Query 037127
Match_columns 307
No_of_seqs 151 out of 1873
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 08:56:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037127.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037127hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 100.0 4.5E-38 9.7E-43 279.0 23.7 273 14-302 5-280 (342)
2 TIGR02716 C20_methyl_CrtF C-20 100.0 3.8E-37 8.3E-42 279.3 23.8 249 27-305 2-262 (306)
3 PF00891 Methyltransf_2: O-met 100.0 2.1E-37 4.6E-42 271.8 19.0 202 98-306 3-208 (241)
4 PF12847 Methyltransf_18: Meth 99.7 1.8E-15 3.9E-20 116.5 11.9 98 197-297 2-111 (112)
5 COG2226 UbiE Methylase involve 99.6 5.9E-15 1.3E-19 127.4 12.6 105 195-304 50-163 (238)
6 PRK06922 hypothetical protein; 99.6 9.8E-15 2.1E-19 140.9 14.1 145 155-304 377-544 (677)
7 TIGR00740 methyltransferase, p 99.6 8.4E-15 1.8E-19 128.3 12.5 106 195-303 52-167 (239)
8 PRK15451 tRNA cmo(5)U34 methyl 99.6 8.8E-15 1.9E-19 128.8 12.1 106 195-303 55-170 (247)
9 PF01209 Ubie_methyltran: ubiE 99.6 1.1E-14 2.4E-19 126.6 10.9 105 194-303 45-159 (233)
10 PTZ00098 phosphoethanolamine N 99.5 9.8E-14 2.1E-18 123.2 14.0 114 183-302 41-161 (263)
11 PRK14103 trans-aconitate 2-met 99.5 7.9E-14 1.7E-18 123.3 13.3 105 184-297 19-126 (255)
12 PLN02233 ubiquinone biosynthes 99.5 1.4E-13 3.1E-18 122.0 14.2 104 194-302 71-187 (261)
13 PF13847 Methyltransf_31: Meth 99.5 8.8E-14 1.9E-18 113.3 11.9 99 196-299 3-112 (152)
14 PRK11207 tellurite resistance 99.5 1.4E-13 3.1E-18 117.0 13.1 112 184-302 20-139 (197)
15 PRK01683 trans-aconitate 2-met 99.5 2.5E-13 5.3E-18 120.3 14.1 107 183-296 20-129 (258)
16 PF08241 Methyltransf_11: Meth 99.5 1.4E-13 3E-18 102.2 10.2 89 201-295 1-95 (95)
17 PLN02244 tocopherol O-methyltr 99.5 3.8E-13 8.2E-18 123.7 14.4 100 195-300 117-226 (340)
18 TIGR02752 MenG_heptapren 2-hep 99.5 8.4E-13 1.8E-17 114.9 13.2 110 185-301 36-155 (231)
19 TIGR00477 tehB tellurite resis 99.5 8.6E-13 1.9E-17 112.0 12.7 111 184-301 20-137 (195)
20 TIGR03587 Pse_Me-ase pseudamin 99.5 7.5E-13 1.6E-17 113.0 12.0 103 195-302 42-147 (204)
21 smart00828 PKS_MT Methyltransf 99.4 9.5E-13 2E-17 114.1 11.6 98 198-300 1-107 (224)
22 PF13649 Methyltransf_25: Meth 99.4 6.4E-13 1.4E-17 100.6 9.1 89 200-291 1-101 (101)
23 smart00138 MeTrc Methyltransfe 99.4 1.6E-12 3.4E-17 115.4 12.8 100 195-297 98-242 (264)
24 PLN02336 phosphoethanolamine N 99.4 2.4E-12 5.2E-17 123.8 13.8 111 184-302 256-374 (475)
25 PF08242 Methyltransf_12: Meth 99.4 5E-14 1.1E-18 106.2 1.5 88 201-293 1-99 (99)
26 PLN02490 MPBQ/MSBQ methyltrans 99.4 2.4E-12 5.3E-17 117.3 12.7 101 196-301 113-219 (340)
27 COG4106 Tam Trans-aconitate me 99.4 1.9E-12 4.2E-17 107.9 10.3 113 177-297 14-129 (257)
28 PRK15068 tRNA mo(5)U34 methylt 99.4 4.3E-12 9.2E-17 115.7 13.2 102 196-303 122-232 (322)
29 PRK11036 putative S-adenosyl-L 99.4 3.4E-12 7.3E-17 112.9 12.1 98 195-299 43-151 (255)
30 KOG1540 Ubiquinone biosynthesi 99.4 4.5E-12 9.7E-17 108.2 11.9 103 195-302 99-219 (296)
31 TIGR00452 methyltransferase, p 99.4 6.2E-12 1.3E-16 113.7 13.3 110 185-302 112-230 (314)
32 PRK08317 hypothetical protein; 99.4 9E-12 2E-16 108.4 13.6 107 186-299 11-126 (241)
33 PLN03075 nicotianamine synthas 99.4 4.6E-12 1E-16 112.7 11.9 98 195-296 122-232 (296)
34 TIGR02072 BioC biotin biosynth 99.4 7.4E-12 1.6E-16 109.0 12.8 99 196-299 34-137 (240)
35 PF02353 CMAS: Mycolic acid cy 99.4 8.3E-12 1.8E-16 111.0 12.4 113 184-302 52-171 (273)
36 PRK10258 biotin biosynthesis p 99.4 1.4E-11 3.1E-16 108.6 13.7 108 183-299 31-142 (251)
37 COG2230 Cfa Cyclopropane fatty 99.4 1.4E-11 3E-16 108.5 13.3 116 183-304 61-183 (283)
38 PRK12335 tellurite resistance 99.4 1.1E-11 2.3E-16 111.6 13.0 101 196-301 120-227 (287)
39 PLN02396 hexaprenyldihydroxybe 99.4 4.1E-12 9E-17 115.3 10.4 96 196-298 131-236 (322)
40 PRK06202 hypothetical protein; 99.3 2.2E-11 4.8E-16 106.2 14.2 102 195-301 59-170 (232)
41 PRK00216 ubiE ubiquinone/menaq 99.3 3.7E-11 8.1E-16 104.7 15.4 110 186-302 43-163 (239)
42 PRK15001 SAM-dependent 23S rib 99.3 1.6E-11 3.6E-16 113.4 13.1 109 184-297 218-340 (378)
43 PLN02336 phosphoethanolamine N 99.3 1.6E-11 3.4E-16 118.2 13.5 113 184-303 27-148 (475)
44 PF05401 NodS: Nodulation prot 99.3 1E-11 2.2E-16 103.1 10.2 100 194-298 41-147 (201)
45 KOG1270 Methyltransferases [Co 99.3 4.7E-12 1E-16 108.7 8.2 96 197-299 90-197 (282)
46 TIGR02021 BchM-ChlM magnesium 99.3 4.5E-11 9.6E-16 103.3 14.1 90 195-286 54-150 (219)
47 PRK11873 arsM arsenite S-adeno 99.3 2.6E-11 5.7E-16 108.2 12.7 104 194-302 75-188 (272)
48 PRK08287 cobalt-precorrin-6Y C 99.3 2.4E-11 5.2E-16 102.4 11.8 97 194-298 29-132 (187)
49 COG2227 UbiG 2-polyprenyl-3-me 99.3 8.3E-12 1.8E-16 106.4 8.0 98 196-300 59-164 (243)
50 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 6.4E-11 1.4E-15 102.1 13.0 103 195-302 38-148 (223)
51 PRK05785 hypothetical protein; 99.3 3.4E-11 7.3E-16 104.5 11.2 95 196-301 51-149 (226)
52 TIGR02469 CbiT precorrin-6Y C5 99.3 7.2E-11 1.6E-15 92.1 11.9 95 194-296 17-121 (124)
53 PF05175 MTS: Methyltransferas 99.3 6.2E-11 1.3E-15 98.4 12.1 99 196-297 31-140 (170)
54 PF03848 TehB: Tellurite resis 99.3 6.4E-11 1.4E-15 99.2 12.1 109 184-299 20-135 (192)
55 PRK11705 cyclopropane fatty ac 99.3 9.5E-11 2.1E-15 109.3 14.4 112 185-302 158-272 (383)
56 TIGR03840 TMPT_Se_Te thiopurin 99.2 1.7E-10 3.7E-15 99.1 13.9 102 195-301 33-156 (213)
57 PRK09489 rsmC 16S ribosomal RN 99.2 1E-10 2.2E-15 107.4 13.2 100 197-299 197-305 (342)
58 PRK00107 gidB 16S rRNA methylt 99.2 1.4E-10 3E-15 97.5 12.7 95 196-299 45-147 (187)
59 TIGR00138 gidB 16S rRNA methyl 99.2 4.5E-11 9.8E-16 100.1 9.6 92 197-297 43-142 (181)
60 TIGR03438 probable methyltrans 99.2 8.7E-11 1.9E-15 106.3 11.5 97 196-295 63-175 (301)
61 PF13489 Methyltransf_23: Meth 99.2 4.9E-11 1.1E-15 97.3 8.9 95 194-300 20-118 (161)
62 PRK07580 Mg-protoporphyrin IX 99.2 2.6E-10 5.6E-15 99.0 12.2 90 195-286 62-158 (230)
63 TIGR00537 hemK_rel_arch HemK-r 99.2 3.1E-10 6.6E-15 95.0 11.7 101 196-301 19-144 (179)
64 PRK13255 thiopurine S-methyltr 99.2 6.3E-10 1.4E-14 95.9 13.6 102 195-301 36-159 (218)
65 PRK00121 trmB tRNA (guanine-N( 99.2 1.6E-10 3.5E-15 98.6 9.3 99 196-297 40-156 (202)
66 PRK13944 protein-L-isoaspartat 99.1 8.8E-10 1.9E-14 94.3 12.1 98 186-296 64-172 (205)
67 TIGR00091 tRNA (guanine-N(7)-) 99.1 5.1E-10 1.1E-14 94.9 10.1 98 196-297 16-132 (194)
68 COG2813 RsmC 16S RNA G1207 met 99.1 1.2E-09 2.6E-14 96.6 12.5 110 184-298 148-267 (300)
69 PRK04266 fibrillarin; Provisio 99.1 1.2E-09 2.5E-14 94.7 12.0 94 194-295 70-174 (226)
70 TIGR03534 RF_mod_PrmC protein- 99.1 1.7E-09 3.6E-14 95.2 12.7 98 196-296 87-216 (251)
71 TIGR03533 L3_gln_methyl protei 99.1 1.4E-09 2.9E-14 97.7 11.7 99 196-298 121-251 (284)
72 PRK13942 protein-L-isoaspartat 99.0 2.8E-09 6.1E-14 91.6 12.3 100 184-296 66-175 (212)
73 PRK11088 rrmA 23S rRNA methylt 99.0 1.5E-09 3.2E-14 97.0 10.7 91 196-298 85-182 (272)
74 PRK14121 tRNA (guanine-N(7)-)- 99.0 2.7E-09 5.8E-14 98.5 12.3 106 186-297 114-235 (390)
75 PRK11805 N5-glutamine S-adenos 99.0 2.1E-09 4.6E-14 97.4 11.4 95 198-295 135-261 (307)
76 PRK04457 spermidine synthase; 99.0 1.3E-09 2.8E-14 96.7 9.6 99 195-296 65-176 (262)
77 TIGR00080 pimt protein-L-isoas 99.0 4.1E-09 8.9E-14 90.8 12.5 99 185-296 68-176 (215)
78 TIGR00536 hemK_fam HemK family 99.0 4.2E-09 9.2E-14 94.6 13.0 97 198-298 116-244 (284)
79 PRK07402 precorrin-6B methylas 99.0 4.5E-09 9.7E-14 89.3 12.0 104 186-300 32-145 (196)
80 PF08003 Methyltransf_9: Prote 99.0 5.1E-09 1.1E-13 92.6 12.2 112 184-303 105-225 (315)
81 PLN02585 magnesium protoporphy 99.0 2.7E-09 6E-14 96.7 10.7 86 196-283 144-240 (315)
82 PRK11188 rrmJ 23S rRNA methylt 99.0 6.2E-09 1.3E-13 89.3 11.7 97 194-298 49-166 (209)
83 PF13659 Methyltransf_26: Meth 99.0 2.5E-09 5.3E-14 82.8 8.4 96 198-297 2-115 (117)
84 cd02440 AdoMet_MTases S-adenos 99.0 6.2E-09 1.3E-13 77.3 10.2 93 199-296 1-103 (107)
85 PRK09328 N5-glutamine S-adenos 99.0 9.7E-09 2.1E-13 91.7 13.0 98 195-295 107-236 (275)
86 COG4123 Predicted O-methyltran 98.9 4.6E-09 1E-13 91.0 9.4 100 195-297 43-170 (248)
87 PRK05134 bifunctional 3-demeth 98.9 1.2E-08 2.6E-13 88.9 12.1 97 195-298 47-152 (233)
88 COG2242 CobL Precorrin-6B meth 98.9 1.8E-08 3.8E-13 83.2 11.9 97 194-299 32-137 (187)
89 PRK00377 cbiT cobalt-precorrin 98.9 1.5E-08 3.2E-13 86.2 11.0 94 194-295 38-143 (198)
90 PF06080 DUF938: Protein of un 98.9 1.9E-08 4.1E-13 84.6 11.2 101 199-302 28-146 (204)
91 TIGR01983 UbiG ubiquinone bios 98.9 1.2E-08 2.6E-13 88.3 10.4 96 196-298 45-150 (224)
92 PRK14968 putative methyltransf 98.9 2.5E-08 5.4E-13 83.7 12.0 100 195-299 22-150 (188)
93 TIGR02081 metW methionine bios 98.9 1E-08 2.3E-13 86.8 9.3 86 196-286 13-104 (194)
94 TIGR00406 prmA ribosomal prote 98.9 1.7E-08 3.7E-13 90.8 11.0 96 195-299 158-261 (288)
95 PRK14966 unknown domain/N5-glu 98.9 2.4E-08 5.2E-13 92.9 12.1 99 196-298 251-381 (423)
96 PF12147 Methyltransf_20: Puta 98.9 1E-07 2.2E-12 83.7 14.8 105 195-302 134-254 (311)
97 PF07021 MetW: Methionine bios 98.9 1.2E-08 2.6E-13 84.7 8.5 86 194-284 11-102 (193)
98 PRK14967 putative methyltransf 98.9 3.4E-08 7.4E-13 85.6 11.8 102 194-299 34-161 (223)
99 PRK13256 thiopurine S-methyltr 98.9 7E-08 1.5E-12 83.2 13.5 102 195-301 42-167 (226)
100 PRK00517 prmA ribosomal protei 98.8 3.5E-08 7.6E-13 87.0 11.7 92 195-300 118-216 (250)
101 KOG4300 Predicted methyltransf 98.8 2.6E-08 5.6E-13 82.9 9.9 129 167-303 49-188 (252)
102 PF01739 CheR: CheR methyltran 98.8 1.5E-08 3.3E-13 85.7 8.9 98 196-296 31-174 (196)
103 PRK00312 pcm protein-L-isoaspa 98.8 5.6E-08 1.2E-12 83.5 12.4 92 194-298 76-176 (212)
104 PF08100 Dimerisation: Dimeris 98.8 1.5E-09 3.2E-14 70.6 1.9 49 30-78 1-51 (51)
105 PRK00811 spermidine synthase; 98.8 2.6E-08 5.6E-13 89.4 10.5 99 195-296 75-190 (283)
106 PF05891 Methyltransf_PK: AdoM 98.8 1.6E-08 3.4E-13 85.6 8.5 104 196-303 55-167 (218)
107 KOG2361 Predicted methyltransf 98.8 2.4E-08 5.2E-13 85.0 9.1 101 198-301 73-187 (264)
108 KOG2899 Predicted methyltransf 98.8 3.3E-08 7.1E-13 84.1 9.4 111 184-298 46-209 (288)
109 PRK01544 bifunctional N5-gluta 98.8 3.6E-08 7.9E-13 95.2 10.9 96 197-295 139-267 (506)
110 TIGR03704 PrmC_rel_meth putati 98.8 8.9E-08 1.9E-12 84.4 12.0 97 197-296 87-215 (251)
111 PF05724 TPMT: Thiopurine S-me 98.8 6.6E-08 1.4E-12 83.3 10.5 103 194-301 35-159 (218)
112 TIGR00438 rrmJ cell division p 98.7 7.6E-08 1.7E-12 81.1 10.1 95 194-296 30-145 (188)
113 PHA03411 putative methyltransf 98.7 1E-07 2.2E-12 83.9 11.0 97 197-296 65-182 (279)
114 PTZ00146 fibrillarin; Provisio 98.7 1.9E-07 4E-12 83.2 12.2 95 194-296 130-236 (293)
115 PLN02366 spermidine synthase 98.7 1E-07 2.2E-12 86.2 10.8 99 195-296 90-205 (308)
116 PRK13943 protein-L-isoaspartat 98.7 1.6E-07 3.5E-12 85.4 11.8 99 186-297 72-180 (322)
117 KOG1271 Methyltransferases [Ge 98.7 7.7E-08 1.7E-12 78.5 8.3 101 197-300 68-184 (227)
118 PRK10611 chemotaxis methyltran 98.7 9.7E-07 2.1E-11 78.9 15.9 97 197-296 116-261 (287)
119 KOG3010 Methyltransferase [Gen 98.7 6.6E-08 1.4E-12 82.4 7.9 98 195-299 32-139 (261)
120 PRK01581 speE spermidine synth 98.7 1.4E-07 3E-12 86.2 10.4 100 195-297 149-268 (374)
121 TIGR00417 speE spermidine synt 98.7 1.4E-07 3.1E-12 84.1 10.2 99 195-296 71-185 (270)
122 smart00650 rADc Ribosomal RNA 98.7 1.8E-07 3.8E-12 77.5 9.7 90 184-282 3-99 (169)
123 COG2890 HemK Methylase of poly 98.6 2.9E-07 6.3E-12 82.3 10.7 97 199-299 113-239 (280)
124 PLN02781 Probable caffeoyl-CoA 98.6 3.8E-07 8.2E-12 79.6 11.1 96 194-297 66-178 (234)
125 TIGR01177 conserved hypothetic 98.6 5.8E-07 1.2E-11 82.5 12.6 101 194-299 180-296 (329)
126 PF01135 PCMT: Protein-L-isoas 98.6 2.9E-07 6.2E-12 78.7 9.0 100 184-296 62-171 (209)
127 PRK10901 16S rRNA methyltransf 98.6 3.3E-07 7.2E-12 87.0 10.3 102 194-298 242-373 (427)
128 PF03291 Pox_MCEL: mRNA cappin 98.6 6.4E-07 1.4E-11 81.8 11.5 98 196-297 62-186 (331)
129 COG2518 Pcm Protein-L-isoaspar 98.6 1.2E-06 2.5E-11 74.1 11.7 99 185-298 63-170 (209)
130 COG1352 CheR Methylase of chem 98.5 1.2E-06 2.6E-11 77.4 12.1 98 196-296 96-240 (268)
131 PRK14902 16S rRNA methyltransf 98.5 9.7E-07 2.1E-11 84.3 12.3 102 194-298 248-380 (444)
132 PRK14904 16S rRNA methyltransf 98.5 1E-06 2.2E-11 84.2 12.2 104 194-300 248-380 (445)
133 COG2264 PrmA Ribosomal protein 98.5 3.7E-07 8E-12 81.4 8.4 95 194-297 160-263 (300)
134 TIGR00563 rsmB ribosomal RNA s 98.5 8.1E-07 1.8E-11 84.4 11.2 105 194-301 236-372 (426)
135 PRK03612 spermidine synthase; 98.5 5.5E-07 1.2E-11 87.5 10.1 98 195-296 296-414 (521)
136 PF02390 Methyltransf_4: Putat 98.5 1.1E-06 2.4E-11 74.5 10.6 95 199-297 20-133 (195)
137 PHA03412 putative methyltransf 98.5 9.7E-07 2.1E-11 76.1 10.1 90 197-286 50-155 (241)
138 PLN02232 ubiquinone biosynthes 98.5 3.9E-07 8.5E-12 74.8 7.5 74 224-302 1-86 (160)
139 PF10294 Methyltransf_16: Puta 98.5 1.5E-06 3.3E-11 72.2 10.3 103 194-301 43-160 (173)
140 PF06325 PrmA: Ribosomal prote 98.5 7.2E-07 1.6E-11 80.1 8.7 93 195-299 160-261 (295)
141 COG2519 GCD14 tRNA(1-methylade 98.4 3.3E-06 7E-11 73.0 11.9 106 184-301 84-199 (256)
142 TIGR00446 nop2p NOL1/NOP2/sun 98.4 3E-06 6.4E-11 75.4 11.4 104 194-300 69-202 (264)
143 PLN02672 methionine S-methyltr 98.4 1.6E-06 3.5E-11 89.5 10.5 66 197-262 119-210 (1082)
144 PF08123 DOT1: Histone methyla 98.4 2.2E-06 4.8E-11 73.0 9.7 112 184-303 32-164 (205)
145 PRK14901 16S rRNA methyltransf 98.4 3.1E-06 6.6E-11 80.6 11.7 104 194-300 250-387 (434)
146 PRK14903 16S rRNA methyltransf 98.4 3.2E-06 7E-11 80.3 11.7 104 194-300 235-369 (431)
147 PRK14896 ksgA 16S ribosomal RN 98.4 2.7E-06 5.9E-11 75.4 10.6 83 183-270 18-105 (258)
148 TIGR00755 ksgA dimethyladenosi 98.4 2.6E-06 5.5E-11 75.3 10.0 92 183-282 18-116 (253)
149 PF01596 Methyltransf_3: O-met 98.4 8.9E-07 1.9E-11 75.5 6.7 98 194-300 43-157 (205)
150 KOG1975 mRNA cap methyltransfe 98.4 2.5E-06 5.4E-11 75.7 9.5 96 195-294 116-234 (389)
151 COG3963 Phospholipid N-methylt 98.3 7.3E-06 1.6E-10 66.2 10.9 115 180-299 34-158 (194)
152 PRK00274 ksgA 16S ribosomal RN 98.3 2.3E-06 5E-11 76.4 9.1 89 184-281 32-126 (272)
153 PF04672 Methyltransf_19: S-ad 98.3 8.1E-06 1.8E-10 71.6 12.0 103 196-301 68-194 (267)
154 KOG1541 Predicted protein carb 98.3 2.4E-06 5.1E-11 72.0 8.1 95 196-296 50-159 (270)
155 PF05185 PRMT5: PRMT5 arginine 98.3 4.6E-06 9.9E-11 79.3 10.3 131 156-294 151-294 (448)
156 COG4976 Predicted methyltransf 98.3 1E-06 2.2E-11 74.7 4.9 110 185-303 116-231 (287)
157 PRK04148 hypothetical protein; 98.3 1.6E-05 3.4E-10 62.7 10.8 81 196-285 16-102 (134)
158 KOG1661 Protein-L-isoaspartate 98.2 4.2E-06 9.1E-11 70.0 7.8 98 187-295 73-191 (237)
159 PF05148 Methyltransf_8: Hypot 98.2 1.2E-05 2.7E-10 67.6 10.3 120 161-299 34-160 (219)
160 PTZ00338 dimethyladenosine tra 98.2 7.7E-06 1.7E-10 73.7 9.8 89 184-277 26-122 (294)
161 PLN02476 O-methyltransferase 98.2 1.2E-05 2.6E-10 71.4 10.9 99 194-300 116-231 (278)
162 COG4122 Predicted O-methyltran 98.2 9.6E-06 2.1E-10 69.4 9.3 100 194-302 57-170 (219)
163 PLN02823 spermine synthase 98.2 9.4E-06 2E-10 74.3 9.9 98 195-296 102-219 (336)
164 COG2263 Predicted RNA methylas 98.2 8.5E-06 1.8E-10 67.3 8.5 68 195-263 44-116 (198)
165 PF09243 Rsm22: Mitochondrial 98.2 2.4E-05 5.2E-10 69.9 12.0 103 195-302 32-144 (274)
166 COG0421 SpeE Spermidine syntha 98.2 1.4E-05 3E-10 71.3 9.7 98 195-296 75-189 (282)
167 PF05219 DREV: DREV methyltran 98.2 1.6E-05 3.4E-10 69.2 9.6 91 196-295 94-186 (265)
168 PF01564 Spermine_synth: Sperm 98.1 7.1E-06 1.5E-10 72.1 7.7 100 195-297 75-191 (246)
169 COG0220 Predicted S-adenosylme 98.1 1.5E-05 3.3E-10 68.8 9.5 96 198-297 50-164 (227)
170 PRK10909 rsmD 16S rRNA m(2)G96 98.1 1.1E-05 2.3E-10 68.5 8.2 97 196-300 53-161 (199)
171 PRK13168 rumA 23S rRNA m(5)U19 98.1 2.2E-05 4.8E-10 75.0 11.3 91 194-295 295-398 (443)
172 KOG1500 Protein arginine N-met 98.1 2.4E-05 5.2E-10 69.9 10.3 94 197-294 178-279 (517)
173 PRK00536 speE spermidine synth 98.1 2.4E-05 5.3E-10 69.0 10.3 89 195-296 71-170 (262)
174 PRK11783 rlmL 23S rRNA m(2)G24 98.1 1.4E-05 3E-10 80.5 9.0 97 196-296 538-655 (702)
175 PF08704 GCD14: tRNA methyltra 98.1 3.5E-05 7.6E-10 67.4 10.1 105 184-300 30-149 (247)
176 PLN02589 caffeoyl-CoA O-methyl 98.1 2.6E-05 5.5E-10 68.4 9.3 98 194-300 77-192 (247)
177 TIGR03439 methyl_EasF probable 98.0 2.5E-05 5.4E-10 71.0 9.3 97 196-295 76-195 (319)
178 PRK15128 23S rRNA m(5)C1962 me 98.0 4.1E-05 8.8E-10 71.9 10.4 100 195-298 219-340 (396)
179 KOG1499 Protein arginine N-met 98.0 2.1E-05 4.5E-10 71.0 7.8 96 195-294 59-164 (346)
180 PRK03522 rumB 23S rRNA methylu 98.0 5.6E-05 1.2E-09 69.0 10.3 65 196-262 173-247 (315)
181 KOG3045 Predicted RNA methylas 97.9 8.6E-05 1.9E-09 64.2 10.1 119 159-298 140-265 (325)
182 PRK00050 16S rRNA m(4)C1402 me 97.9 2.6E-05 5.6E-10 70.1 7.3 78 183-262 8-97 (296)
183 PF03141 Methyltransf_29: Puta 97.9 6.5E-06 1.4E-10 77.5 2.9 99 195-301 116-223 (506)
184 PRK11727 23S rRNA mA1618 methy 97.9 6.3E-05 1.4E-09 68.4 8.9 75 196-270 114-204 (321)
185 PRK01544 bifunctional N5-gluta 97.8 8.3E-05 1.8E-09 72.1 9.2 98 196-297 347-462 (506)
186 TIGR00095 RNA methyltransferas 97.8 7.9E-05 1.7E-09 62.8 7.7 97 196-300 49-161 (189)
187 KOG0820 Ribosomal RNA adenine 97.8 0.00011 2.3E-09 64.1 8.3 75 183-261 47-129 (315)
188 TIGR00478 tly hemolysin TlyA f 97.8 0.00028 6.1E-09 61.1 10.8 98 184-297 64-172 (228)
189 TIGR00479 rumA 23S rRNA (uraci 97.7 9.5E-05 2.1E-09 70.4 7.6 92 194-295 290-394 (431)
190 TIGR02085 meth_trns_rumB 23S r 97.7 0.0002 4.3E-09 66.9 8.8 64 197-262 234-307 (374)
191 KOG2904 Predicted methyltransf 97.7 0.00023 5E-09 62.1 8.3 68 195-262 147-229 (328)
192 KOG1331 Predicted methyltransf 97.7 8.1E-05 1.8E-09 65.4 5.6 96 196-299 45-145 (293)
193 KOG3115 Methyltransferase-like 97.6 0.00016 3.4E-09 60.4 5.9 100 197-299 61-185 (249)
194 PF02527 GidB: rRNA small subu 97.5 0.00032 6.9E-09 58.8 7.3 89 199-296 51-147 (184)
195 COG0030 KsgA Dimethyladenosine 97.5 0.00077 1.7E-08 59.2 9.7 83 183-270 19-109 (259)
196 PF09339 HTH_IclR: IclR helix- 97.5 8.6E-05 1.9E-09 48.7 2.4 46 38-86 6-51 (52)
197 COG5459 Predicted rRNA methyla 97.4 0.00012 2.7E-09 65.8 3.8 103 196-301 113-229 (484)
198 PF02475 Met_10: Met-10+ like- 97.4 0.00034 7.4E-09 59.3 6.3 91 194-293 99-198 (200)
199 KOG2940 Predicted methyltransf 97.4 0.00026 5.6E-09 60.3 5.4 94 195-294 71-171 (325)
200 COG4262 Predicted spermidine s 97.4 0.00063 1.4E-08 61.7 7.5 94 195-297 288-407 (508)
201 PF09445 Methyltransf_15: RNA 97.3 0.00017 3.8E-09 58.9 3.2 64 198-263 1-77 (163)
202 PF01728 FtsJ: FtsJ-like methy 97.3 0.00031 6.7E-09 58.6 4.8 105 184-296 10-138 (181)
203 KOG3191 Predicted N6-DNA-methy 97.3 0.0018 4E-08 53.3 8.9 101 197-300 44-171 (209)
204 PRK04338 N(2),N(2)-dimethylgua 97.3 0.0011 2.3E-08 62.0 8.6 91 197-296 58-157 (382)
205 PF13679 Methyltransf_32: Meth 97.3 0.0011 2.5E-08 53.0 7.6 85 194-282 23-122 (141)
206 PF11968 DUF3321: Putative met 97.3 0.00054 1.2E-08 58.1 5.9 88 197-299 52-151 (219)
207 PF00398 RrnaAD: Ribosomal RNA 97.3 0.0013 2.8E-08 58.4 8.5 96 182-285 18-122 (262)
208 COG0293 FtsJ 23S rRNA methylas 97.3 0.0023 4.9E-08 54.2 9.2 106 184-298 34-160 (205)
209 PF03059 NAS: Nicotianamine sy 97.2 0.0014 3E-08 58.2 8.2 97 196-296 120-229 (276)
210 COG0357 GidB Predicted S-adeno 97.2 0.0021 4.6E-08 54.9 8.6 69 197-265 68-145 (215)
211 TIGR01444 fkbM_fam methyltrans 97.2 0.0014 3E-08 52.2 7.0 53 199-251 1-59 (143)
212 PF11312 DUF3115: Protein of u 97.2 0.0046 1E-07 55.4 10.5 99 197-298 87-243 (315)
213 PRK11760 putative 23S rRNA C24 97.1 0.0042 9.2E-08 56.5 10.4 95 194-300 209-307 (357)
214 KOG3420 Predicted RNA methylas 97.1 0.00096 2.1E-08 52.8 5.1 69 195-265 47-124 (185)
215 COG4076 Predicted RNA methylas 97.1 0.0013 2.8E-08 54.4 6.0 92 198-294 34-132 (252)
216 COG3897 Predicted methyltransf 97.1 0.0047 1E-07 51.5 9.3 102 194-301 77-183 (218)
217 COG0500 SmtA SAM-dependent met 97.1 0.0086 1.9E-07 46.9 10.6 96 200-302 52-160 (257)
218 PF04816 DUF633: Family of unk 97.0 0.0021 4.6E-08 54.8 6.8 82 200-285 1-92 (205)
219 TIGR00006 S-adenosyl-methyltra 97.0 0.0045 9.8E-08 55.8 8.8 67 183-251 9-80 (305)
220 smart00346 HTH_ICLR helix_turn 96.9 0.00089 1.9E-08 49.1 3.4 58 38-107 8-65 (91)
221 PRK05031 tRNA (uracil-5-)-meth 96.9 0.0012 2.5E-08 61.5 4.5 52 198-251 208-265 (362)
222 smart00550 Zalpha Z-DNA-bindin 96.8 0.0017 3.7E-08 45.1 3.9 59 36-105 7-66 (68)
223 PF02384 N6_Mtase: N-6 DNA Met 96.8 0.0074 1.6E-07 54.8 9.1 102 194-298 44-184 (311)
224 PF12840 HTH_20: Helix-turn-he 96.8 0.00074 1.6E-08 45.8 1.8 55 29-87 4-58 (61)
225 PRK11933 yebU rRNA (cytosine-C 96.8 0.015 3.1E-07 55.9 11.1 101 194-297 111-242 (470)
226 PF01170 UPF0020: Putative RNA 96.8 0.0076 1.7E-07 50.3 8.2 101 184-286 18-143 (179)
227 TIGR02143 trmA_only tRNA (urac 96.8 0.0044 9.6E-08 57.4 7.3 52 198-251 199-256 (353)
228 PRK10141 DNA-binding transcrip 96.7 0.0034 7.3E-08 48.5 5.0 69 27-106 8-76 (117)
229 KOG1269 SAM-dependent methyltr 96.6 0.0022 4.8E-08 59.3 4.4 102 195-302 109-220 (364)
230 COG1414 IclR Transcriptional r 96.6 0.0017 3.6E-08 57.1 3.4 59 38-108 7-65 (246)
231 PF07091 FmrO: Ribosomal RNA m 96.6 0.0087 1.9E-07 52.1 7.6 103 194-301 103-212 (251)
232 PRK11569 transcriptional repre 96.6 0.002 4.4E-08 57.5 3.6 59 38-108 31-89 (274)
233 PRK10163 DNA-binding transcrip 96.5 0.0024 5.1E-08 57.0 3.7 59 38-108 28-86 (271)
234 TIGR02431 pcaR_pcaU beta-ketoa 96.5 0.0025 5.3E-08 56.1 3.6 58 38-109 12-69 (248)
235 PF02082 Rrf2: Transcriptional 96.5 0.0049 1.1E-07 44.6 4.5 49 49-108 24-72 (83)
236 PRK11783 rlmL 23S rRNA m(2)G24 96.5 0.035 7.5E-07 56.3 12.0 116 182-298 177-348 (702)
237 KOG4589 Cell division protein 96.4 0.016 3.5E-07 48.0 7.5 99 188-295 62-182 (232)
238 PF03602 Cons_hypoth95: Conser 96.4 0.017 3.7E-07 48.4 7.9 98 196-301 42-156 (183)
239 PRK15090 DNA-binding transcrip 96.3 0.0037 7.9E-08 55.3 3.7 57 39-108 18-74 (257)
240 PRK09834 DNA-binding transcrip 96.3 0.0035 7.6E-08 55.6 3.6 62 38-111 14-75 (263)
241 COG4301 Uncharacterized conser 96.3 0.03 6.5E-07 48.5 8.8 98 195-295 77-191 (321)
242 COG2521 Predicted archaeal met 96.3 0.0076 1.7E-07 51.7 5.1 93 194-294 132-242 (287)
243 KOG3201 Uncharacterized conser 96.3 0.003 6.6E-08 51.0 2.5 101 196-301 29-144 (201)
244 PF01022 HTH_5: Bacterial regu 96.2 0.0023 5E-08 40.9 1.5 44 37-85 4-47 (47)
245 cd00092 HTH_CRP helix_turn_hel 96.2 0.027 5.8E-07 38.4 6.8 44 49-105 24-67 (67)
246 PF13463 HTH_27: Winged helix 96.2 0.0059 1.3E-07 42.0 3.3 53 48-107 16-68 (68)
247 KOG1663 O-methyltransferase [S 96.2 0.025 5.4E-07 48.5 7.7 97 194-299 71-184 (237)
248 PF01795 Methyltransf_5: MraW 96.1 0.016 3.5E-07 52.3 6.7 67 183-251 9-80 (310)
249 TIGR00027 mthyl_TIGR00027 meth 96.1 0.068 1.5E-06 47.4 10.5 102 195-301 80-200 (260)
250 PF07757 AdoMet_MTase: Predict 96.1 0.0079 1.7E-07 45.2 3.7 32 195-228 57-88 (112)
251 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.0 0.01 2.2E-07 52.3 4.9 100 195-299 55-201 (256)
252 PF13578 Methyltransf_24: Meth 96.0 0.0049 1.1E-07 46.5 2.3 91 201-297 1-105 (106)
253 smart00419 HTH_CRP helix_turn_ 95.9 0.018 3.8E-07 36.5 4.4 35 49-86 7-41 (48)
254 TIGR02987 met_A_Alw26 type II 95.9 0.053 1.2E-06 53.1 9.8 67 196-262 31-119 (524)
255 PRK10857 DNA-binding transcrip 95.9 0.018 3.8E-07 47.4 5.4 49 49-108 24-72 (164)
256 TIGR00308 TRM1 tRNA(guanine-26 95.8 0.062 1.4E-06 50.1 9.5 91 198-297 46-147 (374)
257 PF14947 HTH_45: Winged helix- 95.8 0.0092 2E-07 42.5 3.1 49 49-111 18-66 (77)
258 COG2520 Predicted methyltransf 95.7 0.045 9.8E-07 50.1 7.9 98 196-303 188-295 (341)
259 KOG2915 tRNA(1-methyladenosine 95.7 0.12 2.6E-06 45.5 10.0 106 184-300 95-213 (314)
260 PF01978 TrmB: Sugar-specific 95.7 0.0029 6.3E-08 43.8 0.1 46 38-87 11-56 (68)
261 KOG1709 Guanidinoacetate methy 95.7 0.21 4.5E-06 42.6 10.9 99 195-298 100-207 (271)
262 COG1092 Predicted SAM-dependen 95.6 0.035 7.6E-07 51.9 7.0 98 196-298 217-337 (393)
263 PF13601 HTH_34: Winged helix 95.6 0.0043 9.3E-08 44.6 0.7 68 36-110 1-68 (80)
264 PF13412 HTH_24: Winged helix- 95.6 0.0088 1.9E-07 38.2 2.0 44 37-84 5-48 (48)
265 TIGR02337 HpaR homoprotocatech 95.4 0.042 9.2E-07 42.3 5.8 69 37-113 30-98 (118)
266 TIGR02010 IscR iron-sulfur clu 95.3 0.031 6.6E-07 44.4 4.6 49 49-108 24-72 (135)
267 COG0116 Predicted N6-adenine-s 95.2 0.26 5.6E-06 45.7 11.1 109 183-296 180-343 (381)
268 KOG2793 Putative N2,N2-dimethy 95.2 0.16 3.4E-06 44.5 9.2 98 196-299 86-201 (248)
269 PRK03902 manganese transport t 95.2 0.03 6.6E-07 44.7 4.4 51 48-111 20-70 (142)
270 PF01269 Fibrillarin: Fibrilla 95.1 0.24 5.2E-06 42.5 9.7 95 194-296 71-177 (229)
271 COG2384 Predicted SAM-dependen 95.1 0.062 1.3E-06 45.8 6.2 68 196-263 16-93 (226)
272 PF08461 HTH_12: Ribonuclease 95.0 0.022 4.8E-07 39.2 2.8 59 40-108 3-63 (66)
273 COG4798 Predicted methyltransf 95.0 0.11 2.4E-06 43.4 7.3 106 193-302 45-171 (238)
274 PHA00738 putative HTH transcri 95.0 0.024 5.2E-07 42.6 3.1 62 36-108 13-74 (108)
275 COG1959 Predicted transcriptio 95.0 0.037 8E-07 44.8 4.5 51 49-110 24-74 (150)
276 COG1041 Predicted DNA modifica 94.9 0.35 7.7E-06 44.2 10.9 100 194-298 195-311 (347)
277 PF04703 FaeA: FaeA-like prote 94.9 0.017 3.7E-07 39.2 1.8 45 40-87 5-49 (62)
278 PRK03573 transcriptional regul 94.9 0.16 3.4E-06 40.6 7.8 63 40-112 36-101 (144)
279 TIGR00738 rrf2_super rrf2 fami 94.9 0.041 9E-07 43.2 4.3 49 49-108 24-72 (132)
280 PF07942 N2227: N2227-like pro 94.8 0.36 7.8E-06 42.9 10.5 98 195-299 55-204 (270)
281 KOG4058 Uncharacterized conser 94.8 0.13 2.8E-06 41.1 6.7 99 195-302 71-177 (199)
282 KOG2730 Methylase [General fun 94.7 0.023 4.9E-07 48.4 2.6 54 196-251 94-154 (263)
283 PF04967 HTH_10: HTH DNA bindi 94.7 0.076 1.6E-06 34.8 4.5 43 28-77 5-47 (53)
284 KOG1562 Spermidine synthase [A 94.7 0.11 2.4E-06 46.3 6.8 102 194-299 119-238 (337)
285 PRK11050 manganese transport r 94.6 0.36 7.8E-06 39.1 9.3 58 40-111 42-99 (152)
286 PF09012 FeoC: FeoC like trans 94.6 0.02 4.4E-07 39.7 1.6 44 41-88 6-49 (69)
287 KOG3924 Putative protein methy 94.5 0.17 3.7E-06 46.8 7.9 111 186-304 184-315 (419)
288 COG0275 Predicted S-adenosylme 94.5 0.17 3.6E-06 45.3 7.6 67 183-251 12-84 (314)
289 KOG3987 Uncharacterized conser 94.4 0.013 2.9E-07 49.3 0.5 88 195-295 111-205 (288)
290 COG1321 TroR Mn-dependent tran 94.3 0.062 1.3E-06 43.6 4.2 53 48-113 22-74 (154)
291 PF10672 Methyltrans_SAM: S-ad 94.3 0.22 4.7E-06 44.7 8.0 99 195-297 122-238 (286)
292 PF04989 CmcI: Cephalosporin h 94.3 0.26 5.7E-06 41.8 8.0 100 196-301 32-151 (206)
293 PRK11512 DNA-binding transcrip 94.3 0.048 1E-06 43.6 3.5 64 38-112 43-109 (144)
294 TIGR02702 SufR_cyano iron-sulf 94.3 0.057 1.2E-06 46.0 4.1 69 39-113 5-73 (203)
295 smart00347 HTH_MARR helix_turn 94.3 0.047 1E-06 40.2 3.2 67 38-112 13-79 (101)
296 COG2265 TrmA SAM-dependent met 94.2 0.1 2.2E-06 49.7 6.0 65 195-261 292-368 (432)
297 PRK11920 rirA iron-responsive 94.2 0.077 1.7E-06 43.1 4.5 49 49-108 23-71 (153)
298 TIGR02944 suf_reg_Xantho FeS a 94.2 0.063 1.4E-06 42.2 3.9 46 49-105 24-69 (130)
299 COG3315 O-Methyltransferase in 94.0 0.3 6.4E-06 44.2 8.4 97 196-298 92-209 (297)
300 PF12802 MarR_2: MarR family; 94.0 0.032 6.9E-07 37.5 1.6 34 51-87 22-55 (62)
301 COG2345 Predicted transcriptio 93.9 0.13 2.9E-06 44.0 5.6 68 41-114 17-84 (218)
302 PF05958 tRNA_U5-meth_tr: tRNA 93.9 0.12 2.6E-06 48.0 5.8 49 199-249 199-253 (352)
303 COG1189 Predicted rRNA methyla 93.9 0.39 8.5E-06 41.5 8.4 94 185-286 69-170 (245)
304 PF04072 LCM: Leucine carboxyl 93.9 0.41 9E-06 39.9 8.6 86 196-281 78-183 (183)
305 PF03141 Methyltransf_29: Puta 93.9 0.18 3.8E-06 48.2 6.8 95 195-299 364-469 (506)
306 PF01726 LexA_DNA_bind: LexA D 93.8 0.049 1.1E-06 37.4 2.3 39 47-87 22-60 (65)
307 COG1889 NOP1 Fibrillarin-like 93.7 0.76 1.6E-05 38.9 9.4 96 194-296 74-179 (231)
308 PF01638 HxlR: HxlR-like helix 93.7 0.053 1.1E-06 39.7 2.4 63 40-111 10-73 (90)
309 PRK11014 transcriptional repre 93.7 0.11 2.3E-06 41.5 4.4 60 31-105 10-69 (141)
310 PF08220 HTH_DeoR: DeoR-like h 93.6 0.095 2.1E-06 34.9 3.4 44 40-87 5-48 (57)
311 smart00529 HTH_DTXR Helix-turn 93.5 0.12 2.6E-06 38.0 4.2 46 53-111 2-47 (96)
312 COG3355 Predicted transcriptio 93.5 0.063 1.4E-06 41.8 2.6 49 37-88 29-77 (126)
313 cd07377 WHTH_GntR Winged helix 93.4 0.26 5.7E-06 33.1 5.5 34 51-87 26-59 (66)
314 TIGR01884 cas_HTH CRISPR locus 93.3 0.09 2E-06 44.7 3.6 59 37-107 145-203 (203)
315 cd00090 HTH_ARSR Arsenical Res 93.2 0.13 2.8E-06 35.4 3.8 57 39-108 11-67 (78)
316 PF01047 MarR: MarR family; I 93.2 0.035 7.6E-07 37.0 0.8 41 43-87 11-51 (59)
317 PF05971 Methyltransf_10: Prot 93.1 0.45 9.7E-06 42.9 7.8 74 196-270 102-192 (299)
318 smart00345 HTH_GNTR helix_turn 93.1 0.2 4.4E-06 32.9 4.4 36 49-87 18-54 (60)
319 COG4742 Predicted transcriptio 93.1 0.11 2.5E-06 45.5 3.9 66 31-112 9-74 (260)
320 TIGR01889 Staph_reg_Sar staphy 93.0 0.13 2.7E-06 39.2 3.6 53 49-111 42-97 (109)
321 COG4190 Predicted transcriptio 92.9 0.1 2.2E-06 40.6 2.9 55 29-87 58-112 (144)
322 smart00418 HTH_ARSR helix_turn 92.9 0.2 4.2E-06 33.3 4.2 36 49-87 9-44 (66)
323 COG0742 N6-adenine-specific me 92.8 0.99 2.1E-05 37.8 8.9 101 196-301 43-157 (187)
324 PRK06474 hypothetical protein; 92.8 0.13 2.9E-06 42.8 3.8 77 29-110 5-82 (178)
325 PRK06266 transcription initiat 92.7 0.21 4.5E-06 41.6 4.8 46 38-87 25-70 (178)
326 smart00420 HTH_DEOR helix_turn 92.5 0.16 3.5E-06 32.4 3.2 42 42-87 7-48 (53)
327 COG4189 Predicted transcriptio 92.5 0.15 3.2E-06 43.7 3.7 57 27-87 15-71 (308)
328 PRK10870 transcriptional repre 92.5 0.27 5.8E-06 40.9 5.2 64 39-112 59-126 (176)
329 KOG2352 Predicted spermine/spe 92.3 1.1 2.5E-05 42.7 9.6 103 199-305 51-171 (482)
330 PLN02668 indole-3-acetate carb 92.0 3.3 7.3E-05 38.8 12.2 104 196-302 63-242 (386)
331 PRK10742 putative methyltransf 91.8 0.5 1.1E-05 41.3 6.3 109 184-301 76-223 (250)
332 PF00325 Crp: Bacterial regula 91.8 0.22 4.7E-06 28.9 2.7 31 50-83 2-32 (32)
333 TIGR00122 birA_repr_reg BirA b 91.7 0.22 4.8E-06 34.3 3.3 45 38-87 3-47 (69)
334 PF08279 HTH_11: HTH domain; 91.7 0.25 5.3E-06 32.3 3.4 42 40-84 5-46 (55)
335 cd07153 Fur_like Ferric uptake 91.7 0.25 5.4E-06 37.8 3.9 47 39-88 5-56 (116)
336 PF01861 DUF43: Protein of unk 91.6 2.9 6.3E-05 36.4 10.7 93 196-294 44-146 (243)
337 PF07381 DUF1495: Winged helix 91.4 0.24 5.2E-06 36.2 3.2 68 34-111 8-87 (90)
338 TIGR01610 phage_O_Nterm phage 91.2 0.44 9.6E-06 35.2 4.6 44 49-104 46-89 (95)
339 PF01325 Fe_dep_repress: Iron 91.2 0.36 7.8E-06 32.5 3.7 37 48-87 20-56 (60)
340 PF06859 Bin3: Bicoid-interact 91.2 0.19 4.1E-06 38.1 2.6 39 256-298 2-44 (110)
341 COG3432 Predicted transcriptio 90.6 0.13 2.8E-06 37.9 1.2 54 48-111 29-82 (95)
342 PRK14165 winged helix-turn-hel 90.5 0.5 1.1E-05 40.6 4.9 67 31-111 6-72 (217)
343 PF03444 HrcA_DNA-bdg: Winged 90.5 0.53 1.1E-05 33.3 4.2 52 48-110 21-72 (78)
344 PF14394 DUF4423: Domain of un 90.3 0.42 9.1E-06 39.5 4.2 48 49-109 38-87 (171)
345 smart00344 HTH_ASNC helix_turn 90.3 0.22 4.8E-06 37.5 2.4 46 37-86 5-50 (108)
346 PRK15431 ferrous iron transpor 90.3 0.4 8.7E-06 33.9 3.4 42 42-87 9-50 (78)
347 KOG2187 tRNA uracil-5-methyltr 90.2 0.34 7.5E-06 46.3 4.0 54 194-249 381-440 (534)
348 TIGR00373 conserved hypothetic 90.2 0.29 6.4E-06 39.9 3.2 46 38-87 17-62 (158)
349 PRK04172 pheS phenylalanyl-tRN 89.5 0.28 6E-06 47.6 2.9 65 37-113 8-72 (489)
350 KOG2798 Putative trehalase [Ca 89.4 3.9 8.5E-05 37.0 9.7 97 197-300 151-299 (369)
351 PF13545 HTH_Crp_2: Crp-like h 89.3 0.62 1.4E-05 32.5 4.0 51 31-87 7-62 (76)
352 PF10007 DUF2250: Uncharacteri 88.7 0.46 9.9E-06 34.9 2.8 46 38-87 10-55 (92)
353 COG4627 Uncharacterized protei 88.6 0.21 4.6E-06 40.3 1.1 41 255-298 47-87 (185)
354 PF06163 DUF977: Bacterial pro 88.2 0.57 1.2E-05 36.3 3.2 50 34-87 11-60 (127)
355 COG0144 Sun tRNA and rRNA cyto 88.1 8.1 0.00017 35.9 11.5 102 194-298 154-289 (355)
356 PRK13777 transcriptional regul 88.0 0.68 1.5E-05 38.8 3.9 64 38-112 48-114 (185)
357 PHA02943 hypothetical protein; 87.9 0.69 1.5E-05 37.0 3.5 43 40-87 16-58 (165)
358 COG1565 Uncharacterized conser 87.7 1.9 4.2E-05 39.7 6.8 63 164-232 51-121 (370)
359 COG5631 Predicted transcriptio 87.5 1.7 3.6E-05 35.2 5.6 79 22-109 63-148 (199)
360 KOG1501 Arginine N-methyltrans 87.4 1.4 3E-05 41.6 5.8 90 195-285 65-165 (636)
361 PF00392 GntR: Bacterial regul 87.3 1.3 2.9E-05 29.8 4.4 51 30-87 7-58 (64)
362 COG2512 Predicted membrane-ass 87.2 0.46 1E-05 42.0 2.5 49 37-88 197-245 (258)
363 PF02636 Methyltransf_28: Puta 87.1 1.9 4.2E-05 37.8 6.5 34 197-230 19-60 (252)
364 COG1497 Predicted transcriptio 86.9 0.47 1E-05 41.0 2.3 63 49-124 24-86 (260)
365 PF09904 HTH_43: Winged helix- 86.2 0.66 1.4E-05 33.7 2.4 53 49-107 20-72 (90)
366 PF12324 HTH_15: Helix-turn-he 86.0 0.49 1.1E-05 33.4 1.6 35 40-78 29-63 (77)
367 KOG0822 Protein kinase inhibit 86.0 5.4 0.00012 38.7 8.9 123 156-286 333-470 (649)
368 PRK04214 rbn ribonuclease BN/u 85.7 1.1 2.5E-05 42.4 4.5 45 48-105 308-352 (412)
369 COG1378 Predicted transcriptio 85.6 0.98 2.1E-05 39.7 3.7 49 49-108 29-77 (247)
370 PRK09424 pntA NAD(P) transhydr 85.5 6.6 0.00014 38.3 9.7 97 195-298 163-286 (509)
371 PLN02853 Probable phenylalanyl 85.5 0.73 1.6E-05 44.3 3.1 70 35-116 3-74 (492)
372 KOG2918 Carboxymethyl transfer 85.4 8.5 0.00018 34.8 9.5 106 194-303 85-232 (335)
373 PF11899 DUF3419: Protein of u 85.2 2.5 5.4E-05 39.6 6.4 62 238-302 273-339 (380)
374 PF06962 rRNA_methylase: Putat 85.1 3 6.6E-05 33.2 5.9 78 222-302 1-97 (140)
375 COG1064 AdhP Zn-dependent alco 85.1 4 8.6E-05 37.5 7.5 94 194-300 164-262 (339)
376 cd08283 FDH_like_1 Glutathione 85.1 5.8 0.00013 37.0 9.0 100 194-298 182-307 (386)
377 PF07789 DUF1627: Protein of u 84.7 1.9 4.2E-05 34.3 4.6 46 49-104 5-50 (155)
378 TIGR00498 lexA SOS regulatory 84.6 1.1 2.3E-05 37.9 3.4 38 48-87 23-60 (199)
379 TIGR02147 Fsuc_second hypothet 84.6 1.3 2.9E-05 39.4 4.1 49 49-108 136-184 (271)
380 PF03514 GRAS: GRAS domain fam 84.6 4.1 8.9E-05 38.1 7.6 110 184-300 100-246 (374)
381 PRK11169 leucine-responsive tr 84.5 0.94 2E-05 37.1 3.0 49 34-86 13-61 (164)
382 PF10354 DUF2431: Domain of un 84.4 6.4 0.00014 32.3 7.9 91 203-296 3-124 (166)
383 COG3413 Predicted DNA binding 84.2 2.2 4.7E-05 36.6 5.2 44 26-76 158-201 (215)
384 PRK11179 DNA-binding transcrip 84.0 0.92 2E-05 36.7 2.7 47 36-86 10-56 (153)
385 COG1846 MarR Transcriptional r 84.0 1.1 2.4E-05 33.9 3.1 70 36-113 23-92 (126)
386 PTZ00326 phenylalanyl-tRNA syn 83.9 1 2.2E-05 43.4 3.3 69 37-116 8-77 (494)
387 COG1063 Tdh Threonine dehydrog 83.7 5.9 0.00013 36.6 8.3 94 198-302 170-274 (350)
388 COG4565 CitB Response regulato 83.5 1.2 2.6E-05 37.9 3.1 37 48-87 171-207 (224)
389 PF01189 Nol1_Nop2_Fmu: NOL1/N 83.4 4.7 0.0001 36.2 7.2 101 194-297 83-219 (283)
390 COG1568 Predicted methyltransf 83.1 1.7 3.8E-05 38.5 4.1 195 52-286 36-249 (354)
391 cd00315 Cyt_C5_DNA_methylase C 82.9 6.3 0.00014 35.1 7.9 98 199-301 2-114 (275)
392 PF05732 RepL: Firmicute plasm 82.9 1.8 3.9E-05 35.5 4.0 72 16-106 46-118 (165)
393 PF02002 TFIIE_alpha: TFIIE al 82.3 0.66 1.4E-05 34.9 1.1 44 40-87 18-61 (105)
394 PF12793 SgrR_N: Sugar transpo 82.2 2.1 4.4E-05 32.9 3.8 36 49-87 18-53 (115)
395 COG5379 BtaA S-adenosylmethion 82.1 2.5 5.5E-05 37.8 4.8 65 229-296 296-365 (414)
396 PF13730 HTH_36: Helix-turn-he 81.9 1.6 3.5E-05 28.3 2.8 29 52-83 27-55 (55)
397 COG4519 Uncharacterized protei 81.9 2.4 5.2E-05 30.0 3.6 54 48-107 20-73 (95)
398 PF04445 SAM_MT: Putative SAM- 81.7 2.7 5.8E-05 36.6 4.7 75 184-262 63-158 (234)
399 COG1733 Predicted transcriptio 81.6 2.4 5.3E-05 32.8 4.1 78 16-111 13-91 (120)
400 COG1510 Predicted transcriptio 81.5 1.4 3E-05 36.1 2.7 37 48-87 39-75 (177)
401 PF03492 Methyltransf_7: SAM d 81.5 11 0.00025 34.6 9.1 106 194-302 14-188 (334)
402 KOG2539 Mitochondrial/chloropl 81.4 1.7 3.6E-05 41.4 3.6 102 196-300 200-318 (491)
403 PF05206 TRM13: Methyltransfer 81.3 3.8 8.3E-05 36.2 5.7 36 194-229 16-56 (259)
404 PF09821 AAA_assoc_C: C-termin 81.1 3.3 7.2E-05 32.1 4.7 75 55-144 2-76 (120)
405 PF04182 B-block_TFIIIC: B-blo 81.1 1.2 2.6E-05 31.3 2.0 46 39-87 6-52 (75)
406 KOG0024 Sorbitol dehydrogenase 80.6 13 0.00029 33.8 8.9 96 194-300 167-276 (354)
407 COG1522 Lrp Transcriptional re 80.3 1.5 3.2E-05 35.2 2.6 48 36-87 9-56 (154)
408 PF09929 DUF2161: Uncharacteri 79.9 4.6 9.9E-05 31.0 4.9 59 27-108 57-115 (118)
409 PRK05638 threonine synthase; V 79.6 1.9 4E-05 41.4 3.4 54 49-111 383-438 (442)
410 PF02319 E2F_TDP: E2F/DP famil 79.6 2 4.4E-05 29.8 2.7 38 49-87 23-63 (71)
411 PF06969 HemN_C: HemN C-termin 78.9 2.9 6.3E-05 28.3 3.3 47 49-108 19-65 (66)
412 PF05331 DUF742: Protein of un 78.7 2.3 5E-05 32.6 3.0 37 49-88 54-90 (114)
413 PRK13509 transcriptional repre 78.6 2.4 5.3E-05 37.3 3.6 45 39-87 9-53 (251)
414 KOG1099 SAM-dependent methyltr 78.6 4.3 9.4E-05 35.1 4.9 94 193-294 38-160 (294)
415 PRK00215 LexA repressor; Valid 78.2 3.4 7.3E-05 35.0 4.3 38 48-87 21-58 (205)
416 cd01842 SGNH_hydrolase_like_5 77.5 4 8.7E-05 33.8 4.3 44 255-302 50-103 (183)
417 PF08784 RPA_C: Replication pr 77.4 1.8 3.9E-05 32.3 2.1 35 49-86 64-98 (102)
418 PRK09775 putative DNA-binding 77.0 2.4 5.3E-05 40.5 3.4 53 41-107 6-58 (442)
419 PF13814 Replic_Relax: Replica 76.5 5.4 0.00012 33.1 5.1 68 44-112 4-71 (191)
420 PRK10906 DNA-binding transcrip 75.9 2.2 4.8E-05 37.5 2.6 45 39-87 9-53 (252)
421 PF08221 HTH_9: RNA polymerase 75.7 2.2 4.9E-05 28.8 2.0 41 42-86 20-60 (62)
422 PF07848 PaaX: PaaX-like prote 75.5 5.7 0.00012 27.6 4.0 54 44-107 14-70 (70)
423 PF03428 RP-C: Replication pro 75.5 4.2 9E-05 33.8 3.9 35 50-87 70-105 (177)
424 PRK11753 DNA-binding transcrip 75.4 4.3 9.3E-05 34.1 4.2 35 50-87 168-202 (211)
425 PF03686 UPF0146: Uncharacteri 75.4 10 0.00022 29.6 5.8 78 196-285 13-95 (127)
426 TIGR00675 dcm DNA-methyltransf 75.3 9.6 0.00021 34.7 6.7 95 200-300 1-110 (315)
427 PF05584 Sulfolobus_pRN: Sulfo 75.1 4.1 8.8E-05 28.4 3.1 42 41-87 11-52 (72)
428 PHA01634 hypothetical protein 75.0 14 0.00031 29.0 6.4 84 196-282 28-138 (156)
429 PRK11161 fumarate/nitrate redu 75.0 4 8.7E-05 35.1 4.0 36 49-87 183-218 (235)
430 COG0287 TyrA Prephenate dehydr 74.5 15 0.00032 32.9 7.5 82 198-286 4-90 (279)
431 PF03721 UDPG_MGDP_dh_N: UDP-g 74.2 7.7 0.00017 32.4 5.3 100 199-303 2-125 (185)
432 KOG2651 rRNA adenine N-6-methy 73.9 7.1 0.00015 36.3 5.3 37 194-231 151-187 (476)
433 TIGR03697 NtcA_cyano global ni 73.6 4.7 0.0001 33.3 3.9 36 49-87 142-177 (193)
434 PRK11886 bifunctional biotin-- 73.2 4.6 0.0001 36.8 4.1 55 39-106 8-62 (319)
435 PRK12423 LexA repressor; Provi 73.2 4.3 9.3E-05 34.4 3.6 37 49-87 24-60 (202)
436 PRK10434 srlR DNA-bindng trans 72.6 2.9 6.2E-05 36.9 2.5 46 38-87 8-53 (256)
437 PRK10411 DNA-binding transcrip 72.4 4.9 0.00011 35.1 3.9 44 40-87 9-52 (240)
438 PRK09802 DNA-binding transcrip 72.3 3.2 7E-05 36.9 2.8 47 37-87 19-65 (269)
439 KOG1227 Putative methyltransfe 71.1 2.1 4.5E-05 38.5 1.2 99 197-303 195-303 (351)
440 PRK11534 DNA-binding transcrip 71.0 7.7 0.00017 33.2 4.8 37 48-87 28-64 (224)
441 PF13404 HTH_AsnC-type: AsnC-t 71.0 2.3 5.1E-05 26.2 1.1 26 37-63 5-30 (42)
442 PRK09333 30S ribosomal protein 70.7 7.6 0.00016 31.2 4.2 52 49-111 66-128 (150)
443 PRK11639 zinc uptake transcrip 70.7 6.2 0.00013 32.5 3.9 52 36-87 27-80 (169)
444 COG1802 GntR Transcriptional r 70.3 7.9 0.00017 33.3 4.7 50 31-87 24-73 (230)
445 PF05491 RuvB_C: Holliday junc 70.1 5.5 0.00012 28.1 2.9 37 48-87 23-60 (76)
446 PHA02701 ORF020 dsRNA-binding 70.0 5.1 0.00011 33.3 3.2 49 36-87 5-53 (183)
447 PRK13918 CRP/FNR family transc 69.9 5.9 0.00013 33.0 3.8 35 49-86 148-182 (202)
448 PF02153 PDH: Prephenate dehyd 69.9 8.9 0.00019 33.8 5.0 70 210-286 1-71 (258)
449 PRK09391 fixK transcriptional 69.6 14 0.0003 31.8 6.1 35 49-86 178-212 (230)
450 TIGR02698 CopY_TcrY copper tra 69.5 5.2 0.00011 31.4 3.1 47 37-87 6-56 (130)
451 TIGR02787 codY_Gpos GTP-sensin 69.0 16 0.00034 31.9 6.0 66 17-87 167-232 (251)
452 PF00056 Ldh_1_N: lactate/mala 68.8 53 0.0011 25.9 8.8 98 199-297 2-118 (141)
453 PTZ00357 methyltransferase; Pr 68.6 34 0.00073 34.7 8.8 130 155-285 639-822 (1072)
454 PRK13239 alkylmercury lyase; P 68.5 3.4 7.4E-05 35.1 1.9 42 39-87 26-67 (206)
455 smart00531 TFIIE Transcription 68.4 4.9 0.00011 32.2 2.8 41 39-83 5-45 (147)
456 PRK09334 30S ribosomal protein 67.9 7.1 0.00015 28.3 3.2 36 49-87 40-75 (86)
457 PF00165 HTH_AraC: Bacterial r 67.7 4.8 0.0001 24.5 2.0 27 49-78 7-33 (42)
458 TIGR00635 ruvB Holliday juncti 67.4 5.3 0.00011 35.9 3.1 37 48-87 253-290 (305)
459 PF08484 Methyltransf_14: C-me 67.3 65 0.0014 26.2 9.2 90 195-295 66-157 (160)
460 PF01475 FUR: Ferric uptake re 66.8 2.9 6.4E-05 32.0 1.2 63 37-105 10-74 (120)
461 PRK10046 dpiA two-component re 66.6 5.9 0.00013 33.8 3.1 45 40-87 167-211 (225)
462 PRK10402 DNA-binding transcrip 66.5 7.3 0.00016 33.4 3.7 36 49-87 168-203 (226)
463 PRK11642 exoribonuclease R; Pr 66.5 6.7 0.00014 40.6 3.9 48 40-87 24-72 (813)
464 COG1255 Uncharacterized protei 66.3 58 0.0013 25.1 9.0 80 195-285 12-95 (129)
465 PF01210 NAD_Gly3P_dh_N: NAD-d 66.3 12 0.00026 30.1 4.7 82 199-286 1-95 (157)
466 TIGR03338 phnR_burk phosphonat 66.2 13 0.00029 31.3 5.3 50 31-87 19-68 (212)
467 COG1675 TFA1 Transcription ini 66.0 5.8 0.00013 32.9 2.7 45 39-87 22-66 (176)
468 PF13518 HTH_28: Helix-turn-he 65.9 4.8 0.0001 25.5 1.9 29 51-82 13-41 (52)
469 COG0686 Ald Alanine dehydrogen 64.9 24 0.00053 32.1 6.6 92 197-294 168-265 (371)
470 COG1349 GlpR Transcriptional r 64.7 6.6 0.00014 34.6 3.1 45 39-87 9-53 (253)
471 COG0735 Fur Fe2+/Zn2+ uptake r 64.4 7.4 0.00016 31.2 3.0 66 36-107 22-89 (145)
472 PF08222 HTH_CodY: CodY helix- 64.4 15 0.00033 24.3 3.8 36 49-87 3-38 (61)
473 TIGR00561 pntA NAD(P) transhyd 64.2 23 0.0005 34.6 6.9 91 196-294 163-281 (511)
474 TIGR03433 padR_acidobact trans 64.2 18 0.0004 26.7 5.0 59 49-112 16-82 (100)
475 TIGR03879 near_KaiC_dom probab 64.0 3.7 8.1E-05 28.7 1.1 34 49-85 31-64 (73)
476 PF02254 TrkA_N: TrkA-N domain 63.6 33 0.00071 25.6 6.5 83 201-295 2-94 (116)
477 cd05213 NAD_bind_Glutamyl_tRNA 63.6 35 0.00076 30.9 7.7 100 196-306 177-280 (311)
478 COG0541 Ffh Signal recognition 63.2 31 0.00067 32.8 7.2 103 196-301 99-225 (451)
479 PRK07502 cyclohexadienyl dehyd 63.1 47 0.001 29.9 8.5 84 197-286 6-92 (307)
480 PF09681 Phage_rep_org_N: N-te 63.0 14 0.00031 28.6 4.3 49 49-110 52-100 (121)
481 PF11994 DUF3489: Protein of u 62.8 19 0.00042 25.1 4.4 43 41-87 16-60 (72)
482 KOG2352 Predicted spermine/spe 62.7 9.7 0.00021 36.5 3.9 130 164-301 267-419 (482)
483 PRK10736 hypothetical protein; 62.5 11 0.00024 35.2 4.2 45 38-87 311-355 (374)
484 PF03297 Ribosomal_S25: S25 ri 62.3 9.9 0.00021 28.7 3.2 37 49-88 58-94 (105)
485 TIGR01321 TrpR trp operon repr 62.1 5.1 0.00011 29.5 1.6 39 34-77 41-79 (94)
486 COG2933 Predicted SAM-dependen 62.0 19 0.00041 32.0 5.3 55 194-251 209-263 (358)
487 PRK11414 colanic acid/biofilm 62.0 15 0.00033 31.3 4.8 37 48-87 32-68 (221)
488 COG3510 CmcI Cephalosporin hyd 61.6 90 0.0019 26.5 8.9 107 195-307 68-190 (237)
489 COG1725 Predicted transcriptio 61.6 14 0.00031 28.7 4.0 36 49-87 34-69 (125)
490 PLN02353 probable UDP-glucose 61.4 61 0.0013 31.4 9.2 100 199-303 3-132 (473)
491 PRK09880 L-idonate 5-dehydroge 61.3 50 0.0011 30.0 8.5 92 196-298 169-267 (343)
492 KOG1596 Fibrillarin and relate 61.3 58 0.0013 28.6 8.0 95 194-296 154-260 (317)
493 PF12692 Methyltransf_17: S-ad 61.0 52 0.0011 26.5 7.1 53 198-251 30-82 (160)
494 PF14338 Mrr_N: Mrr N-terminal 60.9 6.5 0.00014 28.7 2.0 33 71-113 58-90 (92)
495 COG0640 ArsR Predicted transcr 60.8 13 0.00027 26.6 3.6 56 29-88 19-74 (110)
496 PF11599 AviRa: RRNA methyltra 60.4 84 0.0018 27.2 8.7 100 195-297 50-214 (246)
497 PRK09273 hypothetical protein; 60.1 19 0.00042 30.7 4.9 39 199-237 65-103 (211)
498 PRK05562 precorrin-2 dehydroge 60.1 81 0.0018 27.2 8.9 65 196-262 24-92 (223)
499 PF02295 z-alpha: Adenosine de 59.7 2.5 5.5E-05 29.0 -0.4 59 37-105 6-64 (66)
500 PRK09462 fur ferric uptake reg 59.6 12 0.00025 30.0 3.4 52 36-87 18-72 (148)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=4.5e-38 Score=279.03 Aligned_cols=273 Identities=32% Similarity=0.553 Sum_probs=242.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcC--CCCCCcccHHHHHHHHHhCCceeeeccCCC
Q 037127 14 EAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALT--INPSKTRCVYRLMRILIHSGFFAQQTLNSS 91 (307)
Q Consensus 14 ~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g--~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~ 91 (307)
....+++++++++..+++|++|+||||||.|.+++ + ..|||..+. .+|.++..++|+||.|++.++++....
