8 7.8E-09 2.7E-13 83.6 5.9 52 1-52 133-184 (437)
337 1sjq_A Polypyrimidine tract-bi 98.8 6.6E-09 2.2E-13 67.5 4.4 40 12-51 52-93 (105)
338 2la4_A Nuclear and cytoplasmic 98.8 6.4E-09 2.2E-13 67.1 4.4 40 10-49 61-100 (101)
339 1x4g_A Nucleolysin TIAR; struc 98.8 9.8E-09 3.3E-13 67.2 5.3 41 12-52 61-101 (109)
340 2cpd_A Apobec-1 stimulating pr 98.8 1.7E-08 5.6E-13 64.9 6.0 42 10-51 49-90 (99)
341 2xs2_A Deleted in azoospermia- 98.8 2.2E-09 7.5E-14 69.4 1.7 48 1-51 40-87 (102)
342 2cpj_A Non-POU domain-containi 98.7 1.1E-08 3.8E-13 65.7 5.0 42 10-51 49-90 (99)
343 2xnq_A Nuclear polyadenylated 98.7 1.8E-08 6.3E-13 64.5 5.8 40 11-50 56-95 (97)
344 2dnq_A RNA-binding protein 4B; 98.7 1.6E-08 5.3E-13 63.8 5.3 41 12-52 42-82 (90)
345 3s6e_A RNA-binding protein 39; 98.7 1.2E-08 4.2E-13 67.3 4.8 38 11-48 54-91 (114)
346 2bz2_A Negative elongation fac 98.7 1.7E-08 5.8E-13 67.4 5.3 42 10-51 71-112 (121)
347 1why_A Hypothetical protein ri 98.7 1.9E-08 6.7E-13 64.3 5.4 40 12-51 53-94 (97)
348 2jvo_A Nucleolar protein 3; nu 98.7 2.1E-08 7.3E-13 65.6 5.2 40 12-51 65-104 (108)
349 1x4c_A Splicing factor, argini 98.7 2.3E-08 7.7E-13 65.4 5.3 39 13-51 51-94 (108)
350 1sjr_A Polypyrimidine tract-bi 98.7 2E-08 6.8E-13 70.2 5.2 43 9-51 81-125 (164)
351 2cq1_A PTB-like protein L; RRM 98.7 2.6E-08 8.8E-13 64.4 5.4 40 12-51 51-92 (101)
352 1wf1_A RNA-binding protein RAL 98.7 1.9E-08 6.6E-13 65.9 4.8 41 11-51 61-101 (110)
353 2ytc_A PRE-mRNA-splicing facto 98.7 2.1E-08 7.2E-13 62.4 4.6 38 11-48 47-85 (85)
354 1x4f_A Matrin 3; structural ge 98.7 1.6E-08 5.3E-13 66.5 4.1 43 10-52 60-104 (112)
355 1x4d_A Matrin 3; structural ge 98.7 1.9E-08 6.4E-13 65.1 4.4 41 11-51 51-93 (102)
356 2dgt_A RNA-binding protein 30; 98.7 4.9E-08 1.7E-12 61.8 6.2 41 12-52 44-84 (92)
357 3zzy_A Polypyrimidine tract-bi 98.7 3.6E-08 1.2E-12 66.4 5.7 41 11-51 64-107 (130)
358 2dgu_A Heterogeneous nuclear r 98.7 4.1E-08 1.4E-12 63.5 5.8 42 12-53 45-86 (103)
359 2ad9_A Polypyrimidine tract-bi 98.7 2.4E-08 8.1E-13 66.3 4.6 41 11-51 66-108 (119)
360 2kvi_A Nuclear polyadenylated 98.7 2.1E-08 7.1E-13 64.1 4.1 41 11-51 44-84 (96)
361 1whx_A Hypothetical protein ri 98.6 2.2E-08 7.5E-13 65.8 4.2 41 10-50 44-84 (111)
362 2dnp_A RNA-binding protein 14; 98.6 5E-08 1.7E-12 61.5 5.7 40 12-51 43-82 (90)
363 2dnl_A Cytoplasmic polyadenyla 98.6 3.5E-08 1.2E-12 65.1 4.8 44 2-47 39-85 (114)
364 2i2y_A Fusion protein consists 98.6 4E-08 1.4E-12 68.0 5.3 40 11-50 109-148 (150)
365 2hzc_A Splicing factor U2AF 65 98.6 4E-08 1.4E-12 61.4 4.5 36 10-46 51-86 (87)
366 1wex_A Hypothetical protein (r 98.6 3.3E-08 1.1E-12 64.2 4.2 41 11-51 50-92 (104)
367 2e44_A Insulin-like growth fac 98.6 6.3E-08 2.2E-12 61.7 5.4 38 13-50 55-92 (96)
368 2cq2_A Hypothetical protein LO 98.6 3.7E-08 1.3E-12 64.8 4.4 40 11-50 62-106 (114)
369 2e5g_A U6 snRNA-specific termi 98.6 4.6E-08 1.6E-12 62.2 4.3 46 2-51 38-83 (94)
370 2d9o_A DNAJ (HSP40) homolog, s 98.6 7.4E-08 2.5E-12 62.0 5.0 41 9-51 51-91 (100)
371 1wey_A Calcipressin 1; structu 98.6 5.9E-07 2E-11 57.4 8.7 76 85-160 4-84 (104)
372 2e5i_A Heterogeneous nuclear r 98.5 1.1E-07 3.9E-12 63.5 5.2 39 13-51 62-103 (124)
373 3beg_B Splicing factor, argini 98.5 1.7E-07 5.7E-12 61.9 4.8 37 13-49 52-93 (115)
374 3u1l_A PRE-mRNA-splicing facto 98.3 4.1E-07 1.4E-11 67.6 4.8 41 10-50 177-229 (240)
375 2dnr_A Synaptojanin-1; RRM dom 98.3 6.8E-07 2.3E-11 55.8 4.1 35 15-50 52-86 (91)
376 3d2w_A TAR DNA-binding protein 98.2 2.3E-06 7.8E-11 53.7 4.7 37 11-51 47-85 (89)
377 1ufw_A Synaptojanin 2; RNP dom 98.1 2.2E-06 7.7E-11 53.8 3.8 33 15-48 61-93 (95)
378 1wf0_A TDP-43, TAR DNA-binding 98.0 2.2E-06 7.7E-11 53.5 2.2 40 11-52 41-80 (88)
379 1whv_A Poly(A)-specific ribonu 97.9 8.7E-05 3E-09 46.6 8.2 58 83-143 13-70 (100)
380 2dhx_A Poly (ADP-ribose) polym 97.9 0.00037 1.3E-08 44.3 11.1 75 84-161 6-85 (104)
381 3tht_A Alkylated DNA repair pr 97.9 1.2E-05 4E-10 62.9 5.2 38 11-48 55-97 (345)
382 1wwh_A Nucleoporin 35, nucleop 97.6 0.00031 1.1E-08 46.0 7.8 74 83-158 21-95 (119)
383 3ctr_A Poly(A)-specific ribonu 97.6 0.00015 5.2E-09 45.6 5.2 54 87-143 7-60 (101)
384 1uw4_A UPF3X; nonsense mediate 97.4 0.0012 4.1E-08 41.3 7.6 62 87-148 2-71 (91)
385 3p3d_A Nucleoporin 53; structu 96.8 0.0017 5.9E-08 43.1 4.6 71 86-158 7-97 (132)
386 2l08_A Regulator of nonsense t 96.6 0.0092 3.1E-07 37.5 6.6 73 85-157 8-93 (97)
387 3pq1_A Poly(A) RNA polymerase; 96.5 0.0021 7.2E-08 52.0 3.9 56 84-140 51-107 (464)
388 2l9w_A U4/U6 snRNA-associated- 96.1 0.01 3.6E-07 38.1 4.9 35 13-47 63-97 (117)
389 1owx_A Lupus LA protein, SS-B, 95.5 0.022 7.4E-07 37.5 4.7 35 14-48 57-94 (121)
390 1wey_A Calcipressin 1; structu 92.8 0.17 5.8E-06 32.1 4.3 36 13-48 47-82 (104)
391 2dhx_A Poly (ADP-ribose) polym 92.6 0.21 7.1E-06 31.6 4.5 35 13-48 48-82 (104)
392 3d45_A Poly(A)-specific ribonu 91.7 0.97 3.3E-05 37.1 8.7 55 86-143 440-494 (507)
393 3p3d_A Nucleoporin 53; structu 82.5 1.5 5.3E-05 28.9 3.7 36 12-48 62-97 (132)
394 1wwh_A Nucleoporin 35, nucleop 81.2 1.6 5.5E-05 28.3 3.4 35 12-47 59-94 (119)
395 4eyt_A Telomerase associated p 59.2 28 0.00094 21.2 7.9 72 84-157 10-88 (129)
396 1whv_A Poly(A)-specific ribonu 58.5 9.4 0.00032 23.8 3.0 21 13-33 50-70 (100)
397 1uw4_A UPF3X; nonsense mediate 55.8 14 0.00048 22.6 3.5 26 13-38 46-71 (91)
398 2g0c_A ATP-dependent RNA helic 53.4 11 0.00038 21.7 2.7 35 13-48 41-75 (76)
399 2v94_A RPS24, 30S ribosomal pr 36.2 26 0.0009 22.1 2.5 19 8-27 70-88 (107)
400 1xn9_A 30S ribosomal protein S 35.7 25 0.00085 22.0 2.3 21 8-29 61-81 (101)
401 1ywx_A 30S ribosomal protein S 35.1 26 0.00088 22.0 2.3 19 8-27 61-79 (102)
402 2g1d_A 30S ribosomal protein S 32.6 23 0.00078 22.0 1.8 20 8-28 62-81 (98)
403 1igq_A Transcriptional repress 26.9 35 0.0012 19.2 1.7 20 1-21 23-42 (62)
404 2k5n_A Putative cold-shock pro 24.7 30 0.001 20.1 1.3 12 10-21 12-23 (74)
405 2xzm_P RPS24E; ribosome, trans 24.5 52 0.0018 22.1 2.5 19 8-27 64-82 (149)
406 2kcm_A Cold shock domain famil 23.8 30 0.001 20.2 1.1 12 10-21 10-21 (74)
407 1c9o_A CSPB, cold-shock protei 23.4 31 0.0011 19.4 1.1 11 10-20 11-21 (66)
408 3cam_A Cold-shock domain famil 23.4 34 0.0011 19.4 1.3 11 10-20 11-21 (67)
409 3a0j_A Cold shock protein; OB- 22.3 33 0.0011 19.8 1.1 11 10-20 11-21 (73)
410 1h95_A CSD, Y-box binding prot 22.1 36 0.0012 20.0 1.3 11 10-20 18-28 (79)
411 3ulj_A LIN28B, DNA-binding pro 22.0 36 0.0012 20.7 1.3 10 10-19 18-27 (90)
412 1g6p_A Cold shock protein TMCS 21.8 35 0.0012 19.2 1.1 11 10-20 10-20 (66)
413 2hpu_A NOSL protein; alpha bet 21.2 69 0.0023 22.1 2.7 23 12-34 109-132 (175)
414 3u5c_Y RP50, 40S ribosomal pro 20.7 68 0.0023 21.1 2.5 19 8-27 66-84 (135)
415 3lpe_A Putative transcription 20.7 75 0.0026 19.1 2.6 26 11-36 49-74 (92)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=4.5e-28 Score=179.23 Aligned_cols=133 Identities=31% Similarity=0.482 Sum_probs=118.6
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGS 80 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (192)
+|++|+.+|+++|||||+|.+.++|++|++.+++..+.|+.|++.++.......
T Consensus 46 ~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~-------------------------- 99 (213)
T 4f02_A 46 RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR-------------------------- 99 (213)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHH--------------------------
T ss_pred EEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccccccc--------------------------
Confidence 478899999999999999999999999999999999999999999876542211
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
......|||+|||+.+++++|.++|++||.|..+.++. ++|+|||+|.+.++|.+|++.|||..++|++|+|.+
T Consensus 100 --~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~ 177 (213)
T 4f02_A 100 --KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 177 (213)
T ss_dssp --HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred --ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 12345799999999999999999999999999999876 368999999999999999999999999999999999
Q ss_pred cCCCC
Q 037126 157 GHNPG 161 (192)
Q Consensus 157 a~~~~ 161 (192)
++++.
T Consensus 178 a~~~~ 182 (213)
T 4f02_A 178 FKSRK 182 (213)
T ss_dssp CCCHH
T ss_pred cCCCc
Confidence 97543
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.9e-27 Score=168.56 Aligned_cols=128 Identities=26% Similarity=0.514 Sum_probs=114.5
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSD 81 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (192)
|++++ +|.++|||||+|.+.++|++|++.++|..+.|++|.|.++.... ..
T Consensus 32 i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~----------------------------~~ 82 (166)
T 3md3_A 32 IMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ----------------------------QS 82 (166)
T ss_dssp EECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC----------------------------CC
T ss_pred EEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC----------------------------CC
Confidence 56675 58899999999999999999999999999999999999986543 12
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
...+..+|||+|||..+++++|.++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|++|+|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 3356789999999999999999999999999999998753 5899999999999999999999999999999999
Q ss_pred ecC
Q 037126 156 SGH 158 (192)
Q Consensus 156 ~a~ 158 (192)
||+
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 996
No 3
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=1.5e-27 Score=176.26 Aligned_cols=144 Identities=22% Similarity=0.374 Sum_probs=119.0
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGS 80 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (192)
+|++|+.+|.++|||||+|.+.++|++|++.|++..+.|+.|.|.++............. .
T Consensus 59 ~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~-------------------~ 119 (216)
T 2qfj_A 59 DMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQL-------------------A 119 (216)
T ss_dssp EECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHH-------------------H
T ss_pred EEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhh-------------------h
Confidence 356788899999999999999999999999999999999999999876553221110000 0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|+.|+|
T Consensus 120 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V 199 (216)
T 2qfj_A 120 EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 199 (216)
T ss_dssp HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEE
Confidence 11245689999999999999999999999999999998864 689999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 037126 155 SSGHNPGNK 163 (192)
Q Consensus 155 ~~a~~~~~~ 163 (192)
.|++++...
T Consensus 200 ~~a~~~~~~ 208 (216)
T 2qfj_A 200 GKAVTPPMP 208 (216)
T ss_dssp EECSSCSST
T ss_pred EEecCCCCC
Confidence 999866444
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=2.3e-27 Score=168.68 Aligned_cols=127 Identities=24% Similarity=0.473 Sum_probs=115.0
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGS 80 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (192)
++++++.+|.++|||||+|.+.++|++|++.++|..+.|++|.|.++.+...
T Consensus 34 ~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~---------------------------- 85 (168)
T 1b7f_A 34 RIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE---------------------------- 85 (168)
T ss_dssp ECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSS----------------------------
T ss_pred EEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcc----------------------------
Confidence 3677888999999999999999999999999999999999999999865421
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCC--eEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGK--QTV 152 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g--~~l 152 (192)
..+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++| ++|
T Consensus 86 --~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l 163 (168)
T 1b7f_A 86 --SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPL 163 (168)
T ss_dssp --TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCC
T ss_pred --cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEE
Confidence 245678999999999999999999999999999998764 4899999999999999999999999987 999
Q ss_pred EEEec
Q 037126 153 RLSSG 157 (192)
Q Consensus 153 ~v~~a 157 (192)
+|.||
T Consensus 164 ~V~~A 168 (168)
T 1b7f_A 164 SVRLA 168 (168)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99986
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=5.1e-27 Score=166.52 Aligned_cols=126 Identities=29% Similarity=0.580 Sum_probs=113.3
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSD 81 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (192)
+++++.+|.++|||||+|.+.++|++|++.|+|..+.|++|.|.++.+...
T Consensus 34 ~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~----------------------------- 84 (167)
T 1fxl_A 34 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA----------------------------- 84 (167)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCG-----------------------------
T ss_pred EEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcc-----------------------------
Confidence 567888999999999999999999999999999999999999999865421
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeE--EE
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQT--VR 153 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~--l~ 153 (192)
....+.|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|+. |+
T Consensus 85 -~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~ 163 (167)
T 1fxl_A 85 -SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 163 (167)
T ss_dssp -GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred -cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceE
Confidence 134578999999999999999999999999999988753 589999999999999999999999999975 88
Q ss_pred EEec
Q 037126 154 LSSG 157 (192)
Q Consensus 154 v~~a 157 (192)
|.||
T Consensus 164 v~~A 167 (167)
T 1fxl_A 164 VKFA 167 (167)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8886
No 6
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=3.6e-27 Score=168.93 Aligned_cols=129 Identities=22% Similarity=0.408 Sum_probs=114.1
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSD 81 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (192)
++++..+|.++|||||+|.+.++|++|+ .|+|..+.|++|.|.++..+.. .
T Consensus 44 ~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~~~----------------------------~ 94 (175)
T 1fje_B 44 AVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDS----------------------------K 94 (175)
T ss_dssp CCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCSSC----------------------------S
T ss_pred EEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCccc----------------------------c
Confidence 5677778999999999999999999999 5999999999999999875432 1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEe--CCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIP--VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHN 159 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 159 (192)
...+.++|||+|||..+++++|+++|++||.|..+ .. .++|+|||+|.+.++|.+|+..|+|..++|+.|+|.|+++
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 23457899999999999999999999999998877 22 2479999999999999999999999999999999999975
Q ss_pred C
Q 037126 160 P 160 (192)
Q Consensus 160 ~ 160 (192)
+
T Consensus 174 k 174 (175)
T 1fje_B 174 K 174 (175)
T ss_dssp C
T ss_pred C
Confidence 4
No 7
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.95 E-value=7.8e-27 Score=169.94 Aligned_cols=137 Identities=22% Similarity=0.397 Sum_probs=112.1
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGS 80 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (192)
+|++|+.+|.++|||||+|.+.++|++|++. ++..+.|+.|.|.++........ .
T Consensus 44 ~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~~------------------------~ 98 (196)
T 1l3k_A 44 VVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQR------------------------P 98 (196)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC-------------------------------
T ss_pred EEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCcccccc------------------------c
Confidence 3678888999999999999999999999965 99999999999999865432210 1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
......++|||+|||..+++++|.++|+.||.|..+.+..+ +|+|||+|.+.++|.+|+.. +|..++|+.|.|
T Consensus 99 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v 177 (196)
T 1l3k_A 99 GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEV 177 (196)
T ss_dssp ----CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEE
T ss_pred ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEE
Confidence 22345689999999999999999999999999999988753 58999999999999999986 899999999999
Q ss_pred EecCCCCCC
Q 037126 155 SSGHNPGNK 163 (192)
Q Consensus 155 ~~a~~~~~~ 163 (192)
.++.++...
T Consensus 178 ~~a~~k~~~ 186 (196)
T 1l3k_A 178 RKALSKQEM 186 (196)
T ss_dssp EECC-----
T ss_pred EecCChhHh
Confidence 999866554
No 8
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=1.4e-26 Score=168.84 Aligned_cols=149 Identities=15% Similarity=0.339 Sum_probs=119.0
Q ss_pred cccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCC
Q 037126 3 IIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDG 82 (192)
Q Consensus 3 ~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (192)
+++..++.++|||||+|.+.++|++|+ .|+|..+.|++|.|.++........... . ...... .......
T Consensus 42 v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~---~-----~~~~~~--~~~~~~~ 110 (198)
T 2yh0_A 42 VLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSE---N-----PSVYVP--GVVSTVV 110 (198)
T ss_dssp EEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCCCCCCCSSS---C-----SSCCCT--TSSCCCS
T ss_pred eEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCcC---C-----CcCCCC--CCccCCC
Confidence 444456789999999999999999999 8999999999999998866533211100 0 000000 0011233
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
..+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|+.|+|.|
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467799999999999999999999999999999998764 68999999999999999999999999999999999
Q ss_pred cCCCCC
Q 037126 157 GHNPGN 162 (192)
Q Consensus 157 a~~~~~ 162 (192)
+++...
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 986643
No 9
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=1.6e-25 Score=171.94 Aligned_cols=151 Identities=23% Similarity=0.360 Sum_probs=115.5
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhh--cch-----------------hhhhcc-
Q 037126 8 TDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQ--CSS-----------------QALVLA- 67 (192)
Q Consensus 8 tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~--~~~-----------------~~~~~~- 67 (192)
+|.++|||||+|.+.++|++|++.|||..+.|+.|+|.++........... ... ......
T Consensus 48 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (282)
T 3pgw_A 48 SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQG 127 (282)
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccC
Confidence 789999999999999999999999999999999999999865542100000 000 000000
Q ss_pred -C---------CC----------------------------------CCCC-----------------CCCCCCCCCCCC
Q 037126 68 -G---------GP----------------------------------ASNG-----------------TRVQGSDGESNN 86 (192)
Q Consensus 68 -~---------~~----------------------------------~~~~-----------------~~~~~~~~~~~~ 86 (192)
. +. .... ..........+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (282)
T 3pgw_A 128 GGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPN 207 (282)
T ss_pred cCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCC
Confidence 0 00 0000 000001234567
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCC-ceEEEEeCCHHHHHHHHHHhcCCeeC-CeEEEEEecC
Q 037126 87 ATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGK-GCGFVQFANRKDAEVALQKLQGTAIG-KQTVRLSSGH 158 (192)
Q Consensus 87 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-g~afv~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~a~ 158 (192)
++|||+|||..+++++|+++|++||.|..+.+..++ |+|||+|.+.++|.+|+..|+|..++ |+.|+|.|++
T Consensus 208 ~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 208 HILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 899999999999999999999999999999999876 99999999999999999999999999 9999999996
No 10
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=2.4e-26 Score=164.03 Aligned_cols=124 Identities=18% Similarity=0.442 Sum_probs=110.2
Q ss_pred ccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCC
Q 037126 4 IDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGE 83 (192)
Q Consensus 4 ~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (192)
.+..++.++|||||+|.+.++|++|+ .++|..+.|++|.|.++..... .
T Consensus 43 ~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~------------------------------~ 91 (172)
T 2g4b_A 43 LAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQP------------------------------L 91 (172)
T ss_dssp EEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCC------------------------------C
T ss_pred eeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCC------------------------------C
Confidence 33345778999999999999999999 9999999999999998654321 1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
....+|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|++|.|.||
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 33688999999999999999999999999999998764 589999999999999999999999999999999997
Q ss_pred C
Q 037126 158 H 158 (192)
Q Consensus 158 ~ 158 (192)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 11
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=1.7e-25 Score=167.13 Aligned_cols=149 Identities=20% Similarity=0.260 Sum_probs=113.7
Q ss_pred ceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcc-hhhhhccCC-C---CCCCCCCCCCCCCCCC
Q 037126 12 KGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCS-SQALVLAGG-P---ASNGTRVQGSDGESNN 86 (192)
Q Consensus 12 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~-~~~~~~~~~-~---~~~~~~~~~~~~~~~~ 86 (192)
+|||||+|.+.++|++|++.|+|..+.|++|.|.++............. ......... . ..............+.
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 151 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCC
Confidence 8999999999999999999999999999999999987553221100000 000000000 0 0000000012234567
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeC-CCceEEEEeCCHHHHHHHHHHhcCCeeC-CeEEEEEecCCC
Q 037126 87 ATIFVGALDSDVSDKDLREPFSHFG-EILSVKIPV-GKGCGFVQFANRKDAEVALQKLQGTAIG-KQTVRLSSGHNP 160 (192)
Q Consensus 87 ~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~a~~~ 160 (192)
++|||+|||..+++++|+++|++|| .|..+.+++ ++|+|||+|.+.++|.+|+..|+|..++ |++|+|.|++++
T Consensus 152 ~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 152 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999999999999999999999 999999955 7899999999999999999999999999 999999999864
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.94 E-value=4.9e-26 Score=162.70 Aligned_cols=129 Identities=23% Similarity=0.465 Sum_probs=110.8
Q ss_pred CccccCCCC--CcceEEEEEecCHHHHHHHHHHhcCceeC---CceeEEeecCCCCccchhhhcchhhhhccCCCCCCCC
Q 037126 1 KVIIDSNTD--RTKGYGFVRFGDENERSRAMIEMNGVYCS---SRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGT 75 (192)
Q Consensus 1 kv~~d~~tg--~s~g~afV~f~~~~~A~~A~~~l~~~~~~---g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (192)
+|++++.+| .++|||||+|.+.++|++|++.+++..+. ++++.+.++....
T Consensus 34 ~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~------------------------ 89 (175)
T 3nmr_A 34 NVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEK------------------------ 89 (175)
T ss_dssp EEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGC------------------------
T ss_pred EEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccc------------------------
Confidence 356777776 89999999999999999999999998875 6777777764331
Q ss_pred CCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-----CceEEEEeCCHHHHHHHHHHhcCCeeC--
Q 037126 76 RVQGSDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIG-- 148 (192)
Q Consensus 76 ~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~-- 148 (192)
......++|||+|||..+++++|+++|++||.|..+.+.++ +|+|||+|.+.++|.+|+..|||..+.
T Consensus 90 -----~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 164 (175)
T 3nmr_A 90 -----NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG 164 (175)
T ss_dssp -----CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTT
T ss_pred -----cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 12245678999999999999999999999999999998864 689999999999999999999998776
Q ss_pred -CeEEEEEecC
Q 037126 149 -KQTVRLSSGH 158 (192)
Q Consensus 149 -g~~l~v~~a~ 158 (192)
+++|.|.||.
T Consensus 165 ~~~~l~V~~ad 175 (175)
T 3nmr_A 165 CSSPMVVKFAD 175 (175)
T ss_dssp CSSCCEEEECC
T ss_pred CCCCeEEEecC
Confidence 4899999984
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=1.1e-25 Score=173.07 Aligned_cols=134 Identities=19% Similarity=0.290 Sum_probs=119.6
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSD 81 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (192)
|++|+.+|.++|||||+|.+.++|.+|++.++|..+.|++|.|.++.++.. ..
T Consensus 127 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~---------------------------~~ 179 (284)
T 3smz_A 127 LVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL---------------------------TP 179 (284)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC---------------------------CT
T ss_pred EEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC---------------------------Cc
Confidence 577888999999999999999999999999999999999999999865321 12
Q ss_pred CCCCCceEEEcCCCCCC-CHHHHHHHhccCCCeEEEEEeCC-----CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 82 GESNNATIFVGALDSDV-SDKDLREPFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~-~~~~l~~~f~~~g~i~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
.....++|||+|||..+ ++++|.++|+.||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|++|.|.
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 23567899999999995 99999999999999999998764 7899999999999999999999999999999999
Q ss_pred ecCCCCC
Q 037126 156 SGHNPGN 162 (192)
Q Consensus 156 ~a~~~~~ 162 (192)
|+++...
T Consensus 260 ~a~~~~~ 266 (284)
T 3smz_A 260 FCAPGPP 266 (284)
T ss_dssp ECCSSSC
T ss_pred EecCCCc
Confidence 9986544
No 14
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=1.6e-25 Score=163.41 Aligned_cols=149 Identities=20% Similarity=0.260 Sum_probs=113.8
Q ss_pred ceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcch-hhhhccCC-C---CCCCCCCCCCCCCCCC
Q 037126 12 KGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSS-QALVLAGG-P---ASNGTRVQGSDGESNN 86 (192)
Q Consensus 12 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~-~~~~~~~~-~---~~~~~~~~~~~~~~~~ 86 (192)
+|||||+|.+.++|++|++.|+|..+.|++|.|.++.............. ........ . ..............+.
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 120 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 120 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCc
Confidence 89999999999999999999999999999999999875532211100000 00000000 0 0000001112234568
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeC-CCceEEEEeCCHHHHHHHHHHhcCCeeC-CeEEEEEecCCC
Q 037126 87 ATIFVGALDSDVSDKDLREPFSHFG-EILSVKIPV-GKGCGFVQFANRKDAEVALQKLQGTAIG-KQTVRLSSGHNP 160 (192)
Q Consensus 87 ~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~a~~~ 160 (192)
++|||+|||..+++++|+++|++|| .|..+.+.+ ++|+|||+|.+.++|.+|+..|+|..++ |++|+|.|++++
T Consensus 121 ~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 121 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 9999999999999999999999999 999999965 7899999999999999999999999999 999999999864
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.93 E-value=2.8e-26 Score=162.91 Aligned_cols=127 Identities=21% Similarity=0.449 Sum_probs=111.7
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGS 80 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (192)
+|++|+.+|.++|||||+|.+.++|++|++. +..+.|+.|.|.++.++...
T Consensus 34 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~~~~--------------------------- 84 (167)
T 2cjk_A 34 KIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPRDEQ--------------------------- 84 (167)
T ss_dssp ECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCHHHH---------------------------
T ss_pred EEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccchhhc---------------------------
Confidence 3678888999999999999999999999974 67899999999987543211
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
.+..+|||+|||..+++++|.++|++||.|..+.+..+ +|+|||+|.+.++|.+|+. ++|..++|++|+|
T Consensus 85 ---~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V 160 (167)
T 2cjk_A 85 ---DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEI 160 (167)
T ss_dssp ---HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEE
T ss_pred ---cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEE
Confidence 23468999999999999999999999999999998763 5899999999999999998 8999999999999
Q ss_pred EecCCC
Q 037126 155 SSGHNP 160 (192)
Q Consensus 155 ~~a~~~ 160 (192)
.|++++
T Consensus 161 ~~a~pk 166 (167)
T 2cjk_A 161 KRAEPR 166 (167)
T ss_dssp EECCCC
T ss_pred eecCCC
Confidence 999864
No 16
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=7.4e-25 Score=169.00 Aligned_cols=134 Identities=20% Similarity=0.432 Sum_probs=109.8
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSD 81 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (192)
|++++ .|.++|||||+|.+.++|.+|++.|+|..+.|++|.|.++.+....... ..
T Consensus 150 i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~-----------------------~~ 205 (292)
T 2ghp_A 150 LPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT-----------------------DS 205 (292)
T ss_dssp CC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-------------------------------
T ss_pred EEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc-----------------------cc
Confidence 45565 4889999999999999999999999999999999999998765332110 12
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeCC-------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 82 GESNNATIFVGALDSD-VSDKDLREPFSHFGEILSVKIPVG-------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~-------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
...+..+|||+|||.. +++++|.++|++||.|..+.++.+ +|+|||+|.+.++|.+|+ .|+|..++|+.|+
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3456789999999999 999999999999999999998753 589999999999999999 9999999999999
Q ss_pred EEecCCC
Q 037126 154 LSSGHNP 160 (192)
Q Consensus 154 v~~a~~~ 160 (192)
|.|++++
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999864
No 17
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=1.8e-24 Score=152.66 Aligned_cols=144 Identities=19% Similarity=0.271 Sum_probs=107.5
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGS 80 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (192)
||+++. ..++|||||+|.+.++|++|++.+++....+..+.+.......... .........
T Consensus 4 kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~ 64 (158)
T 2kn4_A 4 KLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVT-----------------EGSHHHHHH 64 (158)
T ss_dssp EEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEE-----------------CCCCCSSCC
T ss_pred EEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccc-----------------ccccccccc
Confidence 467775 3699999999999999999999888644322222222111000000 000000113
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
.......+|||+|||..+++++|+++|+.||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|++|+|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 33456789999999999999999999999999999998763 689999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 037126 155 SSGHNPGNK 163 (192)
Q Consensus 155 ~~a~~~~~~ 163 (192)
.++++....
