Query 037127
Match_columns 307
No_of_seqs 151 out of 1873
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 15:01:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 3.3E-48 1.1E-52 357.1 27.8 275 14-305 7-291 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 6.3E-46 2.2E-50 343.3 27.6 289 9-305 14-306 (364)
3 3lst_A CALO1 methyltransferase 100.0 5.4E-45 1.8E-49 335.2 28.2 274 10-305 17-294 (348)
4 1fp2_A Isoflavone O-methyltran 100.0 2.6E-45 8.7E-50 337.8 25.1 292 2-304 3-295 (352)
5 3reo_A (ISO)eugenol O-methyltr 100.0 9.2E-45 3.1E-49 336.0 26.3 287 10-305 16-308 (368)
6 3gwz_A MMCR; methyltransferase 100.0 4.5E-44 1.5E-48 331.6 27.1 274 10-304 33-314 (369)
7 1zg3_A Isoflavanone 4'-O-methy 100.0 4.9E-44 1.7E-48 330.0 24.1 295 8-304 3-300 (358)
8 3i53_A O-methyltransferase; CO 100.0 4.9E-44 1.7E-48 326.6 20.2 266 17-303 7-280 (332)
9 1fp1_D Isoliquiritigenin 2'-O- 100.0 3.8E-43 1.3E-47 325.7 25.8 287 9-304 16-313 (372)
10 2ip2_A Probable phenazine-spec 100.0 1.6E-42 5.4E-47 316.7 26.6 266 14-304 7-279 (334)
11 3dp7_A SAM-dependent methyltra 100.0 3.8E-42 1.3E-46 317.9 24.8 271 8-304 8-294 (363)
12 1qzz_A RDMB, aclacinomycin-10- 100.0 3E-40 1E-44 306.1 21.3 271 12-303 13-295 (374)
13 1x19_A CRTF-related protein; m 100.0 3.6E-39 1.2E-43 297.5 26.9 262 9-303 24-301 (359)
14 1tw3_A COMT, carminomycin 4-O- 100.0 1.4E-39 4.8E-44 300.1 23.4 268 15-303 19-295 (360)
15 3mcz_A O-methyltransferase; ad 100.0 6.1E-39 2.1E-43 295.0 25.1 266 9-305 18-295 (352)
16 2r3s_A Uncharacterized protein 100.0 1.3E-38 4.5E-43 290.5 24.3 261 17-303 8-277 (335)
17 4gek_A TRNA (CMO5U34)-methyltr 99.7 4.8E-17 1.6E-21 143.1 15.6 107 194-303 68-184 (261)
18 2qm3_A Predicted methyltransfe 99.7 1.2E-15 4.1E-20 140.9 16.6 216 39-300 47-280 (373)
19 3dtn_A Putative methyltransfer 99.7 1.7E-15 6E-20 130.2 15.7 105 195-302 43-153 (234)
20 3ou2_A SAM-dependent methyltra 99.6 2.8E-14 9.5E-19 121.0 14.8 103 194-301 44-150 (218)
21 2qe6_A Uncharacterized protein 99.6 3.5E-14 1.2E-18 125.6 15.4 102 196-300 77-199 (274)
22 1vl5_A Unknown conserved prote 99.6 1.3E-14 4.4E-19 126.9 12.4 112 182-302 25-145 (260)
23 3hnr_A Probable methyltransfer 99.6 2.7E-14 9.4E-19 121.5 13.4 111 185-302 36-150 (220)
24 3ujc_A Phosphoethanolamine N-m 99.6 2.1E-14 7.1E-19 125.5 12.9 113 184-302 45-164 (266)
25 1ve3_A Hypothetical protein PH 99.6 1.4E-14 4.8E-19 123.7 10.4 100 196-300 38-145 (227)
26 1nkv_A Hypothetical protein YJ 99.5 4.1E-14 1.4E-18 123.2 13.0 112 184-303 26-146 (256)
27 3dlc_A Putative S-adenosyl-L-m 99.5 3E-14 1E-18 120.6 11.5 96 199-300 46-151 (219)
28 1xtp_A LMAJ004091AAA; SGPP, st 99.5 2.3E-14 7.8E-19 124.6 10.6 112 184-301 83-201 (254)
29 2o57_A Putative sarcosine dime 99.5 6.6E-14 2.3E-18 124.8 13.7 104 194-303 80-193 (297)
30 1pjz_A Thiopurine S-methyltran 99.5 4.4E-14 1.5E-18 119.4 11.9 102 194-300 20-143 (203)
31 3bus_A REBM, methyltransferase 99.5 8.3E-14 2.8E-18 122.5 13.9 111 184-302 51-171 (273)
32 3jwh_A HEN1; methyltransferase 99.5 7.1E-14 2.4E-18 118.8 13.0 102 194-298 27-142 (217)
33 3jwg_A HEN1, methyltransferase 99.5 5.6E-14 1.9E-18 119.6 11.9 100 195-297 28-141 (219)
34 1kpg_A CFA synthase;, cyclopro 99.5 1.1E-13 3.7E-18 122.8 13.8 113 184-302 54-173 (287)
35 3vc1_A Geranyl diphosphate 2-C 99.5 2.4E-13 8.3E-18 122.2 15.5 121 175-303 97-227 (312)
36 3dh0_A SAM dependent methyltra 99.5 7.9E-14 2.7E-18 118.5 11.7 112 184-302 27-148 (219)
37 3hem_A Cyclopropane-fatty-acyl 99.5 1.6E-13 5.5E-18 122.7 14.1 113 184-302 62-188 (302)
38 1xxl_A YCGJ protein; structura 99.5 1.2E-13 4.1E-18 119.4 12.6 110 184-302 11-129 (239)
39 3pfg_A N-methyltransferase; N, 99.5 1.7E-13 5.7E-18 120.0 13.4 102 195-301 49-155 (263)
40 2xvm_A Tellurite resistance pr 99.5 1.6E-13 5.5E-18 114.5 12.6 111 185-302 23-141 (199)
41 3ggd_A SAM-dependent methyltra 99.5 9.1E-14 3.1E-18 120.3 11.3 103 194-301 54-167 (245)
42 3gu3_A Methyltransferase; alph 99.5 1E-13 3.6E-18 123.0 11.8 101 194-299 20-128 (284)
43 2fk8_A Methoxy mycolic acid sy 99.5 2.5E-13 8.5E-18 122.3 14.3 113 184-302 80-199 (318)
44 4hg2_A Methyltransferase type 99.5 9.4E-14 3.2E-18 121.7 10.9 98 195-301 38-139 (257)
45 3dli_A Methyltransferase; PSI- 99.5 2E-13 6.8E-18 118.0 12.5 98 194-299 39-142 (240)
46 3f4k_A Putative methyltransfer 99.5 2.6E-13 9E-18 118.1 13.3 103 194-303 44-156 (257)
47 3mgg_A Methyltransferase; NYSG 99.5 1.7E-13 5.7E-18 120.8 12.0 101 194-299 35-144 (276)
48 3h2b_A SAM-dependent methyltra 99.5 7.7E-14 2.6E-18 117.3 9.4 100 197-301 42-145 (203)
49 3g5t_A Trans-aconitate 3-methy 99.5 2.7E-13 9.2E-18 121.1 13.1 99 195-299 35-151 (299)
50 2p35_A Trans-aconitate 2-methy 99.5 1.9E-13 6.4E-18 119.1 11.4 109 184-299 23-134 (259)
51 3kkz_A Uncharacterized protein 99.5 2.1E-13 7.1E-18 119.7 11.7 103 194-303 44-156 (267)
52 3g07_A 7SK snRNA methylphospha 99.5 9.9E-14 3.4E-18 123.8 9.5 100 195-297 45-220 (292)
53 3g5l_A Putative S-adenosylmeth 99.5 4E-13 1.4E-17 116.9 12.5 105 185-297 35-145 (253)
54 3lcc_A Putative methyl chlorid 99.5 2.1E-13 7E-18 117.4 10.4 100 197-301 67-175 (235)
55 2p7i_A Hypothetical protein; p 99.5 2.4E-13 8.1E-18 117.3 10.7 98 196-300 42-144 (250)
56 3ccf_A Cyclopropane-fatty-acyl 99.5 2.2E-13 7.4E-18 120.5 10.6 107 184-299 47-156 (279)
57 2ex4_A Adrenal gland protein A 99.5 1.8E-13 6.2E-18 118.3 9.6 102 196-301 79-189 (241)
58 3bkw_A MLL3908 protein, S-aden 99.5 4.6E-13 1.6E-17 115.4 12.1 106 185-298 34-145 (243)
59 3ocj_A Putative exported prote 99.4 1.2E-13 4.2E-18 123.8 8.3 106 194-302 116-232 (305)
60 2gb4_A Thiopurine S-methyltran 99.4 4.5E-13 1.5E-17 117.0 11.6 101 195-300 67-194 (252)
61 3bxo_A N,N-dimethyltransferase 99.4 7.2E-13 2.5E-17 113.9 12.6 103 195-302 39-146 (239)
62 3m70_A Tellurite resistance pr 99.4 5.7E-13 1.9E-17 118.1 12.3 112 184-302 110-228 (286)
63 3ofk_A Nodulation protein S; N 99.4 6E-13 2E-17 112.9 11.3 100 194-298 49-155 (216)
64 3l8d_A Methyltransferase; stru 99.4 6.9E-13 2.4E-17 114.3 11.6 99 195-300 52-156 (242)
65 3i9f_A Putative type 11 methyl 99.4 2.1E-13 7.2E-18 111.3 7.7 100 194-302 15-117 (170)
66 3g2m_A PCZA361.24; SAM-depende 99.4 6.7E-13 2.3E-17 118.5 11.4 110 183-300 72-193 (299)
67 3ege_A Putative methyltransfer 99.4 1.2E-12 4.1E-17 114.6 12.8 107 184-301 24-134 (261)
68 2p8j_A S-adenosylmethionine-de 99.4 9.2E-13 3.1E-17 110.9 10.7 104 195-302 22-133 (209)
69 2yqz_A Hypothetical protein TT 99.4 2E-12 7E-17 112.6 13.1 96 194-296 37-140 (263)
70 3e23_A Uncharacterized protein 99.4 8E-13 2.7E-17 111.7 10.0 101 194-300 41-144 (211)
71 4htf_A S-adenosylmethionine-de 99.4 8E-13 2.7E-17 117.1 10.4 97 196-299 68-175 (285)
72 3sm3_A SAM-dependent methyltra 99.4 2E-12 6.8E-17 110.6 12.3 101 195-300 29-144 (235)
73 3uwp_A Histone-lysine N-methyl 99.4 1.2E-12 4.2E-17 120.4 11.5 113 184-304 163-295 (438)
74 4fsd_A Arsenic methyltransfera 99.4 1.5E-12 5.3E-17 120.4 12.2 103 195-302 82-208 (383)
75 3e05_A Precorrin-6Y C5,15-meth 99.4 5.1E-12 1.7E-16 106.3 14.1 105 185-299 31-144 (204)
76 3cgg_A SAM-dependent methyltra 99.4 2.3E-12 7.7E-17 106.8 11.7 99 195-298 45-148 (195)
77 3bkx_A SAM-dependent methyltra 99.4 2.5E-12 8.5E-17 113.1 12.4 113 184-303 33-165 (275)
78 1wzn_A SAM-dependent methyltra 99.4 5.4E-12 1.8E-16 109.5 14.0 97 195-296 40-144 (252)
79 3hm2_A Precorrin-6Y C5,15-meth 99.4 2.1E-12 7.1E-17 105.9 10.3 103 186-300 17-130 (178)
80 3thr_A Glycine N-methyltransfe 99.4 9.3E-13 3.2E-17 117.0 8.6 101 194-299 55-177 (293)
81 2pxx_A Uncharacterized protein 99.4 2.6E-12 8.7E-17 108.4 10.9 102 195-300 41-162 (215)
82 1y8c_A S-adenosylmethionine-de 99.4 3.6E-12 1.2E-16 109.8 11.2 95 196-295 37-140 (246)
83 1af7_A Chemotaxis receptor met 99.4 1.9E-12 6.4E-17 114.3 9.5 97 196-295 105-250 (274)
84 1ri5_A MRNA capping enzyme; me 99.3 7.3E-12 2.5E-16 111.1 12.8 101 195-299 63-176 (298)
85 3iv6_A Putative Zn-dependent a 99.3 6.7E-12 2.3E-16 109.9 11.6 107 184-298 35-149 (261)
86 2gs9_A Hypothetical protein TT 99.3 5.5E-12 1.9E-16 106.5 10.7 95 196-300 36-135 (211)
87 3d2l_A SAM-dependent methyltra 99.3 7E-12 2.4E-16 107.9 10.8 95 195-295 32-135 (243)
88 1dus_A MJ0882; hypothetical pr 99.3 2.3E-11 7.8E-16 100.6 12.9 108 184-299 42-159 (194)
89 3htx_A HEN1; HEN1, small RNA m 99.3 1.2E-11 4E-16 122.0 12.5 101 195-299 720-836 (950)
90 3bgv_A MRNA CAP guanine-N7 met 99.3 9.3E-12 3.2E-16 111.8 11.0 100 195-298 33-156 (313)
91 2aot_A HMT, histamine N-methyl 99.3 1.8E-11 6.1E-16 108.9 12.7 99 196-299 52-174 (292)
92 3cc8_A Putative methyltransfer 99.3 9.5E-12 3.2E-16 105.9 10.4 105 183-299 22-132 (230)
93 4dcm_A Ribosomal RNA large sub 99.3 1.2E-11 4.3E-16 113.9 11.8 109 185-298 213-335 (375)
94 2pjd_A Ribosomal RNA small sub 99.3 5.3E-12 1.8E-16 115.1 9.1 111 184-299 186-305 (343)
95 3mti_A RRNA methylase; SAM-dep 99.3 1.5E-11 5.2E-16 101.6 10.3 103 194-301 20-139 (185)
96 3fpf_A Mtnas, putative unchara 99.3 2E-11 6.8E-16 108.2 11.5 97 194-298 120-223 (298)
97 3tfw_A Putative O-methyltransf 99.3 2.1E-11 7E-16 106.1 11.5 100 194-301 61-174 (248)
98 2vdw_A Vaccinia virus capping 99.3 2.3E-11 7.8E-16 109.0 11.9 99 196-298 48-170 (302)
99 2kw5_A SLR1183 protein; struct 99.3 2.8E-11 9.5E-16 101.4 11.7 96 199-301 32-135 (202)
100 3e8s_A Putative SAM dependent 99.3 1.8E-11 6.2E-16 103.9 10.4 105 185-300 43-155 (227)
101 3orh_A Guanidinoacetate N-meth 99.3 3.8E-12 1.3E-16 110.0 6.2 98 195-298 59-171 (236)
102 1yb2_A Hypothetical protein TA 99.3 1.7E-11 5.7E-16 108.3 10.4 104 185-300 101-214 (275)
103 3mb5_A SAM-dependent methyltra 99.3 1E-11 3.5E-16 108.0 8.7 105 184-300 83-197 (255)
104 3giw_A Protein of unknown func 99.3 9.5E-11 3.3E-15 102.7 14.3 103 196-301 78-204 (277)
105 1zx0_A Guanidinoacetate N-meth 99.2 9.2E-12 3.1E-16 107.3 7.4 101 195-299 59-172 (236)
106 1u2z_A Histone-lysine N-methyl 99.2 4.6E-11 1.6E-15 111.5 12.4 112 184-303 232-365 (433)
107 1yzh_A TRNA (guanine-N(7)-)-me 99.2 5.6E-11 1.9E-15 100.7 11.9 98 196-297 41-156 (214)
108 1vlm_A SAM-dependent methyltra 99.2 3.1E-11 1.1E-15 102.7 10.3 90 197-299 48-141 (219)
109 3b3j_A Histone-arginine methyl 99.2 2.2E-11 7.7E-16 115.7 10.4 107 183-295 147-261 (480)
110 3njr_A Precorrin-6Y methylase; 99.2 8.3E-11 2.8E-15 99.2 12.7 100 186-299 47-156 (204)
111 2y1w_A Histone-arginine methyl 99.2 2.5E-11 8.4E-16 110.9 10.0 107 184-296 40-154 (348)
112 3grz_A L11 mtase, ribosomal pr 99.2 2.3E-11 7.9E-16 102.3 9.0 97 195-300 59-162 (205)
113 2b3t_A Protein methyltransfera 99.2 7.3E-11 2.5E-15 104.1 12.6 99 195-296 108-237 (276)
114 1nt2_A Fibrillarin-like PRE-rR 99.2 6.8E-11 2.3E-15 100.3 11.7 96 194-296 55-160 (210)
115 3q87_B N6 adenine specific DNA 99.2 3.7E-11 1.3E-15 98.3 9.7 95 195-300 22-126 (170)
116 1fbn_A MJ fibrillarin homologu 99.2 6.7E-11 2.3E-15 101.5 11.6 95 194-296 72-177 (230)
117 3mq2_A 16S rRNA methyltransfer 99.2 2.2E-11 7.5E-16 103.4 8.3 98 194-296 25-139 (218)
118 2fca_A TRNA (guanine-N(7)-)-me 99.2 5.9E-11 2E-15 100.8 10.8 98 196-297 38-153 (213)
119 3dxy_A TRNA (guanine-N(7)-)-me 99.2 2.2E-11 7.5E-16 103.9 8.0 98 196-297 34-150 (218)
120 3eey_A Putative rRNA methylase 99.2 4.4E-11 1.5E-15 99.8 9.7 104 194-300 20-142 (197)
121 1o9g_A RRNA methyltransferase; 99.2 4.7E-11 1.6E-15 103.7 10.1 102 196-300 51-217 (250)
122 4dzr_A Protein-(glutamine-N5) 99.2 4.4E-12 1.5E-16 106.8 3.1 101 195-298 29-165 (215)
123 3ntv_A MW1564 protein; rossman 99.2 3E-11 1E-15 103.9 8.3 99 194-300 69-179 (232)
124 2avn_A Ubiquinone/menaquinone 99.2 6.5E-11 2.2E-15 103.4 10.5 96 196-299 54-154 (260)
125 3lbf_A Protein-L-isoaspartate 99.2 9.5E-11 3.2E-15 98.8 10.9 98 186-298 69-175 (210)
126 3p2e_A 16S rRNA methylase; met 99.2 3.9E-11 1.3E-15 102.9 8.6 99 195-297 23-139 (225)
127 1jsx_A Glucose-inhibited divis 99.2 6.3E-11 2.1E-15 99.6 9.5 92 197-297 66-165 (207)
128 3fzg_A 16S rRNA methylase; met 99.2 1.2E-11 4E-16 102.3 4.7 97 194-297 47-152 (200)
129 2yxe_A Protein-L-isoaspartate 99.2 1E-10 3.4E-15 99.0 10.7 101 185-298 68-178 (215)
130 2i62_A Nicotinamide N-methyltr 99.2 1.5E-11 5.1E-16 107.2 5.2 100 195-298 55-199 (265)
131 3u81_A Catechol O-methyltransf 99.2 3.4E-11 1.2E-15 102.6 7.2 101 195-301 57-174 (221)
132 2g72_A Phenylethanolamine N-me 99.2 3.3E-11 1.1E-15 106.9 7.3 99 196-298 71-216 (289)
133 3p9n_A Possible methyltransfer 99.2 2.1E-10 7.2E-15 95.2 11.6 101 195-300 43-156 (189)
134 3duw_A OMT, O-methyltransferas 99.2 5.4E-11 1.9E-15 101.3 8.0 100 194-301 56-171 (223)
135 1nv8_A HEMK protein; class I a 99.2 1.5E-10 5.1E-15 102.8 11.1 95 196-295 123-247 (284)
136 3gjy_A Spermidine synthase; AP 99.2 1.2E-10 4.2E-15 104.3 10.4 99 197-298 90-201 (317)
137 3q7e_A Protein arginine N-meth 99.2 1E-10 3.4E-15 106.9 9.9 97 194-294 64-170 (349)
138 2gpy_A O-methyltransferase; st 99.2 1.4E-10 4.7E-15 99.6 10.2 99 194-300 52-163 (233)
139 2a14_A Indolethylamine N-methy 99.1 3.5E-11 1.2E-15 105.5 6.3 101 195-299 54-199 (263)
140 2ozv_A Hypothetical protein AT 99.1 1.7E-10 5.8E-15 101.0 10.7 101 194-297 34-170 (260)
141 1xdz_A Methyltransferase GIDB; 99.1 6.2E-11 2.1E-15 102.4 7.7 94 195-297 69-174 (240)
142 2yxd_A Probable cobalt-precorr 99.1 1.3E-10 4.5E-15 95.1 9.3 99 186-299 27-133 (183)
143 2bm8_A Cephalosporin hydroxyla 99.1 1.3E-10 4.5E-15 100.3 9.5 95 196-298 81-188 (236)
144 1jg1_A PIMT;, protein-L-isoasp 99.1 1.5E-10 5.1E-15 99.6 9.7 101 184-298 81-190 (235)
145 1l3i_A Precorrin-6Y methyltran 99.1 1.5E-10 5E-15 95.5 9.2 96 194-299 31-136 (192)
146 3ckk_A TRNA (guanine-N(7)-)-me 99.1 1.7E-10 5.8E-15 99.6 9.7 99 195-297 45-168 (235)
147 3tr6_A O-methyltransferase; ce 99.1 1E-10 3.5E-15 99.7 8.2 99 195-301 63-178 (225)
148 1vbf_A 231AA long hypothetical 99.1 2.8E-10 9.7E-15 97.3 11.1 100 184-298 60-166 (231)
149 2zfu_A Nucleomethylin, cerebra 99.1 1.2E-10 4.2E-15 98.4 8.5 86 195-300 66-154 (215)
150 4e2x_A TCAB9; kijanose, tetron 99.1 2.2E-11 7.5E-16 113.7 4.2 106 183-299 96-210 (416)
151 3evz_A Methyltransferase; NYSG 99.1 2.1E-10 7E-15 98.1 9.9 101 194-298 53-180 (230)
152 2ipx_A RRNA 2'-O-methyltransfe 99.1 2.5E-10 8.7E-15 97.9 10.3 95 194-295 75-180 (233)
153 2fyt_A Protein arginine N-meth 99.1 5.2E-10 1.8E-14 101.8 12.9 105 184-294 54-168 (340)
154 3dmg_A Probable ribosomal RNA 99.1 3.5E-10 1.2E-14 104.4 11.9 97 196-297 233-340 (381)
155 3r0q_C Probable protein argini 99.1 1.7E-10 5.7E-15 106.5 9.5 102 194-299 61-171 (376)
156 3g89_A Ribosomal RNA small sub 99.1 1.2E-10 4.1E-15 101.4 7.9 95 195-298 79-185 (249)
157 3kr9_A SAM-dependent methyltra 99.1 2.6E-10 9E-15 97.3 9.8 94 195-295 14-117 (225)
158 2pwy_A TRNA (adenine-N(1)-)-me 99.1 3.1E-10 1.1E-14 98.6 10.3 105 184-300 86-201 (258)
159 3adn_A Spermidine synthase; am 99.1 1.8E-10 6.1E-15 102.7 8.6 100 195-297 82-198 (294)
160 3dr5_A Putative O-methyltransf 99.1 2.9E-10 9.8E-15 97.2 9.6 95 198-300 58-166 (221)
161 1g8a_A Fibrillarin-like PRE-rR 99.1 4.8E-10 1.6E-14 95.7 10.9 96 194-296 71-177 (227)
162 3bwc_A Spermidine synthase; SA 99.1 1.8E-10 6.2E-15 103.2 8.5 100 195-297 94-210 (304)
163 3r3h_A O-methyltransferase, SA 99.1 1E-10 3.4E-15 101.4 6.7 100 195-302 59-175 (242)
164 2vdv_E TRNA (guanine-N(7)-)-me 99.1 1.6E-10 5.5E-15 100.2 7.8 94 195-296 48-172 (246)
165 3c3p_A Methyltransferase; NP_9 99.1 1.5E-10 5E-15 97.8 7.2 98 195-300 55-163 (210)
166 1dl5_A Protein-L-isoaspartate 99.1 4.4E-10 1.5E-14 101.2 10.8 101 185-298 66-176 (317)
167 1g6q_1 HnRNP arginine N-methyl 99.1 4.1E-10 1.4E-14 102.0 10.5 97 194-294 36-142 (328)
168 1p91_A Ribosomal RNA large sub 99.1 4.5E-10 1.6E-14 98.3 10.4 94 195-300 84-181 (269)
169 3lpm_A Putative methyltransfer 99.1 4.9E-10 1.7E-14 97.9 10.4 99 194-296 46-175 (259)
170 1o54_A SAM-dependent O-methylt 99.1 4.4E-10 1.5E-14 99.1 10.1 104 184-299 102-215 (277)
171 2hnk_A SAM-dependent O-methylt 99.1 4.1E-10 1.4E-14 97.1 9.8 100 194-301 58-185 (239)