T Consensus 5 ~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~-~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~--- 78 (342)
T KOG3178|consen 5 EASLRAMRLANGFALPMVLKAACELGVFDILANAG-S--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLV--- 78 (342)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCC-C--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeee---
Confidence 45678899999999999999999999999999742 2 888888877 455578999999999999999999863
Q ss_pred CCCCCCCCeeecChhcchhhcCC-CCChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHHHH
Q 037127 92 RNNNDEEQGYVLTNASKLLLKDS-PLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNF 170 (307)
Q Consensus 92 ~~~~~~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~~~ 170 (307)
+.+ .|++++.++++.+++ ..++.+++....+...++.|..+.++++.+. .+|..++|...++|...+......
T Consensus 79 ----~~~-~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~ 152 (342)
T KOG3178|consen 79 ----GGE-VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKD 152 (342)
T ss_pred ----cce-eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHH
Confidence 123 899999999777443 3588888888888889999999999999998 589999998899999988888889
Q ss_pred HHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEecCCC
Q 037127 171 FNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMF 250 (307)
Q Consensus 171 f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~ 250 (307)
|+++|...+......+++.+. ++++....||||||.|..+..++..||+++++.+|+|.+++.++...+.|+.+.+|+|
T Consensus 153 ~~~sm~~l~~~~~~~il~~~~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmf 231 (342)
T KOG3178|consen 153 FNGSMSFLSTLVMKKILEVYT-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMF 231 (342)
T ss_pred HHHHHHHHHHHHHHhhhhhhc-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceeccccc
Confidence 999999888777777777776 4778899999999999999999999999999999999999999863267999999999
Q ss_pred CCCCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 251 EAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 251 ~~~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
++.|..|+|++.||||||+|++|++||++|+++|+| +|+|+|+|.+.|+
T Consensus 232 q~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~---~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 232 QDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPP---GGKIIVVENVTPE 280 (342)
T ss_pred ccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCC---CCEEEEEeccCCC
Confidence 999999999999999999999999999999999999 9999999999995
No 2
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=3.8e-37 Score=279.27 Aligned_cols=249 Identities=23% Similarity=0.387 Sum_probs=195.1
Q ss_pred HHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChh
Q 037127 27 INSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNA 106 (307)
Q Consensus 27 ~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~ 106 (307)
+.+.+|++|+++||||+|.+ +|.|++|||+++|+ +++.++|+|++|+++|+|++. +++|++|+.
T Consensus 2 ~~~~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~---~~~~~~~lL~~L~~lgll~~~-----------~~~y~~t~~ 65 (306)
T TIGR02716 2 IEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINLE-----------DGKWSLTEF 65 (306)
T ss_pred chHHHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCC---ChHHHHHHHHHHHhCCCeEec-----------CCcEecchh
Confidence 35789999999999999986 79999999999999 689999999999999999986 489999999
Q ss_pred cchhhcCCCC----ChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHHHHHHHHHH-hchhh
Q 037127 107 SKLLLKDSPL----SVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMA-SDARL 181 (307)
Q Consensus 107 s~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~~~f~~~m~-~~~~~ 181 (307)
++.+..+.+. ++.++..+. .......|..++++++++. +|... +.+....++. ..|...|. .....
T Consensus 66 ~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~~~--~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~ 136 (306)
T TIGR02716 66 ADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQK--NFKGQ-----VPYPPVTRED-NLYFEEIHRSNAKF 136 (306)
T ss_pred HHhhccCCccchhhhcCchHHHH-HHHHHHHHHhHHHHhcCCc--ccccc-----cCCCCCCHHH-HHhHHHHHHhcchh
Confidence 9965544322 111232222 1122356899999998533 34322 2222222223 33444444 33344
Q ss_pred hHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCC-CCC
Q 037127 182 ATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIP 254 (307)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p 254 (307)
..+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ ..+||+++++|+++ ++|
T Consensus 137 ~~~~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~ 214 (306)
T TIGR02716 137 AIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP 214 (306)
T ss_pred HHHHHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC
Confidence 4566666666 67788999999999999999999999999999999999988765 46799999999997 677
Q ss_pred CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCC
Q 037127 255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKG 305 (307)
Q Consensus 255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~~ 305 (307)
++|+|++++++|+|+++++.++|++++++|+| ||+++|.|.+++++..
T Consensus 215 ~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~p---gG~l~i~d~~~~~~~~ 262 (306)
T TIGR02716 215 EADAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDPEN 262 (306)
T ss_pred CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCC
Confidence 79999999999999999899999999999999 9999999999877654
No 3
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=2.1e-37 Score=271.77 Aligned_cols=202 Identities=36% Similarity=0.725 Sum_probs=179.8
Q ss_pred CCeeecChhcchhhcCCC-CChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHHHHHHHHHH
Q 037127 98 EQGYVLTNASKLLLKDSP-LSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMA 176 (307)
Q Consensus 98 ~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~~~f~~~m~ 176 (307)
+++|++|+.|+.|+.+.+ .++..++.++..+.++..|..|++++++++ ++|+..+|.++|+|+.++++..+.|..+|.
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 81 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMA 81 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence 589999999998776654 578888877667888999999999999998 789999999999999999999999999999
Q ss_pred hchhhhH-HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEecCCCCCCCC
Q 037127 177 SDARLAT-RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIPP 255 (307)
Q Consensus 177 ~~~~~~~-~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~~p~ 255 (307)
..+.... ..+...++ +++.++|||||||+|.++..++++||+++++++|+|.|++.+++ .+||++++||+++++|.
T Consensus 82 ~~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-~~rv~~~~gd~f~~~P~ 158 (241)
T PF00891_consen 82 EYSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-ADRVEFVPGDFFDPLPV 158 (241)
T ss_dssp HHHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-TTTEEEEES-TTTCCSS
T ss_pred hhhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-ccccccccccHHhhhcc
Confidence 9887776 77778888 78889999999999999999999999999999999999999996 99999999999998999
Q ss_pred ccEEEechhhccCChhHHHHHHHHHHHhccCCCCC--cEEEEEeeecCCCCCC
Q 037127 256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKI--GKVIIIDMMRENKKGD 306 (307)
Q Consensus 256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~g--g~lli~e~~~~~~~~~ 306 (307)
+|+|++++|||+|++++|++||++++++|+| | |+|+|+|+++++++..
T Consensus 159 ~D~~~l~~vLh~~~d~~~~~iL~~~~~al~p---g~~g~llI~e~~~~~~~~~ 208 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSDEDCVKILRNAAAALKP---GKDGRLLIIEMVLPDDRTG 208 (241)
T ss_dssp ESEEEEESSGGGS-HHHHHHHHHHHHHHSEE---CTTEEEEEEEEEECSSSSS
T ss_pred ccceeeehhhhhcchHHHHHHHHHHHHHhCC---CCCCeEEEEeeccCCCCCC
Confidence 9999999999999999999999999999998 8 9999999999998753
No 4
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.65 E-value=1.8e-15 Score=116.49 Aligned_cols=98 Identities=23% Similarity=0.432 Sum_probs=84.2
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCC-CC-C-CCCccEEEech-hh
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDM-FE-A-IPPADAVVLKW-IL 265 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~-~~-~-~p~~D~i~~~~-vL 265 (307)
..+|||||||+|.++..+++.+|+.+++++|. |.+++.+++ ..+||+++++|+ .. + .+.||+|++.. .+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 56899999999999999999999999999999 889988877 478999999999 33 2 33699999999 67
Q ss_pred ccCCh-hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 266 HDWND-EECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 266 h~~~~-~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
|++.. ++..++|+++++.|+| ||+++|.+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~~ 111 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKP---GGRLVINT 111 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCC---CcEEEEEE
Confidence 75443 5778999999999999 88888865
No 5
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=5.9e-15 Score=127.42 Aligned_cols=105 Identities=22% Similarity=0.381 Sum_probs=94.3
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC--CccEEEechhh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP--PADAVVLKWIL 265 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p--~~D~i~~~~vL 265 (307)
.++.+|||||||||-++..+++..+..+++++|. +.|++.+++ ....|+|+.+|+.+ |+| .||++.++..|
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 3678999999999999999999999999999999 899999987 11239999999999 888 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 037127 266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK 304 (307)
Q Consensus 266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~ 304 (307)
+++++.+ +.|++++|+||| ||+++++|...|+..
T Consensus 130 rnv~d~~--~aL~E~~RVlKp---gG~~~vle~~~p~~~ 163 (238)
T COG2226 130 RNVTDID--KALKEMYRVLKP---GGRLLVLEFSKPDNP 163 (238)
T ss_pred hcCCCHH--HHHHHHHHhhcC---CeEEEEEEcCCCCch
Confidence 9999875 889999999999 999999999887653
No 6
>PRK06922 hypothetical protein; Provisional
Probab=99.61 E-value=9.8e-15 Score=140.86 Aligned_cols=145 Identities=19% Similarity=0.281 Sum_probs=111.3
Q ss_pred CCccccccCCcHHHHHHHHHHHhchhhh--HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHH
Q 037127 155 KSFWEYAGDEPKINNFFNEAMASDARLA--TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHV 231 (307)
Q Consensus 155 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~--~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~ 231 (307)
..+|+++...++..++|...|....... .......++ +.+..+|||||||+|.++..+++.+|+.+++++|+ +.+
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~M 454 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENV 454 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHH
Confidence 3567888888888888876665432111 111122233 34567999999999999999999999999999999 778
Q ss_pred HHhchh----cCCCeEEEecCCCC-C--CC--CccEEEechhhccC-----------ChhHHHHHHHHHHHhccCCCCCc
Q 037127 232 VNGLES----DLANLKYVGGDMFE-A--IP--PADAVVLKWILHDW-----------NDEECVKILKKCKEAITSNSKIG 291 (307)
Q Consensus 232 ~~~a~~----~~~rv~~~~~d~~~-~--~p--~~D~i~~~~vLh~~-----------~~~~~~~~L~~~~~~L~p~~~gg 291 (307)
++.+++ ...+++++++|+.+ + ++ .+|+|+++.++|+| +.++..++|++++++|+| ||
T Consensus 455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP---GG 531 (677)
T PRK06922 455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP---GG 531 (677)
T ss_pred HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC---Cc
Confidence 888875 23578889999876 2 33 49999999999976 345778999999999999 99
Q ss_pred EEEEEeeecCCCC
Q 037127 292 KVIIIDMMRENKK 304 (307)
Q Consensus 292 ~lli~e~~~~~~~ 304 (307)
+++|.|.++++++
T Consensus 532 rLII~D~v~~E~~ 544 (677)
T PRK06922 532 RIIIRDGIMTEDK 544 (677)
T ss_pred EEEEEeCccCCch
Confidence 9999998877654
No 7
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.60 E-value=8.4e-15 Score=128.30 Aligned_cols=106 Identities=18% Similarity=0.287 Sum_probs=93.2
Q ss_pred cCCCeEEEecCCchHHHHHHHHHC--CCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCCCccEEEechh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAF--PNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIPPADAVVLKWI 264 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p~~D~i~~~~v 264 (307)
.+..+|||||||+|.++..+++.+ |+.+++++|+ +.+++.|++ ...+++++.+|+.+ +.+.+|++++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 355689999999999999999974 7899999999 889988876 24589999999988 5667999999999
Q ss_pred hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
+|++++++...+|++++++|+| ||++++.|.+.+++
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~d~~~~~~ 167 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFED 167 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCC---CeEEEEeecccCCC
Confidence 9999988788999999999999 99999999877653
No 8
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.60 E-value=8.8e-15 Score=128.81 Aligned_cols=106 Identities=18% Similarity=0.283 Sum_probs=92.9
Q ss_pred cCCCeEEEecCCchHHHHHHHH--HCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCCCccEEEechh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAK--AFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIPPADAVVLKWI 264 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~--~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p~~D~i~~~~v 264 (307)
....+|||||||+|..+..+++ .+|+.+++++|. +.+++.+++ ...+++++++|+.+ +.+.+|++++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 4567899999999999999988 468999999999 899999876 24589999999987 5567999999999
Q ss_pred hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
+|++++++...++++++++|+| ||.+++.|.+..++
T Consensus 135 l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~e~~~~~~ 170 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFED 170 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCCCc
Confidence 9999887778999999999999 99999999776553
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.58 E-value=1.1e-14 Score=126.62 Aligned_cols=105 Identities=24% Similarity=0.477 Sum_probs=80.8
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC--CccEEEech
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP--PADAVVLKW 263 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p--~~D~i~~~~ 263 (307)
...+.+|||||||+|..+..+++.. |+.+++++|. +.|++.+++ ...+|+++++|..+ |+| .+|+++++.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 4557799999999999999999875 5689999999 899999986 34599999999998 777 399999999
Q ss_pred hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
.||+++|.+ +.|++++++||| ||+++|+|...|+.
T Consensus 125 glrn~~d~~--~~l~E~~RVLkP---GG~l~ile~~~p~~ 159 (233)
T PF01209_consen 125 GLRNFPDRE--RALREMYRVLKP---GGRLVILEFSKPRN 159 (233)
T ss_dssp -GGG-SSHH--HHHHHHHHHEEE---EEEEEEEEEEB-SS
T ss_pred hHHhhCCHH--HHHHHHHHHcCC---CeEEEEeeccCCCC
Confidence 999999864 789999999999 99999999988764
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.55 E-value=9.8e-14 Score=123.17 Aligned_cols=114 Identities=17% Similarity=0.327 Sum_probs=95.9
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCC--C
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIP--P 255 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p--~ 255 (307)
...++..+. +.+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ ..++++++++|+.+ ++| .
T Consensus 41 ~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 41 TTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT 117 (263)
T ss_pred HHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence 355666665 6777899999999999999998876 579999999 788888876 34689999999987 565 4
Q ss_pred ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
||+|++..++++++.++..++|++++++|+| ||+++|.|....+
T Consensus 118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~d~~~~~ 161 (263)
T PTZ00098 118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKP---NGILLITDYCADK 161 (263)
T ss_pred eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEEEecccc
Confidence 9999999998888866678999999999999 9999999987654
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.55 E-value=7.9e-14 Score=123.32 Aligned_cols=105 Identities=17% Similarity=0.256 Sum_probs=89.2
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCC--CCccEEE
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAI--PPADAVV 260 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~--p~~D~i~ 260 (307)
..++..+. .....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++++.+|+.+.. +.||+|+
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~--~~~~~~~~d~~~~~~~~~fD~v~ 94 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE--RGVDARTGDVRDWKPKPDTDVVV 94 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh--cCCcEEEcChhhCCCCCCceEEE
Confidence 45666665 56678999999999999999999999999999999 889988873 46889999987632 3599999
Q ss_pred echhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
++.++|++++. .++|++++++|+| ||+++|..
T Consensus 95 ~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~ 126 (255)
T PRK14103 95 SNAALQWVPEH--ADLLVRWVDELAP---GSWIAVQV 126 (255)
T ss_pred EehhhhhCCCH--HHHHHHHHHhCCC---CcEEEEEc
Confidence 99999998875 5889999999999 99998863
No 12
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.54 E-value=1.4e-13 Score=121.97 Aligned_cols=104 Identities=15% Similarity=0.254 Sum_probs=89.2
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh--------cCCCeEEEecCCCC-CCC--CccEEE
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES--------DLANLKYVGGDMFE-AIP--PADAVV 260 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~--------~~~rv~~~~~d~~~-~~p--~~D~i~ 260 (307)
..+..+|||||||+|.++..+++.+ |+.+++++|+ +.|++.|++ ..++++++++|+.+ |++ .||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 3456799999999999999999875 6679999999 889988864 13589999999987 666 399999
Q ss_pred echhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
+..++|++++. .++|++++++|+| ||+++|+|...++
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkp---GG~l~i~d~~~~~ 187 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKP---GSRVSILDFNKST 187 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCc---CcEEEEEECCCCC
Confidence 99999999876 4889999999999 9999999987654
No 13
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.54 E-value=8.8e-14 Score=113.31 Aligned_cols=99 Identities=23% Similarity=0.409 Sum_probs=86.6
Q ss_pred CCCeEEEecCCchHHHHHHH-HHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-C--CC-CccEEEechh
Q 037127 196 GLNSLVDVGGATGTVAKAIA-KAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A--IP-PADAVVLKWI 264 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~-~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~--~p-~~D~i~~~~v 264 (307)
+..+|||+|||+|.++..++ +.+|+.+++++|+ +.+++.+++ ..++++|..+|+.+ + ++ .||+|++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 46789999999999999999 5688999999999 889999886 34589999999999 4 33 6999999999
Q ss_pred hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
+|++++.+ .+|+++++.|++ +|.+++.+..
T Consensus 83 l~~~~~~~--~~l~~~~~~lk~---~G~~i~~~~~ 112 (152)
T PF13847_consen 83 LHHFPDPE--KVLKNIIRLLKP---GGILIISDPN 112 (152)
T ss_dssp GGGTSHHH--HHHHHHHHHEEE---EEEEEEEEEE
T ss_pred hhhccCHH--HHHHHHHHHcCC---CcEEEEEECC
Confidence 99999874 889999999999 8999988876
No 14
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.53 E-value=1.4e-13 Score=116.99 Aligned_cols=112 Identities=18% Similarity=0.235 Sum_probs=91.2
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC-C
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP-P 255 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p-~ 255 (307)
+.+++.+. .....+|||+|||+|..+..|+++ +.+++++|+ +.+++.+++ ...++++...|+.+ +.+ .
T Consensus 20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (197)
T PRK11207 20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE 95 (197)
T ss_pred HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence 44555555 445679999999999999999986 568999999 778888775 23568899999876 344 5
Q ss_pred ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
||+|++..++|++++++...++++++++|+| ||++++++.+-++
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~~~~~~~~~~~ 139 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTA 139 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCC
Confidence 9999999999998888889999999999999 9998877765443
No 15
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.52 E-value=2.5e-13 Score=120.33 Aligned_cols=107 Identities=18% Similarity=0.314 Sum_probs=91.2
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCC--CccEE
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP--PADAV 259 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p--~~D~i 259 (307)
...++..+. ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++..++++|+.+|+.+..+ .+|+|
T Consensus 20 ~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 20 ARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 355666665 56678999999999999999999999999999999 88898888755679999999876322 59999
Q ss_pred EechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 260 VLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 260 ~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
+++.++|+.++. .++|++++++|+| ||++++.
T Consensus 98 ~~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~~~~~ 129 (258)
T PRK01683 98 FANASLQWLPDH--LELFPRLVSLLAP---GGVLAVQ 129 (258)
T ss_pred EEccChhhCCCH--HHHHHHHHHhcCC---CcEEEEE
Confidence 999999988775 4899999999999 8988875
No 16
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.51 E-value=1.4e-13 Score=102.15 Aligned_cols=89 Identities=24% Similarity=0.390 Sum_probs=76.8
Q ss_pred EEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCC-CCC--CccEEEechhhccCChhHHH
Q 037127 201 VDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE-AIP--PADAVVLKWILHDWNDEECV 274 (307)
Q Consensus 201 lDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~~~~~ 274 (307)
||||||+|.++..+++. +..+++++|. +.+++.+++ ...++++..+|+.+ ++| .+|+|++.+++|++++ ..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~--~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED--PE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH--HH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccC--HH
Confidence 79999999999999998 8889999999 778888887 56678899999988 666 4999999999999944 46
Q ss_pred HHHHHHHHhccCCCCCcEEEE
Q 037127 275 KILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 275 ~~L~~~~~~L~p~~~gg~lli 295 (307)
+++++++++||| ||+++|
T Consensus 78 ~~l~e~~rvLk~---gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKP---GGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEE---EEEEEE
T ss_pred HHHHHHHHHcCc---CeEEeC
Confidence 999999999999 898876
No 17
>PLN02244 tocopherol O-methyltransferase
Probab=99.50 E-value=3.8e-13 Score=123.74 Aligned_cols=100 Identities=16% Similarity=0.221 Sum_probs=86.7
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEechh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKWI 264 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~v 264 (307)
....+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..++++|+.+|+.+ +++ .||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 456799999999999999999988 679999999 778877765 34689999999987 555 4999999999
Q ss_pred hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
+|++++. .+++++++++|+| ||+++|.+...
T Consensus 196 ~~h~~d~--~~~l~e~~rvLkp---GG~lvi~~~~~ 226 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAAP---GGRIIIVTWCH 226 (340)
T ss_pred hhccCCH--HHHHHHHHHHcCC---CcEEEEEEecc
Confidence 9999886 4899999999999 99999988654
No 18
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.46 E-value=8.4e-13 Score=114.92 Aligned_cols=110 Identities=20% Similarity=0.294 Sum_probs=90.9
Q ss_pred HHHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC--
Q 037127 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP-- 254 (307)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p-- 254 (307)
.++..+. .....+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+++ ..++++++.+|+.+ +++
T Consensus 36 ~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 36 DTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence 3444444 5567899999999999999999886 6789999999 788887775 34689999999987 444
Q ss_pred CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
.+|+|++..++|++++. .++|+++.++|+| ||++++++...+
T Consensus 114 ~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~---gG~l~~~~~~~~ 155 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPDY--MQVLREMYRVVKP---GGKVVCLETSQP 155 (231)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHHcCc---CeEEEEEECCCC
Confidence 49999999999988876 4899999999999 999999887543
No 19
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.46 E-value=8.6e-13 Score=112.00 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=87.7
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC-Cc
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP-PA 256 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p-~~ 256 (307)
..+++.+. .....+|||+|||+|..+..++++ +.+++++|+ +.+++.+++ ..-++++...|+.. +.+ .+
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 95 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY 95 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence 44555554 344679999999999999999986 578999999 778887765 12237788888765 333 59
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
|+|++..++|+++.++...++++++++|+| ||+++|++....
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lli~~~~~~ 137 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRP---GGYNLIVAAMDT 137 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCC---CcEEEEEEeccc
Confidence 999999999999887788999999999999 999888876543
No 20
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.46 E-value=7.5e-13 Score=113.01 Aligned_cols=103 Identities=16% Similarity=0.268 Sum_probs=88.4
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCC--CccEEEechhhccCChh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP--PADAVVLKWILHDWNDE 271 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~~~~~ 271 (307)
.+..+|||||||+|.++..+++..|+.+++++|+ +.+++.|++..+++++..+|+.++++ .||+|++..+||+++++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p~ 121 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINPD 121 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCHH
Confidence 4567899999999999999999889999999999 88999998644678899999988655 49999999999999887
Q ss_pred HHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 272 ECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 272 ~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
+..+++++++++++ +.++|.|...+.
T Consensus 122 ~~~~~l~el~r~~~-----~~v~i~e~~~~~ 147 (204)
T TIGR03587 122 NLPTAYRELYRCSN-----RYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHhhcC-----cEEEEEEeeCCC
Confidence 78899999999874 688888876543
No 21
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.44 E-value=9.5e-13 Score=114.07 Aligned_cols=98 Identities=15% Similarity=0.289 Sum_probs=85.5
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC-CccEEEechhhccC
Q 037127 198 NSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP-PADAVVLKWILHDW 268 (307)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~~ 268 (307)
++|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++++++..|+.+ +.+ .||+|++..++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 4799999999999999999999999999999 777777765 45789999999976 444 49999999999999
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 269 NDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 269 ~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
++. ..+|++++++|+| ||++++.++..
T Consensus 81 ~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~ 107 (224)
T smart00828 81 KDK--MDLFSNISRHLKD---GGHLVLADFIA 107 (224)
T ss_pred CCH--HHHHHHHHHHcCC---CCEEEEEEccc
Confidence 875 5899999999999 99999998753
No 22
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.44 E-value=6.4e-13 Score=100.56 Aligned_cols=89 Identities=26% Similarity=0.448 Sum_probs=74.3
Q ss_pred EEEecCCchHHHHHHHHHC---CCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CC--CCccEEEec-hhhcc
Q 037127 200 LVDVGGATGTVAKAIAKAF---PNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AI--PPADAVVLK-WILHD 267 (307)
Q Consensus 200 vlDvGgG~G~~~~~l~~~~---p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~--p~~D~i~~~-~vLh~ 267 (307)
|||+|||+|..+..+++.+ |..+++++|+ +.+++.+++ ...+++|++.|+.+ ++ ..+|+|++. .++|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 5689999999 889998887 23589999999988 32 259999995 55999
Q ss_pred CChhHHHHHHHHHHHhccCCCCCc
Q 037127 268 WNDEECVKILKKCKEAITSNSKIG 291 (307)
Q Consensus 268 ~~~~~~~~~L~~~~~~L~p~~~gg 291 (307)
+++++..++|+++++.++| ||
T Consensus 81 ~~~~~~~~ll~~~~~~l~p---gG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRP---GG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEE---EE
T ss_pred CCHHHHHHHHHHHHHHhCC---CC
Confidence 9999999999999999998 65
No 23
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.43 E-value=1.6e-12 Score=115.44 Aligned_cols=100 Identities=15% Similarity=0.265 Sum_probs=83.2
Q ss_pred cCCCeEEEecCCchH----HHHHHHHHCC-----CCeEEEecc-hHHHHhchh-c-------------------------
Q 037127 195 EGLNSLVDVGGATGT----VAKAIAKAFP-----NLECTDFDL-PHVVNGLES-D------------------------- 238 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~----~~~~l~~~~p-----~~~~~~~Dl-~~~~~~a~~-~------------------------- 238 (307)
.+..+|+|+|||+|. ++..+++.+| +.++++.|+ +.+++.|++ .
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 4566666655 578999999 889998876 1
Q ss_pred ------CCCeEEEecCCCCC-CC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 239 ------LANLKYVGGDMFEA-IP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 239 ------~~rv~~~~~d~~~~-~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
..+|+|..+|+.++ .| .+|+|+|+++||++++++..+++++++++|+| ||.++|-.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEEC
Confidence 14799999999984 33 49999999999999988888999999999999 89988754
No 24
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.42 E-value=2.4e-12 Score=123.80 Aligned_cols=111 Identities=17% Similarity=0.249 Sum_probs=92.5
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC--C
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP--P 255 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p--~ 255 (307)
..+++.+. ..+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.|++ ...+++|+.+|+.+ ++| .
T Consensus 256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 34555554 4567799999999999999999877 679999999 788888765 35689999999987 455 4
Q ss_pred ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
||+|++..+++++++. .++|++++++|+| ||+++|.+....+
T Consensus 333 fD~I~s~~~l~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~ 374 (475)
T PLN02336 333 FDVIYSRDTILHIQDK--PALFRSFFKWLKP---GGKVLISDYCRSP 374 (475)
T ss_pred EEEEEECCcccccCCH--HHHHHHHHHHcCC---CeEEEEEEeccCC
Confidence 9999999999999876 4899999999999 9999999887653
No 25
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.41 E-value=5e-14 Score=106.15 Aligned_cols=88 Identities=24% Similarity=0.419 Sum_probs=59.4
Q ss_pred EEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCC---CeEEEecCCCCCCC--CccEEEechhhccCC
Q 037127 201 VDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLA---NLKYVGGDMFEAIP--PADAVVLKWILHDWN 269 (307)
Q Consensus 201 lDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~---rv~~~~~d~~~~~p--~~D~i~~~~vLh~~~ 269 (307)
||||||+|.++..+++.+|..+++++|+ +.+++.+++ ... ++++...+..+..+ .||+|++.+++|+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 888877766 122 34555555555333 699999999999995
Q ss_pred hhHHHHHHHHHHHhccCCCCCcEE
Q 037127 270 DEECVKILKKCKEAITSNSKIGKV 293 (307)
Q Consensus 270 ~~~~~~~L~~~~~~L~p~~~gg~l 293 (307)
+ ...+|+++++.|+| ||++
T Consensus 81 ~--~~~~l~~~~~~L~p---gG~l 99 (99)
T PF08242_consen 81 D--IEAVLRNIYRLLKP---GGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TS---S-EE
T ss_pred h--HHHHHHHHHHHcCC---CCCC
Confidence 4 45999999999999 8875
No 26
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.41 E-value=2.4e-12 Score=117.28 Aligned_cols=101 Identities=27% Similarity=0.349 Sum_probs=87.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCC-CCC--CccEEEechhhccCC
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE-AIP--PADAVVLKWILHDWN 269 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~ 269 (307)
...+|||||||+|.++..+++.++..+++++|. +.+++.+++ ...+++++.+|+.+ +++ .||+|++..++|+|+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 457999999999999999999988889999999 888888876 34679999999987 554 499999999999999
Q ss_pred hhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 270 DEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 270 ~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
+.+ ++|++++++|+| ||+++|++.+.+
T Consensus 193 d~~--~~L~e~~rvLkP---GG~LvIi~~~~p 219 (340)
T PLN02490 193 DPQ--RGIKEAYRVLKI---GGKACLIGPVHP 219 (340)
T ss_pred CHH--HHHHHHHHhcCC---CcEEEEEEecCc
Confidence 875 789999999999 999999887654
No 27
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.40 E-value=1.9e-12 Score=107.88 Aligned_cols=113 Identities=19% Similarity=0.321 Sum_probs=97.1
Q ss_pred hchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCC-
Q 037127 177 SDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP- 254 (307)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p- 254 (307)
.-+++. ..++..++ .....+|+|+|||+|..+..|++++|+..++++|. +.|++.|+.....++|..+|+.+-.|
T Consensus 14 eRtRPa-~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~ 90 (257)
T COG4106 14 ERTRPA-RDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPE 90 (257)
T ss_pred hccCcH-HHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCC
Confidence 334443 56777787 77888999999999999999999999999999999 89999998778889999999988444
Q ss_pred -CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 255 -PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 255 -~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
..|+++.+-+||-.+|. .++|.++...|.| ||.+.+.=
T Consensus 91 ~~~dllfaNAvlqWlpdH--~~ll~rL~~~L~P---gg~LAVQm 129 (257)
T COG4106 91 QPTDLLFANAVLQWLPDH--PELLPRLVSQLAP---GGVLAVQM 129 (257)
T ss_pred Cccchhhhhhhhhhcccc--HHHHHHHHHhhCC---CceEEEEC
Confidence 69999999999977775 6999999999999 88887753
No 28
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.39 E-value=4.3e-12 Score=115.73 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=81.8
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC-CccEEEechhhc
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP-PADAVVLKWILH 266 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh 266 (307)
..++|||||||+|.++..+++..+. +++++|. +.++..++. ...++.|+.+|+.+ +.+ .||+|++..++|
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~ 200 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY 200 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence 4579999999999999999998765 5999998 545544322 24589999999877 444 499999999999
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
++.+. ..+|++++++|+| ||++++-+.+.+.+
T Consensus 201 H~~dp--~~~L~~l~~~Lkp---GG~lvl~~~~i~~~ 232 (322)
T PRK15068 201 HRRSP--LDHLKQLKDQLVP---GGELVLETLVIDGD 232 (322)
T ss_pred ccCCH--HHHHHHHHHhcCC---CcEEEEEEEEecCC
Confidence 98876 4789999999999 89998766655543
No 29
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.39 E-value=3.4e-12 Score=112.92 Aligned_cols=98 Identities=15% Similarity=0.222 Sum_probs=82.7
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC--CCC--CccEEEech
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE--AIP--PADAVVLKW 263 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~--~~p--~~D~i~~~~ 263 (307)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.|++ ..++++++++|+.+ +.+ .||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 45679999999999999999987 568999999 889988876 24689999999865 233 499999999
Q ss_pred hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
++|++++.. .+|++++++|+| ||+++|+...
T Consensus 121 vl~~~~~~~--~~l~~~~~~Lkp---gG~l~i~~~n 151 (255)
T PRK11036 121 VLEWVADPK--SVLQTLWSVLRP---GGALSLMFYN 151 (255)
T ss_pred HHHhhCCHH--HHHHHHHHHcCC---CeEEEEEEEC
Confidence 999998764 889999999999 9999887543
No 30
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.39 E-value=4.5e-12 Score=108.21 Aligned_cols=103 Identities=18% Similarity=0.307 Sum_probs=90.4
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCC------CeEEEecc-hHHHHhchh--------cCCCeEEEecCCCC-CCC--Cc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPN------LECTDFDL-PHVVNGLES--------DLANLKYVGGDMFE-AIP--PA 256 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~------~~~~~~Dl-~~~~~~a~~--------~~~rv~~~~~d~~~-~~p--~~ 256 (307)
....++|||+||||-.+..+++.-+. .++++.|+ |++++.+++ ...|+.++++|..+ |+| .+
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 34589999999999999999998887 78999999 999988765 24569999999998 888 49
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
|+|.++.-+-+|++.+ +.|++++++||| ||++.++|+---+
T Consensus 179 D~yTiafGIRN~th~~--k~l~EAYRVLKp---GGrf~cLeFskv~ 219 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHIQ--KALREAYRVLKP---GGRFSCLEFSKVE 219 (296)
T ss_pred eeEEEecceecCCCHH--HHHHHHHHhcCC---CcEEEEEEccccc
Confidence 9999999999999874 899999999999 9999999875433
No 31
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.38 E-value=6.2e-12 Score=113.72 Aligned_cols=110 Identities=13% Similarity=0.084 Sum_probs=85.4
Q ss_pred HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-C-CCC
Q 037127 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-A-IPP 255 (307)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~-~p~ 255 (307)
.++..+. ....++|||||||+|.++..++...+. +++++|. +.++.+++. ...++.+...++.+ + ...
T Consensus 112 ~~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~ 188 (314)
T TIGR00452 112 RVLPHLS--PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA 188 (314)
T ss_pred HHHHhcC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence 3455444 344679999999999999999988664 7999998 556654332 34688888888765 2 236
Q ss_pred ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
||+|++..+||++++. ...|++++++|+| ||.+++.+.+.+.
T Consensus 189 FD~V~s~gvL~H~~dp--~~~L~el~r~Lkp---GG~Lvletl~i~g 230 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSP--LEHLKQLKHQLVI---KGELVLETLVIDG 230 (314)
T ss_pred cCEEEEcchhhccCCH--HHHHHHHHHhcCC---CCEEEEEEEEecC
Confidence 9999999999999876 4789999999999 9999988776543
No 32
>PRK08317 hypothetical protein; Provisional
Probab=99.38 E-value=9e-12 Score=108.41 Aligned_cols=107 Identities=21% Similarity=0.308 Sum_probs=89.6
Q ss_pred HHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC--Cc
Q 037127 186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP--PA 256 (307)
Q Consensus 186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p--~~ 256 (307)
+.+.+. ..+..+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++ ...++++...|+.+ +++ .+
T Consensus 11 ~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 11 TFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 344444 5667899999999999999999988 7889999999 777777765 35679999999876 444 59
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
|+|++.+++|++++. ..++++++++|+| ||++++.++.
T Consensus 89 D~v~~~~~~~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~ 126 (241)
T PRK08317 89 DAVRSDRVLQHLEDP--ARALAEIARVLRP---GGRVVVLDTD 126 (241)
T ss_pred eEEEEechhhccCCH--HHHHHHHHHHhcC---CcEEEEEecC
Confidence 999999999999886 4789999999999 9999998864
No 33
>PLN03075 nicotianamine synthase; Provisional
Probab=99.38 E-value=4.6e-12 Score=112.68 Aligned_cols=98 Identities=15% Similarity=0.217 Sum_probs=80.6
Q ss_pred cCCCeEEEecCCchHHHH-H-HHHHCCCCeEEEecc-hHHHHhchh-------cCCCeEEEecCCCCCC---CCccEEEe
Q 037127 195 EGLNSLVDVGGATGTVAK-A-IAKAFPNLECTDFDL-PHVVNGLES-------DLANLKYVGGDMFEAI---PPADAVVL 261 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~-~-l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~d~~~~~---p~~D~i~~ 261 (307)
.++++|+|||||.|.++. . +++.+|+.+++++|. +++++.|++ ..+|++|+.+|..+.. .+||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 367899999999884433 3 346789999999999 888888877 3578999999998732 36999999
Q ss_pred chhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 262 KWILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 262 ~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
. +||+|+.++-.++|++++++|+| ||.+++-
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvlr 232 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAP---GALLMLR 232 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCC---CcEEEEe
Confidence 9 99999766668999999999999 7877764
No 34
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.37 E-value=7.4e-12 Score=109.03 Aligned_cols=99 Identities=20% Similarity=0.304 Sum_probs=84.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCC-CCC--CccEEEechhhccCCh
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFE-AIP--PADAVVLKWILHDWND 270 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~ 270 (307)
...+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ..++++++.+|+.+ +.+ .||+|++.+++|+.++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 357899999999999999999999999999999 777777776 45689999999987 434 4999999999998766
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 271 EECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 271 ~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
. ..+|++++++|+| ||.+++.++.
T Consensus 114 ~--~~~l~~~~~~L~~---~G~l~~~~~~ 137 (240)
T TIGR02072 114 L--SQALSELARVLKP---GGLLAFSTFG 137 (240)
T ss_pred H--HHHHHHHHHHcCC---CcEEEEEeCC
Confidence 5 4899999999999 8999987653
No 35
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.36 E-value=8.3e-12 Score=111.02 Aligned_cols=113 Identities=12% Similarity=0.131 Sum_probs=87.9
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCCCc
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPPA 256 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~~ 256 (307)
+.+++.+. +.++.+|||||||-|.++..+++++ +++++++.+ +...+.+++ ..+++++...|+.+-.+.|
T Consensus 52 ~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 52 DLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 55677776 7888999999999999999999999 799999999 666666654 5689999999998733379
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
|.|++...+.++..+.-..+++++.+.|+| ||++++...+.++
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq~i~~~~ 171 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQTITHRD 171 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEEEEEE--
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEEeccccc
Confidence 999999999999888778999999999999 9999987776654
No 36
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.36 E-value=1.4e-11 Score=108.63 Aligned_cols=108 Identities=14% Similarity=0.200 Sum_probs=85.1
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccE
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADA 258 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~ 258 (307)
+..+++.+. .....+|||+|||+|.++..+.+. +.+++++|+ +.+++.+++....+.++++|+.+ +++ .||+
T Consensus 31 a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~ 106 (251)
T PRK10258 31 ADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDL 106 (251)
T ss_pred HHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEE
Confidence 344555554 335678999999999999988875 578999999 88998888633446788999977 554 4999
Q ss_pred EEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 259 VVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 259 i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
|+++.++|..++. ..+|++++++|+| ||.+++....
T Consensus 107 V~s~~~l~~~~d~--~~~l~~~~~~Lk~---gG~l~~~~~~ 142 (251)
T PRK10258 107 AWSNLAVQWCGNL--STALRELYRVVRP---GGVVAFTTLV 142 (251)
T ss_pred EEECchhhhcCCH--HHHHHHHHHHcCC---CeEEEEEeCC
Confidence 9999999866654 5899999999999 8999887543
No 37
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=1.4e-11 Score=108.48 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=101.8
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCCC
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPP 255 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~ 255 (307)
.+.+++++. +.++.+|||||||-|.+++..+++| +++++++++ +++.+.+++ ...+|++.-.|+.+..+.
T Consensus 61 ~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 61 LDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 356677777 8899999999999999999999999 899999999 677777665 456899999999885445
Q ss_pred ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 037127 256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK 304 (307)
Q Consensus 256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~ 304 (307)
||-|+....++++..+.-..+++++++.|+| ||++++.....+++.
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh~I~~~~~~ 183 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLHSITGPDQE 183 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEEEecCCCcc
Confidence 9999999999999998888999999999999 999999988887754
No 38
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.35 E-value=1.1e-11 Score=111.64 Aligned_cols=101 Identities=21% Similarity=0.226 Sum_probs=84.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCC-CC-CccEEEechhhccC
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEA-IP-PADAVVLKWILHDW 268 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~-~p-~~D~i~~~~vLh~~ 268 (307)
...+|||||||+|..+..+++. +.+++++|. +.+++.+++ ..-++++...|+... .+ .||+|++..++|+.
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence 4569999999999999999986 579999999 777887765 223788888998763 34 59999999999999
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 269 NDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 269 ~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
++++...+++++.++|+| ||++++++..-.
T Consensus 198 ~~~~~~~~l~~~~~~Lkp---gG~~l~v~~~~~ 227 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNP---GGYNLIVCAMDT 227 (287)
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEEEeccc
Confidence 888888999999999999 999888765543
No 39
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.35 E-value=4.1e-12 Score=115.33 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=81.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEechhh
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKWIL 265 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~vL 265 (307)
...+|||||||+|.++..+++. +.+++++|. +.+++.|+. ...+|+++++|+.+ +.+ .||+|++..+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4568999999999999999874 679999999 888888875 23589999999866 333 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
|++++.+ .+|++++++|+| ||.++|.+.
T Consensus 209 eHv~d~~--~~L~~l~r~LkP---GG~liist~ 236 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIP---NGATVLSTI 236 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCC---CcEEEEEEC
Confidence 9999874 899999999999 899988764
No 40
>PRK06202 hypothetical protein; Provisional
Probab=99.35 E-value=2.2e-11 Score=106.15 Aligned_cols=102 Identities=24% Similarity=0.275 Sum_probs=79.9
Q ss_pred cCCCeEEEecCCchHHHHHHHHH----CCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCC-CC-C-CccEEEechh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKA----FPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE-AI-P-PADAVVLKWI 264 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~-~~-p-~~D~i~~~~v 264 (307)
.+..+|||||||+|.++..|++. .|+.+++++|+ +.+++.+++ ...++++...+... +. + .+|+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45679999999999999888764 45679999999 899998886 33456666654433 22 2 5999999999
Q ss_pred hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
+|++++++...+|++++++++ |.++|.+...+
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~ 170 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRS 170 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC-----eeEEEeccccC
Confidence 999999887899999999986 56777665543
No 41
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.34 E-value=3.7e-11 Score=104.69 Aligned_cols=110 Identities=23% Similarity=0.304 Sum_probs=90.4
Q ss_pred HHHhccccccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC--
Q 037127 186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP-- 254 (307)
Q Consensus 186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p-- 254 (307)
++..+. ..+..+|||||||+|.++..+++.+| ..+++++|+ +.+++.+++ ...++++..+|+.+ +.+
T Consensus 43 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 43 TIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 344443 33567999999999999999999998 689999999 777787776 24679999999987 333
Q ss_pred CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
.+|+|+++.++|++++. ..+|+++.++|+| ||++++++...++
T Consensus 121 ~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~li~~~~~~~~ 163 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDI--DKALREMYRVLKP---GGRLVILEFSKPT 163 (239)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHhccC---CcEEEEEEecCCC
Confidence 49999999999998875 5889999999999 9999999887654
No 42
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.33 E-value=1.6e-11 Score=113.43 Aligned_cols=109 Identities=15% Similarity=0.239 Sum_probs=87.3
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----c---CCCeEEEecCCCCCCC
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----D---LANLKYVGGDMFEAIP 254 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~---~~rv~~~~~d~~~~~p 254 (307)
+.+++.++ .....+|||+|||+|..+..+++++|+.+++++|. +.+++.+++ . ..+++++..|+++..+
T Consensus 218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 34555555 23346899999999999999999999999999999 677887775 1 2478999999988553
Q ss_pred --CccEEEechhhc---cCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 255 --PADAVVLKWILH---DWNDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 255 --~~D~i~~~~vLh---~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
.||+|+++-.+| .++++.+.++++.++++|+| ||+++|+-
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc---CCEEEEEE
Confidence 599999975554 45666678999999999999 99999884
No 43
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.33 E-value=1.6e-11 Score=118.22 Aligned_cols=113 Identities=17% Similarity=0.260 Sum_probs=93.1
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC---CCC--
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE---AIP-- 254 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~---~~p-- 254 (307)
..+++.++ ..+..+|||||||+|.++..+++.+ .+++++|. +.+++.+.+ ..++++++++|+.. ++|
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 44555554 3455689999999999999999985 47899999 888877654 35689999999964 344
Q ss_pred CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
.+|+|++..++|++++++...+|+++++.|+| ||++++.|.+....
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~---gG~l~~~d~~~~~~ 148 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKV---GGYIFFRESCFHQS 148 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC---CeEEEEEeccCCCC
Confidence 49999999999999998888999999999999 99999999887654
No 44
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.33 E-value=1e-11 Score=103.13 Aligned_cols=100 Identities=19% Similarity=0.297 Sum_probs=80.5
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCCCC--CccEEEechhhcc
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEAIP--PADAVVLKWILHD 267 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~ 267 (307)
-....+++|+|||.|.++..|+.++. +++++|+ +..++.|++ ..++|+|+..|+-+..| .||+|+++.|+|+
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred ccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 45567899999999999999999973 7899999 888999987 45799999999988666 4999999999999
Q ss_pred CCh-hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 268 WND-EECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 268 ~~~-~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
+++ ++...+++++.++|+| ||.+++-..
T Consensus 119 L~~~~~L~~~l~~l~~~L~p---gG~LV~g~~ 147 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAP---GGHLVFGHA 147 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCC---CCEEEEEEe
Confidence 986 6788899999999999 888888654
No 45
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.32 E-value=4.7e-12 Score=108.68 Aligned_cols=96 Identities=21% Similarity=0.249 Sum_probs=82.4
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-------cCC----CeEEEecCCCCCCCCccEEEechh
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-------DLA----NLKYVGGDMFEAIPPADAVVLKWI 264 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~~----rv~~~~~d~~~~~p~~D~i~~~~v 264 (307)
..+|||||||+|.++..|++. +.+++++|. +.+++.|++ ... |++|.+.|.....+.||+|+++.+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 367999999999999999999 578999999 888888876 122 588888888776667999999999
Q ss_pred hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
++|..|. ..+++.+.+.|+| +|+++|.+..
T Consensus 168 leHV~dp--~~~l~~l~~~lkP---~G~lfittin 197 (282)
T KOG1270|consen 168 LEHVKDP--QEFLNCLSALLKP---NGRLFITTIN 197 (282)
T ss_pred HHHHhCH--HHHHHHHHHHhCC---CCceEeeehh
Confidence 9999887 4899999999999 8999987654
No 46
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.31 E-value=4.5e-11 Score=103.31 Aligned_cols=90 Identities=18% Similarity=0.192 Sum_probs=76.6
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCCCccEEEechhhcc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPPADAVVLKWILHD 267 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~ 267 (307)
.+..+|||||||+|.++..+++. +.+++++|. +.++..+++ ..++++|..+|+.+....+|+|++..++++
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 34679999999999999999986 458999999 888888876 225899999999874356999999999999
Q ss_pred CChhHHHHHHHHHHHhccC
Q 037127 268 WNDEECVKILKKCKEAITS 286 (307)
Q Consensus 268 ~~~~~~~~~L~~~~~~L~p 286 (307)
+++++...+++++++.+++
T Consensus 132 ~~~~~~~~~l~~i~~~~~~ 150 (219)
T TIGR02021 132 YPASDMAKALGHLASLTKE 150 (219)
T ss_pred CCHHHHHHHHHHHHHHhCC
Confidence 9887778899999998875
No 47
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.31 E-value=2.6e-11 Score=108.23 Aligned_cols=104 Identities=14% Similarity=0.308 Sum_probs=87.1
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC--CccEEEech
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP--PADAVVLKW 263 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p--~~D~i~~~~ 263 (307)
+....+|||||||+|..+..+++.. +..+++++|+ +.+++.+++ ..+++++..+|+.+ +++ .||+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 4567899999999999888877764 5668999999 888888876 34689999999877 554 499999999
Q ss_pred hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
++|++++. .++|++++++|+| ||++++.+.+...
T Consensus 155 v~~~~~d~--~~~l~~~~r~Lkp---GG~l~i~~~~~~~ 188 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLKP---GGRFAISDVVLRG 188 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcCC---CcEEEEEEeeccC
Confidence 99988875 4789999999999 9999999876543
No 48
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.31 E-value=2.4e-11 Score=102.40 Aligned_cols=97 Identities=22% Similarity=0.370 Sum_probs=79.6
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC-CccEEEechhhc
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP-PADAVVLKWILH 266 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p-~~D~i~~~~vLh 266 (307)
.....+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..++++++.+|...+.+ .+|++++....+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~ 108 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGG 108 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCcc
Confidence 45677999999999999999999999999999999 788888765 23579999999865554 599999887654
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
++ ..+++.+++.|+| ||++++...
T Consensus 109 ~~-----~~~l~~~~~~Lk~---gG~lv~~~~ 132 (187)
T PRK08287 109 NL-----TAIIDWSLAHLHP---GGRLVLTFI 132 (187)
T ss_pred CH-----HHHHHHHHHhcCC---CeEEEEEEe
Confidence 33 4689999999998 898877543
No 49
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.29 E-value=8.3e-12 Score=106.41 Aligned_cols=98 Identities=18% Similarity=0.244 Sum_probs=80.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCC--eEEEecCCCC-CC--CCccEEEechhhcc
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLAN--LKYVGGDMFE-AI--PPADAVVLKWILHD 267 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~r--v~~~~~d~~~-~~--p~~D~i~~~~vLh~ 267 (307)
...+|||||||.|.++..+++. +.+++++|+ +..++.|+. .... +.+.+....+ .. ..||+|+|..||+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 4678999999999999999999 589999999 788888875 2333 4466665555 22 36999999999999
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 268 WNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
.++++ .++++|.+.+|| ||.+++....+
T Consensus 137 v~dp~--~~~~~c~~lvkP---~G~lf~STinr 164 (243)
T COG2227 137 VPDPE--SFLRACAKLVKP---GGILFLSTINR 164 (243)
T ss_pred cCCHH--HHHHHHHHHcCC---CcEEEEecccc
Confidence 99986 599999999999 88888876653
No 50
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.28 E-value=6.4e-11 Score=102.11 Aligned_cols=103 Identities=20% Similarity=0.309 Sum_probs=87.6
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCC--CccEEEechhhc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIP--PADAVVLKWILH 266 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh 266 (307)
.+..+|||+|||+|.++..+++.+|. .+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .+|+|++..++|
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeC
Confidence 45789999999999999999999987 78999999 777777765 34689999999987 333 499999999999
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
++++. ..+|+++++.|+| ||++++++...+.
T Consensus 118 ~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~~~ 148 (223)
T TIGR01934 118 NVTDI--QKALREMYRVLKP---GGRLVILEFSKPA 148 (223)
T ss_pred CcccH--HHHHHHHHHHcCC---CcEEEEEEecCCC
Confidence 88775 5899999999999 9999999876543
No 51
>PRK05785 hypothetical protein; Provisional
Probab=99.27 E-value=3.4e-11 Score=104.53 Aligned_cols=95 Identities=17% Similarity=0.192 Sum_probs=77.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccEEEechhhccCChh
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAVVLKWILHDWNDE 271 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~~ 271 (307)
...+|||||||+|.++..+++.+ +.+++++|+ +.|++.+++ +..++++|+.+ |++ .||+|++..+||++++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~---~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~ 126 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLV---ADDKVVGSFEALPFRDKSFDVVMSSFALHASDNI 126 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHh---ccceEEechhhCCCCCCCEEEEEecChhhccCCH
Confidence 36799999999999999999987 579999999 899998874 23467888877 555 49999999999999876
Q ss_pred HHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 272 ECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 272 ~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
.+.|++++++|+| . +.|+|...|
T Consensus 127 --~~~l~e~~RvLkp---~--~~ile~~~p 149 (226)
T PRK05785 127 --EKVIAEFTRVSRK---Q--VGFIAMGKP 149 (226)
T ss_pred --HHHHHHHHHHhcC---c--eEEEEeCCC
Confidence 4789999999997 3 445565444
No 52
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.27 E-value=7.2e-11 Score=92.09 Aligned_cols=95 Identities=21% Similarity=0.297 Sum_probs=76.7
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC---CC-CCccEEEech
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE---AI-PPADAVVLKW 263 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~---~~-p~~D~i~~~~ 263 (307)
.....+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ ..++++++.+|+.. .. +.+|+|++..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 44556999999999999999999999999999999 777877765 24679999998764 12 3599999876
Q ss_pred hhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
..+ ...++++++++.|+| ||++++.
T Consensus 97 ~~~-----~~~~~l~~~~~~Lk~---gG~li~~ 121 (124)
T TIGR02469 97 SGG-----LLQEILEAIWRRLRP---GGRIVLN 121 (124)
T ss_pred cch-----hHHHHHHHHHHHcCC---CCEEEEE
Confidence 543 235899999999999 8888764
No 53
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.27 E-value=6.2e-11 Score=98.38 Aligned_cols=99 Identities=23% Similarity=0.403 Sum_probs=80.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC--CccEEEechhhcc
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--PADAVVLKWILHD 267 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~ 267 (307)
...+|||+|||+|..+..+++.+|+.+++++|. +.+++.+++ ..+.++++..|++++.+ .||+|++.=.+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 567899999999999999999999999999999 788888776 22339999999999765 5999999988875
Q ss_pred CCh---hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 268 WND---EECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 268 ~~~---~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
-.+ +-..++++.+.+.|+| ||+++++-
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv~ 140 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKP---GGRLFLVI 140 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccC---CCEEEEEe
Confidence 543 2457899999999999 89987654
No 54
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.27 E-value=6.4e-11 Score=99.24 Aligned_cols=109 Identities=19% Similarity=0.266 Sum_probs=83.9
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC-Cc
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP-PA 256 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p-~~ 256 (307)
..++..++ .-++.++||+|||.|..+..|++. +..|+++|. +..++.+.+ ..-.|+....|+.+ .++ .+
T Consensus 20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y 95 (192)
T PF03848_consen 20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY 95 (192)
T ss_dssp HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence 44566666 445779999999999999999998 889999999 556666554 23348999999987 454 59
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
|+|++..|+++.+.+....+++++.++++| ||.++|+..+
T Consensus 96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~p---GG~~li~~~~ 135 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELRPQIIENMKAATKP---GGYNLIVTFM 135 (192)
T ss_dssp EEEEEESSGGGS-GGGHHHHHHHHHHTEEE---EEEEEEEEEB
T ss_pred CEEEEEEEeccCCHHHHHHHHHHHHhhcCC---cEEEEEEEec
Confidence 999999999999998889999999999999 8888886654
No 55
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.27 E-value=9.5e-11 Score=109.28 Aligned_cols=112 Identities=9% Similarity=0.104 Sum_probs=90.6
Q ss_pred HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCCCCCCccEEEe
Q 037127 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFEAIPPADAVVL 261 (307)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~~~p~~D~i~~ 261 (307)
.+++.+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ....+++...|+.+....||+|++
T Consensus 158 ~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs 234 (383)
T PRK11705 158 LICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVS 234 (383)
T ss_pred HHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEE
Confidence 3445554 5667899999999999999999876 579999999 888888876 223588888888653235999999
Q ss_pred chhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 262 KWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 262 ~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
..++++.++.....++++++++|+| ||++++.+...+.
T Consensus 235 ~~~~ehvg~~~~~~~l~~i~r~Lkp---GG~lvl~~i~~~~ 272 (383)
T PRK11705 235 VGMFEHVGPKNYRTYFEVVRRCLKP---DGLFLLHTIGSNK 272 (383)
T ss_pred eCchhhCChHHHHHHHHHHHHHcCC---CcEEEEEEccCCC
Confidence 9999988877667899999999999 9999998765543
No 56
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.25 E-value=1.7e-10 Score=99.07 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=85.0
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----------------cCCCeEEEecCCCCCC---
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----------------DLANLKYVGGDMFEAI--- 253 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------------~~~rv~~~~~d~~~~~--- 253 (307)
....+|||+|||.|..+..|+++ +.+++++|+ |..++.+.+ ...+|++.++|+++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 34579999999999999999987 789999999 777776422 1347999999999832
Q ss_pred -CCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 254 -PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 254 -p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
+.||.|+-+.++|+++.+...+.++++.++|+| ||+++++....+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~~~~~~ 156 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLITLDYD 156 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEcC
Confidence 358999999999999998888999999999999 898877766553
No 57
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.25 E-value=1e-10 Score=107.38 Aligned_cols=100 Identities=16% Similarity=0.252 Sum_probs=82.3
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC-CccEEEechhhccC--
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP-PADAVVLKWILHDW-- 268 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p-~~D~i~~~~vLh~~-- 268 (307)
..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..-..+++..|.++..+ .||+|+++-.+|..
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPPFH~g~~ 276 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPFHDGIQ 276 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCCccCCcc
Confidence 45899999999999999999999999999999 778888775 22245778889887554 59999999999863
Q ss_pred -ChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 269 -NDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 269 -~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
..+...++++++.+.|+| ||+++|+...
T Consensus 277 ~~~~~~~~~i~~a~~~Lkp---gG~L~iVan~ 305 (342)
T PRK09489 277 TSLDAAQTLIRGAVRHLNS---GGELRIVANA 305 (342)
T ss_pred ccHHHHHHHHHHHHHhcCc---CCEEEEEEeC
Confidence 234567999999999999 9999887643
No 58
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.24 E-value=1.4e-10 Score=97.53 Aligned_cols=95 Identities=22% Similarity=0.274 Sum_probs=78.0
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC-CccEEEechhhcc
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP-PADAVVLKWILHD 267 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~ 267 (307)
...+|||||||+|..+..+++..|+.+++++|. +.+++.+++ ..++++++.+|+.+ +.. .||+|++..+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc---
Confidence 367999999999999999999999999999999 788887775 33459999999877 223 5999998652
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 268 WNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
.+ ...+++.+++.|+| ||++++++..
T Consensus 122 -~~--~~~~l~~~~~~Lkp---GG~lv~~~~~ 147 (187)
T PRK00107 122 -AS--LSDLVELCLPLLKP---GGRFLALKGR 147 (187)
T ss_pred -cC--HHHHHHHHHHhcCC---CeEEEEEeCC
Confidence 22 35789999999999 9999988643
No 59
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.24 E-value=4.5e-11 Score=100.14 Aligned_cols=92 Identities=20% Similarity=0.210 Sum_probs=74.7
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-C-CCCccEEEechhhccC
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A-IPPADAVVLKWILHDW 268 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~-~p~~D~i~~~~vLh~~ 268 (307)
..+|||||||+|..+..++..+|+.+++++|. +.+++.+++ ..++++++++|+.+ + ...||+|++.. +|++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 67899999999999999999999999999999 677766654 34579999999977 2 23599988765 5543
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 269 NDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 269 ~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
..+++.+++.|+| ||++++..
T Consensus 122 -----~~~~~~~~~~Lkp---gG~lvi~~ 142 (181)
T TIGR00138 122 -----NVLLELTLNLLKV---GGYFLAYK 142 (181)
T ss_pred -----HHHHHHHHHhcCC---CCEEEEEc
Confidence 3578888999999 89988874
No 60
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.22 E-value=8.7e-11 Score=106.33 Aligned_cols=97 Identities=13% Similarity=0.252 Sum_probs=79.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC--CC-C-----ccEE
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA--IP-P-----ADAV 259 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~--~p-~-----~D~i 259 (307)
...+|||+|||+|..+..|++..+ ..+++++|+ +.+++.+.+ ..-+|.++++|+.+. .+ . ..++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 456899999999999999999987 589999999 778877765 224577889999873 22 2 2356
Q ss_pred EechhhccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127 260 VLKWILHDWNDEECVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 260 ~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli 295 (307)
++...+++++++++..+|++++++|+| ||.++|
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~li 175 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLI 175 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 777899999999999999999999999 888776
No 61
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.22 E-value=4.9e-11 Score=97.35 Aligned_cols=95 Identities=23% Similarity=0.333 Sum_probs=74.2
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC---CCCCccEEEechhhccCC
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE---AIPPADAVVLKWILHDWN 269 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~---~~p~~D~i~~~~vLh~~~ 269 (307)
.....+|||||||+|.++..+.+.. .+++++|. +.+++. ..+.+...+... +...||+|++..+||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc
Confidence 3567899999999999999997763 39999999 667665 223333332223 223599999999999999
Q ss_pred hhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 270 DEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 270 ~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
+. ..+|+++++.|+| ||.++|.++..
T Consensus 93 d~--~~~l~~l~~~Lkp---gG~l~~~~~~~ 118 (161)
T PF13489_consen 93 DP--EEFLKELSRLLKP---GGYLVISDPNR 118 (161)
T ss_dssp HH--HHHHHHHHHCEEE---EEEEEEEEEBT
T ss_pred cH--HHHHHHHHHhcCC---CCEEEEEEcCC
Confidence 74 5999999999999 89999998865
No 62
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.19 E-value=2.6e-10 Score=99.04 Aligned_cols=90 Identities=18% Similarity=0.249 Sum_probs=74.8
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCCCccEEEechhhcc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPPADAVVLKWILHD 267 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~ 267 (307)
.+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++..+|+......||+|++..++|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 456799999999999999999875 46999999 888888876 225899999995433346999999999999
Q ss_pred CChhHHHHHHHHHHHhccC
Q 037127 268 WNDEECVKILKKCKEAITS 286 (307)
Q Consensus 268 ~~~~~~~~~L~~~~~~L~p 286 (307)
|++++...+++++.+.+++
T Consensus 140 ~~~~~~~~~l~~l~~~~~~ 158 (230)
T PRK07580 140 YPQEDAARMLAHLASLTRG 158 (230)
T ss_pred CCHHHHHHHHHHHHhhcCC
Confidence 9998888999999987653
No 63
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.18 E-value=3.1e-10 Score=94.98 Aligned_cols=101 Identities=20% Similarity=0.273 Sum_probs=81.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC-CccEEEechhhccCC
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP-PADAVVLKWILHDWN 269 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p-~~D~i~~~~vLh~~~ 269 (307)
+..+|||+|||+|.++..+++..+ +++++|+ |.+++.+++ ..-+++++.+|+.+..+ .||+|+++-..|..+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 456899999999999999999876 8999999 888888776 23468899999887433 699999998887665
Q ss_pred hh-------------------HHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 270 DE-------------------ECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 270 ~~-------------------~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
+. -..++|+++.++|+| ||++++++....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~~~~~~ 144 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLIQSSLN 144 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEEEeccC
Confidence 32 135789999999999 999999886554
No 64
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.17 E-value=6.3e-10 Score=95.91 Aligned_cols=102 Identities=12% Similarity=0.085 Sum_probs=84.3
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----------------cCCCeEEEecCCCCC----
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----------------DLANLKYVGGDMFEA---- 252 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------------~~~rv~~~~~d~~~~---- 252 (307)
.+..+|||+|||.|..+..|+++ +.+++++|+ +..++.+.. ...+|++.++|+++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 34579999999999999999986 889999999 677776522 136799999999983
Q ss_pred CCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 253 IPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 253 ~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
.+.+|+|+-+-++|+++.+...+.++.+.++|+| ||+++++....+
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~~~~~~ 159 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLVTLDYP 159 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEeC
Confidence 2358999999999999999889999999999999 887666555444
No 65
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.16 E-value=1.6e-10 Score=98.61 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=78.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCC-CC-C--CC--CccEEEech
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDM-FE-A--IP--PADAVVLKW 263 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~-~~-~--~p--~~D~i~~~~ 263 (307)
...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..++++++++|+ .. + ++ .+|++++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 467899999999999999999999999999999 888888765 236899999999 33 2 33 489998865
Q ss_pred hhccCCh------hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 264 ILHDWND------EECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 264 vLh~~~~------~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
..+.+.. .....+|++++++|+| ||.++|..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEEc
Confidence 5432111 1135789999999999 89998874
No 66
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.12 E-value=8.8e-10 Score=94.27 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=76.2
Q ss_pred HHHhccccccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC---
Q 037127 186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--- 254 (307)
Q Consensus 186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--- 254 (307)
+++.+. .....+|||||||+|..+..+++..+ ..+++++|. +.+++.+++ ..++++++.+|+.+..+
T Consensus 64 ~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 64 MCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 344444 45567999999999999999998864 568999999 788877765 23579999999987433
Q ss_pred CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
.||+|++...++.++ +++.+.|+| ||++++.