T Consensus 145 ~~a~~~~~~ 153 (158)
T 2kn4_A 145 QMARYGRPP 153 (158)
T ss_dssp EEECCSSCC
T ss_pred EECCCCCCC
Confidence 999865433
No 18
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.92 E-value=1.9e-24 Score=158.73 Aligned_cols=147 Identities=16% Similarity=0.153 Sum_probs=106.7
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhh-cchhhh--hccCCCCCCCCC----CCCCCCC
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQ-CSSQAL--VLAGGPASNGTR----VQGSDGE 83 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~----~~~~~~~ 83 (192)
++|||||+|.+.++|+.|++.|||..+.|++|+|.++..+........ ...... ............ .......
T Consensus 41 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 120 (205)
T 3tyt_A 41 KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQ 120 (205)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccC
Confidence 589999999999999999999999999999999999865432110000 000000 000000000000 0001123
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCe--EEEEEeCC----CceEEEEeCCHHHHHHHHHHhcCCeeCCe----EEE
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEI--LSVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAIGKQ----TVR 153 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i--~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~g~----~l~ 153 (192)
.+.++|||+|||+.+++++|+++|++||.| ..+.++.+ +|+|||+|.+.++|.+|+..|||..++|. ++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 567899999999999999999999999998 89988764 48999999999999999999999999877 566
Q ss_pred EEec
Q 037126 154 LSSG 157 (192)
Q Consensus 154 v~~a 157 (192)
|.++
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 6654
No 19
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.92 E-value=7.4e-25 Score=153.46 Aligned_cols=138 Identities=20% Similarity=0.265 Sum_probs=114.1
Q ss_pred CCcceEEEEEecCHHHHHHHHHHh-cCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCCCCc
Q 037126 9 DRTKGYGFVRFGDENERSRAMIEM-NGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNA 87 (192)
Q Consensus 9 g~s~g~afV~f~~~~~A~~A~~~l-~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (192)
...+|+++|+|.+.++|++|++.+ ||..+.| .+.+.++..+...... ..............+.+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 74 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEG--------------SHHHHHHMHRDSCPLDC 74 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECS--------------SSSCCCCSCSSSSTTSC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccc--------------cccccccccccCCCCCC
Confidence 467899999999999999999999 9999999 9999877543211000 00000111134456789
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 037126 88 TIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPG 161 (192)
Q Consensus 88 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 161 (192)
+|||+|||+.+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|+..|+|..++|++|+|.|++++.
T Consensus 75 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 75 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp EEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999999999999999999886 8999999999999999999999999999999999998653
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.91 E-value=2.5e-23 Score=159.79 Aligned_cols=117 Identities=21% Similarity=0.356 Sum_probs=107.5
Q ss_pred CCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCCCCce
Q 037126 9 DRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNAT 88 (192)
Q Consensus 9 g~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (192)
+.++|||||+|.+.++|++|++.|+|..+.|++|.|.++. ...+
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~------------------------------------~~~~ 97 (284)
T 3smz_A 54 DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP------------------------------------TDAL 97 (284)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC------------------------------------CSCE
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC------------------------------------CCCE
Confidence 6789999999999999999999999999999999999842 2368
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 037126 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPG 161 (192)
Q Consensus 89 l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 161 (192)
|||+|||..+++++|.++|+.||.|..+.++.+ +|+|||+|.+.++|.+|+..|+|..++|+.|.|.++.+..
T Consensus 98 l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 98 LCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred EEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 999999999999999999999999999988753 5899999999999999999999999999999999997543
No 21
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.90 E-value=7.2e-23 Score=157.83 Aligned_cols=122 Identities=12% Similarity=0.262 Sum_probs=107.1
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSD 81 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (192)
|++|+. .++|||||+|.+.++|++|+ .++|..+.|++|.|.++
T Consensus 73 i~~~~~--~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~---------------------------------- 115 (292)
T 2ghp_A 73 VADSLK--KNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSHL---------------------------------- 115 (292)
T ss_dssp EEECTT--SSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEEC----------------------------------
T ss_pred EEECCC--CCcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEEC----------------------------------
Confidence 455652 36899999999999999999 59999999999999984
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFG-EILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
..++|||+|||..+++++|.++|+.|| .|..+.++. .+|+|||+|.+.++|.+|+..|+|..++|+.|.|.
T Consensus 116 ---~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 192 (292)
T 2ghp_A 116 ---TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTK 192 (292)
T ss_dssp ---CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ---CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 256899999999999999999999999 999999876 47999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 037126 156 SGHNPGNK 163 (192)
Q Consensus 156 ~a~~~~~~ 163 (192)
++.+....
T Consensus 193 ~a~~~~~~ 200 (292)
T 2ghp_A 193 VSNPLEKS 200 (292)
T ss_dssp ECCCC---
T ss_pred ECCCCccc
Confidence 99865443
No 22
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.89 E-value=2.2e-22 Score=152.94 Aligned_cols=117 Identities=31% Similarity=0.486 Sum_probs=105.1
Q ss_pred CCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCCCCce
Q 037126 9 DRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNAT 88 (192)
Q Consensus 9 g~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (192)
++++|||||+|.+.++|+.|+..++|..+.|+.|.|.++.+ ..+
T Consensus 55 ~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~------------------------------------~~~ 98 (261)
T 3sde_A 55 NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH------------------------------------GAA 98 (261)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC------------------------------------SSE
T ss_pred eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc------------------------------------CCc
Confidence 45689999999999999999999999999999999999742 457
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-----CceEEEEeCCHHHHHHHHHHh-cCCeeC---CeEEEEEecCC
Q 037126 89 IFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKL-QGTAIG---KQTVRLSSGHN 159 (192)
Q Consensus 89 l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l-~g~~~~---g~~l~v~~a~~ 159 (192)
|||+|||..+++++|.++|+.||.|..+.++.+ +|+|||+|.+.++|.+|+..| +|..+. +++|.|.++..
T Consensus 99 l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 99 LTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred ccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 999999999999999999999999999998754 689999999999999999999 555554 99999999975
Q ss_pred CC
Q 037126 160 PG 161 (192)
Q Consensus 160 ~~ 161 (192)
..
T Consensus 179 ~~ 180 (261)
T 3sde_A 179 FD 180 (261)
T ss_dssp EE
T ss_pred cC
Confidence 54
No 23
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.2e-19 Score=117.00 Aligned_cols=84 Identities=13% Similarity=0.217 Sum_probs=76.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHh--cCCeeCCeEEEEEecC
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKL--QGTAIGKQTVRLSSGH 158 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l--~g~~~~g~~l~v~~a~ 158 (192)
....+.++|||+|||+.+++++|+++|++||.|..+.+++++|+|||+|.+.++|.+|+..| ++..+.|++|.|.|++
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 34467789999999999999999999999999999999999999999999999999999987 4678999999999998
Q ss_pred CCCCCC
Q 037126 159 NPGNKQ 164 (192)
Q Consensus 159 ~~~~~~ 164 (192)
++..+.
T Consensus 90 ~~~~~~ 95 (101)
T 2cq1_A 90 HKELKT 95 (101)
T ss_dssp CSSCCC
T ss_pred cccCcC
Confidence 665554
No 24
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.83 E-value=7.2e-20 Score=118.39 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=74.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCe--eCCeEEEEEecC
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTA--IGKQTVRLSSGH 158 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~--~~g~~l~v~~a~ 158 (192)
....++++|||+|||..+++++|+++|++||.|..+.++++||+|||+|.+.++|.+|+..|++.. +.|++|.|.|++
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 344678999999999999999999999999999999999999999999999999999999999875 789999999998
Q ss_pred CCC
Q 037126 159 NPG 161 (192)
Q Consensus 159 ~~~ 161 (192)
++.
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 653
No 25
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.7e-20 Score=119.66 Aligned_cols=82 Identities=15% Similarity=0.226 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhc--CCeeCCeEEEEEecCCC
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ--GTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--g~~~~g~~l~v~~a~~~ 160 (192)
..+.++|||+|||+.+++++|+++|++||.|..+.+++++|+|||+|.+.++|.+|+..|+ +..++|++|.|.|++++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 3567899999999999999999999999999999999999999999999999999999886 47899999999999866
Q ss_pred CCCC
Q 037126 161 GNKQ 164 (192)
Q Consensus 161 ~~~~ 164 (192)
....
T Consensus 93 ~~~~ 96 (105)
T 1sjq_A 93 ELKT 96 (105)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 5543
No 26
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=1.1e-19 Score=121.52 Aligned_cols=99 Identities=29% Similarity=0.479 Sum_probs=71.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC----CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 160 (192)
....|||+|||+.+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|+..|+|..++|++|+|.++++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 3567999999999999999999999999999998864 689999999999999999999999999999999999865
Q ss_pred CCCCCCCCccchhccccCccccCCCC
Q 037126 161 GNKQWRGDHINLIALAQDATYVNNRN 186 (192)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (192)
....... .......+..|+.|++
T Consensus 84 ~~~~~~~---~~~~~~~~~lyv~Nl~ 106 (115)
T 4f25_A 84 KEREAEL---GARAKEFTNVYIKNFG 106 (115)
T ss_dssp CC------------------------
T ss_pred ccccccc---ccccCCCCceEeCCCC
Confidence 4433211 1122233456776654
No 27
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=118.00 Aligned_cols=76 Identities=30% Similarity=0.513 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
.....|||+|||..+++++|+++|++||.|..+.++++ +|+|||+|.+.++|.+|++.|||..++|++|+|.||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 44678999999999999999999999999999998753 589999999999999999999999999999999999
Q ss_pred CC
Q 037126 158 HN 159 (192)
Q Consensus 158 ~~ 159 (192)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 28
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.6e-19 Score=116.68 Aligned_cols=83 Identities=22% Similarity=0.195 Sum_probs=75.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCC--eeCCeEEEEEecC
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT--AIGKQTVRLSSGH 158 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~--~~~g~~l~v~~a~ 158 (192)
....+.++|||+|||+.+++++|+++|++||.|..+.+++++|+|||+|.+.++|.+|+..|++. .++|++|.|.|++
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 34467799999999999999999999999999999999999999999999999999999988765 5899999999998
Q ss_pred CCCCC
Q 037126 159 NPGNK 163 (192)
Q Consensus 159 ~~~~~ 163 (192)
.+..+
T Consensus 90 ~~~~~ 94 (104)
T 1wex_A 90 SKRIT 94 (104)
T ss_dssp SSSCC
T ss_pred Ccccc
Confidence 65544
No 29
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.8e-19 Score=116.49 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=72.6
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCC--eeCCeEEEEEecCC
Q 037126 83 ESNNATIFVGALDS-DVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT--AIGKQTVRLSSGHN 159 (192)
Q Consensus 83 ~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~--~~~g~~l~v~~a~~ 159 (192)
..+.++|||+|||+ .+++++|+++|++||.|..+.+++++++|||+|.+.++|..|+..|++. .+.|++|.|.|++.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 35788999999999 9999999999999999999999999999999999999999999999864 59999999999985
Q ss_pred C
Q 037126 160 P 160 (192)
Q Consensus 160 ~ 160 (192)
.
T Consensus 92 ~ 92 (102)
T 1x4d_A 92 Y 92 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 30
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=6.7e-19 Score=114.51 Aligned_cols=84 Identities=24% Similarity=0.453 Sum_probs=77.5
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHN 159 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 159 (192)
.....+.++|||+|||..+++++|+++|++||.|..+.+.+++++|||+|.+.++|.+|+..|+|..++|++|+|.|+++
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 9 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCC
Q 037126 160 PGNK 163 (192)
Q Consensus 160 ~~~~ 163 (192)
+...
T Consensus 89 ~~~~ 92 (99)
T 2cpj_A 89 SASL 92 (99)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 5443
No 31
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-18 Score=112.67 Aligned_cols=85 Identities=33% Similarity=0.533 Sum_probs=77.5
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC----CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
.....+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|+..|+|..++|+.|+|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 444567899999999999999999999999999999999875 7899999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 037126 156 SGHNPGNKQ 164 (192)
Q Consensus 156 ~a~~~~~~~ 164 (192)
+++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cq3_A 89 NATARVMTN 97 (103)
T ss_dssp ECCSSCCCC
T ss_pred EcccCCCCC
Confidence 998765544
No 32
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-18 Score=112.88 Aligned_cols=81 Identities=21% Similarity=0.423 Sum_probs=75.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeC--CeEEEEEecC
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIG--KQTVRLSSGH 158 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~--g~~l~v~~a~ 158 (192)
....+.++|||+|||..+++++|+++|++||.|..+.+..++++|||+|.+.++|.+|+..|+|..++ |+.|+|.|++
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 34566789999999999999999999999999999999999999999999999999999999999999 9999999998
Q ss_pred CCC
Q 037126 159 NPG 161 (192)
Q Consensus 159 ~~~ 161 (192)
++.
T Consensus 92 ~~~ 94 (97)
T 1why_A 92 SGP 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 33
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5e-19 Score=118.22 Aligned_cols=83 Identities=14% Similarity=0.225 Sum_probs=75.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhc--CCeeCCeEEEEEecCC
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ--GTAIGKQTVRLSSGHN 159 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--g~~~~g~~l~v~~a~~ 159 (192)
...+.++|||+|||+.+++++|+++|++||.|..+.+++++|+|||+|.+.++|.+|+..++ +..++|++|.|.|+++
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 34667899999999999999999999999999999999999999999999999999999887 4689999999999986
Q ss_pred CCCCC
Q 037126 160 PGNKQ 164 (192)
Q Consensus 160 ~~~~~ 164 (192)
+..+.
T Consensus 107 k~~~~ 111 (119)
T 2ad9_A 107 KELKT 111 (119)
T ss_dssp SSCCC
T ss_pred CCCCc
Confidence 65543
No 34
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=3.8e-19 Score=111.31 Aligned_cols=74 Identities=16% Similarity=0.298 Sum_probs=71.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
.+.-|||+||++.++|++|+++|.+||+|..+.+..++|+|||+|.+.++|.+|++.||+..++|++|+|.+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999994
No 35
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=6.8e-20 Score=125.86 Aligned_cols=120 Identities=22% Similarity=0.322 Sum_probs=75.3
Q ss_pred eEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCCCCceEEEc
Q 037126 13 GYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNATIFVG 92 (192)
Q Consensus 13 g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 92 (192)
-++|++|.+...+..|++.++|....|+.- +.+..+ +....+.++|||+
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~------------------------------~~~~~~~~~l~V~ 53 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRP------------------------------PPDVEGMTSLKVD 53 (135)
T ss_dssp -------------------------------CCSCCS------------------------------CSSGGGCCCEEEE
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCCC------------------------------CCCCCCCCEEEEe
Confidence 357899999999999999998876655531 111110 2334557899999
Q ss_pred CCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCCC
Q 037126 93 ALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163 (192)
Q Consensus 93 ~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 163 (192)
|||..+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|+..|+|..++|++|+|.|+++....
T Consensus 54 nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 54 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 99999999999999999999999998753 689999999999999999999999999999999999865443
No 36
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=2.5e-18 Score=114.76 Aligned_cols=85 Identities=31% Similarity=0.559 Sum_probs=76.8
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
.....+.++|||+|||..+++++|+++|+.||.|..+.++.+ +|+|||+|.+.++|.+|+..|+|..++|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 444567899999999999999999999999999999998864 58999999999999999999999999999999
Q ss_pred EEecCCCCCCC
Q 037126 154 LSSGHNPGNKQ 164 (192)
Q Consensus 154 v~~a~~~~~~~ 164 (192)
|.|+++.....
T Consensus 89 V~~a~~~~~~~ 99 (115)
T 2dgo_A 89 TNWATRKPPAP 99 (115)
T ss_dssp EEESSCCCCCS
T ss_pred EEEccCCCCCC
Confidence 99998665543
No 37
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.2e-18 Score=112.04 Aligned_cols=84 Identities=26% Similarity=0.442 Sum_probs=76.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
.....+.++|||+|||..+++++|+++|++||.|..|.+.. ++|+|||+|.+.++|.+|+..|+|..+.|+.|+|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 34456789999999999999999999999999999999987 46899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 037126 156 SGHNPGNK 163 (192)
Q Consensus 156 ~a~~~~~~ 163 (192)
|++++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqi_A 89 WATTPSSQ 96 (103)
T ss_dssp ECCCTTCC
T ss_pred ECCCCccc
Confidence 99876544
No 38
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=9.4e-19 Score=110.57 Aligned_cols=79 Identities=32% Similarity=0.596 Sum_probs=74.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHh-cCCeeCCeEEEEEecC
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKL-QGTAIGKQTVRLSSGH 158 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l-~g~~~~g~~l~v~~a~ 158 (192)
+....+.++|||+|||..+++++|+++|++||.|..+.+.+++|+|||+|.+.++|.+|+..| +|..++|++|+|.|++
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 334567789999999999999999999999999999999999999999999999999999998 9999999999999985
No 39
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-18 Score=114.14 Aligned_cols=81 Identities=28% Similarity=0.557 Sum_probs=76.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCC
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGN 162 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 162 (192)
....++|||+|||..+++++|+++|++||.|..+.+..++|+|||+|.+.++|.+|+..|+|..++|+.|+|.|+++...
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999986654
Q ss_pred C
Q 037126 163 K 163 (192)
Q Consensus 163 ~ 163 (192)
.
T Consensus 102 ~ 102 (109)
T 1x4g_A 102 M 102 (109)
T ss_dssp S
T ss_pred C
Confidence 3
No 40
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3.7e-18 Score=111.12 Aligned_cols=83 Identities=17% Similarity=0.376 Sum_probs=75.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-----CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
.....+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|+.|+|
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 444567889999999999999999999999999999998864 489999999999999999999999999999999
Q ss_pred EecCCCCC
Q 037126 155 SSGHNPGN 162 (192)
Q Consensus 155 ~~a~~~~~ 162 (192)
.+++++..
T Consensus 91 ~~a~~~~~ 98 (100)
T 2do4_A 91 AISNSGPS 98 (100)
T ss_dssp EECCCCSC
T ss_pred EECCCCCC
Confidence 99986643
No 41
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.1e-18 Score=109.39 Aligned_cols=79 Identities=23% Similarity=0.508 Sum_probs=73.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCC
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGN 162 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 162 (192)
..+.++|||+|||..+++++|+++|++||.|..+.+. +++|||+|.+.++|.+|+..|+|..++|+.|+|.+++++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 4567899999999999999999999999999999988 69999999999999999999999999999999999986655
Q ss_pred C
Q 037126 163 K 163 (192)
Q Consensus 163 ~ 163 (192)
.
T Consensus 83 ~ 83 (90)
T 2dnq_A 83 A 83 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 42
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=2.9e-18 Score=112.59 Aligned_cols=84 Identities=25% Similarity=0.488 Sum_probs=76.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-----CceEEEEeCCHHHHHHHHHHhcCCeeCC---eEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGK---QTV 152 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g---~~l 152 (192)
....+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+.| +.|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34466899999999999999999999999999999999865 6999999999999999999999999988 999
Q ss_pred EEEecCCCCCCC
Q 037126 153 RLSSGHNPGNKQ 164 (192)
Q Consensus 153 ~v~~a~~~~~~~ 164 (192)
+|.|+++...+.
T Consensus 90 ~V~~a~~~~~~~ 101 (105)
T 2dnh_A 90 VVKFADTDKESG 101 (105)
T ss_dssp EEEESCSSCCCS
T ss_pred EEEECccCcccC
Confidence 999998765554
No 43
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.4e-18 Score=112.64 Aligned_cols=85 Identities=27% Similarity=0.481 Sum_probs=77.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-------CceEEEEeCCHHHHHHHHHHh-cCCeeCCeE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-------KGCGFVQFANRKDAEVALQKL-QGTAIGKQT 151 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-------~g~afv~f~~~~~a~~a~~~l-~g~~~~g~~ 151 (192)
.....+.++|||+|||..+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|+..| +|..++|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 444567899999999999999999999999999999999765 699999999999999999999 999999999
Q ss_pred EEEEecCCCCCCC
Q 037126 152 VRLSSGHNPGNKQ 164 (192)
Q Consensus 152 l~v~~a~~~~~~~ 164 (192)
|+|.|+++.....
T Consensus 89 l~v~~a~~~~~~~ 101 (107)
T 2cph_A 89 LVLEWADSEVTVQ 101 (107)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999998765543
No 44
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9e-18 Score=111.03 Aligned_cols=84 Identities=24% Similarity=0.413 Sum_probs=75.8
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG---KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
.....+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|+..|++..++|+.|+|.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 444567899999999999999999999999999999998763 68999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 037126 157 GHNPGNK 163 (192)
Q Consensus 157 a~~~~~~ 163 (192)
+++....
T Consensus 96 a~~~~~~ 102 (109)
T 1x4a_A 96 PRSGRGT 102 (109)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 9865443
No 45
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.8e-18 Score=112.30 Aligned_cols=85 Identities=27% Similarity=0.500 Sum_probs=76.9
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
.....+.++|||+|||..+++++|+++|++||.|..+.+.. .+++|||+|.+.++|.+|+..|+|..++|+.|+|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34456789999999999999999999999999999999885 37999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 037126 156 SGHNPGNKQ 164 (192)
Q Consensus 156 ~a~~~~~~~ 164 (192)
|++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2d9p_A 89 LAQRKEERQ 97 (103)
T ss_dssp ECSSCCCCC
T ss_pred EecccccCC
Confidence 998765544
No 46
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=9.8e-19 Score=124.07 Aligned_cols=137 Identities=18% Similarity=0.336 Sum_probs=74.0
Q ss_pred EEecCHHHHHHHHHHhcCceeC--CceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCCCCceEEEcCC
Q 037126 17 VRFGDENERSRAMIEMNGVYCS--SRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNATIFVGAL 94 (192)
Q Consensus 17 V~f~~~~~A~~A~~~l~~~~~~--g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l 94 (192)
.+|.+.++|+.|+..+++.... |+............. .+... .+ .........+....+.++|||+||
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~----~~~~~-----~~-s~~~~~~~~~~~~~~~~~l~V~nL 80 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIH----SYERV-----RN-EDDDELEPGPQRSVEGWILFVTSI 80 (165)
T ss_dssp -----------------------------------------------------------------CCCCC-CEEEEEESC
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccccc----Ccccc-----cc-CCCCCCCCCCCCCCCCCEEEEeCC
Confidence 7899999999999999886654 555554442211100 00000 00 000001111334566789999999
Q ss_pred CCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCCC
Q 037126 95 DSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163 (192)
Q Consensus 95 p~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 163 (192)
|..+++++|.++|++||.|..|.++.+ +|+|||+|.+.++|.+|+..|+|..+.|+.|.|.|+.+....
T Consensus 81 p~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 81 HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred CCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 999999999999999999999998864 699999999999999999999999999999999999755443
No 47
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.6e-18 Score=110.98 Aligned_cols=81 Identities=23% Similarity=0.406 Sum_probs=74.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
..+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999764 59999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 037126 157 GHNPGNK 163 (192)
Q Consensus 157 a~~~~~~ 163 (192)
++++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9876554
No 48
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=114.26 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=73.8
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcC--CeeCCeEEEEEecCC
Q 037126 83 ESNNATIFVGALDSD-VSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQG--TAIGKQTVRLSSGHN 159 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g--~~~~g~~l~v~~a~~ 159 (192)
..+.++|||+|||++ +++++|+++|++||.|..+.+++++|+|||+|.+.++|.+|+..|++ ..+.|++|+|.|++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 567899999999998 99999999999999999999999999999999999999999998864 569999999999975
Q ss_pred CCCC
Q 037126 160 PGNK 163 (192)
Q Consensus 160 ~~~~ 163 (192)
....
T Consensus 102 ~~~~ 105 (112)
T 1x4f_A 102 YKKL 105 (112)
T ss_dssp CSSS
T ss_pred cccc
Confidence 5443
No 49
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.78 E-value=2.7e-18 Score=107.90 Aligned_cols=75 Identities=31% Similarity=0.569 Sum_probs=70.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 037126 87 ATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 87 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 160 (192)
.+|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|+.|+|.|++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 57999999999999999999999999999998854 689999999999999999999999999999999999865
Q ss_pred C
Q 037126 161 G 161 (192)
Q Consensus 161 ~ 161 (192)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 50
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.2e-18 Score=111.86 Aligned_cols=83 Identities=28% Similarity=0.527 Sum_probs=75.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
...+.++|||+|||..+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|+..|+|..++|+.|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3467899999999999999999999999999999998753 6999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 037126 156 SGHNPGNKQ 164 (192)
Q Consensus 156 ~a~~~~~~~ 164 (192)
++++...+.
T Consensus 88 ~a~~~~~~~ 96 (102)
T 2cqb_A 88 LAKPMRIKE 96 (102)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 998765554
No 51
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=112.81 Aligned_cols=98 Identities=22% Similarity=0.339 Sum_probs=80.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCCCCC
Q 037126 87 ATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNKQW 165 (192)
Q Consensus 87 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~~ 165 (192)
++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|+.|+|.++++......
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 47999999999999999999999999999999986 99999999999999999999999999999999999987654432
Q ss_pred CCCccchhccccCccccCCC
Q 037126 166 RGDHINLIALAQDATYVNNR 185 (192)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~ 185 (192)
.+. ...........|++++
T Consensus 81 ~~~-~~~~~~~~~~ifvg~L 99 (101)
T 2hvz_A 81 FDR-PPARRKLLEVLFNGPL 99 (101)
T ss_dssp CCS-CCCSCCCCSCCCSCCC
T ss_pred CCC-CCccccCCCceecCCC
Confidence 221 1112223455666554
No 52
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.7e-18 Score=110.85 Aligned_cols=85 Identities=28% Similarity=0.433 Sum_probs=76.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
.....+.++|||+|||..+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|+..|+|..++|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 344567899999999999999999999999999999998754 57999999999999999999999999999999
Q ss_pred EEecCCCCCCC
Q 037126 154 LSSGHNPGNKQ 164 (192)
Q Consensus 154 v~~a~~~~~~~ 164 (192)
|.|+++.....
T Consensus 89 v~~a~~~~~~~ 99 (103)
T 2cq0_A 89 VEWAKPSTNSG 99 (103)
T ss_dssp EEESSCCCCSC
T ss_pred EEECCCCCCCC
Confidence 99998765543
No 53
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.3e-18 Score=110.98 Aligned_cols=80 Identities=25% Similarity=0.473 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC---------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV---------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~---------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
.+.++|||+|||..+++++|+++|++||.|..+.+.. .+|+|||+|.+.++|.+|+..|+|..++|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999998874 2579999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 037126 155 SSGHNPGNK 163 (192)
Q Consensus 155 ~~a~~~~~~ 163 (192)
.++++....
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999866544
No 54
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.77 E-value=8e-18 Score=112.32 Aligned_cols=85 Identities=26% Similarity=0.492 Sum_probs=76.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
.....+.++|||+|||..+++++|+++|+.||.|..+.++.+ +|+|||+|.+.++|.+|+..|+|..++|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 444566789999999999999999999999999999998764 47999999999999999999999999999999
Q ss_pred EEecCCCCCCC
Q 037126 154 LSSGHNPGNKQ 164 (192)
Q Consensus 154 v~~a~~~~~~~ 164 (192)
|.|++++....
T Consensus 99 V~~a~~~~~~~ 109 (115)
T 2cpz_A 99 VQLKRSKNDSK 109 (115)
T ss_dssp EECCCCSCCCC
T ss_pred EEEcCCCCcCC
Confidence 99998665543
No 55
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.5e-18 Score=111.34 Aligned_cols=84 Identities=25% Similarity=0.410 Sum_probs=75.8
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
+....+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|+.|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 344567899999999999999999999999999999998753 68999999999999999999999999999999
Q ss_pred EEecCCCCCC
Q 037126 154 LSSGHNPGNK 163 (192)
Q Consensus 154 v~~a~~~~~~ 163 (192)
|.+++.....
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dnm_A 87 VQVARYGRRD 96 (103)
T ss_dssp EEECSSCCSC
T ss_pred EEECCcCCCC
Confidence 9999865444
No 56
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.2e-18 Score=110.11 Aligned_cols=80 Identities=28% Similarity=0.374 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhccCCCeEEEEEeCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 84 SNNATIFVGALDSDVSDKDLR----EPFSHFGEILSVKIPVG---KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
.+..+|||+|||..+++++|+ ++|++||.|..+.++.+ +++|||+|.+.++|.+|+..|||..++|++|+|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456799999999999999999 99999999999999865 79999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 037126 157 GHNPGNK 163 (192)
Q Consensus 157 a~~~~~~ 163 (192)
+++...+
T Consensus 87 a~~~~~~ 93 (96)
T 2dgx_A 87 ATGASGP 93 (96)
T ss_dssp CCCSSCC
T ss_pred cCCCCCC
Confidence 9865443
No 57
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=8.6e-18 Score=109.20 Aligned_cols=82 Identities=24% Similarity=0.470 Sum_probs=74.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
...+.++|||+|||..+++++|+++|++||.|..+.++. .+|+|||+|.+.++|.+|+. +++..++|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 346678999999999999999999999999999999976 36999999999999999999 99999999999999
Q ss_pred ecCCCCCCC
Q 037126 156 SGHNPGNKQ 164 (192)
Q Consensus 156 ~a~~~~~~~ 164 (192)
+++++....
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2dgs_A 85 RAEPRDSKS 93 (99)
T ss_dssp ECCCCCCCC
T ss_pred ECCCCcccC
Confidence 998765543
No 58
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.9e-18 Score=112.76 Aligned_cols=77 Identities=25% Similarity=0.440 Sum_probs=73.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHN 159 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 159 (192)
....++|||+|||..+++++|+++|++||.|..+.+.+++|+|||+|.+.++|.+|+..|+|..++|+.|+|.|+++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999975
No 59
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=9e-18 Score=111.31 Aligned_cols=85 Identities=21% Similarity=0.454 Sum_probs=76.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhc------CCee
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQ------GTAI 147 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~------g~~~ 147 (192)
+....+.++|||+|||..+++++|+++|++||.|..|.++. .+|+|||+|.+.++|.+|+..|+ +..+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 44556788999999999999999999999999999999984 37999999999999999999999 9999
Q ss_pred CCeEEEEEecCCCCCCC
Q 037126 148 GKQTVRLSSGHNPGNKQ 164 (192)
Q Consensus 148 ~g~~l~v~~a~~~~~~~ 164 (192)
+|+.|+|.|++++....
T Consensus 89 ~g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SSCEEEEECCCCCCCCC
T ss_pred cCEEEEEEECCCCccCC
Confidence 99999999998665543
No 60
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=8.3e-18 Score=108.18 Aligned_cols=79 Identities=20% Similarity=0.400 Sum_probs=72.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
.....+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|++.|+|..++|++|+
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 344567889999999999999999999999999999999763 58999999999999999999999999999999
Q ss_pred EEecC
Q 037126 154 LSSGH 158 (192)
Q Consensus 154 v~~a~ 158 (192)
|.||+
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 61
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1e-17 Score=107.36 Aligned_cols=81 Identities=17% Similarity=0.367 Sum_probs=74.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 160 (192)
....+.++|||+|||..+++++|+++|++||.|..+.+.+ ++|||+|.+.++|.+|+..|+|..++|+.|+|.+++++
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 3456789999999999999999999999999999999985 59999999999999999999999999999999999866
Q ss_pred CCC
Q 037126 161 GNK 163 (192)
Q Consensus 161 ~~~ 163 (192)
...