172 4df3_A Fibrillarin-like rRNA/T 99.1 1.2E-09 4E-14 93.9 12.2 97 194-297 75-182 (233)
173 1ej0_A FTSJ; methyltransferase 99.1 5.9E-10 2E-14 90.4 9.8 99 194-300 20-139 (180)
174 1ws6_A Methyltransferase; stru 99.1 1.9E-10 6.6E-15 93.2 6.9 95 196-299 41-149 (171)
175 2plw_A Ribosomal RNA methyltra 99.1 1.3E-09 4.5E-14 91.0 11.8 103 186-297 13-154 (201)
176 3m33_A Uncharacterized protein 99.0 2.1E-10 7.3E-15 98.0 6.5 87 195-294 47-139 (226)
177 2esr_A Methyltransferase; stru 99.0 3.2E-10 1.1E-14 92.9 7.1 98 195-299 30-140 (177)
178 1sui_A Caffeoyl-COA O-methyltr 99.0 4.8E-10 1.6E-14 97.4 8.6 98 195-300 78-193 (247)
179 2fhp_A Methylase, putative; al 99.0 5.2E-10 1.8E-14 92.1 8.3 98 195-299 43-156 (187)
180 2nxc_A L11 mtase, ribosomal pr 99.0 4.1E-10 1.4E-14 98.2 7.7 96 195-300 119-221 (254)
181 2avd_A Catechol-O-methyltransf 99.0 5.9E-10 2E-14 95.2 8.3 100 194-301 67-183 (229)
182 2frn_A Hypothetical protein PH 99.0 7.4E-10 2.5E-14 97.9 9.1 96 195-300 124-228 (278)
183 1i9g_A Hypothetical protein RV 99.0 1.3E-09 4.5E-14 95.9 10.7 104 184-299 89-205 (280)
184 3lec_A NADB-rossmann superfami 99.0 1.2E-09 4.1E-14 93.5 9.6 95 195-296 20-124 (230)
185 2yvl_A TRMI protein, hypotheti 99.0 4E-09 1.4E-13 90.9 13.1 101 185-299 82-192 (248)
186 2pbf_A Protein-L-isoaspartate 99.0 1.9E-09 6.4E-14 91.9 10.7 94 194-298 78-194 (227)
187 2h00_A Methyltransferase 10 do 99.0 5.3E-11 1.8E-15 103.6 0.8 99 196-297 65-192 (254)
188 2ift_A Putative methylase HI07 99.0 5.1E-10 1.7E-14 94.1 6.8 97 196-299 53-165 (201)
189 3gnl_A Uncharacterized protein 99.0 1.4E-09 4.7E-14 93.9 9.6 95 195-296 20-124 (244)
190 3c3y_A Pfomt, O-methyltransfer 99.0 9.7E-10 3.3E-14 94.8 8.5 97 195-299 69-183 (237)
191 1iy9_A Spermidine synthase; ro 99.0 6.9E-10 2.3E-14 98.0 7.4 98 196-296 75-188 (275)
192 3lcv_B Sisomicin-gentamicin re 99.0 6.1E-10 2.1E-14 96.2 6.8 100 195-298 131-237 (281)
193 2i7c_A Spermidine synthase; tr 99.0 8.7E-10 3E-14 97.7 8.0 100 195-297 77-192 (283)
194 1r18_A Protein-L-isoaspartate( 99.0 9.5E-10 3.3E-14 93.9 7.9 93 194-297 82-194 (227)
195 3tma_A Methyltransferase; thum 99.0 2.7E-09 9.1E-14 97.5 11.4 110 184-298 193-318 (354)
196 3bzb_A Uncharacterized protein 99.0 3.9E-09 1.3E-13 93.3 12.1 98 195-296 78-204 (281)
197 2b2c_A Spermidine synthase; be 99.0 8.1E-10 2.8E-14 99.3 7.4 100 195-297 107-222 (314)
198 3cbg_A O-methyltransferase; cy 99.0 7.3E-10 2.5E-14 95.2 6.7 99 195-301 71-186 (232)
199 3id6_C Fibrillarin-like rRNA/T 99.0 5.6E-09 1.9E-13 89.7 12.0 97 194-297 74-181 (232)
200 3sso_A Methyltransferase; macr 99.0 5.5E-10 1.9E-14 102.6 5.9 95 195-299 215-326 (419)
201 1uir_A Polyamine aminopropyltr 99.0 1E-09 3.5E-14 98.8 7.6 100 195-297 76-195 (314)
202 1i1n_A Protein-L-isoaspartate 99.0 3.6E-09 1.2E-13 90.1 10.6 94 194-298 75-183 (226)
203 2pt6_A Spermidine synthase; tr 99.0 1.1E-09 3.6E-14 98.9 7.7 99 195-296 115-229 (321)
204 1mjf_A Spermidine synthase; sp 98.9 9.8E-10 3.4E-14 97.3 7.1 98 195-296 74-192 (281)
205 1xj5_A Spermidine synthase 1; 98.9 1.2E-09 4E-14 99.1 7.6 99 195-296 119-234 (334)
206 3a27_A TYW2, uncharacterized p 98.9 1.5E-09 5.2E-14 95.6 7.9 100 194-302 117-224 (272)
207 4azs_A Methyltransferase WBDD; 98.9 7.2E-10 2.5E-14 107.6 6.3 104 194-302 64-178 (569)
208 2o07_A Spermidine synthase; st 98.9 9.9E-10 3.4E-14 98.4 6.6 100 195-297 94-209 (304)
209 3dou_A Ribosomal RNA large sub 98.9 2.4E-09 8.4E-14 89.3 8.5 104 184-298 14-140 (191)
210 2fpo_A Methylase YHHF; structu 98.9 2.8E-09 9.7E-14 89.5 8.8 97 196-299 54-162 (202)
211 2b25_A Hypothetical protein; s 98.9 3.6E-09 1.2E-13 95.9 9.8 104 184-299 95-221 (336)
212 1ixk_A Methyltransferase; open 98.9 5.3E-09 1.8E-13 94.1 10.7 103 194-299 116-248 (315)
213 2oxt_A Nucleoside-2'-O-methylt 98.9 2.5E-09 8.7E-14 93.8 8.4 98 194-298 72-186 (265)
214 4hc4_A Protein arginine N-meth 98.9 3.7E-09 1.3E-13 97.0 9.7 95 196-294 83-186 (376)
215 1zq9_A Probable dimethyladenos 98.9 1.9E-09 6.3E-14 95.7 7.4 91 183-278 17-115 (285)
216 2nyu_A Putative ribosomal RNA 98.9 3.8E-09 1.3E-13 87.7 8.7 97 194-298 20-146 (196)
217 2wa2_A Non-structural protein 98.9 2.3E-09 7.9E-14 94.6 7.7 97 194-297 80-193 (276)
218 1inl_A Spermidine synthase; be 98.9 1.4E-09 4.9E-14 96.9 6.4 98 196-296 90-204 (296)
219 3frh_A 16S rRNA methylase; met 98.9 5.5E-09 1.9E-13 89.4 8.8 96 195-297 104-206 (253)
220 1ne2_A Hypothetical protein TA 98.9 7.1E-09 2.4E-13 86.6 9.2 89 195-284 50-139 (200)
221 3gdh_A Trimethylguanosine synt 98.9 1.3E-10 4.6E-15 100.0 -1.6 90 196-292 78-176 (241)
222 3ajd_A Putative methyltransfer 98.9 6.6E-09 2.3E-13 91.5 9.1 104 194-300 81-214 (274)
223 3hp7_A Hemolysin, putative; st 98.9 5.4E-09 1.9E-13 92.6 8.3 102 185-296 75-184 (291)
224 2p41_A Type II methyltransfera 98.8 3.5E-09 1.2E-13 94.8 6.6 96 194-295 80-189 (305)
225 2cmg_A Spermidine synthase; tr 98.8 7.1E-09 2.4E-13 90.8 8.3 90 195-296 71-170 (262)
226 2ld4_A Anamorsin; methyltransf 98.8 4.4E-09 1.5E-13 86.0 6.2 87 194-301 10-105 (176)
227 2yxl_A PH0851 protein, 450AA l 98.8 2.8E-08 9.6E-13 93.7 11.5 105 194-301 257-393 (450)
228 3opn_A Putative hemolysin; str 98.8 1.4E-08 4.7E-13 87.4 8.4 99 186-296 28-136 (232)
229 2f8l_A Hypothetical protein LM 98.8 1.1E-08 3.8E-13 93.1 8.0 100 196-298 130-257 (344)
230 2h1r_A Dimethyladenosine trans 98.8 1.6E-08 5.5E-13 90.3 8.1 89 184-277 32-127 (299)
231 3k6r_A Putative transferase PH 98.7 2.4E-08 8.3E-13 87.9 8.1 99 194-302 123-230 (278)
232 1qam_A ERMC' methyltransferase 98.7 4.9E-08 1.7E-12 84.5 9.3 84 183-270 19-108 (244)
233 2igt_A SAM dependent methyltra 98.7 2.6E-08 9E-13 90.1 7.8 99 196-299 153-274 (332)
234 2ih2_A Modification methylase 98.7 4.6E-08 1.6E-12 91.0 9.6 108 183-299 28-166 (421)
235 1sqg_A SUN protein, FMU protei 98.7 3.7E-08 1.3E-12 92.3 8.0 104 194-300 244-377 (429)
236 1wy7_A Hypothetical protein PH 98.7 9.1E-08 3.1E-12 80.1 9.5 89 195-284 48-141 (207)
237 2frx_A Hypothetical protein YE 98.6 1.9E-07 6.4E-12 88.6 11.8 102 196-300 117-249 (479)
238 3m6w_A RRNA methylase; rRNA me 98.6 7.1E-08 2.4E-12 90.9 7.9 102 194-299 99-231 (464)
239 2yx1_A Hypothetical protein MJ 98.6 1.1E-07 3.9E-12 86.1 8.5 94 195-300 194-294 (336)
240 3tm4_A TRNA (guanine N2-)-meth 98.6 7.8E-08 2.7E-12 88.4 7.3 90 195-284 216-321 (373)
241 1yub_A Ermam, rRNA methyltrans 98.6 1.8E-08 6E-13 87.3 2.6 108 183-297 18-145 (245)
242 3gru_A Dimethyladenosine trans 98.5 2.5E-07 8.5E-12 82.2 9.1 84 183-271 39-129 (295)
243 2as0_A Hypothetical protein PH 98.5 8.3E-08 2.8E-12 88.9 6.2 100 196-299 217-337 (396)
244 3k0b_A Predicted N6-adenine-sp 98.5 4.4E-07 1.5E-11 83.9 10.3 113 183-298 190-351 (393)
245 1wxx_A TT1595, hypothetical pr 98.5 1.3E-07 4.4E-12 87.2 6.4 99 196-299 209-327 (382)
246 3ldg_A Putative uncharacterize 98.5 1.3E-06 4.5E-11 80.5 12.8 113 183-298 183-344 (384)
247 2okc_A Type I restriction enzy 98.5 2.2E-07 7.6E-12 87.4 7.6 101 195-298 170-308 (445)
248 2b78_A Hypothetical protein SM 98.5 1.6E-07 5.5E-12 86.7 6.2 99 195-297 211-331 (385)
249 3c0k_A UPF0064 protein YCCW; P 98.4 1.8E-07 6.3E-12 86.6 6.3 100 195-298 219-340 (396)
250 1m6y_A S-adenosyl-methyltransf 98.4 4E-07 1.4E-11 81.2 7.5 77 184-262 16-105 (301)
251 3ldu_A Putative methylase; str 98.4 9.7E-07 3.3E-11 81.4 10.2 113 183-298 184-345 (385)
252 3m4x_A NOL1/NOP2/SUN family pr 98.4 3.5E-07 1.2E-11 86.0 7.1 104 194-300 103-237 (456)
253 1uwv_A 23S rRNA (uracil-5-)-me 98.4 1.4E-06 4.7E-11 81.7 11.2 67 194-262 284-363 (433)
254 3ftd_A Dimethyladenosine trans 98.4 7.3E-07 2.5E-11 77.3 8.6 93 184-283 21-118 (249)
255 4dmg_A Putative uncharacterize 98.4 6.5E-07 2.2E-11 82.8 8.4 100 196-300 214-329 (393)
256 4gqb_A Protein arginine N-meth 98.4 4E-07 1.4E-11 88.5 7.2 128 157-294 323-464 (637)
257 2qfm_A Spermine synthase; sper 98.4 6.7E-07 2.3E-11 81.1 7.9 98 195-296 187-313 (364)
258 3fut_A Dimethyladenosine trans 98.4 1.1E-06 3.8E-11 77.1 9.0 90 184-279 37-133 (271)
259 2xyq_A Putative 2'-O-methyl tr 98.4 8E-07 2.7E-11 78.7 8.0 93 194-298 61-172 (290)
260 3o4f_A Spermidine synthase; am 98.3 1.7E-06 5.8E-11 76.4 9.0 100 195-297 82-198 (294)
261 2jjq_A Uncharacterized RNA met 98.3 2.4E-06 8.2E-11 79.8 10.5 91 195-296 289-386 (425)
262 3v97_A Ribosomal RNA large sub 98.3 2.5E-06 8.6E-11 84.6 9.8 99 196-298 539-658 (703)
263 3tqs_A Ribosomal RNA small sub 98.3 1.4E-06 4.9E-11 75.7 6.9 64 184-251 19-86 (255)
264 3uzu_A Ribosomal RNA small sub 98.2 7.6E-07 2.6E-11 78.5 4.4 69 184-254 32-105 (279)
265 3ua3_A Protein arginine N-meth 98.1 2.5E-06 8.6E-11 83.1 6.5 126 158-294 379-531 (745)
266 1qyr_A KSGA, high level kasuga 98.1 2.1E-06 7E-11 74.6 5.2 90 184-277 11-111 (252)
267 2r6z_A UPF0341 protein in RSP 98.1 5E-06 1.7E-10 72.4 7.5 70 194-265 81-171 (258)
268 3bt7_A TRNA (uracil-5-)-methyl 98.1 3.3E-06 1.1E-10 77.4 5.7 89 197-298 214-327 (369)
269 2ar0_A M.ecoki, type I restric 98.0 9.5E-06 3.3E-10 78.0 8.5 111 183-298 158-313 (541)
270 3v97_A Ribosomal RNA large sub 98.0 2E-05 6.7E-10 78.2 10.8 113 184-298 180-348 (703)
271 1rjd_A PPM1P, carboxy methyl t 98.0 0.00012 4E-09 66.1 14.4 104 195-302 96-237 (334)
272 2dul_A N(2),N(2)-dimethylguano 98.0 1.5E-05 5.2E-10 73.2 8.4 92 196-296 47-163 (378)
273 3evf_A RNA-directed RNA polyme 98.0 1.8E-05 6.3E-10 68.7 7.8 99 194-295 72-182 (277)
274 3b5i_A S-adenosyl-L-methionine 97.9 5.8E-05 2E-09 69.0 11.3 103 197-302 53-230 (374)
275 3axs_A Probable N(2),N(2)-dime 97.9 1.3E-05 4.4E-10 73.9 5.6 93 196-297 52-158 (392)
276 2b9e_A NOL1/NOP2/SUN domain fa 97.9 4.9E-05 1.7E-09 67.9 9.2 68 194-261 100-180 (309)
277 3gcz_A Polyprotein; flavivirus 97.8 1.5E-05 5.2E-10 69.3 4.8 107 184-295 80-199 (282)
278 2k4m_A TR8_protein, UPF0146 pr 97.8 5.5E-05 1.9E-09 59.3 7.0 74 196-285 35-114 (153)
279 4auk_A Ribosomal RNA large sub 97.7 0.00018 6.3E-09 65.2 10.3 95 194-297 209-306 (375)
280 1wg8_A Predicted S-adenosylmet 97.7 0.00013 4.3E-09 63.8 8.3 75 183-261 11-95 (285)
281 3khk_A Type I restriction-modi 97.6 6.2E-05 2.1E-09 72.4 6.3 99 197-298 245-396 (544)
282 3c6k_A Spermine synthase; sper 97.6 0.00013 4.3E-09 66.5 7.3 98 195-296 204-330 (381)
283 2efj_A 3,7-dimethylxanthine me 97.6 0.00025 8.5E-09 64.9 9.2 103 197-302 53-230 (384)
284 2oyr_A UPF0341 protein YHIQ; a 97.6 0.00012 4.1E-09 63.6 6.5 67 198-266 90-175 (258)
285 3ll7_A Putative methyltransfer 97.5 5.2E-05 1.8E-09 70.1 4.3 65 196-262 93-170 (410)
286 3s1s_A Restriction endonucleas 97.5 0.00042 1.4E-08 68.7 10.5 100 196-298 321-466 (878)
287 1m6e_X S-adenosyl-L-methionnin 97.4 0.00053 1.8E-08 62.2 9.0 105 195-302 50-214 (359)
288 3eld_A Methyltransferase; flav 97.4 0.00021 7.3E-09 62.5 5.9 100 193-295 78-189 (300)
289 3lkd_A Type I restriction-modi 97.4 0.00063 2.2E-08 65.3 9.4 100 196-298 221-359 (542)
290 3cvo_A Methyltransferase-like 97.3 0.0017 5.8E-08 54.1 10.7 93 194-300 28-156 (202)
291 2uyo_A Hypothetical protein ML 97.3 0.0036 1.2E-07 55.7 12.8 103 195-302 101-222 (310)
292 2qy6_A UPF0209 protein YFCK; s 97.3 0.00022 7.4E-09 61.9 4.5 93 196-295 60-211 (257)
293 2heo_A Z-DNA binding protein 1 97.1 0.00021 7.1E-09 48.5 2.6 55 37-104 12-66 (67)
294 3b73_A PHIH1 repressor-like pr 97.1 0.00025 8.7E-09 53.2 3.0 63 37-113 15-79 (111)
295 3p8z_A Mtase, non-structural p 97.0 0.00076 2.6E-08 57.0 5.2 101 184-286 68-179 (267)
296 1y0u_A Arsenical resistance op 97.0 0.00047 1.6E-08 50.2 3.3 63 30-109 26-88 (96)
297 2px2_A Genome polyprotein [con 96.9 0.0018 6E-08 55.6 6.9 105 184-295 63-181 (269)
298 1xmk_A Double-stranded RNA-spe 96.9 0.00063 2.2E-08 47.6 3.1 60 37-108 13-73 (79)
299 3tka_A Ribosomal RNA small sub 96.8 0.0024 8.3E-08 57.0 7.3 67 183-251 46-115 (347)
300 3lkz_A Non-structural protein 96.8 0.0036 1.2E-07 54.7 7.6 106 184-295 84-202 (321)
301 3mq0_A Transcriptional repress 96.7 0.00067 2.3E-08 59.4 2.8 58 38-108 33-90 (275)
302 3pqk_A Biofilm growth-associat 96.7 0.0014 4.7E-08 48.1 4.1 66 29-106 17-82 (102)
303 3iei_A Leucine carboxyl methyl 96.6 0.054 1.9E-06 48.5 14.6 103 196-302 90-234 (334)
304 3jth_A Transcription activator 96.6 0.002 7E-08 46.8 4.2 66 29-106 17-82 (98)
305 3ech_A MEXR, multidrug resista 96.5 0.0042 1.4E-07 48.1 6.0 95 9-111 6-105 (142)
306 3r4k_A Transcriptional regulat 96.5 0.0011 3.9E-08 57.4 2.6 59 38-108 9-67 (260)
307 2oqg_A Possible transcriptiona 96.4 0.0022 7.5E-08 47.8 3.5 63 34-108 20-82 (114)
308 1u2w_A CADC repressor, cadmium 96.4 0.0015 5.2E-08 49.7 2.5 69 28-107 35-103 (122)
309 3df8_A Possible HXLR family tr 96.3 0.0017 6E-08 48.6 2.4 71 19-111 20-93 (111)
310 1i4w_A Mitochondrial replicati 96.3 0.0094 3.2E-07 53.9 7.6 55 197-251 59-116 (353)
311 3cuo_A Uncharacterized HTH-typ 96.3 0.002 7E-08 46.6 2.6 67 31-108 20-86 (99)
312 3f6o_A Probable transcriptiona 96.3 0.0014 4.6E-08 49.6 1.7 68 29-108 12-79 (118)
313 2xrn_A HTH-type transcriptiona 96.2 0.0019 6.4E-08 55.4 2.2 60 39-110 10-69 (241)
314 2o0y_A Transcriptional regulat 96.1 0.0033 1.1E-07 54.4 3.8 58 38-108 26-83 (260)
315 1mkm_A ICLR transcriptional re 96.1 0.0031 1E-07 54.2 3.2 57 39-108 12-68 (249)
316 1r1u_A CZRA, repressor protein 96.1 0.0022 7.6E-08 47.4 2.0 52 31-87 22-73 (106)
317 2g7u_A Transcriptional regulat 96.1 0.004 1.4E-07 53.8 3.9 59 39-111 18-76 (257)
318 3bdd_A Regulatory protein MARR 96.1 0.016 5.3E-07 44.5 7.0 67 37-111 33-99 (142)
319 2wk1_A NOVP; transferase, O-me 96.1 0.012 4.2E-07 51.4 7.0 97 195-299 105-245 (282)
320 1r7j_A Conserved hypothetical 96.1 0.0058 2E-07 44.3 4.1 47 51-111 21-67 (95)
321 1ub9_A Hypothetical protein PH 96.0 0.002 7E-08 46.6 1.6 73 30-110 11-83 (100)
322 1qbj_A Protein (double-strande 96.0 0.0043 1.5E-07 43.6 3.1 62 37-109 12-75 (81)
323 1qgp_A Protein (double strande 96.0 0.0031 1.1E-07 43.9 2.4 58 37-105 16-75 (77)
324 3f6v_A Possible transcriptiona 96.0 0.0027 9.2E-08 50.3 2.3 69 28-108 51-119 (151)
325 2kko_A Possible transcriptiona 96.0 0.0015 5.2E-08 48.6 0.6 61 35-107 25-85 (108)
326 3ufb_A Type I restriction-modi 95.9 0.049 1.7E-06 52.0 11.2 115 182-298 205-363 (530)
327 2jsc_A Transcriptional regulat 95.9 0.0023 7.8E-08 48.4 1.5 64 31-106 17-80 (118)
328 2jt1_A PEFI protein; solution 95.9 0.0033 1.1E-07 43.7 2.2 37 48-87 22-58 (77)
329 1on2_A Transcriptional regulat 95.9 0.0049 1.7E-07 47.8 3.4 50 49-111 21-70 (142)
330 2hzt_A Putative HTH-type trans 95.9 0.0035 1.2E-07 46.4 2.4 56 49-111 26-82 (107)
331 2ia2_A Putative transcriptiona 95.8 0.0042 1.4E-07 53.9 3.0 57 38-108 24-80 (265)
332 3fm5_A Transcriptional regulat 95.8 0.0083 2.8E-07 46.8 4.5 66 37-112 41-109 (150)
333 1oyi_A Double-stranded RNA-bin 95.8 0.0046 1.6E-07 43.4 2.5 60 36-108 18-77 (82)
334 2y75_A HTH-type transcriptiona 95.8 0.01 3.5E-07 45.4 4.8 49 48-107 24-72 (129)
335 1yyv_A Putative transcriptiona 95.8 0.0049 1.7E-07 47.5 2.8 78 16-111 25-103 (131)
336 2wte_A CSA3; antiviral protein 95.8 0.004 1.4E-07 53.4 2.5 61 38-111 155-215 (244)
337 2obp_A Putative DNA-binding pr 95.7 0.015 5E-07 42.2 5.0 55 48-111 34-88 (96)
338 2qww_A Transcriptional regulat 95.7 0.019 6.5E-07 44.8 6.2 67 37-111 43-111 (154)
339 2zig_A TTHA0409, putative modi 95.7 0.022 7.4E-07 50.1 7.0 41 195-237 234-275 (297)
340 2fu4_A Ferric uptake regulatio 95.7 0.0061 2.1E-07 42.7 2.8 48 37-87 19-72 (83)
341 3k0l_A Repressor protein; heli 95.7 0.025 8.6E-07 44.7 6.8 65 37-112 48-115 (162)
342 2gxg_A 146AA long hypothetical 95.7 0.015 5E-07 44.9 5.2 66 37-111 39-104 (146)
343 1tbx_A ORF F-93, hypothetical 95.5 0.006 2.1E-07 44.2 2.4 62 40-112 13-78 (99)
344 1r1t_A Transcriptional repress 95.5 0.0069 2.4E-07 46.1 2.8 52 31-87 42-93 (122)
345 4a5n_A Uncharacterized HTH-typ 95.5 0.012 4.1E-07 45.3 4.2 57 49-112 38-95 (131)
346 1s3j_A YUSO protein; structura 95.5 0.026 8.9E-07 44.0 6.2 66 38-111 40-105 (155)
347 3lwf_A LIN1550 protein, putati 95.5 0.017 5.8E-07 46.0 5.1 47 49-106 43-89 (159)