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~---gG~lvi~ 172 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLKD---GGVLVIP 172 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcCc---CcEEEEE
Confidence 599999998887655 356678998 8998774
No 67
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.11 E-value=5.1e-10 Score=94.91 Aligned_cols=98 Identities=19% Similarity=0.301 Sum_probs=76.8
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC---C-CC--CccEEEech
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE---A-IP--PADAVVLKW 263 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~---~-~p--~~D~i~~~~ 263 (307)
...++||||||+|.++..+++++|+.+++++|+ +.+++.+.+ ...+++++.+|+.+ . .+ .+|.+++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 345899999999999999999999999999999 778877764 24589999999975 1 33 378887765
Q ss_pred hhccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 264 ILHDWNDEE-------CVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 264 vLh~~~~~~-------~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
..+ |+... ...+++.++++|+| ||.+++..
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~t 132 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFKT 132 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCC---CCEEEEEe
Confidence 433 43321 14689999999999 89987754
No 68
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.2e-09 Score=96.59 Aligned_cols=110 Identities=15% Similarity=0.237 Sum_probs=87.7
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC-Cc
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP-PA 256 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p-~~ 256 (307)
+-+++.++ .....+|+|+|||.|..+..+++.+|+.+++.+|. ...++.+++ ..++.++...|.+++.. .|
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 44566666 33344999999999999999999999999999999 667777776 23333677889998766 59
Q ss_pred cEEEechhhcc---CChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 257 DAVVLKWILHD---WNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 257 D~i~~~~vLh~---~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
|+|+++=.+|. ....-+.++++.++++|++ ||.+.|+-.
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iVan 267 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIVAN 267 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEEEc
Confidence 99999999984 2333456899999999999 999998865
No 69
>PRK04266 fibrillarin; Provisional
Probab=99.10 E-value=1.2e-09 Score=94.69 Aligned_cols=94 Identities=12% Similarity=0.183 Sum_probs=73.5
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCC-----CC-CccEEEech
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEA-----IP-PADAVVLKW 263 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~-----~p-~~D~i~~~~ 263 (307)
..+..+|||+|||+|.++..+++..+.-+++++|+ +.+++.+.+ ...+|.++.+|...+ ++ .+|+++
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~--- 146 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY--- 146 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE---
Confidence 56678999999999999999999987668999999 777765543 336799999998753 22 388887
Q ss_pred hhccCChh-HHHHHHHHHHHhccCCCCCcEEEE
Q 037127 264 ILHDWNDE-ECVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 264 vLh~~~~~-~~~~~L~~~~~~L~p~~~gg~lli 295 (307)
|+.+++ ....+|++++++||| ||+++|
T Consensus 147 --~d~~~p~~~~~~L~~~~r~LKp---GG~lvI 174 (226)
T PRK04266 147 --QDVAQPNQAEIAIDNAEFFLKD---GGYLLL 174 (226)
T ss_pred --ECCCChhHHHHHHHHHHHhcCC---CcEEEE
Confidence 344433 234578999999999 999999
No 70
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.08 E-value=1.7e-09 Score=95.19 Aligned_cols=98 Identities=24% Similarity=0.398 Sum_probs=76.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC--CccEEEechhh--
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--PADAVVLKWIL-- 265 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--~~D~i~~~~vL-- 265 (307)
...+|||+|||+|.++..+++.+|+.+++++|. +.+++.++. ..++++++.+|++++.+ .+|+|++.-..
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 456899999999999999999999999999999 788887765 33579999999988654 49999884322
Q ss_pred ----ccCChh------------------HHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 266 ----HDWNDE------------------ECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 266 ----h~~~~~------------------~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
|.+..+ ....+++++.+.|+| ||++++.
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~ 216 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLE 216 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEE
Confidence 222221 123789999999998 8887764
No 71
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.07 E-value=1.4e-09 Score=97.70 Aligned_cols=99 Identities=22% Similarity=0.381 Sum_probs=77.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC--CccEEEech---
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--PADAVVLKW--- 263 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--~~D~i~~~~--- 263 (307)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++ ..++|+++.+|++++.+ .+|+|++.=
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 456899999999999999999999999999999 788888876 24689999999988655 499999751
Q ss_pred ----------hhccCCh----------hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 264 ----------ILHDWND----------EECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 264 ----------vLh~~~~----------~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.+++.|. +...++++.+.+.|+| ||+++ +|.
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~---gG~l~-~e~ 251 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE---NGVLV-VEV 251 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEE-EEE
Confidence 1121221 1236789999999998 78765 443
No 72
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.05 E-value=2.8e-09 Score=91.65 Aligned_cols=100 Identities=15% Similarity=0.195 Sum_probs=77.5
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCC---
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAI--- 253 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~--- 253 (307)
..++..++ ..+..+|||||||+|+.+..+++.. ++.+++++|. +.+++.+++ ..++++++.+|..+..
T Consensus 66 ~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~ 143 (212)
T PRK13942 66 AIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN 143 (212)
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence 34455555 5677899999999999999998875 4468999999 888888876 3468999999998733
Q ss_pred CCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 254 PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 254 p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
..||+|++....+..+ +.+.+.|+| ||++++.
T Consensus 144 ~~fD~I~~~~~~~~~~--------~~l~~~Lkp---gG~lvi~ 175 (212)
T PRK13942 144 APYDRIYVTAAGPDIP--------KPLIEQLKD---GGIMVIP 175 (212)
T ss_pred CCcCEEEECCCcccch--------HHHHHhhCC---CcEEEEE
Confidence 2599999987765443 356668998 9998875
No 73
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.04 E-value=1.5e-09 Score=96.98 Aligned_cols=91 Identities=15% Similarity=0.269 Sum_probs=73.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCC---CeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccEEEechhhccC
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPN---LECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAVVLKWILHDW 268 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~---~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~ 268 (307)
...+|||||||+|.++..+++.+|. .+++++|+ +.+++.|.+..+++++..+|..+ +++ .+|+|+....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 4568999999999999999998875 36899999 88888887655679999999887 555 4999986532
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 269 NDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 269 ~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
+ ..+++++++|+| ||+++++.+
T Consensus 161 ~-----~~~~e~~rvLkp---gG~li~~~p 182 (272)
T PRK11088 161 P-----CKAEELARVVKP---GGIVITVTP 182 (272)
T ss_pred C-----CCHHHHHhhccC---CCEEEEEeC
Confidence 1 236788999999 999998754
No 74
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.03 E-value=2.7e-09 Score=98.53 Aligned_cols=106 Identities=14% Similarity=0.231 Sum_probs=81.0
Q ss_pred HHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC---CCC--
Q 037127 186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE---AIP-- 254 (307)
Q Consensus 186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~---~~p-- 254 (307)
+++.+. ......+||||||+|.++..+++.+|+..++++|+ +.++..+.+ ..++|.++.+|+.. .++
T Consensus 114 ~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 114 FLDFIS--KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHhc--CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 444444 23456899999999999999999999999999999 777776654 35679999999853 344
Q ss_pred CccEEEechhhccCChhHH-----HHHHHHHHHhccCCCCCcEEEEEe
Q 037127 255 PADAVVLKWILHDWNDEEC-----VKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 255 ~~D~i~~~~vLh~~~~~~~-----~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
.+|.|++.... .|+...- ..+|+.++++|+| ||.+.+..
T Consensus 192 s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~T 235 (390)
T PRK14121 192 SVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLKP---GGTLELRT 235 (390)
T ss_pred ceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcCC---CcEEEEEE
Confidence 48999876543 2654322 4789999999999 89988753
No 75
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.03 E-value=2.1e-09 Score=97.37 Aligned_cols=95 Identities=23% Similarity=0.363 Sum_probs=75.9
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC--CccEEEech-----
Q 037127 198 NSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--PADAVVLKW----- 263 (307)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--~~D~i~~~~----- 263 (307)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++ ..++|+++.+|+++..| .+|+|++.=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 888888876 24689999999988655 499999751
Q ss_pred --------hhccCCh----------hHHHHHHHHHHHhccCCCCCcEEEE
Q 037127 264 --------ILHDWND----------EECVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 264 --------vLh~~~~----------~~~~~~L~~~~~~L~p~~~gg~lli 295 (307)
..++.|. +-...+++++.+.|+| ||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence 1122221 2236889999999998 787765
No 76
>PRK04457 spermidine synthase; Provisional
Probab=99.03 E-value=1.3e-09 Score=96.69 Aligned_cols=99 Identities=17% Similarity=0.277 Sum_probs=78.5
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC---CCC-CccEEEech
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE---AIP-PADAVVLKW 263 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~---~~p-~~D~i~~~~ 263 (307)
+++++|||||||+|.++..+++.+|+.+++++|+ |.+++.+++ ..+|++++.+|..+ ..+ .||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4567899999999999999999999999999999 999999887 24789999999865 234 599998753
Q ss_pred hhc-cCChh-HHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 264 ILH-DWNDE-ECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 264 vLh-~~~~~-~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
.-. ..+.. ....+++++++.|+| ||+++|.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin 176 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSS---DGIFVVN 176 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCC---CcEEEEE
Confidence 111 12221 126899999999999 8888874
No 77
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.02 E-value=4.1e-09 Score=90.81 Aligned_cols=99 Identities=13% Similarity=0.170 Sum_probs=76.4
Q ss_pred HHHHhccccccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC---
Q 037127 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--- 254 (307)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--- 254 (307)
.++..+. ..+..+|||||||+|.++..+++..+ +.+++++|. +.+++.+++ ..++++++.+|..+..+
T Consensus 68 ~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 68 MMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 3444444 56678999999999999999999865 467999998 888888876 34689999999987322
Q ss_pred CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
.||+|++....+.. .+.+.+.|+| ||++++.
T Consensus 146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~---gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------PEALIDQLKE---GGILVMP 176 (215)
T ss_pred CCCEEEEcCCcccc--------cHHHHHhcCc---CcEEEEE
Confidence 59999987665433 3456788998 8998874
No 78
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.02 E-value=4.2e-09 Score=94.60 Aligned_cols=97 Identities=20% Similarity=0.346 Sum_probs=76.3
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC--CccEEEec------
Q 037127 198 NSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--PADAVVLK------ 262 (307)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--~~D~i~~~------ 262 (307)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++++|+.+|++++.+ .+|+|++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 778888776 33579999999998665 49999875
Q ss_pred -------hhhccCCh----------hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 263 -------WILHDWND----------EECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 263 -------~vLh~~~~----------~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.+.++-|. +...++++++.+.|+| ||.++ +|.
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~---gG~l~-~e~ 244 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP---NGFLV-CEI 244 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC---CCEEE-EEE
Confidence 23332221 1356789999999998 77654 443
No 79
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.01 E-value=4.5e-09 Score=89.25 Aligned_cols=104 Identities=20% Similarity=0.296 Sum_probs=78.8
Q ss_pred HHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC---CC-CC
Q 037127 186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE---AI-PP 255 (307)
Q Consensus 186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~---~~-p~ 255 (307)
++..+. .....+|||+|||+|.++..+++..|+.+++++|+ |.+++.+++ ..++++++.+|+.+ .. +.
T Consensus 32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 344444 45667999999999999999999889999999999 888888775 23579999999865 22 23
Q ss_pred ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
+|.+++.. ......+++++.+.|+| ||++++.....
T Consensus 110 ~d~v~~~~------~~~~~~~l~~~~~~Lkp---gG~li~~~~~~ 145 (196)
T PRK07402 110 PDRVCIEG------GRPIKEILQAVWQYLKP---GGRLVATASSL 145 (196)
T ss_pred CCEEEEEC------CcCHHHHHHHHHHhcCC---CeEEEEEeecH
Confidence 56655421 12346889999999998 89988876543
No 80
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.00 E-value=5.1e-09 Score=92.64 Aligned_cols=112 Identities=11% Similarity=0.081 Sum_probs=77.0
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhc---hh-c--CCCeEEEecCCCC-C-CC
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGL---ES-D--LANLKYVGGDMFE-A-IP 254 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a---~~-~--~~rv~~~~~d~~~-~-~p 254 (307)
+.+.+.++ .-..++|||||||+|+++..++++.|. .++++|. +....++ ++ . ..++.+.+.-+.+ + ..
T Consensus 105 ~rl~p~l~--~L~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~ 181 (315)
T PF08003_consen 105 DRLLPHLP--DLKGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG 181 (315)
T ss_pred HHHHhhhC--CcCCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence 34555554 234679999999999999999999664 6999997 3322222 22 2 2334444322222 2 22
Q ss_pred CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
.||+|++..||||..++ ...|+.++..|++ ||.+++=..+.+.+
T Consensus 182 ~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~---gGeLvLETlvi~g~ 225 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSP--LDHLKQLKDSLRP---GGELVLETLVIDGD 225 (315)
T ss_pred CcCEEEEeeehhccCCH--HHHHHHHHHhhCC---CCEEEEEEeeecCC
Confidence 59999999999998887 5889999999998 77776655555543
No 81
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.00 E-value=2.7e-09 Score=96.68 Aligned_cols=86 Identities=16% Similarity=0.153 Sum_probs=70.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----c------CCCeEEEecCCCCCCCCccEEEechh
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----D------LANLKYVGGDMFEAIPPADAVVLKWI 264 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~------~~rv~~~~~d~~~~~p~~D~i~~~~v 264 (307)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ . ..+++|...|+.+....||+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 3579999999999999999986 578999999 788888876 1 24688999997653335999999999
Q ss_pred hccCChhHHHHHHHHHHHh
Q 037127 265 LHDWNDEECVKILKKCKEA 283 (307)
Q Consensus 265 Lh~~~~~~~~~~L~~~~~~ 283 (307)
+|+++++....+++.+.+.
T Consensus 222 L~H~p~~~~~~ll~~l~~l 240 (315)
T PLN02585 222 LIHYPQDKADGMIAHLASL 240 (315)
T ss_pred EEecCHHHHHHHHHHHHhh
Confidence 9999988777888888754
No 82
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.98 E-value=6.2e-09 Score=89.27 Aligned_cols=97 Identities=13% Similarity=0.222 Sum_probs=74.4
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecchHHHHhchhcCCCeEEEecCCCCC---------CC--CccEEEe
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDLPHVVNGLESDLANLKYVGGDMFEA---------IP--PADAVVL 261 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~---------~p--~~D~i~~ 261 (307)
+.+..+|||||||+|.++..+++.. +..+++++|+.++. ....++++++|+.++ .+ .+|+|++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence 3556799999999999999999987 45689999995532 234699999999873 32 4999998
Q ss_pred chhhccCChh---------HHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 262 KWILHDWNDE---------ECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 262 ~~vLh~~~~~---------~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
....|...+. ....+|+.++++|+| ||+++|...
T Consensus 124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~~~ 166 (209)
T PRK11188 124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVKVF 166 (209)
T ss_pred CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEEe
Confidence 7766544322 124689999999999 999988643
No 83
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.98 E-value=2.5e-09 Score=82.76 Aligned_cols=96 Identities=18% Similarity=0.220 Sum_probs=76.6
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-C--CC--CccEEEechhh
Q 037127 198 NSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-A--IP--PADAVVLKWIL 265 (307)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~--~p--~~D~i~~~~vL 265 (307)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. ..+|++++.+|+++ . .+ .+|+|+++-..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 489999999999999999998 789999999 788887776 35789999999987 2 33 59999998877
Q ss_pred ccCCh------hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 266 HDWND------EECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 266 h~~~~------~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
+.... +....+++++.+.|+| ||.++++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence 64321 1346899999999999 88888764
No 84
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.97 E-value=6.2e-09 Score=77.30 Aligned_cols=93 Identities=23% Similarity=0.330 Sum_probs=76.8
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCC----CCccEEEechhhccC
Q 037127 199 SLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAI----PPADAVVLKWILHDW 268 (307)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~----p~~D~i~~~~vLh~~ 268 (307)
+++|+|||.|.++..+++ .+..+++++|+ +..+..+++ ...++++..+|+.+.. +.+|++++..+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999998 67789999999 666666652 4578999999998842 259999999999975
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 269 NDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 269 ~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
.+....+++.+.+.+++ +|.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~---~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKP---GGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence 44567999999999998 8888764
No 85
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.97 E-value=9.7e-09 Score=91.67 Aligned_cols=98 Identities=23% Similarity=0.368 Sum_probs=76.7
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC--CccEEEechhh-
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--PADAVVLKWIL- 265 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--~~D~i~~~~vL- 265 (307)
.+..+|||+|||+|.++..+++.+|..+++++|+ +.+++.+++ ...+++++.+|++++.+ .+|+|++.-..
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI 186 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence 4567899999999999999999999999999999 777887776 24689999999988654 59999874221
Q ss_pred -----ccCCh------------------hHHHHHHHHHHHhccCCCCCcEEEE
Q 037127 266 -----HDWND------------------EECVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 266 -----h~~~~------------------~~~~~~L~~~~~~L~p~~~gg~lli 295 (307)
+.... +....+++++.+.|+| ||++++
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~ 236 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLL 236 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEE
Confidence 11111 1235788999999998 888776
No 86
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.94 E-value=4.6e-09 Score=91.04 Aligned_cols=100 Identities=8% Similarity=0.182 Sum_probs=82.0
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---CC--CccEEEec
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---IP--PADAVVLK 262 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~p--~~D~i~~~ 262 (307)
....+|||+|||+|..+..++++++.++++++|+ +.+.+.|++ ..+||++++.|+.+- .+ .||+|+|+
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 3478999999999999999999999999999999 788888876 689999999999872 22 48999987
Q ss_pred hhhccCChh----------------HHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 263 WILHDWNDE----------------ECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 263 ~vLh~~~~~----------------~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
=..+.-++. ....+++.+++.||| ||++.++-
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V~ 170 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFVH 170 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEEe
Confidence 655433222 235789999999999 89998764
No 87
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.94 E-value=1.2e-08 Score=88.85 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=77.7
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCC---C-CCccEEEechhh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEA---I-PPADAVVLKWIL 265 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~---~-p~~D~i~~~~vL 265 (307)
.+..+|||||||+|.++..+++. ..+++++|. +..++.+++ ...+++++..|+.+- . ..||+|++.+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 35678999999999999999886 468999999 677777664 234678888877652 2 259999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
++.++. ..+|+++.+.|+| ||++++...
T Consensus 125 ~~~~~~--~~~l~~~~~~L~~---gG~l~v~~~ 152 (233)
T PRK05134 125 EHVPDP--ASFVRACAKLVKP---GGLVFFSTL 152 (233)
T ss_pred hccCCH--HHHHHHHHHHcCC---CcEEEEEec
Confidence 988876 4789999999998 899887654
No 88
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.93 E-value=1.8e-08 Score=83.20 Aligned_cols=97 Identities=24% Similarity=0.281 Sum_probs=81.3
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC---CCCccEEEechh
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA---IPPADAVVLKWI 264 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~---~p~~D~i~~~~v 264 (307)
+.+..+++|||||+|..+.+.+..+|..+++.+|. ++.++..++ ..++++++.++.-+. .|.+|.+++..-
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg 111 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG 111 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC
Confidence 56778999999999999999999999999999998 777776655 678999999998773 446999999887
Q ss_pred hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
.. ...+|+.+.+.|+| ||+|++.--.
T Consensus 112 ~~------i~~ile~~~~~l~~---ggrlV~nait 137 (187)
T COG2242 112 GN------IEEILEAAWERLKP---GGRLVANAIT 137 (187)
T ss_pred CC------HHHHHHHHHHHcCc---CCeEEEEeec
Confidence 32 24889999999999 8998875433
No 89
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.90 E-value=1.5e-08 Score=86.19 Aligned_cols=94 Identities=20% Similarity=0.246 Sum_probs=74.9
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---C-CCccEEEe
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I-PPADAVVL 261 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~-p~~D~i~~ 261 (307)
.....+|||+|||+|.++..+++.. +..+++++|. +.+++.+++ ..++++++.+|+.+. . +.+|++++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 5567899999999999999998764 5679999999 888887765 257899999998762 2 35999988
Q ss_pred chhhccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127 262 KWILHDWNDEECVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 262 ~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli 295 (307)
... ..+...+|+.+.+.|+| ||++++
T Consensus 118 ~~~-----~~~~~~~l~~~~~~Lkp---gG~lv~ 143 (198)
T PRK00377 118 GGG-----SEKLKEIISASWEIIKK---GGRIVI 143 (198)
T ss_pred CCC-----cccHHHHHHHHHHHcCC---CcEEEE
Confidence 531 22345789999999998 898876
No 90
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.89 E-value=1.9e-08 Score=84.63 Aligned_cols=101 Identities=17% Similarity=0.213 Sum_probs=76.6
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEecchH-HHHhchh-----cCCCe-EEEecCCCCC---C-------C-CccEEE
Q 037127 199 SLVDVGGATGTVAKAIAKAFPNLECTDFDLPH-VVNGLES-----DLANL-KYVGGDMFEA---I-------P-PADAVV 260 (307)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~-~~~~a~~-----~~~rv-~~~~~d~~~~---~-------p-~~D~i~ 260 (307)
+||+||+|||.++..+++++|+++-.--|.+. .....+. ..+++ .-+.-|+.++ . + .+|+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 59999999999999999999999887777732 2222222 11221 2233444442 1 1 489999
Q ss_pred echhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
+.+++|..+-+.+..+++.+.++|++ ||.+++.-++.-+
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~YGPF~~~ 146 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKP---GGLLFLYGPFNRD 146 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEeCCcccC
Confidence 99999999999999999999999998 9999999887654
No 91
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.89 E-value=1.2e-08 Score=88.28 Aligned_cols=96 Identities=17% Similarity=0.205 Sum_probs=77.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cC-CCeEEEecCCCC-C--C-CCccEEEechhh
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DL-ANLKYVGGDMFE-A--I-PPADAVVLKWIL 265 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~-~rv~~~~~d~~~-~--~-p~~D~i~~~~vL 265 (307)
+..+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ .. .++++...|+.+ + . ..+|+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 46789999999999999998864 46999999 677777765 22 268898888765 2 2 259999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
|+..+.+ .+|++++++|++ ||.+++...
T Consensus 123 ~~~~~~~--~~l~~~~~~L~~---gG~l~i~~~ 150 (224)
T TIGR01983 123 EHVPDPQ--AFIRACAQLLKP---GGILFFSTI 150 (224)
T ss_pred HhCCCHH--HHHHHHHHhcCC---CcEEEEEec
Confidence 9988764 789999999998 899887754
No 92
>PRK14968 putative methyltransferase; Provisional
Probab=98.89 E-value=2.5e-08 Score=83.67 Aligned_cols=100 Identities=18% Similarity=0.279 Sum_probs=76.3
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCC-eEEEecCCCCCCC--CccEEEechh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLAN-LKYVGGDMFEAIP--PADAVVLKWI 264 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~r-v~~~~~d~~~~~p--~~D~i~~~~v 264 (307)
.+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ ..++ ++++.+|+.++.+ .+|++++...
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45678999999999999999998 678999999 778887765 2233 8999999988655 4999998654
Q ss_pred hccCC-------------------hhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 265 LHDWN-------------------DEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 265 Lh~~~-------------------~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
.+... ......+++++.++|+| ||+++++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~~~~ 150 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLLQSS 150 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEEEcc
Confidence 43211 12235689999999999 8988876543
No 93
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.88 E-value=1e-08 Score=86.84 Aligned_cols=86 Identities=17% Similarity=0.220 Sum_probs=68.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC---CCC--CccEEEechhhccCC
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE---AIP--PADAVVLKWILHDWN 269 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~---~~p--~~D~i~~~~vLh~~~ 269 (307)
...+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ .+++++.+|+.+ +.+ .+|+|++..++|+++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~--~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA--RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH--cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 45689999999999999888763 567899999 777777762 457888888865 233 499999999999998
Q ss_pred hhHHHHHHHHHHHhccC
Q 037127 270 DEECVKILKKCKEAITS 286 (307)
Q Consensus 270 ~~~~~~~L~~~~~~L~p 286 (307)
+. ..+|+++.+.+++
T Consensus 90 d~--~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 NP--EEILDEMLRVGRH 104 (194)
T ss_pred CH--HHHHHHHHHhCCe
Confidence 75 4778888777653
No 94
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.87 E-value=1.7e-08 Score=90.81 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=72.7
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC-CccEEEechhhc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP-PADAVVLKWILH 266 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p-~~D~i~~~~vLh 266 (307)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ...++.+...+.....+ .||+|++....+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 34579999999999999888875 4458999999 778888776 34567777776443223 599998864432
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
....++.++++.|+| ||++++....
T Consensus 237 -----~l~~ll~~~~~~Lkp---gG~li~sgi~ 261 (288)
T TIGR00406 237 -----VIKELYPQFSRLVKP---GGWLILSGIL 261 (288)
T ss_pred -----HHHHHHHHHHHHcCC---CcEEEEEeCc
Confidence 245789999999999 8999887654
No 95
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.87 E-value=2.4e-08 Score=92.94 Aligned_cols=99 Identities=17% Similarity=0.254 Sum_probs=74.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCC-CC---CccEEEechhhc
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEA-IP---PADAVVLKWILH 266 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~-~p---~~D~i~~~~vLh 266 (307)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ...+++++.+|++++ .+ .+|+|+++-.-.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 446899999999999999999999999999999 888888876 345899999999873 32 499998854211
Q ss_pred cC---------------------Ch--hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 267 DW---------------------ND--EECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 267 ~~---------------------~~--~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.- .+ +--.++++.+.+.|+| ||.++ +|.
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp---gG~li-lEi 381 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE---GGFLL-LEH 381 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC---CcEEE-EEE
Confidence 00 00 1124677888889998 78755 444
No 96
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.86 E-value=1e-07 Score=83.71 Aligned_cols=105 Identities=14% Similarity=0.139 Sum_probs=86.7
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCC--CeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC------CCCccEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPN--LECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA------IPPADAV 259 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~------~p~~D~i 259 (307)
..+.+||||.||+|.+....+..+|. .++.+.|. |..++..++ ..+-++|.++|.|+. .|.++++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999999999998 78999999 666777765 455569999999983 3468999
Q ss_pred EechhhccCChhHH-HHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 260 VLKWILHDWNDEEC-VKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 260 ~~~~vLh~~~~~~~-~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
+.+.+...|+|.+. ...|+.+++++.| ||.++-.-.-+.+
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyTgQPwHP 254 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYTGQPWHP 254 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEcCCCCCc
Confidence 99999999999774 4479999999999 8888766544443
No 97
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.85 E-value=1.2e-08 Score=84.72 Aligned_cols=86 Identities=17% Similarity=0.286 Sum_probs=68.2
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC---CCC--CccEEEechhhcc
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE---AIP--PADAVVLKWILHD 267 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~---~~p--~~D~i~~~~vLh~ 267 (307)
.++..+|||+|||.|.++..|.+. .++++.|+|+ ++-+..+- ...++.+++|+.+ .+| .||.++++.+|..
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv--~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~ 87 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV--ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQA 87 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH--HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHh
Confidence 356789999999999999888885 5899999999 44444433 4568899999987 355 4999999999998
Q ss_pred CChhHHHHHHHHHHHhc
Q 037127 268 WNDEECVKILKKCKEAI 284 (307)
Q Consensus 268 ~~~~~~~~~L~~~~~~L 284 (307)
...++ ++|+++.++-
T Consensus 88 ~~~P~--~vL~EmlRVg 102 (193)
T PF07021_consen 88 VRRPD--EVLEEMLRVG 102 (193)
T ss_pred HhHHH--HHHHHHHHhc
Confidence 87764 6788886653
No 98
>PRK14967 putative methyltransferase; Provisional
Probab=98.85 E-value=3.4e-08 Score=85.58 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=74.8
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC--CccEEEechhhc
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP--PADAVVLKWILH 266 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh 266 (307)
.....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..-+++++.+|+.+..+ .||+|++.-..+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 344579999999999999999886 3348999999 777776665 23368999999987544 599999864322
Q ss_pred cCCh-------------------hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 267 DWND-------------------EECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 267 ~~~~-------------------~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
.-+. .....+++++.+.|++ ||+++++...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~~~~ 161 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLVQSE 161 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEEEec
Confidence 1110 1135688999999999 9999986543
No 99
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.85 E-value=7e-08 Score=83.17 Aligned_cols=102 Identities=10% Similarity=0.028 Sum_probs=86.1
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----------------cCCCeEEEecCCCCCC---
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----------------DLANLKYVGGDMFEAI--- 253 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------------~~~rv~~~~~d~~~~~--- 253 (307)
.+..+||+.|||.|.-+..|++. +.+++++|+ +..++.+.+ ...+|++.++|+|+-.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34579999999999999999997 788999999 666776522 2458999999999831
Q ss_pred ---CCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 254 ---PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 254 ---p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
..+|+|+=+.+++.++++...+..+++.+.|+| ||+++++....+
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll~~~~~ 167 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLLVMEHD 167 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEEEEecC
Confidence 259999999999999999999999999999999 899888876543
No 100
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.84 E-value=3.5e-08 Score=87.00 Aligned_cols=92 Identities=21% Similarity=0.305 Sum_probs=68.0
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCCCccEEEechhhcc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPPADAVVLKWILHD 267 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~ 267 (307)
....+|||||||+|..+..+++..+. +++++|+ |.+++.+++ ..+++.+..+|. .||+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~-- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA-- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH--
Confidence 45679999999999999887776443 6999999 788888776 224455444432 58998875322
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 268 WNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
+....+++++.+.|+| ||++++.....
T Consensus 190 ---~~~~~l~~~~~~~Lkp---gG~lilsgi~~ 216 (250)
T PRK00517 190 ---NPLLELAPDLARLLKP---GGRLILSGILE 216 (250)
T ss_pred ---HHHHHHHHHHHHhcCC---CcEEEEEECcH
Confidence 2345789999999999 99999876554
No 101
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.84 E-value=2.6e-08 Score=82.86 Aligned_cols=129 Identities=20% Similarity=0.194 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCC
Q 037127 167 INNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLA 240 (307)
Q Consensus 167 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~ 240 (307)
....|++.|..+.+.....+- .+- ..+....||+||||+|.--.- -.--|..+++++|. +.|.+.+.+ ...
T Consensus 49 ft~~yne~~~~ykrelFs~i~-~~~-gk~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~ 125 (252)
T KOG4300|consen 49 FTSIYNEIADSYKRELFSGIY-YFL-GKSGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPL 125 (252)
T ss_pred HHHHHHHHHHHHHHHHHhhhH-HHh-cccCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCc
Confidence 344566666666443333221 111 123345689999999975422 12235678999999 777776655 344
Q ss_pred CeE-EEecCCCC-C-CC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 241 NLK-YVGGDMFE-A-IP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 241 rv~-~~~~d~~~-~-~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
.+. |+.++..+ + ++ .+|.|++..+|--..+ .++.|+++++.|+| ||+++++|.+..+-
T Consensus 126 ~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~--~~k~L~e~~rlLRp---gG~iifiEHva~~y 188 (252)
T KOG4300|consen 126 QVERFVVADGENLPQLADGSYDTVVCTLVLCSVED--PVKQLNEVRRLLRP---GGRIIFIEHVAGEY 188 (252)
T ss_pred ceEEEEeechhcCcccccCCeeeEEEEEEEeccCC--HHHHHHHHHHhcCC---CcEEEEEecccccc
Confidence 566 88887776 3 34 4999999999985555 47999999999999 99999999987653
No 102
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.84 E-value=1.5e-08 Score=85.67 Aligned_cols=98 Identities=12% Similarity=0.228 Sum_probs=70.4
Q ss_pred CCCeEEEecCCchH--HHHHH--HHH----CC-CCeEEEecc-hHHHHhchh----------------------------
Q 037127 196 GLNSLVDVGGATGT--VAKAI--AKA----FP-NLECTDFDL-PHVVNGLES---------------------------- 237 (307)
Q Consensus 196 ~~~~vlDvGgG~G~--~~~~l--~~~----~p-~~~~~~~Dl-~~~~~~a~~---------------------------- 237 (307)
+..+|.-.||++|. ++.++ .+. .+ .+++++.|+ +.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 56899999999993 44333 231 22 468999999 888988875
Q ss_pred -----cCCCeEEEecCCCC-CCC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 238 -----DLANLKYVGGDMFE-AIP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 238 -----~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
...+|+|..+|+.+ +.+ .+|+|+|++||-+|+++...+++++++++|+| ||.+++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEe
Confidence 13579999999999 322 59999999999999999999999999999999 8888764
No 103
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.83 E-value=5.6e-08 Score=83.50 Aligned_cols=92 Identities=14% Similarity=0.187 Sum_probs=71.4
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC---CccEEEechh
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP---PADAVVLKWI 264 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p---~~D~i~~~~v 264 (307)
..+..+|||||||+|.++..+++... +++++|. +.+++.+++ ...++++..+|..+..+ .||+|++...
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 45678999999999999988887753 7999998 778877765 24569999999877433 4999999876
Q ss_pred hccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.+.+ .+.+.+.|+| ||++++.-.
T Consensus 154 ~~~~--------~~~l~~~L~~---gG~lv~~~~ 176 (212)
T PRK00312 154 APEI--------PRALLEQLKE---GGILVAPVG 176 (212)
T ss_pred chhh--------hHHHHHhcCC---CcEEEEEEc
Confidence 6544 3456788998 898887543
No 104
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=98.83 E-value=1.5e-09 Score=70.62 Aligned_cols=49 Identities=49% Similarity=0.863 Sum_probs=42.7
Q ss_pred HHHHHHHhCCcccccccCC-CCCCHHHHHHHcC-CCCCCcccHHHHHHHHH
Q 037127 30 MSLKCAVELSIPDIINKHG-KPTTLNDLVSALT-INPSKTRCVYRLMRILI 78 (307)
Q Consensus 30 ~~L~~a~~lglfd~L~~~~-~~~t~~eLA~~~g-~~~~~~~~l~r~L~~L~ 78 (307)
++|++|++|||||.|+++| ++.|++|||.++. .+|.++..|+|+||+|+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 5899999999999999876 8999999999999 77667889999999985
No 105
>PRK00811 spermidine synthase; Provisional
Probab=98.83 E-value=2.6e-08 Score=89.39 Aligned_cols=99 Identities=17% Similarity=0.182 Sum_probs=76.5
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----------cCCCeEEEecCCCCC----CCCccEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----------DLANLKYVGGDMFEA----IPPADAV 259 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~~rv~~~~~d~~~~----~p~~D~i 259 (307)
+++++||+||||.|..+..+++..+..+++++|+ +.+++.+++ ..+|++++.+|..+- ...||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4577999999999999999998655568999999 888988876 157899999998762 1259999
Q ss_pred EechhhccCChhH--HHHHHHHHHHhccCCCCCcEEEEE
Q 037127 260 VLKWILHDWNDEE--CVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 260 ~~~~vLh~~~~~~--~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
++...-+.-+... ...+++.+++.|+| ||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 9865433222221 25789999999998 8877764
No 106
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.83 E-value=1.6e-08 Score=85.59 Aligned_cols=104 Identities=18% Similarity=0.296 Sum_probs=76.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cC---CC-eEEEecCCCC--CCC-CccEEEechhhc
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DL---AN-LKYVGGDMFE--AIP-PADAVVLKWILH 266 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~---~r-v~~~~~d~~~--~~p-~~D~i~~~~vLh 266 (307)
+..+.||.|+|.|..+..++-.+ --++-++|. +..++.|++ .. .+ .++.+..+-+ |.+ .||+|++-|++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 46889999999999999886554 236777787 888888886 22 23 4555554443 433 599999999999
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
|++|++.+.+|++|+++|+| +|.|+|=|.+...+
T Consensus 134 hLTD~dlv~fL~RCk~~L~~---~G~IvvKEN~~~~~ 167 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKP---NGVIVVKENVSSSG 167 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEE---EEEEEEEEEEESSS
T ss_pred cCCHHHHHHHHHHHHHhCcC---CcEEEEEecCCCCC
Confidence 99999999999999999999 89999999887654
No 107
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.81 E-value=2.4e-08 Score=85.00 Aligned_cols=101 Identities=20% Similarity=0.352 Sum_probs=86.6
Q ss_pred CeEEEecCCchHHHHHHHHHCCC--CeEEEecc-hHHHHhchh----cCCCeEEEecCCCCC---CC----CccEEEech
Q 037127 198 NSLVDVGGATGTVAKAIAKAFPN--LECTDFDL-PHVVNGLES----DLANLKYVGGDMFEA---IP----PADAVVLKW 263 (307)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~---~p----~~D~i~~~~ 263 (307)
.+||+||||.|...-.+++.+|+ +++...|- |..++..++ ...|+.-...|+..+ .| ..|++++..
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 37999999999999999999999 99999998 888888776 456777777777663 11 389999999
Q ss_pred hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
+|...+.+.-...+.++++.||| ||.|++-|+..-
T Consensus 153 vLSAi~pek~~~a~~nl~~llKP---GG~llfrDYg~~ 187 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKP---GGSLLFRDYGRY 187 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCC---CcEEEEeecccc
Confidence 99999988889999999999999 999999987654
No 108
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.80 E-value=3.3e-08 Score=84.14 Aligned_cols=111 Identities=16% Similarity=0.315 Sum_probs=80.4
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-------cC----------------
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-------DL---------------- 239 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~---------------- 239 (307)
+..++.+...+-.++.+|||||.+|.++..+++.|....++++|+ +..+..|++ ..
T Consensus 46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~ 125 (288)
T KOG2899|consen 46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFG 125 (288)
T ss_pred ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccc
Confidence 334444442244578899999999999999999998889999999 777888876 00
Q ss_pred -----------------CCeEEEe-------cCCCC-CCCCccEEEechhh---c-cCChhHHHHHHHHHHHhccCCCCC
Q 037127 240 -----------------ANLKYVG-------GDMFE-AIPPADAVVLKWIL---H-DWNDEECVKILKKCKEAITSNSKI 290 (307)
Q Consensus 240 -----------------~rv~~~~-------~d~~~-~~p~~D~i~~~~vL---h-~~~~~~~~~~L~~~~~~L~p~~~g 290 (307)
+.+.|+. .||.+ ..|.||+|+|-.+- | +|.|+-.+++++++++.|.| |
T Consensus 126 ~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p---g 202 (288)
T KOG2899|consen 126 PISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP---G 202 (288)
T ss_pred cccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc---C
Confidence 1222322 23443 24579999776542 4 69999999999999999999 4
Q ss_pred cEEEEEee
Q 037127 291 GKVIIIDM 298 (307)
Q Consensus 291 g~lli~e~ 298 (307)
.++|+|+
T Consensus 203 -GiLvvEP 209 (288)
T KOG2899|consen 203 -GILVVEP 209 (288)
T ss_pred -cEEEEcC
Confidence 5556664
No 109
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.79 E-value=3.6e-08 Score=95.23 Aligned_cols=96 Identities=18% Similarity=0.293 Sum_probs=74.6
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC--CccEEEech----
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--PADAVVLKW---- 263 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--~~D~i~~~~---- 263 (307)
..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++ ..++++++.+|+++..+ .||+|++.-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999999 788888876 34689999999987554 499998732
Q ss_pred ----------hhccCCh----------hHHHHHHHHHHHhccCCCCCcEEEE
Q 037127 264 ----------ILHDWND----------EECVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 264 ----------vLh~~~~----------~~~~~~L~~~~~~L~p~~~gg~lli 295 (307)
++.+.|. +--.++++.+.+.|+| ||.+++
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~l 267 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKIIL 267 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEEE
Confidence 1111111 1234578889999998 887764
No 110
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.77 E-value=8.9e-08 Score=84.42 Aligned_cols=97 Identities=20% Similarity=0.243 Sum_probs=73.2
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCCCCC-----CccEEEechhhc--
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFEAIP-----PADAVVLKWILH-- 266 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~~~p-----~~D~i~~~~vLh-- 266 (307)
..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ....++++.+|+++..+ .+|+|++.=...
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 45899999999999999999999999999999 888888876 22336899999987432 489988763221
Q ss_pred ----cCChh------------------HHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 267 ----DWNDE------------------ECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 267 ----~~~~~------------------~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
..+++ -..++++.+.+.|+| ||++++.
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~---gG~l~l~ 215 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP---GGHLLVE 215 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 11111 124788888899998 8887754
No 111
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.76 E-value=6.6e-08 Score=83.27 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=82.9
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----------------cCCCeEEEecCCCCCCC-
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----------------DLANLKYVGGDMFEAIP- 254 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------------~~~rv~~~~~d~~~~~p- 254 (307)
.....+||..|||.|.-+..|+++ +.+++++|+ +..++.+.+ ...+|++.++|+|+-.+
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 455679999999999999999997 789999999 667777621 24578999999999211
Q ss_pred ---CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 255 ---PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 255 ---~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
.||+|+=+-.++-++.+...+..+.+++.|+| ||+++++....+
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi~l~~~ 159 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLITLEYP 159 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEEEEES-
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEEEEEcC
Confidence 59999999999999999999999999999999 899655554444
No 112
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.74 E-value=7.6e-08 Score=81.11 Aligned_cols=95 Identities=17% Similarity=0.309 Sum_probs=70.6
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecchHHHHhchhcCCCeEEEecCCCCC---------CC--CccEEEe
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDLPHVVNGLESDLANLKYVGGDMFEA---------IP--PADAVVL 261 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~---------~p--~~D~i~~ 261 (307)
..+..+|||+|||+|.++..+++.+ +..+++++|+.+.. . ..+++++.+|+.++ .+ .+|+|++
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---~--~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---P--IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---c--CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence 4567899999999999999999887 56789999995432 1 34688999998762 23 4999998
Q ss_pred chhhc---cCCh------hHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 262 KWILH---DWND------EECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 262 ~~vLh---~~~~------~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
....| .|.- +....+|+.++++|+| ||++++.
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~ 145 (188)
T TIGR00438 105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVK 145 (188)
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence 54322 1221 1235789999999998 8998875
No 113
>PHA03411 putative methyltransferase; Provisional
Probab=98.73 E-value=1e-07 Score=83.91 Aligned_cols=97 Identities=13% Similarity=0.124 Sum_probs=76.5
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCC-C-CccEEEechhhccCChhH-
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAI-P-PADAVVLKWILHDWNDEE- 272 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~-p-~~D~i~~~~vLh~~~~~~- 272 (307)
..+|||+|||+|.++..++++.+..+++++|+ +.+++.+++..++++++.+|+++.. . .+|+|++.-..++.+..+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence 46899999999999999999887789999999 8888888864568999999999843 2 599999977776544321
Q ss_pred -----------------HHHHHHHHHHhccCCCCCcEEEEE
Q 037127 273 -----------------CVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 273 -----------------~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
..++++.+...|+| +|.++++
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p---~G~~~~~ 182 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVP---TGSAGFA 182 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecC---CceEEEE
Confidence 13567777888888 6766554
No 114
>PTZ00146 fibrillarin; Provisional
Probab=98.72 E-value=1.9e-07 Score=83.15 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=71.8
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hH----HHHhchhcCCCeEEEecCCCCCC------CCccEEEe
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PH----VVNGLESDLANLKYVGGDMFEAI------PPADAVVL 261 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~----~~~~a~~~~~rv~~~~~d~~~~~------p~~D~i~~ 261 (307)
+.+..+|||+|||+|.++..+++... .-+++++|+ +. +++.++ ...+|.++.+|+..+. +.+|+|++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak-~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK-KRPNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence 46678999999999999999999873 458999998 44 334443 3468999999987642 24899988
Q ss_pred chhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 262 KWILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 262 ~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
.... ++ +...++.++++.||| ||+++|.
T Consensus 209 Dva~---pd-q~~il~~na~r~LKp---GG~~vI~ 236 (293)
T PTZ00146 209 DVAQ---PD-QARIVALNAQYFLKN---GGHFIIS 236 (293)
T ss_pred eCCC---cc-hHHHHHHHHHHhccC---CCEEEEE
Confidence 7742 33 345667789999999 9999983
No 115
>PLN02366 spermidine synthase
Probab=98.72 E-value=1e-07 Score=86.23 Aligned_cols=99 Identities=18% Similarity=0.153 Sum_probs=74.8
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---------cCCCeEEEecCCCC---CCC--CccEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---------DLANLKYVGGDMFE---AIP--PADAV 259 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~---~~p--~~D~i 259 (307)
+++++||+||||.|..+.++++..+-.+++++|+ +.|++.+++ ..+|++++.+|.++ ..+ .||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4578999999999999999997633457999999 778888877 14699999999754 332 59999
Q ss_pred EechhhccCChh--HHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 260 VLKWILHDWNDE--ECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 260 ~~~~vLh~~~~~--~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
++...-+.-+.. -...+++.+++.|+| ||.+++.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~p---gGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRP---GGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEC
Confidence 985433322221 135789999999999 8887653
No 116
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.71 E-value=1.6e-07 Score=85.45 Aligned_cols=99 Identities=14% Similarity=0.243 Sum_probs=74.3
Q ss_pred HHHhccccccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCC---CC
Q 037127 186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAI---PP 255 (307)
Q Consensus 186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~---p~ 255 (307)
+++.++ ..+..+|||||||+|.++..+++..+. .+++++|. +.+++.|++ ..+++.++.+|..+.. ..
T Consensus 72 ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 72 FMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 344444 456679999999999999999998864 47899999 788877765 3467999999987632 25
Q ss_pred ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
+|+|++...++..+ ..+.+.|+| ||++++..
T Consensus 150 fD~Ii~~~g~~~ip--------~~~~~~Lkp---gG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHhH--------HHHHHhcCC---CCEEEEEe
Confidence 99999876655433 345678998 89888743
No 117
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.69 E-value=7.7e-08 Score=78.51 Aligned_cols=101 Identities=18% Similarity=0.161 Sum_probs=75.2
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC--CC-CccEEEechhh-
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA--IP-PADAVVLKWIL- 265 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~--~p-~~D~i~~~~vL- 265 (307)
..+|||+|||+|.++..|++.-=.-..+++|. +..++.|+. ..+.|+|++.|+.+| .+ ++|+|+=...+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 34999999999999999998754445789998 667777665 456699999999995 23 58988766654
Q ss_pred ----c-cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 266 ----H-DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 266 ----h-~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
| +-++......+..+.+.|+| ||.++|.-..+
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~---~gifvItSCN~ 184 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSP---GGIFVITSCNF 184 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCC---CcEEEEEecCc
Confidence 3 22333335678889999998 89988875443
No 118
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.69 E-value=9.7e-07 Score=78.90 Aligned_cols=97 Identities=13% Similarity=0.179 Sum_probs=77.0
Q ss_pred CCeEEEecCCch--HHHHHH--HHHCC----CCeEEEecc-hHHHHhchh------------------------------
Q 037127 197 LNSLVDVGGATG--TVAKAI--AKAFP----NLECTDFDL-PHVVNGLES------------------------------ 237 (307)
Q Consensus 197 ~~~vlDvGgG~G--~~~~~l--~~~~p----~~~~~~~Dl-~~~~~~a~~------------------------------ 237 (307)
..+|...||++| -|+.++ .+..+ ++++++.|+ +.+++.|++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 478999999999 344433 34332 468999999 788888865
Q ss_pred ------cCCCeEEEecCCCC-CCC---CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 238 ------DLANLKYVGGDMFE-AIP---PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 238 ------~~~rv~~~~~d~~~-~~p---~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
...+|+|..+|+.+ +.| .+|+|+|++++.+++++...+++++++++|+| ||.+++-
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEEe
Confidence 01457999999998 443 59999999999999999889999999999999 8877653
No 119
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.68 E-value=6.6e-08 Score=82.38 Aligned_cols=98 Identities=17% Similarity=0.264 Sum_probs=71.5
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCC-----eEEEecCCCCCC--C-CccEEEechh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLAN-----LKYVGGDMFEAI--P-PADAVVLKWI 264 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~r-----v~~~~~d~~~~~--p-~~D~i~~~~v 264 (307)
.+.+.++|||||+|..++.++..|. ++++.|+ +.+++.+.+ ...+ .++...++.+-. + .+|+|++..+
T Consensus 32 ~~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CCcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 3445899999999988888888865 5899999 889999986 1111 122222222211 2 3999999999
Q ss_pred hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
+|-|+-+ ++.+.++++|++ +||.+.|.-+.
T Consensus 110 ~HWFdle---~fy~~~~rvLRk--~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 110 VHWFDLE---RFYKEAYRVLRK--DGGLIAVWNYN 139 (261)
T ss_pred HHhhchH---HHHHHHHHHcCC--CCCEEEEEEcc
Confidence 9977764 889999999987 37788887654
No 120
>PRK01581 speE spermidine synthase; Validated
Probab=98.68 E-value=1.4e-07 Score=86.21 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=76.2
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------------cCCCeEEEecCCCCC---CC-Ccc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------------DLANLKYVGGDMFEA---IP-PAD 257 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------------~~~rv~~~~~d~~~~---~p-~~D 257 (307)
.++++||+||||.|..+..+++..+..+++++|+ +.|++.|++ ..+|++++.+|..+- .+ .||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4577999999999999999998655678999999 888998884 257999999998862 22 599
Q ss_pred EEEechhhcc---CChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 258 AVVLKWILHD---WNDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 258 ~i~~~~vLh~---~~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
+|++...=.. ...--...+++.+++.|+| ||.+++..
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Qs 268 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTE---DGAFVCQS 268 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCC---CcEEEEec
Confidence 9998732110 0111235789999999999 88877763
No 121
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.67 E-value=1.4e-07 Score=84.11 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=76.4
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---------cCCCeEEEecCCCC---CCC-CccEEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---------DLANLKYVGGDMFE---AIP-PADAVV 260 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~---~~p-~~D~i~ 260 (307)
+++++||+||||+|..+..+++..+..+++++|+ +.+++.+++ ..+|++++.+|.++ ..+ .||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 4566999999999999999998766678999999 788888776 13689999999865 123 599999
Q ss_pred echhhccCChhH--HHHHHHHHHHhccCCCCCcEEEEE
Q 037127 261 LKWILHDWNDEE--CVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 261 ~~~vLh~~~~~~--~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
+...-+.-+... ...+++.+++.|+| ||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc
Confidence 876533222222 35789999999999 8888775
No 122
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.66 E-value=1.8e-07 Score=77.53 Aligned_cols=90 Identities=18% Similarity=0.340 Sum_probs=65.3
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCCC--c
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIPP--A 256 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p~--~ 256 (307)
+.+++.++ .....+|||||||+|.++..++++ ..+++++|+ +.+++.+++ ..++++++.+|+.+ +.+. +
T Consensus 3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence 34555555 456678999999999999999998 568999999 778888776 24689999999988 4443 7
Q ss_pred cEEEechhhccCChhHHHHHHHHHHH
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKE 282 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~ 282 (307)
|.++.. .-++... .++.++.+
T Consensus 79 d~vi~n-~Py~~~~----~~i~~~l~ 99 (169)
T smart00650 79 YKVVGN-LPYNIST----PILFKLLE 99 (169)
T ss_pred CEEEEC-CCcccHH----HHHHHHHh
Confidence 877654 4444443 44444444
No 123
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=2.9e-07 Score=82.33 Aligned_cols=97 Identities=25% Similarity=0.391 Sum_probs=74.2
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC-CccEEEechhh------
Q 037127 199 SLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP-PADAVVLKWIL------ 265 (307)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p-~~D~i~~~~vL------ 265 (307)
+|||+|||+|..+..+++++|++++++.|+ |..++.|++ ...++.++.+|++++.+ .||+|+++=.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 799999999999999999999999999999 888888876 22777788889999766 59988765311
Q ss_pred -------cc------CCh----hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 266 -------HD------WND----EECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 266 -------h~------~~~----~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
.+ +.. +-..+++..+.+.|+| |.++++|.-
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~----~g~l~le~g 239 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP----GGVLILEIG 239 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC----CcEEEEEEC
Confidence 01 111 1346788889999998 555666554
No 124
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.62 E-value=3.8e-07 Score=79.58 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=74.7
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---------CCCc
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---------IPPA 256 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---------~p~~ 256 (307)
..++++|||||||+|+.+..+++..| +.+++.+|. +..++.|++ ..++|+++.+|+.+- .+.|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 45678999999999999999998865 679999999 777887776 467999999999762 1259
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
|+|++-. +.+.-..++..+.+.|+| ||.|++-+
T Consensus 146 D~VfiDa-----~k~~y~~~~~~~~~ll~~---GG~ii~dn 178 (234)
T PLN02781 146 DFAFVDA-----DKPNYVHFHEQLLKLVKV---GGIIAFDN 178 (234)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCC---CeEEEEEc
Confidence 9998742 223345788999999998 77655533
No 125
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.61 E-value=5.8e-07 Score=82.50 Aligned_cols=101 Identities=15% Similarity=0.114 Sum_probs=75.3
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC--CccEEEechh
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP--PADAVVLKWI 264 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p--~~D~i~~~~v 264 (307)
..+..+|||+|||+|.++.+.+.. +.+++++|+ +.+++.++. ..+.+.+..+|+.+ +.+ .+|+|++.-.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 456678999999999999887664 678999999 778887665 22348899999987 443 4899998532
Q ss_pred hc-------cCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 265 LH-------DWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 265 Lh-------~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
.. +...+-..++|+.+++.|+| ||+++++-+.
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~~~~ 296 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYAVPT 296 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEEEcC
Confidence 21 11112246899999999998 9999887543
No 126
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.58 E-value=2.9e-07 Score=78.75 Aligned_cols=100 Identities=15% Similarity=0.261 Sum_probs=73.5
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC--
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP-- 254 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p-- 254 (307)
..++..++ +.+..+|||||||+|+++.-+++.... -+++.+|. +..++.|++ ...+|+++.+|.....+
T Consensus 62 a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 62 ARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 34556666 677889999999999999999988643 46899998 888888877 45689999999887444
Q ss_pred -CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 255 -PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 255 -~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
.||.|++.-.....|. ...+.|++ ||++++.
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~---gGrLV~p 171 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKP---GGRLVAP 171 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEE---EEEEEEE
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCC---CcEEEEE
Confidence 5999999887765543 25556898 8998874
No 127
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.58 E-value=3.3e-07 Score=87.03 Aligned_cols=102 Identities=15% Similarity=0.176 Sum_probs=76.8
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCC---CC--CccEEEe--
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEA---IP--PADAVVL-- 261 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~---~p--~~D~i~~-- 261 (307)
..+..+|||+|||+|..+..+++..++.+++++|. +.+++.+++ ..-+++++++|+.+. .+ .||.|++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 45567999999999999999999988789999999 788888766 333578999999862 22 4999984
Q ss_pred --ch--hh-------ccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 262 --KW--IL-------HDWNDEE-------CVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 262 --~~--vL-------h~~~~~~-------~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
+. ++ +.+..++ ..++|+++.+.|+| ||++++...
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvystc 373 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYATC 373 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeC
Confidence 22 11 1122221 24799999999999 999987764
No 128
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.57 E-value=6.4e-07 Score=81.84 Aligned_cols=98 Identities=16% Similarity=0.186 Sum_probs=71.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c--------------CCCeEEEecCCCCC-----C-
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D--------------LANLKYVGGDMFEA-----I- 253 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~--------------~~rv~~~~~d~~~~-----~- 253 (307)
+..+|||+|||.|+-+..-.+... -..+++|+ +..++.|++ . .-...|+.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 678999999999998887777643 37899999 667777765 1 12357788888752 1
Q ss_pred -C--CccEEEechhhcc-CC-hhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 254 -P--PADAVVLKWILHD-WN-DEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 254 -p--~~D~i~~~~vLh~-~~-~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
+ .||+|-|-..||+ |. .+.+..+|+++...|+| ||.++..-
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT~ 186 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGTT 186 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEEe
Confidence 2 4999999999998 44 45677799999999999 78777653
No 129
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.2e-06 Score=74.05 Aligned_cols=99 Identities=12% Similarity=0.217 Sum_probs=78.9
Q ss_pred HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC---C
Q 037127 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP---P 255 (307)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p---~ 255 (307)
.++..+. ++...+||+||||+|+.+.-+++.-. +++.+|. +..++.|++ ...+|.++++|-..-+| .
T Consensus 63 ~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 63 RMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 3445555 67789999999999999999999864 8999998 888888876 34569999999998544 5
Q ss_pred ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
||.|+..-..-..|+ . +.+.|++ ||+++|-.-
T Consensus 139 yD~I~Vtaaa~~vP~----~----Ll~QL~~---gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVPE----A----LLDQLKP---GGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccCCCCH----H----HHHhccc---CCEEEEEEc
Confidence 999999888876664 2 4456798 999998665
No 130
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.54 E-value=1.2e-06 Score=77.41 Aligned_cols=98 Identities=12% Similarity=0.194 Sum_probs=80.6
Q ss_pred CCCeEEEecCCch----HHHHHHHHHCC-----CCeEEEecc-hHHHHhchh----------------------------
Q 037127 196 GLNSLVDVGGATG----TVAKAIAKAFP-----NLECTDFDL-PHVVNGLES---------------------------- 237 (307)
Q Consensus 196 ~~~~vlDvGgG~G----~~~~~l~~~~p-----~~~~~~~Dl-~~~~~~a~~---------------------------- 237 (307)
+..+|.-.||++| ..+..+.+..| .+++++.|+ ..+++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 5789999999999 34455567775 478999999 788888864
Q ss_pred ------cCCCeEEEecCCCCCC--C-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 238 ------DLANLKYVGGDMFEAI--P-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 238 ------~~~rv~~~~~d~~~~~--p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
....|.|..+|.+++. + .+|+|+|++||-+|+.+.-.+++++.+..|+| ||.++|=
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~---gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP---GGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEEc
Confidence 1245899999999854 3 49999999999999999889999999999999 8888873
No 131
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.53 E-value=9.7e-07 Score=84.31 Aligned_cols=102 Identities=17% Similarity=0.239 Sum_probs=75.8
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC---CC-CccEEEec
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA---IP-PADAVVLK 262 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~---~p-~~D~i~~~ 262 (307)
..+..+|||+|||+|..+..+++.. ++.+++++|+ +..++.+++ ..+.|+++.+|+.+. ++ .||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 4556789999999999999999886 6779999999 777777765 234599999999762 33 59999874
Q ss_pred hh------hc-------cCChhH-------HHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 263 WI------LH-------DWNDEE-------CVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 263 ~v------Lh-------~~~~~~-------~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
-. +. .++..+ ...+|+++.+.|+| ||+++....
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvystc 380 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYSTC 380 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEcC
Confidence 21 11 122222 24689999999999 899886543
No 132
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.53 E-value=1e-06 Score=84.21 Aligned_cols=104 Identities=17% Similarity=0.253 Sum_probs=77.0
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC--CccEEEec--
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--PADAVVLK-- 262 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--~~D~i~~~-- 262 (307)
.....+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..++|+++.+|+.+..+ .||+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 34567999999999999999988764 458999999 788877765 33579999999987323 49999862
Q ss_pred --h--hh-------ccCChhHH-------HHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 263 --W--IL-------HDWNDEEC-------VKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 263 --~--vL-------h~~~~~~~-------~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
. ++ +.++.++. .++|+++.+.|+| ||+++......
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvystcs~ 380 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYATCSI 380 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCC
Confidence 1 11 22333322 3689999999999 89888877444
No 133
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=3.7e-07 Score=81.37 Aligned_cols=95 Identities=23% Similarity=0.322 Sum_probs=66.2
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeE----EEecCCCC-CC-CCccEEEechh
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLK----YVGGDMFE-AI-PPADAVVLKWI 264 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~----~~~~d~~~-~~-p~~D~i~~~~v 264 (307)
..++.++||+|||+|.++++.++... .+++++|+ |..++.+++ ..+.|. ....+... +. ..||+|+.+-
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI- 237 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI- 237 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-
Confidence 35788999999999999999999743 47999999 777777776 333333 22233333 12 1599876543
Q ss_pred hccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
|- + -.+++...+++.++| ||++++.-
T Consensus 238 LA---~-vl~~La~~~~~~lkp---gg~lIlSG 263 (300)
T COG2264 238 LA---E-VLVELAPDIKRLLKP---GGRLILSG 263 (300)
T ss_pred hH---H-HHHHHHHHHHHHcCC---CceEEEEe
Confidence 42 1 135888999999999 77777654
No 134
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.52 E-value=8.1e-07 Score=84.37 Aligned_cols=105 Identities=14% Similarity=0.160 Sum_probs=78.0
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC-C--C--CccEEEe
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA-I--P--PADAVVL 261 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~-~--p--~~D~i~~ 261 (307)
..+..+|||+|||+|..+..+++..++.+++++|. +..++.+++ ...++.+..+|.... . + .||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 45568999999999999999999988789999999 778877765 122455577787652 1 2 4999985
Q ss_pred c------hhhccCCh-------hH-------HHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 262 K------WILHDWND-------EE-------CVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 262 ~------~vLh~~~~-------~~-------~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
. .+++..|+ ++ -.++|+++.+.|+| ||++++....+.
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvystcs~~ 372 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYATCSVL 372 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence 2 35554433 11 25799999999999 999998866553
No 135
>PRK03612 spermidine synthase; Provisional
Probab=98.51 E-value=5.5e-07 Score=87.48 Aligned_cols=98 Identities=17% Similarity=0.284 Sum_probs=75.2
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh------------cCCCeEEEecCCCC---CCC-Cc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES------------DLANLKYVGGDMFE---AIP-PA 256 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~------------~~~rv~~~~~d~~~---~~p-~~ 256 (307)
+++++|||||||+|..+.++++ +|. .+++++|+ |.+++.+++ ..+|++++.+|.++ ..+ .|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4578999999999999999997 565 69999999 889998875 13699999999877 223 59
Q ss_pred cEEEechhhccCChh---HHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 257 DAVVLKWILHDWNDE---ECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 257 D~i~~~~vLh~~~~~---~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
|+|++...-+..+.. -...+++++++.|+| ||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEe
Confidence 999987443221111 124689999999999 8887764
No 136
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.51 E-value=1.1e-06 Score=74.48 Aligned_cols=95 Identities=17% Similarity=0.359 Sum_probs=69.2
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC----CC--CccEEEechhhc
Q 037127 199 SLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA----IP--PADAVVLKWILH 266 (307)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~----~p--~~D~i~~~~vLh 266 (307)
.+||||||.|.++..+++.+|+..++|+|+ ...+..+.+ ...++.++++|+..- ++ ..|-|.+...=.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 899999999999999999999999999999 555554433 678999999998871 23 366665554332
Q ss_pred cCChhH-------HHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 267 DWNDEE-------CVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 267 ~~~~~~-------~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
|+... ...+|..+++.|+| ||.|.+..
T Consensus 100 -WpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~T 133 (195)
T PF02390_consen 100 -WPKKRHHKRRLVNPEFLELLARVLKP---GGELYFAT 133 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred -CcccchhhhhcCCchHHHHHHHHcCC---CCEEEEEe
Confidence 44321 25799999999999 89887754
No 137
>PHA03412 putative methyltransferase; Provisional
Probab=98.50 E-value=9.7e-07 Score=76.13 Aligned_cols=90 Identities=12% Similarity=0.111 Sum_probs=69.7
Q ss_pred CCeEEEecCCchHHHHHHHHHC---CCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC-CccEEEechhhccCCh
Q 037127 197 LNSLVDVGGATGTVAKAIAKAF---PNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP-PADAVVLKWILHDWND 270 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~---p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~~~~ 270 (307)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.|++...++.++.+|+.. +.. .||+|+++=..+....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5699999999999999999875 3578999999 88888888755679999999986 333 5999988765553221
Q ss_pred ----------hHHHHHHHHHHHhccC
Q 037127 271 ----------EECVKILKKCKEAITS 286 (307)
Q Consensus 271 ----------~~~~~~L~~~~~~L~p 286 (307)
.-...+++++.+.+++
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~ 155 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQ 155 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCC
Confidence 1135688999986676
No 138
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.50 E-value=3.9e-07 Score=74.79 Aligned_cols=74 Identities=18% Similarity=0.320 Sum_probs=62.0
Q ss_pred EEecc-hHHHHhchh---c-----CCCeEEEecCCCC-CCC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCc
Q 037127 224 TDFDL-PHVVNGLES---D-----LANLKYVGGDMFE-AIP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIG 291 (307)
Q Consensus 224 ~~~Dl-~~~~~~a~~---~-----~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg 291 (307)
+++|. +.|++.|++ . ..+|+|+.+|+.+ +++ .+|++++..++|++++. ...|++++++||| ||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkp---GG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKP---GS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCc---Ce
Confidence 37898 889988864 1 3479999999987 555 39999999999999875 5899999999999 99
Q ss_pred EEEEEeeecCC
Q 037127 292 KVIIIDMMREN 302 (307)
Q Consensus 292 ~lli~e~~~~~ 302 (307)
+++|.|...++
T Consensus 76 ~l~i~d~~~~~ 86 (160)
T PLN02232 76 RVSILDFNKSN 86 (160)
T ss_pred EEEEEECCCCC
Confidence 99999987654
No 139
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.46 E-value=1.5e-06 Score=72.19 Aligned_cols=103 Identities=20% Similarity=0.203 Sum_probs=69.5
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh--------cCCCeEEEecCCCCCC------C-CccE
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES--------DLANLKYVGGDMFEAI------P-PADA 258 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~--------~~~rv~~~~~d~~~~~------p-~~D~ 258 (307)
..+.++||+||||+|..+..+++.++..+++.-|.+++++.++. ...++++...|..++. + .||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45678999999999999999999877789999999777776665 2578899998887632 2 4999
Q ss_pred EEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 259 VVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 259 i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
|+.+-++|+ ++....+++.+.+.+++ ++.+++.-..+.