T Consensus 83 ~~~ 85 (92)
T 2dgt_A 83 LRT 85 (92)
T ss_dssp CSC
T ss_pred CCC
Confidence 544
No 62
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=4.3e-18 Score=112.75 Aligned_cols=77 Identities=17% Similarity=0.238 Sum_probs=71.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
.+.++|||+|||+.+++++|+++|++||.|.++.++. ++|+|||+|.+.++|.+|+..|||..++|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5678999999999999999999999999999999875 3589999999999999999999999999999999999
Q ss_pred CCC
Q 037126 158 HNP 160 (192)
Q Consensus 158 ~~~ 160 (192)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 643
No 63
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=4.7e-18 Score=107.95 Aligned_cols=78 Identities=29% Similarity=0.549 Sum_probs=71.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC-------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~-------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
...++|||+|||..+++++|.++|++||.|..+.+.. .+|+|||+|.+.++|.+|+..|+|..++|+.|+|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3567899999999999999999999999999998864 478999999999999999999999999999999999
Q ss_pred cCCCC
Q 037126 157 GHNPG 161 (192)
Q Consensus 157 a~~~~ 161 (192)
+.++.
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97653
No 64
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=4.8e-18 Score=109.79 Aligned_cols=78 Identities=18% Similarity=0.455 Sum_probs=72.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
++++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|+.|+|.+++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 4679999999999999999999999999999999764 6999999999999999999999999999999999998
Q ss_pred CCCC
Q 037126 159 NPGN 162 (192)
Q Consensus 159 ~~~~ 162 (192)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 6543
No 65
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=4.5e-18 Score=107.40 Aligned_cols=76 Identities=29% Similarity=0.594 Sum_probs=70.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
..+.++|||+|||..+++++|+++|++||.|..+.++. .+|+|||+|.+.++|.+|+..|+|..++|++|+|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35678999999999999999999999999999999865 379999999999999999999999999999999999
Q ss_pred cC
Q 037126 157 GH 158 (192)
Q Consensus 157 a~ 158 (192)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 66
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.4e-18 Score=110.15 Aligned_cols=85 Identities=26% Similarity=0.486 Sum_probs=76.5
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
.....+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 344567899999999999999999999999999999998763 58999999999999999999999999999999
Q ss_pred EEecCCCCCCC
Q 037126 154 LSSGHNPGNKQ 164 (192)
Q Consensus 154 v~~a~~~~~~~ 164 (192)
|.++++.....
T Consensus 89 v~~a~~~~~~~ 99 (105)
T 1x5u_A 89 VNKASAHNKNL 99 (105)
T ss_dssp EEETTTTSCCC
T ss_pred EEECCCCCcCC
Confidence 99998765543
No 67
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=9.3e-18 Score=108.17 Aligned_cols=80 Identities=26% Similarity=0.489 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
.+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|++|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999864 589999999999999999999999999999999999
Q ss_pred CCCCCC
Q 037126 158 HNPGNK 163 (192)
Q Consensus 158 ~~~~~~ 163 (192)
+++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 866544
No 68
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-17 Score=109.52 Aligned_cols=80 Identities=20% Similarity=0.335 Sum_probs=74.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCC-----eEEEEEec
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGK-----QTVRLSSG 157 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g-----~~l~v~~a 157 (192)
....++|||+|||+.+++++|+++|++||.|..+.++.+ |+|||+|.+.++|.+|++.|+|..++| +.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 456789999999999999999999999999999999988 999999999999999999999999999 99999999
Q ss_pred CCCCCC
Q 037126 158 HNPGNK 163 (192)
Q Consensus 158 ~~~~~~ 163 (192)
++....
T Consensus 91 ~~~~~~ 96 (108)
T 1x4c_A 91 GPRSPS 96 (108)
T ss_dssp SCCSCC
T ss_pred CCCCCC
Confidence 865443
No 69
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.77 E-value=9.7e-18 Score=109.77 Aligned_cols=81 Identities=25% Similarity=0.482 Sum_probs=74.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPG 161 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 161 (192)
...+.++|||+|||..+++++|+++|++||.|..+.+.+ ++|||+|.+.++|.+|+..|+|..++|+.|+|.|++++.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 345678999999999999999999999999999998884 699999999999999999999999999999999998665
Q ss_pred CCC
Q 037126 162 NKQ 164 (192)
Q Consensus 162 ~~~ 164 (192)
...
T Consensus 85 ~~~ 87 (103)
T 2dgu_A 85 QKR 87 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 70
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.4e-18 Score=110.45 Aligned_cols=81 Identities=31% Similarity=0.559 Sum_probs=74.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEE-EEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSV-KIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~-~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
.+.++|||+|||..+++++|+++|++||.|..+ .++.+ +|+|||+|.+.++|.+|+..|+|..++|+.|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 88764 69999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 037126 157 GHNPGNKQ 164 (192)
Q Consensus 157 a~~~~~~~ 164 (192)
++++....
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 98665543
No 71
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.77 E-value=6.7e-19 Score=112.80 Aligned_cols=77 Identities=18% Similarity=0.314 Sum_probs=68.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeC------CCceEEEEeCCHHHHHHHHHHh-cCCeeCCeEEEEEec
Q 037126 86 NATIFVGALDSDVSDKDLREPFSHFG-EILSVKIPV------GKGCGFVQFANRKDAEVALQKL-QGTAIGKQTVRLSSG 157 (192)
Q Consensus 86 ~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l-~g~~~~g~~l~v~~a 157 (192)
+++|||+|||..+++++|+++|++|| .|..+++++ ++|+|||+|.+.++|.+|++.+ ++..++|++|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 799998875 3699999999999999999877 466899999999999
Q ss_pred CCCCC
Q 037126 158 HNPGN 162 (192)
Q Consensus 158 ~~~~~ 162 (192)
+++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 86543
No 72
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.3e-17 Score=107.20 Aligned_cols=81 Identities=23% Similarity=0.397 Sum_probs=73.5
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccC--CCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHF--GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~--g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
.....+.++|||+|||..+++++|+++|++| |.|..+.+. +++|||+|.+.++|.+|+..|+|..++|+.|+|.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3445678999999999999999999999999 999998876 579999999999999999999999999999999999
Q ss_pred CCCCC
Q 037126 158 HNPGN 162 (192)
Q Consensus 158 ~~~~~ 162 (192)
++...
T Consensus 87 ~~~~~ 91 (99)
T 2cpd_A 87 KPVDK 91 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 86654
No 73
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-17 Score=110.08 Aligned_cols=83 Identities=25% Similarity=0.344 Sum_probs=74.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-----CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
....+.++|||+|||..+++++|+++|++||.|..+.+..+ +++|||+|.+.++|.+|+..|+|..++|+.|+|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34466789999999999999999999999999999998864 6899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 037126 156 SGHNPGNK 163 (192)
Q Consensus 156 ~a~~~~~~ 163 (192)
+++....+
T Consensus 90 ~a~~~~~~ 97 (114)
T 2do0_A 90 MDERALPK 97 (114)
T ss_dssp ECSCCCCC
T ss_pred EcccCCCC
Confidence 99754433
No 74
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=4.2e-18 Score=108.00 Aligned_cols=77 Identities=30% Similarity=0.565 Sum_probs=69.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
.+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|+.|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45689999999999999999999999999999998764 589999999999999999999999999999999999
Q ss_pred CCC
Q 037126 158 HNP 160 (192)
Q Consensus 158 ~~~ 160 (192)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 75
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.76 E-value=5.7e-18 Score=111.85 Aligned_cols=81 Identities=30% Similarity=0.561 Sum_probs=73.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHN 159 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 159 (192)
.....+.++|||+|||..+++++|+++|++||.|..+.+. +|+|||+|.+.++|.+|+..|+|..++|+.|.|.|+++
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3445678999999999999999999999999999999988 79999999999999999999999999999999999986
Q ss_pred CCC
Q 037126 160 PGN 162 (192)
Q Consensus 160 ~~~ 162 (192)
+..
T Consensus 103 ~~~ 105 (108)
T 2jvo_A 103 PAK 105 (108)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 76
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.6e-18 Score=112.83 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPG 161 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 161 (192)
...++|||+|||..+++++|+++|++||.|..+.+.+++++|||+|.+.++|..|+..|||..++|+.|.|.|++...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999997543
No 77
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=9.5e-18 Score=111.32 Aligned_cols=82 Identities=24% Similarity=0.349 Sum_probs=74.8
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHH---HHhccCCCeEEEEEeCC---------CceEEEEeCCHHHHHHHHHHhcCCee
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLR---EPFSHFGEILSVKIPVG---------KGCGFVQFANRKDAEVALQKLQGTAI 147 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~---~~f~~~g~i~~~~~~~~---------~g~afv~f~~~~~a~~a~~~l~g~~~ 147 (192)
.......++|||+|||+.+++++|. ++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+
T Consensus 9 ~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 9 SVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 4455678899999999999999999 99999999999999864 37999999999999999999999999
Q ss_pred CCeEEEEEecCCCC
Q 037126 148 GKQTVRLSSGHNPG 161 (192)
Q Consensus 148 ~g~~l~v~~a~~~~ 161 (192)
+|++|+|.|++++.
T Consensus 89 ~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEEEEESCCCCS
T ss_pred CCEEEEEEeccccc
Confidence 99999999998664
No 78
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.6e-18 Score=110.33 Aligned_cols=83 Identities=28% Similarity=0.556 Sum_probs=75.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
....+.++|||+|||..+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|+..|+|..++|++|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34467789999999999999999999999999999999863 689999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 037126 155 SSGHNPGNK 163 (192)
Q Consensus 155 ~~a~~~~~~ 163 (192)
.++++....
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x5s_A 87 DQAGKSSDN 95 (102)
T ss_dssp EEEECCCCC
T ss_pred EECCCCCCC
Confidence 999866544
No 79
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-17 Score=106.14 Aligned_cols=80 Identities=21% Similarity=0.436 Sum_probs=73.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPG 161 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 161 (192)
...+.++|||+|||..+++++|+++|++||.|..+.+.+ ++|||+|.+.++|.+|+..|+|..++|+.|+|.++++..
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 346678999999999999999999999999999999985 599999999999999999999999999999999998664
Q ss_pred CC
Q 037126 162 NK 163 (192)
Q Consensus 162 ~~ 163 (192)
..
T Consensus 83 ~~ 84 (90)
T 2dnp_A 83 KK 84 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 80
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.76 E-value=5.7e-18 Score=109.17 Aligned_cols=80 Identities=28% Similarity=0.416 Sum_probs=72.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-----CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
.....+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|+.|+|
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 344567799999999999999999999999999999998864 689999999999999999999999999999999
Q ss_pred EecCC
Q 037126 155 SSGHN 159 (192)
Q Consensus 155 ~~a~~ 159 (192)
.+++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99863
No 81
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=1e-17 Score=110.21 Aligned_cols=84 Identities=20% Similarity=0.471 Sum_probs=75.8
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCee---CCe
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAI---GKQ 150 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~---~g~ 150 (192)
.....+.++|||+|||..+++++|+++|++||.|..+.++. .+|+|||+|.+.++|.+|+..|+|..+ .|+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 44556789999999999999999999999999999999886 368999999999999999999999988 899
Q ss_pred EEEEEecCCCCCC
Q 037126 151 TVRLSSGHNPGNK 163 (192)
Q Consensus 151 ~l~v~~a~~~~~~ 163 (192)
.|+|.++++....
T Consensus 87 ~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 87 PIQVKPADSESRG 99 (106)
T ss_dssp CCEEEECCCCSCC
T ss_pred eEEEEECCccccc
Confidence 9999999866544
No 82
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.6e-18 Score=109.74 Aligned_cols=80 Identities=19% Similarity=0.344 Sum_probs=71.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCC-eEEEEEeCCCceEEEEeCCHHHHHHHHHHhcC-CeeCCeEEEEEecCCC
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGE-ILSVKIPVGKGCGFVQFANRKDAEVALQKLQG-TAIGKQTVRLSSGHNP 160 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~-i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g-~~~~g~~l~v~~a~~~ 160 (192)
..+.++|||+|||..+++++|+++|++||. |..+.+ .++|+|||+|.+.++|.+|+..|+| ..++|+.|+|.|+++.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 356789999999999999999999999999 555444 5689999999999999999999999 9999999999999866
Q ss_pred CCC
Q 037126 161 GNK 163 (192)
Q Consensus 161 ~~~ 163 (192)
...
T Consensus 84 ~~~ 86 (93)
T 2cqh_A 84 KLR 86 (93)
T ss_dssp CCC
T ss_pred ccc
Confidence 544
No 83
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-17 Score=107.83 Aligned_cols=80 Identities=30% Similarity=0.450 Sum_probs=73.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
.....+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|++|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344567899999999999999999999999999999998753 58999999999999999999999999999999
Q ss_pred EEecCC
Q 037126 154 LSSGHN 159 (192)
Q Consensus 154 v~~a~~ 159 (192)
|.|++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999974
No 84
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.6e-18 Score=111.43 Aligned_cols=81 Identities=33% Similarity=0.576 Sum_probs=74.9
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC----CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
.......++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|+.|+|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 444567899999999999999999999999999999999864 7999999999999999999999999999999999
Q ss_pred ecCCC
Q 037126 156 SGHNP 160 (192)
Q Consensus 156 ~a~~~ 160 (192)
+++++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99864
No 85
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-17 Score=110.40 Aligned_cols=84 Identities=23% Similarity=0.380 Sum_probs=75.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeE--------EEEEeCC------CceEEEEeCCHHHHHHHHHHhcCC
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEIL--------SVKIPVG------KGCGFVQFANRKDAEVALQKLQGT 145 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~--------~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~ 145 (192)
.....+.++|||+|||..+++++|+++|++||.|. .+.++.+ +|+|||+|.+.++|.+|+..|+|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34557789999999999999999999999999998 5888753 689999999999999999999999
Q ss_pred eeCCeEEEEEecCCCCCC
Q 037126 146 AIGKQTVRLSSGHNPGNK 163 (192)
Q Consensus 146 ~~~g~~l~v~~a~~~~~~ 163 (192)
.++|+.|+|.++++....
T Consensus 89 ~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp EETTEECEEECSSCCCCS
T ss_pred ccCCCEEEEEECCCCCCC
Confidence 999999999999866544
No 86
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=5.5e-18 Score=108.61 Aligned_cols=80 Identities=29% Similarity=0.486 Sum_probs=73.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
..+.++|||+|||..+++++|+++|++||.|..+.+.. .+|+|||+|.+.++|.+|+..|+|..++|+.|+|.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45678999999999999999999999999999999886 36899999999999999999999999999999999998
Q ss_pred CCCC
Q 037126 159 NPGN 162 (192)
Q Consensus 159 ~~~~ 162 (192)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6543
No 87
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.75 E-value=1.1e-17 Score=112.05 Aligned_cols=79 Identities=27% Similarity=0.522 Sum_probs=72.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
.....+.++|||+|||..+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|+..|+|..++|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 445567899999999999999999999999999999999753 68999999999999999999999999999999
Q ss_pred EEecC
Q 037126 154 LSSGH 158 (192)
Q Consensus 154 v~~a~ 158 (192)
|.|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99985
No 88
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=6e-18 Score=108.99 Aligned_cols=78 Identities=19% Similarity=0.305 Sum_probs=69.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCC--eEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCC----eeCC
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGE--ILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGT----AIGK 149 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~--i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~----~~~g 149 (192)
....-.+|||+|||+.+++++|+++|++||. +..|++++ ++|+|||+|.+.++|.+|++.|+|. .++|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3455578999999999999999999999995 67888875 3689999999999999999999997 5899
Q ss_pred eEEEEEecCC
Q 037126 150 QTVRLSSGHN 159 (192)
Q Consensus 150 ~~l~v~~a~~ 159 (192)
++|.|.||++
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999974
No 89
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.75 E-value=1.8e-17 Score=107.33 Aligned_cols=79 Identities=25% Similarity=0.423 Sum_probs=71.7
Q ss_pred CCCCCCCceEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 80 SDGESNNATIFVGALDS-DVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
.....+.++|||+|||. .+++++|+++|++||.|..+.+. +|+|||+|.+.++|.+|+..|+|..++|+.|+|.+++
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 34456789999999998 99999999999999999999885 7999999999999999999999999999999999997
Q ss_pred CC
Q 037126 159 NP 160 (192)
Q Consensus 159 ~~ 160 (192)
..
T Consensus 94 ~~ 95 (97)
T 2xnq_A 94 SN 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 90
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=1.5e-17 Score=111.18 Aligned_cols=81 Identities=22% Similarity=0.506 Sum_probs=74.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-----CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
..+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|+.|+|.++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 355789999999999999999999999999999999874 499999999999999999999999999999999999
Q ss_pred CCCCCC
Q 037126 158 HNPGNK 163 (192)
Q Consensus 158 ~~~~~~ 163 (192)
+++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 866543
No 91
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.75 E-value=1e-17 Score=110.87 Aligned_cols=82 Identities=23% Similarity=0.460 Sum_probs=74.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
+....+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|+.|+
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 344567789999999999999999999999999999998753 69999999999999999999999999999999
Q ss_pred EEecCCCC
Q 037126 154 LSSGHNPG 161 (192)
Q Consensus 154 v~~a~~~~ 161 (192)
|.|+++..
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99997553
No 92
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.4e-17 Score=105.04 Aligned_cols=80 Identities=23% Similarity=0.441 Sum_probs=73.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPG 161 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 161 (192)
...+.++|||+|+ .+++++|+++|++||.|..+.+...+|+|||+|.+.++|.+|+..|+|..++|+.|+|.|++++.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 3456789999995 89999999999999999999999999999999999999999999999999999999999998665
Q ss_pred CC
Q 037126 162 NK 163 (192)
Q Consensus 162 ~~ 163 (192)
..
T Consensus 89 ~~ 90 (97)
T 1x5p_A 89 ML 90 (97)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 93
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.5e-18 Score=111.45 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=73.2
Q ss_pred CCCCceEEE--cCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCee-----CCeEEEEE
Q 037126 83 ESNNATIFV--GALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI-----GKQTVRLS 155 (192)
Q Consensus 83 ~~~~~~l~v--~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~-----~g~~l~v~ 155 (192)
..+.+.||| +||+..+++++|+++|++||.|..+.+..++|+|||+|.+.++|.+|+..|||..+ .|++|.|.
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 356788999 77999999999999999999999999999999999999999999999999999998 78999999
Q ss_pred ecCCCCC
Q 037126 156 SGHNPGN 162 (192)
Q Consensus 156 ~a~~~~~ 162 (192)
|++....
T Consensus 102 ~a~~~p~ 108 (114)
T 2cq2_A 102 FVEKVQW 108 (114)
T ss_dssp EESCCCC
T ss_pred ecccCcc
Confidence 9975433
No 94
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=2e-17 Score=109.56 Aligned_cols=78 Identities=28% Similarity=0.547 Sum_probs=72.1
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCC
Q 037126 84 SNNATIFVGALDSD-VSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGN 162 (192)
Q Consensus 84 ~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 162 (192)
...++|||+|||.. +++++|+++|++||.|..+.+ .+++|||+|.+.++|.+|+..|+|..++|+.|+|.+++.+..
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 45689999999999 999999999999999999988 679999999999999999999999999999999999985544
Q ss_pred C
Q 037126 163 K 163 (192)
Q Consensus 163 ~ 163 (192)
.
T Consensus 103 ~ 103 (110)
T 1wf1_A 103 D 103 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 95
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-17 Score=107.32 Aligned_cols=81 Identities=27% Similarity=0.493 Sum_probs=73.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
....+.++|||+|||..+++++|+++|+.|| |..+.++.+ +|+|||+|.+.++|.+|+ .|++..++|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 3346679999999999999999999999999 999998753 689999999999999999 8999999999999
Q ss_pred EEecCCCCCC
Q 037126 154 LSSGHNPGNK 163 (192)
Q Consensus 154 v~~a~~~~~~ 163 (192)
|.+++++...
T Consensus 88 V~~a~~~~~~ 97 (104)
T 1wi8_A 88 VDVADQAQDK 97 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999876554
No 96
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.9e-18 Score=110.71 Aligned_cols=80 Identities=20% Similarity=0.449 Sum_probs=73.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
....+.++|||+|||..+++++|.++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|+.|+|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 34466789999999999999999999999999999998753 589999999999999999999999999999999
Q ss_pred EecCCC
Q 037126 155 SSGHNP 160 (192)
Q Consensus 155 ~~a~~~ 160 (192)
.|++++
T Consensus 98 ~~a~~~ 103 (106)
T 1p27_B 98 DWCFVR 103 (106)
T ss_dssp EESEES
T ss_pred EeecCC
Confidence 999754
No 97
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.75 E-value=1.3e-17 Score=107.96 Aligned_cols=79 Identities=27% Similarity=0.487 Sum_probs=72.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHhccCCCeEEEEEeC---CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 83 ESNNATIFVGALDSDVSDKDLR----EPFSHFGEILSVKIPV---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~---~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
..+.++|||+|||..+++++|+ ++|++||.|..+.+.. ++|+|||+|.+.++|.+|+..|+|..++|+.|+|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4677899999999999999999 9999999999999873 57999999999999999999999999999999999
Q ss_pred ecCCCC
Q 037126 156 SGHNPG 161 (192)
Q Consensus 156 ~a~~~~ 161 (192)
|+++..
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 998654
No 98
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.2e-17 Score=105.55 Aligned_cols=80 Identities=23% Similarity=0.464 Sum_probs=71.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEe--CCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIP--VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
......++|||+|||..+++++|+++|++||.|. +.++ ..+|+|||+|.+.++|.+|+..|+|..++|+.|+|.+++
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3445678999999999999999999999999985 4444 468999999999999999999999999999999999998
Q ss_pred CCC
Q 037126 159 NPG 161 (192)
Q Consensus 159 ~~~ 161 (192)
++.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 99
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=109.63 Aligned_cols=81 Identities=26% Similarity=0.542 Sum_probs=74.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
+....+.++|||+|||..+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|+..|+|..++|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 444567799999999999999999999999999999998753 58999999999999999999999999999999
Q ss_pred EEecCCC
Q 037126 154 LSSGHNP 160 (192)
Q Consensus 154 v~~a~~~ 160 (192)
|.+++++
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9999865
No 100
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=1.5e-17 Score=113.18 Aligned_cols=82 Identities=28% Similarity=0.413 Sum_probs=74.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
.....+.++|||+|||..+++++|+++|++||.|..+.++. .+|+|||+|.+.++|.+|+..|+|..++|++|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456788999999999999999999999999999999975 368999999999999999999999999999999
Q ss_pred EEecCCCC
Q 037126 154 LSSGHNPG 161 (192)
Q Consensus 154 v~~a~~~~ 161 (192)
|.|++++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998653
No 101
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=109.78 Aligned_cols=83 Identities=31% Similarity=0.496 Sum_probs=75.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcc-CCCeEEEEEeCC-----CceEEEEeCCHHHHHHHHHHhcCCe-eCCeEEEE
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSH-FGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTA-IGKQTVRL 154 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~-~g~i~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~-~~g~~l~v 154 (192)
...+.++|||+|||..+++++|+++|++ ||.|..+.++.+ +|+|||+|.+.++|.+|+..|+|.. ++|+.|+|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 3466789999999999999999999999 999999998864 7899999999999999999999999 99999999
Q ss_pred EecCCCCCCC
Q 037126 155 SSGHNPGNKQ 164 (192)
Q Consensus 155 ~~a~~~~~~~ 164 (192)
.++++.....
T Consensus 85 ~~a~~~~~~~ 94 (104)
T 2dhg_A 85 SVAIPKASRV 94 (104)
T ss_dssp CBCCCCCSCC
T ss_pred EEccCCCcCC
Confidence 9997665543
No 102
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=5.6e-17 Score=106.08 Aligned_cols=82 Identities=22% Similarity=0.360 Sum_probs=73.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
.....+.++|||+|||..+++++|+++|++|| |..+.++.+ +|+|||+|.+.++|.+|+ .|+|..++|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 34456689999999999999999999999997 999998753 589999999999999999 8999999999999
Q ss_pred EEecCCCCCC
Q 037126 154 LSSGHNPGNK 163 (192)
Q Consensus 154 v~~a~~~~~~ 163 (192)
|.++++....
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dng_A 87 VDIAEGRKQD 96 (103)
T ss_dssp EEECCCCCCC
T ss_pred EEEecCCCCC
Confidence 9999866544
No 103
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=1.3e-17 Score=110.28 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEe--CCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFG-EILSVKIP--VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~i~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 160 (192)
.....|||+|||+.+++++|+++|++|| .|..+.+. .++|+|||+|.+.++|.+|+..|+|..++|+.|+|.+++.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4568999999999999999999999999 89999886 36899999999999999999999999999999999999744
No 104
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=106.81 Aligned_cols=79 Identities=24% Similarity=0.408 Sum_probs=72.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEE--------EEEeCC------CceEEEEeCCHHHHHHHHHHhcCC
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILS--------VKIPVG------KGCGFVQFANRKDAEVALQKLQGT 145 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~ 145 (192)
.....+.++|||+|||..+++++|+++|++||.|.. +.++.+ +|+|||+|.+.++|.+|++.|+|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344567899999999999999999999999999999 888753 589999999999999999999999
Q ss_pred eeCCeEEEEEecC
Q 037126 146 AIGKQTVRLSSGH 158 (192)
Q Consensus 146 ~~~g~~l~v~~a~ 158 (192)
.++|+.|+|.+|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999984
No 105
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.8e-17 Score=107.65 Aligned_cols=82 Identities=28% Similarity=0.419 Sum_probs=74.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
.....+.++|||+|||..+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|+..+++ .++|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 455677899999999999999999999999999999999864 58999999999999999999998 89999999
Q ss_pred EEecCCCCC
Q 037126 154 LSSGHNPGN 162 (192)
Q Consensus 154 v~~a~~~~~ 162 (192)
|.+++....
T Consensus 90 V~~a~~~~~ 98 (116)
T 2cqd_A 90 VNLAYLGAK 98 (116)
T ss_dssp EEESTTTCC
T ss_pred EEEcccCCC
Confidence 999975433
No 106
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.2e-17 Score=107.91 Aligned_cols=80 Identities=24% Similarity=0.380 Sum_probs=71.5
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 037126 82 GESNNATIFVGALDS-DVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 160 (192)
...+.++|||+|||. .+++++|+++|++||.|..+.+. +|+|||+|.+.++|.+|+..|+|..+.|++|+|.++++.
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 346788999999998 99999999999999999999986 699999999999999999999999999999999999765
Q ss_pred CCC
Q 037126 161 GNK 163 (192)
Q Consensus 161 ~~~ 163 (192)
...
T Consensus 84 ~~~ 86 (96)
T 2kvi_A 84 ARP 86 (96)
T ss_dssp CC-
T ss_pred CCC
Confidence 444
No 107
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=2.1e-17 Score=112.01 Aligned_cols=84 Identities=20% Similarity=0.449 Sum_probs=75.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
+....+.++|||+|||..+++++|.++|++||.|..+.++.+ +|+|||+|.+.++|.+|+..|+|..++|+.|.
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 344566789999999999999999999999999999998754 79999999999999999999999999999999
Q ss_pred EEecCCCCCC
Q 037126 154 LSSGHNPGNK 163 (192)
Q Consensus 154 v~~a~~~~~~ 163 (192)
|.|+++....
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999755444
No 108
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=111.67 Aligned_cols=79 Identities=16% Similarity=0.392 Sum_probs=71.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHhccCCCeEEEEEeC---CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 83 ESNNATIFVGALDSDVSDKDLR----EPFSHFGEILSVKIPV---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~---~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
..+.++|||+|||+.+++++|+ ++|++||.|..|.+.. .+|+|||+|.+.++|..|+..|+|..+.|++|+|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 4567899999999999998875 6899999999998864 57999999999999999999999999999999999
Q ss_pred ecCCCC
Q 037126 156 SGHNPG 161 (192)
Q Consensus 156 ~a~~~~ 161 (192)
|++.+.
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 998654
No 109
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.73 E-value=3.4e-17 Score=107.80 Aligned_cols=79 Identities=24% Similarity=0.422 Sum_probs=72.5
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-----CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
.....+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|+.|+|
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 344567899999999999999999999999999999998853 689999999999999999999999999999999
Q ss_pred EecC
Q 037126 155 SSGH 158 (192)
Q Consensus 155 ~~a~ 158 (192)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 110
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-17 Score=108.07 Aligned_cols=83 Identities=24% Similarity=0.462 Sum_probs=74.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
.....+.++|||+|||..+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|+.. ++..++|+.|+
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 344567899999999999999999999999999999998764 48999999999999999998 99999999999
Q ss_pred EEecCCCCCC
Q 037126 154 LSSGHNPGNK 163 (192)
Q Consensus 154 v~~a~~~~~~ 163 (192)
|.++++....
T Consensus 89 V~~a~~~~~~ 98 (105)
T 2dh8_A 89 PKPCTPRGMQ 98 (105)
T ss_dssp CCCSCCSSCC
T ss_pred EEEccCCCCC
Confidence 9999866543
No 111
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=9.5e-17 Score=104.59 Aligned_cols=84 Identities=24% Similarity=0.313 Sum_probs=71.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEe--CCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIP--VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
.....+.++|||+|||..+++++|+++|++||.|.-+... ..+|+|||+|.+.++|.+|+..|+|..++|+.|+|.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 3345678999999999999999999999999987222111 14799999999999999999999999999999999999
Q ss_pred CCCCCC
Q 037126 158 HNPGNK 163 (192)
Q Consensus 158 ~~~~~~ 163 (192)
+++...
T Consensus 89 ~~~~~~ 94 (101)
T 2fc9_A 89 GPRGSP 94 (101)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 866443
No 112
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.73 E-value=6.3e-17 Score=111.48 Aligned_cols=84 Identities=25% Similarity=0.425 Sum_probs=76.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
.......++|||+|||..+++++|+++|+.||.|..+.++.+ +|+|||+|.+.++|.+|+..|+|..++|+.|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 344567799999999999999999999999999999998753 68999999999999999999999999999999
Q ss_pred EEecCCCCCC
Q 037126 154 LSSGHNPGNK 163 (192)
Q Consensus 154 v~~a~~~~~~ 163 (192)
|.++++....