348 3kp7_A Transcriptional regulat 95.4 0.038 1.3E-06 43.0 6.8 67 37-111 40-107 (151)
349 2nyx_A Probable transcriptiona 95.4 0.021 7.2E-07 45.5 5.3 68 37-112 47-114 (168)
350 1xn7_A Hypothetical protein YH 95.3 0.011 3.6E-07 41.3 3.0 44 40-87 7-50 (78)
351 2htj_A P fimbrial regulatory p 95.3 0.018 6.3E-07 40.1 4.2 44 40-87 5-48 (81)
352 2f2e_A PA1607; transcription f 95.3 0.016 5.3E-07 45.5 4.1 55 49-111 36-90 (146)
353 1z7u_A Hypothetical protein EF 95.2 0.013 4.4E-07 43.7 3.2 56 49-111 34-90 (112)
354 1ylf_A RRF2 family protein; st 95.2 0.016 5.6E-07 45.6 3.9 48 49-108 29-76 (149)
355 3t8r_A Staphylococcus aureus C 95.1 0.022 7.4E-07 44.6 4.6 49 49-108 27-75 (143)
356 3k69_A Putative transcription 95.1 0.029 9.9E-07 44.8 5.4 49 49-108 27-75 (162)
357 2qvo_A Uncharacterized protein 95.1 0.016 5.4E-07 41.7 3.5 49 50-111 30-81 (95)
358 3oop_A LIN2960 protein; protei 95.1 0.0071 2.4E-07 46.7 1.6 68 37-112 39-106 (143)
359 3boq_A Transcriptional regulat 95.1 0.022 7.5E-07 44.7 4.5 68 37-111 49-116 (160)
360 3bja_A Transcriptional regulat 95.1 0.012 4E-07 45.0 2.8 67 37-111 35-101 (139)
361 2nnn_A Probable transcriptiona 95.0 0.0078 2.7E-07 46.1 1.7 67 37-111 40-106 (140)
362 4aik_A Transcriptional regulat 95.0 0.015 5.2E-07 45.7 3.5 63 40-112 36-101 (151)
363 3bro_A Transcriptional regulat 95.0 0.014 4.7E-07 44.8 3.1 68 37-111 36-104 (141)
364 3eco_A MEPR; mutlidrug efflux 95.0 0.0093 3.2E-07 45.8 2.2 69 37-112 33-102 (139)
365 2k02_A Ferrous iron transport 95.0 0.01 3.5E-07 42.2 2.1 44 40-87 7-50 (87)
366 3hsr_A HTH-type transcriptiona 95.0 0.031 1.1E-06 43.0 5.1 67 37-111 38-104 (140)
367 2x4h_A Hypothetical protein SS 95.0 0.028 9.4E-07 43.2 4.8 50 48-111 29-78 (139)
368 3nrv_A Putative transcriptiona 95.0 0.0093 3.2E-07 46.3 2.0 67 37-111 42-108 (148)
369 2fsw_A PG_0823 protein; alpha- 95.0 0.014 4.7E-07 43.1 2.8 79 15-111 14-93 (107)
370 2zwa_A Leucine carboxyl methyl 95.0 0.26 9E-06 48.5 12.8 104 196-304 107-261 (695)
371 3deu_A Transcriptional regulat 94.9 0.0099 3.4E-07 47.5 2.1 69 37-112 55-123 (166)
372 2fa5_A Transcriptional regulat 94.9 0.021 7.1E-07 45.0 4.0 67 37-111 51-117 (162)
373 3bpv_A Transcriptional regulat 94.9 0.01 3.5E-07 45.4 1.9 64 37-111 31-97 (138)
374 3bj6_A Transcriptional regulat 94.9 0.0098 3.4E-07 46.3 1.9 67 37-111 42-108 (152)
375 2fbh_A Transcriptional regulat 94.8 0.016 5.4E-07 44.7 3.0 67 37-111 39-106 (146)
376 2pg4_A Uncharacterized protein 94.8 0.017 5.7E-07 41.6 2.9 60 43-111 23-83 (95)
377 3u1d_A Uncharacterized protein 94.8 0.22 7.5E-06 39.1 9.4 97 4-111 7-105 (151)
378 3f3x_A Transcriptional regulat 94.8 0.039 1.3E-06 42.5 5.2 64 37-112 39-105 (144)
379 3hrs_A Metalloregulator SCAR; 94.8 0.03 1E-06 46.9 4.7 52 48-112 18-69 (214)
380 1bja_A Transcription regulator 94.7 0.015 5.3E-07 41.9 2.4 61 37-112 18-79 (95)
381 4fzv_A Putative methyltransfer 94.7 0.17 5.8E-06 45.7 9.9 101 194-297 146-284 (359)
382 1jgs_A Multiple antibiotic res 94.7 0.013 4.6E-07 44.7 2.2 68 37-112 36-103 (138)
383 1lj9_A Transcriptional regulat 94.7 0.014 4.9E-07 44.9 2.4 66 38-111 32-97 (144)
384 3g3z_A NMB1585, transcriptiona 94.6 0.024 8.3E-07 43.7 3.7 67 37-111 33-99 (145)
385 3e6m_A MARR family transcripti 94.6 0.048 1.7E-06 42.9 5.4 68 37-112 55-122 (161)
386 2a61_A Transcriptional regulat 94.6 0.033 1.1E-06 42.8 4.3 64 37-111 35-101 (145)
387 2hr3_A Probable transcriptiona 94.6 0.028 9.7E-07 43.3 3.9 68 37-111 37-104 (147)
388 1xd7_A YWNA; structural genomi 94.5 0.036 1.2E-06 43.3 4.4 46 52-109 25-70 (145)
389 4hbl_A Transcriptional regulat 94.5 0.044 1.5E-06 42.5 4.9 67 37-111 43-109 (149)
390 3cdh_A Transcriptional regulat 94.5 0.025 8.5E-07 44.2 3.4 67 37-111 45-111 (155)
391 4g6q_A Putative uncharacterize 94.5 0.041 1.4E-06 44.8 4.8 75 29-110 17-92 (182)
392 3u2r_A Regulatory protein MARR 94.4 0.046 1.6E-06 43.4 4.9 66 37-112 48-117 (168)
393 2eth_A Transcriptional regulat 94.4 0.018 6.2E-07 45.1 2.4 67 37-111 46-112 (154)
394 3s2w_A Transcriptional regulat 94.4 0.015 5E-07 45.9 1.8 66 38-111 53-118 (159)
395 2rdp_A Putative transcriptiona 94.4 0.12 4.2E-06 39.8 7.2 67 37-111 44-110 (150)
396 3cjn_A Transcriptional regulat 94.4 0.018 6E-07 45.5 2.3 67 37-111 54-120 (162)
397 1z91_A Organic hydroperoxide r 94.3 0.031 1E-06 43.2 3.5 69 37-113 42-110 (147)
398 2h09_A Transcriptional regulat 94.3 0.027 9.1E-07 44.3 3.2 50 49-111 53-102 (155)
399 3r0a_A Putative transcriptiona 94.3 0.016 5.4E-07 44.1 1.7 48 37-87 28-76 (123)
400 2lnb_A Z-DNA-binding protein 1 94.2 0.027 9.2E-07 38.5 2.6 55 37-104 21-75 (80)
401 2vz8_A Fatty acid synthase; tr 94.2 0.016 5.4E-07 65.1 2.2 98 197-299 1241-1350(2512)
402 2bv6_A MGRA, HTH-type transcri 94.1 0.038 1.3E-06 42.4 3.8 67 37-111 39-105 (142)
403 2pex_A Transcriptional regulat 94.1 0.024 8.1E-07 44.2 2.5 69 37-113 49-117 (153)
404 2lkp_A Transcriptional regulat 93.9 0.024 8.1E-07 42.5 2.1 50 33-87 30-79 (119)
405 3tgn_A ADC operon repressor AD 93.7 0.037 1.3E-06 42.6 3.0 66 37-111 40-105 (146)
406 2p4w_A Transcriptional regulat 93.7 0.046 1.6E-06 45.3 3.6 72 30-108 10-81 (202)
407 2zkz_A Transcriptional repress 93.6 0.014 4.8E-07 42.5 0.3 48 49-107 40-87 (99)
408 3nqo_A MARR-family transcripti 93.5 0.086 2.9E-06 42.9 5.0 70 36-112 42-112 (189)
409 3jw4_A Transcriptional regulat 93.5 0.044 1.5E-06 42.4 3.1 69 37-112 43-112 (148)
410 4b8x_A SCO5413, possible MARR- 93.5 0.044 1.5E-06 42.7 3.0 53 49-111 50-105 (147)
411 2frh_A SARA, staphylococcal ac 93.4 0.047 1.6E-06 41.4 3.0 68 38-112 40-108 (127)
412 2fbi_A Probable transcriptiona 93.4 0.023 7.7E-07 43.5 1.2 64 37-111 38-104 (142)
413 3g7u_A Cytosine-specific methy 93.3 0.57 2E-05 42.5 10.5 97 198-301 3-122 (376)
414 2fbk_A Transcriptional regulat 93.1 0.021 7E-07 46.2 0.5 68 37-111 71-140 (181)
415 2qlz_A Transcription factor PF 93.0 0.018 6.1E-07 48.9 0.0 74 29-109 6-80 (232)
416 1sfx_A Conserved hypothetical 92.8 0.041 1.4E-06 39.9 1.8 47 37-87 22-68 (109)
417 4fx0_A Probable transcriptiona 92.4 0.085 2.9E-06 41.1 3.2 52 49-111 51-105 (148)
418 2oo3_A Protein involved in cat 92.3 0.38 1.3E-05 41.8 7.5 141 154-301 45-202 (283)
419 1q1h_A TFE, transcription fact 92.3 0.043 1.5E-06 40.5 1.3 46 38-86 21-66 (110)
420 2fxa_A Protease production reg 92.2 0.043 1.5E-06 45.6 1.4 68 37-112 50-117 (207)
421 3r24_A NSP16, 2'-O-methyl tran 92.1 0.28 9.6E-06 42.9 6.3 92 194-296 107-216 (344)
422 2fe3_A Peroxide operon regulat 91.9 0.2 6.8E-06 39.0 4.8 59 37-104 24-87 (145)
423 1okr_A MECI, methicillin resis 91.8 0.03 1E-06 42.0 -0.0 51 49-111 23-80 (123)
424 1sfu_A 34L protein; protein/Z- 91.8 0.18 6.3E-06 34.4 3.9 42 42-87 22-63 (75)
425 2o03_A Probable zinc uptake re 91.6 0.13 4.4E-06 39.3 3.4 50 36-88 12-66 (131)
426 1p6r_A Penicillinase repressor 91.6 0.071 2.4E-06 37.0 1.7 49 38-87 12-61 (82)
427 1uly_A Hypothetical protein PH 91.2 0.14 4.9E-06 41.9 3.5 52 30-86 15-66 (192)
428 2k4b_A Transcriptional regulat 91.2 0.057 1.9E-06 39.3 0.8 50 37-87 37-87 (99)
429 1g60_A Adenine-specific methyl 91.1 0.31 1E-05 41.8 5.7 41 195-237 211-252 (260)
430 2vn2_A DNAD, chromosome replic 91.1 0.16 5.5E-06 38.7 3.4 35 50-87 51-85 (128)
431 2d1h_A ST1889, 109AA long hypo 91.0 0.16 5.6E-06 36.6 3.3 36 49-87 35-70 (109)
432 1zkd_A DUF185; NESG, RPR58, st 91.0 1.1 3.6E-05 40.9 9.3 68 164-237 54-128 (387)
433 2w25_A Probable transcriptiona 90.8 0.12 4.2E-06 40.3 2.6 47 37-87 9-55 (150)
434 2cfx_A HTH-type transcriptiona 90.8 0.12 4.2E-06 40.0 2.6 45 38-86 8-52 (144)
435 2pn6_A ST1022, 150AA long hypo 90.8 0.1 3.5E-06 40.6 2.1 46 37-86 5-50 (150)
436 1p4x_A Staphylococcal accessor 90.8 0.1 3.5E-06 44.7 2.2 66 37-112 160-229 (250)
437 1v4r_A Transcriptional repress 90.7 0.23 8E-06 35.9 3.9 53 31-87 15-69 (102)
438 1ku9_A Hypothetical protein MJ 90.4 0.59 2E-05 35.6 6.3 36 49-87 40-75 (152)
439 2py6_A Methyltransferase FKBM; 90.3 0.45 1.5E-05 43.7 6.3 54 195-248 225-290 (409)
440 2p5v_A Transcriptional regulat 90.2 0.14 4.9E-06 40.4 2.6 45 38-86 13-57 (162)
441 1mzb_A Ferric uptake regulatio 90.1 0.32 1.1E-05 37.3 4.4 59 37-104 20-84 (136)
442 3i71_A Ethanolamine utilizatio 89.9 0.45 1.5E-05 30.4 4.1 44 49-106 17-60 (68)
443 2qq9_A Diphtheria toxin repres 89.7 0.36 1.2E-05 40.5 4.7 50 50-112 24-73 (226)
444 3k2z_A LEXA repressor; winged 89.6 0.16 5.5E-06 41.6 2.5 39 46-87 20-58 (196)
445 2xvc_A ESCRT-III, SSO0910; cel 89.6 0.2 7E-06 32.0 2.3 46 38-86 13-58 (59)
446 3cta_A Riboflavin kinase; stru 89.5 0.24 8.2E-06 41.6 3.5 54 49-112 26-79 (230)
447 3mwm_A ZUR, putative metal upt 89.4 0.27 9.4E-06 37.9 3.5 61 36-105 15-80 (139)
448 2cg4_A Regulatory protein ASNC 89.4 0.16 5.3E-06 39.7 2.2 45 38-86 11-55 (152)
449 2esh_A Conserved hypothetical 89.4 0.46 1.6E-05 35.4 4.7 68 36-111 14-90 (118)
450 1g55_A DNA cytosine methyltran 89.4 1.3 4.5E-05 39.5 8.5 102 198-301 3-122 (343)
451 1fx7_A Iron-dependent represso 89.3 0.29 9.8E-06 41.2 3.9 48 51-111 25-72 (230)
452 2dbb_A Putative HTH-type trans 89.2 0.17 5.9E-06 39.4 2.2 46 37-86 11-56 (151)
453 2ia0_A Putative HTH-type trans 88.8 0.21 7.3E-06 40.0 2.6 46 37-86 19-64 (171)
454 2cyy_A Putative HTH-type trans 88.8 0.14 4.7E-06 40.0 1.4 46 37-86 9-54 (151)
455 3i4p_A Transcriptional regulat 88.7 0.19 6.5E-06 39.8 2.2 46 37-86 5-50 (162)
456 1j5y_A Transcriptional regulat 88.6 0.32 1.1E-05 39.5 3.5 57 37-107 23-80 (187)
457 2p8t_A Hypothetical protein PH 88.6 0.44 1.5E-05 39.2 4.3 49 49-111 29-77 (200)
458 2xig_A Ferric uptake regulatio 88.4 0.31 1.1E-05 38.1 3.2 52 34-88 26-82 (150)
459 2e1c_A Putative HTH-type trans 87.9 0.2 7E-06 40.1 1.9 47 36-86 28-74 (171)
460 1i1g_A Transcriptional regulat 87.8 0.18 6.1E-06 38.7 1.4 44 39-86 8-51 (141)
461 2c7p_A Modification methylase 87.3 2.7 9.2E-05 37.2 9.1 95 197-301 11-123 (327)
462 2g9w_A Conserved hypothetical 87.2 0.25 8.7E-06 37.9 2.0 47 38-87 12-62 (138)
463 2v79_A DNA replication protein 87.0 0.35 1.2E-05 37.2 2.6 36 49-87 50-85 (135)
464 3ke2_A Uncharacterized protein 86.6 0.77 2.6E-05 33.8 4.1 53 50-108 33-85 (117)
465 2hoe_A N-acetylglucosamine kin 86.5 0.46 1.6E-05 43.0 3.6 74 29-108 14-87 (380)
466 3elk_A Putative transcriptiona 85.7 0.47 1.6E-05 35.4 2.8 70 36-112 15-90 (117)
467 1p4x_A Staphylococcal accessor 85.5 0.43 1.5E-05 40.7 2.7 64 38-111 37-104 (250)
468 2o0m_A Transcriptional regulat 85.2 0.17 5.7E-06 45.5 0.0 61 37-112 22-82 (345)
469 4esf_A PADR-like transcription 85.2 0.82 2.8E-05 34.1 3.8 64 41-111 17-86 (117)
470 3tos_A CALS11; methyltransfera 84.5 2.3 7.8E-05 36.4 6.8 95 196-297 69-217 (257)
471 2pjp_A Selenocysteine-specific 84.3 0.84 2.9E-05 34.2 3.6 55 37-106 9-63 (121)
472 1sd4_A Penicillinase repressor 84.3 0.28 9.7E-06 36.6 0.9 49 38-87 13-62 (126)
473 2b0l_A GTP-sensing transcripti 83.9 1.2 4.1E-05 32.3 4.2 44 40-87 33-77 (102)
474 2qlz_A Transcription factor PF 83.8 1.4 4.8E-05 37.1 5.2 51 40-105 170-220 (232)
475 3fwz_A Inner membrane protein 83.8 8.7 0.0003 28.9 9.4 88 197-295 7-103 (140)
476 3qv2_A 5-cytosine DNA methyltr 83.6 2.5 8.5E-05 37.5 6.9 103 196-301 9-133 (327)
477 1hsj_A Fusion protein consisti 82.7 0.65 2.2E-05 43.3 2.9 65 37-111 406-474 (487)
478 3ggo_A Prephenate dehydrogenas 82.7 7.4 0.00025 34.1 9.7 84 197-286 33-120 (314)
479 1yg2_A Gene activator APHA; vi 82.3 0.85 2.9E-05 36.6 3.1 65 38-109 5-77 (179)
480 2w57_A Ferric uptake regulatio 82.1 0.63 2.1E-05 36.3 2.1 48 37-87 19-72 (150)
481 3f8b_A Transcriptional regulat 82.0 1.4 4.9E-05 32.6 4.1 68 37-111 14-89 (116)
482 1z6r_A MLC protein; transcript 81.7 0.82 2.8E-05 41.7 3.1 46 38-87 19-64 (406)
483 3l7w_A Putative uncharacterize 81.7 0.65 2.2E-05 34.0 2.0 64 40-111 14-81 (108)
484 3tqn_A Transcriptional regulat 81.4 1.7 5.8E-05 32.0 4.2 50 31-87 17-67 (113)
485 2dk5_A DNA-directed RNA polyme 81.3 0.67 2.3E-05 33.0 1.8 45 40-87 25-70 (91)
486 1xma_A Predicted transcription 81.3 0.48 1.7E-05 36.8 1.2 70 35-111 41-118 (145)
487 3e6c_C CPRK, cyclic nucleotide 81.2 1.9 6.5E-05 35.9 5.1 36 49-87 176-211 (250)
488 1bia_A BIRA bifunctional prote 80.5 1.3 4.5E-05 39.1 3.9 54 39-105 9-62 (321)
489 3maj_A DNA processing chain A; 80.4 1.1 3.7E-05 40.7 3.3 52 38-104 331-382 (382)
490 2ek5_A Predicted transcription 79.3 2.7 9.2E-05 31.8 4.8 51 30-87 11-62 (129)
491 3llv_A Exopolyphosphatase-rela 79.2 17 0.00059 27.0 9.9 63 198-263 7-78 (141)
492 3l9w_A Glutathione-regulated p 78.6 9.6 0.00033 34.8 9.2 87 198-295 5-100 (413)
493 3by6_A Predicted transcription 78.4 5.7 0.0002 29.7 6.5 51 30-87 18-69 (126)
494 1cf7_A Protein (transcription 77.7 2.3 7.7E-05 29.1 3.5 37 49-87 29-65 (76)
495 3ew7_A LMO0794 protein; Q8Y8U8 77.3 10 0.00035 30.4 8.3 95 199-298 2-103 (221)
496 1jhg_A Trp operon repressor; c 77.1 1.3 4.3E-05 32.2 2.2 40 35-79 45-84 (101)
497 3hhh_A Transcriptional regulat 76.6 1.5 5.1E-05 32.6 2.6 68 37-111 15-88 (116)
498 3eyy_A Putative iron uptake re 76.2 1.3 4.5E-05 34.2 2.3 47 37-87 21-72 (145)
499 3dv8_A Transcriptional regulat 76.1 2.7 9.2E-05 34.0 4.4 35 50-87 169-203 (220)
500 2dph_A Formaldehyde dismutase; 75.9 14 0.00047 33.3 9.4 101 194-299 183-301 (398)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=3.3e-48 Score=357.14 Aligned_cols=275 Identities=20% Similarity=0.322 Sum_probs=246.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCC
Q 037127 14 EAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRN 93 (307)
Q Consensus 14 ~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~ 93 (307)
++...|++++.||+.+++|++|++|||||.|.+.++|+|++|||+++|+ +++.++|+|++|++.|+|++...
T Consensus 7 ~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~~~~----- 78 (353)
T 4a6d_A 7 QAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRA---SAHGTELLLDICVSLKLLKVETR----- 78 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCc---CHHHHHHHHHHHHHCCCEEEecc-----
Confidence 5566789999999999999999999999999875579999999999999 78999999999999999987643
Q ss_pred CCCCCCeeecChhcc-hhhcCCCCChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcC---CCccccccCCcHHHH
Q 037127 94 NNDEEQGYVLTNASK-LLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHG---KSFWEYAGDEPKINN 169 (307)
Q Consensus 94 ~~~~~~~y~~t~~s~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g---~~~~~~~~~~~~~~~ 169 (307)
++.++|++|+.++ ++.++++.++..++.+.. +..+..|..|++++++++ ++|...+| .++|+++.++++...
T Consensus 79 --~~~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 154 (353)
T 4a6d_A 79 --GGKAFYRNTELSSDYLTTVSPTSQCSMLKYMG-RTSYRCWGHLADAVREGR-NQYLETFGVPAEELFTAIYRSEGERL 154 (353)
T ss_dssp --TTEEEEEECHHHHHHHSTTSTTCCHHHHHHHH-HTHHHHHTTHHHHHHHTS-CCHHHHHSCCCSSHHHHHTSSHHHHH
T ss_pred --CccceeeCCHHHHHHhhcCCchHHHHHHHHhC-HHHHHHHHHHHHHHhcCC-ChhHHhcCCChHHHHHHHhhCHHHHH
Confidence 2246899999998 566777888998887763 456889999999999998 57888877 467899999999999
Q ss_pred HHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh-----cCCCeEE
Q 037127 170 FFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES-----DLANLKY 244 (307)
Q Consensus 170 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~-----~~~rv~~ 244 (307)
.|.++|...+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ ..+||+|
T Consensus 155 ~f~~aM~~~~~~~~~~~~~~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~ 232 (353)
T 4a6d_A 155 QFMQALQEVWSVNGRSVLTAFD--LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDF 232 (353)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSC--GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceee
Confidence 9999999988888888999998 78888999999999999999999999999999999999999886 4689999
Q ss_pred EecCCCCC-CCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCC
Q 037127 245 VGGDMFEA-IPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKG 305 (307)
Q Consensus 245 ~~~d~~~~-~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~~ 305 (307)
+.+|++++ .|++|+|+++++||+|+|+++.++|++++++|+| ||+++|+|.++++++.