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~---~~~vl~~~~~R~ 160 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKP---NGKVLLAYKRRR 160 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT----TTEEEEEE-S-
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCC---CCEEEEEeCEec
Confidence 999999984 55667899999999998 677777766653
No 140
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.46 E-value=7.2e-07 Score=80.07 Aligned_cols=93 Identities=18% Similarity=0.226 Sum_probs=64.0
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCC--CCccEEEechhh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAI--PPADAVVLKWIL 265 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~--p~~D~i~~~~vL 265 (307)
.+..+|||||||+|.+++..++... -+++++|+ |..++.+++ ..+++.+. ...+. ..||+|+.+-.-
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~---~~~~~~~~~~dlvvANI~~ 235 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVS---LSEDLVEGKFDLVVANILA 235 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES---CTSCTCCS-EEEEEEES-H
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE---EecccccccCCEEEECCCH
Confidence 4567999999999999999999743 47999999 777787776 45577653 12222 359988754332
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
+ -...++..+.+.|+| ||++++.-..
T Consensus 236 ~-----vL~~l~~~~~~~l~~---~G~lIlSGIl 261 (295)
T PF06325_consen 236 D-----VLLELAPDIASLLKP---GGYLILSGIL 261 (295)
T ss_dssp H-----HHHHHHHHCHHHEEE---EEEEEEEEEE
T ss_pred H-----HHHHHHHHHHHhhCC---CCEEEEcccc
Confidence 2 236788888999998 7777765433
No 141
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=3.3e-06 Score=73.01 Aligned_cols=106 Identities=18% Similarity=0.254 Sum_probs=87.2
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHH-HCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC-CC
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAK-AFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA-IP 254 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~-~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~-~p 254 (307)
..|+.... .....+|+|.|-|+|.++..|++ ..|.-+++.+|. ++..+.|++ ..++|++..+|+.+. .+
T Consensus 84 ~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 84 GYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 44555555 78899999999999999999997 567789999999 788888876 577899999999984 33
Q ss_pred -CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 255 -PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 255 -~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
.+|++++ |+|++- ..|.+++++|+| ||.+++.-++.+
T Consensus 162 ~~vDav~L-----Dmp~PW--~~le~~~~~Lkp---gg~~~~y~P~ve 199 (256)
T COG2519 162 EDVDAVFL-----DLPDPW--NVLEHVSDALKP---GGVVVVYSPTVE 199 (256)
T ss_pred cccCEEEE-----cCCChH--HHHHHHHHHhCC---CcEEEEEcCCHH
Confidence 5898876 567763 789999999999 999998877643
No 142
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.41 E-value=3e-06 Score=75.37 Aligned_cols=104 Identities=15% Similarity=0.236 Sum_probs=75.5
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-C--CCCccEEEech
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A--IPPADAVVLKW 263 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~--~p~~D~i~~~~ 263 (307)
..+..+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ...+|++...|... + .+.||.|++.-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 345678999999999999999988753 58999999 777777765 23568999999765 2 23599998631
Q ss_pred ------hh-------ccCChhHH-------HHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 264 ------IL-------HDWNDEEC-------VKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 264 ------vL-------h~~~~~~~-------~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
++ ..|..++. .++|+++.+.|+| ||+++.....+
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYstcs~ 202 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYSTCSL 202 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 11 12443322 4699999999998 89887665433
No 143
>PLN02672 methionine S-methyltransferase
Probab=98.39 E-value=1.6e-06 Score=89.53 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=55.5
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---c------------------CCCeEEEecCCCCCCC
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---D------------------LANLKYVGGDMFEAIP 254 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~------------------~~rv~~~~~d~~~~~p 254 (307)
..+|||||||+|..+..+++.+|+.+++++|+ +.+++.|+. . .+||+|+.+|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999999999999999 888888755 1 1489999999998543
Q ss_pred ----CccEEEec
Q 037127 255 ----PADAVVLK 262 (307)
Q Consensus 255 ----~~D~i~~~ 262 (307)
.+|+|+.+
T Consensus 199 ~~~~~fDlIVSN 210 (1082)
T PLN02672 199 DNNIELDRIVGC 210 (1082)
T ss_pred ccCCceEEEEEC
Confidence 38988764
No 144
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.39 E-value=2.2e-06 Score=72.99 Aligned_cols=112 Identities=13% Similarity=0.192 Sum_probs=68.1
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--------------cCCCeEEEecC
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--------------DLANLKYVGGD 248 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--------------~~~rv~~~~~d 248 (307)
..+++.+. +.....++|||||.|......+-.++--+++|+++ +...+.|.. ...++++..+|
T Consensus 32 ~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 32 SKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 44556565 56678999999999999998887776556999999 555444432 25678999999
Q ss_pred CCCC------CCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 249 MFEA------IPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 249 ~~~~------~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
|.++ +.++|+|++++.. |+++- ..-|.+....||+ |.+|+-...+.+..
T Consensus 110 fl~~~~~~~~~s~AdvVf~Nn~~--F~~~l-~~~L~~~~~~lk~---G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFVNNTC--FDPDL-NLALAELLLELKP---GARIISTKPFCPRR 164 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE--TT--T-HHH-HHHHHHHHTTS-T---T-EEEESS-SS-TT
T ss_pred ccccHhHhhhhcCCCEEEEeccc--cCHHH-HHHHHHHHhcCCC---CCEEEECCCcCCCC
Confidence 9983 2369999999986 56654 4445777778888 77877766665543
No 145
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.39 E-value=3.1e-06 Score=80.63 Aligned_cols=104 Identities=18% Similarity=0.177 Sum_probs=77.8
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC-----C-C-CccEE
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA-----I-P-PADAV 259 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~-----~-p-~~D~i 259 (307)
..+..+|||+|||+|..+..+++..+ ..+++++|+ +..++.+++ ...+|+++++|..+. . + .||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 45567999999999999999998864 468999999 778877765 335699999998762 1 1 48999
Q ss_pred Eec------hhhccCCh-------hH-------HHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 260 VLK------WILHDWND-------EE-------CVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 260 ~~~------~vLh~~~~-------~~-------~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
++. .+++..++ ++ -.++|+++.+.|+| ||+++.....+
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence 863 24443332 22 25889999999999 99988776443
No 146
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.39 E-value=3.2e-06 Score=80.26 Aligned_cols=104 Identities=15% Similarity=0.172 Sum_probs=76.1
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-C--CC-CccEEEec
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A--IP-PADAVVLK 262 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~--~p-~~D~i~~~ 262 (307)
..+..+|||+|||+|..+..+++.. ++.+++++|+ +..++.+++ ..+++++..+|..+ + .+ .||.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 4556799999999999999999886 4579999999 788887765 23468999999876 2 12 49999862
Q ss_pred h------hh-------ccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 263 W------IL-------HDWNDEE-------CVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 263 ~------vL-------h~~~~~~-------~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
- ++ +.++.++ -.++|.++.+.|+| ||+++.....+
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~ 369 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYSTCTV 369 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCC
Confidence 1 12 2233222 25789999999999 88876655544
No 147
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.39 E-value=2.7e-06 Score=75.36 Aligned_cols=83 Identities=16% Similarity=0.300 Sum_probs=63.5
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCCCcc
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIPPAD 257 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p~~D 257 (307)
.+.+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..++++++.+|+.+ +++.+|
T Consensus 18 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d 93 (258)
T PRK14896 18 VDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFN 93 (258)
T ss_pred HHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhce
Confidence 345555554 4566799999999999999999983 58999999 778888776 24689999999988 666788
Q ss_pred EEEechhhccCCh
Q 037127 258 AVVLKWILHDWND 270 (307)
Q Consensus 258 ~i~~~~vLh~~~~ 270 (307)
.|+.+-. |+.+.
T Consensus 94 ~Vv~NlP-y~i~s 105 (258)
T PRK14896 94 KVVSNLP-YQISS 105 (258)
T ss_pred EEEEcCC-cccCc
Confidence 7766544 44443
No 148
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.37 E-value=2.6e-06 Score=75.29 Aligned_cols=92 Identities=14% Similarity=0.268 Sum_probs=66.1
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCCCcc
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIPPAD 257 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p~~D 257 (307)
...++..++ ..+..+|||||||+|.++..++++.+ +++++|. +.+++.+++ ..++++++.+|+.+ +.+.+|
T Consensus 18 ~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d 93 (253)
T TIGR00755 18 IQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP 93 (253)
T ss_pred HHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence 345555555 55678999999999999999999986 4888998 778877776 24789999999988 444455
Q ss_pred --EEEechhhccCChhHHHHHHHHHHH
Q 037127 258 --AVVLKWILHDWNDEECVKILKKCKE 282 (307)
Q Consensus 258 --~i~~~~vLh~~~~~~~~~~L~~~~~ 282 (307)
.+++++.-++++. .++.++..
T Consensus 94 ~~~~vvsNlPy~i~~----~il~~ll~ 116 (253)
T TIGR00755 94 KQLKVVSNLPYNISS----PLIFKLLE 116 (253)
T ss_pred CcceEEEcCChhhHH----HHHHHHhc
Confidence 3455555454554 45555543
No 149
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.37 E-value=8.9e-07 Score=75.50 Aligned_cols=98 Identities=20% Similarity=0.282 Sum_probs=75.9
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC-------C--CCc
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA-------I--PPA 256 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~-------~--p~~ 256 (307)
..++++||+||+++|+.+..+++..| +.+++.+|. |...+.|++ ..+||+++.+|..+- . ..|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 45688999999999999999999987 589999999 777777776 468999999998751 1 259
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
|+|++-. +..+-...+..+.+.|+| |.++|+|.++
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~~----ggvii~DN~l 157 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLRP----GGVIIADNVL 157 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEEE----EEEEEEETTT
T ss_pred eEEEEcc-----cccchhhHHHHHhhhccC----CeEEEEcccc
Confidence 9998865 333456788889999998 5566666554
No 150
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.36 E-value=2.5e-06 Score=75.72 Aligned_cols=96 Identities=19% Similarity=0.249 Sum_probs=73.8
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecch-HHHHhchh----c---C----CCeEEEecCCCCC---------C
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLP-HVVNGLES----D---L----ANLKYVGGDMFEA---------I 253 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~-~~~~~a~~----~---~----~rv~~~~~d~~~~---------~ 253 (307)
++...++|+|||.|+-++.--++.- -..+++|+. ..+++|++ + . =.+.|+.+|.+.. .
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 4566789999999999887777632 268999994 45788876 1 1 1368899998761 2
Q ss_pred CCccEEEechhhcc-CC-hhHHHHHHHHHHHhccCCCCCcEEE
Q 037127 254 PPADAVVLKWILHD-WN-DEECVKILKKCKEAITSNSKIGKVI 294 (307)
Q Consensus 254 p~~D~i~~~~vLh~-~~-~~~~~~~L~~~~~~L~p~~~gg~ll 294 (307)
|.+|+|-|-.++|+ |. .+.+...|+++++.|+| ||.++
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~FI 234 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVFI 234 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEEE
Confidence 34999999999998 65 45788899999999999 77665
No 151
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.34 E-value=7.3e-06 Score=66.21 Aligned_cols=115 Identities=18% Similarity=0.210 Sum_probs=92.6
Q ss_pred hhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC------
Q 037127 180 RLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE------ 251 (307)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~------ 251 (307)
.+.++.+.+.++ +....-|+++|.|+|.++.+++++. +.-..+.++. ++......+..+.++++.||.+.
T Consensus 34 s~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~ 111 (194)
T COG3963 34 SILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLG 111 (194)
T ss_pred HHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHh
Confidence 344566667777 5677789999999999999998764 4556788887 77777776666777899999886
Q ss_pred CCC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 252 AIP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 252 ~~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
+.+ .+|.+++.-.+-.+|-...+++|+++..-|++ ||.++-+.+-
T Consensus 112 e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqftYg 158 (194)
T COG3963 112 EHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQFTYG 158 (194)
T ss_pred hcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEEEec
Confidence 223 49999999999999999999999999999998 8888877665
No 152
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.34 E-value=2.3e-06 Score=76.38 Aligned_cols=89 Identities=12% Similarity=0.194 Sum_probs=63.0
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCC-CCCCc--c
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE-AIPPA--D 257 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~-~~p~~--D 257 (307)
..+++.++ .....+|||||||+|.++..+++..+ +++++|. +.+++.+++ ..++++++.+|+.+ +.+.. +
T Consensus 32 ~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 32 DKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence 44555554 45667899999999999999999975 7899999 888888876 33789999999987 44433 4
Q ss_pred EEEechhhccCChhHHHHHHHHHH
Q 037127 258 AVVLKWILHDWNDEECVKILKKCK 281 (307)
Q Consensus 258 ~i~~~~vLh~~~~~~~~~~L~~~~ 281 (307)
.++ ++.=++.+. .++.++.
T Consensus 108 ~vv-~NlPY~iss----~ii~~~l 126 (272)
T PRK00274 108 KVV-ANLPYNITT----PLLFHLL 126 (272)
T ss_pred eEE-EeCCccchH----HHHHHHH
Confidence 444 443333332 4454444
No 153
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.33 E-value=8.1e-06 Score=71.61 Aligned_cols=103 Identities=22% Similarity=0.354 Sum_probs=67.3
Q ss_pred CCCeEEEecCCc---hHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCC--eEEEecCCCCC-----CC-------
Q 037127 196 GLNSLVDVGGAT---GTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLAN--LKYVGGDMFEA-----IP------- 254 (307)
Q Consensus 196 ~~~~vlDvGgG~---G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~r--v~~~~~d~~~~-----~p------- 254 (307)
+...+||||||- |..-....+..|+.+++-+|. |-++.+++. ..++ ..++.+|+.++ .|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 678999999993 344444456689999999999 888888887 2334 89999999983 12
Q ss_pred --CccEEEechhhccCCh-hHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 255 --PADAVVLKWILHDWND-EECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 255 --~~D~i~~~~vLh~~~~-~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
..=.+++..+||+.+| ++...+++.++++|.| |+.|.|....-.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~ish~t~d 194 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAISHATDD 194 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEEEEB-T
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEEecCCC
Confidence 2456899999999987 6788999999999999 888888877643
No 154
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.33 E-value=2.4e-06 Score=72.03 Aligned_cols=95 Identities=13% Similarity=0.238 Sum_probs=69.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCCCCC----CccEEEechhhc---
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFEAIP----PADAVVLKWILH--- 266 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~~~p----~~D~i~~~~vLh--- 266 (307)
.+.-|||||||+|..+..|... +...+++|+ |+|++.|.+ ..+ -.++-+|+-+..| .||-+|....+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~e-gdlil~DMG~GlpfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELE-GDLILCDMGEGLPFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhh-cCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence 3778999999999999888775 578999999 999999885 111 3466788888433 388877665542
Q ss_pred ------cCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 267 ------DWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 267 ------~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
+-|......++..++..|+. |++-++.
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~Q 159 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLKR---GARAVLQ 159 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhcc---CceeEEE
Confidence 22344556788889999998 7776653
No 155
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.29 E-value=4.6e-06 Score=79.29 Aligned_cols=131 Identities=18% Similarity=0.210 Sum_probs=80.3
Q ss_pred CccccccCCcHHHHHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHC----CCCeEEEecc-hH
Q 037127 156 SFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF----PNLECTDFDL-PH 230 (307)
Q Consensus 156 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~----p~~~~~~~Dl-~~ 230 (307)
..|+.+++++...+.|.+++... .....+.-. ...+.+.|+|||||+|-++...+++. ...+++.++- |.
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~a----l~D~~~~~~-~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~ 225 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEEA----LKDRVRKNS-YSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPN 225 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHHH----HHHHHTTS--SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTH
T ss_pred ccHhhHhcCHHHHHHHHHHHHHH----HHhhhhhcc-ccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHh
Confidence 44777888888888888776431 111222111 01136789999999999987766553 4578999998 43
Q ss_pred HHHhch----h--cCCCeEEEecCCCC-CCC-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEE
Q 037127 231 VVNGLE----S--DLANLKYVGGDMFE-AIP-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVI 294 (307)
Q Consensus 231 ~~~~a~----~--~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~ll 294 (307)
.+...+ . ..++|+++.+|+.+ ..| .+|+|+.=..-..-..+-....|..+.+.|+| +|.++
T Consensus 226 A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp---~Gi~I 294 (448)
T PF05185_consen 226 AVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKP---DGIMI 294 (448)
T ss_dssp HHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEE---EEEEE
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCC---CCEEe
Confidence 332222 2 57899999999999 566 59988655544333334445568888889998 65543
No 156
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.28 E-value=1e-06 Score=74.69 Aligned_cols=110 Identities=14% Similarity=0.101 Sum_probs=77.7
Q ss_pred HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEe-cCCCC--CCCCccE
Q 037127 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVG-GDMFE--AIPPADA 258 (307)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~-~d~~~--~~p~~D~ 258 (307)
.++...+ ...++++||+|||||..+..|-..- -+.+++|+ ..|++.|.+ ..+.+..-. .+|.. ....+|+
T Consensus 116 emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DL 191 (287)
T COG4976 116 EMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDL 191 (287)
T ss_pred HHHHhcc--CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccc
Confidence 3444444 3458999999999999999998774 35788999 778988875 222211111 12443 2235999
Q ss_pred EEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 259 VVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 259 i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
|...-||.+..+= ..++--+...|+| ||.+.+.-...+++
T Consensus 192 i~AaDVl~YlG~L--e~~~~~aa~~L~~---gGlfaFSvE~l~~~ 231 (287)
T COG4976 192 IVAADVLPYLGAL--EGLFAGAAGLLAP---GGLFAFSVETLPDD 231 (287)
T ss_pred hhhhhHHHhhcch--hhHHHHHHHhcCC---CceEEEEecccCCC
Confidence 9999999998875 4889999999998 88877665555544
No 157
>PRK04148 hypothetical protein; Provisional
Probab=98.25 E-value=1.6e-05 Score=62.74 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=62.8
Q ss_pred CCCeEEEecCCchH-HHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCC----CccEEEechhhccCC
Q 037127 196 GLNSLVDVGGATGT-VAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP----PADAVVLKWILHDWN 269 (307)
Q Consensus 196 ~~~~vlDvGgG~G~-~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p----~~D~i~~~~vLh~~~ 269 (307)
+..+++|||||+|. ++..|.+. +..++++|. |..++.+++ ..++++.+|+|++-+ ++|+|...+ |
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~--~~~~~v~dDlf~p~~~~y~~a~liysir-----p 86 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK--LGLNAFVDDLFNPNLEIYKNAKLIYSIR-----P 86 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH--hCCeEEECcCCCCCHHHHhcCCEEEEeC-----C
Confidence 45789999999996 77777765 679999999 777777763 357899999999644 589887765 5
Q ss_pred hhHHHHHHHHHHHhcc
Q 037127 270 DEECVKILKKCKEAIT 285 (307)
Q Consensus 270 ~~~~~~~L~~~~~~L~ 285 (307)
..|.+.-+.++++.+.
T Consensus 87 p~el~~~~~~la~~~~ 102 (134)
T PRK04148 87 PRDLQPFILELAKKIN 102 (134)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 5666777777877765
No 158
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=4.2e-06 Score=70.04 Aligned_cols=98 Identities=17% Similarity=0.272 Sum_probs=73.2
Q ss_pred HHhccccccCCCeEEEecCCchHHHHHHHHHC--CCCeEEEecc-hHHHHhchh---------------cCCCeEEEecC
Q 037127 187 IHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF--PNLECTDFDL-PHVVNGLES---------------DLANLKYVGGD 248 (307)
Q Consensus 187 ~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-~~~~~~a~~---------------~~~rv~~~~~d 248 (307)
++.++..+.+..++||||+|+|+++..++..- ++...+++|. |++++.+.+ ...++.++.||
T Consensus 73 le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGD 152 (237)
T KOG1661|consen 73 LEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGD 152 (237)
T ss_pred HHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCC
Confidence 33333345677899999999999999888554 3333489998 998888765 24678999999
Q ss_pred CCCC---CCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127 249 MFEA---IPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 249 ~~~~---~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli 295 (307)
...- ..+||.|.+.- .+.++.+++...|++ ||+++|
T Consensus 153 gr~g~~e~a~YDaIhvGA--------aa~~~pq~l~dqL~~---gGrlli 191 (237)
T KOG1661|consen 153 GRKGYAEQAPYDAIHVGA--------AASELPQELLDQLKP---GGRLLI 191 (237)
T ss_pred ccccCCccCCcceEEEcc--------CccccHHHHHHhhcc---CCeEEE
Confidence 9883 33699998872 234667788888898 898887
No 159
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.23 E-value=1.2e-05 Score=67.63 Aligned_cols=120 Identities=16% Similarity=0.223 Sum_probs=67.6
Q ss_pred ccCCcHHHHHHHHHHH----hchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhch
Q 037127 161 AGDEPKINNFFNEAMA----SDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLE 236 (307)
Q Consensus 161 ~~~~~~~~~~f~~~m~----~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~ 236 (307)
+..+|+....|++... .+..-..+.+++.+. ..++...|.|+|||.+..+..+.+ ..++.-+|+-..
T Consensus 34 f~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~----- 104 (219)
T PF05148_consen 34 FQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP----- 104 (219)
T ss_dssp HHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHC-TS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S-----
T ss_pred HHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-hcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC-----
Confidence 3456665555555443 332222455555443 123456899999999999966542 357899997321
Q ss_pred hcCCCeEEEecCCCC-CCC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 237 SDLANLKYVGGDMFE-AIP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 237 ~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
.++ ....|+-+ |++ .+|++++.-.|-- .+ ...+|+++.|+||+ ||.+.|.|-.
T Consensus 105 --n~~--Vtacdia~vPL~~~svDv~VfcLSLMG--Tn-~~~fi~EA~RvLK~---~G~L~IAEV~ 160 (219)
T PF05148_consen 105 --NPR--VTACDIANVPLEDESVDVAVFCLSLMG--TN-WPDFIREANRVLKP---GGILKIAEVK 160 (219)
T ss_dssp --STT--EEES-TTS-S--TT-EEEEEEES---S--S--HHHHHHHHHHHEEE---EEEEEEEEEG
T ss_pred --CCC--EEEecCccCcCCCCceeEEEEEhhhhC--CC-cHHHHHHHHheecc---CcEEEEEEec
Confidence 233 45688866 665 3899988877742 21 36899999999999 8999998854
No 160
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.23 E-value=7.7e-06 Score=73.66 Aligned_cols=89 Identities=17% Similarity=0.340 Sum_probs=66.1
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCCC
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIPP 255 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p~ 255 (307)
..+++... .....+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..++++++.+|+.+ +.+.
T Consensus 26 ~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 26 DKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 44555554 5566789999999999999999974 47899999 778887775 24789999999988 5567
Q ss_pred ccEEEechhhccCChhHHHHHH
Q 037127 256 ADAVVLKWILHDWNDEECVKIL 277 (307)
Q Consensus 256 ~D~i~~~~vLh~~~~~~~~~~L 277 (307)
+|+++ ++.=++++.+...++|
T Consensus 102 ~d~Vv-aNlPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCV-ANVPYQISSPLVFKLL 122 (294)
T ss_pred cCEEE-ecCCcccCcHHHHHHH
Confidence 88666 4555556665444444
No 161
>PLN02476 O-methyltransferase
Probab=98.23 E-value=1.2e-05 Score=71.42 Aligned_cols=99 Identities=12% Similarity=0.117 Sum_probs=76.2
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---C------CCc
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I------PPA 256 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~------p~~ 256 (307)
..++++|||||+++|+.+..+++..| +-+++.+|. ++..+.|++ ..++|+++.||..+. . ..|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45688999999999999999999875 567899999 777777766 567999999998762 1 259
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
|++++-. +...-..++..+.+.|+| ||.|++=+..+
T Consensus 196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~---GGvIV~DNvL~ 231 (278)
T PLN02476 196 DFAFVDA-----DKRMYQDYFELLLQLVRV---GGVIVMDNVLW 231 (278)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCC---CcEEEEecCcc
Confidence 9888754 344457889999999998 66655444433
No 162
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.20 E-value=9.6e-06 Score=69.42 Aligned_cols=100 Identities=17% Similarity=0.228 Sum_probs=80.3
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEe-cCCCC--C---CCCccEE
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVG-GDMFE--A---IPPADAV 259 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~-~d~~~--~---~p~~D~i 259 (307)
..++++||+||.+.|+.+..++...| +.+.+.+|. |+..+.|++ ..++|+++. +|..+ . .+.||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 46789999999999999999999999 788999999 888888887 578899988 58766 2 2359999
Q ss_pred EechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 260 VLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 260 ~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
++-. ....-..+|..+.+.|+| |.|+|+|.++..
T Consensus 137 FIDa-----dK~~yp~~le~~~~lLr~----GGliv~DNvl~~ 170 (219)
T COG4122 137 FIDA-----DKADYPEYLERALPLLRP----GGLIVADNVLFG 170 (219)
T ss_pred EEeC-----ChhhCHHHHHHHHHHhCC----CcEEEEeecccC
Confidence 8754 223335889999999998 667777776654
No 163
>PLN02823 spermine synthase
Probab=98.20 E-value=9.4e-06 Score=74.33 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=74.0
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---------cCCCeEEEecCCCCC---CC-CccEEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---------DLANLKYVGGDMFEA---IP-PADAVV 260 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~~---~p-~~D~i~ 260 (307)
.++++||.||||.|..+.++++..+..+++++|+ |.+++.+++ ..+|++++.+|.++- .+ .||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3567999999999999999999766678999999 889999887 147999999998872 22 599999
Q ss_pred echhhccCCh--h---HHHHHHH-HHHHhccCCCCCcEEEEE
Q 037127 261 LKWILHDWND--E---ECVKILK-KCKEAITSNSKIGKVIII 296 (307)
Q Consensus 261 ~~~vLh~~~~--~---~~~~~L~-~~~~~L~p~~~gg~lli~ 296 (307)
+--. ..+.. . -...+++ .+++.|+| ||.+++.
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~q 219 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVTQ 219 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCC---CcEEEEe
Confidence 8731 11100 0 0246787 89999998 7776553
No 164
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=8.5e-06 Score=67.34 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=54.6
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCCCccEEEech
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIPPADAVVLKW 263 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p~~D~i~~~~ 263 (307)
-..++|+|+|||||.++...+-..| .+++++|+ |+.++.+++ ...+|.|.+.|+.+-...+|.++++=
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNP 116 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNP 116 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECC
Confidence 3467899999999999999888765 48999999 888888876 56799999999987444466665543
No 165
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.19 E-value=2.4e-05 Score=69.91 Aligned_cols=103 Identities=17% Similarity=0.255 Sum_probs=73.7
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCC-eEEEecc-hHHHHhchhc---CC--CeEEEecCCCC---CCCCccEEEechh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNL-ECTDFDL-PHVVNGLESD---LA--NLKYVGGDMFE---AIPPADAVVLKWI 264 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~~---~~--rv~~~~~d~~~---~~p~~D~i~~~~v 264 (307)
-.+.+|||+|+|+|..+-++...++.+ +++++|. +.+++.++.. .. +......++.. +++..|+|+++++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~ 111 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYV 111 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehh
Confidence 346799999999999998888888854 5889998 7777776651 11 11111122221 3445799999999
Q ss_pred hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
|-..++++...+++++-+.+. +.|+|+|+-.+.
T Consensus 112 L~EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt~~ 144 (274)
T PF09243_consen 112 LNELPSAARAELVRSLWNKTA-----PVLVLVEPGTPA 144 (274)
T ss_pred hhcCCchHHHHHHHHHHHhcc-----CcEEEEcCCChH
Confidence 999988777778888877665 499999986553
No 166
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.15 E-value=1.4e-05 Score=71.32 Aligned_cols=98 Identities=14% Similarity=0.209 Sum_probs=78.7
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----c----CCCeEEEecCCCC---CCC-CccEEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----D----LANLKYVGGDMFE---AIP-PADAVV 260 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~----~~rv~~~~~d~~~---~~p-~~D~i~ 260 (307)
+.+++||-||||.|..+.++++..+--+++.+|+ |.|++.+++ . .+|++++.+|..+ ..+ .||+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 3457999999999999999999988789999999 899999987 2 5899999999887 344 599998
Q ss_pred echhhccCChh---HHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 261 LKWILHDWNDE---ECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 261 ~~~vLh~~~~~---~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
+-..=.. ... -...+++.|+++|++ +|.++..
T Consensus 155 ~D~tdp~-gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q 189 (282)
T COG0421 155 VDSTDPV-GPAEALFTEEFYEGCRRALKE---DGIFVAQ 189 (282)
T ss_pred EcCCCCC-CcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence 8654331 110 125899999999998 7777766
No 167
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.15 E-value=1.6e-05 Score=69.20 Aligned_cols=91 Identities=19% Similarity=0.315 Sum_probs=67.8
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCC-CccEEEechhhccCChhHH
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP-PADAVVLKWILHDWNDEEC 273 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p-~~D~i~~~~vLh~~~~~~~ 273 (307)
+..++||||.|.|..+..++..+.+ +++-+. +.|....++ ..++.+..+=+...+ .||+|.|-|+|-.-.++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~--kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P-- 167 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK--KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP-- 167 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh--CCCeEEehhhhhccCCceEEEeehhhhhccCCH--
Confidence 4578999999999999999999876 566687 667666663 233343333233233 59999999999766655
Q ss_pred HHHHHHHHHhccCCCCCcEEEE
Q 037127 274 VKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 274 ~~~L~~~~~~L~p~~~gg~lli 295 (307)
..+|+.++++|+| +|++++
T Consensus 168 ~~LL~~i~~~l~p---~G~lil 186 (265)
T PF05219_consen 168 LTLLRDIRRALKP---NGRLIL 186 (265)
T ss_pred HHHHHHHHHHhCC---CCEEEE
Confidence 5999999999999 676654
No 168
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.15 E-value=7.1e-06 Score=72.09 Aligned_cols=100 Identities=18% Similarity=0.261 Sum_probs=75.7
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---------cCCCeEEEecCCCC---C-CC-CccEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---------DLANLKYVGGDMFE---A-IP-PADAV 259 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~---~-~p-~~D~i 259 (307)
+.+++||=||+|.|..+.++++..+-.+++++|+ |.|++.+++ ..+|++++.+|... . .. .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4688999999999999999998776778999999 889998887 25799999999865 2 23 59999
Q ss_pred EechhhccCChhH--HHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 260 VLKWILHDWNDEE--CVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 260 ~~~~vLh~~~~~~--~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
++--.-...+... ...+++.+++.|+| +|.+++.-
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEEc
Confidence 8754432222211 25899999999998 77777654
No 169
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.14 E-value=1.5e-05 Score=68.84 Aligned_cols=96 Identities=20% Similarity=0.308 Sum_probs=69.8
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhc-hh----cCCCeEEEecCCCC---C-CC--CccEEEechhh
Q 037127 198 NSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGL-ES----DLANLKYVGGDMFE---A-IP--PADAVVLKWIL 265 (307)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a-~~----~~~rv~~~~~d~~~---~-~p--~~D~i~~~~vL 265 (307)
..+||||||.|.++..+|+++|+..++|+++ .+++..+ .. ..+++.++++|... . .+ ..|-|.+...=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 5799999999999999999999999999999 4444443 33 33489999999876 1 22 24555544322
Q ss_pred ccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 266 HDWNDEE-------CVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 266 h~~~~~~-------~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
-|+... ...+|+.+++.|+| ||.|.+..
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~aT 164 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFAT 164 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccC---CCEEEEEe
Confidence 144331 24689999999999 89887653
No 170
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.13 E-value=1.1e-05 Score=68.55 Aligned_cols=97 Identities=10% Similarity=0.123 Sum_probs=66.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCC---C-CccEEEechhh
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAI---P-PADAVVLKWIL 265 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~---p-~~D~i~~~~vL 265 (307)
...+|||+|||+|.++..++.+.. .+++++|. +..++.+++ ..++++++++|+++.. . .+|+|++.=..
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 356899999999999997666553 58999999 777777765 2458999999987632 2 48999877663
Q ss_pred ccCChhHHHHHHHHHHH--hccCCCCCcEEEEEeeec
Q 037127 266 HDWNDEECVKILKKCKE--AITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 266 h~~~~~~~~~~L~~~~~--~L~p~~~gg~lli~e~~~ 300 (307)
+. . -...+++.+.+ .++| +.++++|.-.
T Consensus 132 ~~-g--~~~~~l~~l~~~~~l~~----~~iv~ve~~~ 161 (199)
T PRK10909 132 RK-G--LLEETINLLEDNGWLAD----EALIYVESEV 161 (199)
T ss_pred CC-C--hHHHHHHHHHHCCCcCC----CcEEEEEecC
Confidence 22 1 12244454444 3676 4566666543
No 171
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.13 E-value=2.2e-05 Score=74.98 Aligned_cols=91 Identities=13% Similarity=0.151 Sum_probs=63.4
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC-----CC--CccEEE
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA-----IP--PADAVV 260 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~-----~p--~~D~i~ 260 (307)
..+..+|||+|||+|.++..+++.. .+++++|. +.+++.|++ ..++++|+.+|+.+. .+ .+|+|+
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 3455799999999999999999885 58999999 888888876 235799999998652 21 389887
Q ss_pred echhhccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127 261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli 295 (307)
+.= |-.....+++.+.+ ++| ++.++|
T Consensus 373 ~dP-----Pr~g~~~~~~~l~~-~~~---~~ivyv 398 (443)
T PRK13168 373 LDP-----PRAGAAEVMQALAK-LGP---KRIVYV 398 (443)
T ss_pred ECc-----CCcChHHHHHHHHh-cCC---CeEEEE
Confidence 632 21112244555544 466 454444
No 172
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.12 E-value=2.4e-05 Score=69.87 Aligned_cols=94 Identities=13% Similarity=0.167 Sum_probs=70.6
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCC-CCCC-ccEEEechhhccC
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIPP-ADAVVLKWILHDW 268 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p~-~D~i~~~~vLh~~ 268 (307)
.+.|||||||+|.++.-.+++. ..++..++-++|.+.|++ ..+||+.++|-+.+ ++|+ +|++|.--.-+.+
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL 256 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYML 256 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhh
Confidence 5689999999999998777764 357999999999999987 68999999999998 8885 9988765444443
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEE
Q 037127 269 NDEECVKILKKCKEAITSNSKIGKVI 294 (307)
Q Consensus 269 ~~~~~~~~L~~~~~~L~p~~~gg~ll 294 (307)
-++.-..---.+++.|+| .|+.+
T Consensus 257 ~NERMLEsYl~Ark~l~P---~GkMf 279 (517)
T KOG1500|consen 257 VNERMLESYLHARKWLKP---NGKMF 279 (517)
T ss_pred hhHHHHHHHHHHHhhcCC---CCccc
Confidence 343222223346689998 56654
No 173
>PRK00536 speE spermidine synthase; Provisional
Probab=98.11 E-value=2.4e-05 Score=68.96 Aligned_cols=89 Identities=13% Similarity=0.145 Sum_probs=69.8
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---------cCCCeEEEecCCCCCC-CCccEEEech
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---------DLANLKYVGGDMFEAI-PPADAVVLKW 263 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~~~-p~~D~i~~~~ 263 (307)
+.+++||=||||-|..++++++. |. +++.+|+ +.|++.+++ ..+|++++.. +.+.. ..||+|+.-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 56789999999999999999996 54 9999999 889988887 4689999873 22222 3599999875
Q ss_pred hhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
. .+ ..+.+.++++|+| ||.++..
T Consensus 148 ~----~~---~~fy~~~~~~L~~---~Gi~v~Q 170 (262)
T PRK00536 148 E----PD---IHKIDGLKRMLKE---DGVFISV 170 (262)
T ss_pred C----CC---hHHHHHHHHhcCC---CcEEEEC
Confidence 3 22 3678999999999 7776654
No 174
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.07 E-value=1.4e-05 Score=80.52 Aligned_cols=97 Identities=13% Similarity=0.133 Sum_probs=71.8
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cC-CCeEEEecCCCCC---CC-CccEEEech
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DL-ANLKYVGGDMFEA---IP-PADAVVLKW 263 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~-~rv~~~~~d~~~~---~p-~~D~i~~~~ 263 (307)
+.++|||+|||+|.++..+++. ...+++++|+ +.+++.+++ .. ++++++.+|+++. .+ .||+|++.=
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 4679999999999999999986 3347999999 788888876 22 5899999998762 23 599999842
Q ss_pred hh--------ccCC-hhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 264 IL--------HDWN-DEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 264 vL--------h~~~-~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
.- ..+. ...-..+++.+.+.|+| ||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 11 0011 12345788899999998 8877654
No 175
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.06 E-value=3.5e-05 Score=67.42 Aligned_cols=105 Identities=17% Similarity=0.237 Sum_probs=77.7
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHH-CCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC-C-
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA-FPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA-I- 253 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~-~- 253 (307)
..|+..++ +.++.+||+.|.|+|.++..|++. .|.-+++.+|. ++-.+.|++ ..++|++..+|+.++ +
T Consensus 30 ~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 30 SYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred HHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence 34555566 778899999999999999999964 57889999999 777777766 567899999999752 3
Q ss_pred ----CCccEEEechhhccCChhHHHHHHHHHHHhc-cCCCCCcEEEEEeeec
Q 037127 254 ----PPADAVVLKWILHDWNDEECVKILKKCKEAI-TSNSKIGKVIIIDMMR 300 (307)
Q Consensus 254 ----p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L-~p~~~gg~lli~e~~~ 300 (307)
..+|.+++ |+|++- ..|.++.++| ++ ||+++++-++.
T Consensus 108 ~~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~---gG~i~~fsP~i 149 (247)
T PF08704_consen 108 EELESDFDAVFL-----DLPDPW--EAIPHAKRALKKP---GGRICCFSPCI 149 (247)
T ss_dssp TT-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EE---EEEEEEEESSH
T ss_pred ccccCcccEEEE-----eCCCHH--HHHHHHHHHHhcC---CceEEEECCCH
Confidence 24898876 566653 6689999999 78 99999987765
No 176
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.05 E-value=2.6e-05 Score=68.41 Aligned_cols=98 Identities=14% Similarity=0.106 Sum_probs=75.8
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---C-------CC
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I-------PP 255 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~-------p~ 255 (307)
..++++||+||+++|+.+..+++..| +.+++.+|. ++..+.|++ ..++|+++.||..+- . ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 34678999999999999999999874 678999999 777777776 578999999998761 1 35
Q ss_pred ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
||+|++-.- ...-...+..+.+.|+| | .++|+|.++
T Consensus 157 fD~iFiDad-----K~~Y~~y~~~~l~ll~~---G-Gviv~DNvl 192 (247)
T PLN02589 157 FDFIFVDAD-----KDNYINYHKRLIDLVKV---G-GVIGYDNTL 192 (247)
T ss_pred ccEEEecCC-----HHHhHHHHHHHHHhcCC---C-eEEEEcCCC
Confidence 999988643 33346778888899998 4 556666554
No 177
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.05 E-value=2.5e-05 Score=70.95 Aligned_cols=97 Identities=11% Similarity=0.171 Sum_probs=72.0
Q ss_pred CCCeEEEecCCchHHHHHHHHHCC----CCeEEEecc-hHHHHhchh-c----CCCeEE--EecCCCCC---C-----C-
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFP----NLECTDFDL-PHVVNGLES-D----LANLKY--VGGDMFEA---I-----P- 254 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p----~~~~~~~Dl-~~~~~~a~~-~----~~rv~~--~~~d~~~~---~-----p- 254 (307)
....|||+|||+|.-...|++... ..+.+.+|+ .+.++.+.+ . .+.|++ +++|+.+. . +
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 445899999999988777766553 467999999 456666554 2 245655 78888662 2 1
Q ss_pred Cc-cEEEechhhccCChhHHHHHHHHHHH-hccCCCCCcEEEE
Q 037127 255 PA-DAVVLKWILHDWNDEECVKILKKCKE-AITSNSKIGKVII 295 (307)
Q Consensus 255 ~~-D~i~~~~vLh~~~~~~~~~~L~~~~~-~L~p~~~gg~lli 295 (307)
.. -++++.+.+.+++++++..+|+++++ .|+| |+.++|
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~---~d~lLi 195 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP---SDSFLI 195 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC---CCEEEE
Confidence 23 44567779999999999999999999 9998 676665
No 178
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.01 E-value=4.1e-05 Score=71.85 Aligned_cols=100 Identities=12% Similarity=0.050 Sum_probs=71.0
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cC-CCeEEEecCCCCC---C---C-CccEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DL-ANLKYVGGDMFEA---I---P-PADAV 259 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~-~rv~~~~~d~~~~---~---p-~~D~i 259 (307)
.+.++|||+|||+|.++...+.. +..+++.+|+ +.+++.+++ .. ++++++.+|+++. . . .||+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 34679999999999998876653 3458999999 788888776 22 4899999999872 1 2 49999
Q ss_pred EechhhccCCh-------hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 260 VLKWILHDWND-------EECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 260 ~~~~vLh~~~~-------~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
++.=.-..-+. ..-..+++.+.+.|+| ||.++.+..
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~sc 340 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTFSC 340 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEEeC
Confidence 97743211111 1124566678899998 888887543
No 179
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.01 E-value=2.1e-05 Score=70.99 Aligned_cols=96 Identities=16% Similarity=0.153 Sum_probs=71.9
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEechhh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKWIL 265 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~vL 265 (307)
-+.+.|||||||+|.++.-.+++. ..+++++|-.++++.+.+ ..+.|+++.|.+.+ ++| .+|+|+.-|.-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 456799999999999999999987 568999999998888877 56779999998887 555 59999888877
Q ss_pred ccCC-hhHHHHHHHHHHHhccCCCCCcEEE
Q 037127 266 HDWN-DEECVKILKKCKEAITSNSKIGKVI 294 (307)
Q Consensus 266 h~~~-~~~~~~~L~~~~~~L~p~~~gg~ll 294 (307)
|..- +.-.-.+|-.==+-|+| ||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~---~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKE---GGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCC---CceEc
Confidence 6532 22222334333467887 77654
No 180
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.97 E-value=5.6e-05 Score=68.96 Aligned_cols=65 Identities=15% Similarity=0.187 Sum_probs=52.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC---CC-CccEEEec
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA---IP-PADAVVLK 262 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~---~p-~~D~i~~~ 262 (307)
...+|||+|||+|.++..+++. ..+++++|. +.+++.+++ ..++++|+++|+.+. .. .+|+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 3578999999999999999985 468999999 888888875 236899999999762 22 48998876
No 181
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.94 E-value=8.6e-05 Score=64.22 Aligned_cols=119 Identities=18% Similarity=0.285 Sum_probs=77.4
Q ss_pred ccccCCcHHHHHHHHHHHh-chhh---hHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHh
Q 037127 159 EYAGDEPKINNFFNEAMAS-DARL---ATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNG 234 (307)
Q Consensus 159 ~~~~~~~~~~~~f~~~m~~-~~~~---~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~ 234 (307)
+.+..+|.....|++.... ...| ..+.|++.+. ..++...|-|+|||.+.++. .. .-.+..+||-.+
T Consensus 140 ~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik-~r~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a~--- 210 (325)
T KOG3045|consen 140 DLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIK-RRPKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVAV--- 210 (325)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-hCcCceEEEecccchhhhhh---cc--ccceeeeeeecC---
Confidence 3334566666666655542 2222 2455565554 13456789999999998886 11 235788887332
Q ss_pred chhcCCCeEEEecCCCC-CCC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 235 LESDLANLKYVGGDMFE-AIP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 235 a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
+-.++..||.+ |.+ .+|++++.-.|- .. ....++++++++|++ ||.++|.|-
T Consensus 211 ------~~~V~~cDm~~vPl~d~svDvaV~CLSLM--gt-n~~df~kEa~RiLk~---gG~l~IAEv 265 (325)
T KOG3045|consen 211 ------NERVIACDMRNVPLEDESVDVAVFCLSLM--GT-NLADFIKEANRILKP---GGLLYIAEV 265 (325)
T ss_pred ------CCceeeccccCCcCccCcccEEEeeHhhh--cc-cHHHHHHHHHHHhcc---CceEEEEeh
Confidence 23345688888 554 388887766663 22 135899999999999 999999885
No 182
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.94 E-value=2.6e-05 Score=70.05 Aligned_cols=78 Identities=15% Similarity=0.191 Sum_probs=60.9
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh-c--CCCeEEEecCCCC--C-C-
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES-D--LANLKYVGGDMFE--A-I- 253 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-~--~~rv~~~~~d~~~--~-~- 253 (307)
.++++..+. ..+...+||.+||.|.++..+++.+| +.+++++|. |.+++.+++ . .+|++++.+|+.+ . .
T Consensus 8 l~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 8 LDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 355666665 45567999999999999999999996 789999999 889988876 3 3699999999876 1 1
Q ss_pred ---CCccEEEec
Q 037127 254 ---PPADAVVLK 262 (307)
Q Consensus 254 ---p~~D~i~~~ 262 (307)
+.+|.|++-
T Consensus 86 ~~~~~vDgIl~D 97 (296)
T PRK00050 86 EGLGKVDGILLD 97 (296)
T ss_pred cCCCccCEEEEC
Confidence 146776553
No 183
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.91 E-value=6.5e-06 Score=77.47 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=69.1
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc----hHHHHhchhcCCCeEEEec---CCCCCCC--CccEEEechhh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL----PHVVNGLESDLANLKYVGG---DMFEAIP--PADAVVLKWIL 265 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl----~~~~~~a~~~~~rv~~~~~---d~~~~~p--~~D~i~~~~vL 265 (307)
.....+||||||+|.|+..++++ ++..+.+-. +..++.|-+ -.|--+.+ ...-|+| .||++.|++++
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale--RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~ 191 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE--RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCL 191 (506)
T ss_pred CceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh--cCcchhhhhhccccccCCccchhhhhccccc
Confidence 44578899999999999999998 544433322 334444432 11222222 2233677 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
..|...+ -.+|-.+-++|+| ||.++...+-..
T Consensus 192 i~W~~~~-g~~l~evdRvLRp---GGyfv~S~ppv~ 223 (506)
T PF03141_consen 192 IPWHPND-GFLLFEVDRVLRP---GGYFVLSGPPVY 223 (506)
T ss_pred ccchhcc-cceeehhhhhhcc---CceEEecCCccc
Confidence 9998876 3688899999999 899887766544
No 184
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.88 E-value=6.3e-05 Score=68.36 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=57.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-------cCCCeEEEe----cCCCCCC--C--CccEE
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-------DLANLKYVG----GDMFEAI--P--PADAV 259 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~----~d~~~~~--p--~~D~i 259 (307)
...++||||||+|.....++.+.++++++++|+ +..++.|+. ..++|++.. .+++... + .||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457899999999999888888889999999999 788888876 245788864 2444422 2 49999
Q ss_pred EechhhccCCh
Q 037127 260 VLKWILHDWND 270 (307)
Q Consensus 260 ~~~~vLh~~~~ 270 (307)
++.=..|.-.+
T Consensus 194 vcNPPf~~s~~ 204 (321)
T PRK11727 194 LCNPPFHASAA 204 (321)
T ss_pred EeCCCCcCcch
Confidence 99988875433
No 185
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.83 E-value=8.3e-05 Score=72.09 Aligned_cols=98 Identities=15% Similarity=0.241 Sum_probs=72.0
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc--hHHHHhchh----cCCCeEEEecCCCC---CCC--CccEEEechh
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL--PHVVNGLES----DLANLKYVGGDMFE---AIP--PADAVVLKWI 264 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl--~~~~~~a~~----~~~rv~~~~~d~~~---~~p--~~D~i~~~~v 264 (307)
....+||||||.|.++..+++.+|+..++|+|. +.+...+++ ...++.++++|+.. .+| ..|-+++...
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 356899999999999999999999999999999 434333333 45678888887642 345 3677766554
Q ss_pred hccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 265 LHDWNDEE-------CVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 265 Lh~~~~~~-------~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
=. |+... ...+|+.+++.|+| ||.|.+..
T Consensus 427 DP-WpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~T 462 (506)
T PRK01544 427 DP-WIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFAS 462 (506)
T ss_pred CC-CCCCCCccccccCHHHHHHHHHhcCC---CCEEEEEc
Confidence 32 54321 35789999999999 89888753
No 186
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.81 E-value=7.9e-05 Score=62.84 Aligned_cols=97 Identities=12% Similarity=0.129 Sum_probs=64.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---C--C-C-ccEEEe
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I--P-P-ADAVVL 261 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~--p-~-~D~i~~ 261 (307)
...+|||++||+|.++.+++.+... +++.+|. +..++.+++ ..++++++.+|.++. . . . +|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 3568999999999999999998653 7999999 677776665 345899999999652 1 1 2 566665
Q ss_pred chhhccCChhHHHHHHHHHHH--hccCCCCCcEEEEEeeec
Q 037127 262 KWILHDWNDEECVKILKKCKE--AITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 262 ~~vLh~~~~~~~~~~L~~~~~--~L~p~~~gg~lli~e~~~ 300 (307)
.=.... .....++..+.+ .+++ +.++|+|.-.
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~----~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILED----TVLIVVEEDR 161 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCC----CeEEEEEecC
Confidence 433321 112344444433 4555 6677777654
No 187
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.79 E-value=0.00011 Score=64.11 Aligned_cols=75 Identities=21% Similarity=0.440 Sum_probs=62.4
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP 254 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p 254 (307)
.+.++..-+ ...+..||+||.|||.++..+++. +.+++.+++ |.++....+ ...+++.+.+|+++ +.|
T Consensus 47 ~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 47 IDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence 455666655 677889999999999999999999 668999998 888887766 35789999999999 788
Q ss_pred CccEEEe
Q 037127 255 PADAVVL 261 (307)
Q Consensus 255 ~~D~i~~ 261 (307)
-+|.++.
T Consensus 123 ~fd~cVs 129 (315)
T KOG0820|consen 123 RFDGCVS 129 (315)
T ss_pred ccceeec
Confidence 8888766
No 188
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.78 E-value=0.00028 Score=61.14 Aligned_cols=98 Identities=13% Similarity=0.155 Sum_probs=61.3
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHh-chhcCCCeE-EEecCCCC--------C
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNG-LESDLANLK-YVGGDMFE--------A 252 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~-a~~~~~rv~-~~~~d~~~--------~ 252 (307)
..+++.+. ......++||+|||+|.++..+++. +..+++++|. +.++.. .+ ..+|+. +...|+.. +
T Consensus 64 ~~~l~~~~-~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~-~~~~v~~~~~~ni~~~~~~~~~~d 140 (228)
T TIGR00478 64 KEALEEFN-IDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLR-QDERVKVLERTNIRYVTPADIFPD 140 (228)
T ss_pred HHHHHhcC-CCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHh-cCCCeeEeecCCcccCCHhHcCCC
Confidence 34455544 1235678999999999999999997 3458999999 535543 44 455554 33445543 1
Q ss_pred CCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 253 IPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 253 ~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
++.+|+.+++..+ +|..+.++|++ +-.++++-
T Consensus 141 ~~~~DvsfiS~~~----------~l~~i~~~l~~---~~~~~L~K 172 (228)
T TIGR00478 141 FATFDVSFISLIS----------ILPELDLLLNP---NDLTLLFK 172 (228)
T ss_pred ceeeeEEEeehHh----------HHHHHHHHhCc---CeEEEEcC
Confidence 1236766666544 36677777876 44444443
No 189
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.72 E-value=9.5e-05 Score=70.42 Aligned_cols=92 Identities=18% Similarity=0.280 Sum_probs=63.6
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC-----C-C-CccEEE
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA-----I-P-PADAVV 260 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~-----~-p-~~D~i~ 260 (307)
..+..+|||+|||+|.++..+++.. .+++++|. +.+++.|++ ..++++|+.+|+.+. . . .+|+++
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 3455789999999999999999874 47999999 888888876 346899999998651 1 1 379888
Q ss_pred echhhccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127 261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli 295 (307)
+.=.=-.. ...+++.+.+ ++| ++.+++
T Consensus 368 ~dPPr~G~----~~~~l~~l~~-l~~---~~ivyv 394 (431)
T TIGR00479 368 LDPPRKGC----AAEVLRTIIE-LKP---ERIVYV 394 (431)
T ss_pred ECcCCCCC----CHHHHHHHHh-cCC---CEEEEE
Confidence 63221000 1345555443 676 555444
No 190
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.67 E-value=0.0002 Score=66.94 Aligned_cols=64 Identities=14% Similarity=0.211 Sum_probs=51.4
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC---C-CCccEEEec
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA---I-PPADAVVLK 262 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~---~-p~~D~i~~~ 262 (307)
..+|||+|||+|.++..++.. ..+++++|. +..++.+++ ..++++|..+|+.+. . ..+|+|++.
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D 307 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN 307 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence 468999999999999999965 468999999 888887776 235899999998652 1 248988876
No 191
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.66 E-value=0.00023 Score=62.12 Aligned_cols=68 Identities=15% Similarity=0.283 Sum_probs=51.4
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCC----CCCCC----CccEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDM----FEAIP----PADAV 259 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~----~~~~p----~~D~i 259 (307)
.+...++|+|||+|..+..++...|+.+++.+|. +..+..|.+ ..+|+..+..++ +.+.+ ..|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 3455899999999999999999999999999999 555655544 678888885544 44332 36766
Q ss_pred Eec
Q 037127 260 VLK 262 (307)
Q Consensus 260 ~~~ 262 (307)
+++
T Consensus 227 vsN 229 (328)
T KOG2904|consen 227 VSN 229 (328)
T ss_pred ecC
Confidence 554
No 192
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.66 E-value=8.1e-05 Score=65.36 Aligned_cols=96 Identities=15% Similarity=0.153 Sum_probs=73.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccEEEechhhccCChh
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAVVLKWILHDWNDE 271 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~~ 271 (307)
....++|+|||.|.++. .+|.+..++.|+ ...+.-+++ .+.......|+.+ |.+ .+|..+...++|+|...
T Consensus 45 ~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~-~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKR-SGGDNVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred CcceeeecccCCcccCc----CCCcceeeecchhhhhcccccc-CCCceeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 46789999999998873 348888999999 566666663 2222455578887 544 49999999999998754
Q ss_pred -HHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 272 -ECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 272 -~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
...++|+++.+.++| ||..+|.-.-
T Consensus 120 ~RR~~~l~e~~r~lrp---gg~~lvyvwa 145 (293)
T KOG1331|consen 120 ERRERALEELLRVLRP---GGNALVYVWA 145 (293)
T ss_pred HHHHHHHHHHHHHhcC---CCceEEEEeh
Confidence 557899999999999 8987776443
No 193
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.58 E-value=0.00016 Score=60.38 Aligned_cols=100 Identities=14% Similarity=0.233 Sum_probs=67.7
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------------cCCCeEEEecCCCCCCCC-ccEEEec
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------------DLANLKYVGGDMFEAIPP-ADAVVLK 262 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------------~~~rv~~~~~d~~~~~p~-~D~i~~~ 262 (307)
.-.++|||||.|.++..|...||+.-++|+++ -.|.+..++ ...++.....+.+.-.|+ +.--.++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 34689999999999999999999999999998 444443332 234566776666664553 2222333
Q ss_pred hhhccCChhH-----------HHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 263 WILHDWNDEE-----------CVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 263 ~vLh~~~~~~-----------~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
-..+.+||+. +..++.+..-.|++ ||.++.+.-+
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~ytitDv 185 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTITDV 185 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEEeeH
Confidence 3333344331 24678888888998 8998877544
No 194
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.53 E-value=0.00032 Score=58.77 Aligned_cols=89 Identities=19% Similarity=0.297 Sum_probs=66.7
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEecc-hH---HHHhchh--cCCCeEEEecCCCC-CCC-CccEEEechhhccCCh
Q 037127 199 SLVDVGGATGTVAKAIAKAFPNLECTDFDL-PH---VVNGLES--DLANLKYVGGDMFE-AIP-PADAVVLKWILHDWND 270 (307)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~---~~~~a~~--~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~~~~ 270 (307)
+++|||+|.|.=+..++=.+|+++++.+|. .. .++.+.. ..++++++++.+.+ ..+ .||+++++-+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 899999999999999999999999999998 33 2333332 46789999998887 333 599888887653
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 271 EECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 271 ~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
...++.-+...+++ ||+++..
T Consensus 127 --l~~l~~~~~~~l~~---~G~~l~~ 147 (184)
T PF02527_consen 127 --LDKLLELARPLLKP---GGRLLAY 147 (184)
T ss_dssp --HHHHHHHHGGGEEE---EEEEEEE
T ss_pred --HHHHHHHHHHhcCC---CCEEEEE
Confidence 23777888888888 8888765
No 195
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00077 Score=59.21 Aligned_cols=83 Identities=12% Similarity=0.286 Sum_probs=61.4
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCCC--
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIPP-- 255 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p~-- 255 (307)
.+.+++... ......|++||+|.|.++..|+++.. +++++++ +..++..++ ..++++++.+|+++ ++|.
T Consensus 19 ~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc
Confidence 466676665 45578999999999999999999955 5777787 667777766 46899999999998 6663
Q ss_pred -ccEEEechhhccCCh
Q 037127 256 -ADAVVLKWILHDWND 270 (307)
Q Consensus 256 -~D~i~~~~vLh~~~~ 270 (307)
++ .+.++.=|+.+.
T Consensus 95 ~~~-~vVaNlPY~Iss 109 (259)
T COG0030 95 QPY-KVVANLPYNISS 109 (259)
T ss_pred CCC-EEEEcCCCcccH
Confidence 33 344444444544
No 196
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=97.46 E-value=8.6e-05 Score=48.72 Aligned_cols=46 Identities=28% Similarity=0.565 Sum_probs=39.8
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (307)
+.|+++|...+++.|+.|||+++|+ +...+.|+|..|...|+++++
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl---~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGL---PKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCcCeecC
Confidence 3467778876677899999999999 678999999999999999986
No 197
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00012 Score=65.80 Aligned_cols=103 Identities=18% Similarity=0.323 Sum_probs=70.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCe-EEEecchHHHHhchh------cCCCeEEEecCCCC---CCCCccEEEechhh
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLE-CTDFDLPHVVNGLES------DLANLKYVGGDMFE---AIPPADAVVLKWIL 265 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~---~~p~~D~i~~~~vL 265 (307)
.+++|||||-|.|.-+-++-.-+|+++ +++++.++.+...-. ...+......|+.. ++|..|.|.+.-++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 357799999999999999999999985 677777444433322 22233333344443 46666776666555
Q ss_pred cc----CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 266 HD----WNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 266 h~----~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
|. =...+....++++-..+.| ||.++|+|.--|
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~---gg~lVivErGtp 229 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAP---GGHLVIVERGTP 229 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccC---CCeEEEEeCCCc
Confidence 54 3334455588999999998 999999997544
No 198
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.43 E-value=0.00034 Score=59.33 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=64.6
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCC--CCccEEEechh
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAI--PPADAVVLKWI 264 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~--p~~D~i~~~~v 264 (307)
..+..+|+|.-||.|.|+..+++..+..+++..|+ |..++.+++ ..++|....+|..+-. ..+|-|+|...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 34577999999999999999999888889999999 777777665 6788999999998733 24897777543
Q ss_pred hccCChhHHHHHHHHHHHhccCCCCCcEE
Q 037127 265 LHDWNDEECVKILKKCKEAITSNSKIGKV 293 (307)
Q Consensus 265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~l 293 (307)
.. +..+|..+.+.+++ ||.+
T Consensus 179 -----~~-~~~fl~~~~~~~~~---~g~i 198 (200)
T PF02475_consen 179 -----ES-SLEFLDAALSLLKE---GGII 198 (200)
T ss_dssp -----SS-GGGGHHHHHHHEEE---EEEE
T ss_pred -----HH-HHHHHHHHHHHhcC---CcEE
Confidence 22 24788888899997 6654
No 199
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.42 E-value=0.00026 Score=60.25 Aligned_cols=94 Identities=18% Similarity=0.296 Sum_probs=68.3
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCC--eEEEecCCCC-CCC--CccEEEechhhcc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLAN--LKYVGGDMFE-AIP--PADAVVLKWILHD 267 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~r--v~~~~~d~~~-~~p--~~D~i~~~~vLh~ 267 (307)
+....++|||||.|.....|..+.-+ +.+.+|. -.|++.++. ..+. ++...+|=.. ++. .+|+++.+..+|
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~ve-kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslH- 148 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVE-KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLH- 148 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchh-heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhh-
Confidence 34568999999999999999988532 6788888 678887775 2233 3444454333 344 499999999998
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEE
Q 037127 268 WNDEECVKILKKCKEAITSNSKIGKVI 294 (307)
Q Consensus 268 ~~~~~~~~~L~~~~~~L~p~~~gg~ll 294 (307)
|.++ ...-+.+|+.+||| +|.++
T Consensus 149 W~Nd-LPg~m~~ck~~lKP---Dg~Fi 171 (325)
T KOG2940|consen 149 WTND-LPGSMIQCKLALKP---DGLFI 171 (325)
T ss_pred hhcc-CchHHHHHHHhcCC---Cccch
Confidence 6654 35678899999999 66543
No 200
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.37 E-value=0.00063 Score=61.71 Aligned_cols=94 Identities=20% Similarity=0.390 Sum_probs=72.8
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCC-eEEEecc-hHHHHhchh------------cCCCeEEEecCCCCCCC----Cc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNL-ECTDFDL-PHVVNGLES------------DLANLKYVGGDMFEAIP----PA 256 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~------------~~~rv~~~~~d~~~~~p----~~ 256 (307)
++..++|-+|||.|..++++++ ||+. +++.+|+ |.|++.++. ..+|++.+..|.++-.. .|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4678999999999999999988 7854 7999999 999998874 47899999999998321 47
Q ss_pred cEEEechhhccCChhH--------HHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 257 DAVVLKWILHDWNDEE--------CVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~--------~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
|.+|.. ++|+. ...+-+-+++.|++ +|.+++..
T Consensus 367 D~vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e---~Gl~VvQa 407 (508)
T COG4262 367 DVVIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAE---TGLMVVQA 407 (508)
T ss_pred cEEEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCc---CceEEEec
Confidence 877653 33332 24566778888998 78777754
No 201
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.33 E-value=0.00017 Score=58.91 Aligned_cols=64 Identities=22% Similarity=0.370 Sum_probs=47.0
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---CC--C-ccEEEech
Q 037127 198 NSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---IP--P-ADAVVLKW 263 (307)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~p--~-~D~i~~~~ 263 (307)
..|+|+-||.|.-++++++.+. +++.+|+ |.-++.++. ..+||.|+++|+++- +. . +|+|+++=
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 3699999999999999999965 6899999 777777776 477999999999872 22 2 79888753
No 202
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.32 E-value=0.00031 Score=58.63 Aligned_cols=105 Identities=19% Similarity=0.210 Sum_probs=62.0
Q ss_pred HHHHHhcccc-ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecchHHHHhchhcCCCeEEEecCCCCC---------
Q 037127 184 RVVIHKCKNV-FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDLPHVVNGLESDLANLKYVGGDMFEA--------- 252 (307)
Q Consensus 184 ~~~~~~~~~~-~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~--------- 252 (307)
.++.+.++.. ..+..++||+||++|.|+..++++. +..+++++|+...- ....+.++.+|+.++
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----~~~~~~~i~~d~~~~~~~~~i~~~ 84 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----PLQNVSFIQGDITNPENIKDIRKL 84 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----S-TTEEBTTGGGEEEEHSHHGGGS
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----cccceeeeecccchhhHHHhhhhh
Confidence 3455555511 1245899999999999999999987 67899999995441 223455555665431
Q ss_pred C----CCccEEEechhhc---c--CCh----hHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 253 I----PPADAVVLKWILH---D--WND----EECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 253 ~----p~~D~i~~~~vLh---~--~~~----~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
. ..+|+|++-.... + .+. +-+...|.-+.+.|++ ||.+++-
T Consensus 85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~---gG~~v~K 138 (181)
T PF01728_consen 85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKP---GGTFVIK 138 (181)
T ss_dssp HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCT---TEEEEEE
T ss_pred ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC---CCEEEEE
Confidence 1 2489887766221 1 111 1233444445566888 8876653
No 203
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.0018 Score=53.27 Aligned_cols=101 Identities=15% Similarity=0.321 Sum_probs=69.1
Q ss_pred CCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCC--CCccEEEechhhc--
Q 037127 197 LNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAI--PPADAVVLKWILH-- 266 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~--p~~D~i~~~~vLh-- 266 (307)
..-+++||||+|..+..|++.. |+......|+ |+.++...+ ...++..++.|+...+ ...|+.+++-..-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 6789999999999999887664 7788899999 777766444 4556778888887732 2477777665332
Q ss_pred ------------cCC-----hhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 267 ------------DWN-----DEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 267 ------------~~~-----~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
-|. .+-..++|..+-..|.| .|.++++-...
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp---~Gv~Ylv~~~~ 171 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSP---RGVFYLVALRA 171 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCc---CceEEeeehhh
Confidence 122 11123566667777777 78888775443
No 204
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.30 E-value=0.0011 Score=62.04 Aligned_cols=91 Identities=19% Similarity=0.138 Sum_probs=70.0
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC--C-CCCccEEEechhhcc
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE--A-IPPADAVVLKWILHD 267 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~--~-~p~~D~i~~~~vLh~ 267 (307)
..+|||++||+|.++..++...+..++++.|. |..++.+++ ..+.+++..+|... . ...||+|++.=
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 35899999999999999999887668999999 788887776 24457788999865 2 23599998843
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 268 WNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
+... ..+|..+.+.+++ ||.++|.