T Consensus 116 v~~a~~~~~~ 125 (139)
T 1u6f_A 116 VALAASGHQR 125 (139)
T ss_dssp EEESSCCCCC
T ss_pred EEECCCCCCC
Confidence 9999866554
No 113
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-17 Score=106.88 Aligned_cols=79 Identities=29% Similarity=0.494 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeE-EEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeE----
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEIL-SVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQT---- 151 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~-~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~---- 151 (192)
..+.++|||+|||..+++++|+++|++||.|. .+.++.+ +|+|||+|.+.++|.+|+..|+|..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45679999999999999999999999999999 9998764 489999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 037126 152 VRLSSGHNPG 161 (192)
Q Consensus 152 l~v~~a~~~~ 161 (192)
|+|.|+++..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999998654
No 114
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.72 E-value=1.1e-16 Score=108.14 Aligned_cols=81 Identities=25% Similarity=0.249 Sum_probs=71.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC-CCce-EEEEeCCHHHHHHHHHHhcCCeeCC--eEEEEEecCC
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-GKGC-GFVQFANRKDAEVALQKLQGTAIGK--QTVRLSSGHN 159 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~-~~g~-afv~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~~ 159 (192)
...-.|||+||++.+++++|+++|++||.|.+|.+.. .+|+ |||+|.+.++|.+|+..|+|..+.| +.|+|.|+++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 3445677999999999999999999999999998865 4677 9999999999999999999999987 8999999997
Q ss_pred CCCCC
Q 037126 160 PGNKQ 164 (192)
Q Consensus 160 ~~~~~ 164 (192)
.....
T Consensus 106 ~~l~v 110 (130)
T 3zzy_A 106 TSLNV 110 (130)
T ss_dssp SSCCC
T ss_pred CceeE
Confidence 75543
No 115
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=1.6e-16 Score=106.86 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=69.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCce-EEEEeCCHHHHHHHHHHhcCCeeCC--eEEEEEecCCCCCC
Q 037126 87 ATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGC-GFVQFANRKDAEVALQKLQGTAIGK--QTVRLSSGHNPGNK 163 (192)
Q Consensus 87 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~~~~~~ 163 (192)
..|||+||++.+++++|.++|++||.|.++.++...|+ |||+|.+.++|..|+..|+|..+.| +.|+|.||++....
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l~ 105 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 105 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCCC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcce
Confidence 34679999999999999999999999999988766685 9999999999999999999999987 69999999977654
No 116
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=112.63 Aligned_cols=84 Identities=20% Similarity=0.330 Sum_probs=74.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEE--EEEeCC------CceEEEEeCCHHHHHHHHHHhcCC----ee
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILS--VKIPVG------KGCGFVQFANRKDAEVALQKLQGT----AI 147 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~--~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~----~~ 147 (192)
+....+.++|||+|||+.+++++|+++|++||.|.. |.++.+ +|+|||+|.+. +|.+|+..|+|. .+
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 445577889999999999999999999999999966 888753 69999999999 999999999999 99
Q ss_pred CCeEEEEEecCCCCCCC
Q 037126 148 GKQTVRLSSGHNPGNKQ 164 (192)
Q Consensus 148 ~g~~l~v~~a~~~~~~~ 164 (192)
+|+.|+|.++++.....
T Consensus 96 ~gr~l~V~~a~~~~~~~ 112 (131)
T 2m2b_A 96 DGKTINVEFAKGSKRDM 112 (131)
T ss_dssp GGCCCCCEECCCSCCCC
T ss_pred CCEEEEEEECCCCCCCC
Confidence 99999999998765543
No 117
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.72 E-value=5.1e-17 Score=103.36 Aligned_cols=75 Identities=19% Similarity=0.449 Sum_probs=69.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
..++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+ .++|..++|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3578999999999999999999999999999998753 689999999999999999 899999999999999997
Q ss_pred CC
Q 037126 159 NP 160 (192)
Q Consensus 159 ~~ 160 (192)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 118
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=7.1e-17 Score=102.61 Aligned_cols=76 Identities=16% Similarity=0.250 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 160 (192)
...++|||+|||..+++++|+++|++| .|..+.+...+|+|||+|.+.++|.+|+..|+|..++|++|+|.++...
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 356789999999999999999999999 9999988888999999999999999999999999999999999999644
No 119
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=6.3e-17 Score=106.27 Aligned_cols=79 Identities=24% Similarity=0.302 Sum_probs=71.7
Q ss_pred CCCCCceEEEcCCCCCC------CHHHHHHHhccCCCeEEEEEeC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCe-
Q 037126 82 GESNNATIFVGALDSDV------SDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQ- 150 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~------~~~~l~~~f~~~g~i~~~~~~~----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~- 150 (192)
.....++|||+|||..+ ++++|+++|++||.|..+.+.+ ++|+|||+|.+.++|.+|+..|+|..++|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 34557899999999999 7899999999999999999884 479999999999999999999999999998
Q ss_pred EEEEEecCCC
Q 037126 151 TVRLSSGHNP 160 (192)
Q Consensus 151 ~l~v~~a~~~ 160 (192)
+|+|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999999744
No 120
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5e-17 Score=107.35 Aligned_cols=80 Identities=19% Similarity=0.345 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCC-eEEEEEe-------CCCceEEEEeCCHHHHHHHHHHhc--CCeeCCeEE
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGE-ILSVKIP-------VGKGCGFVQFANRKDAEVALQKLQ--GTAIGKQTV 152 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~-i~~~~~~-------~~~g~afv~f~~~~~a~~a~~~l~--g~~~~g~~l 152 (192)
..+.++|||+|||..+++++|+++|++||. |..+.++ ..+|+|||+|.+.++|.+|+..|+ +..++|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 356789999999999999999999999998 9999988 357999999999999999999996 589999999
Q ss_pred EEEecCCCCC
Q 037126 153 RLSSGHNPGN 162 (192)
Q Consensus 153 ~v~~a~~~~~ 162 (192)
+|.|+++...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999986544
No 121
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.6e-16 Score=102.90 Aligned_cols=82 Identities=24% Similarity=0.383 Sum_probs=72.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
.....+.++|||+|||..+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|+. ++..++|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 444567789999999999999999999999999999998764 5799999999999999998 47899999999
Q ss_pred EEecCCCCCC
Q 037126 154 LSSGHNPGNK 163 (192)
Q Consensus 154 v~~a~~~~~~ 163 (192)
|.++++....
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cqg_A 87 CKLPNSKQSQ 96 (103)
T ss_dssp EECCCTTCCC
T ss_pred EEecCCCCcC
Confidence 9999866544
No 122
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=6.4e-18 Score=107.94 Aligned_cols=77 Identities=19% Similarity=0.337 Sum_probs=64.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCC--CeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 87 ATIFVGALDSDVSDKDLREPFSHFG--EILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 87 ~~l~v~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
.+|||+|||..+++++|+++|++|| .|..+.++.+ +|+|||+|.+.++|.+|+..|+|..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4699999999999999999999999 9999988753 5899999999999999999999999999999999998
Q ss_pred CCCCC
Q 037126 159 NPGNK 163 (192)
Q Consensus 159 ~~~~~ 163 (192)
++...
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 65443
No 123
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=9e-17 Score=103.71 Aligned_cols=79 Identities=14% Similarity=0.202 Sum_probs=71.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEE-EeCC--CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVK-IPVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHN 159 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~-~~~~--~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 159 (192)
....++|||+|||..+++++|+++|++||.|..++ ++.+ .+.|||+|.+.++|.+|+..|+|..++|++|+|.++.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 34578999999999999999999999999999994 6664 35599999999999999999999999999999999987
Q ss_pred CC
Q 037126 160 PG 161 (192)
Q Consensus 160 ~~ 161 (192)
..
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 124
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.8e-17 Score=105.92 Aligned_cols=79 Identities=25% Similarity=0.345 Sum_probs=70.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
.....++|||+|||..+++++|+++|++||.|..+.++. .+|+|||+|.+.++|.+|+..|+|..++|+.|+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 345678999999999999999999999999997665543 26999999999999999999999999999999999
Q ss_pred ecCCC
Q 037126 156 SGHNP 160 (192)
Q Consensus 156 ~a~~~ 160 (192)
+++.+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 99754
No 125
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.4e-18 Score=109.94 Aligned_cols=79 Identities=23% Similarity=0.535 Sum_probs=72.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
.+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45689999999999999999999999999999998753 689999999999999999999999999999999999
Q ss_pred CCCCC
Q 037126 158 HNPGN 162 (192)
Q Consensus 158 ~~~~~ 162 (192)
++...
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 86544
No 126
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.71 E-value=2.5e-16 Score=106.39 Aligned_cols=82 Identities=26% Similarity=0.408 Sum_probs=74.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
.....++|||+|||..+++++|+++|+.||.|..+.+.. .+|+|||+|.+.++|.+|+..|+|..++|+.|+|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 446678999999999999999999999999999999886 469999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 037126 157 GHNPGNK 163 (192)
Q Consensus 157 a~~~~~~ 163 (192)
+.+....
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9765443
No 127
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-16 Score=101.85 Aligned_cols=78 Identities=17% Similarity=0.280 Sum_probs=71.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-----CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
.....++|||+|||..+++++|+++|+.| .|..+.++.+ +|+|||+|.+.++|.+|+. ++|..++|+.|+|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 34567899999999999999999999999 8999988763 6899999999999999999 999999999999999
Q ss_pred cCCCC
Q 037126 157 GHNPG 161 (192)
Q Consensus 157 a~~~~ 161 (192)
+++..
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98653
No 128
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.1e-16 Score=105.22 Aligned_cols=80 Identities=16% Similarity=0.410 Sum_probs=72.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-----CceEEEEeCCHHHHHHHHHHhcCCee--------
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAI-------- 147 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~-------- 147 (192)
....+.++|||+|||..+++++|+++|+.||.|..+.++.+ +|+|||+|.+.++|.+|+..|+|..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 44566789999999999999999999999999999998764 68999999999999999999999999
Q ss_pred CCeEEEEEecCCC
Q 037126 148 GKQTVRLSSGHNP 160 (192)
Q Consensus 148 ~g~~l~v~~a~~~ 160 (192)
.+++|.|.|++++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999999854
No 129
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.71 E-value=1.5e-16 Score=111.65 Aligned_cols=83 Identities=24% Similarity=0.380 Sum_probs=75.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
....+.++|||+|||..+++++|.++|++||.|..|.++.+ +++|||+|.+.++|.+|+..|++..++|+.|+|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34457799999999999999999999999999999998753 589999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 037126 155 SSGHNPGNK 163 (192)
Q Consensus 155 ~~a~~~~~~ 163 (192)
.|+++....
T Consensus 114 ~~a~~~~~~ 122 (156)
T 1h2v_Z 114 DWDAGFKEG 122 (156)
T ss_dssp EEESCCCTT
T ss_pred EECCCCCCc
Confidence 999865543
No 130
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=1.4e-17 Score=108.41 Aligned_cols=76 Identities=22% Similarity=0.380 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCC------CCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCC-e
Q 037126 84 SNNATIFVGALDS------DVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGK-Q 150 (192)
Q Consensus 84 ~~~~~l~v~~lp~------~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g-~ 150 (192)
...++|||+|||. .+++++|+++|++||.|..+.++. ++|+|||+|.+.++|.+|+..|+|..++| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 999999999999999999999874 36999999999999999999999999999 9
Q ss_pred EEEEEecCC
Q 037126 151 TVRLSSGHN 159 (192)
Q Consensus 151 ~l~v~~a~~ 159 (192)
.|+|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999964
No 131
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=1.3e-16 Score=106.44 Aligned_cols=78 Identities=15% Similarity=0.348 Sum_probs=72.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC---CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~---~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 160 (192)
.+.++|||+|||..+++++|.++|++||.|..+.++. ++|+|||+|.+.++|.+|+..|+|..++|+.|.|.|+++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 5578999999999999999999999999999999875 3689999999999999999999999999999999999754
Q ss_pred C
Q 037126 161 G 161 (192)
Q Consensus 161 ~ 161 (192)
.
T Consensus 86 ~ 86 (115)
T 3lqv_A 86 R 86 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 132
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.2e-17 Score=106.64 Aligned_cols=75 Identities=17% Similarity=0.322 Sum_probs=69.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
....++|||+|||..+++++|+++|++||.|..+.++. ++|+|||+|.+.++|.+|+. ++|..++|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 35578999999999999999999999999999999986 47999999999999999999 8999999999999987
Q ss_pred C
Q 037126 158 H 158 (192)
Q Consensus 158 ~ 158 (192)
.
T Consensus 87 ~ 87 (103)
T 1s79_A 87 D 87 (103)
T ss_dssp H
T ss_pred h
Confidence 4
No 133
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.70 E-value=1.8e-16 Score=109.20 Aligned_cols=78 Identities=28% Similarity=0.586 Sum_probs=71.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
.....+.++|||+|||..+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|+..|+|..++|+.|+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344567899999999999999999999999999999998763 79999999999999999999999999999999
Q ss_pred EEec
Q 037126 154 LSSG 157 (192)
Q Consensus 154 v~~a 157 (192)
|.||
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 134
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.8e-16 Score=105.70 Aligned_cols=82 Identities=22% Similarity=0.397 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCe----EEEEEeC--CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEI----LSVKIPV--GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i----~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
..+.++|||+|||..+++++|.++|++||.| ..+.+.. .+|+|||+|.+.++|.+|+..|+|..++|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567899999999999999999999999998 5565554 469999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 037126 157 GHNPGNKQ 164 (192)
Q Consensus 157 a~~~~~~~ 164 (192)
+++.....
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpx_A 102 GKNKKQRS 109 (115)
T ss_dssp CCCCSCCC
T ss_pred ccCCCCCC
Confidence 98765543
No 135
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2e-17 Score=104.42 Aligned_cols=75 Identities=27% Similarity=0.478 Sum_probs=69.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
.+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 56789999999999999999999999999999998864 689999999999999999999999999999888776
Q ss_pred C
Q 037126 158 H 158 (192)
Q Consensus 158 ~ 158 (192)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 136
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.70 E-value=1.6e-16 Score=100.69 Aligned_cols=76 Identities=28% Similarity=0.564 Sum_probs=68.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
....+.++|||+|||..+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|+. +++..++|+.|+|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 34567889999999999999999999999999999998753 5899999999999999996 5888999999999
Q ss_pred Eec
Q 037126 155 SSG 157 (192)
Q Consensus 155 ~~a 157 (192)
.+|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
No 137
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.2e-17 Score=106.97 Aligned_cols=77 Identities=23% Similarity=0.430 Sum_probs=70.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
....++|||+|||..+++++|+++|+.||.|..+.++. .+|+|||+|.+.++|.+|+ .|+|..++|+.|+|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 34568999999999999999999999999999999975 3689999999999999999 9999999999999999
Q ss_pred cCCC
Q 037126 157 GHNP 160 (192)
Q Consensus 157 a~~~ 160 (192)
+++.
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 9643
No 138
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=4.8e-17 Score=105.91 Aligned_cols=79 Identities=27% Similarity=0.486 Sum_probs=68.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-------KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 152 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l 152 (192)
.......++|||+|||..+++++|+++|+.|| |..+.+..+ +|+|||+|.+.++|.+|+ .|+|..++|+.|
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 34456789999999999999999999999999 999998753 589999999999999999 899999999999
Q ss_pred EEEecCCC
Q 037126 153 RLSSGHNP 160 (192)
Q Consensus 153 ~v~~a~~~ 160 (192)
+|.++++.
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 99999754
No 139
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.69 E-value=2.1e-16 Score=110.72 Aligned_cols=80 Identities=25% Similarity=0.237 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC--CCceEEEEeCCHHHHHHHHHHhcCCeeCC--eEEEEEecCC
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV--GKGCGFVQFANRKDAEVALQKLQGTAIGK--QTVRLSSGHN 159 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a~~ 159 (192)
.....|||+||++.+++++|+++|++||.|.+|.+.. .+++|||+|.+.++|.+|++.|+|..+.| ++|+|.|+++
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 3346688999999999999999999999999999874 36799999999999999999999999965 9999999997
Q ss_pred CCCC
Q 037126 160 PGNK 163 (192)
Q Consensus 160 ~~~~ 163 (192)
....
T Consensus 124 ~~l~ 127 (164)
T 1sjr_A 124 TSLN 127 (164)
T ss_dssp SSCC
T ss_pred Cccc
Confidence 6544
No 140
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.3e-16 Score=100.72 Aligned_cols=78 Identities=23% Similarity=0.361 Sum_probs=68.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCc-eEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCC
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKG-CGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGN 162 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g-~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 162 (192)
...++|||+|||..+++++|+++|++||.|..|.+.+..+ +|||+|.+.++|.+|+. |+|..++|+.|.|.++.+...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 4567999999999999999999999999999983333222 99999999999999999 999999999999999875443
No 141
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=106.18 Aligned_cols=80 Identities=18% Similarity=0.414 Sum_probs=72.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
..+.++|||+|||..+++++|+++|+.||.|..+.++.+ +|+|||+|.+.++|.+|+.. ++..++|+.|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 344689999999999999999999999999999998864 68999999999999999997 99999999999999
Q ss_pred cCCCCCC
Q 037126 157 GHNPGNK 163 (192)
Q Consensus 157 a~~~~~~ 163 (192)
+++....
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9866554
No 142
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.69 E-value=1.7e-16 Score=106.74 Aligned_cols=79 Identities=23% Similarity=0.456 Sum_probs=72.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPG 161 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 161 (192)
...+.++|||+|+ .+++++|+++|++||.|..+.+...+|+|||+|.+.++|.+|+..|+|..++|+.|.|.|++++.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 3456789999995 69999999999999999999999999999999999999999999999999999999999998654
Q ss_pred C
Q 037126 162 N 162 (192)
Q Consensus 162 ~ 162 (192)
.
T Consensus 113 ~ 113 (121)
T 2bz2_A 113 M 113 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 143
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.69 E-value=1.4e-16 Score=107.69 Aligned_cols=78 Identities=23% Similarity=0.458 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
.+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+ .|+|..++|+.|+|.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34689999999999999999999999999999998753 689999999999999999 79999999999999999
Q ss_pred CCCCC
Q 037126 158 HNPGN 162 (192)
Q Consensus 158 ~~~~~ 162 (192)
++...
T Consensus 113 ~~~~~ 117 (124)
T 2jwn_A 113 RTNMP 117 (124)
T ss_dssp SCCCS
T ss_pred CCCCC
Confidence 85533
No 144
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.69 E-value=2.6e-16 Score=104.02 Aligned_cols=82 Identities=23% Similarity=0.420 Sum_probs=69.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
.....+.++|||+|||..+++++|+++|+.||.|..+.+..+ +|+|||+|.+.++|.+|+..+ +..++|+.|+
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 344566789999999999999999999999999999999763 689999999999999999976 5999999999
Q ss_pred EEecCCCCC
Q 037126 154 LSSGHNPGN 162 (192)
Q Consensus 154 v~~a~~~~~ 162 (192)
|.++.+...
T Consensus 98 V~~a~~~~~ 106 (109)
T 2rs2_A 98 PKVAFPRRA 106 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999986543
No 145
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=5.3e-16 Score=101.19 Aligned_cols=84 Identities=26% Similarity=0.386 Sum_probs=69.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC---CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~---~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
.....+.++|||+|||..+++++|+++|+.|+.+.-+.... .+|+|||+|.+.++|.+|+..|+|..++|+.|+|.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34456789999999999999999999999885433332211 258999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 037126 157 GHNPGNK 163 (192)
Q Consensus 157 a~~~~~~ 163 (192)
+++....
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9866543
No 146
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=111.44 Aligned_cols=77 Identities=19% Similarity=0.359 Sum_probs=69.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCC--CeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFG--EILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
...++|||+|||+.+++++|+++|+.|| .|..+.++.+ +|+|||+|.+.++|.+|+..|+|..++|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 9999998753 5899999999999999999999999999999999
Q ss_pred ecCCC
Q 037126 156 SGHNP 160 (192)
Q Consensus 156 ~a~~~ 160 (192)
++.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99754
No 147
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.68 E-value=5.4e-17 Score=104.53 Aligned_cols=77 Identities=23% Similarity=0.287 Sum_probs=67.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
..+.++|||+|||..+++++|+++|++||.|..+.++. .+|+|||+|.+.++|.+|+..|+|..++|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999997766553 368999999999999999999999999999999999
Q ss_pred cCC
Q 037126 157 GHN 159 (192)
Q Consensus 157 a~~ 159 (192)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 863
No 148
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5e-16 Score=101.77 Aligned_cols=79 Identities=25% Similarity=0.390 Sum_probs=70.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEE-EEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILS-VKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~-~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
.....++|||+|||+.+++++|+++|++||.|.. +.++. .+|+|||+|.+.++|.+|+.. ++..++|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 3456789999999999999999999999999987 77764 369999999999999999997 9999999999999
Q ss_pred ecCCCC
Q 037126 156 SGHNPG 161 (192)
Q Consensus 156 ~a~~~~ 161 (192)
++....
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987543
No 149
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.5e-16 Score=98.78 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=66.0
Q ss_pred CCCce-EEEcCCCCCCCHHH----HHHHhccC-CCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 84 SNNAT-IFVGALDSDVSDKD----LREPFSHF-GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 84 ~~~~~-l~v~~lp~~~~~~~----l~~~f~~~-g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
.++.+ |||+|||+.+++++ |.++|++| |.|..|. .|+|||.|.+.++|.+|++.|+|..+.|++|+|.||
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 44555 99999999999887 56899999 5999982 399999999999999999999999999999999999
Q ss_pred CCCCC
Q 037126 158 HNPGN 162 (192)
Q Consensus 158 ~~~~~ 162 (192)
+....
T Consensus 82 ~~~sd 86 (96)
T 2diu_A 82 PKNRE 86 (96)
T ss_dssp CCSCC
T ss_pred CCCcc
Confidence 85543
No 150
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.68 E-value=2.2e-16 Score=99.96 Aligned_cols=72 Identities=18% Similarity=0.441 Sum_probs=68.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccC----C-------CeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEE
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHF----G-------EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 152 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l 152 (192)
.+.++|||+|||..+++++|+++|++| | .|..+.+..++|+|||+|.+.++|.+|+ .|+|..++|+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 457899999999999999999999999 8 9999999999999999999999999999 999999999999
Q ss_pred EEEe
Q 037126 153 RLSS 156 (192)
Q Consensus 153 ~v~~ 156 (192)
+|..
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9874
No 151
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=3e-16 Score=101.23 Aligned_cols=81 Identities=26% Similarity=0.381 Sum_probs=71.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC--CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV--GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
....+.++|||+|||..+++++|+++|+.||.|..+ ... .+|+|||+|.+.++|.+|+..|+|..++|+.|+|.+++
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 344677999999999999999999999999988777 222 46999999999999999999999999999999999997
Q ss_pred CCCC
Q 037126 159 NPGN 162 (192)
Q Consensus 159 ~~~~ 162 (192)
+...
T Consensus 90 ~~~~ 93 (96)
T 1fjc_A 90 EKGG 93 (96)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 6543
No 152
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.67 E-value=2.3e-16 Score=105.27 Aligned_cols=76 Identities=21% Similarity=0.367 Sum_probs=67.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeE-----EEEEecC
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQT-----VRLSSGH 158 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~-----l~v~~a~ 158 (192)
...++|||+|||..+++++|.++|++||.|..+.++.+ |+|||+|.+.++|.+|+..|+|..++|+. ++|..+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 45689999999999999999999999999999999888 99999999999999999999999999998 7777765
Q ss_pred CC
Q 037126 159 NP 160 (192)
Q Consensus 159 ~~ 160 (192)
+.
T Consensus 93 ~~ 94 (115)
T 3beg_B 93 PR 94 (115)
T ss_dssp --
T ss_pred CC
Confidence 43
No 153
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.67 E-value=5.4e-16 Score=113.62 Aligned_cols=77 Identities=19% Similarity=0.335 Sum_probs=72.0
Q ss_pred CCCceEEEcCCC-CCCCHHHHHHHhccCCCeEEEEEeCC-CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 037126 84 SNNATIFVGALD-SDVSDKDLREPFSHFGEILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 84 ~~~~~l~v~~lp-~~~~~~~l~~~f~~~g~i~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 160 (192)
.++++|||+||| ..+++++|.++|++||.|.+++++.+ +|+|||+|.+.++|..|+..|||..+.|++|+|.+++.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 356899999999 89999999999999999999999874 799999999999999999999999999999999999754
No 154
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.67 E-value=8.6e-17 Score=100.61 Aligned_cols=68 Identities=28% Similarity=0.376 Sum_probs=63.2
Q ss_pred ceEEEcCCCCCC------CHHHHHHHhccCCCeEEEEEeC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCe-EEEE
Q 037126 87 ATIFVGALDSDV------SDKDLREPFSHFGEILSVKIPV----GKGCGFVQFANRKDAEVALQKLQGTAIGKQ-TVRL 154 (192)
Q Consensus 87 ~~l~v~~lp~~~------~~~~l~~~f~~~g~i~~~~~~~----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~-~l~v 154 (192)
++|||+|||..+ ++++|+++|++||.|..+.+.+ ++|+|||+|.+.++|.+|+..|+|..++|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 7799999999999999999874 479999999999999999999999999999 8876
No 155
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.66 E-value=8.8e-16 Score=97.74 Aligned_cols=78 Identities=28% Similarity=0.499 Sum_probs=62.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC-CCceEEEEeCCHHHHHHHHHHhcCCee--CCeEEEEEec
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-GKGCGFVQFANRKDAEVALQKLQGTAI--GKQTVRLSSG 157 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a 157 (192)
....+..+|||+|||+++++++|+++|++||.|.++.++. ++|+|||+|.+.++|.+ +++..+ .|+.|.|.++
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 3456778999999999999999999999999999999886 58999999999999883 556654 5999999999
Q ss_pred CCCCC
Q 037126 158 HNPGN 162 (192)
Q Consensus 158 ~~~~~ 162 (192)
.++..
T Consensus 82 ~~k~~ 86 (89)
T 3d2w_A 82 EPKHN 86 (89)
T ss_dssp C----
T ss_pred CCCCc
Confidence 86543
No 156
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.66 E-value=3.5e-17 Score=104.39 Aligned_cols=75 Identities=29% Similarity=0.542 Sum_probs=66.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 037126 87 ATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 87 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 160 (192)
++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.+ |.+|+..|+|..++|+.|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999998753 689999999999 99999999999999999999999765
Q ss_pred CC
Q 037126 161 GN 162 (192)
Q Consensus 161 ~~ 162 (192)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 157
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=4.3e-16 Score=104.37 Aligned_cols=79 Identities=16% Similarity=0.252 Sum_probs=70.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCC---eEEEEEeCC-----CceEEEEeCCHHHHHHHHHHhcCCeeCCeEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGE---ILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTV 152 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---i~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l 152 (192)
......++|||+|||+.+++++|+++|+.||. |..+.++.+ +|+|||+|.+.++|.+|+. +++..++|+.|
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 33456789999999999999999999999998 888888753 6899999999999999999 99999999999
Q ss_pred EEEecCCC
Q 037126 153 RLSSGHNP 160 (192)
Q Consensus 153 ~v~~a~~~ 160 (192)
+|.++...
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998643
No 158
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.5e-16 Score=103.68 Aligned_cols=79 Identities=15% Similarity=0.142 Sum_probs=71.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCe-EEEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEI-LSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i-~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
...+.++|||+|||+.+++++|+++|+.||.| ..+.++. .+|+|||+|.+.++|.+|+.. ++..++|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 44567899999999999999999999999999 7888875 479999999999999999997 9999999999999
Q ss_pred ecCCCC
Q 037126 156 SGHNPG 161 (192)
Q Consensus 156 ~a~~~~ 161 (192)
++.+..
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997543
No 159
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.66 E-value=1.4e-16 Score=98.05 Aligned_cols=69 Identities=25% Similarity=0.465 Sum_probs=64.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 88 TIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 88 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
.|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+. ++|..++|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 4899999999999999999999999999988753 5899999999999999998 9999999999999886
No 160
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=9.6e-16 Score=101.07 Aligned_cols=74 Identities=20% Similarity=0.305 Sum_probs=67.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
.....+|||+|||+.+++++|+++|+.| .|..+.++. ++|+|||+|.+.++|.+|+ .+++..++|+.|+|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3446799999999999999999999999 899998875 3799999999999999999 69999999999999888
Q ss_pred C
Q 037126 158 H 158 (192)
Q Consensus 158 ~ 158 (192)
.
T Consensus 91 ~ 91 (109)
T 2dnn_A 91 T 91 (109)
T ss_dssp C
T ss_pred C
Confidence 5
No 161
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.1e-16 Score=97.75 Aligned_cols=70 Identities=24% Similarity=0.510 Sum_probs=65.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 87 ATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 87 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..++ ..++|++|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 46999999999999999999999999999998763 6899999999999999999999 9999999999987
No 162
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=1.7e-15 Score=98.54 Aligned_cols=78 Identities=21% Similarity=0.336 Sum_probs=68.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEe------CCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIP------VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~------~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
..+.++|||+|||..+++++|+++|+.||.|.. .++ .++|+|||+|.+.++|.+|+. |+|..++|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 456789999999999999999999999997765 222 358999999999999999999 999999999999999
Q ss_pred cCCCCC
Q 037126 157 GHNPGN 162 (192)
Q Consensus 157 a~~~~~ 162 (192)
+++...
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 986543
No 163
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.7e-16 Score=98.34 Aligned_cols=78 Identities=29% Similarity=0.504 Sum_probs=66.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCC
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGN 162 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 162 (192)
.+.++|||+|||..+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|.+|... ...+.|+.|+|.+++++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 45689999999999999999999999999999998764 89999999999999754221 3345899999999986654
Q ss_pred C
Q 037126 163 K 163 (192)
Q Consensus 163 ~ 163 (192)
.
T Consensus 81 ~ 81 (88)
T 1wf0_A 81 S 81 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 164
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.64 E-value=6.9e-16 Score=106.77 Aligned_cols=80 Identities=24% Similarity=0.358 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEE--------EEEe---CCCceEEEEeCCHHHHHHHHHHhcCCeeCCeE
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILS--------VKIP---VGKGCGFVQFANRKDAEVALQKLQGTAIGKQT 151 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~--------~~~~---~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~ 151 (192)
..+.++|||+|||+.+++++|.++|++||.|.. +.+. ..+|+|||+|.+.++|.+|+..|||..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 456789999999999999999999999998865 3333 35799999999999999999999999999999
Q ss_pred EEEEecCCCCC
Q 037126 152 VRLSSGHNPGN 162 (192)
Q Consensus 152 l~v~~a~~~~~ 162 (192)
|.|.|+++...
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999976543
No 165
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.64 E-value=4.7e-16 Score=115.69 Aligned_cols=80 Identities=24% Similarity=0.478 Sum_probs=72.8
Q ss_pred CCCCceEEEcCCCCCC---------CHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCee------
Q 037126 83 ESNNATIFVGALDSDV---------SDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAI------ 147 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~---------~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~------ 147 (192)
....++|||+||+..+ ++++|+++|++||.|..|.++.++|+|||+|.+.++|..|+..|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 5678999999999998 7999999999999999999999999999999999999999999999999
Q ss_pred ------CCeEEEEEecCCCCC
Q 037126 148 ------GKQTVRLSSGHNPGN 162 (192)
Q Consensus 148 ------~g~~l~v~~a~~~~~ 162 (192)
.|+.|.|.||+....