T Consensus 233 ~~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~p---gg~lli~e~~~~~~~~ 291 (353)
T 4a6d_A 233 QEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKP---GGGILVIESLLDEDRR 291 (353)
T ss_dssp EESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCT---TCEEEEEECCCCTTSC
T ss_pred ecCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCC---CCEEEEEEeeeCCCCC
Confidence 99999984 6679999999999999999999999999999999 9999999999988754
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=6.3e-46 Score=343.30 Aligned_cols=289 Identities=30% Similarity=0.558 Sum_probs=252.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCC-CCCCHHHHHHHcCC--CCCCcccHHHHHHHHHhCCceee
Q 037127 9 DTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHG-KPTTLNDLVSALTI--NPSKTRCVYRLMRILIHSGFFAQ 85 (307)
Q Consensus 9 ~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~-~~~t~~eLA~~~g~--~~~~~~~l~r~L~~L~~~g~l~~ 85 (307)
..+..++...+++++++++.+++|++|+++|||++|...| +|+|++|||+++|+ +|.++..|+||||+|++.|+|++
T Consensus 14 ~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~ 93 (364)
T 3p9c_A 14 ASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTC 93 (364)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEE
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEE
Confidence 5667888999999999999999999999999999999754 69999999999997 53223399999999999999998
Q ss_pred eccCCCCCCCCCCCeeecChhcchhhcCC-CCChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccCC
Q 037127 86 QTLNSSRNNNDEEQGYVLTNASKLLLKDS-PLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDE 164 (307)
Q Consensus 86 ~~~~~~~~~~~~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~ 164 (307)
..... ..+..+++|++|+.++.|+++. +.++.+++.+..++.++..|.+|+++++++. ++|+..+|.++|+|+..+
T Consensus 94 ~~~~~--~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~-~~~~~~~g~~~~~~~~~~ 170 (364)
T 3p9c_A 94 LVEEG--KDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGG-IPFNKAYGMSAFEYHGTD 170 (364)
T ss_dssp EEEEC--SSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHHTTC
T ss_pred ecccc--CCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCC-ChHHHhcCCCHHHHHHhC
Confidence 73100 0000136899999999887654 5689998887767778899999999999987 799999999999999999
Q ss_pred cHHHHHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEE
Q 037127 165 PKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKY 244 (307)
Q Consensus 165 ~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~ 244 (307)
++..+.|.++|...+....+.+++.++ .+.+..+|||||||+|.++..+++++|+++++++|+|.+++.++ ..+||+|
T Consensus 171 ~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-~~~~v~~ 248 (364)
T 3p9c_A 171 PRFNRVFNEGMKNHSIIITKKLLELYH-GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAP-QFPGVTH 248 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCC-CCTTEEE
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhcc-cccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhh-hcCCeEE
Confidence 999999999999888777777888776 25677899999999999999999999999999999999999888 5589999
Q ss_pred EecCCCCCCCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCC
Q 037127 245 VGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKG 305 (307)
Q Consensus 245 ~~~d~~~~~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~~ 305 (307)
+.+|+++++|..|+|+++++||+|+++++.++|++++++|+| ||+++|+|.+.++..+
T Consensus 249 ~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~ 306 (364)
T 3p9c_A 249 VGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPA---HGKVVLVQCILPVNPE 306 (364)
T ss_dssp EECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSCC
T ss_pred EeCCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCC
Confidence 999999988867999999999999999999999999999999 9999999999987654
No 3
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=5.4e-45 Score=335.19 Aligned_cols=274 Identities=22% Similarity=0.415 Sum_probs=248.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccC
Q 037127 10 TELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLN 89 (307)
Q Consensus 10 ~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~ 89 (307)
-...++...+++++.|++.+++|++|+++|||++|.+ +|+|++|||+++|+ +++.++|||++|++.|+|++ .
T Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~g~---~~~~l~rlLr~l~~~g~l~~-~-- 88 (348)
T 3lst_A 17 MDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD--GPRTPAELAAATGT---DADALRRVLRLLAVRDVVRE-S-- 88 (348)
T ss_dssp CCHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT--SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEE-E--
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCEEe-c--
Confidence 3456788999999999999999999999999999985 79999999999999 68999999999999999999 4
Q ss_pred CCCCCCCCCCeeecChhcchhhcCCCCChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHHH
Q 037127 90 SSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINN 169 (307)
Q Consensus 90 ~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~~ 169 (307)
+++|++|+.++.++++++.++.+++.+..++.++..|.+|+++++++. ++|+..+|.++|+|+.++++..+
T Consensus 89 --------~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~ 159 (348)
T 3lst_A 89 --------DGRFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPER-PAFADIFGSSLDAYFDGDAEVEA 159 (348)
T ss_dssp --------TTEEEECTTTGGGSTTSSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTC-CCHHHHHSSCHHHHHTTCHHHHH
T ss_pred --------CCEEecCHHHHHHhcCCCccHHHHHHHhcCHHHHHHHHHHHHHHhcCC-ChhhHHhCCCHHHHHHhCHHHHH
Confidence 589999999998888877789988877666657899999999999987 67988999999999999999999
Q ss_pred HHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh----cCCCeEEE
Q 037127 170 FFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES----DLANLKYV 245 (307)
Q Consensus 170 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~----~~~rv~~~ 245 (307)
.|.++|...+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.++...+. ..+||+|+
T Consensus 160 ~f~~~m~~~~~~~~~~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~ 237 (348)
T 3lst_A 160 LYYEGMETVSAAEHLILARAGD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVV 237 (348)
T ss_dssp HHHHHHHHHHHTTHHHHHHHSC--CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEE
T ss_pred HHHHHHHHhhhhhHHHHHHhCC--ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEE
Confidence 9999999988887888888888 77889999999999999999999999999999999888773221 46789999
Q ss_pred ecCCCCCCCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCC
Q 037127 246 GGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKG 305 (307)
Q Consensus 246 ~~d~~~~~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~~ 305 (307)
.+|+++++|.||+|+++++||+|+++++.++|++++++|+| ||+++|+|.+.++...
T Consensus 238 ~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lkp---gG~l~i~e~~~~~~~~ 294 (348)
T 3lst_A 238 EGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPA---HGRVLVIDAVVPEGND 294 (348)
T ss_dssp ECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCT---TCEEEEEECCBCSSSS
T ss_pred ecCCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCC
Confidence 99999877899999999999999999999999999999999 9999999999887643
No 4
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=2.6e-45 Score=337.80 Aligned_cols=292 Identities=50% Similarity=0.885 Sum_probs=254.7
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCC
Q 037127 2 NLIDGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSG 81 (307)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g 81 (307)
|+|+....+++.++...+++++.+++.+++|++++++|||+.|...++|.|++|||+++|++|.+++.++|||++|++.|
T Consensus 3 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~g 82 (352)
T 1fp2_A 3 SSINGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNG 82 (352)
T ss_dssp -----CCSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTT
T ss_pred ccccCCChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCC
Confidence 89999999999999999999999999999999999999999998744599999999999996545789999999999999
Q ss_pred ceeeeccCCCCCCCCCCCeeecChhcchhhcCCCCChHHHHHHhcCcchhhhhhhHHHhhh-cCCCChhhhhcCCCcccc
Q 037127 82 FFAQQTLNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQ-SDDPAPFDMVHGKSFWEY 160 (307)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~f~~~~g~~~~~~ 160 (307)
+|++.+ +++++|++|+.++.|+++++.++.+++.+..++.++..|.+|+++++ ++. ++|+..+|.++|++
T Consensus 83 ll~~~~--------~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~g~~~~~~ 153 (352)
T 1fp2_A 83 FFEIIT--------KEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDL-TLFGVTLGSGFWDF 153 (352)
T ss_dssp SEEEEE--------SSSEEEEECHHHHTTSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSC-CHHHHHHSSCHHHH
T ss_pred eEEEec--------CCCCeEeCCHHHHHHhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcCC-ChHHHHcCCCHHHH
Confidence 999872 01489999999999988887789999888766667889999999999 665 78998899999999
Q ss_pred ccCCcHHHHHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCC
Q 037127 161 AGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLA 240 (307)
Q Consensus 161 ~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~ 240 (307)
+.++++..+.|..+|...+....+. +..+++.+.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+
T Consensus 154 ~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~ 231 (352)
T 1fp2_A 154 LDKNPEYNTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG-SN 231 (352)
T ss_dssp HHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-BT
T ss_pred HHhChHHHHHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhccc-CC
Confidence 9999999999999999887766566 777722267788999999999999999999999999999999999998884 35
Q ss_pred CeEEEecCCCCCCCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 037127 241 NLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK 304 (307)
Q Consensus 241 rv~~~~~d~~~~~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~ 304 (307)
+|+|+.+|+++++|.||+|+++++||+|+++++.++|++++++|+|.++||+++|+|.+.++..
T Consensus 232 ~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~ 295 (352)
T 1fp2_A 232 NLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKK 295 (352)
T ss_dssp TEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTT
T ss_pred CcEEEeccccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCC
Confidence 6999999999888889999999999999999999999999999996222799999999988754
No 5
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=9.2e-45 Score=336.03 Aligned_cols=287 Identities=31% Similarity=0.598 Sum_probs=249.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccC---CCCCCHHHHHHHcC-CCCCCcccHHHHHHHHHhCCceee
Q 037127 10 TELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKH---GKPTTLNDLVSALT-INPSKTRCVYRLMRILIHSGFFAQ 85 (307)
Q Consensus 10 ~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~---~~~~t~~eLA~~~g-~~~~~~~~l~r~L~~L~~~g~l~~ 85 (307)
.+..++...+++++.|++.+++|++|+++|||+.|... ++|+|++|||+++| .+|.+++.|+||||+|++.|+|++
T Consensus 16 ~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~ 95 (368)
T 3reo_A 16 SSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTY 95 (368)
T ss_dssp -CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEE
Confidence 35677889999999999999999999999999999873 35799999999998 443234599999999999999998
Q ss_pred eccCCCCCCCCC-CCeeecChhcchhhcC-CCCChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccC
Q 037127 86 QTLNSSRNNNDE-EQGYVLTNASKLLLKD-SPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGD 163 (307)
Q Consensus 86 ~~~~~~~~~~~~-~~~y~~t~~s~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~ 163 (307)
..... .++. +++|++|+.++.|+.+ ++.++.+++.+..++.++..|.+|+++++++. ++|+..+|.++|+|+..
T Consensus 96 ~~~~~---~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~-~~~~~~~g~~~~~~~~~ 171 (368)
T 3reo_A 96 TLREL---PSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGG-IPFNKAYGMNIFDYHGT 171 (368)
T ss_dssp EEEEC---TTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCS-CHHHHHSSSCHHHHHTT
T ss_pred ecccC---CCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCC-CHHHHHhCCCHHHHHhh
Confidence 62100 0000 2689999999988765 46789999887767778899999999999987 79999999999999999
Q ss_pred CcHHHHHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeE
Q 037127 164 EPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLK 243 (307)
Q Consensus 164 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~ 243 (307)
+++..+.|.++|...+....+.+++.++ .+.+..+|||||||+|.++..+++++|+++++++|+|.+++.++ ..++|+
T Consensus 172 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-~~~~v~ 249 (368)
T 3reo_A 172 DHRINKVFNKGMSSNSTITMKKILEMYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAP-AFSGVE 249 (368)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCC-CCTTEE
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHhcc-cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhh-hcCCCE
Confidence 9999999999999888777777888776 25677899999999999999999999999999999999998888 557999
Q ss_pred EEecCCCCCCCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCC
Q 037127 244 YVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKG 305 (307)
Q Consensus 244 ~~~~d~~~~~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~~ 305 (307)
|+.+|+++++|..|+|+++++||+|+++++.++|++++++|+| ||+++|+|.+.++...
T Consensus 250 ~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~ 308 (368)
T 3reo_A 250 HLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPD---HGKVIVAEYILPPSPD 308 (368)
T ss_dssp EEECCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCT---TCEEEEEECCCCSSCC
T ss_pred EEecCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCC
Confidence 9999999988867999999999999999999999999999999 9999999999987654
No 6
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=4.5e-44 Score=331.57 Aligned_cols=274 Identities=27% Similarity=0.501 Sum_probs=249.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccC
Q 037127 10 TELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLN 89 (307)
Q Consensus 10 ~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~ 89 (307)
..-.+...++++++.+++.+++|++|+++|||+.|.. +|+|++|||+++|+ +++.++|||++|++.|+|++.+
T Consensus 33 ~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~eLA~~~g~---~~~~l~rlLr~L~~~g~l~~~~-- 105 (369)
T 3gwz_A 33 AARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE--GPRTATALAEATGA---HEQTLRRLLRLLATVGVFDDLG-- 105 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSSEECS--
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCCEEEeC--
Confidence 3344667889999999999999999999999999985 79999999999999 6899999999999999999975
Q ss_pred CCCCCCCCCCe-eecChhcchhhcCCCCChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHH
Q 037127 90 SSRNNNDEEQG-YVLTNASKLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKIN 168 (307)
Q Consensus 90 ~~~~~~~~~~~-y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~ 168 (307)
+++ |++|+.++.|.++++.++..++.+..++..+..|.+|+++++++. ++|...+|.++|+|+.++++..
T Consensus 106 --------~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~ 176 (369)
T 3gwz_A 106 --------HDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGE-ASFDVANGTSFWQLTHEDPKAR 176 (369)
T ss_dssp --------STTEEECCHHHHTTSCCTTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHH
T ss_pred --------CCceEecCHHHHHHhcCCchhHHHHHHHcCCHHHHHHHHhHHHHHhCCC-ChhHhhcCCCHHHHHHhCHHHH
Confidence 578 999999999888777788888887766556789999999999997 6788889989999999999999
Q ss_pred HHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCe
Q 037127 169 NFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANL 242 (307)
Q Consensus 169 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv 242 (307)
+.|.++|...+....+.+++.++ +.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++ ..+||
T Consensus 177 ~~f~~~m~~~~~~~~~~l~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v 254 (369)
T 3gwz_A 177 ELFNRAMGSVSLTEAGQVAAAYD--FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRC 254 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTE
T ss_pred HHHHHHHHHHHhhhHHHHHHhCC--CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCce
Confidence 99999999888777788888887 67789999999999999999999999999999999999998886 36899
Q ss_pred EEEecCCCCCCC-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 037127 243 KYVGGDMFEAIP-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK 304 (307)
Q Consensus 243 ~~~~~d~~~~~p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~ 304 (307)
+|+.+|+++++| .||+|+++++||+|+++++.++|++++++|+| ||+++|+|.+.++..
T Consensus 255 ~~~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~ 314 (369)
T 3gwz_A 255 EILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKP---DSRLLVIDNLIDERP 314 (369)
T ss_dssp EEEECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEEBCCSSC
T ss_pred EEeccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCC
Confidence 999999998888 69999999999999999999999999999999 999999999998764
No 7
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=4.9e-44 Score=329.98 Aligned_cols=295 Identities=46% Similarity=0.856 Sum_probs=252.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 8 HDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 8 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+.+++.++...+++++.+++.+++|++|+++|||++|+..|+|.|++|||+++|++|.+++.++|||++|++.|+|++..
T Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~ 82 (358)
T 1zg3_A 3 EESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTI 82 (358)
T ss_dssp TTSCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEE
T ss_pred chHHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEec
Confidence 34678889999999999999999999999999999998744599999999999997656889999999999999999871
Q ss_pred cCCCCCCCCCCCeeecChhcchhhcCCCCChHHHHHHhcCcchhhhhhhHHHhhhcCC-CChhhhhcCCCccccccCCcH
Q 037127 88 LNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDD-PAPFDMVHGKSFWEYAGDEPK 166 (307)
Q Consensus 88 ~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~f~~~~g~~~~~~~~~~~~ 166 (307)
.......+..+++|++|+.++.|+++++.++.+++.+..++.++..|..|+++++++. .++|+..+|.++|+++.++|+
T Consensus 83 ~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~ 162 (358)
T 1zg3_A 83 VKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSE 162 (358)
T ss_dssp ECCSSSSCCCEEEEEECHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGG
T ss_pred ccccccCCCCCCEEeCCHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChh
Confidence 0000000000379999999999988887789999888766677899999999999984 378998899999999999999
Q ss_pred HHH--HHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEE
Q 037127 167 INN--FFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKY 244 (307)
Q Consensus 167 ~~~--~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~ 244 (307)
..+ .|..+|...+.... .+++.+++.+.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .++|++
T Consensus 163 ~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~v~~ 240 (358)
T 1zg3_A 163 SSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG-NENLNF 240 (358)
T ss_dssp HHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC-CSSEEE
T ss_pred hhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc-CCCcEE
Confidence 999 99999998776655 67777732266778999999999999999999999999999999999988874 456999
Q ss_pred EecCCCCCCCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 037127 245 VGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK 304 (307)
Q Consensus 245 ~~~d~~~~~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~ 304 (307)
+.+|+++++|.+|+|+++++||+|+++++.++|++++++|+|.++||+++|+|.+.+++.
T Consensus 241 ~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~ 300 (358)
T 1zg3_A 241 VGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETS 300 (358)
T ss_dssp EECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTC
T ss_pred EeCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCC
Confidence 999999988889999999999999999999999999999996111799999999988754
No 8
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=4.9e-44 Score=326.65 Aligned_cols=266 Identities=25% Similarity=0.394 Sum_probs=237.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCC
Q 037127 17 AHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNND 96 (307)
Q Consensus 17 ~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~ 96 (307)
..+++++.|++.+++|++|+++|||++|.. +|.|++|||+++|+ +++.++|||++|++.|+|++.+
T Consensus 7 ~~l~~~~~g~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~---~~~~l~rlLr~l~~~gl~~~~~--------- 72 (332)
T 3i53_A 7 HIGLRALADLATPMAVRVAATLRVADHIAA--GHRTAAEIASAAGA---HADSLDRLLRHLVAVGLFTRDG--------- 72 (332)
T ss_dssp SSCHHHHTCCHHHHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT---------
T ss_pred HHHHHHHHhhHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEecC---------
Confidence 457889999999999999999999999985 79999999999999 6899999999999999999875
Q ss_pred CCCeeecChhcchhhcCCCCChHHHHHHhcCcchh-hhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHHHHHHHHH
Q 037127 97 EEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPILL-SPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAM 175 (307)
Q Consensus 97 ~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~~~f~~~m 175 (307)
+++|++|+.++.+.++++.++..++.+......+ ..|.+|+++++++. ++|+..+|.++|+++.++++..+.|..+|
T Consensus 73 -~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 150 (332)
T 3i53_A 73 -QGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQ-PAYPVRYGTSFWEDLGSDPVLSASFDTLM 150 (332)
T ss_dssp -TSBEEECTTGGGGSTTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHH
T ss_pred -CCeEEcCHhHHHHhcCCchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCC-CHHHHhhCCCHHHHHHhCHHHHHHHHHHH
Confidence 5899999999988877777888887665433345 78999999999997 67988899899999999999999999999
Q ss_pred HhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCC
Q 037127 176 ASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDM 249 (307)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~ 249 (307)
...+....+.+++.++ +.+..+|||||||+|.++..+++.+|+++++++|+|.+++.+++ ..+||+|+.+|+
T Consensus 151 ~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 228 (332)
T 3i53_A 151 SHHLELDYTGIAAKYD--WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSF 228 (332)
T ss_dssp HHHHHHHHTTGGGSSC--CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHhHHhhHHHHHHhCC--CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCC
Confidence 9887666666777776 56678999999999999999999999999999999999998876 358999999999
Q ss_pred CCCCC-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 250 FEAIP-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 250 ~~~~p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
++++| .||+|+++++||+|+++++.++|++++++|+| ||+++|+|.+.++.
T Consensus 229 ~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~ 280 (332)
T 3i53_A 229 FDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGS---GGVVLVIEAVAGDE 280 (332)
T ss_dssp TSCCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTT---TCEEEEEECCCC--
T ss_pred CCCCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCC---CCEEEEEeecCCCC
Confidence 98888 79999999999999999999999999999999 99999999988765
No 9
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=3.8e-43 Score=325.65 Aligned_cols=287 Identities=29% Similarity=0.532 Sum_probs=236.8
Q ss_pred chhhHHHHHHHH--HHHHHHHHHHHHHHHHhCCcccccccCCCC---CCHHHHHHHcCC---CCCCcccHHHHHHHHHhC
Q 037127 9 DTELLEAQAHVW--NHIFNFINSMSLKCAVELSIPDIINKHGKP---TTLNDLVSALTI---NPSKTRCVYRLMRILIHS 80 (307)
Q Consensus 9 ~~~~~~~~~~l~--~~~~g~~~~~~L~~a~~lglfd~L~~~~~~---~t~~eLA~~~g~---~~~~~~~l~r~L~~L~~~ 80 (307)
.++..+++..++ +++.+++.+++|++|+++|||+.|+..|+| +|++|||+++|+ +|.+++.++|||++|++.
T Consensus 16 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~ 95 (372)
T 1fp1_D 16 TSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASY 95 (372)
T ss_dssp ---CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHT
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhC
Confidence 556778888999 999999999999999999999999964226 999999999999 655679999999999999
Q ss_pred CceeeeccCCCCCCCCC--CCeeecChhcchhhcCCC-CChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCc
Q 037127 81 GFFAQQTLNSSRNNNDE--EQGYVLTNASKLLLKDSP-LSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSF 157 (307)
Q Consensus 81 g~l~~~~~~~~~~~~~~--~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~ 157 (307)
|+|++.... +.++ +++|++|+.++.|+++++ .++.+++.+..++.++..|.+|+++++++..++|+..+|.++
T Consensus 96 gll~~~~~~----~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~ 171 (372)
T 1fp1_D 96 SVLTSTTRT----IEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTK 171 (372)
T ss_dssp TSEEEEEEE----CTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC------------
T ss_pred CceEecccc----cCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCH
Confidence 999987100 0001 269999999998888876 688888888766667889999999999983378988889999
Q ss_pred cccccCCcHHHHHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh
Q 037127 158 WEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES 237 (307)
Q Consensus 158 ~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~ 237 (307)
|+++.++++..+.|.++|...+....+.+++.++ .+.+..+|||||||+|.++..+++++|+++++++|+|.+++.+++
T Consensus 172 ~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~ 250 (372)
T 1fp1_D 172 YEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP 250 (372)
T ss_dssp --CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC
T ss_pred HHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhh
Confidence 9999999999999999999887777777888775 256778999999999999999999999999999999999988884
Q ss_pred cCCCeEEEecCCCCCCCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 037127 238 DLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK 304 (307)
Q Consensus 238 ~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~ 304 (307)
.++|+++.+|+++++|.+|+|+++++||+|+++++.++|++++++|+| ||+++|.|.+.++..