T Consensus 134 ~Gs~--~~~l~~al~~~~~---~gilyvS 157 (382)
T PRK04338 134 FGSP--APFLDSAIRSVKR---GGLLCVT 157 (382)
T ss_pred CCCc--HHHHHHHHHHhcC---CCEEEEE
Confidence 1222 4678887788888 8888887
No 205
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.30 E-value=0.0011 Score=53.00 Aligned_cols=85 Identities=24% Similarity=0.352 Sum_probs=59.2
Q ss_pred ccCCCeEEEecCCchHHHHHHHHH----CCCCeEEEecc-hHHHHhchh--------cCCCeEEEecCCCCC--CCCccE
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKA----FPNLECTDFDL-PHVVNGLES--------DLANLKYVGGDMFEA--IPPADA 258 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~Dl-~~~~~~a~~--------~~~rv~~~~~d~~~~--~p~~D~ 258 (307)
..+..+|+|+|||.|+++..|+.. .++++++++|. +..++.+.+ ...++++..+++... ....++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 356789999999999999999982 27889999998 666666654 236677777776652 224666
Q ss_pred EEechhhccCChhHHHHHHHHHHH
Q 037127 259 VVLKWILHDWNDEECVKILKKCKE 282 (307)
Q Consensus 259 i~~~~vLh~~~~~~~~~~L~~~~~ 282 (307)
++--|.-=+.++ .+|+...+
T Consensus 103 ~vgLHaCG~Ls~----~~l~~~~~ 122 (141)
T PF13679_consen 103 LVGLHACGDLSD----RALRLFIR 122 (141)
T ss_pred EEEeecccchHH----HHHHHHHH
Confidence 666555544544 55555544
No 206
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.30 E-value=0.00054 Score=58.14 Aligned_cols=88 Identities=18% Similarity=0.261 Sum_probs=65.8
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEecCCCC-CCC-----CccEEEechhhccCCh
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFE-AIP-----PADAVVLKWILHDWND 270 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~-~~p-----~~D~i~~~~vLh~~~~ 270 (307)
..++|||||=+...... .++-..++-+||.+. .-.+...||++ |+| .||+|.++-||.+.|+
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~---------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~ 119 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ---------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPD 119 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC---------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCC
Confidence 46899999975543322 355667899998442 12355789988 666 3999999999999996
Q ss_pred h-HHHHHHHHHHHhccCCCCCcE-----EEEEeee
Q 037127 271 E-ECVKILKKCKEAITSNSKIGK-----VIIIDMM 299 (307)
Q Consensus 271 ~-~~~~~L~~~~~~L~p~~~gg~-----lli~e~~ 299 (307)
+ +.-+.|+++++.|+| +|. ++|+-+.
T Consensus 120 p~~RG~Ml~r~~~fL~~---~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 120 PKQRGEMLRRAHKFLKP---PGLSLFPSLFLVLPL 151 (219)
T ss_pred HHHHHHHHHHHHHHhCC---CCccCcceEEEEeCc
Confidence 5 567899999999998 677 7777543
No 207
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.29 E-value=0.0013 Score=58.45 Aligned_cols=96 Identities=14% Similarity=0.275 Sum_probs=68.1
Q ss_pred hHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCCC-
Q 037127 182 ATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIPP- 255 (307)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p~- 255 (307)
..+.+++.++ ......|||||+|.|.++..|++.. -+++++|. +..++..++ ..++++++.+|+++ +.+.
T Consensus 18 ~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 18 IADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh
Confidence 3456666666 5577899999999999999999997 67899998 777777776 46899999999998 3332
Q ss_pred ---ccEEEechhhccCChhHHHHHHHHHHHhcc
Q 037127 256 ---ADAVVLKWILHDWNDEECVKILKKCKEAIT 285 (307)
Q Consensus 256 ---~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~ 285 (307)
-.+.++++.=++. ...++.++...-+
T Consensus 94 ~~~~~~~vv~NlPy~i----s~~il~~ll~~~~ 122 (262)
T PF00398_consen 94 LKNQPLLVVGNLPYNI----SSPILRKLLELYR 122 (262)
T ss_dssp CSSSEEEEEEEETGTG----HHHHHHHHHHHGG
T ss_pred hcCCceEEEEEecccc----hHHHHHHHhhccc
Confidence 3344555433322 2467777766433
No 208
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.0023 Score=54.18 Aligned_cols=106 Identities=18% Similarity=0.211 Sum_probs=72.7
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecchHHHHhchhcCCCeEEEecCCCCC---------C
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDLPHVVNGLESDLANLKYVGGDMFEA---------I 253 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~---------~ 253 (307)
.++.+.+. .+.+..+|+|+|+-+|.+++.+++.... .+++++|+-++- ..+.|.++.+|++.+ .
T Consensus 34 ~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----~~~~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 34 LELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----PIPGVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred HHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----cCCCceEEeeeccCccHHHHHHHHc
Confidence 45666664 5778899999999999999999887654 468999985543 334599999999983 2
Q ss_pred CC--ccEEEech---hhccCC------hhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 254 PP--ADAVVLKW---ILHDWN------DEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 254 p~--~D~i~~~~---vLh~~~------~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
+. +|+|++-. +--.|. -.-+...+.-+.+.|+| ||.+++-.+
T Consensus 108 ~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~---~G~fv~K~f 160 (205)
T COG0293 108 GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP---GGSFVAKVF 160 (205)
T ss_pred CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC---CCeEEEEEE
Confidence 22 58887332 222222 22344556667778898 787776544
No 209
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.24 E-value=0.0014 Score=58.23 Aligned_cols=97 Identities=13% Similarity=0.235 Sum_probs=58.5
Q ss_pred CCCeEEEecCCch-HHHHHHHHHC-CCCeEEEecc-hHHHHhchh-------cCCCeEEEecCCCC---CCCCccEEEec
Q 037127 196 GLNSLVDVGGATG-TVAKAIAKAF-PNLECTDFDL-PHVVNGLES-------DLANLKYVGGDMFE---AIPPADAVVLK 262 (307)
Q Consensus 196 ~~~~vlDvGgG~G-~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~d~~~---~~p~~D~i~~~ 262 (307)
.+++|+=||||.= ..+..+++.+ ++..++++|. |..++.+++ ...+++|+.+|..+ +...||+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 4569999999965 5566666554 6788999999 778887766 47899999999876 24479999887
Q ss_pred hhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 263 WILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 263 ~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
-..- .+.++-.++|.++.+.|+| |.+|++-
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~---ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAP---GARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-T---TSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCC---CcEEEEe
Confidence 7664 3333336999999999998 6766653
No 210
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.20 E-value=0.0021 Score=54.93 Aligned_cols=69 Identities=23% Similarity=0.342 Sum_probs=54.0
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hH---HHHhchh--cCCCeEEEecCCCC--CCCC-ccEEEechhh
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PH---VVNGLES--DLANLKYVGGDMFE--AIPP-ADAVVLKWIL 265 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~---~~~~a~~--~~~rv~~~~~d~~~--~~p~-~D~i~~~~vL 265 (307)
.++++|||.|.|.=+.-++=.+|+++++.+|. .. .++.+.. ..++++++++-+.+ ..+. ||++.++-+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc
Confidence 68999999999999999999999999999997 33 3444333 57789999998776 2335 9988776543
No 211
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.18 E-value=0.0014 Score=52.23 Aligned_cols=53 Identities=21% Similarity=0.309 Sum_probs=43.0
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC
Q 037127 199 SLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE 251 (307)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~ 251 (307)
+++|||||.|.++..+++.+|..+++++|. |.+.+.+++ ...++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999999 777776665 22457777766554
No 212
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=97.15 E-value=0.0046 Score=55.41 Aligned_cols=99 Identities=23% Similarity=0.395 Sum_probs=74.6
Q ss_pred CCeEEEecCCchHHHHHHHHHC--------------------CCCeEEEecc---hHHHHhchh----c-----------
Q 037127 197 LNSLVDVGGATGTVAKAIAKAF--------------------PNLECTDFDL---PHVVNGLES----D----------- 238 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~--------------------p~~~~~~~Dl---~~~~~~a~~----~----------- 238 (307)
..+||-||||.|.=..+|+..+ +.++++++|+ ..|+..... .
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4799999999987776666555 2368899999 567776544 1
Q ss_pred -------CCCeEEEecCCCCC-C---------CCccEEEechhhcc-CC--hhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 239 -------LANLKYVGGDMFEA-I---------PPADAVVLKWILHD-WN--DEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 239 -------~~rv~~~~~d~~~~-~---------p~~D~i~~~~vLh~-~~--~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.=.++|.+.|++.. . |..++|.+...++. |+ -.+..++|.++-..++| |..++|+|.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEEcC
Confidence 11479999999872 1 23788988888865 33 45678999999999999 899999985
No 213
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.15 E-value=0.0042 Score=56.53 Aligned_cols=95 Identities=16% Similarity=0.177 Sum_probs=68.2
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEecCCCCCCC---CccEEEechhhccCCh
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIP---PADAVVLKWILHDWND 270 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~~p---~~D~i~~~~vLh~~~~ 270 (307)
+....++|||||++|.++..++++ +.+++++|...+.+... ..++|+...+|.+...| .+|.+++-.+-+ |.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~-~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~--P~ 283 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLM-DTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK--PA 283 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhh-CCCCEEEEeccCcccCCCCCCCCEEEEecccC--HH
Confidence 356789999999999999999998 56999999865544444 67899999999887433 489998888754 32
Q ss_pred hHHHHHHHHHHHhccCCCCC-cEEEEEeeec
Q 037127 271 EECVKILKKCKEAITSNSKI-GKVIIIDMMR 300 (307)
Q Consensus 271 ~~~~~~L~~~~~~L~p~~~g-g~lli~e~~~ 300 (307)
++++-+.+-+.. | .+-.|+..-+
T Consensus 284 ----rva~lm~~Wl~~---g~cr~aIfnLKl 307 (357)
T PRK11760 284 ----RVAELMAQWLVN---GWCREAIFNLKL 307 (357)
T ss_pred ----HHHHHHHHHHhc---CcccEEEEEEEc
Confidence 455555556654 2 2344544443
No 214
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.00096 Score=52.85 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=51.5
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCC-eEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC--C-ccEEEechhh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNL-ECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP--P-ADAVVLKWIL 265 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p--~-~D~i~~~~vL 265 (307)
-.++++.|+|||.|.++.+ -.+|.. .++|+|+ |+.++.+.+ ..-.+.+.+.|+.++.+ + ||..++.-.+
T Consensus 47 iEgkkl~DLgcgcGmLs~a--~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIA--FSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred ccCcchhhhcCchhhhHHH--hhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 3467899999999999944 344444 6899999 888888876 34456889999988544 2 8888776654
No 215
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.10 E-value=0.0013 Score=54.41 Aligned_cols=92 Identities=20% Similarity=0.248 Sum_probs=72.0
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCCCccEEEechhhccCCh
Q 037127 198 NSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIPPADAVVLKWILHDWND 270 (307)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p~~D~i~~~~vLh~~~~ 270 (307)
..+.|+|.|+|-++.-.++. .-+++.++. |....-|.+ ...+++.+.+|..+ ++..+|+++|-+.=--+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 46899999999988777766 458999998 666666665 46789999999998 6777999988775444455
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEE
Q 037127 271 EECVKILKKCKEAITSNSKIGKVI 294 (307)
Q Consensus 271 ~~~~~~L~~~~~~L~p~~~gg~ll 294 (307)
++-+..++.+.+.|+. +++++
T Consensus 112 E~qVpV~n~vleFLr~---d~tii 132 (252)
T COG4076 112 EKQVPVINAVLEFLRY---DPTII 132 (252)
T ss_pred ccccHHHHHHHHHhhc---CCccc
Confidence 5567899999998887 67665
No 216
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.10 E-value=0.0047 Score=51.54 Aligned_cols=102 Identities=18% Similarity=0.257 Sum_probs=73.4
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCCCccEEEechhhccC
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIPPADAVVLKWILHDW 268 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~~ 268 (307)
.-..++|||+|.|+|..++.-++.. ...++..|. |.....++- ..-.|.|...|..-+-|.+|+++.+-+.++-
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence 4567899999999999999888874 235666676 444443332 4556888888887755579999999999865
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 269 NDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 269 ~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
+. +.+++. ....|.. .|..++|.++-++
T Consensus 156 ~~--a~~l~~-~~~~l~~--~g~~vlvgdp~R~ 183 (218)
T COG3897 156 TE--ADRLIP-WKDRLAE--AGAAVLVGDPGRA 183 (218)
T ss_pred hH--HHHHHH-HHHHHHh--CCCEEEEeCCCCC
Confidence 54 457777 6666654 2778888887655
No 217
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.07 E-value=0.0086 Score=46.90 Aligned_cols=96 Identities=20% Similarity=0.342 Sum_probs=65.1
Q ss_pred EEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchhcC--CC---eEEEecCCCC---CCC---CccEEEechhhc
Q 037127 200 LVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLESDL--AN---LKYVGGDMFE---AIP---PADAVVLKWILH 266 (307)
Q Consensus 200 vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~~~--~r---v~~~~~d~~~---~~p---~~D~i~~~~vLh 266 (307)
++|+|||+|... .+.+..+. ..++++|. +.++..+.... .. +.+..+|... ++. .+|++ .....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999977 44444433 47788898 55565543311 22 5788888764 333 38999 555554
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
++.+ ....++++.+.++| +|.+++.......
T Consensus 130 ~~~~--~~~~~~~~~~~l~~---~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP--PAKALRELLRVLKP---GGRLVLSDLLRDG 160 (257)
T ss_pred hcCC--HHHHHHHHHHhcCC---CcEEEEEeccCCC
Confidence 4444 46889999999998 8888887776543
No 218
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.00 E-value=0.0021 Score=54.79 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=56.7
Q ss_pred EEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC--C-ccEEEechhhccCC
Q 037127 200 LVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--P-ADAVVLKWILHDWN 269 (307)
Q Consensus 200 vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--~-~D~i~~~~vLh~~~ 269 (307)
|.||||-.|+....|++...--+++..|+ +.-++.|++ ..++|++..+|-++.++ + +|.|+++.+--
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG--- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG--- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH---
Confidence 68999999999999999988778999999 777777766 67899999999988654 3 78887766432
Q ss_pred hhHHHHHHHHHHHhcc
Q 037127 270 DEECVKILKKCKEAIT 285 (307)
Q Consensus 270 ~~~~~~~L~~~~~~L~ 285 (307)
.-..+||.+....++
T Consensus 78 -~lI~~ILe~~~~~~~ 92 (205)
T PF04816_consen 78 -ELIIEILEAGPEKLS 92 (205)
T ss_dssp -HHHHHHHHHTGGGGT
T ss_pred -HHHHHHHHhhHHHhc
Confidence 123455555444443
No 219
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.96 E-value=0.0045 Score=55.82 Aligned_cols=67 Identities=12% Similarity=0.073 Sum_probs=55.1
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE 251 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~ 251 (307)
.++++..+. ..+...+||.-+|.|+++..+++..|+.+++++|. |.+++.+++ ..+|++++.++|.+
T Consensus 9 l~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 355666555 45567899999999999999999988789999999 888888876 34699999998875
No 220
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=96.94 E-value=0.00089 Score=49.09 Aligned_cols=58 Identities=21% Similarity=0.281 Sum_probs=47.3
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS 107 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s 107 (307)
+.|++.|...+++.|+.+||+.+|+ +...++|.|..|...|++.+.+. ++.|++++..
T Consensus 8 ~~Il~~l~~~~~~~t~~~ia~~l~i---~~~tv~r~l~~L~~~g~l~~~~~---------~~~y~l~~~~ 65 (91)
T smart00346 8 LAVLRALAEEPGGLTLAELAERLGL---SKSTAHRLLNTLQELGYVEQDGQ---------NGRYRLGPKV 65 (91)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeecCC---------CCceeecHHH
Confidence 4456666654368999999999999 67999999999999999998742 4789998754
No 221
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.88 E-value=0.0012 Score=61.54 Aligned_cols=52 Identities=15% Similarity=0.237 Sum_probs=44.0
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC
Q 037127 198 NSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE 251 (307)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~ 251 (307)
.+|||++||+|.++..+++... +++++|. +.+++.+++ ..++++|+.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 4799999999999999998864 7999999 788888776 34589999999865
No 222
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=96.81 E-value=0.0017 Score=45.06 Aligned_cols=59 Identities=22% Similarity=0.269 Sum_probs=46.5
Q ss_pred HhCCcccccccCCC-CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecCh
Q 037127 36 VELSIPDIINKHGK-PTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTN 105 (307)
Q Consensus 36 ~~lglfd~L~~~~~-~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~ 105 (307)
.+-.|+..|...|+ ++|+.+||+.+|+ +...+.|+|..|...|+++.... ..+.|.++.
T Consensus 7 ~~~~IL~~L~~~g~~~~ta~eLa~~lgl---~~~~v~r~L~~L~~~G~V~~~~~--------~~~~W~i~~ 66 (68)
T smart00550 7 LEEKILEFLENSGDETSTALQLAKNLGL---PKKEVNRVLYSLEKKGKVCKQGG--------TPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCC--------CCCceEeec
Confidence 34556777776644 3999999999999 67899999999999999998752 236787764
No 223
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.80 E-value=0.0074 Score=54.83 Aligned_cols=102 Identities=17% Similarity=0.246 Sum_probs=65.9
Q ss_pred ccCCCeEEEecCCchHHHHHHHHH-------CCCCeEEEecc-hHHHHhchh-------cCCCeEEEecCCCCC--CC--
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKA-------FPNLECTDFDL-PHVVNGLES-------DLANLKYVGGDMFEA--IP-- 254 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~-------~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~d~~~~--~p-- 254 (307)
.....+|+|-.||+|.++.++.+. .+..+++|+|+ +.++..+.- ......+..+|.+.. ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 345668999999999999998874 47789999999 666555543 133346888898762 22
Q ss_pred -CccEEEechhh--ccCCh-----------------hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 255 -PADAVVLKWIL--HDWND-----------------EECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 255 -~~D~i~~~~vL--h~~~~-----------------~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.+|+|++.=.. ..|.+ ..-..++.++.+.|++ +|++.++=+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---~G~~~~Ilp 184 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP---GGRAAIILP 184 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc---ccceeEEec
Confidence 48988765432 11111 1113588999999998 898765543
No 224
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=96.79 E-value=0.00074 Score=45.80 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=45.6
Q ss_pred HHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 29 SMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 29 ~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+.+|..-.++.|++.|... +|.|+.|||+.+|+ +...+.+.|+.|...|+++...
T Consensus 4 ~~aL~~p~R~~Il~~L~~~-~~~t~~ela~~l~~---~~~t~s~hL~~L~~aGli~~~~ 58 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLASN-GPMTVSELAEELGI---SQSTVSYHLKKLEEAGLIEVER 58 (61)
T ss_dssp HHHHTSHHHHHHHHHHHHC-STBEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhCCHHHHHHHHHHhcC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 4555666777888888432 89999999999999 6789999999999999999876
No 225
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.78 E-value=0.015 Score=55.92 Aligned_cols=101 Identities=19% Similarity=0.247 Sum_probs=71.4
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC---CCC-CccEEE--
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE---AIP-PADAVV-- 260 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~---~~p-~~D~i~-- 260 (307)
.....+|||+++|.|.=+..++....+ -.++..|+ +.-++.+++ ...+|.+...|... ..+ .||.|+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 356679999999999999999988754 47899998 544444443 34567888788664 234 489998
Q ss_pred --ech---------hhccCChhHH-------HHHHHHHHHhccCCCCCcEEEEEe
Q 037127 261 --LKW---------ILHDWNDEEC-------VKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 261 --~~~---------vLh~~~~~~~-------~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
|+. +...|+.++. .+||.++.+.|+| ||+|+-..
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LVYST 242 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLVYST 242 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEEC
Confidence 442 2334555433 6799999999999 88775433
No 226
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.77 E-value=0.0076 Score=50.29 Aligned_cols=101 Identities=17% Similarity=0.227 Sum_probs=66.6
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCe---------EEEecc-hHHHHhchh------cCCCeEEEec
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLE---------CTDFDL-PHVVNGLES------DLANLKYVGG 247 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~---------~~~~Dl-~~~~~~a~~------~~~rv~~~~~ 247 (307)
..++.... +.+...|+|-=||+|.++++.+...++.. +++.|. +.+++.++. ....|.+...
T Consensus 18 ~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~ 95 (179)
T PF01170_consen 18 AALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQW 95 (179)
T ss_dssp HHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE-
T ss_pred HHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEec
Confidence 33444444 45567899999999999999988877776 899999 888888776 4567999999
Q ss_pred CCCC-CCC--CccEEEechhhcc-CCh-hHH----HHHHHHHHHhccC
Q 037127 248 DMFE-AIP--PADAVVLKWILHD-WND-EEC----VKILKKCKEAITS 286 (307)
Q Consensus 248 d~~~-~~p--~~D~i~~~~vLh~-~~~-~~~----~~~L~~~~~~L~p 286 (307)
|+.+ +.+ .+|+|++.-..-. ... .+. ..+++.+++++++
T Consensus 96 D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 96 DARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp -GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred chhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 9998 533 4898888765432 222 122 3567778888885
No 227
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.76 E-value=0.0044 Score=57.43 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=44.3
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC
Q 037127 198 NSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE 251 (307)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~ 251 (307)
.+|||++||+|.++..+++... +++++|. +++++.+++ ..++++|+.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4699999999999999998863 8999999 888888876 34579999999865
No 228
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=96.69 E-value=0.0034 Score=48.49 Aligned_cols=69 Identities=19% Similarity=0.172 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChh
Q 037127 27 INSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNA 106 (307)
Q Consensus 27 ~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~ 106 (307)
..+++|.--.++.|+..|... ++.++.|||+.+++ .+..+.+.|+.|...|+++....+ ..-.|++++.
T Consensus 8 ~~fkaLadptRl~IL~~L~~~-~~~~v~ela~~l~l---sqstvS~HL~~L~~AGLV~~~r~G-------r~~~Y~l~~~ 76 (117)
T PRK10141 8 QLFKILSDETRLGIVLLLRES-GELCVCDLCTALDQ---SQPKISRHLALLRESGLLLDRKQG-------KWVHYRLSPH 76 (117)
T ss_pred HHHHHhCCHHHHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEEEc-------CEEEEEECch
Confidence 456677777888899988753 68999999999999 578999999999999999988731 1234887653
No 229
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.64 E-value=0.0022 Score=59.32 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=79.0
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEechh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKWI 264 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~v 264 (307)
.....++|+|||.|.....+..- ....++++|. +.-+.++.. ...+..++.+|+.+ +++ .+|.+.+..+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred cccccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 33447899999999999888764 4568899998 444444433 45666778899998 565 4999999999
Q ss_pred hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
.-+.++. ...+++++++++| ||..++.|.+...
T Consensus 188 ~~~~~~~--~~~y~Ei~rv~kp---GG~~i~~e~i~~~ 220 (364)
T KOG1269|consen 188 VCHAPDL--EKVYAEIYRVLKP---GGLFIVKEWIKTA 220 (364)
T ss_pred cccCCcH--HHHHHHHhcccCC---CceEEeHHHHHhh
Confidence 8888886 4889999999999 8998888776543
No 230
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=96.64 E-value=0.0017 Score=57.12 Aligned_cols=59 Identities=24% Similarity=0.354 Sum_probs=48.2
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
+.|+++|...+.++++.|||+++|+ +...+.|+|..|+..||++.++. +++|++++..-
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~gl---pksT~~RlL~tL~~~G~v~~d~~---------~g~Y~Lg~~~~ 65 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGL---PKSTVHRLLQTLVELGYVEQDPE---------DGRYRLGPRLL 65 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEcCC---------CCcEeehHHHH
Confidence 4566777753345679999999999 57899999999999999999963 57999998543
No 231
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.61 E-value=0.0087 Score=52.08 Aligned_cols=103 Identities=18% Similarity=0.168 Sum_probs=70.0
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC--CccEEEechhhc
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP--PADAVVLKWILH 266 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh 266 (307)
...+.+|+|||||-==++.-.....|+.++++.|+ ...++.... ...+.+....|.....| .+|+.++--++|
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 34588999999998877777778888899999999 667777665 67788888899999655 489999999999
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
.+...+. ..--++.+.+.. -.++|.-+...
T Consensus 183 ~le~q~~-g~g~~ll~~~~~----~~~vVSfPtrS 212 (251)
T PF07091_consen 183 CLERQRR-GAGLELLDALRS----PHVVVSFPTRS 212 (251)
T ss_dssp HHHHHST-THHHHHHHHSCE----SEEEEEEES--
T ss_pred HHHHHhc-chHHHHHHHhCC----CeEEEeccccc
Confidence 8766542 333445556653 46666666543
No 232
>PRK11569 transcriptional repressor IclR; Provisional
Probab=96.57 E-value=0.002 Score=57.54 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=48.1
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
+.|+++|.+.+++.|+.|||+.+|+ +...+.|+|..|...|||+.++. .++|++.+...
T Consensus 31 l~IL~~l~~~~~~~~lseia~~lgl---pksTv~RlL~tL~~~G~l~~~~~---------~~~Y~lG~~l~ 89 (274)
T PRK11569 31 LKLLEWIAESNGSVALTELAQQAGL---PNSTTHRLLTTMQQQGFVRQVGE---------LGHWAIGAHAF 89 (274)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC---------CCeEecCHHHH
Confidence 3455666554478999999999999 67899999999999999998753 58999987644
No 233
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=96.53 E-value=0.0024 Score=57.02 Aligned_cols=59 Identities=17% Similarity=0.312 Sum_probs=48.2
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
+.|++.|...+++.|+.|||+.+|+ +...+.|+|..|...|||.+++. .++|++.+...
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lgl---pkStv~RlL~tL~~~G~l~~~~~---------~~~Y~lG~~l~ 86 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDL---PLSTTFRLLKVLQAADFVYQDSQ---------LGWWHIGLGVF 86 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC---------CCeEEecHHHH
Confidence 4456666654468999999999999 57899999999999999998753 58899997543
No 234
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=96.49 E-value=0.0025 Score=56.09 Aligned_cols=58 Identities=17% Similarity=0.254 Sum_probs=47.9
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcch
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKL 109 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~ 109 (307)
+.|++.|...+.+.|+.|||+.+|+ +...+.|+|..|...||++++ +++|++.+.-..
T Consensus 12 l~IL~~l~~~~~~~~l~eia~~lgl---pksT~~RlL~tL~~~G~l~~~-----------~~~Y~lG~~~~~ 69 (248)
T TIGR02431 12 LAVIEAFGAERPRLTLTDVAEATGL---TRAAARRFLLTLVELGYVTSD-----------GRLFWLTPRVLR 69 (248)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeC-----------CCEEEecHHHHH
Confidence 4566666654478999999999999 578999999999999999975 478999985443
No 235
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=96.48 E-value=0.0049 Score=44.56 Aligned_cols=49 Identities=18% Similarity=0.420 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
++.|.+|||+.+++ ++..+++++..|...|+++... |-+|.|.++...+
T Consensus 24 ~~~s~~eiA~~~~i---~~~~l~kil~~L~~~Gli~s~~--------G~~GGy~L~~~~~ 72 (83)
T PF02082_consen 24 KPVSSKEIAERLGI---SPSYLRKILQKLKKAGLIESSR--------GRGGGYRLARPPE 72 (83)
T ss_dssp C-BEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET--------STTSEEEESS-CC
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHhhCCeeEecC--------CCCCceeecCCHH
Confidence 56999999999999 6899999999999999998875 2358899886554
No 236
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.46 E-value=0.035 Score=56.28 Aligned_cols=116 Identities=10% Similarity=0.076 Sum_probs=74.2
Q ss_pred hHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHC------------------------------------------C
Q 037127 182 ATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF------------------------------------------P 219 (307)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~------------------------------------------p 219 (307)
++..++....| ..+...++|-.||+|.++++.+... .
T Consensus 177 lAaa~l~~a~w-~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 177 LAAAILLRSGW-PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHcCC-CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 34455554443 2446789999999999999886531 1
Q ss_pred CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC----CccEEEechhhc-cCCh-hHHHHHHHHHHHhcc
Q 037127 220 NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP----PADAVVLKWILH-DWND-EECVKILKKCKEAIT 285 (307)
Q Consensus 220 ~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p----~~D~i~~~~vLh-~~~~-~~~~~~L~~~~~~L~ 285 (307)
..+++++|+ +.+++.|+. ..++|.|..+|+.+ +.+ .+|+|+++=..- .+.+ .+...+-+.+.+.++
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 236899999 888888876 45689999999987 322 389887774332 2332 334445455555554
Q ss_pred CCCCCcEEEEEee
Q 037127 286 SNSKIGKVIIIDM 298 (307)
Q Consensus 286 p~~~gg~lli~e~ 298 (307)
..-+|+++.++..
T Consensus 336 ~~~~g~~~~llt~ 348 (702)
T PRK11783 336 QQFGGWNAALFSS 348 (702)
T ss_pred HhCCCCeEEEEeC
Confidence 1001777777653
No 237
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.41 E-value=0.016 Score=48.04 Aligned_cols=99 Identities=21% Similarity=0.328 Sum_probs=61.4
Q ss_pred HhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecchHHHHhchhcCCCeEEEec-CCCCC---------CC--
Q 037127 188 HKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDLPHVVNGLESDLANLKYVGG-DMFEA---------IP-- 254 (307)
Q Consensus 188 ~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~-d~~~~---------~p-- 254 (307)
++|. .+.+..+|||+||-.|.++.-..++. |+-.+.++|+-.+. ..+.+.++++ |+.+| .|
T Consensus 62 dKy~-~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 62 DKYR-FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----PPEGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred hhcc-ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----CCCCcccccccccCCHHHHHHHHHhCCCC
Confidence 3444 35667899999999999999888776 99899999984332 2344556666 66653 34
Q ss_pred CccEEEechhh---------ccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127 255 PADAVVLKWIL---------HDWNDEECVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 255 ~~D~i~~~~vL---------h~~~~~~~~~~L~~~~~~L~p~~~gg~lli 295 (307)
.+|+|+.-+.= |+-.-+-|...|.-+...+.| +|.++.
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p---~g~fvc 182 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIP---NGSFVC 182 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCC---CcEEEE
Confidence 37877654421 111222344444444455566 666554
No 238
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.39 E-value=0.017 Score=48.40 Aligned_cols=98 Identities=11% Similarity=0.109 Sum_probs=67.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC------CC-CccEEEe
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA------IP-PADAVVL 261 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~------~p-~~D~i~~ 261 (307)
...++||+=||+|.++.+.+.+. ..+++.+|. +..+...++ ..+++..+..|.+.. .. .||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 46789999999999999998885 347999999 677776665 345799999997652 12 5999988
Q ss_pred chhhccCChhH-HHHHHHHHH--HhccCCCCCcEEEEEeeecC
Q 037127 262 KWILHDWNDEE-CVKILKKCK--EAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 262 ~~vLh~~~~~~-~~~~L~~~~--~~L~p~~~gg~lli~e~~~~ 301 (307)
-=.-. ... ..++|..+. ..|++ +.++|+|.-..
T Consensus 121 DPPY~---~~~~~~~~l~~l~~~~~l~~----~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYA---KGLYYEELLELLAENNLLNE----DGLIIIEHSKK 156 (183)
T ss_dssp --STT---SCHHHHHHHHHHHHTTSEEE----EEEEEEEEETT
T ss_pred CCCcc---cchHHHHHHHHHHHCCCCCC----CEEEEEEecCC
Confidence 74433 222 256677766 67786 67888888655
No 239
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=96.32 E-value=0.0037 Score=55.31 Aligned_cols=57 Identities=19% Similarity=0.348 Sum_probs=46.7
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
.|++.|... ++.|+.|||+.+|+ +...+.|+|..|...||+++.+. .++|++.+...
T Consensus 18 ~IL~~l~~~-~~l~l~eia~~lgl---~kstv~Rll~tL~~~G~l~~~~~---------~~~Y~lG~~~~ 74 (257)
T PRK15090 18 GILQALGEE-REIGITELSQRVMM---SKSTVYRFLQTMKTLGYVAQEGE---------SEKYSLTLKLF 74 (257)
T ss_pred HHHHHhhcC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC---------CCcEEecHHHH
Confidence 445555543 58999999999999 57899999999999999998742 58899998654
No 240
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=96.32 E-value=0.0035 Score=55.64 Aligned_cols=62 Identities=19% Similarity=0.275 Sum_probs=49.6
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
+.|++.|...++++|+.|||+.+|+ +...+.|+|..|...|++++.+. .++|++++....+.
T Consensus 14 l~iL~~l~~~~~~ls~~eia~~lgl---~kstv~RlL~tL~~~g~v~~~~~---------~~~Y~Lg~~~~~l~ 75 (263)
T PRK09834 14 LMVLRALNRLDGGATVGLLAELTGL---HRTTVRRLLETLQEEGYVRRSAS---------DDSFRLTLKVRQLS 75 (263)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEecC---------CCcEEEcHHHHHHH
Confidence 4455666544467999999999999 67899999999999999998753 57899998665443
No 241
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.03 Score=48.52 Aligned_cols=98 Identities=19% Similarity=0.300 Sum_probs=74.0
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCC----CeEEEecc-hHHHHhc-hh-----cCCCeEEEecCCCCC---CCC---cc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPN----LECTDFDL-PHVVNGL-ES-----DLANLKYVGGDMFEA---IPP---AD 257 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~----~~~~~~Dl-~~~~~~a-~~-----~~~rv~~~~~d~~~~---~p~---~D 257 (307)
-+...++|+|.|+..=+..|+..+.+ ++.+-+|+ ..+++.. +. ..-.|.-+++|+..+ .|. ==
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 34778999999999888888877766 78999999 4444332 22 333466677888662 442 24
Q ss_pred EEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127 258 AVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 258 ~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli 295 (307)
.+++...|-++++++|..+|.+++.+|.| |..+++
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~p---Gd~~Ll 191 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRP---GDYFLL 191 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCC---cceEEE
Confidence 56788899999999999999999999999 766665
No 242
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=96.28 E-value=0.0076 Score=51.69 Aligned_cols=93 Identities=13% Similarity=0.161 Sum_probs=69.0
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-------cCCCeEEEecCCCC---CCC--CccEEE
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-------DLANLKYVGGDMFE---AIP--PADAVV 260 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~d~~~---~~p--~~D~i~ 260 (307)
.+...+|||.=.|-|+++++.+++. ..+++-++- |.|++.|.- ...+|+++.||..+ .++ .+|+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 3467899999999999999999983 237888887 888887753 23478999999987 455 388774
Q ss_pred -----echhhccCChhHHHHHHHHHHHhccCCCCCcEEE
Q 037127 261 -----LKWILHDWNDEECVKILKKCKEAITSNSKIGKVI 294 (307)
Q Consensus 261 -----~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~ll 294 (307)
++..-+-+ ...+-++++++|+| ||+++
T Consensus 211 HDPPRfS~AgeLY----seefY~El~RiLkr---gGrlF 242 (287)
T COG2521 211 HDPPRFSLAGELY----SEEFYRELYRILKR---GGRLF 242 (287)
T ss_pred eCCCccchhhhHh----HHHHHHHHHHHcCc---CCcEE
Confidence 12222222 34788999999999 89886
No 243
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.003 Score=51.00 Aligned_cols=101 Identities=19% Similarity=0.215 Sum_probs=73.8
Q ss_pred CCCeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHHHhchh--------cCCCeEEEecCCCCC-----CCCccEEE
Q 037127 196 GLNSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--------DLANLKYVGGDMFEA-----IPPADAVV 260 (307)
Q Consensus 196 ~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--------~~~rv~~~~~d~~~~-----~p~~D~i~ 260 (307)
.+.+||++||| +|..+..++..-|...+.+.|- ...++..++ ..++++.+..+.... +..||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 35789999999 6777778888889889999997 555565554 345565555555542 22599999
Q ss_pred echhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
++-++. | ++....+.+.+...|+| .|+-+++.+-+.
T Consensus 109 aADClF-f-dE~h~sLvdtIk~lL~p---~g~Al~fsPRRg 144 (201)
T KOG3201|consen 109 AADCLF-F-DEHHESLVDTIKSLLRP---SGRALLFSPRRG 144 (201)
T ss_pred eccchh-H-HHHHHHHHHHHHHHhCc---ccceeEecCccc
Confidence 999985 3 44456888999999999 788777766554
No 244
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=96.25 E-value=0.0023 Score=40.89 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=37.4
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceee
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQ 85 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~ 85 (307)
++.|...|.. ++.++.|||+.+|+ +...+.+.|+.|...|++++
T Consensus 4 R~~Il~~L~~--~~~~~~el~~~l~~---s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 4 RLRILKLLSE--GPLTVSELAEELGL---SQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHHHTT--SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHh--CCCchhhHHHhccc---cchHHHHHHHHHHHCcCeeC
Confidence 3456667775 89999999999999 68999999999999999874
No 245
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=96.19 E-value=0.027 Score=38.44 Aligned_cols=44 Identities=18% Similarity=0.322 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecCh
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTN 105 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~ 105 (307)
.+.|..+||+.+|+ +...+.+.|+.|...|++.... .+.|.++|
T Consensus 24 ~~~s~~ela~~~g~---s~~tv~r~l~~L~~~g~i~~~~----------~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGL---TRETVSRTLKELEEEGLISRRG----------RGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC----------CCeEEeCC
Confidence 68999999999999 6799999999999999999874 37788764
No 246
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=96.17 E-value=0.0059 Score=42.01 Aligned_cols=53 Identities=26% Similarity=0.386 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127 48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS 107 (307)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s 107 (307)
+++.+..+||+.+++ +...+.+.++.|...|++++..... +.-...|++|+.|
T Consensus 16 ~~~~t~~~l~~~~~~---~~~~vs~~i~~L~~~glv~~~~~~~----d~R~~~~~LT~~G 68 (68)
T PF13463_consen 16 DGPMTQSDLAERLGI---SKSTVSRIIKKLEEKGLVEKERDPH----DKRSKRYRLTPAG 68 (68)
T ss_dssp TS-BEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEESS----CTTSEEEEE-HHH
T ss_pred CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCCCC----cCCeeEEEeCCCC
Confidence 389999999999999 6789999999999999998876311 1112368988865
No 247
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.16 E-value=0.025 Score=48.46 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=70.8
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCC---------CCc
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAI---------PPA 256 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~---------p~~ 256 (307)
+-++++++|||.=+|+.+...+.+.|. -+++.+|. +...+.+.+ ....|+++.+...+.+ ..|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 345789999999999999999999986 57899998 444444443 6789999999988732 137
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
|++++- +|-+. ......++.+.+++ |.|+++|.+
T Consensus 151 DfaFvD----adK~n-Y~~y~e~~l~Llr~----GGvi~~DNv 184 (237)
T KOG1663|consen 151 DFAFVD----ADKDN-YSNYYERLLRLLRV----GGVIVVDNV 184 (237)
T ss_pred eEEEEc----cchHH-HHHHHHHHHhhccc----ccEEEEecc
Confidence 877653 23333 45788899999998 555555553
No 248
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.12 E-value=0.016 Score=52.30 Aligned_cols=67 Identities=18% Similarity=0.189 Sum_probs=51.2
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE 251 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~ 251 (307)
.++++..+. ..+...+||.--|.|+++.++++.+|+.+++++|. |.+++.+++ ..+|+.++.++|.+
T Consensus 9 l~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 9 LKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp HHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred HHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 355666655 56667899999999999999999999999999999 888888876 46899999999875
No 249
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.09 E-value=0.068 Score=47.35 Aligned_cols=102 Identities=20% Similarity=0.176 Sum_probs=75.3
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh--------cCCCeEEEecCCCCCC----------C-C
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES--------DLANLKYVGGDMFEAI----------P-P 255 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~--------~~~rv~~~~~d~~~~~----------p-~ 255 (307)
.+...||.+|||-=.....+... ++++++=+|+|++++.=++ ..+++.+++.|+.+.. | .
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34567999999977666655322 2578888888998875443 3578999999997421 1 2
Q ss_pred ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
.-++++-.++.+++.+++..+|+.+.+...| | ..+++|.+.+
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~---g-s~l~~d~~~~ 200 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAP---G-SRLAFDYVRP 200 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCC---C-cEEEEEeccc
Confidence 4578888899999999999999999998877 4 4555676554
No 250
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.06 E-value=0.0079 Score=45.24 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=27.4
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL 228 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl 228 (307)
.....++|||||+|.+.--|.++ +.++.|+|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 34668999999999999888887 778999996
No 251
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.03 E-value=0.01 Score=52.30 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=60.2
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCC-eEEEecc-hHHHHhchh---------------------------------cC
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNL-ECTDFDL-PHVVNGLES---------------------------------DL 239 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~---------------------------------~~ 239 (307)
.++.++||||||+-.+- ++...+.. +++..|. +.-.+..++ ..
T Consensus 55 ~~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR 132 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLR 132 (256)
T ss_dssp S-EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHH
Confidence 34678999999986553 33333333 3666666 433332221 01
Q ss_pred CCeE-EEecCCCCC--------CCC-ccEEEechhhccC--ChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 240 ANLK-YVGGDMFEA--------IPP-ADAVVLKWILHDW--NDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 240 ~rv~-~~~~d~~~~--------~p~-~D~i~~~~vLh~~--~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
..|. .+..|..++ .|+ +|++++..+|..- +.++-.+.++++.+.||| ||.+++....
T Consensus 133 ~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~~~l 201 (256)
T PF01234_consen 133 RAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILAGVL 201 (256)
T ss_dssp HHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEEEES
T ss_pred HhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEEEEc
Confidence 1233 667788772 233 9999999999764 345668899999999999 8888877653
No 252
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.95 E-value=0.0049 Score=46.46 Aligned_cols=91 Identities=18% Similarity=0.299 Sum_probs=39.4
Q ss_pred EEecCCchHHHHHHHHHCCCC---eEEEecc-h---HHHHhchh--cCCCeEEEecCCCCC---CC--CccEEEechhhc
Q 037127 201 VDVGGATGTVAKAIAKAFPNL---ECTDFDL-P---HVVNGLES--DLANLKYVGGDMFEA---IP--PADAVVLKWILH 266 (307)
Q Consensus 201 lDvGgG~G~~~~~l~~~~p~~---~~~~~Dl-~---~~~~~a~~--~~~rv~~~~~d~~~~---~p--~~D~i~~~~vLh 266 (307)
|+||+..|..+..+++..+.. +++++|. + .+.+..++ ..++++++.++..+- .+ .+|++++-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999888876654 6899998 4 23333332 567899999999762 22 588887765 34
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 267 DWNDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
. .+.+..-++.+.+.|+| ||.|++-|
T Consensus 80 ~--~~~~~~dl~~~~~~l~~---ggviv~dD 105 (106)
T PF13578_consen 80 S--YEAVLRDLENALPRLAP---GGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEE---EEEEEEE-
T ss_pred C--HHHHHHHHHHHHHHcCC---CeEEEEeC
Confidence 2 34556789999999998 66666544
No 253
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=95.89 E-value=0.018 Score=36.47 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (307)
-+.|..+||+.+|+ +...+.+.|+.|...|+++..
T Consensus 7 ~~~s~~~la~~l~~---s~~tv~~~l~~L~~~g~l~~~ 41 (48)
T smart00419 7 LPLTRQEIAELLGL---TRETVSRTLKRLEKEGLISRE 41 (48)
T ss_pred eccCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEe
Confidence 47899999999999 678999999999999999987
No 254
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.89 E-value=0.053 Score=53.06 Aligned_cols=67 Identities=12% Similarity=0.163 Sum_probs=46.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCC--------CeEEEecc-hHHHHhchh---cC--CCeEEEecCCCCC--------C
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPN--------LECTDFDL-PHVVNGLES---DL--ANLKYVGGDMFEA--------I 253 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~--------~~~~~~Dl-~~~~~~a~~---~~--~rv~~~~~d~~~~--------~ 253 (307)
...+|+|.+||+|.++..+++..+. ..++++|+ +..++.++. .. -.++....|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4568999999999999999887752 56899999 667776654 11 2345555654431 1
Q ss_pred CCccEEEec
Q 037127 254 PPADAVVLK 262 (307)
Q Consensus 254 p~~D~i~~~ 262 (307)
+.||+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 258988654
No 255
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=95.88 E-value=0.018 Score=47.38 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
++.|+++||+.+++ +...+.++|..|...|++.... |..|.|.+..-..
T Consensus 24 ~~vs~~eIA~~~~i---p~~~l~kIl~~L~~aGLv~s~r--------G~~GGy~Lar~p~ 72 (164)
T PRK10857 24 GPVPLADISERQGI---SLSYLEQLFSRLRKNGLVSSVR--------GPGGGYLLGKDAS 72 (164)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCC--------CCCCCeeccCCHH
Confidence 68999999999999 6899999999999999999864 2356798875433
No 256
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.83 E-value=0.062 Score=50.13 Aligned_cols=91 Identities=14% Similarity=0.188 Sum_probs=70.1
Q ss_pred CeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC--C--CCccEEEechhhc
Q 037127 198 NSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA--I--PPADAVVLKWILH 266 (307)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~--~--p~~D~i~~~~vLh 266 (307)
.+|||+-||+|..+...+++.++ -+++..|+ |..++.+++ ....+++..+|...- . ..||+|.+-= +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP--f 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP--F 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--C
Confidence 58999999999999999998654 47999999 888887766 234688999998762 1 2499888743 2
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 267 DWNDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
..+ ..+|..+.+.+++ +|.++|.-
T Consensus 124 --Gs~--~~fld~al~~~~~---~glL~vTa 147 (374)
T TIGR00308 124 --GTP--APFVDSAIQASAE---RGLLLVTA 147 (374)
T ss_pred --CCc--HHHHHHHHHhccc---CCEEEEEe
Confidence 221 3788999999987 88888874
No 257
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=95.82 E-value=0.0092 Score=42.47 Aligned_cols=49 Identities=14% Similarity=0.280 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.+..+|+..+++ +...+.+.|..|...|+++.. ++.|.+|+.|+.+.
T Consensus 18 ~~~~~t~i~~~~~L---~~~~~~~yL~~L~~~gLI~~~-----------~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 18 GGAKKTEIMYKANL---NYSTLKKYLKELEEKGLIKKK-----------DGKYRLTEKGKEFL 66 (77)
T ss_dssp T-B-HHHHHTTST-----HHHHHHHHHHHHHTTSEEEE-----------TTEEEE-HHHHHHH
T ss_pred CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCcCeeCC-----------CCEEEECccHHHHH
Confidence 78999999999999 689999999999999999775 59999999998554
No 258
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.73 E-value=0.045 Score=50.13 Aligned_cols=98 Identities=18% Similarity=0.191 Sum_probs=78.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC--C-CCccEEEechhh
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA--I-PPADAVVLKWIL 265 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~--~-p~~D~i~~~~vL 265 (307)
.+.+|||.=+|.|.|+..+++... .+++.+|+ |..++.+++ ..++|+.+.||..+- . +.+|-|+|...-
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 478999999999999999998753 34999999 888887776 567799999999883 3 459999988765
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
. +.++|-.+.+.+++ ||.+...+.+-.++
T Consensus 267 ~------a~~fl~~A~~~~k~---~g~iHyy~~~~e~~ 295 (341)
T COG2520 267 S------AHEFLPLALELLKD---GGIIHYYEFVPEDD 295 (341)
T ss_pred c------chhhHHHHHHHhhc---CcEEEEEeccchhh
Confidence 1 24677888888887 78888888776654
No 259
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=95.72 E-value=0.12 Score=45.50 Aligned_cols=106 Identities=15% Similarity=0.223 Sum_probs=72.2
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecch-H----HHHhchh--cCCCeEEEecCCCCC-CC
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDLP-H----VVNGLES--DLANLKYVGGDMFEA-IP 254 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl~-~----~~~~a~~--~~~rv~~~~~d~~~~-~p 254 (307)
..|+..++ ...+.+|++-|.|+|.++..|++.- |.-+++-+|.. . +.+..++ ..+.+++...|+... ++
T Consensus 95 a~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 95 AMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 45566666 6778999999999999999999886 66688888883 2 2333333 688999999999873 33
Q ss_pred ----CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 255 ----PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 255 ----~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
.+|.|++-. |.+- ..+-.++++++.. ||+++-+.++.
T Consensus 173 ~ks~~aDaVFLDl-----PaPw--~AiPha~~~lk~~--g~r~csFSPCI 213 (314)
T KOG2915|consen 173 IKSLKADAVFLDL-----PAPW--EAIPHAAKILKDE--GGRLCSFSPCI 213 (314)
T ss_pred ccccccceEEEcC-----CChh--hhhhhhHHHhhhc--CceEEeccHHH
Confidence 489888753 3221 2233344466651 56777666554
No 260
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=95.71 E-value=0.0029 Score=43.80 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=38.6
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
..++..|-.. ++.|+.+||+.+|+ +...+.+.|+.|...|++++..
T Consensus 11 ~~vy~~Ll~~-~~~t~~eIa~~l~i---~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 11 AKVYLALLKN-GPATAEEIAEELGI---SRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp HHHHHHHHHH-CHEEHHHHHHHHTS---SHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence 3444444332 79999999999999 6899999999999999999986
No 261
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.68 E-value=0.21 Score=42.58 Aligned_cols=99 Identities=14% Similarity=0.150 Sum_probs=72.8
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh----cCCCeEEEecCCCC---CCC--CccEEEechhh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES----DLANLKYVGGDMFE---AIP--PADAVVLKWIL 265 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~----~~~rv~~~~~d~~~---~~p--~~D~i~~~~vL 265 (307)
.++.+||.||=|-|.....+.++-|..+.++---|.|.++.+. ..++|....|-..+ .+| .||-|+.--.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 5678999999999999999998888877666555999999987 46677777774433 445 37766554432
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.. -++...+-+.+.+.||| +|.+-.+..
T Consensus 180 e~--yEdl~~~hqh~~rLLkP---~gv~SyfNg 207 (271)
T KOG1709|consen 180 EL--YEDLRHFHQHVVRLLKP---EGVFSYFNG 207 (271)
T ss_pred hH--HHHHHHHHHHHhhhcCC---CceEEEecC
Confidence 22 24567888999999999 787765543
No 262
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.65 E-value=0.035 Score=51.91 Aligned_cols=98 Identities=14% Similarity=0.171 Sum_probs=75.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCC-eEEEecc-hHHHHhchh-------cCCCeEEEecCCCCC----C--C-CccEE
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNL-ECTDFDL-PHVVNGLES-------DLANLKYVGGDMFEA----I--P-PADAV 259 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~d~~~~----~--p-~~D~i 259 (307)
.+++|||+=|=||.++...+.. +. +++.+|+ ..+++-|++ ...++.|+++|.|+- . . .||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 3889999999999999999987 45 8999999 677888876 357899999999982 1 2 59999
Q ss_pred Eechhhc------cCCh-hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 260 VLKWILH------DWND-EECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 260 ~~~~vLh------~~~~-~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
++-=.-. -|+- .+-.+++..+.+.|+| ||.++++..
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p---gG~l~~~s~ 337 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP---GGTLVTSSC 337 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCC---CCEEEEEec
Confidence 8743211 1322 2346789999999998 898887754
No 263
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=95.60 E-value=0.0043 Score=44.56 Aligned_cols=68 Identities=16% Similarity=0.266 Sum_probs=48.2
Q ss_pred HhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchh
Q 037127 36 VELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLL 110 (307)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l 110 (307)
++++|...|... +..++.+|.+.+|+ +...+.+.|..|...|+++....-. +..-...|++|+.|+..
T Consensus 1 vRl~Il~~L~~~-~~~~f~~L~~~l~l---t~g~Ls~hL~~Le~~GyV~~~k~~~---~~~p~t~~~lT~~Gr~~ 68 (80)
T PF13601_consen 1 VRLAILALLYAN-EEATFSELKEELGL---TDGNLSKHLKKLEEAGYVEVEKEFE---GRRPRTWYSLTDKGREA 68 (80)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEE-S---SS--EEEEEE-HHHHHH
T ss_pred CHHHHHHHHhhc-CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEEEecc---CCCCeEEEEECHHHHHH
Confidence 355666666653 68999999999999 6799999999999999999886321 00001249999999843
No 264
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=95.56 E-value=0.0088 Score=38.23 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=36.1
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCcee
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFA 84 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~ 84 (307)
+..|+..|.++ +.+|..+||+.+|+ +...+.+.++-|...|+++
T Consensus 5 ~~~Il~~l~~~-~~~t~~ela~~~~i---s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 5 QRKILNYLREN-PRITQKELAEKLGI---SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHC-TTS-HHHHHHHHTS----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCcCcC
Confidence 34566777775 67999999999999 6899999999999999985
No 265
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=95.44 E-value=0.042 Score=42.32 Aligned_cols=69 Identities=13% Similarity=0.184 Sum_probs=52.1
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcC
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKD 113 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~ 113 (307)
++.++..|... ++.|..+||+.+++ +...+.+.++-|...|++++..... +.-.-.|.+|+.|+.+...
T Consensus 30 q~~iL~~l~~~-~~~t~~ela~~~~~---~~~tvs~~l~~Le~~GlI~r~~~~~----D~R~~~v~LT~~G~~~~~~ 98 (118)
T TIGR02337 30 QWRILRILAEQ-GSMEFTQLANQACI---LRPSLTGILARLERDGLVTRLKASN----DQRRVYISLTPKGQALYAS 98 (118)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeccCCC----CCCeeEEEECHhHHHHHHH
Confidence 44566667654 68999999999999 5679999999999999999975210 0011269999999866543
No 266
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=95.26 E-value=0.031 Score=44.35 Aligned_cols=49 Identities=22% Similarity=0.330 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
++.|.++||+.+++ ++..++++|..|...|++.... +..|.|.++....
T Consensus 24 ~~~s~~~ia~~~~i---p~~~l~kil~~L~~~glv~s~~--------G~~Ggy~l~~~~~ 72 (135)
T TIGR02010 24 GPVTLADISERQGI---SLSYLEQLFAKLRKAGLVKSVR--------GPGGGYQLGRPAE 72 (135)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEe--------CCCCCEeccCCHH
Confidence 68999999999999 6899999999999999998754 2246788876443
No 267
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.23 E-value=0.26 Score=45.72 Aligned_cols=109 Identities=14% Similarity=0.163 Sum_probs=72.5
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCC---------------------------------------eE
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNL---------------------------------------EC 223 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~---------------------------------------~~ 223 (307)
+..++..-. +.+...++|==||+|.++++.+...++. ..
T Consensus 180 AaAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 180 AAAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 445555445 3444689999999999999998877531 26
Q ss_pred EEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEechhhcc-CChhHHH-----HHHHHHHHhccCC
Q 037127 224 TDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKWILHD-WNDEECV-----KILKKCKEAITSN 287 (307)
Q Consensus 224 ~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~-~~~~~~~-----~~L~~~~~~L~p~ 287 (307)
++.|+ +.+++.|+. ..+.|+|.++|+.. +-| .+|+++++=.--. +.+++.+ .+.+.+++.++.
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~- 336 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAG- 336 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcC-
Confidence 79999 888888876 68899999999986 333 5898887653311 3333222 344555566653
Q ss_pred CCCcEEEEE
Q 037127 288 SKIGKVIII 296 (307)
Q Consensus 288 ~~gg~lli~ 296 (307)
-++.++.
T Consensus 337 --ws~~v~t 343 (381)
T COG0116 337 --WSRYVFT 343 (381)
T ss_pred --CceEEEE
Confidence 3444443
No 268
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.21 E-value=0.16 Score=44.47 Aligned_cols=98 Identities=17% Similarity=0.128 Sum_probs=64.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh-----------cCCCeEEEecCCCCC------CCC-cc
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES-----------DLANLKYVGGDMFEA------IPP-AD 257 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~-----------~~~rv~~~~~d~~~~------~p~-~D 257 (307)
...+||++|+|+|..+...+.. ....++.-|.|.++...+. ....|....-+...+ .|. +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~-~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALL-LGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHH-hcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 4668999999999666655553 4678999999777665543 233566666555542 234 89
Q ss_pred EEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 258 AVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 258 ~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
+++.+.+++.-.. -..++.-++..|.. ++.+++.-..
T Consensus 165 lilasDvvy~~~~--~e~Lv~tla~ll~~---~~~i~l~~~l 201 (248)
T KOG2793|consen 165 LILASDVVYEEES--FEGLVKTLAFLLAK---DGTIFLAYPL 201 (248)
T ss_pred EEEEeeeeecCCc--chhHHHHHHHHHhc---CCeEEEEEec
Confidence 9999999975333 23566666677875 5655444433
No 269
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=95.16 E-value=0.03 Score=44.74 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
+++.++.+||+.+++ ++..+.+.++.|...|++.... .+.|++|+.|+.+.
T Consensus 20 ~~~~~~~ela~~l~v---s~~svs~~l~~L~~~Gli~~~~----------~~~i~LT~~G~~~a 70 (142)
T PRK03902 20 KGYARVSDIAEALSV---HPSSVTKMVQKLDKDEYLIYEK----------YRGLVLTPKGKKIG 70 (142)
T ss_pred CCCcCHHHHHHHhCC---ChhHHHHHHHHHHHCCCEEEec----------CceEEECHHHHHHH
Confidence 378999999999999 5789999999999999999764 47899999997654
No 270
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.12 E-value=0.24 Score=42.51 Aligned_cols=95 Identities=13% Similarity=0.133 Sum_probs=66.7
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHH----hchhcCCCeEEEecCCCCCC------CCccEEEe
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVN----GLESDLANLKYVGGDMFEAI------PPADAVVL 261 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~----~a~~~~~rv~~~~~d~~~~~------p~~D~i~~ 261 (307)
+.+..+||-+|..+|....++..--. +-.+.+++. |...+ .|+ ..++|--+-.|...|. +.+|+++.
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~-~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAK-KRPNIIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH-HSTTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhc-cCCceeeeeccCCChHHhhcccccccEEEe
Confidence 66788999999999999999987664 567888888 54433 333 5778888899998852 24787765
Q ss_pred chhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 262 KWILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 262 ~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
--. + ++ ++.-++.++..-||+ ||.++|.
T Consensus 150 DVa-Q--p~-Qa~I~~~Na~~fLk~---gG~~~i~ 177 (229)
T PF01269_consen 150 DVA-Q--PD-QARIAALNARHFLKP---GGHLIIS 177 (229)
T ss_dssp E-S-S--TT-HHHHHHHHHHHHEEE---EEEEEEE
T ss_pred cCC-C--hH-HHHHHHHHHHhhccC---CcEEEEE
Confidence 433 2 33 456788889999998 8887765
No 271
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.11 E-value=0.062 Score=45.83 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=54.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC---CccEEEech
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP---PADAVVLKW 263 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p---~~D~i~~~~ 263 (307)
+..++.||||-.+++...+.+.+|..+++..|+ +.-.+.|.+ ..+|++...+|-+.++- +.|+++...
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG 93 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG 93 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC
Confidence 444599999999999999999999999999998 544444443 78999999999988543 478876654
No 272
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=95.05 E-value=0.022 Score=39.24 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=45.4
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCC--CcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 40 IPDIINKHGKPTTLNDLVSALTINPS--KTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~--~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
|++.|.+.++|++..+|++.+..... .++.++|.|++|-..|+..+.. .+.+.+|+.|.
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~g----------~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKVG----------RQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCccccC----------CcccccCHHHH
Confidence 45566666799999999999865322 3589999999999999777654 45667888775
No 273
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.05 E-value=0.11 Score=43.43 Aligned_cols=106 Identities=15% Similarity=0.198 Sum_probs=66.6
Q ss_pred cccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-h-HHHH-----------hchh-cCCCeEEEecCCCC-CCC-Cc
Q 037127 193 VFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-P-HVVN-----------GLES-DLANLKYVGGDMFE-AIP-PA 256 (307)
Q Consensus 193 ~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~-~~~~-----------~a~~-~~~rv~~~~~d~~~-~~p-~~ 256 (307)
.++...+|+|+=.|.|+|+.-|.... +.++++.-. | +... .+++ ...+++.+..+... ..| +.
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~v-gp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~ 123 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAV-GPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKL 123 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhc-CCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcc
Confidence 46778899999999999999887754 233433332 2 2211 1111 23445555554444 222 36
Q ss_pred cEEEechhhccC-----ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 257 DAVVLKWILHDW-----NDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 257 D~i~~~~vLh~~-----~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
|+++....-|++ ...-+.++-+.++++||| ||.++|.|.....
T Consensus 124 d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~dH~a~p 171 (238)
T COG4798 124 DLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVEDHRADP 171 (238)
T ss_pred cccccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEEeccccC
Confidence 777665444433 234567899999999999 9999999887654
No 274
>PHA00738 putative HTH transcription regulator
Probab=95.03 E-value=0.024 Score=42.60 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=48.9
Q ss_pred HhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 36 VELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
.++.|++.|.. +++.++.+|++.+++ ....+.+.|++|...|++.....+ ....|++++...
T Consensus 13 tRr~IL~lL~~-~e~~~V~eLae~l~l---SQptVS~HLKvLreAGLV~srK~G-------r~vyY~Ln~~~~ 74 (108)
T PHA00738 13 LRRKILELIAE-NYILSASLISHTLLL---SYTTVLRHLKILNEQGYIELYKEG-------RTLYAKIRENSK 74 (108)
T ss_pred HHHHHHHHHHH-cCCccHHHHHHhhCC---CHHHHHHHHHHHHHCCceEEEEEC-------CEEEEEECCCcc
Confidence 46677777875 247999999999999 689999999999999999999741 123577776543
No 275
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=95.02 E-value=0.037 Score=44.77 Aligned_cols=51 Identities=14% Similarity=0.299 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchh
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLL 110 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l 110 (307)
++.|+++||+..++ ++..|+++|..|...|+++... |-.|.|+|+.-...+
T Consensus 24 ~~~s~~~IA~~~~i---s~~~L~kil~~L~kaGlV~S~r--------G~~GGy~Lar~~~~I 74 (150)
T COG1959 24 GPVSSAEIAERQGI---SPSYLEKILSKLRKAGLVKSVR--------GKGGGYRLARPPEEI 74 (150)
T ss_pred CcccHHHHHHHhCc---CHHHHHHHHHHHHHcCCEEeec--------CCCCCccCCCChHHC
Confidence 48999999999999 6799999999999999999986 336889988654433
No 276
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=94.94 E-value=0.35 Score=44.24 Aligned_cols=100 Identities=14% Similarity=0.142 Sum_probs=73.9
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEec-CCCC-CCCC--ccEEEech
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGG-DMFE-AIPP--ADAVVLKW 263 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~-d~~~-~~p~--~D~i~~~~ 263 (307)
...+..|||==||||.++++..-. +++++|.|+ ..++.-++. ..+...+... |+.. |+++ +|.|..--
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 345678999999999999998877 889999999 678877776 1344545555 8877 6774 88887643
Q ss_pred hh------ccCC-hhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 264 IL------HDWN-DEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 264 vL------h~~~-~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.- .--. ++--.++|+.+.++|++ ||++++.-+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~---gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKP---GGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhc---CcEEEEecC
Confidence 22 1111 33456899999999998 899988776
No 277
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=94.89 E-value=0.017 Score=39.19 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=35.8
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
|.+.|....+|++..|||+.+|+ +...++++|..|...|.+++.+
T Consensus 5 Il~~i~~~~~p~~T~eiA~~~gl---s~~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 5 ILEYIKEQNGPLKTREIADALGL---SIYQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp HHHHHHHHTS-EEHHHHHHHHTS----HHHHHHHHHHHHHCTSEEEES
T ss_pred HHHHHHHcCCCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 33444432379999999999999 6899999999999999999875
No 278
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=94.89 E-value=0.16 Score=40.59 Aligned_cols=63 Identities=19% Similarity=0.237 Sum_probs=48.4
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127 40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK 112 (307)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~ 112 (307)
++..|...+++.|..+||+.+++ +...+.++++.|...|++++... ..+. .+.+|+.|+.+..
T Consensus 36 vL~~l~~~~~~~t~~eLa~~l~~---~~~tvt~~v~~Le~~GlV~r~~~-------~~DrR~~~l~LT~~G~~~~~ 101 (144)
T PRK03573 36 TLHNIHQLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLISRQTC-------ASDRRAKRIKLTEKAEPLIS 101 (144)
T ss_pred HHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeecC-------CCCcCeeeeEEChHHHHHHH
Confidence 34555433346899999999999 67899999999999999999862 1222 5789999886654
No 279
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=94.86 E-value=0.041 Score=43.22 Aligned_cols=49 Identities=16% Similarity=0.377 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
++.|.++||+.+++ +...++++|+.|...|++.... +..|.|.++.-..
T Consensus 24 ~~~s~~eia~~~~i---~~~~v~~il~~L~~~gli~~~~--------g~~ggy~l~~~~~ 72 (132)
T TIGR00738 24 GPVSVKEIAERQGI---SRSYLEKILRTLRRAGLVESVR--------GPGGGYRLARPPE 72 (132)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEecc--------CCCCCccCCCCHH
Confidence 59999999999999 6899999999999999998753 1246788875444
No 280
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=94.82 E-value=0.36 Score=42.87 Aligned_cols=98 Identities=18% Similarity=0.246 Sum_probs=69.4
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchH-H-------HHhch---h--------------------------
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPH-V-------VNGLE---S-------------------------- 237 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~-~-------~~~a~---~-------------------------- 237 (307)
....+||-=|||-|.++-+++++ +..+.+-+.+. | +.... +
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 34578999999999999999998 55666666632 1 11100 0
Q ss_pred ---------cCCCeEEEecCCCC--CCC----CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 238 ---------DLANLKYVGGDMFE--AIP----PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 238 ---------~~~rv~~~~~d~~~--~~p----~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
...++++..|||.+ +.+ .+|+|+....+- +.+.....|+.+.+.||| ||.++=+-+.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~Ni~~Yi~tI~~lLkp---gG~WIN~GPL 204 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID--TAENIIEYIETIEHLLKP---GGYWINFGPL 204 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee--chHHHHHHHHHHHHHhcc---CCEEEecCCc
Confidence 13468899999988 223 489998886664 344578999999999999 8866544443
No 281
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.77 E-value=0.13 Score=41.08 Aligned_cols=99 Identities=15% Similarity=0.158 Sum_probs=64.9
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCCCccEEEechhhc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIPPADAVVLKWILH 266 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p~~D~i~~~~vLh 266 (307)
.+..+.+|+|.|.|....+.++.. -...+++++ |..+..++- ...+.+|...|+++ ++.+|..++...+=.