T Consensus 211 e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TGGGGGGSCCCEEEECC----
T ss_pred cccccCCCCEEEEEEccCCCC
Confidence 899999999985543
No 166
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.1e-16 Score=105.95 Aligned_cols=78 Identities=18% Similarity=0.297 Sum_probs=68.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEE-EEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILSV-KIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~-~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
......+|||+|||+.+++++|.++|+.||.|..+ .+.. .+|+|||+|.+.++|.+|+. ++|..++|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34567899999999999999999999999998763 3331 36899999999999999999 99999999999999
Q ss_pred ecCCC
Q 037126 156 SGHNP 160 (192)
Q Consensus 156 ~a~~~ 160 (192)
++...
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 99643
No 167
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.63 E-value=2.5e-15 Score=106.17 Aligned_cols=77 Identities=26% Similarity=0.484 Sum_probs=71.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
+.++|||+|||..+++++|+++|+.||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|++|+|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4689999999999999999999999999999998753 4899999999999999999999999999999999997
Q ss_pred CCC
Q 037126 159 NPG 161 (192)
Q Consensus 159 ~~~ 161 (192)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 554
No 168
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.63 E-value=2.7e-15 Score=111.66 Aligned_cols=79 Identities=24% Similarity=0.445 Sum_probs=73.8
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeCC-CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 037126 82 GESNNATIFVGALDS-DVSDKDLREPFSHFGEILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHN 159 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 159 (192)
...+.++|||+|||. .+++++|+++|+.||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+.|+.|.|.+++.
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 346789999999999 9999999999999999999999876 59999999999999999999999999999999999975
Q ss_pred C
Q 037126 160 P 160 (192)
Q Consensus 160 ~ 160 (192)
.
T Consensus 110 ~ 110 (229)
T 2adc_A 110 Q 110 (229)
T ss_dssp C
T ss_pred c
Confidence 5
No 169
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=2.5e-17 Score=110.08 Aligned_cols=81 Identities=23% Similarity=0.393 Sum_probs=73.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEE--------EEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeC
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILS--------VKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIG 148 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~ 148 (192)
..+.++|||+|||..+++++|+++|++||.|.. +.++.+ +|+|||+|.+.++|.+|+..|+|..++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 356789999999999999999999999999988 777653 689999999999999999999999999
Q ss_pred CeEEEEEecCCCCCC
Q 037126 149 KQTVRLSSGHNPGNK 163 (192)
Q Consensus 149 g~~l~v~~a~~~~~~ 163 (192)
|++|+|.+++++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999866544
No 170
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.62 E-value=3.6e-15 Score=105.08 Aligned_cols=75 Identities=31% Similarity=0.553 Sum_probs=70.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCC------ceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 037126 86 NATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGK------GCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHN 159 (192)
Q Consensus 86 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~------g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 159 (192)
.++|||+|||..+++++|.++|+.||.|..+.+++++ |+|||+|.+.++|.+|+..|+|..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5789999999999999999999999999999988653 8999999999999999999999999999999999975
Q ss_pred C
Q 037126 160 P 160 (192)
Q Consensus 160 ~ 160 (192)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 171
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.8e-15 Score=98.67 Aligned_cols=79 Identities=22% Similarity=0.341 Sum_probs=69.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-----CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
.....++|||+|||+.+++++|+++|++||.+ .+.++.+ +|+|||+|.+.++|.+|+. +++..++|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 34567899999999999999999999999954 8888753 6899999999999999995 799999999999999
Q ss_pred cCCCCC
Q 037126 157 GHNPGN 162 (192)
Q Consensus 157 a~~~~~ 162 (192)
+.....
T Consensus 89 ~~~~~~ 94 (102)
T 1wez_A 89 NSTAGT 94 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 875543
No 172
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.62 E-value=7.2e-16 Score=105.57 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=70.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCC---eEEEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGE---ILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 152 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---i~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l 152 (192)
......++|||+|||+++++++|+++|++||. |..+.++. ++|+|||+|.+.++|.+|+. +++..++|+.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 34456789999999999999999999999999 78888874 36899999999999999999 99999999999
Q ss_pred EEEecCC
Q 037126 153 RLSSGHN 159 (192)
Q Consensus 153 ~v~~a~~ 159 (192)
+|.++..
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9999853
No 173
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.62 E-value=4e-15 Score=112.88 Aligned_cols=80 Identities=28% Similarity=0.541 Sum_probs=74.9
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHN 159 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 159 (192)
.....+.++|||+|||..+++++|.++|+.||.|..+.+.+++|+|||+|.+.++|..|+..|+|..+.|+.|.|.++.+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 33446678999999999999999999999999999999999999999999999999999999999999999999999974
No 174
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.61 E-value=5.5e-16 Score=101.13 Aligned_cols=78 Identities=27% Similarity=0.509 Sum_probs=70.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
.....++|||+|||..+++++|+++|+.||.|..+.+.. .+|+|||+|.+.++|.+|+. ++..++|+.|.|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 345678999999999999999999999999999999886 36999999999999999999 99999999999999
Q ss_pred cCCCC
Q 037126 157 GHNPG 161 (192)
Q Consensus 157 a~~~~ 161 (192)
+.+..
T Consensus 83 a~~~~ 87 (102)
T 2xs2_A 83 AIRKQ 87 (102)
T ss_dssp EEECC
T ss_pred CCcCc
Confidence 97543
No 175
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.61 E-value=2.1e-15 Score=107.95 Aligned_cols=79 Identities=27% Similarity=0.442 Sum_probs=72.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
...+.++|||+|||..+++++|.++|+.||.|..|.+.. .+|+|||+|.+.++|.+|+..|+|..++|+.|+|.|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345678999999999999999999999999999999876 369999999999999999999999999999999999
Q ss_pred cCCC
Q 037126 157 GHNP 160 (192)
Q Consensus 157 a~~~ 160 (192)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 9754
No 176
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.61 E-value=8.5e-16 Score=101.15 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=70.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCC---eEEEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGE---ILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 152 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---i~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l 152 (192)
......++|||+|||+.+++++|+++|+.||. |..+.++. .+|+|||+|.+.++|.+|+. +++..++|+.|
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 34466789999999999999999999999988 88898875 36899999999999999999 99999999999
Q ss_pred EEEecCC
Q 037126 153 RLSSGHN 159 (192)
Q Consensus 153 ~v~~a~~ 159 (192)
+|.++.+
T Consensus 85 ~V~~a~~ 91 (107)
T 2lmi_A 85 EVYEINN 91 (107)
T ss_dssp CCEECCH
T ss_pred EEEECCH
Confidence 9999864
No 177
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.61 E-value=4e-15 Score=104.76 Aligned_cols=76 Identities=28% Similarity=0.506 Sum_probs=70.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC-----CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCC
Q 037126 87 ATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPG 161 (192)
Q Consensus 87 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 161 (192)
++|||+|||..+++++|.++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..++|..+.|+.|.|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 57999999999999999999999999999999753 5899999999999999999999999999999999997554
Q ss_pred C
Q 037126 162 N 162 (192)
Q Consensus 162 ~ 162 (192)
.
T Consensus 81 ~ 81 (166)
T 3md3_A 81 Q 81 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 178
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.2e-14 Score=95.15 Aligned_cols=83 Identities=18% Similarity=0.299 Sum_probs=70.9
Q ss_pred CCCCCCceEEEcCCCCCCC-----------HHHHHHHhccCCCeEEEEEeC--CCceEEEEeCCHHHHHHHHHHhcCCee
Q 037126 81 DGESNNATIFVGALDSDVS-----------DKDLREPFSHFGEILSVKIPV--GKGCGFVQFANRKDAEVALQKLQGTAI 147 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~-----------~~~l~~~f~~~g~i~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~g~~~ 147 (192)
....++++|+|.||..... +++|+++|++||.|..+.+.. .+|+|||+|.+.++|.+|+..|+|..+
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3456789999999954432 579999999999999997753 479999999999999999999999999
Q ss_pred CCeEEEEEecCCCCCC
Q 037126 148 GKQTVRLSSGHNPGNK 163 (192)
Q Consensus 148 ~g~~l~v~~a~~~~~~ 163 (192)
+|++|+|.|+.+....
T Consensus 90 ~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 90 GGRQITAQAWDGTTDY 105 (112)
T ss_dssp TTEECEEEECCSCCCS
T ss_pred CCcEEEEEEeCCCCCc
Confidence 9999999999865443
No 179
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.60 E-value=5.1e-15 Score=119.75 Aligned_cols=83 Identities=22% Similarity=0.471 Sum_probs=75.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
..+.++|||+|||..+++++|.++|++||.|..|.|+.+ +|+|||+|.+.++|.+|+..|||..|+|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456789999999999999999999999999999998753 69999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 037126 157 GHNPGNKQW 165 (192)
Q Consensus 157 a~~~~~~~~ 165 (192)
+.+.....+
T Consensus 179 a~~~~~~~~ 187 (437)
T 3pgw_S 179 ERGRTVKGW 187 (437)
T ss_pred eCCCCCCCC
Confidence 986655443
No 180
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.60 E-value=5.7e-16 Score=95.30 Aligned_cols=69 Identities=28% Similarity=0.605 Sum_probs=63.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 88 TIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 88 ~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
+|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+.. ++..++|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 4899999999999999999999999999988753 68999999999999999994 899999999999875
No 181
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.60 E-value=1.5e-15 Score=113.01 Aligned_cols=75 Identities=20% Similarity=0.340 Sum_probs=68.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCC--CeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEe
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSHFG--EILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSS 156 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~~g--~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 156 (192)
..++|||+|||+.+++++|+++|++|| .|..|.|+.+ +|+|||+|.+.++|.+|+..|++..|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 9999998753 58999999999999999999999999999999999
Q ss_pred cCC
Q 037126 157 GHN 159 (192)
Q Consensus 157 a~~ 159 (192)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 854
No 182
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.60 E-value=4.8e-15 Score=107.31 Aligned_cols=101 Identities=18% Similarity=0.355 Sum_probs=77.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 80 SDGESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
+....+.++|||+|||..+++++|+++|+.||.|..+.++.+ +|+|||+|.+.++|.+|+.. ++..++|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~ 85 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVE 85 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEee
Confidence 344567899999999999999999999999999999998753 58999999999999999985 99999999999
Q ss_pred EEecCCCCCCCCCCCccchhccccCccccCCCC
Q 037126 154 LSSGHNPGNKQWRGDHINLIALAQDATYVNNRN 186 (192)
Q Consensus 154 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (192)
|.++......... .........|+.+++
T Consensus 86 v~~~~~~~~~~~~-----~~~~~~~~l~V~nLp 113 (196)
T 1l3k_A 86 PKRAVSREDSQRP-----GAHLTVKKIFVGGIK 113 (196)
T ss_dssp EEECCC----------------CCSEEEEECCT
T ss_pred eecccCccccccc-----ccCCCcceEEEeCCC
Confidence 9999755433211 112233556666654
No 183
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.60 E-value=5.1e-16 Score=106.65 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=68.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
....++|||+|||+++++++|+++|++|| +..|.++. ++|+|||+|.+.++|.+|+ .+++..++|+.|+|.++
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 35568999999999999999999999999 67888875 3789999999999999999 68999999999999998
Q ss_pred CCCCC
Q 037126 158 HNPGN 162 (192)
Q Consensus 158 ~~~~~ 162 (192)
.....
T Consensus 121 ~~~~~ 125 (139)
T 2hgn_A 121 STTGA 125 (139)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 75543
No 184
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.59 E-value=7.8e-15 Score=108.02 Aligned_cols=77 Identities=32% Similarity=0.462 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
.+.++|||+|||+.+++++|+++|++||.|.+|.++++ +|+|||+|.+.++|.+|+..+++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 46689999999999999999999999999999998753 589999999999999999999999999999999998
Q ss_pred CCC
Q 037126 158 HNP 160 (192)
Q Consensus 158 ~~~ 160 (192)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 643
No 185
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.59 E-value=6.9e-15 Score=106.87 Aligned_cols=76 Identities=25% Similarity=0.458 Sum_probs=71.5
Q ss_pred CCceEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeCC-CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCC
Q 037126 85 NNATIFVGALDS-DVSDKDLREPFSHFGEILSVKIPVG-KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNP 160 (192)
Q Consensus 85 ~~~~l~v~~lp~-~~~~~~l~~~f~~~g~i~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 160 (192)
.+++|||+|||. .+++++|+++|+.||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+.|+.|.|.+++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 457999999999 9999999999999999999999876 599999999999999999999999999999999999755
No 186
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.58 E-value=1.4e-14 Score=94.79 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=67.1
Q ss_pred CCCCceEEEcCCCC-----CCCHHHHHHHhccCCCeEEEEEeC-------CCceEEEEeCCHHHHHHHHHHhcCCeeCCe
Q 037126 83 ESNNATIFVGALDS-----DVSDKDLREPFSHFGEILSVKIPV-------GKGCGFVQFANRKDAEVALQKLQGTAIGKQ 150 (192)
Q Consensus 83 ~~~~~~l~v~~lp~-----~~~~~~l~~~f~~~g~i~~~~~~~-------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~ 150 (192)
..++++|+|.||.. +-.+++|++.|++||.|.++.++. ++|++||+|.+.++|.+|+..|||+.++|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35678999999963 236799999999999999998874 269999999999999999999999999999
Q ss_pred EEEEEecC
Q 037126 151 TVRLSSGH 158 (192)
Q Consensus 151 ~l~v~~a~ 158 (192)
.|.|.|+.
T Consensus 85 ~i~v~~a~ 92 (105)
T 2pe8_A 85 VVKACFYN 92 (105)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 99999995
No 187
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.58 E-value=2.3e-15 Score=110.61 Aligned_cols=77 Identities=22% Similarity=0.518 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
...++|||+|||.++++++|+++|+.||.|..+.++. .+|+|||+|.+.++|.+|+..|+|..++|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 3467999999999999999999999999999999975 3799999999999999999999999999999999988
Q ss_pred CCC
Q 037126 158 HNP 160 (192)
Q Consensus 158 ~~~ 160 (192)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 654
No 188
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=2.7e-14 Score=103.53 Aligned_cols=74 Identities=18% Similarity=0.325 Sum_probs=67.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHN 159 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 159 (192)
..++|||+|||..+++++|+++|++||.|..+.+.+ .+|+|||+|.+.++|.+|+..+ +..++|+.|.|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 458999999999999999999999999999999885 3699999999999999999865 4699999999999864
No 189
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.58 E-value=1.4e-14 Score=102.66 Aligned_cols=75 Identities=19% Similarity=0.437 Sum_probs=70.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccC----C-------CeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSHF----G-------EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
+.++|||+|||..+++++|+++|++| | .|..+.+.+++|+|||+|.+.++|.+|+ .++|..+.|++|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 56899999999999999999999999 7 8889999999999999999999999999 7999999999999
Q ss_pred EEecCCC
Q 037126 154 LSSGHNP 160 (192)
Q Consensus 154 v~~a~~~ 160 (192)
|.++...
T Consensus 82 v~~~~~~ 88 (172)
T 2g4b_A 82 IRRPHDY 88 (172)
T ss_dssp EECCSSC
T ss_pred ecCCccc
Confidence 9998644
No 190
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.57 E-value=2.4e-14 Score=109.57 Aligned_cols=81 Identities=26% Similarity=0.471 Sum_probs=73.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHH----HHhccCCCeEEEEEeC---CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLR----EPFSHFGEILSVKIPV---GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~i~~~~~~~---~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
....+.++|||+|||..+++++|+ ++|++||.|..|.+.+ .+|+|||+|.+.++|.+|+..|+|..+.|+.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 345678999999999999999976 8999999999999876 579999999999999999999999999999999
Q ss_pred EEecCCCC
Q 037126 154 LSSGHNPG 161 (192)
Q Consensus 154 v~~a~~~~ 161 (192)
|.|++...
T Consensus 84 v~~a~~~~ 91 (282)
T 3pgw_A 84 IQYAKTDS 91 (282)
T ss_pred EEEeccCc
Confidence 99997554
No 191
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.57 E-value=2.1e-14 Score=104.03 Aligned_cols=75 Identities=19% Similarity=0.423 Sum_probs=69.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccC----C-------CeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSHF----G-------EILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
..++|||+|||..+++++|.++|+.| | .|..+.+.+++|+|||+|.+.++|.+|+ .|+|..+.|+.|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 46899999999999999999999999 6 7888888899999999999999999999 7999999999999
Q ss_pred EEecCCC
Q 037126 154 LSSGHNP 160 (192)
Q Consensus 154 v~~a~~~ 160 (192)
|.++...
T Consensus 82 v~~~~~~ 88 (198)
T 2yh0_A 82 IRRPHDY 88 (198)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9998754
No 192
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=4.6e-14 Score=93.84 Aligned_cols=72 Identities=22% Similarity=0.439 Sum_probs=62.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC---------CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV---------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~---------~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
...++|||+|||+.+++++|+++|++||.|. +.++. .+|+|||+|.+.++|.+|+..++ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 76653 36999999999999999999884 377887777
Q ss_pred EecC
Q 037126 155 SSGH 158 (192)
Q Consensus 155 ~~a~ 158 (192)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 7654
No 193
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.54 E-value=2.4e-14 Score=101.68 Aligned_cols=77 Identities=29% Similarity=0.532 Sum_probs=68.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeC--------CCceEEEEeCCHHHHHHHHHHhcCCeeC---CeEEE
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPV--------GKGCGFVQFANRKDAEVALQKLQGTAIG---KQTVR 153 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~--------~~g~afv~f~~~~~a~~a~~~l~g~~~~---g~~l~ 153 (192)
+.++|||+|||..+++++|+++|++||.|..+.++. ++|+|||+|.+.++|.+|+..|+|..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 467999999999999999999999999999998874 3589999999999999999999998775 67888
Q ss_pred EEecCCCC
Q 037126 154 LSSGHNPG 161 (192)
Q Consensus 154 v~~a~~~~ 161 (192)
+.++....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88886543
No 194
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=4.7e-15 Score=99.79 Aligned_cols=75 Identities=21% Similarity=0.271 Sum_probs=66.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCe----EEEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEI----LSVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i----~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
....+|||+|||+.+++++|+++|++||.| ..|.++. ++|+|||+|.+.++|.+|+.. ++..++|+.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 456899999999999999999999999875 5777764 369999999999999999996 999999999999
Q ss_pred EecCC
Q 037126 155 SSGHN 159 (192)
Q Consensus 155 ~~a~~ 159 (192)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98853
No 195
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.54 E-value=1.5e-14 Score=97.62 Aligned_cols=75 Identities=28% Similarity=0.430 Sum_probs=66.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeE--EEEEeC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEE
Q 037126 82 GESNNATIFVGALDSDVSDKDLREPFSHFGEIL--SVKIPV-----GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRL 154 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~--~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v 154 (192)
......+|||+|||+.+++++|+++|+.| .|. .|.++. ++|+|||+|.+.++|.+|+.. ++..++|+.|+|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 34567889999999999999999999999 576 888875 379999999999999999984 789999999999
Q ss_pred EecC
Q 037126 155 SSGH 158 (192)
Q Consensus 155 ~~a~ 158 (192)
.++.
T Consensus 116 ~~a~ 119 (126)
T 2hgm_A 116 FKSS 119 (126)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9885
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.50 E-value=1.3e-13 Score=90.17 Aligned_cols=75 Identities=24% Similarity=0.378 Sum_probs=65.6
Q ss_pred CCCceEEEcCC--CCCCC--------HHHHHHHhccCCCeEEEEEeC--------CCceEEEEeCCHHHHHHHHHHhcCC
Q 037126 84 SNNATIFVGAL--DSDVS--------DKDLREPFSHFGEILSVKIPV--------GKGCGFVQFANRKDAEVALQKLQGT 145 (192)
Q Consensus 84 ~~~~~l~v~~l--p~~~~--------~~~l~~~f~~~g~i~~~~~~~--------~~g~afv~f~~~~~a~~a~~~l~g~ 145 (192)
.++++|.+.|+ |.... +++|++.|++||.|.++.+++ ++|++||+|.+.++|.+|+..|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999998 33332 268999999999999999875 3699999999999999999999999
Q ss_pred eeCCeEEEEEecC
Q 037126 146 AIGKQTVRLSSGH 158 (192)
Q Consensus 146 ~~~g~~l~v~~a~ 158 (192)
.++|++|++.|+.
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999985
No 197
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.50 E-value=4.5e-14 Score=94.21 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=63.8
Q ss_pred ceEEEcCC----CCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCC----HHH----HHHHHH--HhcCCe
Q 037126 87 ATIFVGAL----DSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFAN----RKD----AEVALQ--KLQGTA 146 (192)
Q Consensus 87 ~~l~v~~l----p~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~----~~~----a~~a~~--~l~g~~ 146 (192)
..|||+|| |+.+++.+|+++|+.||.|.++.++.+ +|+|||+|.+ ++. |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 999999999999999999999998853 6999999996 433 788888 789999
Q ss_pred eCCeEEEEEecCC
Q 037126 147 IGKQTVRLSSGHN 159 (192)
Q Consensus 147 ~~g~~l~v~~a~~ 159 (192)
++|++|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998763
No 198
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.49 E-value=2.5e-13 Score=96.56 Aligned_cols=80 Identities=21% Similarity=0.360 Sum_probs=68.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEE-----EEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 81 DGESNNATIFVGALDSDVSDKDLREPFSHFGEILS-----VKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~-----~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
....+.++|||+|||..+++++|+++|+.||.+.. ..--.++|+|||+|.+.++|.+|++ |+|..+.|++|+|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 34567899999999999999999999999875433 3334468999999999999999995 99999999999999
Q ss_pred ecCCCC
Q 037126 156 SGHNPG 161 (192)
Q Consensus 156 ~a~~~~ 161 (192)
++.+..
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 997653
No 199
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.48 E-value=1.5e-13 Score=107.40 Aligned_cols=78 Identities=19% Similarity=0.273 Sum_probs=69.9
Q ss_pred CCCCCCceEEEcC--CCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeC---Ce--EEE
Q 037126 81 DGESNNATIFVGA--LDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIG---KQ--TVR 153 (192)
Q Consensus 81 ~~~~~~~~l~v~~--lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~---g~--~l~ 153 (192)
....+++.|||+| |+..+++++|+++|++||.|..+.+.++||+|||+|.+.++|.+|++.|||..+. |+ +|.
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 3357789999998 5789999999999999999999999999999999999999999999999999882 44 688
Q ss_pred EEecC
Q 037126 154 LSSGH 158 (192)
Q Consensus 154 v~~a~ 158 (192)
+.|+.
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 88884
No 200
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.48 E-value=4.2e-14 Score=94.16 Aligned_cols=77 Identities=22% Similarity=0.432 Sum_probs=43.8
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGS 80 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (192)
+|++|+ +.++|||||+|.+.++|++|++.|+|..+.|++|.|.++.++....... .
T Consensus 36 ~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~----------------------~ 91 (115)
T 4f25_A 36 KVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL----------------------G 91 (115)
T ss_dssp EEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC----------------------------
T ss_pred EEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcccccccc----------------------c
Confidence 356774 5689999999999999999999999999999999999987653321100 1
Q ss_pred CCCCCCceEEEcCCCCCCCHH
Q 037126 81 DGESNNATIFVGALDSDVSDK 101 (192)
Q Consensus 81 ~~~~~~~~l~v~~lp~~~~~~ 101 (192)
........|||+|||+.+|++
T Consensus 92 ~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 92 ARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp ---------------------
T ss_pred cccCCCCceEeCCCCCCcccc
Confidence 122344569999999999875
No 201
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.45 E-value=3.6e-13 Score=94.93 Aligned_cols=73 Identities=21% Similarity=0.493 Sum_probs=66.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC------CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG------KGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
+.++|||+|||..+++++|+++|+.||.|..+.++.+ +|+|||+|.+.++|.+|+.. +..++|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 4689999999999999999999999999999998863 58999999999999999984 678999999999886
Q ss_pred C
Q 037126 159 N 159 (192)
Q Consensus 159 ~ 159 (192)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.43 E-value=8.3e-13 Score=88.08 Aligned_cols=75 Identities=19% Similarity=0.239 Sum_probs=65.2
Q ss_pred CCCceEEEcCCCC--CC---CHHHHHHHhccCCCeEEEEEeCC----------CceEEEEeCCHHHHHHHHHHhcCCeeC
Q 037126 84 SNNATIFVGALDS--DV---SDKDLREPFSHFGEILSVKIPVG----------KGCGFVQFANRKDAEVALQKLQGTAIG 148 (192)
Q Consensus 84 ~~~~~l~v~~lp~--~~---~~~~l~~~f~~~g~i~~~~~~~~----------~g~afv~f~~~~~a~~a~~~l~g~~~~ 148 (192)
.++++|++.|+-. .+ -+++|++.|++||.|.++.++.+ +|++||+|.+.++|.+|+..|||+.++
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3678999999843 22 35889999999999999988753 378999999999999999999999999
Q ss_pred CeEEEEEecC
Q 037126 149 KQTVRLSSGH 158 (192)
Q Consensus 149 g~~l~v~~a~ 158 (192)
|+.|++.|+.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999985
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=9e-13 Score=85.29 Aligned_cols=66 Identities=24% Similarity=0.349 Sum_probs=57.8
Q ss_pred CCCCHHHHHHHhccCCCeEEEEEe-CCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCCCCCC
Q 037126 96 SDVSDKDLREPFSHFGEILSVKIP-VGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHNPGNK 163 (192)
Q Consensus 96 ~~~~~~~l~~~f~~~g~i~~~~~~-~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 163 (192)
..+++++|+++|++||.|..+.++ ..+|+|||+|.+.++|..|+..+++ +.|++|+|.|++.+...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 458999999999999999999987 4689999999999999999997544 67999999999866543
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.42 E-value=1.9e-12 Score=85.80 Aligned_cols=75 Identities=12% Similarity=0.175 Sum_probs=65.2
Q ss_pred CCCceEEEcCCCCCCC----------HHHHHHHhccCCCeEEEEEeCC--CceEEEEeCCHHHHHHHHHHhcCCeeCCeE
Q 037126 84 SNNATIFVGALDSDVS----------DKDLREPFSHFGEILSVKIPVG--KGCGFVQFANRKDAEVALQKLQGTAIGKQT 151 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~----------~~~l~~~f~~~g~i~~~~~~~~--~g~afv~f~~~~~a~~a~~~l~g~~~~g~~ 151 (192)
.++++|.+.|+-..-. +++|++.|++||.|.++.+.++ +|++||+|.+.++|.+|+..|||+.++|+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 5678899999833221 2678999999999999998764 799999999999999999999999999999
Q ss_pred EEEEecC
Q 037126 152 VRLSSGH 158 (192)
Q Consensus 152 l~v~~a~ 158 (192)
|.+.|+.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9999985
No 205
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.40 E-value=1.4e-13 Score=89.91 Aligned_cols=67 Identities=25% Similarity=0.406 Sum_probs=57.7
Q ss_pred EcCCCCCCCHHHHHHHh------------ccCCCeEEEEEeCC-----CceEEEEeCCHHHHHHHHHHhcCCeeCCeEEE
Q 037126 91 VGALDSDVSDKDLREPF------------SHFGEILSVKIPVG-----KGCGFVQFANRKDAEVALQKLQGTAIGKQTVR 153 (192)
Q Consensus 91 v~~lp~~~~~~~l~~~f------------~~~g~i~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~ 153 (192)
+.||+..+++++|++.| ++||.|.++.+.++ +|+|||+|.+.++|.+|+..|||+.++|++|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45566666776666555 99999999999863 79999999999999999999999999999999
Q ss_pred EEec
Q 037126 154 LSSG 157 (192)
Q Consensus 154 v~~a 157 (192)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 206
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.40 E-value=5e-13 Score=85.20 Aligned_cols=51 Identities=18% Similarity=0.422 Sum_probs=46.0
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhc-CceeCCceeEEeecCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMN-GVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~-~~~~~g~~i~v~~~~~~~ 51 (192)
+|++|+.||.++|||||+|.+.++|++|++.++ +..+.|++|+|+++.++.
T Consensus 33 ~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~ 84 (91)
T 2lxi_A 33 RLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKP 84 (91)
T ss_dssp CSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCC
T ss_pred EEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCC
Confidence 578999999999999999999999999998874 567999999999987664
No 207
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.40 E-value=3.7e-13 Score=87.15 Aligned_cols=49 Identities=31% Similarity=0.579 Sum_probs=46.0
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP 49 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~ 49 (192)
+|++|+.+|.++|||||+|.+.++|++|++.|||..+.|++|+|.+++|
T Consensus 50 ~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 50 KLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp EEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred EeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 4678999999999999999999999999999999999999999999864
No 208
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.37 E-value=5.1e-13 Score=85.80 Aligned_cols=49 Identities=18% Similarity=0.460 Sum_probs=45.1
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCc----eeCCceeEEeecCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGV----YCSSRPMSIDVATP 49 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~----~~~g~~i~v~~~~~ 49 (192)
||++|+.||++||||||+|.+.++|++|++.|||. .+.||+|.|++++.
T Consensus 42 ~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 42 RLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp ECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred EEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 47889999999999999999999999999999997 48999999999863
No 209
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.32 E-value=2.2e-12 Score=85.08 Aligned_cols=50 Identities=8% Similarity=0.144 Sum_probs=46.8
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
+|++|+.||+++|||||+|.+.++|++|++.|||..+.|+.|+|.++...
T Consensus 37 ~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 37 EILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred EEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 46889999999999999999999999999999999999999999998654
No 210
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.32 E-value=7.2e-13 Score=84.22 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=43.8
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
+|++|+.+|+++|||||+|.+.++|++|++.|||..+.|+.|+|.++.++.
T Consensus 34 ~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~ 84 (90)
T 3p5t_L 34 KFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLE 84 (90)
T ss_dssp EEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC----
T ss_pred EEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCc
Confidence 367888899999999999999999999999999999999999999987653
No 211
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.28 E-value=7.4e-12 Score=78.09 Aligned_cols=49 Identities=35% Similarity=0.598 Sum_probs=46.0
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
+++|+.+|.++|||||+|.+.++|++|++.|||..+.|++|+|.++.++
T Consensus 33 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 33 VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred EEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 5678889999999999999999999999999999999999999998765
No 212
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=4.2e-11 Score=79.59 Aligned_cols=78 Identities=21% Similarity=0.171 Sum_probs=70.0
Q ss_pred CCCCCCCceEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCC-HHHHHHHHHHh--cCCeeCCeEEEEE
Q 037126 80 SDGESNNATIFVGALDSD-VSDKDLREPFSHFGEILSVKIPVGKGCGFVQFAN-RKDAEVALQKL--QGTAIGKQTVRLS 155 (192)
Q Consensus 80 ~~~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~-~~~a~~a~~~l--~g~~~~g~~l~v~ 155 (192)
.......+.|||+||+.. +++++|+++|++||.|..|.+..+...|||.|.+ ..+|..|+..+ .+..+.|..+.++
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 344577899999999999 9999999999999999999999999999999999 89999999999 4778888888776
Q ss_pred ec
Q 037126 156 SG 157 (192)
Q Consensus 156 ~a 157 (192)
..