T Consensus 251 -~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~ 313 (372)
T 1fp1_D 251 -LSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSP---NGKVIIVEFILPEEP 313 (372)
T ss_dssp -CTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEECSSC
T ss_pred -cCCCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCC
Confidence 467999999999988889999999999999999999999999999999 999999999988764
No 10
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.6e-42 Score=316.74 Aligned_cols=266 Identities=25% Similarity=0.394 Sum_probs=241.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCC
Q 037127 14 EAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRN 93 (307)
Q Consensus 14 ~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~ 93 (307)
++...+++++.|++.+++|++++++|||+.|.. +|.|++|||+++|+ +++.++|+|++|++.|+|++.+
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~--~~~t~~ela~~~~~---~~~~l~r~Lr~L~~~g~l~~~~------ 75 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES--GIDSDETLAAAVGS---DAERIHRLMRLLVAFEIFQGDT------ 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCceEecC------
Confidence 567889999999999999999999999999975 79999999999999 7899999999999999999875
Q ss_pred CCCCCCeeecChhcchhhcCCCCChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHHHHHHH
Q 037127 94 NNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNE 173 (307)
Q Consensus 94 ~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~~~f~~ 173 (307)
+++|++|+.++.|. +++.++.+++.+..++.+ ..|.+|+++++++. ++|+..+|.++|+++.++++..+.|.+
T Consensus 76 ----~~~y~~t~~s~~l~-~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~ 148 (334)
T 2ip2_A 76 ----RDGYANTPTSHLLR-DVEGSFRDMVLFYGEEFH-AAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLL 148 (334)
T ss_dssp ----TTEEEECHHHHTTS-SSTTCSHHHHHHHTTHHH-HHTTTHHHHHHHCC-CHHHHHHSSCHHHHHHHCHHHHHHHHH
T ss_pred ----CCeEecCHHHHHHh-CCCccHHHHHHHhcCchh-hHHHHHHHHHhcCC-ChhhhhcCCCHHHHHhhChHHHHHHHH
Confidence 58999999999888 777788998887765444 88999999999987 689888899999999999999999999
Q ss_pred HHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEec
Q 037127 174 AMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGG 247 (307)
Q Consensus 174 ~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~ 247 (307)
+| ..+....+.+++.++ +.+ .+|||||||+|.++..+++.+|+.+++++|+|.+++.+++ ..+||+++.+
T Consensus 149 ~m-~~~~~~~~~~~~~~~--~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~ 224 (334)
T 2ip2_A 149 AM-KASNLAFHEIPRLLD--FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGG 224 (334)
T ss_dssp HH-GGGHHHHHHHHHHSC--CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEES
T ss_pred HH-HHHHHHHHHHHHhCC--CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecC
Confidence 99 877777788888887 566 8999999999999999999999999999999888888775 3579999999
Q ss_pred CCCCCCCC-ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 037127 248 DMFEAIPP-ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK 304 (307)
Q Consensus 248 d~~~~~p~-~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~ 304 (307)
|+++++|. ||+|++++++|+|+++++.++|++++++|+| ||+++|.|.+.+++.
T Consensus 225 d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~ 279 (334)
T 2ip2_A 225 DMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAG---DGRVVVIERTISASE 279 (334)
T ss_dssp CTTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSS
T ss_pred CCCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCC
Confidence 99997774 9999999999999999999999999999999 999999999987654
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=3.8e-42 Score=317.92 Aligned_cols=271 Identities=18% Similarity=0.234 Sum_probs=230.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 8 HDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 8 ~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
.+.++.++...+++++.|++.+++|++++++|||+.|+..++|+|++|||+++|+ +++.++|||++|++.|+|+++
T Consensus 8 ~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~---~~~~l~rlLr~l~~~g~l~~~- 83 (363)
T 3dp7_A 8 EQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGL---TRYAAQVLLEASLTIGTILLE- 83 (363)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEE-
T ss_pred CchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCeEec-
Confidence 4567889999999999999999999999999999999974579999999999999 789999999999999999886
Q ss_pred cCCCCCCCCCCCeeecChhcchhhcCCCCChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcC--CCccccccCCc
Q 037127 88 LNSSRNNNDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHG--KSFWEYAGDEP 165 (307)
Q Consensus 88 ~~~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g--~~~~~~~~~~~ 165 (307)
+++|++|+.++.|+++++ ...++.+. .+..++.|.+|+++++++. .++...+| .++|+++.+++
T Consensus 84 ----------~~~y~~t~~s~~L~~~~~--~~~~~~~~-~~~~~~~~~~L~~~lr~g~-~~~~~~~g~~~~~~~~~~~~~ 149 (363)
T 3dp7_A 84 ----------EDRYVLAKAGWFLLNDKM--ARVNMEFN-HDVNYQGLFHLEEALLNGR-PEGLKVFGEWPTIYEGLSQLP 149 (363)
T ss_dssp ----------TTEEEECHHHHHHHHCHH--HHHHHHHH-HHTTHHHHTTHHHHHHHSS-CGGGGGTCCCSSHHHHGGGSC
T ss_pred ----------CCEEecccchHHhhCCCc--ccchheee-cHHhhhhHHHHHHHHhcCC-CccccccCchHhHHHHHhhCH
Confidence 489999999998887653 22233332 3457899999999999997 56777777 68999999999
Q ss_pred HHHHH----HHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh----
Q 037127 166 KINNF----FNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES---- 237 (307)
Q Consensus 166 ~~~~~----f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~---- 237 (307)
+..+. |+.+|.... ...++..+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.+++
T Consensus 150 ~~~~~~~~~f~~~~~~~~---~~~~l~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~ 224 (363)
T 3dp7_A 150 EQVQKSWFGFDHFYSDQS---FGKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAG 224 (363)
T ss_dssp HHHHHHHHHHHHHTTCCC---CHHHHHHHG--GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhhh---HHHHHHHhc--ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHh
Confidence 87763 566655432 123444443 35678999999999999999999999999999999999998886
Q ss_pred --cCCCeEEEecCCCCC---CC-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 037127 238 --DLANLKYVGGDMFEA---IP-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK 304 (307)
Q Consensus 238 --~~~rv~~~~~d~~~~---~p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~ 304 (307)
..+||+|+.+|++++ +| .||+|+++++||+|+++++.++|++++++|+| ||+++|+|.+.+++.
T Consensus 225 ~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~ 294 (363)
T 3dp7_A 225 LSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGK---DSKVYIMETLWDRQR 294 (363)
T ss_dssp CTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCT---TCEEEEEECCTTSCS
T ss_pred cCcccceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCC---CcEEEEEeeccCCcc
Confidence 236899999999984 66 59999999999999999999999999999999 999999999988754
No 12
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=3e-40 Score=306.06 Aligned_cols=271 Identities=22% Similarity=0.355 Sum_probs=237.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCC
Q 037127 12 LLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSS 91 (307)
Q Consensus 12 ~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~ 91 (307)
..+....+++++.+++.+++|++++++|||+.|.. +|.|++|||+++|+ +++.++|+|++|++.|+|++..
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~eLA~~~g~---~~~~l~r~Lr~L~~~Gll~~~~---- 83 (374)
T 1qzz_A 13 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDT---HPQALSRLVRHLTVVGVLEGGE---- 83 (374)
T ss_dssp CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEECCC----
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCEEEeC----
Confidence 35567789999999999999999999999999964 79999999999999 7899999999999999999864
Q ss_pred CCCCCCCC--eeecChhcchhhcCCCCChHHHHHHhcCcchh-hhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHH
Q 037127 92 RNNNDEEQ--GYVLTNASKLLLKDSPLSVTPLLQAVLDPILL-SPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKIN 168 (307)
Q Consensus 92 ~~~~~~~~--~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~ 168 (307)
++ +|++|+.++.+.++++.++..++.+..++..+ ..|..|+++++++. ++|...+|.++|+++..+++..
T Consensus 84 ------~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~ 156 (374)
T 1qzz_A 84 ------KQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALA 156 (374)
T ss_dssp ------C-CCCCEECTTGGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHH
T ss_pred ------CCCeEEEEChHHHhhcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHhcCC-ChhhhhhCCCHHHHHhhChHHH
Confidence 45 99999999999888877888887765433456 88999999999987 5788888999999999999999
Q ss_pred HHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCe
Q 037127 169 NFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANL 242 (307)
Q Consensus 169 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv 242 (307)
+.|..+|........+.+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++ ..++|
T Consensus 157 ~~f~~~~~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v 234 (374)
T 1qzz_A 157 DSFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRV 234 (374)
T ss_dssp HHHHHTCGGGSTTTTHHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTE
T ss_pred HHHHHHHHHhhHhHHHHHHHhCC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCce
Confidence 99999998877666677888877 67788999999999999999999999999999999889988876 34589
Q ss_pred EEEecCCCCCCCC-ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee--ecCCC
Q 037127 243 KYVGGDMFEAIPP-ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM--MRENK 303 (307)
Q Consensus 243 ~~~~~d~~~~~p~-~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~--~~~~~ 303 (307)
+|+.+|+++++|. ||+|++++++|+|+++++.++|++++++|+| ||+++|+|. +.+++
T Consensus 235 ~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~ 295 (374)
T 1qzz_A 235 TVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEP---GGRLLVLDRADVEGDG 295 (374)
T ss_dssp EEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCH-----
T ss_pred EEEeCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEechhhcCCC
Confidence 9999999987774 9999999999999999889999999999999 999999999 77654
No 13
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=3.6e-39 Score=297.45 Aligned_cols=262 Identities=22% Similarity=0.367 Sum_probs=232.6
Q ss_pred chhhHHHHHHHHHHHH-HHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 9 DTELLEAQAHVWNHIF-NFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 9 ~~~~~~~~~~l~~~~~-g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
++++.++..++++++. |++.+++|++++++|||+.|.. +|.|++|||+++|+ +++.++|||++|++.|+|++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~~~ 98 (359)
T 1x19_A 24 NNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINLED 98 (359)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred ccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCc---ChHHHHHHHHHHHhCCCeEeeC
Confidence 5677888899999996 8999999999999999999986 79999999999999 6899999999999999999973
Q ss_pred cCCCCCCCCCCCeeecChhcc-hhhcCCC---CChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccC
Q 037127 88 LNSSRNNNDEEQGYVLTNASK-LLLKDSP---LSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGD 163 (307)
Q Consensus 88 ~~~~~~~~~~~~~y~~t~~s~-~l~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~ 163 (307)
++|++|+.+. ++.++++ .++.+++.+. ....+..|..|+++++++.+ |+++.+
T Consensus 99 -----------~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~-----------~~~~~~ 155 (359)
T 1x19_A 99 -----------GKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN-----------FKGQVP 155 (359)
T ss_dssp -----------TEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC-----------CCCSSC
T ss_pred -----------CeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC-----------Cccccc
Confidence 6999999754 7777777 6888887765 34578899999999998762 677778
Q ss_pred CcH---HHHHHHHHHHhchh-hhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh--
Q 037127 164 EPK---INNFFNEAMASDAR-LATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES-- 237 (307)
Q Consensus 164 ~~~---~~~~f~~~m~~~~~-~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~-- 237 (307)
+++ ..+.|...|...+. ...+.+++.++ +.+..+|||||||+|.++..+++.+|+++++++|+|.+++.+++
T Consensus 156 ~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ 233 (359)
T 1x19_A 156 YPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENA 233 (359)
T ss_dssp SSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHhccchhHHHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHH
Confidence 888 99999999998887 77788888887 67788999999999999999999999999999999889888875
Q ss_pred ----cCCCeEEEecCCCC-CCCCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 238 ----DLANLKYVGGDMFE-AIPPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 238 ----~~~rv~~~~~d~~~-~~p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
..+||+++.+|+++ +.+++|+|++++++|+|+++++.++|++++++|+| ||+++|+|.+.++.
T Consensus 234 ~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~ 301 (359)
T 1x19_A 234 AEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDP 301 (359)
T ss_dssp HHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEECCCCT
T ss_pred HhcCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCC---CCEEEEEecccCCC
Confidence 35689999999998 56668999999999999999899999999999999 99999999988765
No 14
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=1.4e-39 Score=300.13 Aligned_cols=268 Identities=23% Similarity=0.417 Sum_probs=239.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCC
Q 037127 15 AQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNN 94 (307)
Q Consensus 15 ~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~ 94 (307)
...++++++.+++.+++|.+++++|||+.|.. +|.|++|||+++|+ +++.++|+|++|++.|+|++..
T Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~~~~~~------- 86 (360)
T 1tw3_A 19 DALRTLIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDT---RPEALLRLIRHLVAIGLLEEDA------- 86 (360)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE-------
T ss_pred chHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEecC-------
Confidence 35788999999999999999999999999964 79999999999999 6899999999999999999865
Q ss_pred CCCCCeeecChhcchhhcCCCCChHHHHHHhcCcc-hhhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHHHHHHH
Q 037127 95 NDEEQGYVLTNASKLLLKDSPLSVTPLLQAVLDPI-LLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNE 173 (307)
Q Consensus 95 ~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~~~f~~ 173 (307)
+++|++|+.++.|+++++.++..++.+...+. .+..|..|.+.++++. ++|+..+|.++|+++..+++....|..
T Consensus 87 ---~g~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~p~~~~~f~~ 162 (360)
T 1tw3_A 87 ---PGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDS 162 (360)
T ss_dssp ---TTEEEECTTGGGGSTTSTTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHH
T ss_pred ---CCeEEeCHHHHHHhcCCchhHHHHHHHhcCchhHHHHHHHHHHHHHcCC-CHHHHhcCCCHHHHHHhChHHHHHHHH
Confidence 58999999999999888778888876654333 5678899999999987 578888899999999999999999999
Q ss_pred HHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEec
Q 037127 174 AMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGG 247 (307)
Q Consensus 174 ~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~ 247 (307)
.|...+....+.+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++ ..++|+|+.+
T Consensus 163 ~~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~ 240 (360)
T 1tw3_A 163 LLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEG 240 (360)
T ss_dssp HHTTTTTTTTHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred HHHHHHHHhHHHHHHhCC--CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeC
Confidence 999877776777888887 67788999999999999999999999999999999888888876 3458999999
Q ss_pred CCCCCCCC-ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee-cCCC
Q 037127 248 DMFEAIPP-ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM-RENK 303 (307)
Q Consensus 248 d~~~~~p~-~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~-~~~~ 303 (307)
|+++++|. ||+|++.+++|+|+++++.++|++++++|+| ||+++|.|.+ .++.
T Consensus 241 d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~ 295 (360)
T 1tw3_A 241 DFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEP---GGRILIHERDDLHEN 295 (360)
T ss_dssp CTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEECCBCGGG
T ss_pred CCCCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEEEeccCCC
Confidence 99987774 9999999999999999989999999999999 9999999998 6654
No 15
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=6.1e-39 Score=295.01 Aligned_cols=266 Identities=17% Similarity=0.272 Sum_probs=227.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeecc
Q 037127 9 DTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTL 88 (307)
Q Consensus 9 ~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~ 88 (307)
++..++....+++++.+++.+++|++|+++|||++|. +|.|++|||+++|+ +++.++|||++|++.|+|++.
T Consensus 18 ~~~~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~---~~~t~~elA~~~~~---~~~~l~rlLr~L~~~gll~~~-- 89 (352)
T 3mcz_A 18 DKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQ---TGRTPAEVAASFGM---VEGKAAILLHALAALGLLTKE-- 89 (352)
T ss_dssp SCCCCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTT---SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhC---CCCCHHHHHHHhCc---ChHHHHHHHHHHHHCCCeEec--
Confidence 4445555666999999999999999999999999996 49999999999999 689999999999999999997
Q ss_pred CCCCCCCCCCCeeecChhcc-hhhcCCCCChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHH
Q 037127 89 NSSRNNNDEEQGYVLTNASK-LLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKI 167 (307)
Q Consensus 89 ~~~~~~~~~~~~y~~t~~s~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~ 167 (307)
+++|++|+.++ ++.++++.++..++.+. ...+..|.+|+++++++.+.+|+... ++..+++.
T Consensus 90 ---------~~~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~~------~~~~~~~~ 152 (352)
T 3mcz_A 90 ---------GDAFRNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQES------RFAHDTRA 152 (352)
T ss_dssp ---------TTEEEECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHHH------HTTTCHHH
T ss_pred ---------CCeeecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCccccc------ccccCHHH
Confidence 37899999998 56667777888887654 34678999999999999865554321 23568889
Q ss_pred HHHHHHHHHhchhhhHHHHHHhccccccC-CCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCC
Q 037127 168 NNFFNEAMASDARLATRVVIHKCKNVFEG-LNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLA 240 (307)
Q Consensus 168 ~~~f~~~m~~~~~~~~~~~~~~~~~~~~~-~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~ 240 (307)
.+.|..+|...... ...+++.++ +.+ ..+|||||||+|.++..+++.+|+++++++|+|.+++.+++ ..+
T Consensus 153 ~~~f~~~m~~~~~~-~~~~l~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~ 229 (352)
T 3mcz_A 153 RDAFNDAMVRLSQP-MVDVVSELG--VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGG 229 (352)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHTCG--GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHhhhhh-HHHHHHhCC--CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCC
Confidence 99999999874333 246788887 555 88999999999999999999999999999999988888875 346
Q ss_pred CeEEEecCCCCC---CC-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCCC
Q 037127 241 NLKYVGGDMFEA---IP-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKKG 305 (307)
Q Consensus 241 rv~~~~~d~~~~---~p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~~ 305 (307)
||+++.+|++++ .| +||+|++++++|+|+++++.++|++++++|+| ||+++|+|.+.++++.
T Consensus 230 ~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~ 295 (352)
T 3mcz_A 230 RVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKP---GGALLILTMTMNDDRV 295 (352)
T ss_dssp GEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEEECCCTTSS
T ss_pred ceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCC
Confidence 899999999984 45 49999999999999999999999999999999 9999999999887643
No 16
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=1.3e-38 Score=290.54 Aligned_cols=261 Identities=23% Similarity=0.312 Sum_probs=230.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCC
Q 037127 17 AHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNND 96 (307)
Q Consensus 17 ~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~ 96 (307)
..+++++.|++.+++|++++++|||+.|.. +|.|++|||+++|+ +++.++|||++|++.|+|++.
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~l~~~---------- 72 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ--GIESSQSLAQKCQT---SERGMRMLCDYLVIIGFMTKQ---------- 72 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT--SEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHhCC---CchHHHHHHHHHHhcCCeEec----------
Confidence 578999999999999999999999999986 79999999999999 689999999999999999875
Q ss_pred CCCeeecChhc-chhhcCCCCChHHHHHHhcCcchhhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHHHHHHHHH
Q 037127 97 EEQGYVLTNAS-KLLLKDSPLSVTPLLQAVLDPILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAM 175 (307)
Q Consensus 97 ~~~~y~~t~~s-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~~~f~~~m 175 (307)
+++|++|+.+ +.+.++++.++..++.+..++..+..|.+|+++++++. ++|+ + |+++.++++..+.|...|
T Consensus 73 -~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~-----~-~~~~~~~~~~~~~~~~~~ 144 (335)
T 2r3s_A 73 -AEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGG-TAIS-----S-EGTLSPEHPVWVQFAKAM 144 (335)
T ss_dssp -TTEEEECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTS-CCST-----T-TGGGSTTCTHHHHHHHHS
T ss_pred -CCEEecCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCC-CCCC-----C-cccccCCHHHHHHHHHHH
Confidence 5899999999 57888777788888888755467889999999999987 3443 3 888888999999999999
Q ss_pred HhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCC
Q 037127 176 ASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDM 249 (307)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~ 249 (307)
..........+++.+++.+.+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ ..+||+|+.+|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 224 (335)
T 2r3s_A 145 SPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSA 224 (335)
T ss_dssp GGGGHHHHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCT
T ss_pred HHHHhhhHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEeccc
Confidence 88877767778887772116778999999999999999999999999999999988888876 256899999999
Q ss_pred CC-CCC-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 250 FE-AIP-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 250 ~~-~~p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
++ +.| +||+|++++++|+|+++++.++|++++++|+| ||+++|+|...++.
T Consensus 225 ~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~ 277 (335)
T 2r3s_A 225 FEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAV---EGKVIVFDFIPNSD 277 (335)
T ss_dssp TTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCCCTT
T ss_pred ccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCC---CcEEEEEeecCCCC
Confidence 98 566 49999999999999999999999999999999 99999999998764
No 17
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.73 E-value=4.8e-17 Score=143.08 Aligned_cols=107 Identities=18% Similarity=0.285 Sum_probs=95.4
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHC--CCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCCCccEEEech
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAF--PNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIPPADAVVLKW 263 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p~~D~i~~~~ 263 (307)
..+..+|||||||+|.++..+++.+ |+++++++|+ +.+++.|++ ...+|+|+++|+.+ +.+.+|+|++..
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 3567899999999999999999986 5789999999 899999876 35689999999988 666899999999
Q ss_pred hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
+||++++++...+|++++++|+| ||+++|.|...+++
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~Lkp---GG~lii~e~~~~~~ 184 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFED 184 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCSS
T ss_pred eeeecCchhHhHHHHHHHHHcCC---CcEEEEEeccCCCC
Confidence 99999988888999999999999 99999999887654
No 18
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.67 E-value=1.2e-15 Score=140.93 Aligned_cols=216 Identities=7% Similarity=-0.006 Sum_probs=141.3
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcch-hhcCCCCC
Q 037127 39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKL-LLKDSPLS 117 (307)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~-l~~~~~~~ 117 (307)
|+|..| . +|.|+.|||+++|+ +++.+++||+.|.+.|+++.. ++ |++|+.++. +....+..
T Consensus 47 ~ll~~L-~--~~~t~~eLa~~~g~---~~~~v~~~L~~l~~~gll~~~-----------~~-~~lt~~~~~~l~~~~~~~ 108 (373)
T 2qm3_A 47 NVLSAV-L--ASDDIWRIVDLSEE---PLPLVVAILESLNELGYVTFE-----------DG-VKLTEKGEELVAEYGIGK 108 (373)
T ss_dssp HHHHHH-H--HCSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECS-----------SS-SEECHHHHHHHHHHTCCC
T ss_pred HHHHHh-c--CCCCHHHHHHHhCC---ChHHHHHHHHHHhhCCcEEEC-----------CC-EEECHHHHHHHHhcCccc
Confidence 788888 4 68999999999999 789999999999999999875 34 999998774 43322111
Q ss_pred hHHHHHH--hcCc----chhhhhhhHHHhhhcCCCChhhhhcCCCccccccCCcHHHHHHHHHHHhchhhhHHHHHHhcc
Q 037127 118 VTPLLQA--VLDP----ILLSPWLKLSTWFQSDDPAPFDMVHGKSFWEYAGDEPKINNFFNEAMASDARLATRVVIHKCK 191 (307)
Q Consensus 118 ~~~~~~~--~~~~----~~~~~~~~l~~~l~~~~~~~f~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~ 191 (307)
....+.. .... .+...|..+.+.++...... ..|+-....++.. .... . .... ..
T Consensus 109 ~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~--~~~~-------l--~~~~-~~ 169 (373)
T 2qm3_A 109 RYDFTCPHCQGKTVDLQAFADLLEQFREIVKDRPEPL-------HEFDQAYVTPETT--VARV-------I--LMHT-RG 169 (373)
T ss_dssp CCC------------CGGGHHHHHHHHHHHTTCCCCC-------GGGTCCCBCHHHH--HHHH-------H--HHHH-TT
T ss_pred cccccchhhcCCCcchhhhHHHHHHHHHHHhcCCccc-------hhcCCeecCHHHH--HHHH-------H--HHhh-cC
Confidence 1111100 0001 11123445555555432110 1111100011110 0000 0 0011 11
Q ss_pred ccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC-----CccEEE
Q 037127 192 NVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP-----PADAVV 260 (307)
Q Consensus 192 ~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p-----~~D~i~ 260 (307)
.....+||||| |+|.++..+++..|+.+++++|+ +.+++.+++ ..++|+++.+|+.+++| .||+|+
T Consensus 170 --~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi 246 (373)
T 2qm3_A 170 --DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFI 246 (373)
T ss_dssp --CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEE
T ss_pred --CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEE
Confidence 22467999999 99999999999988889999999 899998876 23389999999988433 499999
Q ss_pred echhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
+..+++... ...+|++++++|+| ||++++++...