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFgaes 149 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGAES 149 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEeehHH
Confidence 344789999999999998888875 356799999 766665542 57789999999998 555544333322211
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
-++ .+-.+++.-|+. +.+++-.-+-+|.
T Consensus 150 ~m~-----dLe~KL~~E~p~---nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 150 VMP-----DLEDKLRTELPA---NTRVVACRFPLPT 177 (199)
T ss_pred HHh-----hhHHHHHhhCcC---CCeEEEEecCCCc
Confidence 122 233445555666 6777766655553
No 282
>KOG2730 consensus Methylase [General function prediction only]
Probab=94.74 E-value=0.023 Score=48.37 Aligned_cols=54 Identities=17% Similarity=0.240 Sum_probs=44.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE 251 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~ 251 (307)
....|+|.-||.|+-.++++..+| .++.+|+ |.-+..|+. ..+||+|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 456899999999999999999977 5788888 655777765 56799999999986
No 283
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=94.74 E-value=0.076 Score=34.78 Aligned_cols=43 Identities=30% Similarity=0.327 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHH
Q 037127 28 NSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRIL 77 (307)
Q Consensus 28 ~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L 77 (307)
.-.+|.+|++.|-||. + ...|+.|||+.+|+ ....+...||-.
T Consensus 5 Q~e~L~~A~~~GYfd~-P---R~~tl~elA~~lgi---s~st~~~~LRra 47 (53)
T PF04967_consen 5 QREILKAAYELGYFDV-P---RRITLEELAEELGI---SKSTVSEHLRRA 47 (53)
T ss_pred HHHHHHHHHHcCCCCC-C---CcCCHHHHHHHhCC---CHHHHHHHHHHH
Confidence 4578999999999997 3 46999999999999 456666666643
No 284
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=94.70 E-value=0.11 Score=46.26 Aligned_cols=102 Identities=16% Similarity=0.156 Sum_probs=72.5
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCC-eEEEecc-hHHHHhchh---------cCCCeEEEecCCCC---CC--CCcc
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNL-ECTDFDL-PHVVNGLES---------DLANLKYVGGDMFE---AI--PPAD 257 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~---~~--p~~D 257 (307)
...+++++=||||-|.+++..+++ +.+ .+..+|. ..+++...+ ..++|.++.||-+. .. ..+|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 456889999999999999999987 665 4677777 556665554 47899999999765 23 3599
Q ss_pred EEEechhhccCChhH--HHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 258 AVVLKWILHDWNDEE--CVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 258 ~i~~~~vLh~~~~~~--~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
+|+.-.-=-.-|... -..+..-+.++||+ +|.+++....
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~---dgv~~~q~ec 238 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKG---DGVVCTQGEC 238 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCC---CcEEEEecce
Confidence 988754332222211 13466677889998 8988887644
No 285
>PRK11050 manganese transport regulator MntR; Provisional
Probab=94.59 E-value=0.36 Score=39.06 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=47.1
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
|...+.. +++.+..+||+.+++ +...+.++++.|...|++.... ...+.+|+.|+.+.
T Consensus 42 I~~~l~~-~~~~t~~eLA~~l~i---s~stVsr~l~~Le~~GlI~r~~----------~~~v~LT~~G~~l~ 99 (152)
T PRK11050 42 IADLIAE-VGEARQVDIAARLGV---SQPTVAKMLKRLARDGLVEMRP----------YRGVFLTPEGEKLA 99 (152)
T ss_pred HHHHHHh-cCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec----------CCceEECchHHHHH
Confidence 3445544 368999999999999 6799999999999999999865 35788998887654
No 286
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=94.56 E-value=0.02 Score=39.75 Aligned_cols=44 Identities=18% Similarity=0.392 Sum_probs=36.1
Q ss_pred ccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecc
Q 037127 41 PDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTL 88 (307)
Q Consensus 41 fd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~ 88 (307)
.+.|... +.+|+.+||..+++ ++..++.+|+.|...|.+.+...
T Consensus 6 ~~~l~~~-~~~S~~eLa~~~~~---s~~~ve~mL~~l~~kG~I~~~~~ 49 (69)
T PF09012_consen 6 RDYLRER-GRVSLAELAREFGI---SPEAVEAMLEQLIRKGYIRKVDM 49 (69)
T ss_dssp HHHHHHS--SEEHHHHHHHTT-----HHHHHHHHHHHHCCTSCEEEEE
T ss_pred HHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEecC
Confidence 4556654 78999999999999 68999999999999999999864
No 287
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.53 E-value=0.17 Score=46.80 Aligned_cols=111 Identities=12% Similarity=0.226 Sum_probs=75.9
Q ss_pred HHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc---hHHHHhchh------------cCCCeEEEecCCC
Q 037127 186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL---PHVVNGLES------------DLANLKYVGGDMF 250 (307)
Q Consensus 186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl---~~~~~~a~~------------~~~rv~~~~~d~~ 250 (307)
+++.+. +.......|+|+|.|.....++.......-+|+++ |.-+..... -...++.+.++|.
T Consensus 184 i~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 184 IVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHhc--cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 344444 55667899999999999888776655445566665 544443332 2455888999998
Q ss_pred CC------CCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 037127 251 EA------IPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK 304 (307)
Q Consensus 251 ~~------~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~ 304 (307)
.+ ++.+++|+..++.. +++...+ +.++..-+++ |-+|+-.+++.+-++
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~F--dp~L~lr-~~eil~~ck~---gtrIiS~~~L~~r~r 315 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVAF--DPELKLR-SKEILQKCKD---GTRIISSKPLVPRPR 315 (419)
T ss_pred CHHHHHHHhhcceEEEEecccC--CHHHHHh-hHHHHhhCCC---cceEecccccccccc
Confidence 84 34699999999884 5543323 3467777787 889998888877443
No 288
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.53 E-value=0.17 Score=45.34 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=55.3
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCe-EEEecc-hHHHHhchh----cCCCeEEEecCCCC
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLE-CTDFDL-PHVVNGLES----DLANLKYVGGDMFE 251 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~ 251 (307)
.++++..+. .......||.-=|.|+++..+++.+|... .+++|. |.+++.|++ ..+|++++.++|.+
T Consensus 12 l~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 12 LNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 355566555 45568899999999999999999999765 999999 889999987 37799999988754
No 289
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=94.43 E-value=0.013 Score=49.30 Aligned_cols=88 Identities=18% Similarity=0.275 Sum_probs=58.9
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCC------CCCccEEEechhhcc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEA------IPPADAVVLKWILHD 267 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~------~p~~D~i~~~~vLh~ 267 (307)
..+.++||+|.|.|..+..++..+.+ +...++ ..|..+.++ ...+.... --.+|+|.|-++|-.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~k-------k~ynVl~~~ew~~t~~k~dli~clNlLDR 181 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKK-------KNYNVLTEIEWLQTDVKLDLILCLNLLDR 181 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhh-------cCCceeeehhhhhcCceeehHHHHHHHHh
Confidence 34679999999999999888776654 344455 334444442 22222221 114899999999975
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127 268 WNDEECVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli 295 (307)
..++ -++|+.++.++.|. .|++++
T Consensus 182 c~~p--~kLL~Di~~vl~ps--ngrviv 205 (288)
T KOG3987|consen 182 CFDP--FKLLEDIHLVLAPS--NGRVIV 205 (288)
T ss_pred hcCh--HHHHHHHHHHhccC--CCcEEE
Confidence 4444 59999999999983 566654
No 290
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=94.34 E-value=0.062 Score=43.63 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=46.9
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcC
Q 037127 48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKD 113 (307)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~ 113 (307)
++++...+||+.+++ .+..+...++-|...|+++..+ .+.+.+|+.|+..+..
T Consensus 22 ~~~~~~~diA~~L~V---sp~sVt~ml~rL~~~GlV~~~~----------y~gi~LT~~G~~~a~~ 74 (154)
T COG1321 22 KGFARTKDIAERLKV---SPPSVTEMLKRLERLGLVEYEP----------YGGVTLTEKGREKAKE 74 (154)
T ss_pred cCcccHHHHHHHhCC---CcHHHHHHHHHHHHCCCeEEec----------CCCeEEChhhHHHHHH
Confidence 389999999999999 5688899999999999999987 6899999999866543
No 291
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=94.30 E-value=0.22 Score=44.74 Aligned_cols=99 Identities=16% Similarity=0.240 Sum_probs=69.3
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-------cCCCeEEEecCCCCC------CCCccEEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-------DLANLKYVGGDMFEA------IPPADAVV 260 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~d~~~~------~p~~D~i~ 260 (307)
...++|||+=|=+|.++...+.. ...+++.+|. ..+++.+++ ..++++|++.|+++. ...||+|+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 34679999999999999987764 3457999999 677888776 247899999999872 22599998
Q ss_pred echhhc---cCC-hhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 261 LKWILH---DWN-DEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 261 ~~~vLh---~~~-~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
+-=.-. .+. ..+-.++++.+.+.++| ||.++.+-
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~---gG~l~~~s 238 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKP---GGLLLTCS 238 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEEc
Confidence 742211 122 12346789999999998 78876553
No 292
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=94.29 E-value=0.26 Score=41.84 Aligned_cols=100 Identities=14% Similarity=0.205 Sum_probs=53.8
Q ss_pred CCCeEEEecCCchHHHH---HHHHHC-CCCeEEEecc--hHHHHhchh---cCCCeEEEecCCCCC-----C------CC
Q 037127 196 GLNSLVDVGGATGTVAK---AIAKAF-PNLECTDFDL--PHVVNGLES---DLANLKYVGGDMFEA-----I------PP 255 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~---~l~~~~-p~~~~~~~Dl--~~~~~~a~~---~~~rv~~~~~d~~~~-----~------p~ 255 (307)
++..|+++|-=.|+.+. .+++.+ +..+++++|+ +..-..+.+ ..+||+++.||-.++ . +.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 47799999976665554 445555 7789999998 232222222 568999999998763 1 12
Q ss_pred ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
..+|+.- .-|.+. .+...|+.....+++ |+.++|-|+...
T Consensus 112 ~vlVilD-s~H~~~--hvl~eL~~y~plv~~---G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 112 PVLVILD-SSHTHE--HVLAELEAYAPLVSP---GSYLIVEDTIIE 151 (206)
T ss_dssp SEEEEES-S----S--SHHHHHHHHHHT--T---T-EEEETSHHHH
T ss_pred ceEEEEC-CCccHH--HHHHHHHHhCccCCC---CCEEEEEecccc
Confidence 3344332 334333 357889988899998 888888887653
No 293
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=94.28 E-value=0.048 Score=43.62 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=49.8
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK 112 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~ 112 (307)
+.++..|... ++.|..+||+.+++ +...+.++++.|...|++++... .+++ .+.+|+.|+.+..
T Consensus 43 ~~vL~~l~~~-~~~t~~eLa~~l~i---~~~tvsr~l~~Le~~GlI~R~~~-------~~DrR~~~l~LT~~G~~~~~ 109 (144)
T PRK11512 43 FKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPN-------PNDKRGVLVKLTTSGAAICE 109 (144)
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccC-------cccCCeeEeEEChhHHHHHH
Confidence 3445566543 68999999999999 67999999999999999999862 1233 4788888886653
No 294
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=94.28 E-value=0.057 Score=45.96 Aligned_cols=69 Identities=19% Similarity=0.251 Sum_probs=49.6
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcC
Q 037127 39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKD 113 (307)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~ 113 (307)
.|+..|... ++.|+.+||+.+|+ +...+++.|+.|...|++++.... ++.+.-.-.|.+|+.++.+...
T Consensus 5 ~IL~~L~~~-~~~t~~eLA~~lgi---s~~tV~~~L~~Le~~GlV~r~~~~--~~~gRp~~~y~LT~~G~~~~~~ 73 (203)
T TIGR02702 5 DILSYLLKQ-GQATAAALAEALAI---SPQAVRRHLKDLETEGLIEYEAVV--QGMGRPQYHYQLSRQGREQFPQ 73 (203)
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEeecc--cCCCCCceEEEECcchhhhccc
Confidence 355556544 68999999999999 679999999999999999987310 0001112348999998865543
No 295
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=94.26 E-value=0.047 Score=40.20 Aligned_cols=67 Identities=16% Similarity=0.279 Sum_probs=48.9
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK 112 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~ 112 (307)
+.++..|... ++.|..+||+.+++ +...+.+.++-|...|++++.... .+.-...|.+|+.|..+..
T Consensus 13 ~~il~~l~~~-~~~~~~~la~~~~~---s~~~i~~~l~~L~~~g~v~~~~~~----~~~r~~~~~lT~~g~~~~~ 79 (101)
T smart00347 13 FLVLRILYEE-GPLSVSELAKRLGV---SPSTVTRVLDRLEKKGLIRRLPSP----EDRRSVLVSLTEEGRELIE 79 (101)
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCC---CchhHHHHHHHHHHCCCeEecCCC----CCCCeEEEEECHhHHHHHH
Confidence 3455555543 57999999999999 578899999999999999987521 0111236888888876553
No 296
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.23 E-value=0.1 Score=49.67 Aligned_cols=65 Identities=23% Similarity=0.381 Sum_probs=51.4
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC--C-CC---CccEEEe
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE--A-IP---PADAVVL 261 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~--~-~p---~~D~i~~ 261 (307)
.+..+|+|+=||.|.|+..|++. ..+++++++ ++.++.|++ ..++++|+.++..+ + .. .+|.|++
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred cCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 45678999999999999999966 457999999 888888876 45669999999876 2 21 3677665
No 297
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=94.20 E-value=0.077 Score=43.06 Aligned_cols=49 Identities=12% Similarity=0.333 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
++.|..+||+..++ ++..|+++|..|...||++... |-.|.|.++....
T Consensus 23 ~~~s~~eIA~~~~i---s~~~L~kIl~~L~~aGlv~S~r--------G~~GGy~La~~p~ 71 (153)
T PRK11920 23 KLSRIPEIARAYGV---SELFLFKILQPLVEAGLVETVR--------GRNGGVRLGRPAA 71 (153)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeec--------CCCCCeeecCCHH
Confidence 57899999999999 6899999999999999999886 3367899886544
No 298
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=94.18 E-value=0.063 Score=42.15 Aligned_cols=46 Identities=17% Similarity=0.400 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecCh
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTN 105 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~ 105 (307)
++.|+.|||+.+++ +...++++|+.|...|++.... +..+.|.+..
T Consensus 24 ~~~s~~eia~~l~i---s~~~v~~~l~~L~~~Gli~~~~--------g~~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGL---NAPTVSKILKQLSLAGIVTSKR--------GVEGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEecC--------CCCCChhhcC
Confidence 68999999999999 6899999999999999998753 1145677754
No 299
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.05 E-value=0.3 Score=44.18 Aligned_cols=97 Identities=21% Similarity=0.279 Sum_probs=71.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHCC-CCeEEEecchHHHHhchh--------cCCCeEEEecCCCC-CCC------C----
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDLPHVVNGLES--------DLANLKYVGGDMFE-AIP------P---- 255 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl~~~~~~a~~--------~~~rv~~~~~d~~~-~~p------~---- 255 (307)
....||-+|||==.-.-.+- .| ++++.-+|+|++++.=++ ...++++++.|+++ +.+ +
T Consensus 92 g~~qvViLgaGLDTRayRl~--~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 92 GIRQVVILGAGLDTRAYRLD--WPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred cccEEEEeccccccceeecC--CCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 36789999998544333332 23 477888888999876433 34489999999995 332 1
Q ss_pred -ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 256 -ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 256 -~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.-++++-.++.+++.++..++|+++...++| |..+ +.+.
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~---gS~~-~~~~ 209 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAP---GSRV-AFDY 209 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCC---CceE-EEec
Confidence 4578899999999999999999999999997 5544 4444
No 300
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=93.99 E-value=0.032 Score=37.50 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=31.8
Q ss_pred CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 51 TTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 51 ~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
.|+.+||+.+++ +...+.++++.|...|++++..
T Consensus 22 ~t~~~la~~l~~---~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 22 LTQSELAERLGI---SKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp EEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence 899999999999 6799999999999999999986
No 301
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=93.94 E-value=0.13 Score=43.99 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=49.5
Q ss_pred ccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcCC
Q 037127 41 PDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDS 114 (307)
Q Consensus 41 fd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~~ 114 (307)
...|.++ +|+|+.+||+++|+ +...+++.|+.|.+.|+++..... .+-|.-.-.|++|..+.....++
T Consensus 17 l~lL~~~-g~~sa~elA~~Lgi---s~~avR~HL~~Le~~Glv~~~~~~--~g~GRP~~~y~Lt~~g~~~f~~~ 84 (218)
T COG2345 17 LELLKKS-GPVSADELAEELGI---SPMAVRRHLDDLEAEGLVEVERQQ--GGRGRPAKLYRLTEKGREQFPKR 84 (218)
T ss_pred HHHHhcc-CCccHHHHHHHhCC---CHHHHHHHHHHHHhCcceeeeecc--CCCCCCceeeeecccchhhcchh
Confidence 3445544 79999999999999 579999999999999999987421 00111112599999988655443
No 302
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=93.94 E-value=0.12 Score=47.95 Aligned_cols=49 Identities=18% Similarity=0.372 Sum_probs=38.2
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCC
Q 037127 199 SLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDM 249 (307)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~ 249 (307)
.|||+=||.|.++..+++.. -+++++|. +++++.|++ ..++++|+.++.
T Consensus 199 ~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 79999999999999999985 47999999 888888876 467899987654
No 303
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.93 E-value=0.39 Score=41.55 Aligned_cols=94 Identities=11% Similarity=0.082 Sum_probs=62.4
Q ss_pred HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc--hHHHHhchhcCCCeEEEec-CCCCC----CC-Cc
Q 037127 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL--PHVVNGLESDLANLKYVGG-DMFEA----IP-PA 256 (307)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl--~~~~~~a~~~~~rv~~~~~-d~~~~----~p-~~ 256 (307)
..++.+. ...+...+||||..||.|+..++++. ..+++++|. .......+ ..+||..... |+..- +. ..
T Consensus 69 ~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR-~d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 69 KALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLR-NDPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred HHHHhcC-cCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHh-cCCcEEEEecCChhhCCHHHcccCC
Confidence 3455565 23567899999999999999999874 347999998 33444445 6677766665 55431 22 35
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccC
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITS 286 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p 286 (307)
|++++--..- + ...+|-.+...+++
T Consensus 146 d~~v~DvSFI--S---L~~iLp~l~~l~~~ 170 (245)
T COG1189 146 DLIVIDVSFI--S---LKLILPALLLLLKD 170 (245)
T ss_pred CeEEEEeehh--h---HHHHHHHHHHhcCC
Confidence 6666543221 2 35778888888887
No 304
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=93.92 E-value=0.41 Score=39.90 Aligned_cols=86 Identities=21% Similarity=0.327 Sum_probs=62.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh----c----CCCeEEEecCCCCC-----C------C-C
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES----D----LANLKYVGGDMFEA-----I------P-P 255 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~----~----~~rv~~~~~d~~~~-----~------p-~ 255 (307)
+...||-+|||-=.....+...+++++++-+|+|++++.-++ . ..++++++.|+.++ + + .
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 445899999999999999988888899999999998876554 1 23467899999962 1 1 2
Q ss_pred ccEEEechhhccCChhHHHHHHHHHH
Q 037127 256 ADAVVLKWILHDWNDEECVKILKKCK 281 (307)
Q Consensus 256 ~D~i~~~~vLh~~~~~~~~~~L~~~~ 281 (307)
.-++++=.++.+++.+++..+|+.++
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 56788888999999999999998763
No 305
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.86 E-value=0.18 Score=48.23 Aligned_cols=95 Identities=23% Similarity=0.296 Sum_probs=67.1
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-----hHHHHhchhcCCC-eEEEecCCCCCC---C-CccEEEechh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-----PHVVNGLESDLAN-LKYVGGDMFEAI---P-PADAVVLKWI 264 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-----~~~~~~a~~~~~r-v~~~~~d~~~~~---p-~~D~i~~~~v 264 (307)
.....|+|...|.|.|+.+|.+. | +.++.. +..+... .+| +-=.-+|..+++ | .||++...++
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vI---ydRGLIG~yhDWCE~fsTYPRTYDLlHA~~l 436 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVI---YDRGLIGVYHDWCEAFSTYPRTYDLLHADGL 436 (506)
T ss_pred cceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhh---hhcccchhccchhhccCCCCcchhheehhhh
Confidence 45688999999999999999764 2 444443 2222222 222 222335777754 4 4999999999
Q ss_pred hccCChh-HHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 265 LHDWNDE-ECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 265 Lh~~~~~-~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
+..+.+. +...+|-++-|+|+| +|.++|-|.+
T Consensus 437 fs~~~~rC~~~~illEmDRILRP---~G~~iiRD~~ 469 (506)
T PF03141_consen 437 FSLYKDRCEMEDILLEMDRILRP---GGWVIIRDTV 469 (506)
T ss_pred hhhhcccccHHHHHHHhHhhcCC---CceEEEeccH
Confidence 9887654 557899999999999 8999987753
No 306
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=93.82 E-value=0.049 Score=37.36 Aligned_cols=39 Identities=26% Similarity=0.517 Sum_probs=32.4
Q ss_pred CCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 47 HGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 47 ~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
.|-|-|+.|||+.+|+. ++..+.+.|+.|...|++.+.+
T Consensus 22 ~G~~Pt~rEIa~~~g~~--S~~tv~~~L~~Le~kG~I~r~~ 60 (65)
T PF01726_consen 22 NGYPPTVREIAEALGLK--STSTVQRHLKALERKGYIRRDP 60 (65)
T ss_dssp HSS---HHHHHHHHTSS--SHHHHHHHHHHHHHTTSEEEGC
T ss_pred cCCCCCHHHHHHHhCCC--ChHHHHHHHHHHHHCcCccCCC
Confidence 35688999999999995 5899999999999999999885
No 307
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.69 E-value=0.76 Score=38.87 Aligned_cols=96 Identities=13% Similarity=0.129 Sum_probs=69.9
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCCCC------CccEEEech
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEAIP------PADAVVLKW 263 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~~p------~~D~i~~~~ 263 (307)
++...+||-+|..+|....++..-.++-.+.+++. |.+....-. ..+++--+-+|...|.. .+|+++.--
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DV 153 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQDV 153 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEec
Confidence 67889999999999999999999888667888887 444333222 56778888899988632 478776532
Q ss_pred hhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
.- | +++.-+..++..-|++ +|.++|.
T Consensus 154 AQ---p-~Qa~I~~~Na~~FLk~---~G~~~i~ 179 (231)
T COG1889 154 AQ---P-NQAEILADNAEFFLKK---GGYVVIA 179 (231)
T ss_pred CC---c-hHHHHHHHHHHHhccc---CCeEEEE
Confidence 22 2 3456778888999998 7766654
No 308
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=93.68 E-value=0.053 Score=39.74 Aligned_cols=63 Identities=21% Similarity=0.307 Sum_probs=46.7
Q ss_pred cccccccCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 40 IPDIINKHGKPTTLNDLVSAL-TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~-g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
|+..|.. |+..+.||.+.+ |+ .+..|.+-|+.|...|++++..... ....-.|++|+.|+.+.
T Consensus 10 IL~~l~~--g~~rf~el~~~l~~i---s~~~L~~~L~~L~~~GLv~r~~~~~----~p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 10 ILRALFQ--GPMRFSELQRRLPGI---SPKVLSQRLKELEEAGLVERRVYPE----VPPRVEYSLTEKGKELL 73 (90)
T ss_dssp HHHHHTT--SSEEHHHHHHHSTTS----HHHHHHHHHHHHHTTSEEEEEESS----SSSEEEEEE-HHHHHHH
T ss_pred HHHHHHh--CCCcHHHHHHhcchh---HHHHHHHHHHHHHHcchhhcccccC----CCCCCccCCCcCHHHHH
Confidence 3444554 799999999999 88 5789999999999999999875310 01123699999999776
No 309
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=93.66 E-value=0.11 Score=41.51 Aligned_cols=60 Identities=12% Similarity=0.320 Sum_probs=45.8
Q ss_pred HHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecCh
Q 037127 31 SLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTN 105 (307)
Q Consensus 31 ~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~ 105 (307)
++++.+.++.+ +. |.+.|..+||+..|+ +...++++|..|...|+++..+ +-.|.|.++.
T Consensus 10 Al~~~i~la~~---~~-g~~~s~~~ia~~~~i---s~~~vrk~l~~L~~~Glv~s~~--------G~~GG~~l~~ 69 (141)
T PRK11014 10 GLRALIYMASL---PE-GRMTSISEVTEVYGV---SRNHMVKIINQLSRAGYVTAVR--------GKNGGIRLGK 69 (141)
T ss_pred HHHHHHHHhcC---CC-CCccCHHHHHHHHCc---CHHHHHHHHHHHHhCCEEEEec--------CCCCCeeecC
Confidence 44555554433 22 368899999999999 6799999999999999999886 2246788764
No 310
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=93.63 E-value=0.095 Score=34.86 Aligned_cols=44 Identities=11% Similarity=0.299 Sum_probs=38.3
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
|++.|... +.+|+++||+.+++ .+.-++|=|..|...|++.+.-
T Consensus 5 Il~~l~~~-~~~s~~ela~~~~V---S~~TiRRDl~~L~~~g~i~r~~ 48 (57)
T PF08220_consen 5 ILELLKEK-GKVSVKELAEEFGV---SEMTIRRDLNKLEKQGLIKRTH 48 (57)
T ss_pred HHHHHHHc-CCEEHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence 45566654 79999999999999 6799999999999999999884
No 311
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=93.55 E-value=0.12 Score=38.02 Aligned_cols=46 Identities=17% Similarity=0.342 Sum_probs=40.4
Q ss_pred HHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 53 LNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 53 ~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
+.+||+.+++ +...+.+.++.|...|++.+.+ +..|.+|+.+..+.
T Consensus 2 ~~ela~~l~i---s~stvs~~l~~L~~~glI~r~~----------~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV---SPPTVTQMLKKLEKDGLVEYEP----------YRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC---ChHHHHHHHHHHHHCCCEEEcC----------CCceEechhHHHHH
Confidence 5689999999 6799999999999999999986 46899999888664
No 312
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=93.47 E-value=0.063 Score=41.75 Aligned_cols=49 Identities=18% Similarity=0.428 Sum_probs=39.8
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecc
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTL 88 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~ 88 (307)
+..+|.+|-+.++|.|+++||+.++. +...+.|-|+-|...|++.++..
T Consensus 29 Dv~v~~~LL~~~~~~tvdelae~lnr---~rStv~rsl~~L~~~GlV~Rek~ 77 (126)
T COG3355 29 DVEVYKALLEENGPLTVDELAEILNR---SRSTVYRSLQNLLEAGLVEREKV 77 (126)
T ss_pred HHHHHHHHHhhcCCcCHHHHHHHHCc---cHHHHHHHHHHHHHcCCeeeeee
Confidence 34445444422389999999999999 68999999999999999999974
No 313
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=93.42 E-value=0.26 Score=33.08 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=30.5
Q ss_pred CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 51 TTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 51 ~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
.|..+||+.+++ +...+++.|..|...|+++..+
T Consensus 26 ~~~~~la~~~~i---s~~~v~~~l~~L~~~G~i~~~~ 59 (66)
T cd07377 26 PSERELAEELGV---SRTTVREALRELEAEGLVERRP 59 (66)
T ss_pred CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 459999999999 6799999999999999998764
No 314
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=93.33 E-value=0.09 Score=44.73 Aligned_cols=59 Identities=19% Similarity=0.334 Sum_probs=46.3
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS 107 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s 107 (307)
++.++..|..+ ++.+..+||+.+++ +...+.+.|..|...|++++... -...|.+|+.|
T Consensus 145 ~~~IL~~l~~~-g~~s~~eia~~l~i---s~stv~r~L~~Le~~GlI~r~~~--------r~~~~~lT~~G 203 (203)
T TIGR01884 145 ELKVLEVLKAE-GEKSVKNIAKKLGK---SLSTISRHLRELEKKGLVEQKGR--------KGKRYSLTKLG 203 (203)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEcC--------CccEEEeCCCC
Confidence 34455556543 57999999999999 57889999999999999999851 13578888764
No 315
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=93.24 E-value=0.13 Score=35.41 Aligned_cols=57 Identities=21% Similarity=0.341 Sum_probs=43.2
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
.|+..+.. ++.+..+||+.+++ +...+.+.|+.|...|++..... .....|++++ ++
T Consensus 11 ~il~~l~~--~~~~~~ei~~~~~i---~~~~i~~~l~~L~~~g~i~~~~~-------~~~~~~~~~~-g~ 67 (78)
T cd00090 11 RILRLLLE--GPLTVSELAERLGL---SQSTVSRHLKKLEEAGLVESRRE-------GRRVYYSLTD-AE 67 (78)
T ss_pred HHHHHHHH--CCcCHHHHHHHHCc---CHhHHHHHHHHHHHCCCeEEEEe-------ccEEEEEeCC-ch
Confidence 34455554 34999999999999 67889999999999999998752 1235677776 54
No 316
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=93.23 E-value=0.035 Score=36.96 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=35.3
Q ss_pred ccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 43 IINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 43 ~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
.|... ++.|..+||+.+++ +...+.++++.|...|++++..
T Consensus 11 ~l~~~-~~~~~~~la~~~~~---~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 11 ILYEN-GGITQSELAEKLGI---SRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp HHHHH-SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHc-CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecc
Confidence 34443 67999999999999 6899999999999999999986
No 317
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=93.14 E-value=0.45 Score=42.90 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=43.3
Q ss_pred CCCeEEEecCCch-HHHHHHHHHCCCCeEEEecc-hHHHHhchh-------cCCCeEEEec----CCCCCC--C--CccE
Q 037127 196 GLNSLVDVGGATG-TVAKAIAKAFPNLECTDFDL-PHVVNGLES-------DLANLKYVGG----DMFEAI--P--PADA 258 (307)
Q Consensus 196 ~~~~vlDvGgG~G-~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------~~~rv~~~~~----d~~~~~--p--~~D~ 258 (307)
...++||||+|.. .|..--++.| ++++++.|+ +..++.|++ +.++|+++.. +++... + .+|+
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred cceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 3578999999966 5555455555 899999999 778888876 5789998754 455532 1 3899
Q ss_pred EEechhhccCCh
Q 037127 259 VVLKWILHDWND 270 (307)
Q Consensus 259 i~~~~vLh~~~~ 270 (307)
.+|.=..|.=.+
T Consensus 181 tmCNPPFy~s~~ 192 (299)
T PF05971_consen 181 TMCNPPFYSSQE 192 (299)
T ss_dssp EEE-----SS--
T ss_pred EecCCccccChh
Confidence 999888886444
No 318
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=93.11 E-value=0.2 Score=32.94 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=32.4
Q ss_pred CCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 49 KPT-TLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 49 ~~~-t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
..+ |..+||+.+++ +...+++.|..|...|++....
T Consensus 18 ~~l~s~~~la~~~~v---s~~tv~~~l~~L~~~g~i~~~~ 54 (60)
T smart00345 18 DKLPSERELAAQLGV---SRTTVREALSRLEAEGLVQRRP 54 (60)
T ss_pred CcCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 456 89999999999 6799999999999999998775
No 319
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=93.05 E-value=0.11 Score=45.53 Aligned_cols=66 Identities=14% Similarity=0.348 Sum_probs=56.3
Q ss_pred HHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchh
Q 037127 31 SLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLL 110 (307)
Q Consensus 31 ~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l 110 (307)
.+...-+..|+=.|.+ ||.|.+||-..+++ ++..+..-++-|...|++.++ ++.|++|+.|+.+
T Consensus 9 if~SekRk~lLllL~e--gPkti~EI~~~l~v---s~~ai~pqiKkL~~~~LV~~~-----------~~~Y~LS~~G~ii 72 (260)
T COG4742 9 LFLSEKRKDLLLLLKE--GPKTIEEIKNELNV---SSSAILPQIKKLKDKGLVVQE-----------GDRYSLSSLGKII 72 (260)
T ss_pred HHccHHHHHHHHHHHh--CCCCHHHHHHHhCC---CcHHHHHHHHHHhhCCCEEec-----------CCEEEecchHHHH
Confidence 4445567778888876 89999999999999 567888889999999999998 4999999999977
Q ss_pred hc
Q 037127 111 LK 112 (307)
Q Consensus 111 ~~ 112 (307)
+.
T Consensus 73 v~ 74 (260)
T COG4742 73 VE 74 (260)
T ss_pred HH
Confidence 64
No 320
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=92.98 E-value=0.13 Score=39.17 Aligned_cols=53 Identities=11% Similarity=0.373 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL 111 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~ 111 (307)
++.|..+||+.+++ +...+.++++.|...|++.+... ..+. .+.+|+.|+.+.
T Consensus 42 ~~~t~~eL~~~l~~---~~stvs~~i~~Le~kg~I~r~~~-------~~D~R~~~i~lT~~G~~~~ 97 (109)
T TIGR01889 42 GKLTLKEIIKEILI---KQSALVKIIKKLSKKGYLSKERS-------EDDERKVIISINKEQRSKI 97 (109)
T ss_pred CcCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeccCC-------cccCCeEEEEECHHHHHHH
Confidence 68999999999999 67999999999999999998763 2233 377888887554
No 321
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=92.92 E-value=0.1 Score=40.58 Aligned_cols=55 Identities=16% Similarity=0.300 Sum_probs=46.2
Q ss_pred HHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 29 SMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 29 ~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
.+.+-+--.+-|++.|+.. +|.|..|+|+..|- +...+.|-|+.|...|++..+.
T Consensus 58 la~vLsp~nleLl~~Ia~~-~P~Si~ElAe~vgR---dv~nvhr~Ls~l~~~GlI~fe~ 112 (144)
T COG4190 58 LARVLSPRNLELLELIAQE-EPASINELAELVGR---DVKNVHRTLSTLADLGLIFFEE 112 (144)
T ss_pred HHHHhChhHHHHHHHHHhc-CcccHHHHHHHhCc---chHHHHHHHHHHHhcCeEEEec
Confidence 3334444467788888875 89999999999999 7899999999999999999986
No 322
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=92.89 E-value=0.2 Score=33.30 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
++.|..+|++.+++ +...+.+.|+.|...|++....
T Consensus 9 ~~~~~~~i~~~l~i---s~~~v~~~l~~L~~~g~i~~~~ 44 (66)
T smart00418 9 GELCVCELAEILGL---SQSTVSHHLKKLREAGLVESRR 44 (66)
T ss_pred CCccHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeeee
Confidence 78999999999999 5688999999999999999765
No 323
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=92.84 E-value=0.99 Score=37.76 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=68.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---C---CCccEEEec
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I---PPADAVVLK 262 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~---p~~D~i~~~ 262 (307)
...++||+=+|+|..+.+.+.+.- .+++.+|. ..++..+++ ...++.++..|...- . +.||+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 367999999999999999999863 47899998 666666655 358889999888741 1 139999987
Q ss_pred hhhcc-CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 263 WILHD-WNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 263 ~vLh~-~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
=..+. .-+.+..-++-.-...|+| +.++++|.-..
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~----~~~iv~E~~~~ 157 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKP----GALIVVEHDKD 157 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCC----CcEEEEEeCCC
Confidence 77661 2221212222223456887 56677776544
No 324
>PRK06474 hypothetical protein; Provisional
Probab=92.78 E-value=0.13 Score=42.80 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=54.9
Q ss_pred HHHHHHHHhCCcccccccCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127 29 SMSLKCAVELSIPDIINKHGKPTTLNDLVSAL-TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS 107 (307)
Q Consensus 29 ~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~-g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s 107 (307)
..+|....++.|++.|...+++.|+.+|++.+ ++ +...+.|.|+.|...|++...... +-.++.+..|++++.+
T Consensus 5 ~~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~i---s~aTvYrhL~~L~e~GLI~~~~~~--~~~~~~ek~y~~~~~~ 79 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNKEGLTPLELVKILKDV---PQATLYRHLQTMVDSGILHVVKEK--KVRSVSEKYYAINEED 79 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecc--cccCceeEEEEeccce
Confidence 34566667788888887643459999999999 56 567899999999999999987521 0011223468888766
Q ss_pred chh
Q 037127 108 KLL 110 (307)
Q Consensus 108 ~~l 110 (307)
-.+
T Consensus 80 ~~~ 82 (178)
T PRK06474 80 AKI 82 (178)
T ss_pred eee
Confidence 443
No 325
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=92.72 E-value=0.21 Score=41.63 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=40.1
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
..|+++|..+ |++|.++||..+|+ ....++++|..|...|++....
T Consensus 25 ~~Vl~~L~~~-g~~tdeeLA~~Lgi---~~~~VRk~L~~L~e~gLv~~~r 70 (178)
T PRK06266 25 FEVLKALIKK-GEVTDEEIAEQTGI---KLNTVRKILYKLYDARLADYKR 70 (178)
T ss_pred hHHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEee
Confidence 3378888775 69999999999999 6899999999999999999543
No 326
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=92.53 E-value=0.16 Score=32.45 Aligned_cols=42 Identities=12% Similarity=0.308 Sum_probs=35.5
Q ss_pred cccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 42 DIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 42 d~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+.|..+ ++.|+.+||+.+++ +...+.+.|..|...|++.+..
T Consensus 7 ~~l~~~-~~~s~~~l~~~l~~---s~~tv~~~l~~L~~~g~i~~~~ 48 (53)
T smart00420 7 ELLAQQ-GKVSVEELAELLGV---SEMTIRRDLNKLEEQGLLTRVH 48 (53)
T ss_pred HHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEee
Confidence 334433 57999999999999 6799999999999999999874
No 327
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=92.52 E-value=0.15 Score=43.67 Aligned_cols=57 Identities=18% Similarity=0.345 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 27 INSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 27 ~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
-..++|.+.++..|+..|+.. +|+.+.|||+++|+ +..-+..-+..|...|+++-+.
T Consensus 15 dv~kalaS~vRv~Il~lL~~k-~plNvneiAe~lgL---pqst~s~~ik~Le~aGlirT~t 71 (308)
T COG4189 15 DVLKALASKVRVAILQLLHRK-GPLNVNEIAEALGL---PQSTMSANIKVLEKAGLIRTET 71 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCC---chhhhhhhHHHHHhcCceeeee
Confidence 346788888999999999986 79999999999999 6788899999999999998764
No 328
>PRK10870 transcriptional repressor MprA; Provisional
Probab=92.49 E-value=0.27 Score=40.86 Aligned_cols=64 Identities=16% Similarity=0.206 Sum_probs=49.0
Q ss_pred CcccccccC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127 39 SIPDIINKH-GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK 112 (307)
Q Consensus 39 glfd~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~ 112 (307)
-++..|... ++++|..+||+.+++ +...+.+++.-|...|++++... ..++ .+.+|+.|+.+..
T Consensus 59 ~iL~~L~~~~~~~it~~eLa~~l~l---~~~tvsr~v~rLe~kGlV~R~~~-------~~DrR~~~v~LT~~G~~~~~ 126 (176)
T PRK10870 59 MALITLESQENHSIQPSELSCALGS---SRTNATRIADELEKRGWIERRES-------DNDRRCLHLQLTEKGHEFLR 126 (176)
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCC-------CCCCCeeEEEECHHHHHHHH
Confidence 344455422 367999999999999 67899999999999999999863 1232 5789999987664
No 329
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=92.33 E-value=1.1 Score=42.66 Aligned_cols=103 Identities=18% Similarity=0.270 Sum_probs=73.9
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC--CccEEEechhhccC-C
Q 037127 199 SLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP--PADAVVLKWILHDW-N 269 (307)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~-~ 269 (307)
+++-+|||.-.+...+-+.. .-.++-+|. +.+++.... ..+...+...|+.. .++ .+|+++....++.+ .
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 78999999998888776642 124677788 444544433 34567888899988 455 59999999999874 3
Q ss_pred hhH-------HHHHHHHHHHhccCCCCCcEEEEEeee--cCCCCC
Q 037127 270 DEE-------CVKILKKCKEAITSNSKIGKVIIIDMM--RENKKG 305 (307)
Q Consensus 270 ~~~-------~~~~L~~~~~~L~p~~~gg~lli~e~~--~~~~~~ 305 (307)
+++ +...+..+++.+++ ||+.+.+... .|-.+.
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~---~gk~~svtl~~~vp~~r~ 171 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAP---GGKYISVTLVQVVPQGRK 171 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhcc---CCEEEEEEeeeeccCCCC
Confidence 332 23467899999998 8999888874 554443
No 330
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=91.95 E-value=3.3 Score=38.76 Aligned_cols=104 Identities=19% Similarity=0.252 Sum_probs=62.9
Q ss_pred CCCeEEEecCCchHHHHHH--------HHH-------CCCCeEEEecchH-----HHHhchh--------------cCCC
Q 037127 196 GLNSLVDVGGATGTVAKAI--------AKA-------FPNLECTDFDLPH-----VVNGLES--------------DLAN 241 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l--------~~~-------~p~~~~~~~Dl~~-----~~~~a~~--------------~~~r 241 (307)
+..+|+|+|||+|..+..+ .++ -|..++..=|+|. +...... ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 4668999999999665322 232 3567888888862 1111111 0112
Q ss_pred ---eEEEecCCCC-CCC--CccEEEechhhccCCh---h---------------------------------HHHHHHHH
Q 037127 242 ---LKYVGGDMFE-AIP--PADAVVLKWILHDWND---E---------------------------------ECVKILKK 279 (307)
Q Consensus 242 ---v~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~---~---------------------------------~~~~~L~~ 279 (307)
+.-++|.|+. -+| ..++++.+..||-.+. + +-..+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2334578877 366 3899999999883331 0 12234554
Q ss_pred HHHhccCCCCCcEEEEEeeecCC
Q 037127 280 CKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 280 ~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
=++=|.| ||++++.=.-+++
T Consensus 223 Ra~ELvp---GG~mvl~~~Gr~~ 242 (386)
T PLN02668 223 RAQEMKR---GGAMFLVCLGRTS 242 (386)
T ss_pred HHHHhcc---CcEEEEEEecCCC
Confidence 5566777 9999988766653
No 331
>PRK10742 putative methyltransferase; Provisional
Probab=91.85 E-value=0.5 Score=41.35 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=71.1
Q ss_pred HHHHHhccccccCCC--eEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----c----------CCCeEEEe
Q 037127 184 RVVIHKCKNVFEGLN--SLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----D----------LANLKYVG 246 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~--~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~----------~~rv~~~~ 246 (307)
+.+++++. +++.. +|||+=+|.|..+..++.+ +.+++.+|. |.+....+. . ..|++++.
T Consensus 76 ~~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred cHHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 34556555 44444 8999999999999999998 778999999 444443332 1 15799999
Q ss_pred cCCCC---CCC-CccEEEech----------------hhccC--ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 247 GDMFE---AIP-PADAVVLKW----------------ILHDW--NDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 247 ~d~~~---~~p-~~D~i~~~~----------------vLh~~--~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
+|..+ ..+ .||+|++-= ++|.+ .+.+...+|..+.++-+ -+|++=++...
T Consensus 152 ~da~~~L~~~~~~fDVVYlDPMfp~~~ksa~vkk~mr~~~~l~g~d~d~~~lL~~Al~~A~-----kRVVVKrp~~a 223 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLAT-----KRVVVKRPDYA 223 (250)
T ss_pred CcHHHHHhhCCCCCcEEEECCCCCCCccccchhhhHHHHHHhcCCCCChHHHHHHHHHhcC-----ceEEEecCCCC
Confidence 98766 223 489887531 23221 23334567777766654 47777665543
No 332
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=91.78 E-value=0.22 Score=28.94 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=25.6
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCce
Q 037127 50 PTTLNDLVSALTINPSKTRCVYRLMRILIHSGFF 83 (307)
Q Consensus 50 ~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l 83 (307)
|+|-+|||+.+|+ ..+-+.|+|..|...|++
T Consensus 2 ~mtr~diA~~lG~---t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL---TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC---cHHHHHHHHHHHHHcCCC
Confidence 5788999999999 579999999999998874
No 333
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=91.72 E-value=0.22 Score=34.31 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=37.0
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+.++..|.. ++.+..+||+.+|+ ....+++.++.|.+.|+.....
T Consensus 3 ~~il~~L~~--~~~~~~eLa~~l~v---S~~tv~~~l~~L~~~g~~i~~~ 47 (69)
T TIGR00122 3 LRLLALLAD--NPFSGEKLGEALGM---SRTAVNKHIQTLREWGVDVLTV 47 (69)
T ss_pred HHHHHHHHc--CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 345566764 68999999999999 6799999999999999966553
No 334
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=91.70 E-value=0.25 Score=32.31 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=32.4
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCcee
Q 037127 40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFA 84 (307)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~ 84 (307)
|+..|...++++|.++||+.+++ +.+.+++-+..|...|+.-
T Consensus 5 il~~L~~~~~~it~~eLa~~l~v---S~rTi~~~i~~L~~~~~~I 46 (55)
T PF08279_consen 5 ILKLLLESKEPITAKELAEELGV---SRRTIRRDIKELREWGIPI 46 (55)
T ss_dssp HHHHHHHTTTSBEHHHHHHHCTS----HHHHHHHHHHHHHTT-EE
T ss_pred HHHHHHHcCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeE
Confidence 34445333467999999999999 6899999999999999333
No 335
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=91.66 E-value=0.25 Score=37.76 Aligned_cols=47 Identities=21% Similarity=0.388 Sum_probs=38.5
Q ss_pred CcccccccCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeecc
Q 037127 39 SIPDIINKHGKPTTLNDLVSAL-----TINPSKTRCVYRLMRILIHSGFFAQQTL 88 (307)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~-----g~~~~~~~~l~r~L~~L~~~g~l~~~~~ 88 (307)
-|++.|...+++.|++||.+.+ ++ +...+.|.|+.|...|++.+...
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i---~~~TVYR~L~~L~~~Gli~~~~~ 56 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSI---SLATVYRTLELLEEAGLVREIEL 56 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhCCCEEEEEe
Confidence 4566666545799999999998 34 57889999999999999998863
No 336
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=91.63 E-value=2.9 Score=36.38 Aligned_cols=93 Identities=14% Similarity=0.080 Sum_probs=53.8
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC-----CccEEEechhh
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP-----PADAVVLKWIL 265 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p-----~~D~i~~~~vL 265 (307)
.+++||=||=.- ..+.+++-.++..+++++|+ +.+++..++ ..-.|+.+..|+.+++| .||+++.-=
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP-- 120 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP-- 120 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC--
Confidence 467899998554 44555555566679999999 666666554 33349999999999877 389877642
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEE
Q 037127 266 HDWNDEECVKILKKCKEAITSNSKIGKVI 294 (307)
Q Consensus 266 h~~~~~~~~~~L~~~~~~L~p~~~gg~ll 294 (307)
.|+.+-..-++.+..++|+. +|+..+
T Consensus 121 -PyT~~G~~LFlsRgi~~Lk~--~g~~gy 146 (243)
T PF01861_consen 121 -PYTPEGLKLFLSRGIEALKG--EGCAGY 146 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-S--TT-EEE
T ss_pred -CCCHHHHHHHHHHHHHHhCC--CCceEE
Confidence 25667778899999999997 354443
No 337
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=91.39 E-value=0.24 Score=36.24 Aligned_cols=68 Identities=15% Similarity=0.192 Sum_probs=47.3
Q ss_pred HHHhCCcccccccC-CCCCCHHHHHHHcCCCCCCcccHHHHHH----------HHHhCCce-eeeccCCCCCCCCCCCee
Q 037127 34 CAVELSIPDIINKH-GKPTTLNDLVSALTINPSKTRCVYRLMR----------ILIHSGFF-AQQTLNSSRNNNDEEQGY 101 (307)
Q Consensus 34 ~a~~lglfd~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~r~L~----------~L~~~g~l-~~~~~~~~~~~~~~~~~y 101 (307)
+=++..|+..|... ..+.++.|||..++. ++..+..-|+ .|+.+|++ .+... ++...|
T Consensus 8 S~~R~~vl~~L~~~yp~~~~~~eIar~v~~---~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~-------~g~k~Y 77 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYPEPAYPSEIARSVGS---DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEK-------GGFKYY 77 (90)
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHCC---CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeec-------CCeeEE
Confidence 33455666666554 478999999999999 5566665554 58999999 44431 223479
Q ss_pred ecChhcchhh
Q 037127 102 VLTNASKLLL 111 (307)
Q Consensus 102 ~~t~~s~~l~ 111 (307)
++|+.|+.++
T Consensus 78 ~lT~~G~~~~ 87 (90)
T PF07381_consen 78 RLTEKGKRIA 87 (90)
T ss_pred EeChhhhhHH
Confidence 9999988654
No 338
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=91.19 E-value=0.44 Score=35.24 Aligned_cols=44 Identities=9% Similarity=0.012 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecC
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLT 104 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t 104 (307)
.++|..|||+.+|+ +...+.|.|..|...|++..... .+.|..+
T Consensus 46 ~~is~~eLa~~~g~---sr~tVsr~L~~Le~~GlI~r~~~---------~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGL---SRTHVSDAIKSLARRRIIFRQGM---------MGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeecC---------CceeecC
Confidence 68999999999999 57899999999999999998742 4777776
No 339
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=91.17 E-value=0.36 Score=32.47 Aligned_cols=37 Identities=19% Similarity=0.404 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+++++..+||+.+|+ .+..+...+.-|...|+++.++
T Consensus 20 ~~~v~~~~iA~~L~v---s~~tvt~ml~~L~~~GlV~~~~ 56 (60)
T PF01325_consen 20 GGPVRTKDIAERLGV---SPPTVTEMLKRLAEKGLVEYEP 56 (60)
T ss_dssp TSSBBHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred CCCccHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecC
Confidence 489999999999999 5788999999999999999985
No 340
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=91.16 E-value=0.19 Score=38.10 Aligned_cols=39 Identities=18% Similarity=0.496 Sum_probs=30.9
Q ss_pred ccEEEechhh---c-cCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 256 ADAVVLKWIL---H-DWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 256 ~D~i~~~~vL---h-~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
||+|+|-.|. | +|.|+-..++++++++.|+| |.++|+|+
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p----GG~lilEp 44 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP----GGILILEP 44 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEE-
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC----CCEEEEeC
Confidence 7999888764 4 48899999999999999999 56666665
No 341
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=90.60 E-value=0.13 Score=37.93 Aligned_cols=54 Identities=15% Similarity=0.293 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
+++....-|.-.+++ +-...+.+++.|+..|++..... +....|.+|+.|+.+.
T Consensus 29 ~~~~~~Tri~y~aNl---ny~~~~~yi~~L~~~Gli~~~~~-------~~~~~y~lT~KG~~fl 82 (95)
T COG3432 29 EGGIGITRIIYGANL---NYKRAQKYIEMLVEKGLIIKQDN-------GRRKVYELTEKGKRFL 82 (95)
T ss_pred CCCCCceeeeeecCc---CHHHHHHHHHHHHhCCCEEeccC-------CccceEEEChhHHHHH
Confidence 378888899999999 78999999999999997776651 1123799999999664
No 342
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=90.49 E-value=0.5 Score=40.61 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=50.3
Q ss_pred HHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchh
Q 037127 31 SLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLL 110 (307)
Q Consensus 31 ~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l 110 (307)
+|+....+| ++... ..+|..+||+.+++ +...+.|.|+.|...|++++... .....+++|+.|+.+
T Consensus 6 ~Lk~iallg---~l~~~-~~IS~~eLA~~L~i---S~~Tvsr~Lk~LEe~GlI~R~~~-------~r~~~v~LTekG~~l 71 (217)
T PRK14165 6 ALKKLALLG---AVNNT-VKISSSEFANHTGT---SSKTAARILKQLEDEGYITRTIV-------PRGQLITITEKGLDV 71 (217)
T ss_pred HHHHHHHHh---ccCCC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEEc-------CCceEEEECHHHHHH
Confidence 344444444 34432 56999999999999 67999999999999999998852 123579999988855
Q ss_pred h
Q 037127 111 L 111 (307)
Q Consensus 111 ~ 111 (307)
.
T Consensus 72 l 72 (217)
T PRK14165 72 L 72 (217)
T ss_pred H
Confidence 4
No 343
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=90.48 E-value=0.53 Score=33.35 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchh
Q 037127 48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLL 110 (307)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l 110 (307)
+.|+...+||+.+++ ++--++..+..|.++|+++..+- ..+.|..|..+-.+
T Consensus 21 ~~PVgSk~ia~~l~~---s~aTIRN~M~~Le~lGlve~~p~--------~s~GriPT~~aYr~ 72 (78)
T PF03444_consen 21 GEPVGSKTIAEELGR---SPATIRNEMADLEELGLVESQPH--------PSGGRIPTDKAYRA 72 (78)
T ss_pred CCCcCHHHHHHHHCC---ChHHHHHHHHHHHHCCCccCCCC--------CCCCCCcCHHHHHH
Confidence 589999999999999 56889999999999999986431 14778888776533
No 344
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=90.31 E-value=0.42 Score=39.53 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHc--CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcch
Q 037127 49 KPTTLNDLVSAL--TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKL 109 (307)
Q Consensus 49 ~~~t~~eLA~~~--g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~ 109 (307)
+..++.+||+++ ++ +.+.++.-|+.|..+|++++.+ +|.|..|..+-.
T Consensus 38 ~~~d~~~iak~l~p~i---s~~ev~~sL~~L~~~gli~k~~----------~g~y~~t~~~l~ 87 (171)
T PF14394_consen 38 FAPDPEWIAKRLRPKI---SAEEVRDSLEFLEKLGLIKKDG----------DGKYVQTDKSLT 87 (171)
T ss_pred CCCCHHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEECC----------CCcEEEecceee
Confidence 344999999999 88 6899999999999999999996 589999976544
No 345
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=90.29 E-value=0.22 Score=37.52 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=39.3
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (307)
+..|+.+|..+ ++.|..+||+.+|+ ++..+.+.++.|...|++...
T Consensus 5 D~~il~~L~~~-~~~~~~~la~~l~~---s~~tv~~~l~~L~~~g~i~~~ 50 (108)
T smart00344 5 DRKILEELQKD-ARISLAELAKKVGL---SPSTVHNRVKRLEEEGVIKGY 50 (108)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeece
Confidence 45567777764 68999999999999 679999999999999999954
No 346
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=90.26 E-value=0.4 Score=33.91 Aligned_cols=42 Identities=10% Similarity=0.129 Sum_probs=37.6
Q ss_pred cccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 42 DIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 42 d~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
|+|..+ |-.++.+||..+++ +++.++.+|+.++.+|-+++.+
T Consensus 9 d~l~~~-gr~s~~~Ls~~~~~---p~~~VeaMLe~l~~kGkverv~ 50 (78)
T PRK15431 9 DLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_pred HHHHHc-CcccHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence 556665 78999999999999 6899999999999999999885
No 347
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=90.24 E-value=0.34 Score=46.35 Aligned_cols=54 Identities=24% Similarity=0.442 Sum_probs=45.3
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCC
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDM 249 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~ 249 (307)
++..+.++|+=||||.++..+++.. .+++++++ |+.++.|+. ...+.+|++|-.
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqa 440 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQA 440 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecch
Confidence 4556889999999999999999874 57999998 888888876 567899999933
No 348
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=90.21 E-value=0.29 Score=39.89 Aligned_cols=46 Identities=15% Similarity=0.057 Sum_probs=39.1
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
..|+++|..+ +.+|-++||+.+|+ +...++++|..|...|++....
T Consensus 17 v~Vl~aL~~~-~~~tdEeLa~~Lgi---~~~~VRk~L~~L~e~~Lv~~~r 62 (158)
T TIGR00373 17 GLVLFSLGIK-GEFTDEEISLELGI---KLNEVRKALYALYDAGLADYKR 62 (158)
T ss_pred HHHHHHHhcc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCceeee
Confidence 3467777755 68999999999999 6899999999999999996543
No 349
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=89.46 E-value=0.28 Score=47.63 Aligned_cols=65 Identities=25% Similarity=0.329 Sum_probs=51.5
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcC
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKD 113 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~ 113 (307)
+..++..|... ++.|..+||+.+++ +...+.++++.|.+.|+++.... ....|.+|+.|+.++..
T Consensus 8 e~~vL~~L~~~-~~~s~~eLA~~l~l---~~~tVt~~i~~Le~kGlV~~~~~--------~~~~i~LTeeG~~~~~~ 72 (489)
T PRK04172 8 EKKVLKALKEL-KEATLEELAEKLGL---PPEAVMRAAEWLEEKGLVKVEER--------VEEVYVLTEEGKKYAEE 72 (489)
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCEEEEee--------eEEEEEECHHHHHHHHh
Confidence 34445555543 68999999999999 67999999999999999998752 13579999999966653
No 350
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=89.38 E-value=3.9 Score=36.99 Aligned_cols=97 Identities=13% Similarity=0.186 Sum_probs=64.5
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecch--------HHHHhch-------------------------h------
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDLP--------HVVNGLE-------------------------S------ 237 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~--------~~~~~a~-------------------------~------ 237 (307)
..+||-=|||.|.++-.|+...+.+++- +.+ -++...+ +
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGN--EfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGN--EFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred CceEEecCCCchhHHHHHHHhccccccc--HHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 5678999999999999999988776652 111 1111110 0
Q ss_pred -------cCCCeEEEecCCCCC--CC----CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 238 -------DLANLKYVGGDMFEA--IP----PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 238 -------~~~rv~~~~~d~~~~--~p----~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
..+..+.-.|||.+- .+ .+|+|+..+.+- +.......|+.+.+.|+| ||.++=+-+.+
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~---GGvWiNlGPLl 299 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKP---GGVWINLGPLL 299 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccC---CcEEEecccee
Confidence 122345566899872 22 389988776654 344568999999999998 88777655543
No 351
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=89.35 E-value=0.62 Score=32.46 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=40.1
Q ss_pred HHHHHHhCCcc-----cccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 31 SLKCAVELSIP-----DIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 31 ~L~~a~~lglf-----d~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
.+..+-+.|.. ..+. -+.|-++||+.+|+ ....+.++|+.|...|++....
T Consensus 7 Ll~l~~~~~~~~~~~~~~~~---~~lt~~~iA~~~g~---sr~tv~r~l~~l~~~g~I~~~~ 62 (76)
T PF13545_consen 7 LLELAERFGRRQDGDGIRIP---LPLTQEEIADMLGV---SRETVSRILKRLKDEGIIEVKR 62 (76)
T ss_dssp HHHHHHHHEEEEETTEEEEE---EESSHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHCCCCCCCCceEE---ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEcC
Confidence 34455555554 2333 58999999999999 5789999999999999999874
No 352
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=88.66 E-value=0.46 Score=34.94 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=39.1
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+.|+..|... +|=.+.-||..+++ +...+...|+-|..+|++++..
T Consensus 10 ~~IL~hl~~~-~~Dy~k~ia~~l~~---~~~~v~~~l~~Le~~GLler~~ 55 (92)
T PF10007_consen 10 LKILQHLKKA-GPDYAKSIARRLKI---PLEEVREALEKLEEMGLLERVE 55 (92)
T ss_pred HHHHHHHHHH-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 3455556554 68899999999999 6899999999999999999996
No 353
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.61 E-value=0.21 Score=40.28 Aligned_cols=41 Identities=24% Similarity=0.339 Sum_probs=37.2
Q ss_pred CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.+|+|++.||+.+++-++....++.|++.|+| ||++-|.=+
T Consensus 47 s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp---~G~LriAvP 87 (185)
T COG4627 47 SVDAIYAEHVLEHLTYDEGTSALKECHRFLRP---GGKLRIAVP 87 (185)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---CcEEEEEcC
Confidence 48999999999999999999999999999999 898887643
No 354
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=88.15 E-value=0.57 Score=36.26 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=43.4
Q ss_pred HHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 34 CAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 34 ~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
..+...|.+.+.++ |.+|+.+++..+|+ +-..++++++.|++.|-|...+
T Consensus 11 ~eLk~rIvElVRe~-GRiTi~ql~~~TGa---sR~Tvk~~lreLVa~G~l~~~G 60 (127)
T PF06163_consen 11 EELKARIVELVREH-GRITIKQLVAKTGA---SRNTVKRYLRELVARGDLYRHG 60 (127)
T ss_pred HHHHHHHHHHHHHc-CCccHHHHHHHHCC---CHHHHHHHHHHHHHcCCeEeCC
Confidence 34566677888876 79999999999999 6799999999999999999874
No 355
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=88.12 E-value=8.1 Score=35.89 Aligned_cols=102 Identities=18% Similarity=0.224 Sum_probs=68.4
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCC--CeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC---CCC---CccEE
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPN--LECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE---AIP---PADAV 259 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~---~~p---~~D~i 259 (307)
...+.+|||.-.+.|.=+.++++.-++ ..++.+|. +.=+...++ ...++.....|... ..+ .||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 456789999999999999999988876 55689998 433333332 34446777777643 122 28888
Q ss_pred Eech-------------hhccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 260 VLKW-------------ILHDWNDEE-------CVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 260 ~~~~-------------vLh~~~~~~-------~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
++-- +...|..++ -.+||.++.+.+|| ||+|+-..-
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~---GG~LVYSTC 289 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP---GGVLVYSTC 289 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEcc
Confidence 6532 223444442 25689999999998 777765443
No 356
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=87.97 E-value=0.68 Score=38.78 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=49.3
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK 112 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~ 112 (307)
..++..|... +++|..+||+.+++ +...+.++++-|...|++.+... .++. ...+|+.|+.+..
T Consensus 48 ~~iL~~L~~~-~~itq~eLa~~l~l---~~sTvtr~l~rLE~kGlI~R~~~-------~~DrR~~~I~LTekG~~l~~ 114 (185)
T PRK13777 48 HHILWIAYHL-KGASISEIAKFGVM---HVSTAFNFSKKLEERGYLTFSKK-------EDDKRNTYIELTEKGEELLL 114 (185)
T ss_pred HHHHHHHHhC-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEecCC-------CCCCCeeEEEECHHHHHHHH
Confidence 3455566554 68999999999999 56789999999999999998752 1233 4889999986653
No 357
>PHA02943 hypothetical protein; Provisional
Probab=87.85 E-value=0.69 Score=37.03 Aligned_cols=43 Identities=9% Similarity=0.122 Sum_probs=37.3
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+++.|. +|..|..|||+++|+ +...++-.|..|...|.+.+.+
T Consensus 16 ILE~Lk--~G~~TtseIAkaLGl---S~~qa~~~LyvLErEG~VkrV~ 58 (165)
T PHA02943 16 TLRLLA--DGCKTTSRIANKLGV---SHSMARNALYQLAKEGMVLKVE 58 (165)
T ss_pred HHHHHh--cCCccHHHHHHHHCC---CHHHHHHHHHHHHHcCceEEEe
Confidence 455563 378999999999999 6799999999999999999986
No 358
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=87.68 E-value=1.9 Score=39.71 Aligned_cols=63 Identities=21% Similarity=0.375 Sum_probs=41.8
Q ss_pred CcHHHHHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHH----CC----CCeEEEecchHHH
Q 037127 164 EPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA----FP----NLECTDFDLPHVV 232 (307)
Q Consensus 164 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~----~p----~~~~~~~Dl~~~~ 232 (307)
.|+..+.|.+..+.+- .+.+ ..+. .+.+-++|++|.|+|.++..+++. +| .+++.+++.++-+
T Consensus 51 Apels~lFGella~~~---~~~w-q~~g--~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L 121 (370)
T COG1565 51 APELSQLFGELLAEQF---LQLW-QELG--RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPEL 121 (370)
T ss_pred chhHHHHHHHHHHHHH---HHHH-HHhc--CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHH
Confidence 4678888887765432 2222 2222 345678999999999999888654 44 5688999984433
No 359
>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]
Probab=87.52 E-value=1.7 Score=35.16 Aligned_cols=79 Identities=22% Similarity=0.325 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHhCCc-------ccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCC
Q 037127 22 HIFNFINSMSLKCAVELSI-------PDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNN 94 (307)
Q Consensus 22 ~~~g~~~~~~L~~a~~lgl-------fd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~ 94 (307)
.+++-|...|+.+|.+.++ +..+...|.|+++.+|+..++.. |...+..-|+-|...|+++..+.
T Consensus 63 ~Af~rW~vrCmAaag~~~ls~~e~l~lH~irhrdR~K~laDic~~ln~e--Dth~itYslrKL~k~gLit~t~~------ 134 (199)
T COG5631 63 EAFGRWQVRCMAAAGEFSLSGPENLLLHIIRHRDRPKSLADICQMLNRE--DTHNITYSLRKLLKGGLITRTGS------ 134 (199)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCchhhHHHHHHHhccc--cchhHHHHHHHHHhccceecCCC------
Confidence 4567778888888866554 23344346899999999999996 78889999999999999998762
Q ss_pred CCCCCeeecChhcch
Q 037127 95 NDEEQGYVLTNASKL 109 (307)
Q Consensus 95 ~~~~~~y~~t~~s~~ 109 (307)
+-+-+|..|+.|..
T Consensus 135 -gkevTy~vTa~G~~ 148 (199)
T COG5631 135 -GKEVTYEVTALGHR 148 (199)
T ss_pred -CceEEEEEecchHH
Confidence 22357999988763
No 360
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=87.45 E-value=1.4 Score=41.59 Aligned_cols=90 Identities=16% Similarity=0.171 Sum_probs=59.5
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CC-CC--ccEEEech
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AI-PP--ADAVVLKW 263 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~-p~--~D~i~~~~ 263 (307)
.+...|||||.|||.++...+++..+ .++.++. .+|.+.|++ ..++|+++.---.+ .+ |. +|+++---
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~ 143 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVRED 143 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhh
Confidence 45567999999999999999998755 5888898 788888877 46677775542222 11 22 66554443
Q ss_pred hhccCChhHHHHHHHHHHHhcc
Q 037127 264 ILHDWNDEECVKILKKCKEAIT 285 (307)
Q Consensus 264 vLh~~~~~~~~~~L~~~~~~L~ 285 (307)
+.-..--+-+..-++++.+.|.