T Consensus 92 vL 93 (121)
T 1owx_A 92 VL 93 (121)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 213
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=5.8e-11 Score=74.29 Aligned_cols=74 Identities=24% Similarity=0.407 Sum_probs=62.1
Q ss_pred CCCceEEEcCCCC----CCCH----HHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEE
Q 037126 84 SNNATIFVGALDS----DVSD----KDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 155 (192)
Q Consensus 84 ~~~~~l~v~~lp~----~~~~----~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 155 (192)
++..+++|.-.+. .+.. .+|.+.|++||.|..++++.++ +||+|.+.+.|.+|+. |+|..++|+.|+|.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 4556777766552 2333 6788999999999999999976 8999999999999999 99999999999999
Q ss_pred ecCCC
Q 037126 156 SGHNP 160 (192)
Q Consensus 156 ~a~~~ 160 (192)
++++.
T Consensus 82 lkt~d 86 (91)
T 2dnr_A 82 LKSPS 86 (91)
T ss_dssp ECCCS
T ss_pred eCCCC
Confidence 99754
No 214
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.24 E-value=7e-12 Score=81.22 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=45.8
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCC-ceeEEeecCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSS-RPMSIDVATP 49 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g-~~i~v~~~~~ 49 (192)
+|++|+.||+++|||||+|.+.++|++|++.|||..+.| +.|+|.++.+
T Consensus 43 ~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 43 EFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp ECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred EEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence 478899899999999999999999999999999999999 9999999854
No 215
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.24 E-value=1.2e-11 Score=77.89 Aligned_cols=49 Identities=35% Similarity=0.570 Sum_probs=44.5
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
+++|+.+|.++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.++
T Consensus 38 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 38 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 5678789999999999999999999999999999999999999998754
No 216
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=1.5e-11 Score=79.85 Aligned_cols=52 Identities=29% Similarity=0.517 Sum_probs=47.6
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
++++|+.++.++|||||+|.+.++|++|++.|++..+.|+.|+|.++.++..
T Consensus 43 ~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 43 RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 94 (102)
T ss_dssp EEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCS
T ss_pred EEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCC
Confidence 3677888999999999999999999999999999999999999999987644
No 217
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.24 E-value=2e-11 Score=78.35 Aligned_cols=53 Identities=30% Similarity=0.508 Sum_probs=48.4
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCcc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~ 53 (192)
+|++|+.+|.++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.++...
T Consensus 33 ~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 85 (96)
T 2x1f_A 33 KMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDIS 85 (96)
T ss_dssp ECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSGG
T ss_pred EEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCCC
Confidence 36788889999999999999999999999999999999999999999877544
No 218
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=1.5e-11 Score=78.89 Aligned_cols=52 Identities=33% Similarity=0.632 Sum_probs=47.3
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
+|++|+.+|.++|||||+|.+.++|++|++.|||..+.|++|+|.++.++..
T Consensus 37 ~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 88 (96)
T 1x5t_A 37 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS 88 (96)
T ss_dssp EECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCC
T ss_pred EEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCC
Confidence 3677878999999999999999999999999999999999999999876643
No 219
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.21 E-value=2.7e-11 Score=78.15 Aligned_cols=52 Identities=31% Similarity=0.381 Sum_probs=47.5
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
+|++|+.+|.++|||||+|.+.++|++|++.|||..+.|++|+|.++.++..
T Consensus 39 ~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 39 HYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp ECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCST
T ss_pred EEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcc
Confidence 3677888999999999999999999999999999999999999999987644
No 220
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=2.7e-11 Score=80.07 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=47.5
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
+|++|+.+|.++|||||+|.+.++|++|++.|||..+.|+.|+|.++..+..
T Consensus 54 ~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 54 HIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp ECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCC
T ss_pred EEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCC
Confidence 3677888999999999999999999999999999999999999999877644
No 221
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.21 E-value=1.6e-11 Score=79.24 Aligned_cols=46 Identities=26% Similarity=0.358 Sum_probs=43.6
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeec
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVA 47 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 47 (192)
|++|+.+|+++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 53 i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 53 LYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp EEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred EEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 6778889999999999999999999999999999999999999986
No 222
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=2.2e-11 Score=79.01 Aligned_cols=53 Identities=23% Similarity=0.467 Sum_probs=47.9
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCcc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~ 53 (192)
+|++|+.++.++|||||+|.+.++|++|++.|++..+.|++|+|.++.++...
T Consensus 43 ~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2cqb_A 43 QIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIK 95 (102)
T ss_dssp ECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred EEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCC
Confidence 36778889999999999999999999999999999999999999999876443
No 223
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2.5e-11 Score=77.70 Aligned_cols=52 Identities=37% Similarity=0.650 Sum_probs=47.2
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
+|++|+.++.++|||||+|.+.++|++|++.|||..+.|++|+|.++.++..
T Consensus 36 ~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 36 VLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD 87 (95)
T ss_dssp EEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCC
T ss_pred EEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccC
Confidence 3577888899999999999999999999999999999999999999976643
No 224
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.20 E-value=3.2e-11 Score=77.67 Aligned_cols=50 Identities=18% Similarity=0.267 Sum_probs=45.8
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
++++++.+|+++|||||+|.+.++|++|++.|||..+.|++|+|+++..+
T Consensus 46 ~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 46 VCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp CEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred EEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 35678889999999999999999999999999999999999999998654
No 225
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.20 E-value=2.1e-11 Score=76.33 Aligned_cols=47 Identities=23% Similarity=0.458 Sum_probs=43.9
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 48 (192)
+++|+.+|.++|||||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus 39 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 39 IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 56788899999999999999999999999999999999999999863
No 226
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=3.3e-11 Score=78.35 Aligned_cols=51 Identities=22% Similarity=0.458 Sum_probs=46.9
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
|++|+.+|.++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.++..
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 47 LAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 97 (103)
T ss_dssp EEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred EeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCC
Confidence 567888999999999999999999999999999999999999999876643
No 227
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.19 E-value=3.5e-11 Score=79.76 Aligned_cols=53 Identities=32% Similarity=0.549 Sum_probs=47.8
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCcc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~ 53 (192)
+|++|+.+|.++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.++...
T Consensus 46 ~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 46 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCC
T ss_pred EEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCC
Confidence 36778789999999999999999999999999999999999999999776443
No 228
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=4.2e-11 Score=77.37 Aligned_cols=49 Identities=16% Similarity=0.484 Sum_probs=45.4
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
|+.|+ +|.++|||||+|.+.++|++|++.|+|..+.|++|+|.++.++.
T Consensus 49 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 49 LVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGP 97 (100)
T ss_dssp EEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCS
T ss_pred EEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 56777 89999999999999999999999999999999999999987664
No 229
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.18 E-value=3.5e-11 Score=79.80 Aligned_cols=52 Identities=27% Similarity=0.490 Sum_probs=47.4
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
+|++|+.+|.++|||||+|.+.++|++|++.||+..+.|+.|+|.++.++..
T Consensus 56 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 56 KVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND 107 (115)
T ss_dssp EEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCC
T ss_pred EEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCc
Confidence 3677888999999999999999999999999999999999999999876643
No 230
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=3.3e-11 Score=78.55 Aligned_cols=52 Identities=25% Similarity=0.436 Sum_probs=47.3
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
+|++|+.++.++|||||+|.+.++|++|++.|++..+.|++|+|.++.++..
T Consensus 46 ~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 46 HMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNK 97 (105)
T ss_dssp ECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSC
T ss_pred EEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCc
Confidence 3677888999999999999999999999999999999999999999876643
No 231
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.17 E-value=2.9e-11 Score=84.64 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=46.6
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
+|++|+.+|+++|||||+|.+.++|++|++.|||..+.|+.|.|.++.++
T Consensus 88 ~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 88 KFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp EEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred EEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 46789999999999999999999999999999999999999999998654
No 232
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.17 E-value=2.4e-11 Score=79.84 Aligned_cols=50 Identities=36% Similarity=0.726 Sum_probs=46.1
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
+|++++.+|.++|||||+|.+.++|++|++.|+|..+.|++|+|.++.++
T Consensus 57 ~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 57 QLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp EEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSS
T ss_pred EEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccC
Confidence 35678889999999999999999999999999999999999999998765
No 233
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.17 E-value=3.9e-11 Score=76.73 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=44.5
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 48 (192)
++++|+.+|+++|||||+|.+.++|++|++.||+..+.|++|+|+++.
T Consensus 46 ~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 46 VCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp CEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred EEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 356778899999999999999999999999999999999999999875
No 234
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=3.8e-11 Score=76.77 Aligned_cols=48 Identities=21% Similarity=0.477 Sum_probs=44.8
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP 49 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~ 49 (192)
|++|+.+|.++|||||+|.+.++|++|++.|||..+.|++|+|.++..
T Consensus 47 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 47 IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp EEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred EEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 567888899999999999999999999999999999999999999764
No 235
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=3.9e-11 Score=76.17 Aligned_cols=48 Identities=23% Similarity=0.375 Sum_probs=44.0
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
|++| .+|+++|||||+|.+.++|++|++ +|+..+.|++|.|.++.++.
T Consensus 41 i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 41 IVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp EEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSCC
T ss_pred EEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcCC
Confidence 5677 689999999999999999999998 99999999999999987653
No 236
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.17 E-value=3.7e-11 Score=78.13 Aligned_cols=51 Identities=25% Similarity=0.579 Sum_probs=46.5
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
+|++|+.+|+++|||||+|.+.++|++|+ .|++..+.|++|+|.++.++..
T Consensus 45 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 45 RLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRKQ 95 (103)
T ss_dssp EEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCCC
T ss_pred EEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCCC
Confidence 36788889999999999999999999999 9999999999999999876643
No 237
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=4.7e-11 Score=77.03 Aligned_cols=51 Identities=25% Similarity=0.500 Sum_probs=46.3
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
+|++|+.+|.++|||||+|.+.++|++|++ +++..+.|++|+|.++.++..
T Consensus 41 ~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~~ 91 (99)
T 2dgs_A 41 VMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDS 91 (99)
T ss_dssp EECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCCC
T ss_pred EEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCcc
Confidence 367788899999999999999999999997 999999999999999987643
No 238
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=2.8e-11 Score=79.03 Aligned_cols=49 Identities=29% Similarity=0.417 Sum_probs=45.6
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
|++|+.+|.++|||||+|.+.++|++|++.|+|..+.|+.|.|.++.++
T Consensus 55 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 103 (106)
T 1p27_B 55 LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR 103 (106)
T ss_dssp EEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred EEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCC
Confidence 5678889999999999999999999999999999999999999998654
No 239
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=3.3e-11 Score=78.35 Aligned_cols=51 Identities=25% Similarity=0.460 Sum_probs=46.8
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
+|++|+.+|.++|||||+|.+.++|++|++.|||..+.|+.|.|.++....
T Consensus 44 ~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 44 YIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGR 94 (103)
T ss_dssp ECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCC
T ss_pred EEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCC
Confidence 367788889999999999999999999999999999999999999987654
No 240
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.16 E-value=2.1e-11 Score=78.99 Aligned_cols=41 Identities=20% Similarity=0.425 Sum_probs=38.7
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.++.
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 79999999999999999999999999999999999987664
No 241
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=2e-11 Score=79.45 Aligned_cols=52 Identities=33% Similarity=0.586 Sum_probs=47.4
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCcc
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~ 53 (192)
|++++.+|.++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.++...
T Consensus 40 i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 91 (104)
T 1p1t_A 40 LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK 91 (104)
T ss_dssp EEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTHH
T ss_pred EEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCccch
Confidence 5678789999999999999999999999999999999999999999876543
No 242
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=4.3e-11 Score=76.38 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=43.9
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 48 (192)
|++|+.+|.++|||||+|.+.++|++|++.||+..+.|++|+|++++
T Consensus 48 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 48 IMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp ECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred EEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 57788889999999999999999999999999999999999999863
No 243
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.15 E-value=6.3e-11 Score=77.97 Aligned_cols=53 Identities=19% Similarity=0.512 Sum_probs=48.0
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhc------CceeCCceeEEeecCCCCcc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMN------GVYCSSRPMSIDVATPKKAS 53 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~------~~~~~g~~i~v~~~~~~~~~ 53 (192)
+|++|+.+|.++|||||+|.+.++|++|++.++ +..+.|++|+|.++.++...
T Consensus 46 ~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 46 RVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp ECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCC
T ss_pred EEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCccC
Confidence 367888899999999999999999999999999 99999999999999876443
No 244
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=3.5e-11 Score=78.00 Aligned_cols=51 Identities=33% Similarity=0.614 Sum_probs=46.6
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
+|++|+.++.++|||||+|.+.++|++|++.||+..+.|++|+|.++.++.
T Consensus 43 ~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 43 VVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSS 93 (102)
T ss_dssp EECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCC
T ss_pred EEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 367788899999999999999999999999999999999999999987654
No 245
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.15 E-value=5.2e-11 Score=78.30 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=45.6
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
|++|+.+|.++|||||+|.+.++|++|++.|+|..+.|++|.|.++.++
T Consensus 58 i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 106 (110)
T 1oo0_B 58 LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 106 (110)
T ss_dssp CCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEES
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccC
Confidence 5678889999999999999999999999999999999999999998654
No 246
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.15 E-value=2.4e-11 Score=78.69 Aligned_cols=50 Identities=14% Similarity=0.411 Sum_probs=45.6
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
++++|+.+|.++|||||+|.+.++|++|++ |+|..+.|+.|+|.++.++.
T Consensus 47 ~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~ 96 (101)
T 1fj7_A 47 LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRD 96 (101)
T ss_dssp CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCC
T ss_pred EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCC
Confidence 367788889999999999999999999998 99999999999999987653
No 247
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=4.8e-11 Score=76.94 Aligned_cols=50 Identities=26% Similarity=0.388 Sum_probs=46.1
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCce----eEEeecCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRP----MSIDVATPK 50 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~----i~v~~~~~~ 50 (192)
+|++|+.+|.++|||||+|.+.++|++|++.|||..+.|+. |+|.++.+.
T Consensus 41 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 41 KIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp EEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred EEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence 36788889999999999999999999999999999999999 999998755
No 248
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.14 E-value=4.3e-11 Score=81.10 Aligned_cols=51 Identities=24% Similarity=0.528 Sum_probs=46.9
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
+|++|+.+|.++|||||+|.+.++|++|++.|+|..+.|++|.|.++.++.
T Consensus 77 ~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 77 SIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp EEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSS
T ss_pred EEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 367788899999999999999999999999999999999999999987654
No 249
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.14 E-value=6e-11 Score=74.90 Aligned_cols=48 Identities=13% Similarity=0.392 Sum_probs=44.7
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
+++|+.+|.++|||||+|.+.++|++|+ .++|..+.|+.|+|.++.++
T Consensus 38 i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 38 ILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp EEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 5678889999999999999999999999 99999999999999998754
No 250
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.13 E-value=9.4e-11 Score=76.50 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=46.9
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCcee---CCceeEEeecCCCCc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYC---SSRPMSIDVATPKKA 52 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~---~g~~i~v~~~~~~~~ 52 (192)
+|++|+.+|.++|||||+|.+.++|++|++.||+..+ .|++|.|.++.++..
T Consensus 44 ~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 44 TVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR 98 (106)
T ss_dssp ECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSC
T ss_pred EEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCcccc
Confidence 3678888999999999999999999999999999987 899999999976643
No 251
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.13 E-value=6.9e-11 Score=82.71 Aligned_cols=52 Identities=27% Similarity=0.486 Sum_probs=47.6
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
+|++|+.+|.++|||||+|.+.++|++|++.|||..+.|++|+|.++.++..
T Consensus 101 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 101 YIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp ECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred EEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 4678888999999999999999999999999999999999999999986643
No 252
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=9.1e-11 Score=76.38 Aligned_cols=51 Identities=22% Similarity=0.450 Sum_probs=46.2
Q ss_pred CccccCCC-CCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 1 KVIIDSNT-DRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 1 kv~~d~~t-g~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
+|++|+.+ |.++|||||+|.+.++|++|+ .|++..+.|+.|.|.++.++..
T Consensus 45 ~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 45 RLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQD 96 (104)
T ss_dssp ECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCCC
T ss_pred EEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCCC
Confidence 36778877 999999999999999999999 9999999999999999977643
No 253
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.13 E-value=5e-11 Score=72.84 Aligned_cols=46 Identities=22% Similarity=0.388 Sum_probs=42.1
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeec
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVA 47 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 47 (192)
++++|+.+|.++|||||+|.+.++|++|++ +++..+.|++|.|.++
T Consensus 30 ~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 30 MLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred EEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 467788899999999999999999999996 9999999999999874
No 254
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.12 E-value=2.5e-11 Score=82.50 Aligned_cols=51 Identities=18% Similarity=0.416 Sum_probs=47.0
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCc----eeCCceeEEeecCCCCc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGV----YCSSRPMSIDVATPKKA 52 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~----~~~g~~i~v~~~~~~~~ 52 (192)
+|++|+.||+++|||||+|.+. +|.+|+..|||. .+.|+.|.|.++.+...
T Consensus 56 ~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 56 RVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp ECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCC
T ss_pred EEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCC
Confidence 4788999999999999999999 999999999999 99999999999876543
No 255
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.12 E-value=5.8e-11 Score=76.82 Aligned_cols=48 Identities=27% Similarity=0.482 Sum_probs=44.1
Q ss_pred ccccC-CCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 2 VIIDS-NTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 2 v~~d~-~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
|++|+ .+|+++|||||+|.+.++|++|+ .|+|..+.|+.|+|+++.++
T Consensus 50 i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 50 LPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp CSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCS
T ss_pred EEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCC
Confidence 56776 58999999999999999999999 99999999999999998765
No 256
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.12 E-value=1.2e-10 Score=76.11 Aligned_cols=51 Identities=18% Similarity=0.350 Sum_probs=46.1
Q ss_pred cccc-CCCCCcceEEEEEecCHHHHHHHHHHh-cCceeCCceeEEeecCCCCc
Q 037126 2 VIID-SNTDRTKGYGFVRFGDENERSRAMIEM-NGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 2 v~~d-~~tg~s~g~afV~f~~~~~A~~A~~~l-~~~~~~g~~i~v~~~~~~~~ 52 (192)
|+++ +.+|.++|||||+|.+.++|++|++.| |+..+.|++|+|.++.++..
T Consensus 47 i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 47 LPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVT 99 (107)
T ss_dssp CCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCC
T ss_pred EecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCC
Confidence 5666 678999999999999999999999999 99999999999999987643
No 257
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=1.4e-10 Score=74.97 Aligned_cols=49 Identities=20% Similarity=0.440 Sum_probs=44.6
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
++++ .+|.++|||||+|.+.++|++|++.|++..+.|+.|+|.++.++.
T Consensus 44 ~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 44 VPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 92 (101)
T ss_dssp CCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCC
T ss_pred EEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCC
Confidence 5566 589999999999999999999999999999999999999987663
No 258
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.11 E-value=8.7e-11 Score=76.56 Aligned_cols=45 Identities=22% Similarity=0.479 Sum_probs=41.1
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeec
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVA 47 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 47 (192)
|++|+ +++++|||||+|.+.++|.+|++.|||..+.||+|+|.++
T Consensus 59 i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 59 VCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp ECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred EEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 55665 5799999999999999999999999999999999999885
No 259
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.11 E-value=9e-11 Score=80.40 Aligned_cols=52 Identities=25% Similarity=0.568 Sum_probs=47.3
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
+|++|+.+|.++|||||+|.+.++|++|++.|||..+.|+.|+|.++.++..
T Consensus 73 ~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 124 (139)
T 1u6f_A 73 KIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQ 124 (139)
T ss_dssp EEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCC
T ss_pred EEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 3678888999999999999999999999999999999999999999876643
No 260
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.11 E-value=9.3e-11 Score=77.97 Aligned_cols=49 Identities=22% Similarity=0.502 Sum_probs=45.3
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
|++|+ +|.++|||||+|.+.++|++|++.|+|..+.|+.|.|.++.++.
T Consensus 39 i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 39 LIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPS 87 (116)
T ss_dssp EECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSS
T ss_pred EEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 56777 89999999999999999999999999999999999999987654
No 261
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.11 E-value=1.2e-10 Score=76.09 Aligned_cols=47 Identities=17% Similarity=0.255 Sum_probs=42.3
Q ss_pred ccccCCC-CCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecC
Q 037126 2 VIIDSNT-DRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48 (192)
Q Consensus 2 v~~d~~t-g~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 48 (192)
|++|+.+ ++++|||||+|.+.++|.+|++.|||..+.||.|.|.++.
T Consensus 45 i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~ 92 (105)
T 2pe8_A 45 IFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYN 92 (105)
T ss_dssp EEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 5566543 6899999999999999999999999999999999999975
No 262
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.11 E-value=8.1e-11 Score=74.08 Aligned_cols=49 Identities=18% Similarity=0.414 Sum_probs=43.7
Q ss_pred ccccCCCCC-cceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 2 VIIDSNTDR-TKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 2 v~~d~~tg~-s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
|++|+.++. ++|||||+|.+.++|++|++.|||..+.|+.|+|.++.++
T Consensus 36 i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 36 MPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp CCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCC
T ss_pred EEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCC
Confidence 456666665 9999999999999999999999999999999999998755
No 263
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=6.2e-11 Score=77.11 Aligned_cols=51 Identities=47% Similarity=0.812 Sum_probs=46.2
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCce-eCCceeEEeecCCCCc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVY-CSSRPMSIDVATPKKA 52 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~-~~g~~i~v~~~~~~~~ 52 (192)
+|++|+ +|.++|||||+|.+.++|++|++.|++.. +.|++|.|.++.++..
T Consensus 41 ~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~ 92 (104)
T 2dhg_A 41 KVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 92 (104)
T ss_dssp EEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCS
T ss_pred EEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCc
Confidence 367787 99999999999999999999999999999 9999999999876643
No 264
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.09 E-value=5.4e-11 Score=75.33 Aligned_cols=50 Identities=34% Similarity=0.610 Sum_probs=43.3
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
+|++|+.+|.++|||||+|.+.+ |++|+..|||..+.|++|+|+++.+..
T Consensus 32 ~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 32 KLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKK 81 (90)
T ss_dssp EECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred EEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 36778888999999999999999 999999999999999999999987653
No 265
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.09 E-value=1.3e-10 Score=75.89 Aligned_cols=46 Identities=35% Similarity=0.493 Sum_probs=43.2
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 48 (192)
|++|+ +|.++|||||+|.+.++|++|++.|+|..+.|++|+|.++.
T Consensus 61 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 61 VHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp EEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 56787 99999999999999999999999999999999999999874
No 266
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.09 E-value=7.4e-11 Score=78.55 Aligned_cols=47 Identities=30% Similarity=0.562 Sum_probs=43.9
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeec
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVA 47 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 47 (192)
+|++|+.+|.++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 71 ~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 71 KVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp EECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred EEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 36778889999999999999999999999999999999999999986
No 267
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.09 E-value=1.5e-10 Score=75.42 Aligned_cols=50 Identities=22% Similarity=0.408 Sum_probs=45.2
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCC---ceeEEeecCCCCc
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSS---RPMSIDVATPKKA 52 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g---~~i~v~~~~~~~~ 52 (192)
|++|+ +|.++|||||+|.+.++|++|++.|||..+.| ++|+|.++..+..
T Consensus 47 i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 47 VLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 99 (105)
T ss_dssp EEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCC
T ss_pred EEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcc
Confidence 56776 89999999999999999999999999999988 9999999976643
No 268
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.08 E-value=9.4e-11 Score=75.42 Aligned_cols=51 Identities=14% Similarity=0.365 Sum_probs=44.4
Q ss_pred ccccCC---CCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 2 VIIDSN---TDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 2 v~~d~~---tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
|++|+. |+.++|||||+|.+.++|++|++.|+|..+.|++|.|.++.++..
T Consensus 37 i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 37 ISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATK 90 (98)
T ss_dssp EEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSC
T ss_pred EEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCC
Confidence 445554 669999999999999999999999999999999999999876643
No 269
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.07 E-value=2.4e-10 Score=75.28 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=43.3
Q ss_pred ccccCCCC---CcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 2 VIIDSNTD---RTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 2 v~~d~~tg---~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
|++|+.++ .++|||||+|.+.++|++|++.|||..+.|++|+|.++.++.
T Consensus 50 i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 50 INNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp EECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred EecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 45565544 566999999999999999999999999999999999998764
No 270
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.07 E-value=1.8e-10 Score=71.96 Aligned_cols=39 Identities=10% Similarity=0.304 Sum_probs=37.1
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecC
Q 037126 10 RTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48 (192)
Q Consensus 10 ~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 48 (192)
.++|||||+|.++++|++|++.||+..+.|++|+|..+.
T Consensus 41 ~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 41 LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 489999999999999999999999999999999999883
No 271
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.07 E-value=1.3e-10 Score=78.31 Aligned_cols=51 Identities=27% Similarity=0.396 Sum_probs=46.6
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
|++|+.+|.++|||||+|.+.++|++|++.|||..+.|+.|.|.++.++..
T Consensus 54 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 104 (126)
T 3ex7_B 54 LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP 104 (126)
T ss_dssp CCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSS
T ss_pred EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCC
Confidence 677888999999999999999999999999999999999999999865543
No 272
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=2.1e-10 Score=74.51 Aligned_cols=49 Identities=35% Similarity=0.713 Sum_probs=44.2
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
|++| +|.++|||||+|.+.++|++|++.|||..+.|++|.|.++.++..
T Consensus 47 i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 47 VMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 95 (103)
T ss_dssp EEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCC
T ss_pred EEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccccc
Confidence 4555 789999999999999999999999999999999999999977643
No 273
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.06 E-value=1.5e-09 Score=69.55 Aligned_cols=74 Identities=16% Similarity=0.127 Sum_probs=68.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccC-----CCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEec
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHF-----GEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSG 157 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~-----g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 157 (192)
...++|-+-+||..+++..|+.++.++ |.+..+.+.++.+.|+|+|.+...|.+|.-.|+|.+|+|++|++.-.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 346788899999999999999999999 99999999999999999999999999999999999999999998754
No 274
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=7.2e-10 Score=69.64 Aligned_cols=74 Identities=23% Similarity=0.369 Sum_probs=62.8
Q ss_pred CCCCCceEEEcCCCCC-----CCH----HHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEE
Q 037126 82 GESNNATIFVGALDSD-----VSD----KDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTV 152 (192)
Q Consensus 82 ~~~~~~~l~v~~lp~~-----~~~----~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l 152 (192)
..++..+++|.-++.. +.. .+|.+.|+.||.|..+++..++ +||+|.+.+.|.+|+. |+|..++|+.|
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 3466778888877642 222 5688999999999999999976 9999999999999999 99999999999
Q ss_pred EEEecC
Q 037126 153 RLSSGH 158 (192)
Q Consensus 153 ~v~~a~ 158 (192)
+|.+..
T Consensus 88 ~V~~k~ 93 (95)
T 1ufw_A 88 KISGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEeccC
Confidence 999865
No 275
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.05 E-value=2.3e-10 Score=76.81 Aligned_cols=49 Identities=29% Similarity=0.409 Sum_probs=45.1
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
|++|+ +|.++|||||+|.+.++|++|++.|+|..+.|++|+|+++....
T Consensus 67 i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 115 (124)
T 2kt5_A 67 VDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 115 (124)
T ss_dssp EECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTT
T ss_pred EEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 56777 89999999999999999999999999999999999999987653
No 276
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=1.2e-10 Score=75.63 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=43.5
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
+|++|+ +|+++|||||+|.+.++|++|| .+|+..+.|+.|.|.++...
T Consensus 45 ~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~~~ 92 (102)
T 1wez_A 45 HIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNSTA 92 (102)
T ss_dssp EEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEECCC
T ss_pred EEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECCCC
Confidence 367887 8999999999999999999999 58999999999999987654
No 277
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=3.4e-10 Score=72.56 Aligned_cols=46 Identities=11% Similarity=0.102 Sum_probs=41.2
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
|++|+.+ +|||||+|.+.++|++|++.|||..+.|++|+|.++.+.
T Consensus 45 i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 45 LSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGA 90 (96)
T ss_dssp ECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCS
T ss_pred EEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5566644 899999999999999999999999999999999998755
No 278
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=5.5e-11 Score=74.47 Aligned_cols=47 Identities=23% Similarity=0.449 Sum_probs=43.3
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 48 (192)
|++|+.+|.++|||||+|.+.++|++|++.|||..+.|+.|++.++.
T Consensus 37 i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 37 AILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp EECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred EEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 57788899999999999999999999999999999999999888754
No 279
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=2.2e-10 Score=75.08 Aligned_cols=49 Identities=14% Similarity=0.311 Sum_probs=44.2
Q ss_pred ccCCCCCcceEEEEEecCHHHHHHHHHHhc--CceeCCceeEEeecCCCCc
Q 037126 4 IDSNTDRTKGYGFVRFGDENERSRAMIEMN--GVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 4 ~d~~tg~s~g~afV~f~~~~~A~~A~~~l~--~~~~~g~~i~v~~~~~~~~ 52 (192)
.|+.+|.++|||||+|.+.++|+.|++.|+ +..+.|+.|+|.++.++..
T Consensus 44 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 44 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 94 (109)
T ss_dssp SSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCS
T ss_pred cCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCC
Confidence 678889999999999999999999999996 5899999999999976643
No 280
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.05 E-value=2.4e-10 Score=73.04 Aligned_cols=47 Identities=26% Similarity=0.476 Sum_probs=42.7
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP 49 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~ 49 (192)
|++|+ +|.++|||||+|.+.++|++|++.||+..+.|++|+|.++..
T Consensus 48 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 48 ICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp EEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred EEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 56676 499999999999999999999999999999999999998753
No 281
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.05 E-value=2.2e-10 Score=77.26 Aligned_cols=46 Identities=13% Similarity=0.306 Sum_probs=42.5
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 7 NTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 7 ~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
.+|.++|||||+|.+.++|+.|++.|||..+.|++|+|.++..+..
T Consensus 67 ~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 67 LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQS 112 (127)
T ss_dssp CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCH
T ss_pred cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcch
Confidence 4789999999999999999999999999999999999999976643
No 282
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.04 E-value=1.1e-10 Score=79.66 Aligned_cols=52 Identities=27% Similarity=0.486 Sum_probs=47.1
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
+|++|+.+|.++|||||+|.+.++|++|++.|+|..+.|++|+|.++.++..
T Consensus 78 ~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 78 YIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp ECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred EEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 3577888999999999999999999999999999999999999999976543
No 283
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.04 E-value=2.2e-10 Score=78.38 Aligned_cols=47 Identities=23% Similarity=0.468 Sum_probs=43.2
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeec
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVA 47 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 47 (192)
+|++|+.+|.++|||||+|.+.++|++|++.|+|..+.|++|+|.++
T Consensus 94 ~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 94 QIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp ECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred EEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 36788889999999999999999999999999999999999999874
No 284
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=1.8e-10 Score=75.02 Aligned_cols=51 Identities=24% Similarity=0.451 Sum_probs=46.1
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
+|++|+.+|.++|||||+|.+.++|++|++. ++..+.|+.|.|.++.++..
T Consensus 47 ~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 47 VIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRGM 97 (105)
T ss_dssp EEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSSC
T ss_pred EEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCCC
Confidence 3677888999999999999999999999988 99999999999999876643
No 285
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=4.4e-10 Score=74.26 Aligned_cols=48 Identities=25% Similarity=0.447 Sum_probs=43.9
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
|++|+ +|.++|||||+|.+.++|++|++.||+..+.|+.|.|.++...