T Consensus 247 ~~~p~~~~~---~~~~l~~~~~~Lkp---gG~~~~~~~~~ 280 (373)
T 2qm3_A 247 TDPPETLEA---IRAFVGRGIATLKG---PRCAGYFGITR 280 (373)
T ss_dssp ECCCSSHHH---HHHHHHHHHHTBCS---TTCEEEEEECT
T ss_pred ECCCCchHH---HHHHHHHHHHHccc---CCeEEEEEEec
Confidence 987765442 47899999999999 89777776654
No 19
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.66 E-value=1.7e-15 Score=130.24 Aligned_cols=105 Identities=19% Similarity=0.323 Sum_probs=93.6
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCC-CccEEEechhhccC
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIP-PADAVVLKWILHDW 268 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~~ 268 (307)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ...+++++++|+.+ +.+ .+|+|++..++|++
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 122 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHL 122 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGGS
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCccccC
Confidence 4568999999999999999999999999999999 888888887 23389999999988 444 59999999999999
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 269 NDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 269 ~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
++++...+|++++++|+| ||+++|.+...++
T Consensus 123 ~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~ 153 (234)
T 3dtn_A 123 EDEDKKELYKRSYSILKE---SGIFINADLVHGE 153 (234)
T ss_dssp CHHHHHHHHHHHHHHEEE---EEEEEEEEECBCS
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEEEecCCC
Confidence 998877899999999999 9999999987654
No 20
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.58 E-value=2.8e-14 Score=120.96 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=90.6
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCCCCC--CccEEEechhhccCC
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFEAIP--PADAVVLKWILHDWN 269 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~~~ 269 (307)
.....+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...+++++.+|+.+..+ .||+|++..++|+++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~ 121 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVP 121 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEEESCGGGSC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEEechhhcCC
Confidence 345679999999999999999998 679999999 888988887 44789999999988543 599999999999999
Q ss_pred hhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 270 DEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 270 ~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
+++...+|++++++|+| ||++++.+...+
T Consensus 122 ~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~ 150 (218)
T 3ou2_A 122 DDRFEAFWESVRSAVAP---GGVVEFVDVTDH 150 (218)
T ss_dssp HHHHHHHHHHHHHHEEE---EEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHcCC---CeEEEEEeCCCC
Confidence 98788999999999999 999999987653
No 21
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.58 E-value=3.5e-14 Score=125.63 Aligned_cols=102 Identities=15% Similarity=0.277 Sum_probs=90.6
Q ss_pred CCCeEEEecCCc---hHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCC------------C--C
Q 037127 196 GLNSLVDVGGAT---GTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEA------------I--P 254 (307)
Q Consensus 196 ~~~~vlDvGgG~---G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~------------~--p 254 (307)
+..+|||||||+ |.++..+.+.+|+.+++++|+ |.|++.+++ ..++++|+++|+.++ + .
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 999888889999999999999 899999887 347899999999862 2 2
Q ss_pred CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
.+|+|++..+||++++++...+|++++++|+| ||+++|.+...
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---GG~l~i~~~~~ 199 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAP---GSYLFMTSLVD 199 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCT---TCEEEEEEEBC
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCC---CcEEEEEEecC
Confidence 58999999999999998788999999999999 99999998765
No 22
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.58 E-value=1.3e-14 Score=126.91 Aligned_cols=112 Identities=17% Similarity=0.309 Sum_probs=93.5
Q ss_pred hHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC
Q 037127 182 ATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP 254 (307)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p 254 (307)
....+++.+. .....+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..++++++.+|+.+ +++
T Consensus 25 ~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~ 100 (260)
T 1vl5_A 25 DLAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT 100 (260)
T ss_dssp CHHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC
T ss_pred HHHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCC
Confidence 3455666555 55678999999999999999999875 8999999 888888876 23689999999987 555
Q ss_pred --CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 255 --PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 255 --~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
.||+|++..++|++++. ..+|++++++|+| ||++++.+...++
T Consensus 101 ~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~ 145 (260)
T 1vl5_A 101 DERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKK---GGQLLLVDNSAPE 145 (260)
T ss_dssp TTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEBCS
T ss_pred CCCEEEEEEhhhhHhcCCH--HHHHHHHHHHcCC---CCEEEEEEcCCCC
Confidence 49999999999999886 4899999999999 9999999887654
No 23
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.57 E-value=2.7e-14 Score=121.45 Aligned_cols=111 Identities=14% Similarity=0.273 Sum_probs=93.9
Q ss_pred HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCC-CCC-CccEEE
Q 037127 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFE-AIP-PADAVV 260 (307)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~-~~p-~~D~i~ 260 (307)
.+++.+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|+
T Consensus 36 ~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~ 111 (220)
T 3hnr_A 36 DILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIV 111 (220)
T ss_dssp HHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEE
T ss_pred HHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEE
Confidence 3444444 346779999999999999999997 679999999 888888887 34699999999988 444 599999
Q ss_pred echhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
+..++|++++.+...+|++++++|+| ||+++|.++..+.
T Consensus 112 ~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~ 150 (220)
T 3hnr_A 112 STYAFHHLTDDEKNVAIAKYSQLLNK---GGKIVFADTIFAD 150 (220)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEEECBSS
T ss_pred ECcchhcCChHHHHHHHHHHHHhcCC---CCEEEEEeccccC
Confidence 99999999998877799999999999 9999999876543
No 24
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.57 E-value=2.1e-14 Score=125.48 Aligned_cols=113 Identities=15% Similarity=0.307 Sum_probs=96.9
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCC--Cc
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIP--PA 256 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p--~~ 256 (307)
..+++.+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..++++++.+|+.+ +++ .|
T Consensus 45 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 45 KKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 44555554 5667899999999999999999987 679999999 888888887 12799999999988 554 49
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
|+|++..++|+++.++...+|++++++|+| ||+++|.++..+.
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~ 164 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLKP---TGTLLITDYCATE 164 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEESC
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcCC---CCEEEEEEeccCC
Confidence 999999999999877788999999999999 9999999987664
No 25
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.55 E-value=1.4e-14 Score=123.66 Aligned_cols=100 Identities=14% Similarity=0.195 Sum_probs=87.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC--CccEEEechhhcc
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP--PADAVVLKWILHD 267 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~ 267 (307)
...+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .+|+|++..++|.
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 467999999999999999999877 8999999 888888876 34789999999988 444 4999999999888
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 268 WNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
+..++...+|++++++|+| ||++++.++..
T Consensus 116 ~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~ 145 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKP---SGKFIMYFTDL 145 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEE---EEEEEEEEECH
T ss_pred CCHHHHHHHHHHHHHHcCC---CcEEEEEecCh
Confidence 8877778999999999999 99999988753
No 26
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.55 E-value=4.1e-14 Score=123.20 Aligned_cols=112 Identities=9% Similarity=0.060 Sum_probs=93.6
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC-
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP- 254 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p- 254 (307)
..++..+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..++++++.+|+.+ +.+
T Consensus 26 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 26 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 44555555 5667899999999999999999988 678999999 888888876 23689999999987 333
Q ss_pred CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
.||+|++..++|++++. ..+|++++++|+| ||++++.++.+...
T Consensus 103 ~fD~V~~~~~~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~ 146 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGF--AGAEELLAQSLKP---GGIMLIGEPYWRQL 146 (256)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEE---EEEEEEEEEEETTC
T ss_pred CCCEEEECCChHhcCCH--HHHHHHHHHHcCC---CeEEEEecCcccCC
Confidence 49999999999999865 5889999999999 99999999876543
No 27
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.54 E-value=3e-14 Score=120.63 Aligned_cols=96 Identities=22% Similarity=0.314 Sum_probs=84.7
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEechhhccC
Q 037127 199 SLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKWILHDW 268 (307)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~ 268 (307)
+|||||||+|.++..+++. |+.+++++|+ +.+++.+++ ..++++++.+|+.+ +++ .||+|++..++|++
T Consensus 46 ~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~ 124 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFW 124 (219)
T ss_dssp EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGC
T ss_pred EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhhc
Confidence 9999999999999999998 8889999999 888888876 35689999999988 555 49999999999999
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 269 NDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 269 ~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
++. ..+|++++++|+| ||+++|.+...
T Consensus 125 ~~~--~~~l~~~~~~L~p---gG~l~~~~~~~ 151 (219)
T 3dlc_A 125 EDV--ATAFREIYRILKS---GGKTYIGGGFG 151 (219)
T ss_dssp SCH--HHHHHHHHHHEEE---EEEEEEEECCS
T ss_pred cCH--HHHHHHHHHhCCC---CCEEEEEeccC
Confidence 765 5899999999999 99999987543
No 28
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.54 E-value=2.3e-14 Score=124.58 Aligned_cols=112 Identities=20% Similarity=0.345 Sum_probs=93.5
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c--CCCeEEEecCCCC-CCC--Cc
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D--LANLKYVGGDMFE-AIP--PA 256 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~--~~rv~~~~~d~~~-~~p--~~ 256 (307)
..++..+. ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ . ..+++++.+|+.+ +++ .|
T Consensus 83 ~~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T 1xtp_A 83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence 34555554 4567899999999999999999886 457999999 888888887 2 2689999999987 444 49
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
|+|++.+++|++++++...+|++++++|+| ||+++|.+....
T Consensus 160 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~ 201 (254)
T 1xtp_A 160 DLIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCST 201 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC-
T ss_pred EEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCC
Confidence 999999999999988889999999999999 999999987543
No 29
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.54 E-value=6.6e-14 Score=124.78 Aligned_cols=104 Identities=18% Similarity=0.294 Sum_probs=90.3
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEech
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKW 263 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~ 263 (307)
+.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..++++++.+|+.+ +++ .||+|++..
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 158 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD 158 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecc
Confidence 5667899999999999999999987 469999999 788888765 34789999999988 554 499999999
Q ss_pred hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
++|++++. ..+|++++++|+| ||++++.++..+..
T Consensus 159 ~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~ 193 (297)
T 2o57_A 159 AFLHSPDK--LKVFQECARVLKP---RGVMAITDPMKEDG 193 (297)
T ss_dssp CGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEECTT
T ss_pred hhhhcCCH--HHHHHHHHHHcCC---CeEEEEEEeccCCC
Confidence 99999884 6999999999999 99999999876653
No 30
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.54 E-value=4.4e-14 Score=119.37 Aligned_cols=102 Identities=7% Similarity=0.008 Sum_probs=86.0
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--c---------------CCCeEEEecCCCC-CC-
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--D---------------LANLKYVGGDMFE-AI- 253 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~---------------~~rv~~~~~d~~~-~~- 253 (307)
..+..+|||+|||+|..+..|++. +.+++++|+ +.+++.|++ . ..+++|+++|+.+ +.
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 456789999999999999999998 569999999 889998876 1 3589999999998 33
Q ss_pred --CCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 254 --PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 254 --p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
..||+|++..++|++++++..+++++++++|+| ||+++++....
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp---gG~~~l~~~~~ 143 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEY 143 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESS
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEec
Confidence 259999999999999987778899999999999 89855554433
No 31
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.53 E-value=8.3e-14 Score=122.46 Aligned_cols=111 Identities=21% Similarity=0.225 Sum_probs=94.4
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC-
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP- 254 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p- 254 (307)
+.+++.+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..++++++.+|+.+ +++
T Consensus 51 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 51 DEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 45566665 5667899999999999999999987 679999999 788887765 34689999999988 554
Q ss_pred -CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 255 -PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 255 -~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
.||+|++..++|++++. ..+|++++++|+| ||+++|.+.....
T Consensus 128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~ 171 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDR--GRALREMARVLRP---GGTVAIADFVLLA 171 (273)
T ss_dssp TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEE---EEEEEEEEEEESS
T ss_pred CCccEEEEechhhhCCCH--HHHHHHHHHHcCC---CeEEEEEEeeccC
Confidence 49999999999999876 5899999999999 9999999987654
No 32
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.53 E-value=7.1e-14 Score=118.85 Aligned_cols=102 Identities=12% Similarity=0.037 Sum_probs=86.6
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c-----C----CCeEEEecCCCC-CCC--CccEE
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D-----L----ANLKYVGGDMFE-AIP--PADAV 259 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~-----~----~rv~~~~~d~~~-~~p--~~D~i 259 (307)
..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ . . .+++++.+|+.. +.+ .||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 34567999999999999999999998899999999 888888876 1 1 289999999865 332 59999
Q ss_pred EechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 260 VLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 260 ~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
++..++|++++++...+|++++++|+| ||.+++...
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~ 142 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQP---KIVIVTTPN 142 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEEB
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcCC---CEEEEEccC
Confidence 999999999988888999999999999 886665543
No 33
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.53 E-value=5.6e-14 Score=119.62 Aligned_cols=100 Identities=11% Similarity=0.083 Sum_probs=85.3
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c-----C----CCeEEEecCCCC-CCC--CccEEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D-----L----ANLKYVGGDMFE-AIP--PADAVV 260 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~-----~----~rv~~~~~d~~~-~~p--~~D~i~ 260 (307)
.+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++ . . .+++++.+|+.. +.+ .||+|+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 107 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT 107 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence 4567999999999999999999999899999999 888888876 1 1 289999999965 332 599999
Q ss_pred echhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
+..++|++++++..++|++++++|+| ||.+++..
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~~i~~~ 141 (219)
T 3jwg_A 108 VIEVIEHLDENRLQAFEKVLFEFTRP---QTVIVSTP 141 (219)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEE
T ss_pred EHHHHHhCCHHHHHHHHHHHHHhhCC---CEEEEEcc
Confidence 99999999988888999999999999 88555443
No 34
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.52 E-value=1.1e-13 Score=122.77 Aligned_cols=113 Identities=12% Similarity=0.181 Sum_probs=93.8
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCCCc
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPPA 256 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~~ 256 (307)
..+++.+. ..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.+++ ..++++++.+|+.+....|
T Consensus 54 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~f 130 (287)
T 1kpg_A 54 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 130 (287)
T ss_dssp HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCe
Confidence 44555555 56678999999999999999997775 49999999 888888876 2468999999996522469
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
|+|++..++|++++++...+|++++++|+| ||+++|.+...+.
T Consensus 131 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~ 173 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLH 173 (287)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECC
T ss_pred eEEEEeCchhhcChHHHHHHHHHHHHhcCC---CCEEEEEEecCCC
Confidence 999999999999876678999999999999 9999999887653
No 35
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.51 E-value=2.4e-13 Score=122.24 Aligned_cols=121 Identities=9% Similarity=0.024 Sum_probs=96.6
Q ss_pred HHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEec
Q 037127 175 MASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGG 247 (307)
Q Consensus 175 m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~ 247 (307)
+........+.+++.+. .+.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..++++++.+
T Consensus 97 ~~~~~~~~~~~l~~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 174 (312)
T 3vc1_A 97 LHRLESAQAEFLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVC 174 (312)
T ss_dssp HHHHHHHHHHHHHTTSC-CCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred hhhHHHHHHHHHHHHhc-cCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence 33333333344555544 14567899999999999999999986 579999999 888888876 3468999999
Q ss_pred CCCC-CCC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 248 DMFE-AIP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 248 d~~~-~~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
|+.+ +++ .||+|++..++|+++ ...+|++++++|+| ||++++.+....+.
T Consensus 175 d~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~ 227 (312)
T 3vc1_A 175 NMLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKV---GGRYVTITGCWNPR 227 (312)
T ss_dssp CTTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEE---EEEEEEEEEEECTT
T ss_pred ChhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCC---CcEEEEEEcccccc
Confidence 9988 554 499999999999995 46999999999999 99999999877653
No 36
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.51 E-value=7.9e-14 Score=118.48 Aligned_cols=112 Identities=19% Similarity=0.313 Sum_probs=94.5
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC-
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP- 254 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p- 254 (307)
..++..+. ..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.+++ ..+++++..+|+.+ +.+
T Consensus 27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence 44555555 5667899999999999999999997 7889999999 888888876 33589999999987 444
Q ss_pred -CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 255 -PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 255 -~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
.||+|++..++|++++. ..+|++++++|+| ||+++|.+....+
T Consensus 105 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~ 148 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELSEP--LKFLEELKRVAKP---FAYLAIIDWKKEE 148 (219)
T ss_dssp SCEEEEEEESCGGGCSSH--HHHHHHHHHHEEE---EEEEEEEEECSSC
T ss_pred CCeeEEEeehhhhhcCCH--HHHHHHHHHHhCC---CeEEEEEEecccc
Confidence 49999999999999865 5899999999999 9999999876554
No 37
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.51 E-value=1.6e-13 Score=122.74 Aligned_cols=113 Identities=14% Similarity=0.177 Sum_probs=95.2
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCCCc
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPPA 256 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~~ 256 (307)
..+++.+. ..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.+++ ..++++++.+|+.+....|
T Consensus 62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 138 (302)
T 3hem_A 62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 138 (302)
T ss_dssp HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCc
Confidence 44566555 56778999999999999999999987 79999999 888888876 3458999999997652359
Q ss_pred cEEEechhhccCCh-------hHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 257 DAVVLKWILHDWND-------EECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 257 D~i~~~~vLh~~~~-------~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
|+|++..++|++++ +....+|++++++|+| ||+++|.+...++
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~ 188 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPD 188 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT---TCEEEEEEEECCC
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCC---CcEEEEEEEeccC
Confidence 99999999999954 5567999999999999 9999999887654
No 38
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.51 E-value=1.2e-13 Score=119.42 Aligned_cols=110 Identities=18% Similarity=0.393 Sum_probs=92.2
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC--
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP-- 254 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p-- 254 (307)
..++..+. ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..++++++.+|+.+ +++
T Consensus 11 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 86 (239)
T 1xxl_A 11 GLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 86 (239)
T ss_dssp HHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred chHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence 44455555 56778999999999999999999865 8999999 888888775 23689999999987 444
Q ss_pred CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
.||+|++..++|+|++. ..+|++++++|+| ||++++.+...++
T Consensus 87 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~ 129 (239)
T 1xxl_A 87 SFDIITCRYAAHHFSDV--RKAVREVARVLKQ---DGRFLLVDHYAPE 129 (239)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECBCS
T ss_pred cEEEEEECCchhhccCH--HHHHHHHHHHcCC---CcEEEEEEcCCCC
Confidence 49999999999999875 5899999999999 9999999887654
No 39
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.51 E-value=1.7e-13 Score=119.99 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=86.1
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC-CccEEEech-hhccCCh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP-PADAVVLKW-ILHDWND 270 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p-~~D~i~~~~-vLh~~~~ 270 (307)
.+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|++.. ++|++++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCC
Confidence 456899999999999999999984 47999999 88999888745589999999988 444 599999998 9999865
Q ss_pred -hHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 271 -EECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 271 -~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
++...+|++++++|+| ||+++|.+...+
T Consensus 127 ~~~~~~~l~~~~~~L~p---gG~l~i~~~~~~ 155 (263)
T 3pfg_A 127 QAELDAALERFAAHVLP---DGVVVVEPWWFP 155 (263)
T ss_dssp HHHHHHHHHHHHHTEEE---EEEEEECCCCCT
T ss_pred HHHHHHHHHHHHHhcCC---CcEEEEEeccCh
Confidence 5677999999999999 888888654433
No 40
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.50 E-value=1.6e-13 Score=114.52 Aligned_cols=111 Identities=15% Similarity=0.190 Sum_probs=92.3
Q ss_pred HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC-Cc
Q 037127 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP-PA 256 (307)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p-~~ 256 (307)
.+++.+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++++++.+|+.+ +.+ .+
T Consensus 23 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 98 (199)
T 2xvm_A 23 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQY 98 (199)
T ss_dssp HHHHHTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCE
T ss_pred HHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCc
Confidence 3444444 345679999999999999999987 679999999 888888776 23479999999987 334 59
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
|+|++..++|++++++...+|++++++|+| ||+++|++...++
T Consensus 99 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~ 141 (199)
T 2xvm_A 99 DFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTA 141 (199)
T ss_dssp EEEEEESCGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCS
T ss_pred eEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEEeeccC
Confidence 999999999999977788999999999999 9999998876654
No 41
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.50 E-value=9.1e-14 Score=120.34 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=89.7
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCC-CCC-------CccEEEec
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE-AIP-------PADAVVLK 262 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~-~~p-------~~D~i~~~ 262 (307)
..+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ...+++++++|+.+ +.+ .+|+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 34567899999999999999999987 7999999 888988887 45589999999998 222 28999999
Q ss_pred hhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 263 WILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 263 ~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
.++|++++++...+|++++++|+| ||+++|++...+
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~ 167 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGK---QGAMYLIELGTG 167 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTT---TCEEEEEEECTT
T ss_pred chhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCcc
Confidence 999999988788999999999999 999999997654
No 42
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.50 E-value=1e-13 Score=122.98 Aligned_cols=101 Identities=17% Similarity=0.224 Sum_probs=89.0
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC-CccEEEechhh
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP-PADAVVLKWIL 265 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p-~~D~i~~~~vL 265 (307)
..+..+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 456789999999999999999999995 89999999 788888776 33489999999998 444 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
|++++. ..+|++++++|+| ||++++.++.
T Consensus 100 ~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~ 128 (284)
T 3gu3_A 100 LHMTTP--ETMLQKMIHSVKK---GGKIICFEPH 128 (284)
T ss_dssp GGCSSH--HHHHHHHHHTEEE---EEEEEEEECC
T ss_pred hcCCCH--HHHHHHHHHHcCC---CCEEEEEecc
Confidence 999886 4899999999999 9999999876
No 43
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.50 E-value=2.5e-13 Score=122.34 Aligned_cols=113 Identities=14% Similarity=0.220 Sum_probs=95.1
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCCCc
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPPA 256 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~~ 256 (307)
..+++.+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..++++++.+|+.+....|
T Consensus 80 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 156 (318)
T 2fk8_A 80 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 156 (318)
T ss_dssp HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCc
Confidence 44555555 5667899999999999999999987 569999999 888888876 2367999999987632469
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
|+|++..++|++++++...+|++++++|+| ||+++|.++..+.
T Consensus 157 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~ 199 (318)
T 2fk8_A 157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYH 199 (318)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCC
T ss_pred CEEEEeChHHhcCHHHHHHHHHHHHHhcCC---CcEEEEEEeccCC
Confidence 999999999999877778999999999999 9999999887654
No 44
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.50 E-value=9.4e-14 Score=121.69 Aligned_cols=98 Identities=10% Similarity=0.148 Sum_probs=83.9
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccEEEechhhccCCh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAVVLKWILHDWND 270 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~ 270 (307)
....+|||||||+|.++..|++.+ .+++++|+ +.+++.|+ ..++|+++.+|+.+ +++ .+|+|++..++|.++.
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~-~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~ 114 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQAL-RHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDL 114 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCC-CCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCH
T ss_pred CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhh-hcCCceeehhhhhhhcccCCcccEEEEeeehhHhhH
Confidence 345689999999999999999885 57999999 88998888 56789999999987 566 4999999999987754
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 271 EECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 271 ~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
+ +++++++++||| ||+++++....+
T Consensus 115 ~---~~~~e~~rvLkp---gG~l~~~~~~~~ 139 (257)
T 4hg2_A 115 D---RFWAELRRVARP---GAVFAAVTYGLT 139 (257)
T ss_dssp H---HHHHHHHHHEEE---EEEEEEEEECCC
T ss_pred H---HHHHHHHHHcCC---CCEEEEEECCCC
Confidence 3 789999999999 999999886544
No 45
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.49 E-value=2e-13 Score=117.96 Aligned_cols=98 Identities=18% Similarity=0.367 Sum_probs=85.1
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC---CCC--CccEEEechhhcc
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE---AIP--PADAVVLKWILHD 267 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~---~~p--~~D~i~~~~vLh~ 267 (307)
+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ +++++.+|+.+ +++ .||+|++..++|+
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~---~~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~ 113 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEG---KFNVVKSDAIEYLKSLPDKYLDGVMISHFVEH 113 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHT---TSEEECSCHHHHHHTSCTTCBSEEEEESCGGG
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHh---hcceeeccHHHHhhhcCCCCeeEEEECCchhh
Confidence 456689999999999999999998 567999999 788888873 39999999876 444 4999999999999
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 268 WNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
+++++...+|++++++|+| ||++++..+.