T Consensus 144 fdtEligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 144 FDTELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhhhhccccchhHHHHHHHhc
Confidence 3333333334566777777764
No 361
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=87.35 E-value=1.3 Score=29.85 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=38.6
Q ss_pred HHHHHHHhCCcccccccCCCCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 30 MSLKCAVELSIPDIINKHGKPT-TLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 30 ~~L~~a~~lglfd~L~~~~~~~-t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
..|...+..|-+. .|..+ |..+||+.+++ +..-+++.|+.|.+.|+++..+
T Consensus 7 ~~l~~~I~~g~~~----~g~~lps~~~la~~~~v---sr~tvr~al~~L~~~g~i~~~~ 58 (64)
T PF00392_consen 7 DQLRQAILSGRLP----PGDRLPSERELAERYGV---SRTTVREALRRLEAEGLIERRP 58 (64)
T ss_dssp HHHHHHHHTTSS-----TTSBE--HHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHcCCCC----CCCEeCCHHHHHHHhcc---CCcHHHHHHHHHHHCCcEEEEC
Confidence 3445555555553 24678 99999999999 6789999999999999999986
No 362
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=87.19 E-value=0.46 Score=41.95 Aligned_cols=49 Identities=29% Similarity=0.411 Sum_probs=42.9
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecc
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTL 88 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~ 88 (307)
+..+.++|..+||-++-+||.+++|. +..-++|.|+-|...|++++.+.
T Consensus 197 e~~il~~i~~~GGri~Q~eL~r~lgl---sktTvsR~L~~LEk~GlIe~~K~ 245 (258)
T COG2512 197 EKEILDLIRERGGRITQAELRRALGL---SKTTVSRILRRLEKRGLIEKEKK 245 (258)
T ss_pred HHHHHHHHHHhCCEEeHHHHHHhhCC---ChHHHHHHHHHHHhCCceEEEEe
Confidence 44566677777888999999999999 57899999999999999999985
No 363
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=87.15 E-value=1.9 Score=37.82 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=25.3
Q ss_pred CCeEEEecCCchHHHHHHHHHCCC--------CeEEEecchH
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPN--------LECTDFDLPH 230 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~--------~~~~~~Dl~~ 230 (307)
+-+|+++|+|+|.++..+++.... ++++.++.++
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp 60 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISP 60 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCH
Confidence 468999999999999998875443 4899999843
No 364
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=86.90 E-value=0.47 Score=40.96 Aligned_cols=63 Identities=13% Similarity=0.228 Sum_probs=49.4
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcCCCCChHHHHHH
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQA 124 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~ 124 (307)
..+...|||+.+|+ ..-++...++-|+..|++++.. .++|..|..|.....+.-..++.+...
T Consensus 24 p~v~q~eIA~~lgi---T~QaVsehiK~Lv~eG~i~~~g----------R~~Y~iTkkG~e~l~~~~~dlr~f~~e 86 (260)
T COG1497 24 PRVKQKEIAKKLGI---TLQAVSEHIKELVKEGLIEKEG----------RGEYEITKKGAEWLLEQLSDLRRFSEE 86 (260)
T ss_pred CCCCHHHHHHHcCC---CHHHHHHHHHHHHhccceeecC----------CeeEEEehhHHHHHHHHHHHHHHHHHH
Confidence 57899999999999 5689999999999999999975 579999999984443322234444443
No 365
>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3KE2_B.
Probab=86.22 E-value=0.66 Score=33.66 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS 107 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s 107 (307)
+..++..|-+.+|+ +.+-++..+.+|...|+-......+.|++ .|.|+++.=|
T Consensus 20 ~~~nvp~L~~~TGm---PrRT~Qd~i~aL~~~~I~~~Fvq~G~R~~---~GyY~i~~WG 72 (90)
T PF09904_consen 20 GERNVPALMEATGM---PRRTIQDTIKALPELGIECEFVQDGERNN---AGYYRISDWG 72 (90)
T ss_dssp S-B-HHHHHHHH------HHHHHHHHHGGGGGT-EEEEE--TTS-S-----EEEEEE-T
T ss_pred CCccHHHHHHHhCC---CHhHHHHHHHHhhcCCeEEEEEecCccCC---CCcEEeeecC
Confidence 44599999999999 68999999999999999887443334444 6789887543
No 366
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=85.98 E-value=0.49 Score=33.37 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=23.1
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHH
Q 037127 40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILI 78 (307)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~ 78 (307)
++..|.. |.|+|+++||.++|+ +.+.+...|..+-
T Consensus 29 LLr~LA~-G~PVt~~~LA~a~g~---~~e~v~~~L~~~p 63 (77)
T PF12324_consen 29 LLRLLAK-GQPVTVEQLAAALGW---PVEEVRAALAAMP 63 (77)
T ss_dssp HHHHHTT-TS-B-HHHHHHHHT-----HHHHHHHHHH-T
T ss_pred HHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHhCC
Confidence 6677876 699999999999999 5566666665543
No 367
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=85.96 E-value=5.4 Score=38.68 Aligned_cols=123 Identities=15% Similarity=0.272 Sum_probs=77.4
Q ss_pred CccccccCCcHHHHHHHHHHHhchhhhHHHHHHhccccc-cCCCeEEEecCCchHHHHHHHHH----CCCCeEEEecc-h
Q 037127 156 SFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVF-EGLNSLVDVGGATGTVAKAIAKA----FPNLECTDFDL-P 229 (307)
Q Consensus 156 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~-~~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~Dl-~ 229 (307)
..|+.+++++-....|+++.. ..+++..+... +....|.=+|+|.|=+....++. .-.++.++++- |
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai~-------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNP 405 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAIL-------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNP 405 (649)
T ss_pred hhhhhhhccchHHHHHHHHHH-------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCc
Confidence 346666777766666655432 33444443211 22567788999999777655433 23467788887 6
Q ss_pred HHHHhchh-----cCCCeEEEecCCCC-CCC--CccEEEechhhccCChhH-HHHHHHHHHHhccC
Q 037127 230 HVVNGLES-----DLANLKYVGGDMFE-AIP--PADAVVLKWILHDWNDEE-CVKILKKCKEAITS 286 (307)
Q Consensus 230 ~~~~~a~~-----~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~~~-~~~~L~~~~~~L~p 286 (307)
..+-..+. ...||+++..||.+ .-| .+|++ .+..|--|.|.| ...-|..+-+.|||
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~-VSELLGSFGDNELSPECLDG~q~fLkp 470 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADII-VSELLGSFGDNELSPECLDGAQKFLKP 470 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccch-HHHhhccccCccCCHHHHHHHHhhcCC
Confidence 65544443 57899999999998 333 47854 455555555432 23447777778998
No 368
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=85.74 E-value=1.1 Score=42.40 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecCh
Q 037127 48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTN 105 (307)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~ 105 (307)
|.|.|.++|++++++ +++.++++|+.|...|++.+.+ ++.|.+..
T Consensus 308 g~~~t~~~La~~l~~---~~~~v~~iL~~L~~agLI~~~~----------~g~~~l~r 352 (412)
T PRK04214 308 GKALDVDEIRRLEPM---GYDELGELLCELARIGLLRRGE----------RGQWVLAR 352 (412)
T ss_pred CCCCCHHHHHHHhCC---CHHHHHHHHHHHHhCCCeEecC----------CCceEecC
Confidence 479999999999999 6899999999999999999654 45676663
No 369
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=85.57 E-value=0.98 Score=39.68 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
|+.|+.|||+.+|+ +...+..+|+.|...|+++..+ +....|+.-+-..
T Consensus 29 g~~tA~eis~~sgv---P~~kvY~vl~sLe~kG~v~~~~--------g~P~~y~av~p~~ 77 (247)
T COG1378 29 GEATAKEISEASGV---PRPKVYDVLRSLEKKGLVEVIE--------GRPKKYRAVPPEE 77 (247)
T ss_pred CCccHHHHHHHcCC---CchhHHHHHHHHHHCCCEEeeC--------CCCceEEeCCHHH
Confidence 79999999999999 6899999999999999999985 2356787765544
No 370
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=85.55 E-value=6.6 Score=38.32 Aligned_cols=97 Identities=14% Similarity=0.155 Sum_probs=63.3
Q ss_pred cCCCeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCC-eEEEec---------------CCC------
Q 037127 195 EGLNSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLAN-LKYVGG---------------DMF------ 250 (307)
Q Consensus 195 ~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~r-v~~~~~---------------d~~------ 250 (307)
..+.+|+=+|+| .|..+...++.... +++++|. ++..+.+++.... +.+-.. ++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 347899999999 67788888888854 8999999 7788888763333 212110 110
Q ss_pred -CC-CCCccEEEechhhccCChhHHHHH-HHHHHHhccCCCCCcEEEEEee
Q 037127 251 -EA-IPPADAVVLKWILHDWNDEECVKI-LKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 251 -~~-~p~~D~i~~~~vLh~~~~~~~~~~-L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.+ ..++|+++-.--...-+. ..+ .+...+.++| ||+++.+-.
T Consensus 242 ~~~~~~gaDVVIetag~pg~~a---P~lit~~~v~~mkp---GgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKPA---PKLITAEMVASMKP---GSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCcccC---cchHHHHHHHhcCC---CCEEEEEcc
Confidence 01 135888876654422222 244 5999999998 898887754
No 371
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=85.47 E-value=0.73 Score=44.28 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=54.9
Q ss_pred HHhCCcccccccCCCC-CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc-
Q 037127 35 AVELSIPDIINKHGKP-TTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK- 112 (307)
Q Consensus 35 a~~lglfd~L~~~~~~-~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~- 112 (307)
+.+..|+..|... ++ .+.++||+.+|+ +...+.+.+..|.+.|+++..... ...|.+|+.|+..+.
T Consensus 3 ~~e~~iL~~l~~~-~~~~~~~~la~~~g~---~~~~v~~~~~~L~~kg~v~~~~~~--------~~~~~LT~eG~~~l~~ 70 (492)
T PLN02853 3 MAEEALLGALSNN-EEISDSGQFAASHGL---DHNEVVGVIKSLHGFRYVDAQDIK--------RETWVLTEEGKKYAAE 70 (492)
T ss_pred hHHHHHHHHHHhc-CCCCCHHHHHHHcCC---CHHHHHHHHHHHHhCCCEEEEEEE--------EEEEEECHHHHHHHHc
Confidence 3455666777653 44 799999999999 679999999999999999888642 468999999995554
Q ss_pred CCCC
Q 037127 113 DSPL 116 (307)
Q Consensus 113 ~~~~ 116 (307)
.+|.
T Consensus 71 G~PE 74 (492)
T PLN02853 71 GSPE 74 (492)
T ss_pred CCHH
Confidence 4543
No 372
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.44 E-value=8.5 Score=34.82 Aligned_cols=106 Identities=14% Similarity=0.284 Sum_probs=76.4
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHC--CCCeEEEecchHHHHh-ch---h-----------------------cCCCeEE
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAF--PNLECTDFDLPHVVNG-LE---S-----------------------DLANLKY 244 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl~~~~~~-a~---~-----------------------~~~rv~~ 244 (307)
..+...||-+|||.=.....|...+ +.+.++-+|.|++++. .. + ...|...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 4567889999999999999999888 7788888888877653 21 0 1234555
Q ss_pred EecCCCC--CC----------CC-ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 245 VGGDMFE--AI----------PP-ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 245 ~~~d~~~--~~----------p~-~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
...|+.+ ++ +. +-+++.==+|-+++++++..+|+-+....+. +.+++.|.+.+.+
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~YEQi~~~D 232 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNYEQINPND 232 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEEeccCCCC
Confidence 5666653 10 01 2333444467788999999999999999885 8999999998654
No 373
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=85.20 E-value=2.5 Score=39.59 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=53.0
Q ss_pred cCCCeEEEecCCCC---CCC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 238 DLANLKYVGGDMFE---AIP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 238 ~~~rv~~~~~d~~~---~~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
..+||+++.+++.+ ..| .+|.++++.+.-.+++++...+++++.++++| ||+|+.-....+.
T Consensus 273 ~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p---gaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 273 RLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP---GARVLWRSAAVPP 339 (380)
T ss_pred CCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC---CCEEEEeeCCCCC
Confidence 45999999999877 343 59999999999888999999999999999999 9999987665543
No 374
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=85.08 E-value=3 Score=33.17 Aligned_cols=78 Identities=18% Similarity=0.226 Sum_probs=49.8
Q ss_pred eEEEecc-hHHHHhchh------cCCCeEEEecCCCC---CCC--CccEEEechh-h----cc-CC-hhHHHHHHHHHHH
Q 037127 222 ECTDFDL-PHVVNGLES------DLANLKYVGGDMFE---AIP--PADAVVLKWI-L----HD-WN-DEECVKILKKCKE 282 (307)
Q Consensus 222 ~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~---~~p--~~D~i~~~~v-L----h~-~~-~~~~~~~L~~~~~ 282 (307)
+++++|+ +..++..++ ..+||+++..+-.+ -.+ ..|+++++-- | |. .+ .+....-|+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 5789999 788887776 45689999876554 234 3788777642 1 11 11 2345678888889
Q ss_pred hccCCCCCcEEEEEeeecCC
Q 037127 283 AITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 283 ~L~p~~~gg~lli~e~~~~~ 302 (307)
.|+| ||.+.|+-+.-.+
T Consensus 81 lL~~---gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 81 LLKP---GGIITIVVYPGHP 97 (140)
T ss_dssp HEEE---EEEEEEEE--STC
T ss_pred hhcc---CCEEEEEEeCCCC
Confidence 9998 8999988765444
No 375
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=85.06 E-value=4 Score=37.53 Aligned_cols=94 Identities=19% Similarity=0.152 Sum_probs=62.2
Q ss_pred ccCCCeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEe--cCCCCCCCC-ccEEEechhhccC
Q 037127 194 FEGLNSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVG--GDMFEAIPP-ADAVVLKWILHDW 268 (307)
Q Consensus 194 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~--~d~~~~~p~-~D~i~~~~vLh~~ 268 (307)
..+..+|+=+|.| -|.++.++++..- .+++++|. ++-.+.|+++....-.-. .|..+...+ +|+++-.-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 4567778777766 6788889999775 89999999 666777776322222211 233333332 787766544 2
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 269 NDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 269 ~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
..+....++|++ +|+++++-...
T Consensus 240 ------~~~~~~l~~l~~---~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALRR---GGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHhc---CCEEEEECCCC
Confidence 335666777888 89999987663
No 376
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=85.06 E-value=5.8 Score=37.01 Aligned_cols=100 Identities=20% Similarity=0.199 Sum_probs=62.0
Q ss_pred ccCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEecc-hHHHHhchhc-CCC-eEEEecC-CCC---CC-C--CccEEEec
Q 037127 194 FEGLNSLVDVGGAT-GTVAKAIAKAFPNLECTDFDL-PHVVNGLESD-LAN-LKYVGGD-MFE---AI-P--PADAVVLK 262 (307)
Q Consensus 194 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~-~~r-v~~~~~d-~~~---~~-p--~~D~i~~~ 262 (307)
.....+||.+|||. |..+..+++.....++++++. ++..+.+++. ... +.+...+ +.+ .. + .+|+++-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 44567899999997 899999999986546888887 6666666642 111 1221221 111 11 1 36766543
Q ss_pred h---------------hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 263 W---------------ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 263 ~---------------vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
- +|+..++. ...++.+.+.+++ +|+++++..
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~---~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRK---GGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhcc---CCEEEEEcC
Confidence 1 22222333 3568888999998 899998853
No 377
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=84.72 E-value=1.9 Score=34.29 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecC
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLT 104 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t 104 (307)
|+.|.+|||-+.|+ ..+.+-..|.++++-|-|.+... ++.=+|+++
T Consensus 5 Ga~T~eELA~~FGv---ttRkvaStLa~~ta~Grl~Rv~q-------~gkfRy~iP 50 (155)
T PF07789_consen 5 GAKTAEELAGKFGV---TTRKVASTLAMVTATGRLIRVNQ-------NGKFRYCIP 50 (155)
T ss_pred CcccHHHHHHHhCc---chhhhHHHHHHHHhcceeEEecC-------CCceEEeCC
Confidence 89999999999999 68999999999999999999853 122357776
No 378
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=84.65 E-value=1.1 Score=37.93 Aligned_cols=38 Identities=13% Similarity=0.411 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+-+.|+.|||+.+|++ ....+.+.|+.|...|++++..
T Consensus 23 ~~~~~~~ela~~~~~~--s~~tv~~~l~~L~~~g~i~~~~ 60 (199)
T TIGR00498 23 GYPPSIREIARAVGLR--SPSAAEEHLKALERKGYIERDP 60 (199)
T ss_pred CCCCcHHHHHHHhCCC--ChHHHHHHHHHHHHCCCEecCC
Confidence 4578999999999993 1688999999999999999984
No 379
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=84.56 E-value=1.3 Score=39.40 Aligned_cols=49 Identities=12% Similarity=0.088 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
+..++++||++++- +.+...++.-|+.|..+|++++.+ +|.|..|..+-
T Consensus 136 ~~~~~~~ia~~l~p-~is~~ev~~sL~~L~~~glikk~~----------~g~y~~t~~~l 184 (271)
T TIGR02147 136 FADDPEELAKRCFP-KISAEQVKESLDLLERLGLIKKNE----------DGFYKQTDKAV 184 (271)
T ss_pred CCCCHHHHHHHhCC-CCCHHHHHHHHHHHHHCCCeeECC----------CCcEEeeccee
Confidence 45589999999992 115788999999999999999986 68999997643
No 380
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=84.56 E-value=4.1 Score=38.11 Aligned_cols=110 Identities=19% Similarity=0.254 Sum_probs=66.0
Q ss_pred HHHHHhccccccCCCeEEEecCCchH----HHHHHHHHC---CCCeEEEecchH-----HHHhchh--------cCCCeE
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGT----VAKAIAKAF---PNLECTDFDLPH-----VVNGLES--------DLANLK 243 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~----~~~~l~~~~---p~~~~~~~Dl~~-----~~~~a~~--------~~~rv~ 243 (307)
+.|++.+. -.+..+|+|+|.|.|. +...|+++. |.+++|+++.|. .++.+.+ ..=..+
T Consensus 100 qaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fe 177 (374)
T PF03514_consen 100 QAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFE 177 (374)
T ss_pred HHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEE
Confidence 55667666 4567899999999984 445566553 678999999832 2222222 223355
Q ss_pred EEec--CCCCCC--------C-CccEEEechhhccCChh------HHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 244 YVGG--DMFEAI--------P-PADAVVLKWILHDWNDE------ECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 244 ~~~~--d~~~~~--------p-~~D~i~~~~vLh~~~~~------~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
|... +-.++. + ++=+|-+..-||+..++ ....+|+.++ .|+| -.++++|.-.
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P----~vvv~~E~ea 246 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNP----KVVVLVEQEA 246 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCC----CEEEEEeecC
Confidence 5552 222211 1 35556677788887632 2345776554 7788 5777777653
No 381
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=84.51 E-value=0.94 Score=37.07 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=42.4
Q ss_pred HHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127 34 CAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (307)
Q Consensus 34 ~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (307)
...+..|+.+|..+ +..|..+||+++|+ ++..+.+=++-|...|++..-
T Consensus 13 D~~D~~IL~~Lq~d-~R~s~~eiA~~lgl---S~~tv~~Ri~rL~~~GvI~~~ 61 (164)
T PRK11169 13 DRIDRNILNELQKD-GRISNVELSKRVGL---SPTPCLERVRRLERQGFIQGY 61 (164)
T ss_pred HHHHHHHHHHhccC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence 34577888899875 89999999999999 578899999999999999854
No 382
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=84.39 E-value=6.4 Score=32.30 Aligned_cols=91 Identities=16% Similarity=0.223 Sum_probs=57.1
Q ss_pred ecCCchHHHHHHHHHCC---CCeEEEecc-hHHHHhchh--------cCCCeEE-EecCCCC---CC--C--CccEEEec
Q 037127 203 VGGATGTVAKAIAKAFP---NLECTDFDL-PHVVNGLES--------DLANLKY-VGGDMFE---AI--P--PADAVVLK 262 (307)
Q Consensus 203 vGgG~G~~~~~l~~~~p---~~~~~~~Dl-~~~~~~a~~--------~~~rv~~-~~~d~~~---~~--p--~~D~i~~~ 262 (307)
||=|.-.|+..|++.++ ++.++.+|- ..+.+.-.. ....++. +..|..+ .. . .||.|++.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 68888899999999988 445677776 333333321 1222333 3336554 12 1 49999988
Q ss_pred hhhccCC-----------hhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 263 WILHDWN-----------DEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 263 ~vLh~~~-----------~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
+.-.-.. .+-...+++.+.+.|++ +|.|.|.
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~---~G~IhVT 124 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP---DGEIHVT 124 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 7654311 12235678889999998 8888875
No 383
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=84.22 E-value=2.2 Score=36.58 Aligned_cols=44 Identities=20% Similarity=0.198 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHH
Q 037127 26 FINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRI 76 (307)
Q Consensus 26 ~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~ 76 (307)
..+..+|+.|.++|-||. + ..++..|||+.+|++ ...+...||-
T Consensus 158 drQ~~vL~~A~~~GYFd~-P---R~~~l~dLA~~lGIS---kst~~ehLRr 201 (215)
T COG3413 158 DRQLEVLRLAYKMGYFDY-P---RRVSLKDLAKELGIS---KSTLSEHLRR 201 (215)
T ss_pred HHHHHHHHHHHHcCCCCC-C---ccCCHHHHHHHhCCC---HHHHHHHHHH
Confidence 346779999999999997 4 579999999999995 4555555554
No 384
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=83.96 E-value=0.92 Score=36.66 Aligned_cols=47 Identities=9% Similarity=0.197 Sum_probs=40.9
Q ss_pred HhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127 36 VELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (307)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (307)
.+..|+++|..+ +..|..+||+.+|+ ++..+.+=++-|...|++...
T Consensus 10 ~D~~Il~~Lq~d-~R~s~~eiA~~lgl---S~~tV~~Ri~rL~~~GvI~~~ 56 (153)
T PRK11179 10 LDRGILEALMEN-ARTPYAELAKQFGV---SPGTIHVRVEKMKQAGIITGT 56 (153)
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeE
Confidence 466778888875 79999999999999 578899999999999999854
No 385
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=83.96 E-value=1.1 Score=33.87 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=49.6
Q ss_pred HhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcC
Q 037127 36 VELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKD 113 (307)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~ 113 (307)
.++.++..|... ++.+..+||+.+++ +...+.++++.|...|++.+..... +.=.-.+.+|+.|+.+...
T Consensus 23 ~q~~~L~~l~~~-~~~~~~~la~~l~i---~~~~vt~~l~~Le~~glv~r~~~~~----DrR~~~l~lT~~G~~~~~~ 92 (126)
T COG1846 23 PQYQVLLALYEA-GGITVKELAERLGL---DRSTVTRLLKRLEDKGLIERLRDPE----DRRAVLVRLTEKGRELLEQ 92 (126)
T ss_pred HHHHHHHHHHHh-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCcc----ccceeeEEECccHHHHHHH
Confidence 345555555653 34444999999999 6799999999999999999987311 0001258999999866543
No 386
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=83.92 E-value=1 Score=43.39 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=53.3
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh-cCCC
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL-KDSP 115 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~-~~~~ 115 (307)
+..|+..|...++..+..+||+.+|+ +...+.+.+..|.+.|+++..... ...|.+|+.|+..+ ..+|
T Consensus 8 e~~iL~~l~~~~~~~~~~~la~~~~~---~~~~v~~~~~~L~~kg~v~~~~~~--------~~~~~LT~eG~~~~~~G~P 76 (494)
T PTZ00326 8 ENTILSKLESENEIVNSLALAESLNI---DHQKVVGAIKSLESANYITTEMKK--------SNTWTLTEEGEDYLKNGSP 76 (494)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHcCC---CHHHHHHHHHHHHhCCCEEEEEEE--------EEEEEECHHHHHHHHcCCH
Confidence 34455556542257999999999999 679999999999999999988642 46899999999555 4454
Q ss_pred C
Q 037127 116 L 116 (307)
Q Consensus 116 ~ 116 (307)
.
T Consensus 77 E 77 (494)
T PTZ00326 77 E 77 (494)
T ss_pred H
Confidence 3
No 387
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=83.67 E-value=5.9 Score=36.60 Aligned_cols=94 Identities=21% Similarity=0.175 Sum_probs=66.5
Q ss_pred CeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c-CCCeEEEecC-CC----C-CCC-CccEEEechhhc
Q 037127 198 NSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D-LANLKYVGGD-MF----E-AIP-PADAVVLKWILH 266 (307)
Q Consensus 198 ~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~-~~rv~~~~~d-~~----~-~~p-~~D~i~~~~vLh 266 (307)
.+|+=+||| .|.++..+++.+...++++.|. +.-++.|++ . .+.+.....+ .- + .-+ ++|+++=..-
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 389999999 6788889999999899999999 777888876 3 3333333332 11 1 112 4888765544
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
....++.+.+++++ +|++.++-....+
T Consensus 248 ------~~~~~~~ai~~~r~---gG~v~~vGv~~~~ 274 (350)
T COG1063 248 ------SPPALDQALEALRP---GGTVVVVGVYGGE 274 (350)
T ss_pred ------CHHHHHHHHHHhcC---CCEEEEEeccCCc
Confidence 13468888899998 9999998776554
No 388
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=83.47 E-value=1.2 Score=37.95 Aligned_cols=37 Identities=22% Similarity=0.357 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+.+.|.+|+|+++|+ ..-..+|.|..|++.|+++.+-
T Consensus 171 ~~~~Taeela~~~gi---SRvTaRRYLeyl~~~~~l~a~i 207 (224)
T COG4565 171 DQELTAEELAQALGI---SRVTARRYLEYLVSNGILEAEI 207 (224)
T ss_pred CCccCHHHHHHHhCc---cHHHHHHHHHHHHhcCeeeEEe
Confidence 379999999999999 5678899999999999999774
No 389
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=83.39 E-value=4.7 Score=36.17 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=67.8
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC----CC-CccEEEe
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA----IP-PADAVVL 261 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~----~p-~~D~i~~ 261 (307)
.....+|||+-++.|.=+..+++..+ ..+++..|+ +.-+...++ ....+.....|..+. .+ .||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 34567899999999999999999887 568999998 544444433 456777777776652 22 3888876
Q ss_pred ch------hhc-------cCChhH-------HHHHHHHHHHhc----cCCCCCcEEEEEe
Q 037127 262 KW------ILH-------DWNDEE-------CVKILKKCKEAI----TSNSKIGKVIIID 297 (307)
Q Consensus 262 ~~------vLh-------~~~~~~-------~~~~L~~~~~~L----~p~~~gg~lli~e 297 (307)
-- ++. .+..++ -.++|+++.+.+ +| ||+++-..
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~---gG~lvYsT 219 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP---GGRLVYST 219 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE---EEEEEEEE
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC---CCeEEEEe
Confidence 22 221 112111 256899999999 98 77766443
No 390
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=83.13 E-value=1.7 Score=38.50 Aligned_cols=195 Identities=15% Similarity=0.166 Sum_probs=105.2
Q ss_pred CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcCCCCChHHHHHHhcC----
Q 037127 52 TLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLD---- 127 (307)
Q Consensus 52 t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~---- 127 (307)
++-.|+..... +.+.+..+++.|...|++..+. |...+|..|+.++..- .+...-...+.
T Consensus 36 d~wkIvd~s~~---plp~v~~i~~~l~~egiv~~~~-----------g~v~~TekG~E~~e~~--gi~~~~~~~C~~CeG 99 (354)
T COG1568 36 DFWKIVDYSDL---PLPLVASILEILEDEGIVKIEE-----------GGVELTEKGEELAEEL--GIKKKYDYTCECCEG 99 (354)
T ss_pred chHhhhhhccC---CchHHHHHHHHHHhcCcEEEec-----------CcEeehhhhHHHHHHh--CCCccccccccCcCC
Confidence 88999999988 6789999999999999999984 6699999999777532 11111111110
Q ss_pred -cchhhhhhhHHHhhhc---CCCChhhhhcCCCccccccCCcHHHHHHHHHHHhchhhhHHHHHHhccccccCCCeEEEe
Q 037127 128 -PILLSPWLKLSTWFQS---DDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDV 203 (307)
Q Consensus 128 -~~~~~~~~~l~~~l~~---~~~~~f~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDv 203 (307)
......+..|-+-++. ..|-+-+. +.+.+ -.|+ ...++. .++ +.-+.-.++.|+=+
T Consensus 100 rgi~l~~f~dll~kf~eiaK~RP~p~~~-yDQgf-----vTpE---------ttv~Rv---~lm--~~RGDL~gK~I~vv 159 (354)
T COG1568 100 RGISLQAFKDLLEKFREIAKDRPEPLHQ-YDQGF-----VTPE---------TTVSRV---ALM--YSRGDLEGKEIFVV 159 (354)
T ss_pred ccccchhHHHHHHHHHHHHhcCCCcchh-ccccc-----cccc---------ceeeee---eee--ccccCcCCCeEEEE
Confidence 0001112222221111 11111000 00000 0000 000000 011 01011235678888
Q ss_pred cCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC-----CccEEEechhhccCChhH
Q 037127 204 GGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP-----PADAVVLKWILHDWNDEE 272 (307)
Q Consensus 204 GgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p-----~~D~i~~~~vLh~~~~~~ 272 (307)
| ---.++.+++-..---++.++|+ ...+....+ ..++++....|..+|+| .||+++--=+ .+-+.
T Consensus 160 G-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp---eTi~a 235 (354)
T COG1568 160 G-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP---ETIKA 235 (354)
T ss_pred c-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch---hhHHH
Confidence 8 44455555544332348899999 445554433 56779999999999998 3897754211 01123
Q ss_pred HHHHHHHHHHhccC
Q 037127 273 CVKILKKCKEAITS 286 (307)
Q Consensus 273 ~~~~L~~~~~~L~p 286 (307)
...+|.+=..+|+.
T Consensus 236 lk~FlgRGI~tLkg 249 (354)
T COG1568 236 LKLFLGRGIATLKG 249 (354)
T ss_pred HHHHHhccHHHhcC
Confidence 45567777788875
No 391
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=82.91 E-value=6.3 Score=35.11 Aligned_cols=98 Identities=13% Similarity=0.226 Sum_probs=61.6
Q ss_pred eEEEecCCchHHHHHHHHHCCCCe-EEEecc-hHHHHhchhcCCCeEEEecCCCC----C-CCCccEEEechhhccCCh-
Q 037127 199 SLVDVGGATGTVAKAIAKAFPNLE-CTDFDL-PHVVNGLESDLANLKYVGGDMFE----A-IPPADAVVLKWILHDWND- 270 (307)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~p~~~-~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~----~-~p~~D~i~~~~vLh~~~~- 270 (307)
+++|+=||.|.+...+.+.. .+ +..+|. +..++..+..-+.. .+.+|+.+ . .+.+|+++.+-..-.|+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a 78 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA 78 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence 68999999999999998873 44 677898 56565555421111 56677766 1 346899988775543321
Q ss_pred -------hHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 271 -------EECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 271 -------~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
+....++..+.+.++.. .-+++++|.+..
T Consensus 79 g~~~~~~d~r~~L~~~~~~~i~~~--~P~~~v~ENV~g 114 (275)
T cd00315 79 GKRKGFEDTRGTLFFEIIRILKEK--KPKYFLLENVKG 114 (275)
T ss_pred hhcCCCCCchHHHHHHHHHHHHhc--CCCEEEEEcCcc
Confidence 11233555555555321 237999998864
No 392
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication. ; GO: 0006260 DNA replication, 0006276 plasmid maintenance
Probab=82.86 E-value=1.8 Score=35.55 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCC
Q 037127 16 QAHVWNHIFNFINSMSLKCAV-ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNN 94 (307)
Q Consensus 16 ~~~l~~~~~g~~~~~~L~~a~-~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~ 94 (307)
...+++++ |-..+.+|...+ .++ .+-.- -.|..+||+.+|+ +...+.|.+..|...+|+.+..
T Consensus 46 i~~~l~l~-g~k~~~Vl~~il~~~d-~~N~v----~~t~~~ia~~l~i---S~~Tv~r~ik~L~e~~iI~k~~------- 109 (165)
T PF05732_consen 46 IIKVLDLI-GNKAFRVLMYILENMD-KDNAV----VATQKEIAEKLGI---SKPTVSRAIKELEEKNIIKKIR------- 109 (165)
T ss_pred HHHHhhhh-chhHHHHHHHHHHhcC-CCCeE----EeeHHHHHHHhCC---CHHHHHHHHHHHHhCCcEEEcc-------
Confidence 33444443 223445555554 344 43222 3588999999999 5788999999999999999885
Q ss_pred CCCCCeeecChh
Q 037127 95 NDEEQGYVLTNA 106 (307)
Q Consensus 95 ~~~~~~y~~t~~ 106 (307)
.|.|.++|.
T Consensus 110 ---~G~Y~iNP~ 118 (165)
T PF05732_consen 110 ---NGAYMINPN 118 (165)
T ss_pred ---CCeEEECcH
Confidence 589999986
No 393
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=82.32 E-value=0.66 Score=34.88 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=32.8
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
|++.|..+ +.++-++||+.+|+ +..-++++|..|...|++....
T Consensus 18 Il~~L~~~-~~l~de~la~~~~l---~~~~vRkiL~~L~~~~lv~~~~ 61 (105)
T PF02002_consen 18 ILDALLRK-GELTDEDLAKKLGL---KPKEVRKILYKLYEDGLVSYRR 61 (105)
T ss_dssp HHHHHHHH---B-HHHHHHTT-S----HHHHHHHHHHHHHHSS-EEEE
T ss_pred HHHHHHHc-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeEEEE
Confidence 56667654 68999999999999 6899999999999999997664
No 394
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=82.22 E-value=2.1 Score=32.95 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
.++|++|||+.+.+ .++.++.+|+.|...|.++-.+
T Consensus 18 ~~vtl~elA~~l~c---S~Rn~r~lLkkm~~~gWi~W~p 53 (115)
T PF12793_consen 18 VEVTLDELAELLFC---SRRNARTLLKKMQEEGWITWQP 53 (115)
T ss_pred cceeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeeeC
Confidence 57899999999999 6899999999999999999986
No 395
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=82.11 E-value=2.5 Score=37.80 Aligned_cols=65 Identities=14% Similarity=0.121 Sum_probs=51.6
Q ss_pred hHHHHhchhcCCCeEEEecCCCC-----CCCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 229 PHVVNGLESDLANLKYVGGDMFE-----AIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 229 ~~~~~~a~~~~~rv~~~~~d~~~-----~~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
+.+-+.+++...||.++.+|+.+ |...+|.|++..+-.-+++.+...++.++.+-+.+ |.++++-
T Consensus 296 ~~~YEsir~n~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~---gA~VifR 365 (414)
T COG5379 296 EGVYESIRQNLRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEA---GARVIFR 365 (414)
T ss_pred hhhHHHHHhhhhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCC---CcEEEEe
Confidence 34444444467899999999976 33369999999999888999999999999999998 7777653
No 396
>PF13730 HTH_36: Helix-turn-helix domain
Probab=81.94 E-value=1.6 Score=28.31 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=27.0
Q ss_pred CHHHHHHHcCCCCCCcccHHHHHHHHHhCCce
Q 037127 52 TLNDLVSALTINPSKTRCVYRLMRILIHSGFF 83 (307)
Q Consensus 52 t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l 83 (307)
|.+.||+.+|+ ..+.+.+.+..|...|++
T Consensus 27 S~~~la~~~g~---s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGV---SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCc---CHHHHHHHHHHHHHCcCC
Confidence 89999999999 679999999999999985
No 397
>COG4519 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.88 E-value=2.4 Score=29.96 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127 48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS 107 (307)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s 107 (307)
+...++.+|-+++|+ +.+.++.++.+|-.+|+...-...+.|+| .|.|.+..-|
T Consensus 20 ~e~~nVP~lm~~TGw---PRRT~QDvikAlpglgi~l~FvQ~G~Rnn---~GyYql~dWG 73 (95)
T COG4519 20 GETANVPELMAATGW---PRRTAQDVIKALPGLGIVLEFVQEGARNN---QGYYQLRDWG 73 (95)
T ss_pred cccCChHHHHHHcCC---chhHHHHHHHhCcCCCeEEEeeecccccC---CCceEeeecc
Confidence 357899999999999 67899999999999999876654444444 6777776543
No 398
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=81.74 E-value=2.7 Score=36.57 Aligned_cols=75 Identities=19% Similarity=0.288 Sum_probs=44.6
Q ss_pred HHHHHhccccccCC--CeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhc-hh--------------cCCCeEEEe
Q 037127 184 RVVIHKCKNVFEGL--NSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGL-ES--------------DLANLKYVG 246 (307)
Q Consensus 184 ~~~~~~~~~~~~~~--~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a-~~--------------~~~rv~~~~ 246 (307)
+.+++++. +.+. .+|||.-+|-|.-+.-++.. +.++++++..+++... +. ...|++++.
T Consensus 63 ~~l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 63 DPLAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp SHHHHHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred cHHHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 34556554 3333 48999999999999988865 6789999995554432 21 135899999
Q ss_pred cCCCC--CCC--CccEEEec
Q 037127 247 GDMFE--AIP--PADAVVLK 262 (307)
Q Consensus 247 ~d~~~--~~p--~~D~i~~~ 262 (307)
+|..+ ..+ .+|+|.+-
T Consensus 139 ~d~~~~L~~~~~s~DVVY~D 158 (234)
T PF04445_consen 139 GDALEYLRQPDNSFDVVYFD 158 (234)
T ss_dssp S-CCCHCCCHSS--SEEEE-
T ss_pred CCHHHHHhhcCCCCCEEEEC
Confidence 99887 232 58998764
No 399
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=81.62 E-value=2.4 Score=32.79 Aligned_cols=78 Identities=18% Similarity=0.214 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcC-CCCCCcccHHHHHHHHHhCCceeeeccCCCCCC
Q 037127 16 QAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALT-INPSKTRCVYRLMRILIHSGFFAQQTLNSSRNN 94 (307)
Q Consensus 16 ~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g-~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~ 94 (307)
....++++.+-|..-+|+.. .. |+.-+.||-+.++ + .+.-|.+-|+.|...|++.+..-. .
T Consensus 13 ~~~~l~~ig~kW~~lIl~~L---------~~--g~~RF~eL~r~i~~I---s~k~Ls~~Lk~Le~~Glv~R~~~~----~ 74 (120)
T COG1733 13 VEEALEVIGGKWTLLILRDL---------FD--GPKRFNELRRSIGGI---SPKMLSRRLKELEEDGLVERVVYP----E 74 (120)
T ss_pred HHHHHHHHcCccHHHHHHHH---------hc--CCCcHHHHHHHcccc---CHHHHHHHHHHHHHCCCEEeeecC----C
Confidence 44556666666666665554 22 6899999999998 8 679999999999999999998631 0
Q ss_pred CCCCCeeecChhcchhh
Q 037127 95 NDEEQGYVLTNASKLLL 111 (307)
Q Consensus 95 ~~~~~~y~~t~~s~~l~ 111 (307)
..-.-.|++|+.|+.|.
T Consensus 75 ~PprveY~LT~~G~~L~ 91 (120)
T COG1733 75 EPPRVEYRLTEKGRDLL 91 (120)
T ss_pred CCceeEEEEhhhHHHHH
Confidence 11123699999988665
No 400
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=81.51 E-value=1.4 Score=36.10 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
.+|+|++||++++|+ ....++.-++-|...+++.+.-
T Consensus 39 ~~Pmtl~Ei~E~lg~---Sks~vS~~lkkL~~~~lV~~~~ 75 (177)
T COG1510 39 RKPLTLDEIAEALGM---SKSNVSMGLKKLQDWNLVKKVF 75 (177)
T ss_pred CCCccHHHHHHHHCC---CcchHHHHHHHHHhcchHHhhh
Confidence 489999999999999 5789999999999999999874
No 401
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=81.51 E-value=11 Score=34.60 Aligned_cols=106 Identities=20% Similarity=0.299 Sum_probs=59.9
Q ss_pred ccCCCeEEEecCCchHHHHHHH--------HHC--------CCCeEEEecchH-----HHHhchh------cCCC--eEE
Q 037127 194 FEGLNSLVDVGGATGTVAKAIA--------KAF--------PNLECTDFDLPH-----VVNGLES------DLAN--LKY 244 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~--------~~~--------p~~~~~~~Dl~~-----~~~~a~~------~~~r--v~~ 244 (307)
..+.-+|+|+||.+|.-+..+. +++ |.++++.=|+|. +...... .... +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 4567899999999998775442 222 346788889852 2222221 1123 355
Q ss_pred EecCCCCC-CC--CccEEEechhhccCC-------h------------------------------hHHHHHHHHHHHhc
Q 037127 245 VGGDMFEA-IP--PADAVVLKWILHDWN-------D------------------------------EECVKILKKCKEAI 284 (307)
Q Consensus 245 ~~~d~~~~-~p--~~D~i~~~~vLh~~~-------~------------------------------~~~~~~L~~~~~~L 284 (307)
++|.|+.. +| ..|+++.+..||-.+ + ++-..+|+.=++=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 67899883 56 489999999988332 1 12233555445567
Q ss_pred cCCCCCcEEEEEeeecCC
Q 037127 285 TSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 285 ~p~~~gg~lli~e~~~~~ 302 (307)
+| ||++++.=..+++
T Consensus 174 v~---GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VP---GGRMVLTFLGRDE 188 (334)
T ss_dssp EE---EEEEEEEEEE-ST
T ss_pred cc---CcEEEEEEeeccc
Confidence 77 8999988777776
No 402
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=81.43 E-value=1.7 Score=41.37 Aligned_cols=102 Identities=16% Similarity=0.021 Sum_probs=60.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCC--eEEEecc-hHHHHhchh-cCC-----CeEEEe---cCCCCCCC---CccEEE
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNL--ECTDFDL-PHVVNGLES-DLA-----NLKYVG---GDMFEAIP---PADAVV 260 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~--~~~~~Dl-~~~~~~a~~-~~~-----rv~~~~---~d~~~~~p---~~D~i~ 260 (307)
.+..+.|+|.|.|.-.-.+....++. .+..+|. -.+...... ..+ ++.... .+-+-|.+ +||+++
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 35678889988775555555555553 4677887 445444433 111 111111 12222333 499999
Q ss_pred echhhccCChhH-HHHHHHHHHHh-ccCCCCCcEEEEEeeec
Q 037127 261 LKWILHDWNDEE-CVKILKKCKEA-ITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 261 ~~~vLh~~~~~~-~~~~L~~~~~~-L~p~~~gg~lli~e~~~ 300 (307)
++++||.+.... .....++..+. ..+ |+.++|+|.--
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~---g~~lViIe~g~ 318 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRS---GYFLVIIEKGT 318 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCC---CceEEEEecCC
Confidence 999999987653 23344555444 455 88999998643
No 403
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=81.31 E-value=3.8 Score=36.23 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=31.2
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHC-----CCCeEEEecch
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAF-----PNLECTDFDLP 229 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-----p~~~~~~~Dl~ 229 (307)
+.+...++++|||.|.++..+++.. +...++.+|..
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 4566799999999999999999988 56789999983
No 404
>PF09821 AAA_assoc_C: C-terminal AAA-associated domain; InterPro: IPR018632 Members of this family are found in various prokaryotic ABC transporters, predominantly involved in nitrate, sulphonate and bicarbonate translocation.
Probab=81.15 E-value=3.3 Score=32.07 Aligned_cols=75 Identities=11% Similarity=0.072 Sum_probs=52.2
Q ss_pred HHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcCCCCChHHHHHHhcCcchhhhh
Q 037127 55 DLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPILLSPW 134 (307)
Q Consensus 55 eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~ 134 (307)
.||+.+++ +-+-|-.+++++.-+||++.. +|-..+|+.|+.++..+......++.-... ...+..
T Consensus 2 ~La~~l~~---eiDdL~p~~eAaelLgf~~~~-----------~Gdi~LT~~G~~f~~a~~~~rK~if~~~l~-~~~Pl~ 66 (120)
T PF09821_consen 2 QLADELHL---EIDDLLPIVEAAELLGFAEVE-----------EGDIRLTPLGRRFAEADIDERKEIFREQLL-RHVPLA 66 (120)
T ss_pred chHHHhCC---cHHHHHHHHHHHHHcCCeeec-----------CCcEEeccchHHHHHCChHHHHHHHHHHHH-hcCCHH
Confidence 57888998 678899999999999999998 589999999998886553333333222111 112334
Q ss_pred hhHHHhhhcC
Q 037127 135 LKLSTWFQSD 144 (307)
Q Consensus 135 ~~l~~~l~~~ 144 (307)
..+...+++.
T Consensus 67 ~~I~~~L~~~ 76 (120)
T PF09821_consen 67 AHIRRVLRER 76 (120)
T ss_pred HHHHHHHHhC
Confidence 5566677654
No 405
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=81.15 E-value=1.2 Score=31.33 Aligned_cols=46 Identities=22% Similarity=0.366 Sum_probs=37.5
Q ss_pred CcccccccCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 39 SIPDIINKHG-KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 39 glfd~L~~~~-~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
.+++.|.... .+++..+|+..+|. |++.+...++.|...|++.+..
T Consensus 6 ~~Le~I~rsR~~Gi~q~~L~~~~~~---D~r~i~~~~k~L~~~gLI~k~~ 52 (75)
T PF04182_consen 6 CLLERIARSRYNGITQSDLSKLLGI---DPRSIFYRLKKLEKKGLIVKQS 52 (75)
T ss_pred HHHHHHHhcCCCCEehhHHHHHhCC---CchHHHHHHHHHHHCCCEEEEE
Confidence 3444444321 57899999999999 7899999999999999999986
No 406
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.63 E-value=13 Score=33.83 Aligned_cols=96 Identities=15% Similarity=0.086 Sum_probs=66.0
Q ss_pred ccCCCeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC--C--------CC--CccEE
Q 037127 194 FEGLNSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE--A--------IP--PADAV 259 (307)
Q Consensus 194 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~--~--------~p--~~D~i 259 (307)
.....+||=+|+| .|..+...++.+...++++.|+ +.-++.|++....+......... . .. .+|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 5567899999999 6888888899999999999999 78888888733222222211111 0 11 16666
Q ss_pred EechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 260 VLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 260 ~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
+-...++ .-++.+..++++ ||.++++...-
T Consensus 247 ~dCsG~~--------~~~~aai~a~r~---gGt~vlvg~g~ 276 (354)
T KOG0024|consen 247 FDCSGAE--------VTIRAAIKATRS---GGTVVLVGMGA 276 (354)
T ss_pred EEccCch--------HHHHHHHHHhcc---CCEEEEeccCC
Confidence 6555554 556777888998 89988887543
No 407
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=80.28 E-value=1.5 Score=35.15 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=41.0
Q ss_pred HhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 36 VELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
.+..++..|..+ ++.|..+||+++|+ ++..+.+-++-|...|++....
T Consensus 9 ~D~~IL~~L~~d-~r~~~~eia~~lgl---S~~~v~~Ri~~L~~~GiI~~~~ 56 (154)
T COG1522 9 IDRRILRLLQED-ARISNAELAERVGL---SPSTVLRRIKRLEEEGVIKGYT 56 (154)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCceeeEE
Confidence 455677778775 78999999999999 5788999999999999999874
No 408
>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function.
Probab=79.85 E-value=4.6 Score=30.97 Aligned_cols=59 Identities=27% Similarity=0.469 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChh
Q 037127 27 INSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNA 106 (307)
Q Consensus 27 ~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~ 106 (307)
+.-.||.+|. +|..+ ||.+..+|++.++++ .+ .++|+. --.|.|++.+ .|.|.+|+.
T Consensus 57 YRQ~Al~~A~------~L~~~-Gp~~~~~l~~~~~~~----~A-~~IL~~-N~YGWFeRv~----------rGvY~LT~~ 113 (118)
T PF09929_consen 57 YRQDALRCAA------ALAEH-GPSRPADLRKATGVP----KA-TSILRD-NHYGWFERVE----------RGVYALTPA 113 (118)
T ss_pred hHHHHHHHHH------HHHHc-CCCCHHHHHHhcCCC----hH-HHHHHh-Ccccceeeec----------cceEecCcc
Confidence 3455666663 45544 799999999999983 23 344432 4579999997 699999999
Q ss_pred cc
Q 037127 107 SK 108 (307)
Q Consensus 107 s~ 108 (307)
|+
T Consensus 114 G~ 115 (118)
T PF09929_consen 114 GR 115 (118)
T ss_pred hh
Confidence 87
No 409
>PRK05638 threonine synthase; Validated
Probab=79.64 E-value=1.9 Score=41.35 Aligned_cols=54 Identities=22% Similarity=0.288 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHcC--CCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 49 KPTTLNDLVSALT--INPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 49 ~~~t~~eLA~~~g--~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.+.-||++.++ + ....+++.|+.|...|+++..... +-.-.|++|+.++.+.
T Consensus 383 ~~~~~~el~~~l~~~~---s~~~v~~hL~~Le~~GLV~~~~~~------g~~~~Y~Lt~~g~~~l 438 (442)
T PRK05638 383 REMYGYEIWKALGKPL---KYQAVYQHIKELEELGLIEEAYRK------GRRVYYKLTEKGRRLL 438 (442)
T ss_pred CCccHHHHHHHHcccC---CcchHHHHHHHHHHCCCEEEeecC------CCcEEEEECcHHHHHH
Confidence 5889999999998 6 578999999999999999864210 1123599999988544
No 410
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=79.57 E-value=2 Score=29.85 Aligned_cols=38 Identities=24% Similarity=0.544 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHc---CCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 49 KPTTLNDLVSAL---TINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 49 ~~~t~~eLA~~~---g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+..++.++|+.+ +... ..+++..++.+|.++|++++..
T Consensus 23 ~~i~l~~ia~~l~~~~~k~-~~RRlYDI~NVLealgli~K~~ 63 (71)
T PF02319_consen 23 KSISLNEIADKLISENVKT-QRRRLYDIINVLEALGLIEKQS 63 (71)
T ss_dssp TEEEHHHHHHHCHHHCCHH-HCHHHHHHHHHHHHCTSEEEEE
T ss_pred CcccHHHHHHHHccccccc-ccchhhHHHHHHHHhCceeecC
Confidence 789999999999 7611 3599999999999999999965
No 411
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=78.86 E-value=2.9 Score=28.25 Aligned_cols=47 Identities=13% Similarity=0.178 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
.+++.+++.++.|.+ -.......+..+...|+++.+ ++++++|+.|.
T Consensus 19 ~Gi~~~~~~~~~g~~--~~~~~~~~l~~l~~~Gll~~~-----------~~~l~lT~~G~ 65 (66)
T PF06969_consen 19 EGIDLSEFEQRFGID--FAEEFQKELEELQEDGLLEID-----------GGRLRLTEKGR 65 (66)
T ss_dssp SEEEHHHHHHHTT----THHH-HHHHHHHHHTTSEEE------------SSEEEE-TTTG
T ss_pred CCcCHHHHHHHHCcC--HHHHHHHHHHHHHHCCCEEEe-----------CCEEEECcccC
Confidence 468999999999984 244557889999999999998 58999999875
No 412
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=78.71 E-value=2.3 Score=32.60 Aligned_cols=37 Identities=16% Similarity=0.301 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecc
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTL 88 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~ 88 (307)
.+.|+.|||..+++ +...++-++.-|...|++....+
T Consensus 54 ~~~SVAEiAA~L~l---PlgVvrVLvsDL~~~G~v~v~~p 90 (114)
T PF05331_consen 54 RPLSVAEIAARLGL---PLGVVRVLVSDLADAGLVRVRAP 90 (114)
T ss_pred CCccHHHHHHhhCC---CchhhhhhHHHHHhCCCEEEeCC
Confidence 59999999999999 67899999999999999998763
No 413
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=78.61 E-value=2.4 Score=37.25 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=39.0
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
.|.+.|.+. +.+++.|||+.+|+ .+.-++|-|+.|...|++.+..
T Consensus 9 ~Il~~l~~~-~~~~~~ela~~l~v---S~~TirRdL~~Le~~g~i~r~~ 53 (251)
T PRK13509 9 ILLELLAQL-GFVTVEKVIERLGI---SPATARRDINKLDESGKLKKVR 53 (251)
T ss_pred HHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 356677764 79999999999999 5788999999999999999874
No 414
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=78.55 E-value=4.3 Score=35.11 Aligned_cols=94 Identities=23% Similarity=0.367 Sum_probs=64.8
Q ss_pred cccCCCeEEEecCCchHHHHHHHHHCCC-C--------eEEEecchHHHHhchhcCCCeEEEecCCCCC---------CC
Q 037127 193 VFEGLNSLVDVGGATGTVAKAIAKAFPN-L--------ECTDFDLPHVVNGLESDLANLKYVGGDMFEA---------IP 254 (307)
Q Consensus 193 ~~~~~~~vlDvGgG~G~~~~~l~~~~p~-~--------~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~---------~p 254 (307)
.+.+.+++||+=.-.|.++..|.++.-. + .++.+|+-.|. ..+.|.-+++|+.++ +.
T Consensus 38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----PI~GV~qlq~DIT~~stae~Ii~hfg 112 (294)
T KOG1099|consen 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----PIEGVIQLQGDITSASTAEAIIEHFG 112 (294)
T ss_pred HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----ccCceEEeecccCCHhHHHHHHHHhC
Confidence 3567789999999999999988765321 1 27888985553 456788889999873 22
Q ss_pred --CccEEEech-----hhccCChh-HHHH---HHHHHHHhccCCCCCcEEE
Q 037127 255 --PADAVVLKW-----ILHDWNDE-ECVK---ILKKCKEAITSNSKIGKVI 294 (307)
Q Consensus 255 --~~D~i~~~~-----vLh~~~~~-~~~~---~L~~~~~~L~p~~~gg~ll 294 (307)
.+|+|++-. -||++++= +..- .|.-...+|+| ||.++
T Consensus 113 gekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~---Gg~FV 160 (294)
T KOG1099|consen 113 GEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKP---GGSFV 160 (294)
T ss_pred CCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecC---CCeee
Confidence 389999976 47877653 2222 23334467788 88765
No 415
>PRK00215 LexA repressor; Validated
Probab=78.23 E-value=3.4 Score=35.00 Aligned_cols=38 Identities=21% Similarity=0.437 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+.+.|+.|||+.+|+. +...+.++|..|...|++++..
T Consensus 21 ~~~~s~~ela~~~~~~--~~~tv~~~l~~L~~~g~i~~~~ 58 (205)
T PRK00215 21 GYPPSRREIADALGLR--SPSAVHEHLKALERKGFIRRDP 58 (205)
T ss_pred CCCCCHHHHHHHhCCC--ChHHHHHHHHHHHHCCCEEeCC
Confidence 4678999999999992 2578999999999999999885
No 416
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=77.48 E-value=4 Score=33.84 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=33.4
Q ss_pred CccEEEechhhccCCh----------hHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 255 PADAVVLKWILHDWND----------EECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 255 ~~D~i~~~~vLh~~~~----------~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
..|+|++++.|||++- +...++++++.++|++ +..+|+-+..|-
T Consensus 50 ~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~----~allIW~tt~Pv 103 (183)
T cd01842 50 RLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPI----ECLIVWNTAMPV 103 (183)
T ss_pred ceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCC----ccEEEEecCCCC
Confidence 3699999999998764 2356788888888887 577777777663
No 417
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=77.40 E-value=1.8 Score=32.30 Aligned_cols=35 Identities=11% Similarity=0.262 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (307)
.++++.+|++++++ +...++..|+.|...|++-..
T Consensus 64 ~Gv~v~~I~~~l~~---~~~~v~~al~~L~~eG~IYsT 98 (102)
T PF08784_consen 64 EGVHVDEIAQQLGM---SENEVRKALDFLSNEGHIYST 98 (102)
T ss_dssp TTEEHHHHHHHSTS----HHHHHHHHHHHHHTTSEEES
T ss_pred CcccHHHHHHHhCc---CHHHHHHHHHHHHhCCeEecc
Confidence 57999999999999 689999999999999998754
No 418
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=77.05 E-value=2.4 Score=40.51 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=41.1
Q ss_pred ccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127 41 PDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS 107 (307)
Q Consensus 41 fd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s 107 (307)
...|.. ||.|+.|||+.+|+ +...+.+.|..| .|++...+.+ -..+|+++...
T Consensus 6 ~~~L~~--g~~~~~eL~~~l~~---sq~~~s~~L~~L--~~~V~~~~~g-------r~~~Y~l~~~~ 58 (442)
T PRK09775 6 TTLLLQ--GPLSAAELAARLGV---SQATLSRLLAAL--GDQVVRFGKA-------RATRYALLRPL 58 (442)
T ss_pred HHHHhc--CCCCHHHHHHHhCC---CHHHHHHHHHHh--hcceeEeccC-------ceEEEEecccc
Confidence 345554 89999999999999 689999999999 8998887642 13467777643
No 419
>PF13814 Replic_Relax: Replication-relaxation
Probab=76.53 E-value=5.4 Score=33.09 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=48.7
Q ss_pred cccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127 44 INKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK 112 (307)
Q Consensus 44 L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~ 112 (307)
|... ..+|...|+..+..+...++.+.+.|..|...|++..........++.....|.+|+.|..++.
T Consensus 4 L~~~-r~lt~~Qi~~l~~~~~~~~~~~~rrL~~L~~~glv~~~~~~~~~~~g~~~~vy~Lt~~G~~~l~ 71 (191)
T PF13814_consen 4 LARH-RFLTTDQIARLLFPSSKSERTARRRLKRLRELGLVDRFRRRVGARGGSQPYVYYLTPAGARLLA 71 (191)
T ss_pred HHHh-cCcCHHHHHHHHcCCCcchHHHHHHHHHHhhCCcEEeecccccccCCCcceEEEECHHHHHHHH
Confidence 4444 6899999999999853223479999999999999998864210011223457999999986554
No 420
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=75.86 E-value=2.2 Score=37.55 Aligned_cols=45 Identities=11% Similarity=0.248 Sum_probs=38.9
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
.|.+.|.+. +.+++.|||+.+++ ++.-++|-|..|...|++.+.-
T Consensus 9 ~Il~~l~~~-~~~~~~ela~~l~v---S~~TiRRdL~~Le~~g~l~r~~ 53 (252)
T PRK10906 9 AIIELVKQQ-GYVSTEELVEHFSV---SPQTIRRDLNDLAEQNKILRHH 53 (252)
T ss_pred HHHHHHHHc-CCEeHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 455667664 78999999999999 6789999999999999999874
No 421
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=75.65 E-value=2.2 Score=28.78 Aligned_cols=41 Identities=15% Similarity=0.266 Sum_probs=32.3
Q ss_pred cccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127 42 DIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (307)
Q Consensus 42 d~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (307)
+.|-.. |..|+.+|++.+++ +.+.++.-|-.|...+++...
T Consensus 20 ~~Ll~~-G~ltl~~i~~~t~l---~~~~Vk~~L~~LiQh~~v~y~ 60 (62)
T PF08221_consen 20 EVLLSR-GRLTLREIVRRTGL---SPKQVKKALVVLIQHNLVQYF 60 (62)
T ss_dssp HHHHHC--SEEHHHHHHHHT-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHc-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHcCCeeee
Confidence 334433 78999999999999 679999999999999999865
No 422
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=75.52 E-value=5.7 Score=27.58 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=36.2
Q ss_pred cccCCCCCCHHHHHH---HcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127 44 INKHGKPTTLNDLVS---ALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS 107 (307)
Q Consensus 44 L~~~~~~~t~~eLA~---~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s 107 (307)
+...|+++++.+|.+ ..|+ ++..++.-|.-|...|+|+.... +....|++|+.+
T Consensus 14 ~~~~g~~i~~~~Li~ll~~~Gv---~e~avR~alsRl~~~G~L~~~r~-------Gr~~~Y~Lt~~g 70 (70)
T PF07848_consen 14 LRPRGGWIWVASLIRLLAAFGV---SESAVRTALSRLVRRGWLESERR-------GRRSYYRLTERG 70 (70)
T ss_dssp CCTTTS-EEHHHHHHHHCCTT-----HHHHHHHHHHHHHTTSEEEECC-------CTEEEEEE-HHH
T ss_pred hccCCCceeHHHHHHHHHHcCC---ChHHHHHHHHHHHHcCceeeeec-------CccceEeeCCCC
Confidence 333456767666555 4666 78999999999999999999973 113369999753
No 423
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=75.50 E-value=4.2 Score=33.81 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=31.9
Q ss_pred CCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 50 PTTLNDLVSAL-TINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 50 ~~t~~eLA~~~-g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
..|-..||+.+ |+ +++.++|.+..|+..|++....
T Consensus 70 fpSN~~La~r~~G~---s~~tlrR~l~~LveaGLI~rrD 105 (177)
T PF03428_consen 70 FPSNAQLAERLNGM---SERTLRRHLARLVEAGLIVRRD 105 (177)
T ss_pred ecCHHHHHHHHcCC---CHHHHHHHHHHHHHCCCeeecc
Confidence 45789999999 99 6899999999999999999975
No 424
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=75.41 E-value=4.3 Score=34.11 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=32.5
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 50 PTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 50 ~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+.|-++||+.+|+ ....+.|+|..|...|++....
T Consensus 168 ~~t~~~lA~~lG~---tr~tvsR~l~~l~~~gii~~~~ 202 (211)
T PRK11753 168 KITRQEIGRIVGC---SREMVGRVLKMLEDQGLISAHG 202 (211)
T ss_pred CCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 7899999999999 6799999999999999999874
No 425
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=75.35 E-value=10 Score=29.59 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=43.8
Q ss_pred CCCeEEEecCCch-HHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEecCCCCCCC----CccEEEechhhccCCh
Q 037127 196 GLNSLVDVGGATG-TVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIP----PADAVVLKWILHDWND 270 (307)
Q Consensus 196 ~~~~vlDvGgG~G-~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~~p----~~D~i~~~~vLh~~~~ 270 (307)
...++++||=|.= ..+..|.+. +..+++.|..+. . ....+.++.-|+++|-. ++|+|..-+. .
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~----~-a~~g~~~v~DDif~P~l~iY~~a~lIYSiRP-----P 80 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR----K-APEGVNFVVDDIFNPNLEIYEGADLIYSIRP-----P 80 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES-------
T ss_pred CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc----c-cccCcceeeecccCCCHHHhcCCcEEEEeCC-----C
Confidence 3559999999965 445555555 488999998332 1 23678999999999643 5898887663 3
Q ss_pred hHHHHHHHHHHHhcc
Q 037127 271 EECVKILKKCKEAIT 285 (307)
Q Consensus 271 ~~~~~~L~~~~~~L~ 285 (307)
.|.+.-|.++++.+.
T Consensus 81 ~El~~~il~lA~~v~ 95 (127)
T PF03686_consen 81 PELQPPILELAKKVG 95 (127)
T ss_dssp TTSHHHHHHHHHHHT
T ss_pred hHHhHHHHHHHHHhC
Confidence 444566667777664
No 426
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.29 E-value=9.6 Score=34.70 Aligned_cols=95 Identities=13% Similarity=0.217 Sum_probs=58.6
Q ss_pred EEEecCCchHHHHHHHHHCCCCeE-EEecc-hHHHHhchh-cCCCeEEEecCCCC----CCCCccEEEechhhccCC---
Q 037127 200 LVDVGGATGTVAKAIAKAFPNLEC-TDFDL-PHVVNGLES-DLANLKYVGGDMFE----AIPPADAVVLKWILHDWN--- 269 (307)
Q Consensus 200 vlDvGgG~G~~~~~l~~~~p~~~~-~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~----~~p~~D~i~~~~vLh~~~--- 269 (307)
|+|+=||.|.+...+.+. +.++ ..+|. +..++..+. ..+ .+..+|+.+ ..|.+|+++..-..-.|+
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~--~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag 76 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN--KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAG 76 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC--CCCccChhhhhhhhCCCcCEEEecCCCcccchhc
Confidence 589999999999999876 4554 56888 444444443 222 445677766 255689887776554443
Q ss_pred -----hhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 270 -----DEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 270 -----~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
++....++....+.++.. .-+++++|.|.
T Consensus 77 ~~~~~~d~r~~L~~~~~r~i~~~--~P~~~v~ENV~ 110 (315)
T TIGR00675 77 KRKGFEDTRGTLFFEIVRILKEK--KPKFFLLENVK 110 (315)
T ss_pred ccCCCCCchhhHHHHHHHHHhhc--CCCEEEeeccH
Confidence 112224555555555321 23789999875
No 427
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=75.11 E-value=4.1 Score=28.40 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=36.0
Q ss_pred ccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 41 PDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 41 fd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
...+.. +..|.+||-+.+|+ +..-+...|.-|+..|++.+..
T Consensus 11 L~~ls~--~c~TLeeL~ekTgi---~k~~LlV~LsrL~k~GiI~Rkw 52 (72)
T PF05584_consen 11 LIILSK--RCCTLEELEEKTGI---SKNTLLVYLSRLAKRGIIERKW 52 (72)
T ss_pred HHHHHh--ccCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeeee
Confidence 344554 58999999999999 6788999999999999999884
No 428
>PHA01634 hypothetical protein
Probab=75.01 E-value=14 Score=29.00 Aligned_cols=84 Identities=15% Similarity=0.189 Sum_probs=51.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCCCccEEEec------
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPPADAVVLK------ 262 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~~D~i~~~------ 262 (307)
..++|+|||++.|..++.++-+. .-+++.++. |...+..++ ..+...- .++.....+++|+..+-
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~-~~eW~~~Y~~~Di~~iDCeGCE~ 105 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVM-KGEWNGEYEDVDIFVMDCEGCEE 105 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHHhhhheeeeceee-cccccccCCCcceEEEEccchHH
Confidence 46799999999999999998774 236888887 555555554 1111111 11222234445655432
Q ss_pred --------------hhhccCChhHHHHHHHHHHH
Q 037127 263 --------------WILHDWNDEECVKILKKCKE 282 (307)
Q Consensus 263 --------------~vLh~~~~~~~~~~L~~~~~ 282 (307)
-.+|+|+... +.+++++..