T Consensus 47 i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 47 ILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp EEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred EEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence 56776 6999999999999999999999999999999999999998654
No 286
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.03 E-value=3.4e-10 Score=79.06 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=46.8
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
+|++|+.++.++|||||+|.+.++|++|++.|++..+.|+.|+|+++.+..
T Consensus 70 ~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 120 (156)
T 1h2v_Z 70 IMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK 120 (156)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCC
T ss_pred EEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 367788899999999999999999999999999999999999999997654
No 287
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=2.7e-10 Score=75.55 Aligned_cols=49 Identities=31% Similarity=0.489 Sum_probs=44.9
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
+|++|+.++.++|||||+|.+.++|++|++.+++ .+.|+.|+|.++...
T Consensus 48 ~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 48 VVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp EESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTT
T ss_pred EEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccC
Confidence 3678888999999999999999999999999998 899999999998654
No 288
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.02 E-value=3.4e-10 Score=75.97 Aligned_cols=48 Identities=19% Similarity=0.425 Sum_probs=44.5
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
|++|+.+|.++|||||+|.+.++|++|+ .|+|..+.|+.|+|.++...
T Consensus 68 i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 68 ILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp EEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCC
T ss_pred EEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCC
Confidence 5678789999999999999999999999 89999999999999998754
No 289
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.02 E-value=3.9e-10 Score=73.56 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=41.5
Q ss_pred ccccCCC--CCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecC
Q 037126 2 VIIDSNT--DRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48 (192)
Q Consensus 2 v~~d~~t--g~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 48 (192)
|++++.+ ++++|+|||+|.+.++|.+|++.|||..+.||.|+|.+..
T Consensus 47 i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 47 IPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp CCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 5566543 4689999999999999999999999999999999999875
No 290
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.02 E-value=3.5e-10 Score=74.28 Aligned_cols=50 Identities=28% Similarity=0.482 Sum_probs=44.5
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
+|++|+.+|.++|||||+|.+.++|++|++.+ +..+.|+.|.|.++.++.
T Consensus 56 ~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~~ 105 (109)
T 2rs2_A 56 LVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFPRR 105 (109)
T ss_dssp EECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCCCC
T ss_pred EEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccCCC
Confidence 36788889999999999999999999999775 588999999999987654
No 291
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=3.9e-10 Score=74.07 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=41.7
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 48 (192)
+|++|+ +|+++|||||+|.+.++|++|+ .+|+..+.|+.|.|..+.
T Consensus 46 ~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 46 HLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp EECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred EEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 367787 4999999999999999999999 799999999999998875
No 292
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=2.3e-10 Score=75.67 Aligned_cols=49 Identities=22% Similarity=0.442 Sum_probs=44.8
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
+|++|+.+|.++|||||+|.+.++|++|+ .|||..+.|+.|.|.++..+
T Consensus 56 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 56 RIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp EECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHHH
T ss_pred EEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCCC
Confidence 36788888999999999999999999999 99999999999999997543
No 293
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=2.2e-10 Score=75.90 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=43.6
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
+|++|+ +|+++|||||+|.+.++|++|++. |+..+.|++|.|.++..+
T Consensus 47 ~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 47 HVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp EECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHH
T ss_pred EEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHH
Confidence 367888 999999999999999999999966 999999999999998654
No 294
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.01 E-value=6.5e-11 Score=78.47 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=56.2
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCccchhhhcchhhhhccCCCCCCCCCCCCCCCCCCCc
Q 037126 8 TDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKASGYQQQCSSQALVLAGGPASNGTRVQGSDGESNNA 87 (192)
Q Consensus 8 tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (192)
++.++|||||+|.+.++|++|++.|||..+.|+.|.|.++.++...
T Consensus 43 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~---------------------------------- 88 (115)
T 3lqv_A 43 TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF---------------------------------- 88 (115)
T ss_dssp STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT----------------------------------
T ss_pred CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh----------------------------------
Confidence 4667999999999999999999999999999999999998643111
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCC
Q 037126 88 TIFVGALDSDVSDKDLREPFSHFGE 112 (192)
Q Consensus 88 ~l~v~~lp~~~~~~~l~~~f~~~g~ 112 (192)
.+++....+++|.++|++||.
T Consensus 89 ----~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 89 ----QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ----TTSCHHHHHHHHHHHHHHHCC
T ss_pred ----hhhhHhHhHHHHHHHHHHhCC
Confidence 356667788999999999874
No 295
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.01 E-value=1.7e-10 Score=70.77 Aligned_cols=45 Identities=29% Similarity=0.480 Sum_probs=41.7
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeec
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVA 47 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 47 (192)
+++|+.+|.++|||||+|.+.++|++|++.++ ..+.|++|.|.++
T Consensus 32 i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 32 VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp EECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred EecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 56788889999999999999999999999998 8999999999875
No 296
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=3.5e-10 Score=75.01 Aligned_cols=51 Identities=25% Similarity=0.399 Sum_probs=46.0
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
+|++|+.+|.++|||||+|.+.++|++|++. ++..+.|+.|+|.++.++..
T Consensus 58 ~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 58 VVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREE 108 (116)
T ss_dssp EEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCCC
T ss_pred EEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCcc
Confidence 3678888999999999999999999999977 99999999999999877643
No 297
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.57 E-value=3.4e-11 Score=80.04 Aligned_cols=52 Identities=25% Similarity=0.345 Sum_probs=47.0
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
+|++|+.+|.++|||||+|.+.++|++|++.|||..+.|++|+|.++.++..
T Consensus 46 ~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 46 NLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRAD 97 (116)
Confidence 3677878899999999999999999999999999999999999999876643
No 298
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.00 E-value=3.9e-10 Score=71.56 Aligned_cols=44 Identities=27% Similarity=0.457 Sum_probs=41.4
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 8 TDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 8 tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
+|.++|||||+|.+.++|++|++.|++..+.|+.|+|.++.+..
T Consensus 44 ~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 44 NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNAS 87 (92)
T ss_dssp SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCS
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 78999999999999999999999999999999999999987653
No 299
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=4.1e-10 Score=74.54 Aligned_cols=49 Identities=22% Similarity=0.321 Sum_probs=44.0
Q ss_pred ccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 4 IDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 4 ~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
.+..+|.++|||||+|.+.++|++|++.|+|..+.|++|+|.++.++..
T Consensus 59 ~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 107 (115)
T 2cpx_A 59 FRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQ 107 (115)
T ss_dssp EEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSC
T ss_pred EEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCC
Confidence 3444899999999999999999999999999999999999999987643
No 300
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.00 E-value=4.8e-10 Score=70.41 Aligned_cols=46 Identities=24% Similarity=0.481 Sum_probs=41.2
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeec
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVA 47 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 47 (192)
+|++|+.+|.++|||||+|.+.++|++|+ .+++..+.|+.|.|.++
T Consensus 42 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 42 TIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp EEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEEEC
T ss_pred EEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEEeC
Confidence 36778889999999999999999999999 45888899999999874
No 301
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.99 E-value=2.7e-10 Score=77.78 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=42.7
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP 49 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~ 49 (192)
+|++|+. |+++|||||+|.+.++|++|++ +|+..+.|++|.|.++..
T Consensus 78 ~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 78 HFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHR 124 (136)
T ss_dssp EEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCH
T ss_pred EEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECCh
Confidence 3577875 9999999999999999999998 999999999999999753
No 302
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.99 E-value=2.1e-10 Score=85.23 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=46.4
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
+|++|+.+|+++|||||+|.+.++|++||+.||+..|.|+.|+|.++...
T Consensus 101 ~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 101 KFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp EEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHH
T ss_pred EEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCC
Confidence 47889999999999999999999999999999999999999999998643
No 303
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=2.7e-10 Score=76.52 Aligned_cols=48 Identities=25% Similarity=0.382 Sum_probs=43.8
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
++.+..+|.++|||||+|.+.++|++||+ +|+..+.|+.|.|.++..+
T Consensus 57 ~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~ 104 (124)
T 1wel_A 57 YIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKK 104 (124)
T ss_dssp EEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHH
T ss_pred EEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHH
Confidence 45677799999999999999999999998 9999999999999998654
No 304
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.99 E-value=4.3e-10 Score=73.34 Aligned_cols=45 Identities=18% Similarity=0.339 Sum_probs=41.7
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCc-eeEEeecCCC
Q 037126 6 SNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSR-PMSIDVATPK 50 (192)
Q Consensus 6 ~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~-~i~v~~~~~~ 50 (192)
+.+|.++|||||+|.+.++|++|++.|||..+.|+ +|+|.++...
T Consensus 55 ~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 55 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 45899999999999999999999999999999999 9999998654
No 305
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.99 E-value=3.5e-10 Score=75.35 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=42.4
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
|++|+. |+++|||||+|.+.++|++|++ +|+..+.|+.|.|.++..+
T Consensus 52 i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 52 FIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp EEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECHH
T ss_pred EEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCHH
Confidence 567775 9999999999999999999997 9999999999999998543
No 306
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=9.4e-10 Score=71.34 Aligned_cols=48 Identities=23% Similarity=0.387 Sum_probs=42.3
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
|++|+ +.++|||||+|.+.++|++|++.|++..+.|++|+|.++.++.
T Consensus 47 i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 47 MITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPS 94 (103)
T ss_dssp EECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTT
T ss_pred EEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCc
Confidence 45564 3479999999999999999999999999999999999987654
No 307
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=6.4e-10 Score=73.48 Aligned_cols=49 Identities=20% Similarity=0.504 Sum_probs=43.5
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCcee--------CCceeEEeecCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYC--------SSRPMSIDVATPK 50 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~--------~g~~i~v~~~~~~ 50 (192)
+|++|+ +|.++|||||+|.+.++|++|++.|||..+ .+++|.|.++.++
T Consensus 56 ~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 56 RILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp EEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred EEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCC
Confidence 367787 899999999999999999999999999999 5788999988743
No 308
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.98 E-value=5.2e-10 Score=78.90 Aligned_cols=50 Identities=22% Similarity=0.336 Sum_probs=46.1
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
|++++.+|.++|||||+|.+.++|+.||+.|||..|.|++|.|.++.++.
T Consensus 104 i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 153 (165)
T 1rk8_A 104 LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 153 (165)
T ss_dssp EEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC
T ss_pred EEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 56788899999999999999999999999999999999999999986553
No 309
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=4.7e-10 Score=73.00 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=42.4
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
|++| .+|+++|||||+|.+.++|++|++. ++..+.|+.|.|.++..+
T Consensus 48 i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~ 94 (104)
T 1wg5_A 48 LPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRA 94 (104)
T ss_dssp CCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTT
T ss_pred EEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHH
Confidence 5667 6899999999999999999999976 999999999999998654
No 310
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.97 E-value=9.6e-10 Score=70.33 Aligned_cols=45 Identities=20% Similarity=0.396 Sum_probs=41.7
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 7 NTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 7 ~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
.+|.++|||||+|.+.++|++|++.|+|..+.|++|.|.++.++.
T Consensus 48 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 48 QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 478999999999999999999999999999999999999987653
No 311
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.96 E-value=4.3e-10 Score=68.59 Aligned_cols=46 Identities=22% Similarity=0.379 Sum_probs=41.3
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeec
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVA 47 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 47 (192)
++++|+.+|.++|||||+|.+.++|++|++ +++..+.|+.|.|.++
T Consensus 30 ~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 30 ELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred EEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 467788899999999999999999999996 5899999999999864
No 312
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=1.2e-09 Score=70.79 Aligned_cols=49 Identities=27% Similarity=0.563 Sum_probs=42.8
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
|++|+ +.++|||||+|.+.++|++|++.|++..+.|++|+|.++.++..
T Consensus 47 i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 47 IIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 95 (103)
T ss_dssp EECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCC
T ss_pred EEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCC
Confidence 45564 34899999999999999999999999999999999999877643
No 313
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=4.3e-10 Score=73.11 Aligned_cols=46 Identities=15% Similarity=0.093 Sum_probs=41.5
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 48 (192)
+|++|+. |.++|||||+|.+.++|++|+. +++..+.|++|.|.+..
T Consensus 42 ~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 42 QMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp EEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred EEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 3677875 9999999999999999999997 99999999999999754
No 314
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.96 E-value=3.7e-10 Score=73.88 Aligned_cols=47 Identities=11% Similarity=0.330 Sum_probs=42.7
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
|++|+. |+++|||||+|.+.++|++|++ +++..+.|+.|.|.++..+
T Consensus 46 i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 46 FLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINNE 92 (107)
T ss_dssp CCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHH
T ss_pred EEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCHH
Confidence 677875 9999999999999999999997 9999999999999998643
No 315
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=1.2e-09 Score=70.79 Aligned_cols=50 Identities=26% Similarity=0.419 Sum_probs=44.2
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
+|++|+.+|.++|||||+|.+.++|++|++ ++..+.|+.|.|.++.++..
T Consensus 46 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 46 QVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNSKQS 95 (103)
T ss_dssp EEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCTTCC
T ss_pred EEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCCCCc
Confidence 367788899999999999999999999997 57789999999999987644
No 316
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.94 E-value=3.5e-10 Score=70.18 Aligned_cols=40 Identities=18% Similarity=0.398 Sum_probs=37.0
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCc-eeEEe
Q 037126 6 SNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSR-PMSID 45 (192)
Q Consensus 6 ~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~-~i~v~ 45 (192)
+.+|.++|||||+|.+.++|++|++.|||..+.|+ +|+|.
T Consensus 41 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 41 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCCC
T ss_pred CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEeC
Confidence 45899999999999999999999999999999999 88763
No 317
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.94 E-value=5.7e-10 Score=76.78 Aligned_cols=46 Identities=26% Similarity=0.467 Sum_probs=42.5
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 6 SNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 6 ~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
..+|.++|||||+|.+.++|++|++.|||..+.|++|.|.++....
T Consensus 86 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 86 MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSAR 131 (143)
T ss_dssp EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCSC
T ss_pred ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 4589999999999999999999999999999999999999987653
No 318
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.94 E-value=6.4e-10 Score=74.00 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=38.6
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecC
Q 037126 8 TDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48 (192)
Q Consensus 8 tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 48 (192)
+++++|+|||+|.+.++|.+|++.|||..+.||.|+|.+..
T Consensus 67 ~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 67 DAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp TCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 46789999999999999999999999999999999999874
No 319
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.92 E-value=1.8e-09 Score=71.06 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=38.6
Q ss_pred CCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 9 DRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 9 g~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
+.++|||||+|.+.++|++|++.|||..+.|+.|+|+++..+
T Consensus 64 ~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 64 RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 468999999999999999999999999999999999998654
No 320
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=1.3e-09 Score=71.47 Aligned_cols=47 Identities=28% Similarity=0.604 Sum_probs=41.8
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
|++|+ +.++|||||+|.+.++|++|++.|+|..+.|++|+|.++.++
T Consensus 61 i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 61 IIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp ECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred EEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 45554 459999999999999999999999999999999999998764
No 321
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.4e-09 Score=69.73 Aligned_cols=44 Identities=11% Similarity=0.292 Sum_probs=40.6
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 8 TDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 8 tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
++.++|||||+|.+.++|++|++.|||..+.|+.|.|.++.++.
T Consensus 52 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 52 WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 45789999999999999999999999999999999999987653
No 322
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.89 E-value=9.7e-10 Score=70.40 Aligned_cols=44 Identities=25% Similarity=0.421 Sum_probs=41.0
Q ss_pred CCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 8 TDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 8 tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
+|.++|||||+|.+.++|+.|++.|+|..+.|++|+|.++.++.
T Consensus 47 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 47 SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCC
T ss_pred CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCC
Confidence 57889999999999999999999999999999999999987654
No 323
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=3.3e-09 Score=69.46 Aligned_cols=45 Identities=16% Similarity=0.313 Sum_probs=41.3
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 7 NTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 7 ~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
.++.++|||||+|.+.++|++|++.||+..+.|+.|+|.++.++.
T Consensus 56 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 56 NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGR 100 (109)
T ss_dssp CSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred ECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCC
Confidence 356789999999999999999999999999999999999987654
No 324
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.88 E-value=4.3e-09 Score=77.61 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=60.5
Q ss_pred CceEEEcCCCC-----CCCHHHHHHHhccCCCeEEEEEe----------CCCceEEEEeCCHHHHHHHHHHhcCCeeCCe
Q 037126 86 NATIFVGALDS-----DVSDKDLREPFSHFGEILSVKIP----------VGKGCGFVQFANRKDAEVALQKLQGTAIGKQ 150 (192)
Q Consensus 86 ~~~l~v~~lp~-----~~~~~~l~~~f~~~g~i~~~~~~----------~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~ 150 (192)
...+.+.++-. .-.+++|.+.|++||.|..+.+. +++|.+||+|.+.++|.+|+..|+|+.++||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 44555555422 23457899999999999999987 3468999999999999999999999999999
Q ss_pred EEEEEecC
Q 037126 151 TVRLSSGH 158 (192)
Q Consensus 151 ~l~v~~a~ 158 (192)
+|.+.|..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999974
No 325
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.88 E-value=9.5e-10 Score=73.96 Aligned_cols=47 Identities=15% Similarity=0.253 Sum_probs=41.5
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP 49 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~ 49 (192)
+|++|+. |+++|||||+|.+.++|++|++ +++..+.|++|.|.++..
T Consensus 74 ~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 74 TLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp ECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEECH
T ss_pred EEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEECCH
Confidence 3677875 9999999999999999999996 588999999999998753
No 326
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.87 E-value=1.1e-09 Score=73.01 Aligned_cols=50 Identities=12% Similarity=0.170 Sum_probs=42.1
Q ss_pred CccccCCCCCcceEEEEEecC----HHH----HHHHHH--HhcCceeCCceeEEeecCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGD----ENE----RSRAMI--EMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~----~~~----A~~A~~--~l~~~~~~g~~i~v~~~~~~ 50 (192)
+++.|+.||+++|||||+|.+ +++ |.+|+. .++|..+.|++|+|.+-...
T Consensus 37 ~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 37 EAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKHS 96 (136)
T ss_dssp EEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCTT
T ss_pred EEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECccc
Confidence 478999999999999999996 444 788988 78999999999999986544
No 327
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=2.6e-09 Score=67.37 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=38.4
Q ss_pred eEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCcc
Q 037126 13 GYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53 (192)
Q Consensus 13 g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~ 53 (192)
|+|||+|.+.++|++|++.|+|..+.||+|+|.++..+...
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNREL 87 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcce
Confidence 99999999999999999999999999999999999876543
No 328
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.83 E-value=2.6e-09 Score=76.17 Aligned_cols=48 Identities=29% Similarity=0.432 Sum_probs=44.4
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
|+.|+ +|.++|||||+|.+.++|++|++.|+|..+.|++|.|+++...
T Consensus 120 i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 120 VDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp ECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred EEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 56777 8999999999999999999999999999999999999998754
No 329
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.83 E-value=4.6e-09 Score=66.07 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=38.4
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 10 RTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 10 ~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
.++|||||+|.+.++|++|++.|||..+.|++|+|+++...
T Consensus 38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 68999999999999999999999999999999999998544
No 330
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=5.9e-09 Score=68.66 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=39.2
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 10 RTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 10 ~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
.++|||||+|.+.++|++|++.|||..+.|++|.|.++.++.
T Consensus 62 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 62 HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 489999999999999999999999999999999999987654
No 331
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=6e-09 Score=66.75 Aligned_cols=44 Identities=20% Similarity=0.411 Sum_probs=40.2
Q ss_pred CCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 9 DRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 9 g~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
+.++|||||+|.+.++|++|++.|+|..+.|++|+|.++.++..
T Consensus 46 ~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 46 DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 36899999999999999999999999999999999999876643
No 332
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.83 E-value=8e-10 Score=75.67 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=43.8
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
+|++|+. |+++|||||+|.+.++|++|| .+|+..+.|+.|.|.++....
T Consensus 76 ~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 76 HIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp ECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred EEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 3678874 999999999999999999999 899999999999999986553
No 333
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=5.1e-09 Score=66.49 Aligned_cols=43 Identities=33% Similarity=0.501 Sum_probs=39.5
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcC-ceeCCceeEEeecCCCCc
Q 037126 10 RTKGYGFVRFGDENERSRAMIEMNG-VYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 10 ~s~g~afV~f~~~~~A~~A~~~l~~-~~~~g~~i~v~~~~~~~~ 52 (192)
.++|||||+|.+.++|++|++.||| ..+.|++|+|.++.++..
T Consensus 42 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 42 LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKL 85 (93)
T ss_dssp EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCccc
Confidence 4789999999999999999999999 999999999999976643
No 334
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=1.6e-09 Score=72.58 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=41.1
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP 49 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~ 49 (192)
|++|+ +|+++|||||+|.+.++|++|++. |+..+.|+.|.|..+..
T Consensus 59 i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~ 104 (123)
T 2dha_A 59 FVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTA 104 (123)
T ss_dssp EEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECH
T ss_pred EEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCH
Confidence 56674 899999999999999999999975 99999999999998754
No 335
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.81 E-value=5e-09 Score=67.38 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=36.7
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCce--eCCceeEEeecCCC
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGVY--CSSRPMSIDVATPK 50 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~~--~~g~~i~v~~~~~~ 50 (192)
+||||||+|.+.++|.+|++.|++.. +.|++|+|+++..+
T Consensus 56 ~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 56 KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 68999999999999999999999875 78999999998765
No 336
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.77 E-value=7.8e-09 Score=83.62 Aligned_cols=52 Identities=17% Similarity=0.433 Sum_probs=47.4
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
+|+.|+.+|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.++.....
T Consensus 133 ~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 133 HMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred EeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence 4678888999999999999999999999999999999999999999876543
No 337
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=6.6e-09 Score=67.47 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=36.1
Q ss_pred ceEEEEEecCHHHHHHHHHHhcC--ceeCCceeEEeecCCCC
Q 037126 12 KGYGFVRFGDENERSRAMIEMNG--VYCSSRPMSIDVATPKK 51 (192)
Q Consensus 12 ~g~afV~f~~~~~A~~A~~~l~~--~~~~g~~i~v~~~~~~~ 51 (192)
||||||+|.+.++|+.|++.+++ ..+.|++|+|.++..+.
T Consensus 52 kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 52 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 79999999999999999998864 78999999999987654
No 338
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.77 E-value=6.4e-09 Score=67.09 Aligned_cols=40 Identities=10% Similarity=0.293 Sum_probs=37.8
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCC
Q 037126 10 RTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATP 49 (192)
Q Consensus 10 ~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~ 49 (192)
.++|||||+|.+.++|++|++.|||..+.|+.|+|.++.+
T Consensus 61 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 5789999999999999999999999999999999999864
No 339
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=9.8e-09 Score=67.19 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=38.4
Q ss_pred ceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 12 KGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 12 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
+|||||+|.+.++|++|++.|+|..+.|+.|+|.++.++..
T Consensus 61 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 89999999999999999999999999999999999877643
No 340
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=1.7e-08 Score=64.89 Aligned_cols=42 Identities=26% Similarity=0.595 Sum_probs=38.8
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 10 RTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 10 ~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
..+|||||+|.+.++|++|++.|||..+.|+.|+|.++.++.
T Consensus 49 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 49 KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred EeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 357999999999999999999999999999999999987664
No 341
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.75 E-value=2.2e-09 Score=69.44 Aligned_cols=48 Identities=27% Similarity=0.493 Sum_probs=42.8
Q ss_pred CccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
+|++|+ +|.++|||||+|.+.++|++|++ ++..+.|+.|.|.++..+.
T Consensus 40 ~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~~ 87 (102)
T 2xs2_A 40 KIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRKQ 87 (102)
T ss_dssp EEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEECC
T ss_pred EEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcCc
Confidence 367787 99999999999999999999997 9999999999999886543
No 342
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.75 E-value=1.1e-08 Score=65.72 Aligned_cols=42 Identities=19% Similarity=0.432 Sum_probs=38.9
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 10 RTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 10 ~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
.++|||||+|.+.++|++|++.|+|..+.|++|+|.++.++.
T Consensus 49 ~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 49 KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 358999999999999999999999999999999999987654
No 343
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.74 E-value=1.8e-08 Score=64.53 Aligned_cols=40 Identities=13% Similarity=0.351 Sum_probs=37.5
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
++|||||+|.+.++|++|++.|+|..+.|+.|+|+++..+
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 4899999999999999999999999999999999998754
No 344
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=1.6e-08 Score=63.84 Aligned_cols=41 Identities=20% Similarity=0.375 Sum_probs=38.2
Q ss_pred ceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 12 KGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 12 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
+|||||+|.+.++|++|++.|++..+.|++|+|+++.++..
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 79999999999999999999999999999999999876643
No 345
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.73 E-value=1.2e-08 Score=67.33 Aligned_cols=38 Identities=11% Similarity=0.214 Sum_probs=36.6
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecC
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 48 (192)
++|+|||+|.+.++|.+|++.|||..+.||.|+|.++.
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 69999999999999999999999999999999999975
No 346
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.72 E-value=1.7e-08 Score=67.41 Aligned_cols=42 Identities=19% Similarity=0.399 Sum_probs=39.3
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 10 RTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 10 ~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
.++|||||+|.+.++|++|++.|+|..+.|+.|.|.++.++.
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 689999999999999999999999999999999999987653
No 347
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.71 E-value=1.9e-08 Score=64.30 Aligned_cols=40 Identities=15% Similarity=0.371 Sum_probs=37.6
Q ss_pred ceEEEEEecCHHHHHHHHHHhcCceeC--CceeEEeecCCCC
Q 037126 12 KGYGFVRFGDENERSRAMIEMNGVYCS--SRPMSIDVATPKK 51 (192)
Q Consensus 12 ~g~afV~f~~~~~A~~A~~~l~~~~~~--g~~i~v~~~~~~~ 51 (192)
+|||||+|.+.++|++|++.||+..+. |++|+|.++.++.
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 899999999999999999999999999 9999999997653
No 348
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.70 E-value=2.1e-08 Score=65.56 Aligned_cols=40 Identities=20% Similarity=0.492 Sum_probs=37.6
Q ss_pred ceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 12 KGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 12 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
+|||||+|.+.++|++|++.|+|..+.|+.|.|.++.++.
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 7999999999999999999999999999999999987653
No 349
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.69 E-value=2.3e-08 Score=65.36 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=36.8
Q ss_pred eEEEEEecCHHHHHHHHHHhcCceeCC-----ceeEEeecCCCC
Q 037126 13 GYGFVRFGDENERSRAMIEMNGVYCSS-----RPMSIDVATPKK 51 (192)
Q Consensus 13 g~afV~f~~~~~A~~A~~~l~~~~~~g-----~~i~v~~~~~~~ 51 (192)
|||||+|.+.++|++||+.||+..+.| +.|+|.++.++.
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRS 94 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCS
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCC
Confidence 999999999999999999999999999 999999987754
No 350
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.69 E-value=2e-08 Score=70.24 Aligned_cols=43 Identities=12% Similarity=0.224 Sum_probs=38.7
Q ss_pred CCcceEEEEEecCHHHHHHHHHHhcCceeCC--ceeEEeecCCCC
Q 037126 9 DRTKGYGFVRFGDENERSRAMIEMNGVYCSS--RPMSIDVATPKK 51 (192)
Q Consensus 9 g~s~g~afV~f~~~~~A~~A~~~l~~~~~~g--~~i~v~~~~~~~ 51 (192)
..++|||||+|.+.++|+.|++.|||..+.| ++|+|++++++.
T Consensus 81 k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 81 KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 3478999999999999999999999999966 999999998763
No 351
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=2.6e-08 Score=64.37 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=36.0
Q ss_pred ceEEEEEecCHHHHHHHHHHhc--CceeCCceeEEeecCCCC
Q 037126 12 KGYGFVRFGDENERSRAMIEMN--GVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 12 ~g~afV~f~~~~~A~~A~~~l~--~~~~~g~~i~v~~~~~~~ 51 (192)
+|||||+|.+.++|+.|++.|+ +..+.|++|+|.++..+.
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 51 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCccc
Confidence 8999999999999999999774 677999999999987654
No 352
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.69 E-value=1.9e-08 Score=65.86 Aligned_cols=41 Identities=29% Similarity=0.551 Sum_probs=38.3
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
++|||||+|.+.++|++|++.|++..+.|+.|+|+++..+.
T Consensus 61 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 61 HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 68999999999999999999999999999999999987543
No 353
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.68 E-value=2.1e-08 Score=62.44 Aligned_cols=38 Identities=13% Similarity=0.272 Sum_probs=35.6
Q ss_pred cceEEEEEecCHHHHHHHHHHh-cCceeCCceeEEeecC
Q 037126 11 TKGYGFVRFGDENERSRAMIEM-NGVYCSSRPMSIDVAT 48 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l-~~~~~~g~~i~v~~~~ 48 (192)
++|||||+|.+.++|++|++.| ++..+.|++|+|++++
T Consensus 47 ~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 47 RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 5899999999999999999988 9999999999999863
No 354
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.68 E-value=1.6e-08 Score=66.51 Aligned_cols=43 Identities=14% Similarity=0.245 Sum_probs=37.3
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcC--ceeCCceeEEeecCCCCc
Q 037126 10 RTKGYGFVRFGDENERSRAMIEMNG--VYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 10 ~s~g~afV~f~~~~~A~~A~~~l~~--~~~~g~~i~v~~~~~~~~ 52 (192)
+++|||||+|.+.++|+.|++.|++ ..+.|++|+|.++..+..
T Consensus 60 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 60 RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKK 104 (112)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccc
Confidence 4689999999999999999998865 559999999999876543
No 355
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.68 E-value=1.9e-08 Score=65.10 Aligned_cols=41 Identities=10% Similarity=0.199 Sum_probs=36.2
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCc--eeCCceeEEeecCCCC
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGV--YCSSRPMSIDVATPKK 51 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~--~~~g~~i~v~~~~~~~ 51 (192)
.+|||||+|.+.++|+.|++.|++. .+.|++|+|.++....
T Consensus 51 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 51 KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 93 (102)
T ss_dssp SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCT
T ss_pred CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCC
Confidence 4689999999999999999999864 5999999999997553
No 356
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=4.9e-08 Score=61.78 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=37.7
Q ss_pred ceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 12 KGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 12 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
++||||+|.+.++|++|++.||+..+.|+.|+|.++.++..
T Consensus 44 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 44 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 56999999999999999999999999999999999976643
No 357
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.67 E-value=3.6e-08 Score=66.40 Aligned_cols=41 Identities=12% Similarity=0.312 Sum_probs=37.7
Q ss_pred cceE-EEEEecCHHHHHHHHHHhcCceeCC--ceeEEeecCCCC
Q 037126 11 TKGY-GFVRFGDENERSRAMIEMNGVYCSS--RPMSIDVATPKK 51 (192)
Q Consensus 11 s~g~-afV~f~~~~~A~~A~~~l~~~~~~g--~~i~v~~~~~~~ 51 (192)
++|| |||+|.+.++|+.|++.|||..+.| +.|+|++++.+.