T Consensus 114 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~ 142 (240)
T 3dli_A 114 LDPERLFELLSLCYSKMKY---SSYIVIESPN 142 (240)
T ss_dssp SCGGGHHHHHHHHHHHBCT---TCCEEEEEEC
T ss_pred CCcHHHHHHHHHHHHHcCC---CcEEEEEeCC
Confidence 9988788999999999999 9999987764
No 46
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.49 E-value=2.6e-13 Score=118.09 Aligned_cols=103 Identities=14% Similarity=0.158 Sum_probs=88.1
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEech
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKW 263 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~ 263 (307)
+.+..+|||||||+|.++..+++.+|. +++++|+ +.+++.+++ ..++++++.+|+.+ +++ .||+|++..
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence 455679999999999999999999986 9999999 888888776 35679999999977 444 499999999
Q ss_pred hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
++|+++ ...+|++++++|+| ||++++.++.+...
T Consensus 123 ~l~~~~---~~~~l~~~~~~L~p---gG~l~~~~~~~~~~ 156 (257)
T 3f4k_A 123 AIYNIG---FERGMNEWSKYLKK---GGFIAVSEASWFTS 156 (257)
T ss_dssp CSCCCC---HHHHHHHHHTTEEE---EEEEEEEEEEESSS
T ss_pred hHhhcC---HHHHHHHHHHHcCC---CcEEEEEEeeccCC
Confidence 999984 25899999999999 99999999875443
No 47
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.49 E-value=1.7e-13 Score=120.79 Aligned_cols=101 Identities=20% Similarity=0.399 Sum_probs=89.1
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCC--CccEEEechh
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIP--PADAVVLKWI 264 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p--~~D~i~~~~v 264 (307)
+.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++..+|+.+ +.+ .||+|++..+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 45678999999999999999999999999999999 888888876 24689999999987 444 4999999999
Q ss_pred hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
+|++++.+ .+|++++++|+| ||++++.+..
T Consensus 115 l~~~~~~~--~~l~~~~~~L~p---gG~l~~~~~~ 144 (276)
T 3mgg_A 115 LEHLQSPE--EALKSLKKVLKP---GGTITVIEGD 144 (276)
T ss_dssp GGGCSCHH--HHHHHHHHHEEE---EEEEEEEEEC
T ss_pred hhhcCCHH--HHHHHHHHHcCC---CcEEEEEEcC
Confidence 99998874 899999999999 9999998854
No 48
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.49 E-value=7.7e-14 Score=117.25 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=87.7
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccEEEechhhccCChhH
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAVVLKWILHDWNDEE 272 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~~~ 272 (307)
..+|||||||+|.++..+++. +.+++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|++..++|+++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 678999999999999999998 568999999 88898888756689999999987 444 499999999999998777
Q ss_pred HHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 273 CVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 273 ~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
...+|++++++|+| ||+++|.+...+
T Consensus 120 ~~~~l~~~~~~L~p---gG~l~i~~~~~~ 145 (203)
T 3h2b_A 120 LPDALVALRMAVED---GGGLLMSFFSGP 145 (203)
T ss_dssp HHHHHHHHHHTEEE---EEEEEEEEECCS
T ss_pred HHHHHHHHHHHcCC---CcEEEEEEccCC
Confidence 78999999999999 899998876543
No 49
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.48 E-value=2.7e-13 Score=121.09 Aligned_cols=99 Identities=19% Similarity=0.215 Sum_probs=85.9
Q ss_pred cCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh----c---CCCeEEEecCCCC-CC--------CCc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES----D---LANLKYVGGDMFE-AI--------PPA 256 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~----~---~~rv~~~~~d~~~-~~--------p~~ 256 (307)
.+..+|||||||+|.++..+++.+ +..+++++|+ +.+++.+++ . ..+++|+++|+.+ +. ..|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 467899999999999999999987 8899999999 888888876 2 6799999999987 32 249
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
|+|++..++|++ + ...+|++++++|+| ||+++|++..
T Consensus 115 D~V~~~~~l~~~-~--~~~~l~~~~~~Lkp---gG~l~i~~~~ 151 (299)
T 3g5t_A 115 DMITAVECAHWF-D--FEKFQRSAYANLRK---DGTIAIWGYA 151 (299)
T ss_dssp EEEEEESCGGGS-C--HHHHHHHHHHHEEE---EEEEEEEEEE
T ss_pred eEEeHhhHHHHh-C--HHHHHHHHHHhcCC---CcEEEEEecC
Confidence 999999999999 4 46899999999999 9999985544
No 50
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.48 E-value=1.9e-13 Score=119.07 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=92.4
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCC--CccEEE
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP--PADAVV 260 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p--~~D~i~ 260 (307)
..++..+. .....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++..++++++.+|+.+..+ .||+|+
T Consensus 23 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 100 (259)
T 2p35_A 23 RDLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLY 100 (259)
T ss_dssp HHHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEE
T ss_pred HHHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEE
Confidence 34555555 45678999999999999999999999999999999 88888887656789999999987223 499999
Q ss_pred echhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
+..++|++++. ..+|++++++|+| ||++++..+.
T Consensus 101 ~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~ 134 (259)
T 2p35_A 101 ANAVFQWVPDH--LAVLSQLMDQLES---GGVLAVQMPD 134 (259)
T ss_dssp EESCGGGSTTH--HHHHHHHGGGEEE---EEEEEEEEEC
T ss_pred EeCchhhCCCH--HHHHHHHHHhcCC---CeEEEEEeCC
Confidence 99999999765 5899999999999 8999988753
No 51
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.48 E-value=2.1e-13 Score=119.71 Aligned_cols=103 Identities=12% Similarity=0.109 Sum_probs=88.8
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEech
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKW 263 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~ 263 (307)
+.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..++++++.+|+.+ +++ .||+|++..
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 456789999999999999999998 7889999999 888888876 34789999999987 444 499999999
Q ss_pred hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
++|+++ . ..+|++++++|+| ||++++.+..+...
T Consensus 123 ~~~~~~-~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~ 156 (267)
T 3kkz_A 123 AIYNIG-F--ERGLNEWRKYLKK---GGYLAVSECSWFTD 156 (267)
T ss_dssp CGGGTC-H--HHHHHHHGGGEEE---EEEEEEEEEEESSS
T ss_pred CceecC-H--HHHHHHHHHHcCC---CCEEEEEEeeecCC
Confidence 999993 2 5889999999999 99999999876543
No 52
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.47 E-value=9.9e-14 Score=123.77 Aligned_cols=100 Identities=15% Similarity=0.211 Sum_probs=84.9
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c-----C----------------------------
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D-----L---------------------------- 239 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~-----~---------------------------- 239 (307)
....+|||||||+|.++..+++.+|..+++++|+ +.+++.|++ . .
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 3578999999999999999999999999999999 888888876 1 1
Q ss_pred -----------------------------CCeEEEecCCCCCC--------CCccEEEechhhccC----ChhHHHHHHH
Q 037127 240 -----------------------------ANLKYVGGDMFEAI--------PPADAVVLKWILHDW----NDEECVKILK 278 (307)
Q Consensus 240 -----------------------------~rv~~~~~d~~~~~--------p~~D~i~~~~vLh~~----~~~~~~~~L~ 278 (307)
.+|+|..+|+.... ..||+|++..+++++ +++...++|+
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 58999999998632 259999999999554 7778889999
Q ss_pred HHHHhccCCCCCcEEEEEe
Q 037127 279 KCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 279 ~~~~~L~p~~~gg~lli~e 297 (307)
+++++|+| ||+++|..
T Consensus 205 ~~~~~Lkp---GG~lil~~ 220 (292)
T 3g07_A 205 RIYRHLRP---GGILVLEP 220 (292)
T ss_dssp HHHHHEEE---EEEEEEEC
T ss_pred HHHHHhCC---CcEEEEec
Confidence 99999999 88877753
No 53
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.46 E-value=4e-13 Score=116.85 Aligned_cols=105 Identities=17% Similarity=0.097 Sum_probs=87.8
Q ss_pred HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCC-CCC--CccE
Q 037127 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE-AIP--PADA 258 (307)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~-~~p--~~D~ 258 (307)
.+...++ ..+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+
T Consensus 35 ~l~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 35 ELKKMLP--DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHHTTCC--CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHhhh--ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 3444444 346789999999999999999998664 8999999 888988887 45789999999987 444 5999
Q ss_pred EEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 259 VVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 259 i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
|++..++|++++. ..+|++++++|+| ||++++..
T Consensus 112 v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~ 145 (253)
T 3g5l_A 112 VLSSLALHYIASF--DDICKKVYINLKS---SGSFIFSV 145 (253)
T ss_dssp EEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEE
T ss_pred EEEchhhhhhhhH--HHHHHHHHHHcCC---CcEEEEEe
Confidence 9999999999764 5899999999999 89988864
No 54
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.46 E-value=2.1e-13 Score=117.42 Aligned_cols=100 Identities=17% Similarity=0.148 Sum_probs=86.5
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC--CccEEEechhhcc
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--PADAVVLKWILHD 267 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~ 267 (307)
..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++ ...+++|+.+|+.+..+ .||+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 35999999999999999987 4778999999 888888876 23569999999998433 5999999999999
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 268 WNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
+++++...+|++++++|+| ||++++++....
T Consensus 145 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~ 175 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKP---DGELITLMYPIT 175 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEE---EEEEEEEECCCS
T ss_pred CCHHHHHHHHHHHHHHCCC---CcEEEEEEeccc
Confidence 9987788999999999999 999999877554
No 55
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.46 E-value=2.4e-13 Score=117.29 Aligned_cols=98 Identities=16% Similarity=0.297 Sum_probs=84.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCCCCC--CccEEEechhhccCChh
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFEAIP--PADAVVLKWILHDWNDE 271 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~~~~~ 271 (307)
+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ...+++++.+|+.+..+ .||+|++.++||++++.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 119 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDP 119 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSSH
T ss_pred CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcCH
Confidence 456899999999999999999876 7899999 888888887 33389999999987433 49999999999999876
Q ss_pred HHHHHHHHHH-HhccCCCCCcEEEEEeeec
Q 037127 272 ECVKILKKCK-EAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 272 ~~~~~L~~~~-~~L~p~~~gg~lli~e~~~ 300 (307)
..+|++++ ++|+| ||+++|.++..
T Consensus 120 --~~~l~~~~~~~Lkp---gG~l~i~~~~~ 144 (250)
T 2p7i_A 120 --VALLKRINDDWLAE---GGRLFLVCPNA 144 (250)
T ss_dssp --HHHHHHHHHTTEEE---EEEEEEEEECT
T ss_pred --HHHHHHHHHHhcCC---CCEEEEEcCCh
Confidence 48999999 99999 99999987643
No 56
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.46 E-value=2.2e-13 Score=120.45 Aligned_cols=107 Identities=18% Similarity=0.202 Sum_probs=89.9
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC-CccEEE
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP-PADAVV 260 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p-~~D~i~ 260 (307)
..+++.+. ..+..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++..+++++..+|+.+ +.+ .||+|+
T Consensus 47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 122 (279)
T 3ccf_A 47 EDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVF 122 (279)
T ss_dssp CHHHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEE
T ss_pred HHHHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEE
Confidence 44555544 45677999999999999999999 6889999999 88898888644789999999987 444 499999
Q ss_pred echhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
+..++|++++. ..+|++++++|+| ||++++..+.
T Consensus 123 ~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~~~~ 156 (279)
T 3ccf_A 123 SNAMLHWVKEP--EAAIASIHQALKS---GGRFVAEFGG 156 (279)
T ss_dssp EESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEC
T ss_pred EcchhhhCcCH--HHHHHHHHHhcCC---CcEEEEEecC
Confidence 99999999876 4899999999999 8999887654
No 57
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.46 E-value=1.8e-13 Score=118.29 Aligned_cols=102 Identities=18% Similarity=0.360 Sum_probs=88.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c----CCCeEEEecCCCC-CCC--CccEEEechhhc
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D----LANLKYVGGDMFE-AIP--PADAVVLKWILH 266 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~----~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh 266 (307)
+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ . ..+++++.+|+.+ +.+ .||+|++..++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 47899999999999999999887 568999999 888888876 2 3469999999876 333 499999999999
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
++++++...+|++++++|+| ||+++|.+...+
T Consensus 158 ~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~ 189 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQ 189 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBS
T ss_pred hCCHHHHHHHHHHHHHhcCC---CeEEEEEEccCC
Confidence 99998888999999999999 999999987654
No 58
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.45 E-value=4.6e-13 Score=115.36 Aligned_cols=106 Identities=15% Similarity=0.174 Sum_probs=86.9
Q ss_pred HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCC-CCC--CccE
Q 037127 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE-AIP--PADA 258 (307)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~-~~p--~~D~ 258 (307)
.+...++ ..+..+|||||||+|.++..+++... .+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .+|+
T Consensus 34 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 110 (243)
T 3bkw_A 34 ALRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDL 110 (243)
T ss_dssp HHHHHSC--CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceE
Confidence 3444444 34577999999999999999998732 38999999 888888887 34579999999987 444 4999
Q ss_pred EEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 259 VVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 259 i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
|++..++|++++. ..+|++++++|+| ||++++...
T Consensus 111 v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~ 145 (243)
T 3bkw_A 111 AYSSLALHYVEDV--ARLFRTVHQALSP---GGHFVFSTE 145 (243)
T ss_dssp EEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEE
T ss_pred EEEeccccccchH--HHHHHHHHHhcCc---CcEEEEEeC
Confidence 9999999999864 5899999999999 899988764
No 59
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.45 E-value=1.2e-13 Score=123.79 Aligned_cols=106 Identities=11% Similarity=0.104 Sum_probs=89.8
Q ss_pred ccCCCeEEEecCCchHHHHHHH-HHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC-CccEEEech
Q 037127 194 FEGLNSLVDVGGATGTVAKAIA-KAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP-PADAVVLKW 263 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~-~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p-~~D~i~~~~ 263 (307)
+.+..+|||||||+|.++..++ ..+|+.+++++|+ +.+++.+++ ..++++++++|+.+ +.+ .||+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4567899999999999999996 6789999999999 888888876 24569999999988 444 599999999
Q ss_pred hhccCChhH-HHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 264 ILHDWNDEE-CVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 264 vLh~~~~~~-~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
++|++++.+ ...+|++++++|+| ||+++|.+...++
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~ 232 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKP---GGALVTSFLTPPP 232 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEECCCCCT
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCC
Confidence 999997654 45699999999999 9999998866543
No 60
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.45 E-value=4.5e-13 Score=117.03 Aligned_cols=101 Identities=6% Similarity=-0.064 Sum_probs=86.0
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c---------------------CCCeEEEecCCCC
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D---------------------LANLKYVGGDMFE 251 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~---------------------~~rv~~~~~d~~~ 251 (307)
.+..+|||+|||+|..+..|++. +.+++++|+ +.+++.|++ . ..+|+|+++|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 35679999999999999999987 679999999 888888864 2 2689999999998
Q ss_pred -CC---CCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 252 -AI---PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 252 -~~---p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
+. ..||+|++..++|.+++++...++++++++|+| ||+++++....
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp---GG~l~l~~~~~ 194 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK---EFQYLVAVLSY 194 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEEC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC---CeEEEEEEEec
Confidence 33 359999999999999888778999999999999 89987665543
No 61
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.45 E-value=7.2e-13 Score=113.86 Aligned_cols=103 Identities=21% Similarity=0.218 Sum_probs=86.6
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC-CccEEEe-chhhccCCh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP-PADAVVL-KWILHDWND 270 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p-~~D~i~~-~~vLh~~~~ 270 (307)
.+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++..++++++.+|+.+ +.+ .+|+|++ ..++|++++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4567999999999999999999976 8999999 88998888755679999999987 344 5999995 559988754
Q ss_pred -hHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 271 -EECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 271 -~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
++...+|++++++|+| ||++++.+...++
T Consensus 117 ~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~ 146 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEP---GGVVVVEPWWFPE 146 (239)
T ss_dssp HHHHHHHHHHHHHTEEE---EEEEEECCCCCTT
T ss_pred HHHHHHHHHHHHHhcCC---CeEEEEEeccCcc
Confidence 5678999999999999 8999887766554
No 62
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.45 E-value=5.7e-13 Score=118.10 Aligned_cols=112 Identities=20% Similarity=0.206 Sum_probs=92.5
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC-Cc
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP-PA 256 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p-~~ 256 (307)
..+++.+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..-+++++.+|+.+ +.+ .|
T Consensus 110 ~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f 185 (286)
T 3m70_A 110 GDVVDAAK--IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY 185 (286)
T ss_dssp HHHHHHHH--HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCE
T ss_pred HHHHHHhh--ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCc
Confidence 34444444 346779999999999999999998 569999999 788888876 23389999999988 334 59
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
|+|++..++|++++++...+|++++++|+| ||+++|+.....+
T Consensus 186 D~i~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~ 228 (286)
T 3m70_A 186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNV---GGYNLIVAAMSTD 228 (286)
T ss_dssp EEEEECSSGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCS
T ss_pred cEEEEccchhhCCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCC
Confidence 999999999999988888999999999999 8998887765544
No 63
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.44 E-value=6e-13 Score=112.86 Aligned_cols=100 Identities=13% Similarity=0.220 Sum_probs=85.1
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCCCC--CccEEEechhhcc
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEAIP--PADAVVLKWILHD 267 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~ 267 (307)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ...+++++.+|+.+..+ .||+|++..++|+
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 3456799999999999999999985 58999999 888888887 34589999999988333 5999999999999
Q ss_pred CCh-hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 268 WND-EECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 268 ~~~-~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
+++ ++..++|++++++|+| ||++++..+
T Consensus 127 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~ 155 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAP---GGHLVFGSA 155 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCEEEEEec
Confidence 997 4556899999999999 899888654
No 64
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.43 E-value=6.9e-13 Score=114.28 Aligned_cols=99 Identities=15% Similarity=0.224 Sum_probs=86.0
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCC-CCC--CccEEEechhhccC
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE-AIP--PADAVVLKWILHDW 268 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~ 268 (307)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++.+++|++
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 45679999999999999999998 668999999 888888886 46789999999988 554 49999999999999
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 269 NDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 269 ~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
++. ..+|++++++|+| ||+++|.+...
T Consensus 130 ~~~--~~~l~~~~~~L~p---gG~l~i~~~~~ 156 (242)
T 3l8d_A 130 EEP--LRALNEIKRVLKS---DGYACIAILGP 156 (242)
T ss_dssp SCH--HHHHHHHHHHEEE---EEEEEEEEECT
T ss_pred cCH--HHHHHHHHHHhCC---CeEEEEEEcCC
Confidence 776 4889999999999 89999887543
No 65
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.43 E-value=2.1e-13 Score=111.29 Aligned_cols=100 Identities=21% Similarity=0.331 Sum_probs=86.4
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCC--CccEEEechhhccCCh
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP--PADAVVLKWILHDWND 270 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~~~~ 270 (307)
..+..+|||||||+|.++..+++.+. +++++|+ +.+++.+++..+++++..+| .+++ .||+|++..++|++++
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~~l~~~~~ 90 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFANSFHDMDD 90 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEESCSTTCSC
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEccchhcccC
Confidence 45677999999999999999999873 8999999 88888887656789999999 4343 5999999999999976
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 271 EECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 271 ~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
. ..+|++++++|+| ||++++.+....+
T Consensus 91 ~--~~~l~~~~~~L~p---gG~l~~~~~~~~~ 117 (170)
T 3i9f_A 91 K--QHVISEVKRILKD---DGRVIIIDWRKEN 117 (170)
T ss_dssp H--HHHHHHHHHHEEE---EEEEEEEEECSSC
T ss_pred H--HHHHHHHHHhcCC---CCEEEEEEcCccc
Confidence 5 5899999999999 9999999877654
No 66
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.43 E-value=6.7e-13 Score=118.50 Aligned_cols=110 Identities=15% Similarity=0.242 Sum_probs=88.4
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cC----CCeEEEecCCCC-C
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DL----ANLKYVGGDMFE-A 252 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~----~rv~~~~~d~~~-~ 252 (307)
...++..+. ....+|||||||+|.++..+++. +.+++++|+ +.+++.+++ .. .+++++++|+.+ +
T Consensus 72 ~~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 146 (299)
T 3g2m_A 72 AREFATRTG---PVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA 146 (299)
T ss_dssp HHHHHHHHC---CCCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred HHHHHHhhC---CCCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence 344454444 33458999999999999999998 578999999 888888876 22 789999999998 4
Q ss_pred CC-CccEEEec-hhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 253 IP-PADAVVLK-WILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 253 ~p-~~D~i~~~-~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
.+ .||+|++. .++|++++++...+|++++++|+| ||+++|.....
T Consensus 147 ~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~ 193 (299)
T 3g2m_A 147 LDKRFGTVVISSGSINELDEADRRGLYASVREHLEP---GGKFLLSLAMS 193 (299)
T ss_dssp CSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEE---EEEEEEEEECC
T ss_pred cCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCC---CcEEEEEeecC
Confidence 44 49988865 678878877788999999999999 88888876554
No 67
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.43 E-value=1.2e-12 Score=114.63 Aligned_cols=107 Identities=16% Similarity=0.249 Sum_probs=88.6
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccEE
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAV 259 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i 259 (307)
+.+.+.++ ..+..+|||||||+|.++..+++ |+.+++++|+ +.+++.+++ ..+++|+.+|+.+ +++ .||+|
T Consensus 24 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~d~~~~~~~~~~fD~v 98 (261)
T 3ege_A 24 NAIINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVV-HPQVEWFTGYAENLALPDKSVDGV 98 (261)
T ss_dssp HHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCC-CTTEEEECCCTTSCCSCTTCBSEE
T ss_pred HHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHh-ccCCEEEECchhhCCCCCCCEeEE
Confidence 34444444 45678999999999999999998 6789999999 888888874 2399999999987 554 49999
Q ss_pred EechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 260 VLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 260 ~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
++.+++|++++. ..+|++++++|+ ||+++|++...+
T Consensus 99 ~~~~~l~~~~~~--~~~l~~~~~~Lk----gG~~~~~~~~~~ 134 (261)
T 3ege_A 99 ISILAIHHFSHL--EKSFQEMQRIIR----DGTIVLLTFDIR 134 (261)
T ss_dssp EEESCGGGCSSH--HHHHHHHHHHBC----SSCEEEEEECGG
T ss_pred EEcchHhhccCH--HHHHHHHHHHhC----CcEEEEEEcCCc
Confidence 999999999775 589999999999 489999887543
No 68
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.41 E-value=9.2e-13 Score=110.94 Aligned_cols=104 Identities=11% Similarity=0.105 Sum_probs=86.6
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC--CccEEEechhhc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP--PADAVVLKWILH 266 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh 266 (307)
.+..+|||||||+|.++..++.. ++.+++++|. +.+++.+++ ...+++++.+|+.+ +.+ .+|+|++..++|
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 45679999999999985555443 4679999999 888888876 34689999999987 444 499999999999
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
+++.++..++|++++++|+| ||++++.+...++
T Consensus 101 ~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~ 133 (209)
T 2p8j_A 101 HMRKNDVKEAIDEIKRVLKP---GGLACINFLTTKD 133 (209)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEEEEETTS
T ss_pred hCCHHHHHHHHHHHHHHcCC---CcEEEEEEecccc
Confidence 99877788999999999999 9999998877654
No 69
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.41 E-value=2e-12 Score=112.64 Aligned_cols=96 Identities=15% Similarity=0.185 Sum_probs=83.2
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC--CccEEEechhh
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP--PADAVVLKWIL 265 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p--~~D~i~~~~vL 265 (307)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...+++++.+|+.+ +++ .||+|++..++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 456789999999999999999987 578999999 888888876 25789999999977 444 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 266 HDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
|++++. ..+|++++++|+| ||++++.
T Consensus 115 ~~~~~~--~~~l~~~~~~L~p---gG~l~~~ 140 (263)
T 2yqz_A 115 HLVPDW--PKVLAEAIRVLKP---GGALLEG 140 (263)
T ss_dssp GGCTTH--HHHHHHHHHHEEE---EEEEEEE
T ss_pred hhcCCH--HHHHHHHHHHCCC---CcEEEEE
Confidence 999865 5899999999999 8998887
No 70
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.41 E-value=8e-13 Score=111.73 Aligned_cols=101 Identities=17% Similarity=0.098 Sum_probs=85.2
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC-CccEEEechhhccCCh
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP-PADAVVLKWILHDWND 270 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~~~~ 270 (307)
+.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++.. ++++..+|+.+ +.+ .||+|++..++|++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 117 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL-GRPVRTMLFHQLDAIDAYDAVWAHACLLHVPR 117 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH-TSCCEECCGGGCCCCSCEEEEEECSCGGGSCH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc-CCceEEeeeccCCCCCcEEEEEecCchhhcCH
Confidence 345679999999999999999987 568999999 88888887521 67888899877 322 4999999999999998
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 271 EECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 271 ~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
++...+|++++++|+| ||++++.....