T Consensus 106 ~l~v~~l~ky~q~ci~ihdwt~nr-vel~rk~~g 138 (156)
T PHA01634 106 KLNVSMLKKYKQWCIGIHDWTKNR-VELMRKMEG 138 (156)
T ss_pred hcCHHHHHHHHhheeeeehhhhhH-HHHHHHhcC
Confidence 1469999874 688888743
No 429
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=74.96 E-value=4 Score=35.05 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
-|+|.++||+.+|+ ....+.|+|..|...|++....
T Consensus 183 ~~lt~~~iA~~lG~---sr~tvsR~l~~l~~~g~I~~~~ 218 (235)
T PRK11161 183 LTMTRGDIGNYLGL---TVETISRLLGRFQKSGMLAVKG 218 (235)
T ss_pred ccccHHHHHHHhCC---cHHHHHHHHHHHHHCCCEEecC
Confidence 37899999999999 5789999999999999999884
No 430
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=74.53 E-value=15 Score=32.92 Aligned_cols=82 Identities=17% Similarity=0.073 Sum_probs=52.4
Q ss_pred CeEEEecCC--chHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEe-cCC-CCCCCCccEEEechhhccCChhH
Q 037127 198 NSLVDVGGA--TGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVG-GDM-FEAIPPADAVVLKWILHDWNDEE 272 (307)
Q Consensus 198 ~~vlDvGgG--~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~-~d~-~~~~p~~D~i~~~~vLh~~~~~~ 272 (307)
.+|+=+|.| -|.++..+.+.....++++.|. ...++.+.. -.+.... .+. ......+|+|+++-.+. .
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~--lgv~d~~~~~~~~~~~~~aD~VivavPi~-----~ 76 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE--LGVIDELTVAGLAEAAAEADLVIVAVPIE-----A 76 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh--cCcccccccchhhhhcccCCEEEEeccHH-----H
Confidence 356667776 4567777777777777899998 455555552 1111111 222 22344689999886554 4
Q ss_pred HHHHHHHHHHhccC
Q 037127 273 CVKILKKCKEAITS 286 (307)
Q Consensus 273 ~~~~L~~~~~~L~p 286 (307)
...+|+++...+++
T Consensus 77 ~~~~l~~l~~~l~~ 90 (279)
T COG0287 77 TEEVLKELAPHLKK 90 (279)
T ss_pred HHHHHHHhcccCCC
Confidence 56888999888887
No 431
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=74.18 E-value=7.7 Score=32.41 Aligned_cols=100 Identities=18% Similarity=0.170 Sum_probs=53.5
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------------------cCCCeEEEecCCCCCCCCccEE
Q 037127 199 SLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------------------DLANLKYVGGDMFEAIPPADAV 259 (307)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------------------~~~rv~~~~~d~~~~~p~~D~i 259 (307)
+|.=+|.|.=....+++-...+.+++++|. +..++...+ ...|+.+. -|+.+....+|++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai~~adv~ 80 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAIKDADVV 80 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHHHH-SEE
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhhhccceE
Confidence 456678885444433333333689999999 676776654 02333332 1111112347887
Q ss_pred EechhhccCCh-----hHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 260 VLKWILHDWND-----EECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 260 ~~~~vLh~~~~-----~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
++.---..-.+ .-....++.+.+.+++ +.++|++...+..
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~----~~lvV~~STvppG 125 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRP----GDLVVIESTVPPG 125 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCS----CEEEEESSSSSTT
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhh----cceEEEccEEEEe
Confidence 76653322111 2356778888888986 8888888877753
No 432
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=73.89 E-value=7.1 Score=36.34 Aligned_cols=37 Identities=22% Similarity=0.540 Sum_probs=31.0
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHH
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHV 231 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~ 231 (307)
+.+...++|+|.|.|+++.-+.-.| ++.+.++|-...
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~ 187 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQR 187 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchH
Confidence 5567899999999999999888776 689999998543
No 433
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=73.63 E-value=4.7 Score=33.31 Aligned_cols=36 Identities=11% Similarity=0.105 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
-|.|-++||+.+|+ ....+.|.|..|...|+++...
T Consensus 142 ~~~t~~~iA~~lG~---tretvsR~l~~l~~~g~I~~~~ 177 (193)
T TIGR03697 142 LRLSHQAIAEAIGS---TRVTITRLLGDLRKKKLISIHK 177 (193)
T ss_pred CCCCHHHHHHHhCC---cHHHHHHHHHHHHHCCCEEecC
Confidence 47899999999999 6799999999999999999874
No 434
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=73.23 E-value=4.6 Score=36.80 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=41.4
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChh
Q 037127 39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNA 106 (307)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~ 106 (307)
.|.+.|.. +.+.+.++||+.+|+ ....+.+.++.|...|+...... ...|.+.+.
T Consensus 8 ~il~~L~~-~~~~s~~~LA~~lgv---sr~tV~~~l~~L~~~G~~i~~~~---------~~Gy~L~~~ 62 (319)
T PRK11886 8 QLLSLLAD-GDFHSGEQLGEELGI---SRAAIWKHIQTLEEWGLDIFSVK---------GKGYRLAEP 62 (319)
T ss_pred HHHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCceEEec---------CCeEEecCc
Confidence 45555654 368999999999999 67999999999999999444431 246876554
No 435
>PRK12423 LexA repressor; Provisional
Probab=73.20 E-value=4.3 Score=34.41 Aligned_cols=37 Identities=14% Similarity=0.332 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
-+-|..|||+.+|+. ....++..|+.|...|+++..+
T Consensus 24 ~~Ps~~eia~~~g~~--s~~~v~~~l~~L~~~G~l~~~~ 60 (202)
T PRK12423 24 QPPSLAEIAQAFGFA--SRSVARKHVQALAEAGLIEVVP 60 (202)
T ss_pred CCCCHHHHHHHhCCC--ChHHHHHHHHHHHHCCCEEecC
Confidence 357999999999953 4567899999999999999886
No 436
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=72.63 E-value=2.9 Score=36.92 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=39.7
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
..|.+.|.+. +.+++.|||+.+++ .+.-++|=|..|...|++.+.-
T Consensus 8 ~~Il~~L~~~-~~v~v~eLa~~l~V---S~~TIRRDL~~Le~~g~l~r~~ 53 (256)
T PRK10434 8 AAILEYLQKQ-GKTSVEELAQYFDT---TGTTIRKDLVILEHAGTVIRTY 53 (256)
T ss_pred HHHHHHHHHc-CCEEHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEE
Confidence 3456777765 78999999999999 5789999999999999999874
No 437
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=72.41 E-value=4.9 Score=35.10 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=37.8
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
|.+.|.++ +..+++|||+.+++ .+.-++|-|..|...|.+.+..
T Consensus 9 Il~~l~~~-~~~~~~eLa~~l~V---S~~TiRRdL~~L~~~~~l~r~~ 52 (240)
T PRK10411 9 IVDLLLNH-TSLTTEALAEQLNV---SKETIRRDLNELQTQGKILRNH 52 (240)
T ss_pred HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 55666654 79999999999999 6799999999999999998763
No 438
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=72.34 E-value=3.2 Score=36.91 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=40.0
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
...|.+.|... +.+++.|||+.+++ .+.-++|=|..|...|++.+..
T Consensus 19 ~~~Il~~L~~~-~~vtv~eLa~~l~V---S~~TIRRDL~~Le~~G~l~r~~ 65 (269)
T PRK09802 19 REQIIQRLRQQ-GSVQVNDLSALYGV---STVTIRNDLAFLEKQGIAVRAY 65 (269)
T ss_pred HHHHHHHHHHc-CCEeHHHHHHHHCC---CHHHHHHHHHHHHhCCCeEEEe
Confidence 34456677765 68999999999999 6799999999999999999884
No 439
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=71.11 E-value=2.1 Score=38.45 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=67.5
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC--CccEEEechhhcc
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--PADAVVLKWILHD 267 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~ 267 (307)
...|+|+=.|.|+|...+.=......+..+|. |+.++..++ ..+|...+.+|-..+-| .+|=|.+...
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGLl--- 271 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGLL--- 271 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeeccc---
Confidence 47899999999999995555455668999999 888887766 56777888888877655 3776655442
Q ss_pred CChhHHHHHHHHHHHhccCCCCCc-EEEEEeeecCCC
Q 037127 268 WNDEECVKILKKCKEAITSNSKIG-KVIIIDMMRENK 303 (307)
Q Consensus 268 ~~~~~~~~~L~~~~~~L~p~~~gg-~lli~e~~~~~~ 303 (307)
|.. .+=.-.+.++|+|. || .+-|.|.+-.++
T Consensus 272 -PSs--e~~W~~A~k~Lk~e--ggsilHIHenV~~s~ 303 (351)
T KOG1227|consen 272 -PSS--EQGWPTAIKALKPE--GGSILHIHENVKDSD 303 (351)
T ss_pred -ccc--ccchHHHHHHhhhc--CCcEEEEeccccccc
Confidence 221 12233355667773 55 666777765554
No 440
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=70.99 E-value=7.7 Score=33.18 Aligned_cols=37 Identities=8% Similarity=0.077 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
|..++..+||+.+|+ +..-++.-|+.|...|+++..+
T Consensus 28 G~~L~e~eLae~lgV---SRtpVREAL~~L~~eGlv~~~~ 64 (224)
T PRK11534 28 DEKLRMSLLTSRYAL---GVGPLREALSQLVAERLVTVVN 64 (224)
T ss_pred CCcCCHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEEeC
Confidence 578899999999999 5688999999999999999886
No 441
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=70.95 E-value=2.3 Score=26.24 Aligned_cols=26 Identities=12% Similarity=0.290 Sum_probs=19.2
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCC
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTIN 63 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~ 63 (307)
+..|+..|..+ +..|+.+||+.+|++
T Consensus 5 D~~Il~~Lq~d-~r~s~~~la~~lglS 30 (42)
T PF13404_consen 5 DRKILRLLQED-GRRSYAELAEELGLS 30 (42)
T ss_dssp HHHHHHHHHH--TTS-HHHHHHHHTS-
T ss_pred HHHHHHHHHHc-CCccHHHHHHHHCcC
Confidence 44566777765 799999999999995
No 442
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=70.73 E-value=7.6 Score=31.22 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHcCCCCC----Cccc-------HHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 49 KPTTLNDLVSALTINPS----KTRC-------VYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~----~~~~-------l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
+|+.+..|+..+|.... +... ++..|+.|..+|++++.+ .|+ .+|+.|+.+.
T Consensus 66 gpvGV~~L~~~yGg~k~~G~~P~h~~~~sg~iiR~~LqqLE~~glVek~~----------~GR-~lT~~G~~~L 128 (150)
T PRK09333 66 GPVGVERLRTAYGGRKNRGVRPEHFVKGSGSIIRKILQQLEKAGLVEKTK----------KGR-VITPKGRSLL 128 (150)
T ss_pred CCccHHHHHHHHCCCcCCCCCCCccccCccHHHHHHHHHHHHCCCeeeCC----------CCC-EeCHHHHHHH
Confidence 79999999999998210 1233 899999999999999875 233 4888887554
No 443
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=70.72 E-value=6.2 Score=32.46 Aligned_cols=52 Identities=21% Similarity=0.364 Sum_probs=39.0
Q ss_pred HhCCcccccccCCCCCCHHHHHHHcCCC--CCCcccHHHHHHHHHhCCceeeec
Q 037127 36 VELSIPDIINKHGKPTTLNDLVSALTIN--PSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~--~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
-+.-|++.|...++++|+++|.+.+.-. .-+..-+.|.|+.|...|++.+-.
T Consensus 27 qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~~ 80 (169)
T PRK11639 27 QRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVE 80 (169)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 3445566665445799999999887521 115678999999999999999985
No 444
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=70.34 E-value=7.9 Score=33.32 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=39.9
Q ss_pred HHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 31 SLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 31 ~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
.|+.++-.|-|. .|..++-.+||+.+|+ +..-++.-|..|.+.|+++..+
T Consensus 24 ~Lr~~Il~g~l~----pG~~l~e~~La~~~gv---SrtPVReAL~rL~~eGlv~~~p 73 (230)
T COG1802 24 ELREAILSGELA----PGERLSEEELAEELGV---SRTPVREALRRLEAEGLVEIEP 73 (230)
T ss_pred HHHHHHHhCCCC----CCCCccHHHHHHHhCC---CCccHHHHHHHHHHCCCeEecC
Confidence 444444444443 2689999999999999 5678999999999999999996
No 445
>PF05491 RuvB_C: Holliday junction DNA helicase ruvB C-terminus; InterPro: IPR008823 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the C-terminal region of the proteins; it is thought to be a helicase DNA-binding domain.; GO: 0003677 DNA binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3PFI_B 1IXR_C 1HQC_B 1IXS_B 1IN8_A 1IN4_A 1IN5_A 1J7K_A 1IN6_A 1IN7_A.
Probab=70.08 E-value=5.5 Score=28.10 Aligned_cols=37 Identities=27% Similarity=0.487 Sum_probs=28.4
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHH-HHHhCCceeeec
Q 037127 48 GKPTTLNDLVSALTINPSKTRCVYRLMR-ILIHSGFFAQQT 87 (307)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~-~L~~~g~l~~~~ 87 (307)
|||+.++.||..+|. +.+-++.+.+ .|...||+.+.+
T Consensus 23 ggPvGl~tlA~~l~e---d~~Tie~v~EPyLiq~G~I~RT~ 60 (76)
T PF05491_consen 23 GGPVGLDTLAAALGE---DKETIEDVIEPYLIQIGFIQRTP 60 (76)
T ss_dssp TS-B-HHHHHHHTTS----HHHHHHTTHHHHHHTTSEEEET
T ss_pred CCCeeHHHHHHHHCC---CHhHHHHHhhHHHHHhhhHhhCc
Confidence 599999999999999 5666665544 789999999997
No 446
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=69.98 E-value=5.1 Score=33.26 Aligned_cols=49 Identities=14% Similarity=0.168 Sum_probs=41.3
Q ss_pred HhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 36 VELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
++..|.+.|...|...|+.+||.++|+ +..-+-|.|.-|...|.|...+
T Consensus 5 ~~~~i~~~l~~~~~~~~a~~i~k~l~i---~k~~vNr~LY~L~~~~~v~~~~ 53 (183)
T PHA02701 5 CASLILTLLSSSGDKLPAKRIAKELGI---SKHEANRCLYRLLESDAVSCED 53 (183)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCc---cHHHHHHHHHHHhhcCcEecCC
Confidence 456678888887546999999999999 5577999999999999997775
No 447
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=69.95 E-value=5.9 Score=33.02 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (307)
-++|-++||+.+|+ ..+.+.|+|..|...|++...
T Consensus 148 ~~~t~~~iA~~lG~---tretvsR~l~~l~~~g~I~~~ 182 (202)
T PRK13918 148 IYATHDELAAAVGS---VRETVTKVIGELSREGYIRSG 182 (202)
T ss_pred ecCCHHHHHHHhCc---cHHHHHHHHHHHHHCCCEEcC
Confidence 47899999999999 579999999999999999966
No 448
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=69.89 E-value=8.9 Score=33.78 Aligned_cols=70 Identities=26% Similarity=0.341 Sum_probs=44.4
Q ss_pred HHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCCCccEEEechhhccCChhHHHHHHHHHHHhccC
Q 037127 210 VAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITS 286 (307)
Q Consensus 210 ~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p 286 (307)
++..|.+..+..+++++|. +..++.+.+ ..-+.-...+ .+.+.++|+|++.-.+ .....+|+++...+++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~-~g~~~~~~~~-~~~~~~~DlvvlavP~-----~~~~~~l~~~~~~~~~ 71 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE-LGIIDEASTD-IEAVEDADLVVLAVPV-----SAIEDVLEEIAPYLKP 71 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH-TTSSSEEESH-HHHGGCCSEEEE-S-H-----HHHHHHHHHHHCGS-T
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH-CCCeeeccCC-HhHhcCCCEEEEcCCH-----HHHHHHHHHhhhhcCC
Confidence 4677888888999999999 777777753 1222222222 2234468999887544 4567888888888887
No 449
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=69.58 E-value=14 Score=31.80 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (307)
-+.|-++||+.+|+ ....+.|+|..|...|+++..
T Consensus 178 i~lt~~~IA~~lGi---sretlsR~L~~L~~~GlI~~~ 212 (230)
T PRK09391 178 LPMSRRDIADYLGL---TIETVSRALSQLQDRGLIGLS 212 (230)
T ss_pred ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEec
Confidence 47899999999999 578999999999999999876
No 450
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=69.47 E-value=5.2 Score=31.38 Aligned_cols=47 Identities=17% Similarity=0.279 Sum_probs=35.6
Q ss_pred hCCcccccccCCCCCCHHHHHHHc----CCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSAL----TINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~----g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
++-|...|-.. ++.|+.+|.+.+ ++ ....+..+|+-|...|++....
T Consensus 6 E~~VM~vlW~~-~~~t~~eI~~~l~~~~~~---~~tTv~T~L~rL~~KG~v~~~k 56 (130)
T TIGR02698 6 EWEVMRVVWTL-GETTSRDIIRILAEKKDW---SDSTIKTLLGRLVDKGCLTTEK 56 (130)
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHHhhccCC---cHHHHHHHHHHHHHCCceeeec
Confidence 34455555544 689999966665 56 5678899999999999999775
No 451
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=68.99 E-value=16 Score=31.91 Aligned_cols=66 Identities=11% Similarity=0.142 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 17 AHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 17 ~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+.+.+++.+.....=|.+. -.|++.|...++-++..+||+++|+ ....+++=++.|.+.|+++..+
T Consensus 167 ka~Vq~Ai~tLSySEleAv--~~IL~~L~~~egrlse~eLAerlGV---SRs~ireAlrkLE~aGvIe~r~ 232 (251)
T TIGR02787 167 KAAVQMAINTLSYSELEAV--EHIFEELDGNEGLLVASKIADRVGI---TRSVIVNALRKLESAGVIESRS 232 (251)
T ss_pred HHHHHHHHHhccHhHHHHH--HHHHHHhccccccccHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecc
Confidence 4455555554444433333 2467778763478999999999999 5688899999999999999885
No 452
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=68.75 E-value=53 Score=25.94 Aligned_cols=98 Identities=18% Similarity=0.167 Sum_probs=54.8
Q ss_pred eEEEecC-C-chHHHHHHHHHCCCC-eEEEecchHHHHhc--hh------cC-CCeEEEecCCCCCCCCccEEEechhhc
Q 037127 199 SLVDVGG-A-TGTVAKAIAKAFPNL-ECTDFDLPHVVNGL--ES------DL-ANLKYVGGDMFEAIPPADAVVLKWILH 266 (307)
Q Consensus 199 ~vlDvGg-G-~G~~~~~l~~~~p~~-~~~~~Dl~~~~~~a--~~------~~-~rv~~~~~d~~~~~p~~D~i~~~~vLh 266 (307)
+|.=||+ | .|.....++...+-. +.+++|..+-...+ .+ .. ..+.... +..+.+.++|++++.--..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~-~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS-GDYEALKDADIVVITAGVP 80 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE-SSGGGGTTESEEEETTSTS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc-ccccccccccEEEEecccc
Confidence 4666788 5 566655555555443 58999995322222 22 22 2344444 5555566899988766443
Q ss_pred cCC---h----hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 267 DWN---D----EECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 267 ~~~---~----~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
.-+ . +.+.++++++.+.++..+|.+.++++.
T Consensus 81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 222 2 235667777776664323478877763
No 453
>PTZ00357 methyltransferase; Provisional
Probab=68.59 E-value=34 Score=34.70 Aligned_cols=130 Identities=14% Similarity=0.087 Sum_probs=72.6
Q ss_pred CCccccccCCcHHHHHHHHHHHhch-hhhH-----------HHH------HHhccc--cccCCCeEEEecCCchHHHHHH
Q 037127 155 KSFWEYAGDEPKINNFFNEAMASDA-RLAT-----------RVV------IHKCKN--VFEGLNSLVDVGGATGTVAKAI 214 (307)
Q Consensus 155 ~~~~~~~~~~~~~~~~f~~~m~~~~-~~~~-----------~~~------~~~~~~--~~~~~~~vlDvGgG~G~~~~~l 214 (307)
...|+.+++++-....|.+++...- .+.. ..+ +...+. .......|+=+|+|.|=+....
T Consensus 639 S~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdra 718 (1072)
T PTZ00357 639 SGVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDEC 718 (1072)
T ss_pred hhhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHH
Confidence 3558888999988888888876532 1110 000 001110 0012246888999999888776
Q ss_pred HHHCC----CCeEEEecc-hHHHHhc--h--h---c-------CCCeEEEecCCCC-CCC-------------CccEEEe
Q 037127 215 AKAFP----NLECTDFDL-PHVVNGL--E--S---D-------LANLKYVGGDMFE-AIP-------------PADAVVL 261 (307)
Q Consensus 215 ~~~~p----~~~~~~~Dl-~~~~~~a--~--~---~-------~~rv~~~~~d~~~-~~p-------------~~D~i~~ 261 (307)
+++.. .+++++++- |+.+... + + . .++|+++..||.+ ..+ .+|++ .
T Consensus 719 LrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIV-V 797 (1072)
T PTZ00357 719 LHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLI-V 797 (1072)
T ss_pred HHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccccccccccccccccee-h
Confidence 65543 356777886 3422111 1 1 1 4579999999987 211 37855 4
Q ss_pred chhhccCChhH-HHHHHHHHHHhcc
Q 037127 262 KWILHDWNDEE-CVKILKKCKEAIT 285 (307)
Q Consensus 262 ~~vLh~~~~~~-~~~~L~~~~~~L~ 285 (307)
+..|--|.|+| ...-|..+.+.||
T Consensus 798 SELLGSFGDNELSPECLDGaQrfLK 822 (1072)
T PTZ00357 798 SELLGSLGDNELSPECLEAFHAQLE 822 (1072)
T ss_pred HhhhcccccccCCHHHHHHHHHhhh
Confidence 55555555442 1233444444444
No 454
>PRK13239 alkylmercury lyase; Provisional
Probab=68.51 E-value=3.4 Score=35.13 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=30.0
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
-|+..|.+ |.|.|+++||+.+|. +.+.+++.|+.| ...+.++
T Consensus 26 ~llr~la~-G~pvt~~~lA~~~~~---~~~~v~~~L~~l---~~~~~d~ 67 (206)
T PRK13239 26 PLLRLLAK-GRPVSVTTLAAALGW---PVEEVEAVLEAM---PDTEYDE 67 (206)
T ss_pred HHHHHHHc-CCCCCHHHHHHHhCC---CHHHHHHHHHhC---CCeEECC
Confidence 35666774 799999999999999 567776666665 4444443
No 455
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=68.41 E-value=4.9 Score=32.22 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=34.7
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCce
Q 037127 39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFF 83 (307)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l 83 (307)
-|+++|-.+ +.+|-++||+.+|+ +...++++|..|...+++
T Consensus 5 ~v~d~L~~~-~~~~dedLa~~l~i---~~n~vRkiL~~L~ed~~~ 45 (147)
T smart00531 5 LVLDALMRN-GCVTEEDLAELLGI---KQKQLRKILYLLYDEKLI 45 (147)
T ss_pred eehHHHHhc-CCcCHHHHHHHhCC---CHHHHHHHHHHHHhhhcc
Confidence 467777665 68999999999999 689999999999995554
No 456
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=67.90 E-value=7.1 Score=28.26 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
.-+|+..||+++++ .-...++.|+.|...|++....
T Consensus 40 K~ITps~lserlkI---~~SlAr~~Lr~L~~kG~Ik~V~ 75 (86)
T PRK09334 40 KIVTPYTLASKYGI---KISVAKKVLRELEKRGVLVLYS 75 (86)
T ss_pred cEEcHHHHHHHhcc---hHHHHHHHHHHHHHCCCEEEEe
Confidence 67899999999999 6899999999999999998774
No 457
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=67.69 E-value=4.8 Score=24.49 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHH
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILI 78 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~ 78 (307)
.+.|+++||+.+|+ ++..+.|.++...
T Consensus 7 ~~~~l~~iA~~~g~---S~~~f~r~Fk~~~ 33 (42)
T PF00165_consen 7 QKLTLEDIAEQAGF---SPSYFSRLFKKET 33 (42)
T ss_dssp SS--HHHHHHHHTS----HHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 57999999999999 6789999887643
No 458
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=67.39 E-value=5.3 Score=35.90 Aligned_cols=37 Identities=24% Similarity=0.447 Sum_probs=32.8
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHH-HHHhCCceeeec
Q 037127 48 GKPTTLNDLVSALTINPSKTRCVYRLMR-ILIHSGFFAQQT 87 (307)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~-~L~~~g~l~~~~ 87 (307)
|++.+++++|+.+|. ++..++++++ .|+..|++....
T Consensus 253 ~~~~~~~~ia~~lg~---~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 253 GGPVGLKTLAAALGE---DADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred CCcccHHHHHHHhCC---CcchHHHhhhHHHHHcCCcccCC
Confidence 478999999999999 6789999999 799999998553
No 459
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=67.30 E-value=65 Score=26.19 Aligned_cols=90 Identities=13% Similarity=0.008 Sum_probs=42.7
Q ss_pred cCCCeEEEecCCchHH-HHHHHHHCCCCeEEEecchHHHHhchh-cCCCeEEEecCCCCCCCCccEEEechhhccCChhH
Q 037127 195 EGLNSLVDVGGATGTV-AKAIAKAFPNLECTDFDLPHVVNGLES-DLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEE 272 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~-~~~l~~~~p~~~~~~~Dl~~~~~~a~~-~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~~~~~~ 272 (307)
...++|+=-|+|+... ...++...++.-..++|..+. ++.+- ...++..+.-+.+... ..|++++..-.|
T Consensus 66 ~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~-K~G~~~PGt~ipI~~p~~l~~~-~pd~vivlaw~y------ 137 (160)
T PF08484_consen 66 AEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPL-KQGKYLPGTHIPIVSPEELKER-KPDYVIVLAWNY------ 137 (160)
T ss_dssp HTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GG-GTTEE-TTT--EEEEGGG--SS---SEEEES-GGG------
T ss_pred HcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChh-hcCcccCCCCCeECCHHHHhhC-CCCEEEEcChhh------
Confidence 4567899888886544 455565545555667776321 11111 4567777777665532 246655433222
Q ss_pred HHHHHHHHHHhccCCCCCcEEEE
Q 037127 273 CVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 273 ~~~~L~~~~~~L~p~~~gg~lli 295 (307)
...|++++.+.+.. ||++++
T Consensus 138 ~~EI~~~~~~~~~~---gg~fi~ 157 (160)
T PF08484_consen 138 KDEIIEKLREYLER---GGKFIV 157 (160)
T ss_dssp HHHHHHHTHHHHHT---T-EEEE
T ss_pred HHHHHHHHHHHHhc---CCEEEE
Confidence 23778888888887 888876
No 460
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=66.84 E-value=2.9 Score=32.03 Aligned_cols=63 Identities=21% Similarity=0.376 Sum_probs=43.8
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCC--CCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecCh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTIN--PSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTN 105 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~--~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~ 105 (307)
+.-|++.|...+++.|+++|-+.+.-. ..+...+.|.|+.|...|++.+.... ++...|....
T Consensus 10 R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~~~~------~~~~~Y~~~~ 74 (120)
T PF01475_consen 10 RLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKIEFG------DGESRYELST 74 (120)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEET------TSEEEEEESS
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEEEcC------CCcceEeecC
Confidence 444566666545799999999988521 11456799999999999999998741 2234677765
No 461
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=66.61 E-value=5.9 Score=33.83 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=36.5
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
|++.+....++.|.+|||+++++ .+.-+++.+..|+..|++..+-
T Consensus 167 Vl~~~~~g~~g~s~~eIa~~l~i---S~~Tv~~~~~~~~~~~~~~~~~ 211 (225)
T PRK10046 167 VRKLFKEPGVQHTAETVAQALTI---SRTTARRYLEYCASRHLIIAEI 211 (225)
T ss_pred HHHHHHcCCCCcCHHHHHHHhCc---cHHHHHHHHHHHHhCCeEEEEe
Confidence 45555541126899999999999 6799999999999999999874
No 462
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=66.49 E-value=7.3 Score=33.37 Aligned_cols=36 Identities=11% Similarity=0.240 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
-+.|-++||+.+|+ ..+.+.|.|..|...|+++...
T Consensus 168 ~~~t~~~lA~~lG~---sretvsR~L~~L~~~G~I~~~~ 203 (226)
T PRK10402 168 YHEKHTQAAEYLGV---SYRHLLYVLAQFIQDGYLKKSK 203 (226)
T ss_pred ccchHHHHHHHHCC---cHHHHHHHHHHHHHCCCEEeeC
Confidence 35688999999999 5799999999999999999874
No 463
>PRK11642 exoribonuclease R; Provisional
Probab=66.45 E-value=6.7 Score=40.62 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=37.3
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCC-CcccHHHHHHHHHhCCceeeec
Q 037127 40 IPDIINKHGKPTTLNDLVSALTINPS-KTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~-~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
|++.|...+.|++..+||+.++++.. ....|++.|+.|...|.+.+..
T Consensus 24 Il~~l~~~~~~~~~~~L~~~l~l~~~~~~~~l~~~L~~L~~~g~l~~~~ 72 (813)
T PRK11642 24 ILEHLTKREKPASREELAVELNIEGEEQLEALRRRLRAMERDGQLVFTR 72 (813)
T ss_pred HHHHHHhcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHHHHCCCEEEcC
Confidence 44555443489999999999999532 2356999999999999998765
No 464
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=66.30 E-value=58 Score=25.07 Aligned_cols=80 Identities=14% Similarity=0.073 Sum_probs=55.0
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEecCCCCCC----CCccEEEechhhccCCh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAI----PPADAVVLKWILHDWND 270 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~~----p~~D~i~~~~vLh~~~~ 270 (307)
....+|++||-|.=......++++ +..++..|+.+- . ....++++..|+++|- -++|+|..-+ |.
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~--~---a~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----pp 80 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK--T---APEGLRFVVDDITNPNISIYEGADLIYSIR-----PP 80 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc--c---CcccceEEEccCCCccHHHhhCccceeecC-----CC
Confidence 345699999998765555444444 378888998432 2 2367999999999962 2588877654 55
Q ss_pred hHHHHHHHHHHHhcc
Q 037127 271 EECVKILKKCKEAIT 285 (307)
Q Consensus 271 ~~~~~~L~~~~~~L~ 285 (307)
+|....+=.++++++
T Consensus 81 pEl~~~ildva~aVg 95 (129)
T COG1255 81 PELQSAILDVAKAVG 95 (129)
T ss_pred HHHHHHHHHHHHhhC
Confidence 566666777777775
No 465
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=66.29 E-value=12 Score=30.14 Aligned_cols=82 Identities=18% Similarity=0.175 Sum_probs=46.9
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cC------CCeEEEecCCCCCCCCccEEEechhh
Q 037127 199 SLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DL------ANLKYVGGDMFEAIPPADAVVLKWIL 265 (307)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~------~rv~~~~~d~~~~~p~~D~i~~~~vL 265 (307)
+|.=+|+|.+..+.+..-...+.+++++.. ++.++..++ .. .++.+ ..|+.+-..++|+|++.-.-
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~~ad~IiiavPs 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALEDADIIIIAVPS 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHTT-SEEEE-S-G
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhCcccEEEecccH
Confidence 356689998877665443333567888888 555555543 11 12222 22222223468988765433
Q ss_pred ccCChhHHHHHHHHHHHhccC
Q 037127 266 HDWNDEECVKILKKCKEAITS 286 (307)
Q Consensus 266 h~~~~~~~~~~L~~~~~~L~p 286 (307)
.....+++++...+++
T Consensus 80 -----~~~~~~~~~l~~~l~~ 95 (157)
T PF01210_consen 80 -----QAHREVLEQLAPYLKK 95 (157)
T ss_dssp -----GGHHHHHHHHTTTSHT
T ss_pred -----HHHHHHHHHHhhccCC
Confidence 3345789999999986
No 466
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=66.22 E-value=13 Score=31.29 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=39.1
Q ss_pred HHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 31 SLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 31 ~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
.|...+-.|-+ .. |..++-.+||+.+|+ +..-++.-|..|...|+++..+
T Consensus 19 ~l~~~I~~g~l---~p-G~~L~e~~La~~lgV---SRtpVReAL~~L~~eGlv~~~~ 68 (212)
T TIGR03338 19 EIERAILSGEL---PP-GAKLNESDIAARLGV---SRGPVREAFRALEEAGLVRNEK 68 (212)
T ss_pred HHHHHHHcCCC---CC-CCEecHHHHHHHhCC---ChHHHHHHHHHHHHCCCEEEec
Confidence 34444444433 32 578899999999999 5688999999999999999886
No 467
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=66.05 E-value=5.8 Score=32.87 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=38.3
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
-|+++|... |-+|=++||..+|+ ...-++++|..|...|++....
T Consensus 22 ~v~~~l~~k-ge~tDeela~~l~i---~~~~vrriL~~L~e~~li~~~k 66 (176)
T COG1675 22 LVVDALLEK-GELTDEELAELLGI---KKNEVRRILYALYEDGLISYRK 66 (176)
T ss_pred HHHHHHHhc-CCcChHHHHHHhCc---cHHHHHHHHHHHHhCCceEEEe
Confidence 456777764 47999999999999 6899999999999999999654
No 468
>PF13518 HTH_28: Helix-turn-helix domain
Probab=65.88 E-value=4.8 Score=25.46 Aligned_cols=29 Identities=17% Similarity=0.426 Sum_probs=26.1
Q ss_pred CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCc
Q 037127 51 TTLNDLVSALTINPSKTRCVYRLMRILIHSGF 82 (307)
Q Consensus 51 ~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~ 82 (307)
.|+.++|+.+|+ +...+.+|++.....|+
T Consensus 13 ~s~~~~a~~~gi---s~~tv~~w~~~y~~~G~ 41 (52)
T PF13518_consen 13 ESVREIAREFGI---SRSTVYRWIKRYREGGI 41 (52)
T ss_pred CCHHHHHHHHCC---CHhHHHHHHHHHHhcCH
Confidence 499999999999 67999999999888775
No 469
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=64.87 E-value=24 Score=32.13 Aligned_cols=92 Identities=17% Similarity=0.170 Sum_probs=61.0
Q ss_pred CCeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCC---CCCCccEEEechhhccCCh
Q 037127 197 LNSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFE---AIPPADAVVLKWILHDWND 270 (307)
Q Consensus 197 ~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~---~~p~~D~i~~~~vLh~~~~ 270 (307)
+.+|+-|||| .|.-+..++-.. +..++++|+ .+-++.... ...|+...-.+... ....+|+++-.-.+---..
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka 246 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA 246 (371)
T ss_pred CccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence 4678889999 566676666544 568999999 455555554 56777777665544 3567998876654432222
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEE
Q 037127 271 EECVKILKKCKEAITSNSKIGKVI 294 (307)
Q Consensus 271 ~~~~~~L~~~~~~L~p~~~gg~ll 294 (307)
+ .-+.++..+.|+| |+.|+
T Consensus 247 P--kLvt~e~vk~Mkp---GsViv 265 (371)
T COG0686 247 P--KLVTREMVKQMKP---GSVIV 265 (371)
T ss_pred c--eehhHHHHHhcCC---CcEEE
Confidence 2 3457777899998 66554
No 470
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=64.69 E-value=6.6 Score=34.58 Aligned_cols=45 Identities=11% Similarity=0.270 Sum_probs=39.6
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
.|++.|.+. |.++++|||+.+++ .+.-.+|=|..|...|++.+.-
T Consensus 9 ~Il~~l~~~-g~v~v~eLa~~~~V---S~~TIRRDL~~Le~~g~l~R~h 53 (253)
T COG1349 9 KILELLKEK-GKVSVEELAELFGV---SEMTIRRDLNELEEQGLLLRVH 53 (253)
T ss_pred HHHHHHHHc-CcEEHHHHHHHhCC---CHHHHHHhHHHHHHCCcEEEEe
Confidence 456677765 79999999999999 6799999999999999999974
No 471
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=64.39 E-value=7.4 Score=31.16 Aligned_cols=66 Identities=15% Similarity=0.285 Sum_probs=47.4
Q ss_pred HhCCcccccccCCCCCCHHHHHHHcCC--CCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127 36 VELSIPDIINKHGKPTTLNDLVSALTI--NPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS 107 (307)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~g~--~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s 107 (307)
-+.-|++.|...+++.|+++|=+.+.- ++....-+.|.|+.|...|++.+-... ++..+|.++..+
T Consensus 22 qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~~~~------~~~~~y~~~~~~ 89 (145)
T COG0735 22 QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHRLEFE------GGKTRYELNSEP 89 (145)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEEEeC------CCEEEEecCCCC
Confidence 356677778766678999999877652 222567899999999999999998641 123457666553
No 472
>PF08222 HTH_CodY: CodY helix-turn-helix domain; InterPro: IPR013198 This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; PDB: 2B0L_C.
Probab=64.38 E-value=15 Score=24.32 Aligned_cols=36 Identities=11% Similarity=0.221 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
|-++...||++.|+ .......-||-|.+.|+++...
T Consensus 3 g~lvas~iAd~~Gi---TRSvIVNALRKleSaGvIesrS 38 (61)
T PF08222_consen 3 GRLVASKIADRVGI---TRSVIVNALRKLESAGVIESRS 38 (61)
T ss_dssp EEE-HHHHHHHHT-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred ceehHHHHHHHhCc---cHHHHHHHHHHHHhcCceeecc
Confidence 46788999999999 4677788899999999999764
No 473
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=64.24 E-value=23 Score=34.61 Aligned_cols=91 Identities=14% Similarity=0.206 Sum_probs=55.8
Q ss_pred CCCeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCC------------------C-----
Q 037127 196 GLNSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDM------------------F----- 250 (307)
Q Consensus 196 ~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~------------------~----- 250 (307)
.+.+++=+|+| .|..+..+++.. +.+++++|. +...+.++.... +++.-|. .
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~lGa--~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~ 239 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSMGA--EFLELDFKEEGGSGDGYAKVMSEEFIAAEME 239 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCC--eEEeccccccccccccceeecCHHHHHHHHH
Confidence 35789999999 557777777776 457899998 667777765221 2212121 1
Q ss_pred --C-CCCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEE
Q 037127 251 --E-AIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVI 294 (307)
Q Consensus 251 --~-~~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~ll 294 (307)
. ...++|+++..-.+.--+.+ .-+.++..+.||| |+.|+
T Consensus 240 ~~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKp---GsvIV 281 (511)
T TIGR00561 240 LFAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKA---GSVIV 281 (511)
T ss_pred HHHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCC---CCEEE
Confidence 0 12358988655544332222 2467777888998 77644
No 474
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=64.21 E-value=18 Score=26.74 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHc--------CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127 49 KPTTLNDLVSAL--------TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK 112 (307)
Q Consensus 49 ~~~t~~eLA~~~--------g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~ 112 (307)
+|.+--+|.+.+ .+ ++..+.+.|+.|...|+++..... ..++...-.|++|+.|+.+..
T Consensus 16 ~~~~GYei~~~l~~~~~~~~~i---~~gtlY~~L~rLe~~GlI~~~~~~--~~~~~~rk~y~iT~~Gr~~l~ 82 (100)
T TIGR03433 16 GPLHGYGIAQRIQQISEDVLQV---EEGSLYPALHRLERRGWIAAEWGE--SENNRRAKFYRLTAAGRKQLA 82 (100)
T ss_pred CCCCHHHHHHHHHHHcCCcccc---CCCcHHHHHHHHHHCCCeEEEeee--cCCCCCceEEEECHHHHHHHH
Confidence 577777777774 34 678899999999999999985210 011112346999999996553
No 475
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=64.03 E-value=3.7 Score=28.74 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceee
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQ 85 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~ 85 (307)
...|..|||+.+|+ ++..++.++..+...|.+.+
T Consensus 31 eGlS~kEIAe~LGI---S~~TVk~~l~~~~~~~~~~~ 64 (73)
T TIGR03879 31 AGKTASEIAEELGR---TEQTVRNHLKGETKAGGLVK 64 (73)
T ss_pred cCCCHHHHHHHHCc---CHHHHHHHHhcCcccchHHH
Confidence 46999999999999 67899999988877777654
No 476
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=63.58 E-value=33 Score=25.59 Aligned_cols=83 Identities=24% Similarity=0.306 Sum_probs=46.2
Q ss_pred EEecCCchHHHHHHHHHC--CCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCC-----CC--CccEEEechhhccCCh
Q 037127 201 VDVGGATGTVAKAIAKAF--PNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEA-----IP--PADAVVLKWILHDWND 270 (307)
Q Consensus 201 lDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~-----~p--~~D~i~~~~vLh~~~~ 270 (307)
+=+|+| .++..+++.. .+.+++++|. +..++.+++ ..+.++.||..++ .. .++.+++..- ++
T Consensus 2 vI~G~g--~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~--~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d 73 (116)
T PF02254_consen 2 VIIGYG--RIGREIAEQLKEGGIDVVVIDRDPERVEELRE--EGVEVIYGDATDPEVLERAGIEKADAVVILTD----DD 73 (116)
T ss_dssp EEES-S--HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH--TTSEEEES-TTSHHHHHHTTGGCESEEEEESS----SH
T ss_pred EEEcCC--HHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh--cccccccccchhhhHHhhcCccccCEEEEccC----CH
Confidence 334554 4554443322 3457999998 777777763 2288999999983 12 4776655432 44
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEE
Q 037127 271 EECVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 271 ~~~~~~L~~~~~~L~p~~~gg~lli 295 (307)
+....+...+ +.+.| ..+++.
T Consensus 74 ~~n~~~~~~~-r~~~~---~~~ii~ 94 (116)
T PF02254_consen 74 EENLLIALLA-RELNP---DIRIIA 94 (116)
T ss_dssp HHHHHHHHHH-HHHTT---TSEEEE
T ss_pred HHHHHHHHHH-HHHCC---CCeEEE
Confidence 4444454544 44444 455554
No 477
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=63.57 E-value=35 Score=30.95 Aligned_cols=100 Identities=16% Similarity=0.063 Sum_probs=54.1
Q ss_pred CCCeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hH-HHHhchhcCCCeEEEec-CCCCCCCCccEEEechhhccCChh
Q 037127 196 GLNSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PH-VVNGLESDLANLKYVGG-DMFEAIPPADAVVLKWILHDWNDE 271 (307)
Q Consensus 196 ~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~-~~~~a~~~~~rv~~~~~-d~~~~~p~~D~i~~~~vLh~~~~~ 271 (307)
...+|+-||+| .|......+......++++++. +. ..+.+.+... ..... +..+....+|+++..-.-...
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~--~~~~~~~~~~~l~~aDvVi~at~~~~~--- 251 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG--NAVPLDELLELLNEADVVISATGAPHY--- 251 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC--eEEeHHHHHHHHhcCCEEEECCCCCch---
Confidence 46789999987 3444444444433346888888 33 3344443222 22221 222224468998877553222
Q ss_pred HHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCCC
Q 037127 272 ECVKILKKCKEAITSNSKIGKVIIIDMMRENKKGD 306 (307)
Q Consensus 272 ~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~~~ 306 (307)
..++..+.+.. + ++..+++|...|.+-++
T Consensus 252 --~~~~~~~~~~~-~---~~~~~viDlavPrdi~~ 280 (311)
T cd05213 252 --AKIVERAMKKR-S---GKPRLIVDLAVPRDIEP 280 (311)
T ss_pred --HHHHHHHHhhC-C---CCCeEEEEeCCCCCCch
Confidence 23333333322 2 46678889998877665
No 478
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=63.22 E-value=31 Score=32.85 Aligned_cols=103 Identities=22% Similarity=0.267 Sum_probs=68.2
Q ss_pred CCCeEEEecC-Cch--H----HHHHHHHHCCCCeEEEecc--hHHHHhchh--cCCCeEEEecCCCC-CCC---------
Q 037127 196 GLNSLVDVGG-ATG--T----VAKAIAKAFPNLECTDFDL--PHVVNGLES--DLANLKYVGGDMFE-AIP--------- 254 (307)
Q Consensus 196 ~~~~vlDvGg-G~G--~----~~~~l~~~~p~~~~~~~Dl--~~~~~~a~~--~~~rv~~~~~d~~~-~~p--------- 254 (307)
++..|+=+|= |+| . ++..+.++.-.+-++..|. |..+++.+. ..-+|.|...+-.+ |..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 3556666652 444 3 3334444333344688887 888888877 34455665543222 321
Q ss_pred ---CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 255 ---PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 255 ---~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
.+|++++--.--+--|++...-+++++++++| .-.++++|....
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P---~E~llVvDam~G 225 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINP---DETLLVVDAMIG 225 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCC---CeEEEEEecccc
Confidence 27999988776555688889999999999999 789999997654
No 479
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=63.05 E-value=47 Score=29.88 Aligned_cols=84 Identities=17% Similarity=0.082 Sum_probs=45.1
Q ss_pred CCeEEEecCCc-h-HHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCCCccEEEechhhccCChhHH
Q 037127 197 LNSLVDVGGAT-G-TVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEEC 273 (307)
Q Consensus 197 ~~~vlDvGgG~-G-~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~~~~~~~ 273 (307)
..+|.=||+|. | .++..+.+.....+++++|. ++..+.+++...... ...+..+...++|+|++.-.. ...
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~-~~~~~~~~~~~aDvViiavp~-----~~~ 79 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDR-VTTSAAEAVKGADLVILCVPV-----GAS 79 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCce-ecCCHHHHhcCCCEEEECCCH-----HHH
Confidence 35688889885 3 33344444432247889998 555665553211111 111211123458888776543 223
Q ss_pred HHHHHHHHHhccC
Q 037127 274 VKILKKCKEAITS 286 (307)
Q Consensus 274 ~~~L~~~~~~L~p 286 (307)
..+++.+...+++
T Consensus 80 ~~v~~~l~~~l~~ 92 (307)
T PRK07502 80 GAVAAEIAPHLKP 92 (307)
T ss_pred HHHHHHHHhhCCC
Confidence 4566777777776
No 480
>PF09681 Phage_rep_org_N: N-terminal phage replisome organiser (Phage_rep_org_N); InterPro: IPR010056 This entry is represented by the N-terminal domain of Bacteriophage A500, Gp45. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The proteins in this entry contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The low-complexity region is adjacent to this N-terminal domain.
Probab=63.02 E-value=14 Score=28.59 Aligned_cols=49 Identities=14% Similarity=0.092 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchh
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLL 110 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l 110 (307)
-|-|.++||..++- +.+.++.-|.++...|+++..+ ++.|..+...+..
T Consensus 52 ipy~~e~LA~~~~~---~~~~V~~AL~~f~k~glIe~~e----------d~~i~i~~~~~~~ 100 (121)
T PF09681_consen 52 IPYTAEMLALEFDR---PVDTVRLALAVFQKLGLIEIDE----------DGVIYIPNWEKHQ 100 (121)
T ss_pred CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec----------CCeEEeecHHHHh
Confidence 69999999999998 6899999999999999999986 6888887654433
No 481
>PF11994 DUF3489: Protein of unknown function (DUF3489); InterPro: IPR021880 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important.
Probab=62.78 E-value=19 Score=25.07 Aligned_cols=43 Identities=12% Similarity=0.141 Sum_probs=30.6
Q ss_pred ccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHH--HhCCceeeec
Q 037127 41 PDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRIL--IHSGFFAQQT 87 (307)
Q Consensus 41 fd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L--~~~g~l~~~~ 87 (307)
.+.|... +..|++||++++|+. +..++-.|--+ -.+|+--...
T Consensus 16 i~mL~rp-~GATi~ei~~atGWq---~HTvRgalsg~~kKklGl~i~s~ 60 (72)
T PF11994_consen 16 IAMLRRP-EGATIAEICEATGWQ---PHTVRGALSGLLKKKLGLTITSE 60 (72)
T ss_pred HHHHcCC-CCCCHHHHHHhhCCc---hhhHHHHHHHHHHHhcCcEEEee
Confidence 3445543 679999999999994 56777777666 5667765554
No 482
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=62.72 E-value=9.7 Score=36.54 Aligned_cols=130 Identities=14% Similarity=0.182 Sum_probs=78.3
Q ss_pred CcHHHHHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----
Q 037127 164 EPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----- 237 (307)
Q Consensus 164 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----- 237 (307)
.++.+-.|+..|-+.-......... .......+|=||-|.|.+..-+...+|..+.+++.+ |++++.+++
T Consensus 267 ~~~l~s~~h~~m~~g~aL~~n~~~~----~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~ 342 (482)
T KOG2352|consen 267 KPELASQYHQMMIGGLALIMNRPPQ----KLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFM 342 (482)
T ss_pred CcccCcchhhhhhccceeccccCch----hccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchh
Confidence 4445555666665443332221111 123345677788888999999999999989999998 999999987
Q ss_pred cCCCeEEEecCCCC-------C---CCCccEEEechh---hccC---Chh-HHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 238 DLANLKYVGGDMFE-------A---IPPADAVVLKWI---LHDW---NDE-ECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 238 ~~~rv~~~~~d~~~-------~---~p~~D~i~~~~v---Lh~~---~~~-~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
-..|...+..|-.+ . ...+|+++.--- -|-. +.+ -+..+|..++.+++| .|.+ |+..+.
T Consensus 343 q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p---~g~f-~inlv~ 418 (482)
T KOG2352|consen 343 QSDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPP---RGMF-IINLVT 418 (482)
T ss_pred hhhhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCc---cceE-EEEEec
Confidence 12244444444332 1 113777754221 2222 222 356799999999999 5655 554444
Q ss_pred C
Q 037127 301 E 301 (307)
Q Consensus 301 ~ 301 (307)
.
T Consensus 419 r 419 (482)
T KOG2352|consen 419 R 419 (482)
T ss_pred C
Confidence 3
No 483
>PRK10736 hypothetical protein; Provisional
Probab=62.52 E-value=11 Score=35.24 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=38.8
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
..|++.|.. .|.++++|++++|+ +...+...|-.|.-.|++...+
T Consensus 311 ~~v~~~l~~--~~~~iD~L~~~~~l---~~~~v~~~L~~LEl~G~v~~~~ 355 (374)
T PRK10736 311 PELLANVGD--EVTPVDVVAERAGQ---PVPEVVTQLLELELAGWIAAVP 355 (374)
T ss_pred HHHHHhcCC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEEcC
Confidence 356777754 68999999999999 6788999999999999999986
No 484
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=62.26 E-value=9.9 Score=28.66 Aligned_cols=37 Identities=22% Similarity=0.181 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecc
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTL 88 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~ 88 (307)
.-+|+..||+++++ .-...++.|+.|...|++.....
T Consensus 58 K~ITp~~lserlkI---~~SlAr~~Lr~L~~kG~Ik~V~k 94 (105)
T PF03297_consen 58 KLITPSVLSERLKI---NGSLARKALRELESKGLIKPVSK 94 (105)
T ss_dssp SCECHHHHHHHHCC---SCHHHHHHHHHHHHCCSSEEEEC
T ss_pred cEeeHHHHHHhHhh---HHHHHHHHHHHHHHCCCEEEEec
Confidence 56999999999999 67999999999999999998853
No 485
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=62.14 E-value=5.1 Score=29.53 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=30.4
Q ss_pred HHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHH
Q 037127 34 CAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRIL 77 (307)
Q Consensus 34 ~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L 77 (307)
.+.+.||+..|-. ++.|-.|||+.+|+ ....+.|+=+.|
T Consensus 41 l~~R~~i~~~Ll~--~~~tQrEIa~~lGi---S~atIsR~sn~l 79 (94)
T TIGR01321 41 LGDRIRIVNELLN--GNMSQREIASKLGV---SIATITRGSNNL 79 (94)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHhCC---ChhhhhHHHhhc
Confidence 3568999998865 78999999999999 456666665544
No 486
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=62.04 E-value=19 Score=31.95 Aligned_cols=55 Identities=20% Similarity=0.220 Sum_probs=41.7
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEecCCCC
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFE 251 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~ 251 (307)
+.....-+|+|.-.|+++-.|.++ ++.++.+|-..+.+..- ...+|+....|-|+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~-dtg~v~h~r~DGfk 263 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLM-DTGQVTHLREDGFK 263 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhh-cccceeeeeccCcc
Confidence 445677899999999999999999 89999999866655443 34556665556555
No 487
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=62.00 E-value=15 Score=31.31 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
|..++..+||+.+|+ +..-++.-|+.|...|+++..+
T Consensus 32 G~~L~e~~La~~lgV---SRtpVREAL~~L~~eGLV~~~~ 68 (221)
T PRK11414 32 GARLITKNLAEQLGM---SITPVREALLRLVSVNALSVAP 68 (221)
T ss_pred CCccCHHHHHHHHCC---CchhHHHHHHHHHHCCCEEecC
Confidence 578899999999999 5678999999999999999876
No 488
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=61.63 E-value=90 Score=26.49 Aligned_cols=107 Identities=12% Similarity=0.126 Sum_probs=67.7
Q ss_pred cCCCeEEEecCCchHHHHHHHH----HCCCCeEEEecch--HHHHhchhcCCCeEEEecCCCCCC---C------C-ccE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAK----AFPNLECTDFDLP--HVVNGLESDLANLKYVGGDMFEAI---P------P-ADA 258 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~----~~p~~~~~~~Dl~--~~~~~a~~~~~rv~~~~~d~~~~~---p------~-~D~ 258 (307)
.++..|+++|.-.|..+..++. .....+++++|+. +.-..|. ..++|.|+.++-..|- + + .-+
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~-e~p~i~f~egss~dpai~eqi~~~~~~y~kI 146 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAR-EVPDILFIEGSSTDPAIAEQIRRLKNEYPKI 146 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhh-cCCCeEEEeCCCCCHHHHHHHHHHhcCCCcE
Confidence 3467899999776665554442 2233678888872 1112233 3679999999877631 1 1 244
Q ss_pred EEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCCCC
Q 037127 259 VVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKGDD 307 (307)
Q Consensus 259 i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~~~~ 307 (307)
.++--.-| +-+.+...|+-....|.. |..+++.|.++++-.+||
T Consensus 147 fvilDsdH--s~~hvLAel~~~~pllsa---G~Y~vVeDs~v~dlp~~~ 190 (237)
T COG3510 147 FVILDSDH--SMEHVLAELKLLAPLLSA---GDYLVVEDSNVNDLPGPV 190 (237)
T ss_pred EEEecCCc--hHHHHHHHHHHhhhHhhc---CceEEEecccccCCCCcc
Confidence 44444445 334455667777778887 889999999988765543
No 489
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=61.55 E-value=14 Score=28.75 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
.=-|+.|||..+++ ++.-++|..+.|...||+....
T Consensus 34 kLPSvRelA~~~~V---NpnTv~raY~eLE~eG~i~t~r 69 (125)
T COG1725 34 KLPSVRELAKDLGV---NPNTVQRAYQELEREGIVETKR 69 (125)
T ss_pred CCCcHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 45689999999999 5789999999999999999886
No 490
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=61.38 E-value=61 Score=31.43 Aligned_cols=100 Identities=17% Similarity=0.160 Sum_probs=58.0
Q ss_pred eEEEecCCchHHHHH--HHHHCCCCeEEEecc-hHHHHhchhc-----C-----------C-CeEEEecCCCCCCCCccE
Q 037127 199 SLVDVGGATGTVAKA--IAKAFPNLECTDFDL-PHVVNGLESD-----L-----------A-NLKYVGGDMFEAIPPADA 258 (307)
Q Consensus 199 ~vlDvGgG~G~~~~~--l~~~~p~~~~~~~Dl-~~~~~~a~~~-----~-----------~-rv~~~~~d~~~~~p~~D~ 258 (307)
+|.=||.|......+ |++..++.+++++|. ++.++..++. . . ++.+ ..|+.+....+|+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~-t~~~~~~i~~adv 81 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF-STDVEKHVAEADI 81 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE-EcCHHHHHhcCCE
Confidence 466778886655544 444444678999999 6667765530 0 0 1111 1112112335788
Q ss_pred EEech--hhc--------cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 259 VVLKW--ILH--------DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 259 i~~~~--vLh--------~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
+++.- .+- ..+-.-.....+.+.+.+++ |.++|++...|..
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~----~~lVv~~STvp~G 132 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKS----DKIVVEKSTVPVK 132 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCC----CcEEEEeCCCCCC
Confidence 87653 220 11112456777888888875 7888888887764
No 491
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=61.31 E-value=50 Score=30.02 Aligned_cols=92 Identities=15% Similarity=0.097 Sum_probs=53.9
Q ss_pred CCCeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHHHhchhcC-CCe-EEEecCCCC---CCCCccEEEechhhccC
Q 037127 196 GLNSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDL-ANL-KYVGGDMFE---AIPPADAVVLKWILHDW 268 (307)
Q Consensus 196 ~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~-~rv-~~~~~d~~~---~~p~~D~i~~~~vLh~~ 268 (307)
...+||=.|+| .|.++.++++....-++++.|. ++-.+.+++.. +.+ .....++.+ ....+|+++-.-
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~----- 243 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS----- 243 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC-----
Confidence 35677777776 6777888888874436888887 66666666522 211 111111111 112367664321
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 269 NDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 269 ~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.. ...++.+.+++++ +|+++++..
T Consensus 244 G~---~~~~~~~~~~l~~---~G~iv~~G~ 267 (343)
T PRK09880 244 GH---PSSINTCLEVTRA---KGVMVQVGM 267 (343)
T ss_pred CC---HHHHHHHHHHhhc---CCEEEEEcc
Confidence 11 1356777888998 899998864
No 492
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=61.25 E-value=58 Score=28.61 Aligned_cols=95 Identities=13% Similarity=0.163 Sum_probs=61.4
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecch-----HHHHhchhcCCCeEEEecCCCCCCC------CccEEEe
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDLP-----HVVNGLESDLANLKYVGGDMFEAIP------PADAVVL 261 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl~-----~~~~~a~~~~~rv~~~~~d~~~~~p------~~D~i~~ 261 (307)
++...+||-+|.++|....++..-- |+--++.++.. ..+..|+ -.++|--+.-|...|.. =.|+|+
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk-kRtNiiPIiEDArhP~KYRmlVgmVDvIF- 231 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK-KRTNIIPIIEDARHPAKYRMLVGMVDVIF- 231 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh-ccCCceeeeccCCCchheeeeeeeEEEEe-
Confidence 5678899999999999888876543 44445666652 3444444 45677777888887643 246443
Q ss_pred chhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 262 KWILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 262 ~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
+.+-+ || ++..+.-++...|++ ||.++|.
T Consensus 232 aDvaq--pd-q~RivaLNA~~FLk~---gGhfvis 260 (317)
T KOG1596|consen 232 ADVAQ--PD-QARIVALNAQYFLKN---GGHFVIS 260 (317)
T ss_pred ccCCC--ch-hhhhhhhhhhhhhcc---CCeEEEE
Confidence 33332 33 344555678888898 7877653
No 493
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=60.96 E-value=52 Score=26.54 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=30.7
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEecCCCC
Q 037127 198 NSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFE 251 (307)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~ 251 (307)
.-|+|+|=|+|..=-+|.+.+|+-+++++|..-.+--.. ..+.-.++.||+.+
T Consensus 30 G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~-~P~~~~~ilGdi~~ 82 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSS-TPPEEDLILGDIRE 82 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG----GGGEEES-HHH
T ss_pred CceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCC-CCchHheeeccHHH
Confidence 569999999999999999999999999999722111111 12233467777766
No 494
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=60.91 E-value=6.5 Score=28.67 Aligned_cols=33 Identities=12% Similarity=0.167 Sum_probs=26.0
Q ss_pred HHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcC
Q 037127 71 YRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKD 113 (307)
Q Consensus 71 ~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~ 113 (307)
.=-+..|...|+++... .|.|++|+.|+.+...
T Consensus 58 ~Wa~~~L~~aGli~~~~----------rG~~~iT~~G~~~l~~ 90 (92)
T PF14338_consen 58 RWARSYLKKAGLIERPK----------RGIWRITEKGRKALAE 90 (92)
T ss_pred HHHHHHHHHCCCccCCC----------CCceEECHhHHHHHhh
Confidence 33467889999998865 5899999999966543
No 495
>COG0640 ArsR Predicted transcriptional regulators [Transcription]
Probab=60.76 E-value=13 Score=26.58 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=44.4
Q ss_pred HHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecc
Q 037127 29 SMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTL 88 (307)
Q Consensus 29 ~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~ 88 (307)
..++....+..++..|... .+.++.+|+..+++ +...+.+.|..|...|++.....
T Consensus 19 ~~~l~~~~r~~il~~l~~~-~~~~~~~l~~~~~~---~~~~v~~hL~~L~~~glv~~~~~ 74 (110)
T COG0640 19 LKALADPTRLEILSLLAEG-GELTVGELAEALGL---SQSTVSHHLKVLREAGLVELRRE 74 (110)
T ss_pred HHHhCCHHHHHHHHHHHhc-CCccHHHHHHHHCC---ChhHHHHHHHHHHHCCCeEEEec
Confidence 3444555666777777652 47889999999998 67999999999999999999763
No 496
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=60.38 E-value=84 Score=27.16 Aligned_cols=100 Identities=14% Similarity=0.217 Sum_probs=62.1
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCC--eEEEecc-hHHHHhchh----------------------------------
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNL--ECTDFDL-PHVVNGLES---------------------------------- 237 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~--~~~~~Dl-~~~~~~a~~---------------------------------- 237 (307)
+.+.++-|==||+|+++.-+.-.++.. .+++-|+ +.+++.|++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 567899999999999998887666553 5788888 777777653
Q ss_pred -------------cCCCeEEEecCCCCCCC--------CccEEEechh---hccCCh----hHHHHHHHHHHHhccCCCC
Q 037127 238 -------------DLANLKYVGGDMFEAIP--------PADAVVLKWI---LHDWND----EECVKILKKCKEAITSNSK 289 (307)
Q Consensus 238 -------------~~~rv~~~~~d~~~~~p--------~~D~i~~~~v---Lh~~~~----~~~~~~L~~~~~~L~p~~~ 289 (307)
......+.+.|+|++.+ .+|+|+---. +-+|.. +-+.++|..++.+|++
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~--- 206 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPE--- 206 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-T---
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCC---
Confidence 01235678889998422 3688876543 345643 3467899999999965
Q ss_pred CcEEEEEe
Q 037127 290 IGKVIIID 297 (307)
Q Consensus 290 gg~lli~e 297 (307)
.+.|.|.+
T Consensus 207 ~sVV~v~~ 214 (246)
T PF11599_consen 207 RSVVAVSD 214 (246)
T ss_dssp T-EEEEEE
T ss_pred CcEEEEec
Confidence 56666644
No 497
>PRK09273 hypothetical protein; Provisional
Probab=60.12 E-value=19 Score=30.66 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=31.6
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh
Q 037127 199 SLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES 237 (307)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~ 237 (307)
...=++||||.-..-.++++|++++..+--|.....+++
T Consensus 65 d~GIliCGTGiG~siAANK~pGIraalc~d~~sA~lar~ 103 (211)
T PRK09273 65 DFVVTGCGTGQGAMLALNSFPGVVCGYCIDPTDAYLFAQ 103 (211)
T ss_pred CEEEEEcCcHHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Confidence 345579999999999999999999766666777777775
No 498
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=60.08 E-value=81 Score=27.23 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=41.8
Q ss_pred CCCeEEEecCCchHHHH--HHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCCCccEEEec
Q 037127 196 GLNSLVDVGGATGTVAK--AIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIPPADAVVLK 262 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~--~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p~~D~i~~~ 262 (307)
+..+||=||||.-..-+ .|++....++++.-++ +++.+.+. ..+++++..++.. .+.++++|+..
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~--~~~i~~~~r~~~~~dl~g~~LViaA 92 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKK--YGNLKLIKGNYDKEFIKDKHLIVIA 92 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHh--CCCEEEEeCCCChHHhCCCcEEEEC
Confidence 45689999999877653 4555544444554455 44443333 5679999888765 35567777765
No 499
>PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3.5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A ....
Probab=59.72 E-value=2.5 Score=28.97 Aligned_cols=59 Identities=22% Similarity=0.298 Sum_probs=38.8
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecCh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTN 105 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~ 105 (307)
+-.|.+.|...| +.++..||...|+.- +..-+-++|..|...|.+.++. +..-.|+++.
T Consensus 6 ee~Il~~L~~~g-~~~a~~ia~~~~L~~-~kk~VN~~LY~L~k~g~v~k~~--------~~PP~W~l~~ 64 (66)
T PF02295_consen 6 EEKILDFLKELG-GSTATAIAKALGLSV-PKKEVNRVLYRLEKQGKVCKEG--------GTPPKWSLTE 64 (66)
T ss_dssp HHHHHHHHHHHT-SSEEEHHHHHHHHTS--HHHHHHHHHHHHHTTSEEEEC--------SSSTEEEE-H
T ss_pred HHHHHHHHHhcC-CccHHHHHHHhCcch-hHHHHHHHHHHHHHCCCEeeCC--------CCCCceEecc
Confidence 444556666553 555555555555421 4688999999999999999885 2356787764
No 500
>PRK09462 fur ferric uptake regulator; Provisional
Probab=59.61 E-value=12 Score=29.98 Aligned_cols=52 Identities=17% Similarity=0.302 Sum_probs=38.4
Q ss_pred HhCCcccccccC-CCCCCHHHHHHHcCC--CCCCcccHHHHHHHHHhCCceeeec
Q 037127 36 VELSIPDIINKH-GKPTTLNDLVSALTI--NPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 36 ~~lglfd~L~~~-~~~~t~~eLA~~~g~--~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
-+.-|++.|... +++.|++||-+.+.- +..+..-+.|.|+.|...|++.+..
T Consensus 18 qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~~~ 72 (148)
T PRK09462 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (148)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 345566666542 369999999988742 1115678999999999999999875
Done!