T Consensus 64 ~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 64 NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 4688 9999999999999999999999988 899999998664
No 358
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.66 E-value=4.1e-08 Score=63.52 Aligned_cols=42 Identities=31% Similarity=0.518 Sum_probs=38.4
Q ss_pred ceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCcc
Q 037126 12 KGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKAS 53 (192)
Q Consensus 12 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~ 53 (192)
+|||||+|.+.++|++|++.|++..+.|++|.|.++.++...
T Consensus 45 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 45 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 679999999999999999999999999999999999776443
No 359
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=2.4e-08 Score=66.35 Aligned_cols=41 Identities=15% Similarity=0.245 Sum_probs=36.6
Q ss_pred cceEEEEEecCHHHHHHHHHHhcC--ceeCCceeEEeecCCCC
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNG--VYCSSRPMSIDVATPKK 51 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~--~~~~g~~i~v~~~~~~~ 51 (192)
.+|||||+|.+.++|++|++.+++ ..+.|++|+|.++..+.
T Consensus 66 ~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 66 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCC
Confidence 389999999999999999998885 57999999999987654
No 360
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.65 E-value=2.1e-08 Score=64.09 Aligned_cols=41 Identities=12% Similarity=0.311 Sum_probs=38.0
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
++|||||+|.+.++|+.|++.|+|..+.|++|+|+++..+.
T Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 44 KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 58999999999999999999999999999999999987653
No 361
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.65 E-value=2.2e-08 Score=65.82 Aligned_cols=41 Identities=15% Similarity=0.074 Sum_probs=38.0
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 10 RTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 10 ~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
.++|||||+|.+.++|+.|++.|||..+.|++|.|+++...
T Consensus 44 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 44 EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 47899999999999999999999999999999999998643
No 362
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.64 E-value=5e-08 Score=61.46 Aligned_cols=40 Identities=23% Similarity=0.502 Sum_probs=37.2
Q ss_pred ceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 12 KGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 12 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
+|||||+|.+.++|++|++.|+|..+.|+.|+|.++.++.
T Consensus 43 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 43 KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 5699999999999999999999999999999999987653
No 363
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=3.5e-08 Score=65.13 Aligned_cols=44 Identities=14% Similarity=0.078 Sum_probs=34.9
Q ss_pred ccccCCC---CCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeec
Q 037126 2 VIIDSNT---DRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVA 47 (192)
Q Consensus 2 v~~d~~t---g~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 47 (192)
++.++.+ |+++|||||+|.+.++|++|++.|+ .+.|+.+.+..+
T Consensus 39 ~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~~ 85 (114)
T 2dnl_A 39 WPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCVSS 85 (114)
T ss_dssp CTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEECC
T ss_pred EeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEeccC
Confidence 4556656 7999999999999999999999884 366666666543
No 364
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.63 E-value=4e-08 Score=67.97 Aligned_cols=40 Identities=20% Similarity=0.460 Sum_probs=38.0
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
++|||||+|.+.++|+.|++.|||..+.|++|+|.++.++
T Consensus 109 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 109 PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 6999999999999999999999999999999999998765
No 365
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.61 E-value=4e-08 Score=61.36 Aligned_cols=36 Identities=22% Similarity=0.546 Sum_probs=34.0
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEee
Q 037126 10 RTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDV 46 (192)
Q Consensus 10 ~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 46 (192)
.++|||||+|.+.++|++|+ .|||..+.|+.|+|+.
T Consensus 51 ~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 51 QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp SSSSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred CCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 45899999999999999999 9999999999999975
No 366
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.61 E-value=3.3e-08 Score=64.18 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=36.3
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCc--eeCCceeEEeecCCCC
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGV--YCSSRPMSIDVATPKK 51 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~--~~~g~~i~v~~~~~~~ 51 (192)
.||||||+|.+.++|++|++.|++. .+.|++|+|.++..+.
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 50 FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence 4899999999999999999988764 4899999999987654
No 367
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=6.3e-08 Score=61.67 Aligned_cols=38 Identities=11% Similarity=0.204 Sum_probs=35.6
Q ss_pred eEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 13 GYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 13 g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
|.|||+|.+.++|++|++.|||..+.|++|+|.++.++
T Consensus 55 ~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 55 AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 44999999999999999999999999999999999876
No 368
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=3.7e-08 Score=64.84 Aligned_cols=40 Identities=23% Similarity=0.425 Sum_probs=36.3
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCcee-----CCceeEEeecCCC
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGVYC-----SSRPMSIDVATPK 50 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~~~-----~g~~i~v~~~~~~ 50 (192)
.+|||||+|.+.++|++|++.|||..+ .|++|.|.++..-
T Consensus 62 ~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 62 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKV 106 (114)
T ss_dssp TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccC
Confidence 489999999999999999999999988 7899999997643
No 369
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=4.6e-08 Score=62.18 Aligned_cols=46 Identities=15% Similarity=0.309 Sum_probs=39.4
Q ss_pred ccccCCCCCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 2 VIIDSNTDRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 2 v~~d~~tg~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
|+.|+.+|. ||||+|.+.++|++|++ |+|..+.|+.|.|.++..+.
T Consensus 38 v~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 38 VVMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp EEECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred EEEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 345666665 99999999999999998 99999999999999876543
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=7.4e-08 Score=62.03 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=35.7
Q ss_pred CCcceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCC
Q 037126 9 DRTKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKK 51 (192)
Q Consensus 9 g~s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 51 (192)
++++|||||+|.+.++|+.|++.+++ +.|++|+|.++..+.
T Consensus 51 ~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 51 SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 57899999999999999999987554 689999999987653
No 371
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.56 E-value=5.9e-07 Score=57.37 Aligned_cols=76 Identities=13% Similarity=0.117 Sum_probs=66.9
Q ss_pred CCceEEEcCCCCCCC-H----HHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecCC
Q 037126 85 NNATIFVGALDSDVS-D----KDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGHN 159 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~-~----~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 159 (192)
-..+|++.||+..+- . +.++++|..|+.+......++-.-..|.|.+.++|.+|...||+..+.|+.|+|.|+.+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 346799999988652 2 56789999999999999999988899999999999999999999999999999999974
Q ss_pred C
Q 037126 160 P 160 (192)
Q Consensus 160 ~ 160 (192)
.
T Consensus 84 ~ 84 (104)
T 1wey_A 84 L 84 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 372
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.53 E-value=1.1e-07 Score=63.55 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=35.8
Q ss_pred eE-EEEEecCHHHHHHHHHHhcCceeCC--ceeEEeecCCCC
Q 037126 13 GY-GFVRFGDENERSRAMIEMNGVYCSS--RPMSIDVATPKK 51 (192)
Q Consensus 13 g~-afV~f~~~~~A~~A~~~l~~~~~~g--~~i~v~~~~~~~ 51 (192)
|| |||+|.+.++|+.|++.|||..|.| ++|+|+++.++.
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 86 9999999999999999999999988 699999987664
No 373
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.47 E-value=1.7e-07 Score=61.91 Aligned_cols=37 Identities=22% Similarity=0.400 Sum_probs=32.7
Q ss_pred eEEEEEecCHHHHHHHHHHhcCceeCCce-----eEEeecCC
Q 037126 13 GYGFVRFGDENERSRAMIEMNGVYCSSRP-----MSIDVATP 49 (192)
Q Consensus 13 g~afV~f~~~~~A~~A~~~l~~~~~~g~~-----i~v~~~~~ 49 (192)
|||||+|.+.++|++||+.|||..+.|+. |+|....+
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 99999999999999999999999999998 66666543
No 374
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.35 E-value=4.1e-07 Score=67.57 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=37.1
Q ss_pred CcceEEEEEecCHHHHHHHHHHhcCcee------------CCceeEEeecCCC
Q 037126 10 RTKGYGFVRFGDENERSRAMIEMNGVYC------------SSRPMSIDVATPK 50 (192)
Q Consensus 10 ~s~g~afV~f~~~~~A~~A~~~l~~~~~------------~g~~i~v~~~~~~ 50 (192)
.++|||||+|.+.++|+.|+++|+|..+ .|+.|.|.++...
T Consensus 177 ~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 177 ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 4689999999999999999999999999 8999999998755
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=6.8e-07 Score=55.83 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=32.5
Q ss_pred EEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCC
Q 037126 15 GFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPK 50 (192)
Q Consensus 15 afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 50 (192)
+||+|.+.++|.+|++ |||..+.||.|+|+...+.
T Consensus 52 ~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 52 MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCS
T ss_pred EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCC
Confidence 8999999999999997 9999999999999997643
No 376
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.17 E-value=2.3e-06 Score=53.71 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=28.7
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCce--eCCceeEEeecCCCC
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGVY--CSSRPMSIDVATPKK 51 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~~--~~g~~i~v~~~~~~~ 51 (192)
++|||||+|.+.++|++ +++.. +.|+.|.|.++.++.
T Consensus 47 srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 47 FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPKH 85 (89)
T ss_dssp CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC---
T ss_pred CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCCC
Confidence 89999999999999984 45544 569999999987653
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.12 E-value=2.2e-06 Score=53.77 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=31.2
Q ss_pred EEEEecCHHHHHHHHHHhcCceeCCceeEEeecC
Q 037126 15 GFVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48 (192)
Q Consensus 15 afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 48 (192)
+||+|.+.++|.+|++ |+|..+.||.|+|.+-.
T Consensus 61 ~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 61 MLVTFADSHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp EEEECSCSHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred EEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 9999999999999997 99999999999998754
No 378
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.01 E-value=2.2e-06 Score=53.46 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=31.9
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecCCCCc
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVATPKKA 52 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 52 (192)
++|||||+|.+.++|++|+. ....+.|++|.|.++.++..
T Consensus 41 ~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 41 FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCCC
T ss_pred CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCCC
Confidence 89999999999999986542 23456999999999876643
No 379
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.92 E-value=8.7e-05 Score=46.62 Aligned_cols=58 Identities=17% Similarity=0.338 Sum_probs=48.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhc
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 143 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 143 (192)
..-.+++++ ++|+.+...||.++|+.|| -..|.++.+ ..|||.|.+++.|..|+..+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidD-TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEET-TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcC-CeEEEEecCHHHHHHHHHhcc
Confidence 344566777 9999999999999999998 455677776 569999999999999999763
No 380
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=0.00037 Score=44.27 Aligned_cols=75 Identities=23% Similarity=0.226 Sum_probs=62.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcc-----CCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCCeEEEEEecC
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSH-----FGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSSGH 158 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~-----~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 158 (192)
....+|.|.|||..++++.|+-.|++ -|.|..+.... +.|+|+|.+...|+..|+. ..+.+.+..|.|...-
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCC
Confidence 45678999999999999999999976 26888888877 8899999999999999873 3567888999998865
Q ss_pred CCC
Q 037126 159 NPG 161 (192)
Q Consensus 159 ~~~ 161 (192)
+..
T Consensus 83 ~~~ 85 (104)
T 2dhx_A 83 PRA 85 (104)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 381
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.91 E-value=1.2e-05 Score=62.88 Aligned_cols=38 Identities=24% Similarity=0.494 Sum_probs=33.1
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCceeC---Cc--eeEEeecC
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGVYCS---SR--PMSIDVAT 48 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~~~~---g~--~i~v~~~~ 48 (192)
+||||||+|.+.++|++|++.|||..+. |+ +|.+.+..
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 6899999999999999999999999873 45 67888763
No 382
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.64 E-value=0.00031 Score=46.00 Aligned_cols=74 Identities=14% Similarity=0.212 Sum_probs=60.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCCeeCC-eEEEEEecC
Q 037126 83 ESNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGK-QTVRLSSGH 158 (192)
Q Consensus 83 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g-~~l~v~~a~ 158 (192)
.....-|.|-+.|.... ..+.+.|++||.|.+.........-.|.|.+..+|++||. .||..++| -.|-|.+..
T Consensus 21 ~~~~~wVtVFGFp~~~~-~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQASA-SYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp CGGGGEEEEECCCGGGH-HHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCCCEEEEECCCHHHH-HHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 34567788889988754 5567789999999998886677899999999999999999 59999985 567777753
No 383
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.55 E-value=0.00015 Score=45.65 Aligned_cols=54 Identities=19% Similarity=0.347 Sum_probs=46.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhc
Q 037126 87 ATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 143 (192)
Q Consensus 87 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 143 (192)
+.+++ ++|..+...||.++|++|| -..|.++.+ ..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-CeEEEEecCHHHHHHHHHhcc
Confidence 45667 9999999999999999998 666777776 569999999999999999764
No 384
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.36 E-value=0.0012 Score=41.26 Aligned_cols=62 Identities=13% Similarity=0.247 Sum_probs=52.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCC--------ceEEEEeCCHHHHHHHHHHhcCCeeC
Q 037126 87 ATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGK--------GCGFVQFANRKDAEVALQKLQGTAIG 148 (192)
Q Consensus 87 ~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~--------g~afv~f~~~~~a~~a~~~l~g~~~~ 148 (192)
.+|.|++||+..+|+++.+.++....+.....+.++ .-|+|.|.+.+++..-...++|..+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 468899999999999999999998877666665532 56999999999999999999999773
No 385
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.82 E-value=0.0017 Score=43.10 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=54.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeEEE-EEe----------------C---CCceEEEEeCCHHHHHHHHHHhcCC
Q 037126 86 NATIFVGALDSDVSDKDLREPFSHFGEILSV-KIP----------------V---GKGCGFVQFANRKDAEVALQKLQGT 145 (192)
Q Consensus 86 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~-~~~----------------~---~~g~afv~f~~~~~a~~a~~~l~g~ 145 (192)
..-+.|-+.|..... .+.+.|++||.|.+- ... + +....-|+|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 345667788776654 456779999998772 111 1 35677899999999999999 6999
Q ss_pred eeCCeEEEEEecC
Q 037126 146 AIGKQTVRLSSGH 158 (192)
Q Consensus 146 ~~~g~~l~v~~a~ 158 (192)
.++|.-|-|.+.+
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999988888875
No 386
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.59 E-value=0.0092 Score=37.52 Aligned_cols=73 Identities=10% Similarity=0.150 Sum_probs=53.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCC--------CceEEEEeCCHHHHHHHHHHhcCCeeCC---e--E
Q 037126 85 NNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVG--------KGCGFVQFANRKDAEVALQKLQGTAIGK---Q--T 151 (192)
Q Consensus 85 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~--------~g~afv~f~~~~~a~~a~~~l~g~~~~g---~--~ 151 (192)
.+-+|.|+.||+..+|+++.+.++..-.+.....+.+ -.-|+|.|.+.++...-...++|..+-+ . +
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 3457889999999999998888877644433333332 1569999999999999999999997732 2 3
Q ss_pred EEEEec
Q 037126 152 VRLSSG 157 (192)
Q Consensus 152 l~v~~a 157 (192)
..|+||
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 445555
No 387
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.48 E-value=0.0021 Score=52.01 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=43.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCc-eEEEEeCCHHHHHHHHH
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKG-CGFVQFANRKDAEVALQ 140 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g-~afv~f~~~~~a~~a~~ 140 (192)
...+.|+|. +|..+++.+|.+.|++||.|..+.+..++| +|.|+|.+.+.+..++.
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 345789997 799999999999999999999999988765 89999999999887754
No 388
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.01 Score=38.06 Aligned_cols=35 Identities=11% Similarity=0.216 Sum_probs=31.5
Q ss_pred eEEEEEecCHHHHHHHHHHhcCceeCCceeEEeec
Q 037126 13 GYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVA 47 (192)
Q Consensus 13 g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 47 (192)
|=|+|+|.|...|-+|.=+|+|.+|.|++|++.-.
T Consensus 63 ~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 63 NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 44999999999999988899999999999999743
No 389
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.50 E-value=0.022 Score=37.50 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=30.2
Q ss_pred EEEEEecC-HHHHHHHHHHhc--CceeCCceeEEeecC
Q 037126 14 YGFVRFGD-ENERSRAMIEMN--GVYCSSRPMSIDVAT 48 (192)
Q Consensus 14 ~afV~f~~-~~~A~~A~~~l~--~~~~~g~~i~v~~~~ 48 (192)
.|||.|.+ +++|..|++.++ +..+.|..+.++...
T Consensus 57 tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 57 EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 49999999 899999999984 678899988887654
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.76 E-value=0.17 Score=32.13 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=33.1
Q ss_pred eEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecC
Q 037126 13 GYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48 (192)
Q Consensus 13 g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 48 (192)
.-..|.|.++++|.+|-..||+..+.|+.++|-++.
T Consensus 47 RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 47 KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp TEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred eEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 346899999999999999999999999999998876
No 391
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.63 E-value=0.21 Score=31.64 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=28.7
Q ss_pred eEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecC
Q 037126 13 GYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48 (192)
Q Consensus 13 g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 48 (192)
+-|+|+|.+.+.|++.++ -....+.+.+|.|.+..
T Consensus 48 ~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAP 82 (104)
T ss_dssp TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECC
T ss_pred CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCC
Confidence 568999999999999994 44567888999997754
No 392
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.65 E-value=0.97 Score=37.11 Aligned_cols=55 Identities=18% Similarity=0.369 Sum_probs=45.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhc
Q 037126 86 NATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQ 143 (192)
Q Consensus 86 ~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 143 (192)
...++++ +|..+...+|.++|+.||. ..|.++.+ ..|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-CeEEEEECCHHHHHHHHHHHH
Confidence 4566666 8889999999999999994 45555554 569999999999999999874
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=82.46 E-value=1.5 Score=28.94 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=30.8
Q ss_pred ceEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecC
Q 037126 12 KGYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48 (192)
Q Consensus 12 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 48 (192)
...-.|+|.+..+|.+|| ..||..+.|.-|-|.+-.
T Consensus 62 ~NWikItYds~~~A~rAL-~~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 62 NSWTKITYDNPASAVDAL-LENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp TTEEEEEBSSHHHHHHHH-TTTTCEETTEECEEEECC
T ss_pred CcEEEEEcCCHHHHHHHH-HhCCeEeCcEEEEEEECC
Confidence 346699999999999999 789999999877777753
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=81.19 E-value=1.6 Score=28.35 Aligned_cols=35 Identities=9% Similarity=0.233 Sum_probs=27.9
Q ss_pred ceEEEEEecCHHHHHHHHHHhcCceeCC-ceeEEeec
Q 037126 12 KGYGFVRFGDENERSRAMIEMNGVYCSS-RPMSIDVA 47 (192)
Q Consensus 12 ~g~afV~f~~~~~A~~A~~~l~~~~~~g-~~i~v~~~ 47 (192)
...-.|.|.+..+|++|| ..||..+.| --|-|.+-
T Consensus 59 ~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 59 GNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp SSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEEC
T ss_pred CCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEEC
Confidence 356789999999999999 679999976 44556553
No 395
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=59.20 E-value=28 Score=21.23 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=52.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeCCCceEEEEeCCHHHHHHHHHHhcCC-------eeCCeEEEEEe
Q 037126 84 SNNATIFVGALDSDVSDKDLREPFSHFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGT-------AIGKQTVRLSS 156 (192)
Q Consensus 84 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~i~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~-------~~~g~~l~v~~ 156 (192)
..++-+-+-|+|..+-..++.-...-.|---.|..+. |.|.|.|.+.++..-|+..|-.. ++.|..+.|--
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--gqamirfqnsdeqrlaiqkllnhnnnklqieirgqicdvis 87 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICDVIS 87 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEEEEC
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeeeeee
Confidence 4567778889999988877766666677666676666 67999999999999998887322 34566655544
Q ss_pred c
Q 037126 157 G 157 (192)
Q Consensus 157 a 157 (192)
.
T Consensus 88 t 88 (129)
T 4eyt_A 88 T 88 (129)
T ss_dssp C
T ss_pred c
Confidence 3
No 396
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=58.46 E-value=9.4 Score=23.82 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=18.3
Q ss_pred eEEEEEecCHHHHHHHHHHhc
Q 037126 13 GYGFVRFGDENERSRAMIEMN 33 (192)
Q Consensus 13 g~afV~f~~~~~A~~A~~~l~ 33 (192)
..|||.|.+++.|..|+..+.
T Consensus 50 TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 50 TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEEecCHHHHHHHHHhcc
Confidence 469999999999999998664
No 397
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=55.84 E-value=14 Score=22.58 Aligned_cols=26 Identities=8% Similarity=0.164 Sum_probs=23.7
Q ss_pred eEEEEEecCHHHHHHHHHHhcCceeC
Q 037126 13 GYGFVRFGDENERSRAMIEMNGVYCS 38 (192)
Q Consensus 13 g~afV~f~~~~~A~~A~~~l~~~~~~ 38 (192)
..|+|.|.+.+++....+.++|..+.
T Consensus 46 SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 46 ARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp EEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred eEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 56999999999999999999998873
No 398
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=53.40 E-value=11 Score=21.74 Aligned_cols=35 Identities=9% Similarity=0.208 Sum_probs=24.3
Q ss_pred eEEEEEecCHHHHHHHHHHhcCceeCCceeEEeecC
Q 037126 13 GYGFVRFGDENERSRAMIEMNGVYCSSRPMSIDVAT 48 (192)
Q Consensus 13 g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 48 (192)
.|.||+-... .|..+++.|++..+.|+.+.|+.+.
T Consensus 41 ~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 41 NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp SCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 3567766554 4778898999999999999988753
No 399
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=36.16 E-value=26 Score=22.13 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=14.8
Q ss_pred CCCcceEEEEEecCHHHHHH
Q 037126 8 TDRTKGYGFVRFGDENERSR 27 (192)
Q Consensus 8 tg~s~g~afV~f~~~~~A~~ 27 (192)
.|.+.|||.| |.+.+.|.+
T Consensus 70 ~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 70 SYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CSEEEEEEEE-ESSHHHHHH
T ss_pred CceEEEEEEE-ECCHHHHHh
Confidence 4688899966 888888775
No 400
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=35.68 E-value=25 Score=21.97 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=15.4
Q ss_pred CCCcceEEEEEecCHHHHHHHH
Q 037126 8 TDRTKGYGFVRFGDENERSRAM 29 (192)
Q Consensus 8 tg~s~g~afV~f~~~~~A~~A~ 29 (192)
.|.+.|||.| |.+.+.|.+.-
T Consensus 61 ~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 61 MQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SSEEEEEEEE-CSCHHHHHHHH
T ss_pred CceEEEEEEE-ECCHHHHHhhC
Confidence 4678899866 88887776653
No 401
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=35.11 E-value=26 Score=21.95 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=14.5
Q ss_pred CCCcceEEEEEecCHHHHHH
Q 037126 8 TDRTKGYGFVRFGDENERSR 27 (192)
Q Consensus 8 tg~s~g~afV~f~~~~~A~~ 27 (192)
.|.+.|||.| |.+.+.|.+
T Consensus 61 ~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 61 KLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp SSEEEEEEEE-CSCHHHHHH
T ss_pred CceEEEEEEE-ECCHHHHHh
Confidence 4678899966 888887764
No 402
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=32.56 E-value=23 Score=22.00 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=13.3
Q ss_pred CCCcceEEEEEecCHHHHHHH
Q 037126 8 TDRTKGYGFVRFGDENERSRA 28 (192)
Q Consensus 8 tg~s~g~afV~f~~~~~A~~A 28 (192)
.|.+.|||.| |.+.+.|.+.
T Consensus 62 ~gks~G~a~I-Yds~e~~kk~ 81 (98)
T 2g1d_A 62 KHEIEGYTKI-YADKPSAMLY 81 (98)
T ss_dssp SSEEEEEEEE-ESHHHHHHHH
T ss_pred CceEEEEEEE-ECCHHHHHhh
Confidence 3578888866 6666666543
No 403
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=26.93 E-value=35 Score=19.17 Aligned_cols=20 Identities=20% Similarity=0.755 Sum_probs=14.3
Q ss_pred CccccCCCCCcceEEEEEecC
Q 037126 1 KVIIDSNTDRTKGYGFVRFGD 21 (192)
Q Consensus 1 kv~~d~~tg~s~g~afV~f~~ 21 (192)
||+.++ -..+.|+++|.|.|
T Consensus 23 rlllnr-Rps~~G~~wiKyED 42 (62)
T 1igq_A 23 RLILNR-RPPAEGYAWLKYED 42 (62)
T ss_dssp EECTTB-CCSSTTEEEEEETT
T ss_pred hhhhcc-CCCcCceEEEEEec
Confidence 345554 24578999999987
No 404
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=24.70 E-value=30 Score=20.10 Aligned_cols=12 Identities=33% Similarity=0.941 Sum_probs=9.1
Q ss_pred CcceEEEEEecC
Q 037126 10 RTKGYGFVRFGD 21 (192)
Q Consensus 10 ~s~g~afV~f~~ 21 (192)
..+|||||+=.+
T Consensus 12 ~~KGfGFI~~~d 23 (74)
T 2k5n_A 12 KDKGFGFIKDEN 23 (74)
T ss_dssp TTTTEEEEEESS
T ss_pred CCCCeEEEecCC
Confidence 468999997654
No 405
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=24.49 E-value=52 Score=22.08 Aligned_cols=19 Identities=11% Similarity=0.464 Sum_probs=14.6
Q ss_pred CCCcceEEEEEecCHHHHHH
Q 037126 8 TDRTKGYGFVRFGDENERSR 27 (192)
Q Consensus 8 tg~s~g~afV~f~~~~~A~~ 27 (192)
.|.+.|||.| |.+.+.|..
T Consensus 64 ggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 64 GGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp SSEEEEEEEE-ESCHHHHHH
T ss_pred CceEEEEEEE-eCCHHHHHh
Confidence 4578899977 888888774
No 406
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=23.84 E-value=30 Score=20.16 Aligned_cols=12 Identities=42% Similarity=0.769 Sum_probs=9.1
Q ss_pred CcceEEEEEecC
Q 037126 10 RTKGYGFVRFGD 21 (192)
Q Consensus 10 ~s~g~afV~f~~ 21 (192)
..+|||||+=.+
T Consensus 10 ~~KGfGFI~~~d 21 (74)
T 2kcm_A 10 AAKKYGFIQGDD 21 (74)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCEEEEecCC
Confidence 468999997654
No 407
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=23.38 E-value=31 Score=19.42 Aligned_cols=11 Identities=45% Similarity=1.035 Sum_probs=8.3
Q ss_pred CcceEEEEEec
Q 037126 10 RTKGYGFVRFG 20 (192)
Q Consensus 10 ~s~g~afV~f~ 20 (192)
..+|||||+=.
T Consensus 11 ~~kGfGFI~~~ 21 (66)
T 1c9o_A 11 NEKGYGFIEVE 21 (66)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCeEEEecC
Confidence 36899999744
No 408
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=23.37 E-value=34 Score=19.39 Aligned_cols=11 Identities=36% Similarity=0.848 Sum_probs=8.3
Q ss_pred CcceEEEEEec
Q 037126 10 RTKGYGFVRFG 20 (192)
Q Consensus 10 ~s~g~afV~f~ 20 (192)
..+|||||+=.
T Consensus 11 ~~kGfGFI~~~ 21 (67)
T 3cam_A 11 DAKGFGFITPD 21 (67)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCeEEEecC
Confidence 46899999743
No 409
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=22.33 E-value=33 Score=19.79 Aligned_cols=11 Identities=45% Similarity=0.908 Sum_probs=8.3
Q ss_pred CcceEEEEEec
Q 037126 10 RTKGYGFVRFG 20 (192)
Q Consensus 10 ~s~g~afV~f~ 20 (192)
..+|||||+=.
T Consensus 11 ~~kGfGFI~~~ 21 (73)
T 3a0j_A 11 AEKGYGFIERE 21 (73)
T ss_dssp TTTTEEEEECT
T ss_pred CCCCEEEEecC
Confidence 36899999744
No 410
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=22.06 E-value=36 Score=19.98 Aligned_cols=11 Identities=36% Similarity=0.824 Sum_probs=8.4
Q ss_pred CcceEEEEEec
Q 037126 10 RTKGYGFVRFG 20 (192)
Q Consensus 10 ~s~g~afV~f~ 20 (192)
..+|||||+=.
T Consensus 18 ~~kGfGFI~~~ 28 (79)
T 1h95_A 18 VRNGYGFINRN 28 (79)
T ss_dssp TTTTEEEEEEG
T ss_pred CCCCcEEEecC
Confidence 36899999743
No 411
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=22.00 E-value=36 Score=20.68 Aligned_cols=10 Identities=30% Similarity=0.873 Sum_probs=7.9
Q ss_pred CcceEEEEEe
Q 037126 10 RTKGYGFVRF 19 (192)
Q Consensus 10 ~s~g~afV~f 19 (192)
..+||+||+-
T Consensus 18 ~~KGfGFI~~ 27 (90)
T 3ulj_A 18 VRMGFGFISM 27 (90)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCeEEeEe
Confidence 4689999964
No 412
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=21.76 E-value=35 Score=19.21 Aligned_cols=11 Identities=45% Similarity=0.933 Sum_probs=8.3
Q ss_pred CcceEEEEEec
Q 037126 10 RTKGYGFVRFG 20 (192)
Q Consensus 10 ~s~g~afV~f~ 20 (192)
..+|||||+=.
T Consensus 10 ~~kGfGFI~~~ 20 (66)
T 1g6p_A 10 SKKGYGFITKD 20 (66)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCEEEEecC
Confidence 36899999644
No 413
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=21.23 E-value=69 Score=22.07 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=18.7
Q ss_pred ce-EEEEEecCHHHHHHHHHHhcC
Q 037126 12 KG-YGFVRFGDENERSRAMIEMNG 34 (192)
Q Consensus 12 ~g-~afV~f~~~~~A~~A~~~l~~ 34 (192)
.| ..++-|.+.++|++..+...|
T Consensus 109 MG~~~l~pFa~k~dAe~Fa~~~GG 132 (175)
T 2hpu_A 109 MGAPEAVPFSSRDEAAAFVLAEGG 132 (175)
T ss_dssp SSCCCEEEESCHHHHHHHHHHTEE
T ss_pred CCCCcccCcCCHHHHHHHHHHcCC
Confidence 35 679999999999999866444
No 414
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=20.74 E-value=68 Score=21.14 Aligned_cols=19 Identities=21% Similarity=0.611 Sum_probs=14.4
Q ss_pred CCCcceEEEEEecCHHHHHH
Q 037126 8 TDRTKGYGFVRFGDENERSR 27 (192)
Q Consensus 8 tg~s~g~afV~f~~~~~A~~ 27 (192)
.|.+.|||.| |.+.+.|..
T Consensus 66 ~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 66 GGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp SSEEEEEEEE-ESSHHHHHH
T ss_pred CceEEEEEEE-eCCHHHHHh
Confidence 4578899876 888887765
No 415
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=20.68 E-value=75 Score=19.14 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=21.8
Q ss_pred cceEEEEEecCHHHHHHHHHHhcCce
Q 037126 11 TKGYGFVRFGDENERSRAMIEMNGVY 36 (192)
Q Consensus 11 s~g~afV~f~~~~~A~~A~~~l~~~~ 36 (192)
..||-||++...++...+++...|..
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV~ 74 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRVR 74 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTEE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCce
Confidence 68999999999999988887666643
Done!