T Consensus 118 ~~~~~~l~~~~~~Lkp---gG~l~~~~~~~ 144 (211)
T 3e23_A 118 DELADVLKLIWRALKP---GGLFYASYKSG 144 (211)
T ss_dssp HHHHHHHHHHHHHEEE---EEEEEEEEECC
T ss_pred HHHHHHHHHHHHhcCC---CcEEEEEEcCC
Confidence 8888999999999999 89988875543
No 71
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.41 E-value=8e-13 Score=117.07 Aligned_cols=97 Identities=15% Similarity=0.221 Sum_probs=84.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC--CC--CccEEEechh
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA--IP--PADAVVLKWI 264 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~--~p--~~D~i~~~~v 264 (307)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++++++.+|+.+. .+ .||+|++..+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 4679999999999999999998 679999999 888888876 227899999999873 33 4999999999
Q ss_pred hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
+|++++. ..+|++++++|+| ||+++|.++.
T Consensus 146 l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~ 175 (285)
T 4htf_A 146 LEWVADP--RSVLQTLWSVLRP---GGVLSLMFYN 175 (285)
T ss_dssp GGGCSCH--HHHHHHHHHTEEE---EEEEEEEEEB
T ss_pred hhcccCH--HHHHHHHHHHcCC---CeEEEEEEeC
Confidence 9999876 5899999999999 8999988764
No 72
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.40 E-value=2e-12 Score=110.61 Aligned_cols=101 Identities=14% Similarity=0.239 Sum_probs=86.0
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c---------CCCeEEEecCCCC-CCC--CccEEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D---------LANLKYVGGDMFE-AIP--PADAVV 260 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~---------~~rv~~~~~d~~~-~~p--~~D~i~ 260 (307)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ . ..++++..+|+.+ +.+ .||+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 45679999999999999999998 679999999 888888876 1 2368999999987 444 499999
Q ss_pred echhhccCChh-HHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 261 LKWILHDWNDE-ECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 261 ~~~vLh~~~~~-~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
+..++|++++. +...+|++++++|+| ||++++.+...
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~ 144 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKP---GAYLYLVEFGQ 144 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCC---CeEEEEEECCc
Confidence 99999999764 466899999999999 99999998754
No 73
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.40 E-value=1.2e-12 Score=120.38 Aligned_cols=113 Identities=15% Similarity=0.126 Sum_probs=91.0
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-------------c-CCCeEEEecC
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-------------D-LANLKYVGGD 248 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-------------~-~~rv~~~~~d 248 (307)
..++..+. .....+|||||||+|..+..++..++..+++++|+ +.+++.|++ . .++|+|+++|
T Consensus 163 ~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 163 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 44555555 66778999999999999999999887767999999 667666653 1 3789999999
Q ss_pred CCC-CC----CCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 037127 249 MFE-AI----PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK 304 (307)
Q Consensus 249 ~~~-~~----p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~ 304 (307)
+++ ++ +.+|+|++..+++ ++ +....|+++++.|+| ||+|++.|.+.+++.
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F-~p--dl~~aL~Ei~RvLKP---GGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF-GP--EVDHQLKERFANMKE---GGRIVSSKPFAPLNF 295 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC-CH--HHHHHHHHHHTTSCT---TCEEEESSCSSCTTC
T ss_pred ccCCccccccCCccEEEEccccc-Cc--hHHHHHHHHHHcCCC---CcEEEEeecccCCCC
Confidence 998 43 3699999887764 33 346778899999999 999999999998765
No 74
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.40 E-value=1.5e-12 Score=120.43 Aligned_cols=103 Identities=14% Similarity=0.230 Sum_probs=89.4
Q ss_pred cCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchhc---------C----CCeEEEecCCCC-------C
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLESD---------L----ANLKYVGGDMFE-------A 252 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~---------~----~rv~~~~~d~~~-------~ 252 (307)
.+..+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++. . ++++|+.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 456799999999999999999987 7889999999 8888888761 2 699999999987 4
Q ss_pred CC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 253 IP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 253 ~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
++ .||+|++..++|++++. ..+|++++++|+| ||++++.+.....
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~ 208 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRD---GGELYFSDVYADR 208 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEESS
T ss_pred CCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCC---CCEEEEEEecccc
Confidence 44 49999999999999875 5899999999999 9999999876653
No 75
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.39 E-value=5.1e-12 Score=106.30 Aligned_cols=105 Identities=16% Similarity=0.218 Sum_probs=87.5
Q ss_pred HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCC---CC
Q 037127 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAI---PP 255 (307)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~---p~ 255 (307)
.++..+. ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ..++++++.+|+.+.. +.
T Consensus 31 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 31 VTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred HHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence 3445555 56678999999999999999999999999999999 888888876 3478999999997743 45
Q ss_pred ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
+|+|++...++ +...+++++.+.|+| ||++++....
T Consensus 109 ~D~i~~~~~~~-----~~~~~l~~~~~~Lkp---gG~l~~~~~~ 144 (204)
T 3e05_A 109 PDRVFIGGSGG-----MLEEIIDAVDRRLKS---EGVIVLNAVT 144 (204)
T ss_dssp CSEEEESCCTT-----CHHHHHHHHHHHCCT---TCEEEEEECB
T ss_pred CCEEEECCCCc-----CHHHHHHHHHHhcCC---CeEEEEEecc
Confidence 99999998886 235899999999999 9999987654
No 76
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.39 E-value=2.3e-12 Score=106.84 Aligned_cols=99 Identities=18% Similarity=0.248 Sum_probs=85.9
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccEEEec-hhhccCC
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAVVLK-WILHDWN 269 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~-~vLh~~~ 269 (307)
.+..+|||||||+|.++..+++. +.+++++|. +.+++.+++...+++++.+|+.+ +.+ .+|+|++. .++|+++
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 46779999999999999999987 568999999 88888888755679999999988 454 49999998 8999998
Q ss_pred hhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 270 DEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 270 ~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
+++...+|++++++|+| ||++++...
T Consensus 123 ~~~~~~~l~~~~~~l~~---~G~l~~~~~ 148 (195)
T 3cgg_A 123 EDGREPALANIHRALGA---DGRAVIGFG 148 (195)
T ss_dssp HHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCC---CCEEEEEeC
Confidence 88788999999999999 888888654
No 77
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.39 E-value=2.5e-12 Score=113.08 Aligned_cols=113 Identities=12% Similarity=0.119 Sum_probs=89.1
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hH------HHHhchh------cCCCeEEEecC-
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PH------VVNGLES------DLANLKYVGGD- 248 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~------~~~~a~~------~~~rv~~~~~d- 248 (307)
..+++.+. ..+..+|||||||+|.++..+++.+ |+.+++++|+ +. +++.+++ ..++++++.+|
T Consensus 33 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 110 (275)
T 3bkx_A 33 LAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN 110 (275)
T ss_dssp HHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 34555555 5667899999999999999999996 7789999999 43 7777765 23689999998
Q ss_pred CCC---CCC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 249 MFE---AIP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 249 ~~~---~~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
+.. +++ .||+|++..++|++++.+ .+++.++..++| ||++++.+...+..
T Consensus 111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~---gG~l~~~~~~~~~~ 165 (275)
T 3bkx_A 111 LSDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAV---CDHVDVAEWSMQPT 165 (275)
T ss_dssp TTTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTT---CSEEEEEEECSSCS
T ss_pred hhhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCC---CCEEEEEEecCCCC
Confidence 543 233 499999999999999875 477777777777 99999999877643
No 78
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.38 E-value=5.4e-12 Score=109.48 Aligned_cols=97 Identities=22% Similarity=0.334 Sum_probs=81.1
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC-CccEEEec-hhhc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP-PADAVVLK-WILH 266 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p-~~D~i~~~-~vLh 266 (307)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .+|+|++. ..+|
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~ 117 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIM 117 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGG
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCchh
Confidence 45679999999999999999987 679999999 888888876 34579999999987 444 59999986 4667
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 267 DWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
+++.++...+|++++++|+| ||.+++-
T Consensus 118 ~~~~~~~~~~l~~~~~~L~p---gG~li~~ 144 (252)
T 1wzn_A 118 YFDEEDLRKLFSKVAEALKP---GGVFITD 144 (252)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCC---CeEEEEe
Confidence 77777788999999999999 8887653
No 79
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.38 E-value=2.1e-12 Score=105.86 Aligned_cols=103 Identities=15% Similarity=0.172 Sum_probs=83.6
Q ss_pred HHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCC----C
Q 037127 186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAI----P 254 (307)
Q Consensus 186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~----p 254 (307)
++..+. .....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++ ++.+|..+.+ .
T Consensus 17 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 17 AISALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 344444 45677999999999999999999999999999999 778888876 23488 8889987633 3
Q ss_pred CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
.||+|++..++|+ ..+++++++.|+| ||++++.+...
T Consensus 94 ~~D~i~~~~~~~~------~~~l~~~~~~L~~---gG~l~~~~~~~ 130 (178)
T 3hm2_A 94 NPDVIFIGGGLTA------PGVFAAAWKRLPV---GGRLVANAVTV 130 (178)
T ss_dssp CCSEEEECC-TTC------TTHHHHHHHTCCT---TCEEEEEECSH
T ss_pred CCCEEEECCcccH------HHHHHHHHHhcCC---CCEEEEEeecc
Confidence 5999999999986 3789999999999 99999877543
No 80
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.37 E-value=9.3e-13 Score=116.98 Aligned_cols=101 Identities=16% Similarity=0.134 Sum_probs=84.6
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---------cCCCeEEEecCCCC-C---CC--Ccc
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---------DLANLKYVGGDMFE-A---IP--PAD 257 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---------~~~rv~~~~~d~~~-~---~p--~~D 257 (307)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...++.+..+|+.+ + ++ .||
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD 132 (293)
T 3thr_A 55 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 132 (293)
T ss_dssp HTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeE
Confidence 345679999999999999999998 448999999 788888864 13578899999877 3 34 599
Q ss_pred EEEec-hhhccCCh-----hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 258 AVVLK-WILHDWND-----EECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 258 ~i~~~-~vLh~~~~-----~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
+|++. +++|++++ ++...+|++++++|+| ||++++..+.
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~ 177 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVIDHRN 177 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE---EEEEEEEEEC
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC---CeEEEEEeCC
Confidence 99998 89999988 6678999999999999 8998887643
No 81
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.37 E-value=2.6e-12 Score=108.40 Aligned_cols=102 Identities=15% Similarity=0.189 Sum_probs=85.7
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCC--CccEEEechhhcc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIP--PADAVVLKWILHD 267 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~ 267 (307)
.+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ..+++++..+|+.+ +++ .+|+|++..++|.
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 45678999999999999999998665 8999999 888888876 23689999999987 544 4999999999876
Q ss_pred CC-------------hhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 268 WN-------------DEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 268 ~~-------------~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
+. .++...+|++++++|+| ||++++.++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~ 162 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP---GGRFISMTSAA 162 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcC---CCEEEEEeCCC
Confidence 54 34567999999999999 99999988654
No 82
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.36 E-value=3.6e-12 Score=109.76 Aligned_cols=95 Identities=15% Similarity=0.161 Sum_probs=81.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC-CccEEEech-hhcc
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP-PADAVVLKW-ILHD 267 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p-~~D~i~~~~-vLh~ 267 (307)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .+|+|++.. ++|+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5679999999999999999998 568999999 888888876 23389999999987 444 599999998 9999
Q ss_pred CCh-hHHHHHHHHHHHhccCCCCCcEEEE
Q 037127 268 WND-EECVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 268 ~~~-~~~~~~L~~~~~~L~p~~~gg~lli 295 (307)
+++ ++...+|++++++|+| ||++++
T Consensus 115 ~~~~~~~~~~l~~~~~~L~p---gG~l~~ 140 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKE---GGVFIF 140 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEE---EEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCC---CcEEEE
Confidence 854 5678999999999999 888876
No 83
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.36 E-value=1.9e-12 Score=114.28 Aligned_cols=97 Identities=16% Similarity=0.254 Sum_probs=81.5
Q ss_pred CCCeEEEecCCchH----HHHHHHHHCC----CCeEEEecc-hHHHHhchh-c---------------------C-----
Q 037127 196 GLNSLVDVGGATGT----VAKAIAKAFP----NLECTDFDL-PHVVNGLES-D---------------------L----- 239 (307)
Q Consensus 196 ~~~~vlDvGgG~G~----~~~~l~~~~p----~~~~~~~Dl-~~~~~~a~~-~---------------------~----- 239 (307)
+..+|+|+|||+|. .+..|++..| +.++++.|+ +.+++.|++ . .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35689999999998 5666777655 468999999 889998876 1 0
Q ss_pred ---------CCeEEEecCCCC-CCC---CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127 240 ---------ANLKYVGGDMFE-AIP---PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 240 ---------~rv~~~~~d~~~-~~p---~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli 295 (307)
.+|+|..+|+.+ ++| .+|+|+|+++|++++++...+++++++++|+| ||.+++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p---gG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence 369999999998 454 59999999999999998888999999999999 787776
No 84
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.35 E-value=7.3e-12 Score=111.12 Aligned_cols=101 Identities=14% Similarity=0.107 Sum_probs=85.2
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CC-C--CccEEEech
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AI-P--PADAVVLKW 263 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~-p--~~D~i~~~~ 263 (307)
.+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ...+++++.+|+.+ +. + .||+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 55679999999999999998886 4568999999 888888876 12579999999987 44 2 499999999
Q ss_pred hhcc--CChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 264 ILHD--WNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 264 vLh~--~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
++|+ .+.++...+|++++++|+| ||++++..+.
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~ 176 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTVPS 176 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEEC
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEECC
Confidence 9998 5667778999999999999 8999987754
No 85
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.34 E-value=6.7e-12 Score=109.87 Aligned_cols=107 Identities=13% Similarity=0.071 Sum_probs=82.7
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCC-CeEEEecCCCC----CC-CC
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLA-NLKYVGGDMFE----AI-PP 255 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~-rv~~~~~d~~~----~~-p~ 255 (307)
..++..+. ..+..+|||||||+|.++..++++ +.+++++|+ +.+++.+++ ... .+.....++.. .. ..
T Consensus 35 ~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 35 ENDIFLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp HHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTC
T ss_pred HHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCC
Confidence 44555555 566789999999999999999987 568999999 889999887 222 23333333322 11 25
Q ss_pred ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
||+|++..++|+|+.++....|++++++| | ||++++.-.
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-P---GG~l~lS~~ 149 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-G---SGTVRASVK 149 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-T---TSEEEEEEE
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-c---CcEEEEEec
Confidence 99999999999999888889999999999 9 899987643
No 86
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.33 E-value=5.5e-12 Score=106.47 Aligned_cols=95 Identities=16% Similarity=0.148 Sum_probs=81.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCC-eEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccEEEechhhccCCh
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNL-ECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAVVLKWILHDWND 270 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~ 270 (307)
+..+|||||||+|.++..+ +. +++++|+ +.+++.+++...+++++.+|+.+ +.+ .+|+|++..++|++++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 110 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED 110 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC
Confidence 6779999999999999887 44 8999999 88888888644789999999987 444 4999999999999986
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 271 EECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 271 ~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
. .++|++++++|+| ||+++|.++..
T Consensus 111 ~--~~~l~~~~~~L~p---gG~l~i~~~~~ 135 (211)
T 2gs9_A 111 V--ERVLLEARRVLRP---GGALVVGVLEA 135 (211)
T ss_dssp H--HHHHHHHHHHEEE---EEEEEEEEECT
T ss_pred H--HHHHHHHHHHcCC---CCEEEEEecCC
Confidence 5 5899999999999 89999987643
No 87
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.32 E-value=7e-12 Score=107.91 Aligned_cols=95 Identities=23% Similarity=0.361 Sum_probs=80.4
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC-CccEEEech-hhc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP-PADAVVLKW-ILH 266 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p-~~D~i~~~~-vLh 266 (307)
....+|||||||+|.++..+++. .+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .+|+|++.. ++|
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLN 108 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence 34579999999999999999887 68999999 888888876 34689999999987 444 599999986 998
Q ss_pred cC-ChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127 267 DW-NDEECVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 267 ~~-~~~~~~~~L~~~~~~L~p~~~gg~lli 295 (307)
++ +.++...+|++++++|+| ||++++
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~p---gG~l~~ 135 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLTD---GGKLLF 135 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEEE---EEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCC---CeEEEE
Confidence 87 456678999999999999 888876
No 88
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.31 E-value=2.3e-11 Score=100.60 Aligned_cols=108 Identities=15% Similarity=0.298 Sum_probs=87.4
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCC--CeEEEecCCCCCCC-
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLA--NLKYVGGDMFEAIP- 254 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~--rv~~~~~d~~~~~p- 254 (307)
..+++.+. ..+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ ... |++++.+|+.+..+
T Consensus 42 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (194)
T 1dus_A 42 KILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD 117 (194)
T ss_dssp HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred HHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccccc
Confidence 44555555 456779999999999999999998 779999999 888888876 223 59999999988544
Q ss_pred -CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 255 -PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 255 -~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
.+|+|++..++| +..+....+++++++.|+| ||++++....
T Consensus 118 ~~~D~v~~~~~~~-~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~ 159 (194)
T 1dus_A 118 RKYNKIITNPPIR-AGKEVLHRIIEEGKELLKD---NGEIWVVIQT 159 (194)
T ss_dssp SCEEEEEECCCST-TCHHHHHHHHHHHHHHEEE---EEEEEEEEES
T ss_pred CCceEEEECCCcc-cchhHHHHHHHHHHHHcCC---CCEEEEEECC
Confidence 599999988877 3445567999999999999 8999988765
No 89
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.30 E-value=1.2e-11 Score=122.04 Aligned_cols=101 Identities=12% Similarity=0.175 Sum_probs=86.3
Q ss_pred cCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----------cCCCeEEEecCCCC-CCC--CccE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----------DLANLKYVGGDMFE-AIP--PADA 258 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----------~~~rv~~~~~d~~~-~~p--~~D~ 258 (307)
.+..+|||||||+|.++..+++.. |..+++++|+ +.+++.|++ ...+++|+.+|+.+ +.+ .||+
T Consensus 720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl 799 (950)
T 3htx_A 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI 799 (950)
T ss_dssp SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence 467899999999999999999998 5679999999 888888865 23579999999988 443 5999
Q ss_pred EEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 259 VVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 259 i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
|++..++|++++++...++++++++|+| | .++|..+.
T Consensus 800 VV~~eVLeHL~dp~l~~~L~eI~RvLKP---G-~LIISTPN 836 (950)
T 3htx_A 800 GTCLEVIEHMEEDQACEFGEKVLSLFHP---K-LLIVSTPN 836 (950)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTTCC---S-EEEEEECB
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCC---C-EEEEEecC
Confidence 9999999999998888899999999999 6 66666543
No 90
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.30 E-value=9.3e-12 Score=111.83 Aligned_cols=100 Identities=15% Similarity=0.104 Sum_probs=81.7
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c-----------CCCeEEEecCCCCC-----C--C
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D-----------LANLKYVGGDMFEA-----I--P 254 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~-----------~~rv~~~~~d~~~~-----~--p 254 (307)
.+..+|||||||+|.++..+++ .+..+++++|+ +.+++.+++ . ..+++++++|+.+. + +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 3567999999999999999988 45779999999 788888875 1 13799999999873 3 2
Q ss_pred --CccEEEechhhccC--ChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 255 --PADAVVLKWILHDW--NDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 255 --~~D~i~~~~vLh~~--~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.+|+|++..++|+. +.++...+|++++++|+| ||.+++..+
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~ 156 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSP---GGYFIGTTP 156 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE---EEEEEEEEE
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC---CcEEEEecC
Confidence 59999999999976 335567999999999999 898888765
No 91
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.30 E-value=1.8e-11 Score=108.91 Aligned_cols=99 Identities=16% Similarity=0.211 Sum_probs=75.3
Q ss_pred CCCeEEEecCCchHHHH----HHHHHCCCCeE--EEecc-hHHHHhchh---c---CCCeEE--EecCCCC-C------C
Q 037127 196 GLNSLVDVGGATGTVAK----AIAKAFPNLEC--TDFDL-PHVVNGLES---D---LANLKY--VGGDMFE-A------I 253 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~----~l~~~~p~~~~--~~~Dl-~~~~~~a~~---~---~~rv~~--~~~d~~~-~------~ 253 (307)
+..+|||||||+|.++. .++.++|+.++ +++|. +.+++.+++ . .+++++ ..++..+ + +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 45689999999997554 45566788854 99999 888888776 1 235554 4555432 1 2
Q ss_pred C--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 254 P--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 254 p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
+ .||+|+++++||+++|.+ +.|++++++||| ||+++|.+..
T Consensus 132 ~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~ 174 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGT---NAKMLIIVVS 174 (292)
T ss_dssp CCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEE---EEEEEEEEEC
T ss_pred CCCceeEEEEeeeeeecCCHH--HHHHHHHHHcCC---CcEEEEEEec
Confidence 2 499999999999999864 789999999999 9999998643
No 92
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.30 E-value=9.5e-12 Score=105.87 Aligned_cols=105 Identities=18% Similarity=0.258 Sum_probs=85.0
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC---CCC--Cc
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE---AIP--PA 256 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~---~~p--~~ 256 (307)
...+++.++ .+..+|||||||+|.++..+++. + .+++++|+ +.+++.+++.. .++..+|+.+ +.+ .|
T Consensus 22 ~~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~f 94 (230)
T 3cc8_A 22 NPNLLKHIK---KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL--DHVVLGDIETMDMPYEEEQF 94 (230)
T ss_dssp CHHHHTTCC---TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS--SEEEESCTTTCCCCSCTTCE
T ss_pred HHHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC--CcEEEcchhhcCCCCCCCcc
Confidence 344555443 45679999999999999999998 4 89999999 78888887422 3788899875 333 49
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
|+|++..++|++++. ..+|++++++|+| ||++++..+.
T Consensus 95 D~v~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~ 132 (230)
T 3cc8_A 95 DCVIFGDVLEHLFDP--WAVIEKVKPYIKQ---NGVILASIPN 132 (230)
T ss_dssp EEEEEESCGGGSSCH--HHHHHHTGGGEEE---EEEEEEEEEC
T ss_pred CEEEECChhhhcCCH--HHHHHHHHHHcCC---CCEEEEEeCC
Confidence 999999999999876 4899999999999 8999988754
No 93
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.30 E-value=1.2e-11 Score=113.94 Aligned_cols=109 Identities=13% Similarity=0.208 Sum_probs=87.1
Q ss_pred HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cC--CCeEEEecCCCCCCC-
Q 037127 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DL--ANLKYVGGDMFEAIP- 254 (307)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~--~rv~~~~~d~~~~~p- 254 (307)
.+++.++ .....+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ .. .+++|..+|++++.+
T Consensus 213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~ 290 (375)
T 4dcm_A 213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 290 (375)
T ss_dssp HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence 4555555 34457999999999999999999999999999999 788888876 11 268999999999766
Q ss_pred -CccEEEechhhcc---CChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 255 -PADAVVLKWILHD---WNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 255 -~~D~i~~~~vLh~---~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.||+|++.-.+|. .++....++|++++++|+| ||+++|+..
T Consensus 291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~iv~n 335 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVAN 335 (375)
T ss_dssp TCEEEEEECCCC-------CCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC---CcEEEEEEE
Confidence 4999999988884 3445556899999999999 899998653
No 94
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.30 E-value=5.3e-12 Score=115.12 Aligned_cols=111 Identities=15% Similarity=0.245 Sum_probs=89.9
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC-Ccc
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP-PAD 257 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p-~~D 257 (307)
+.+++.+. .....+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..-.++++.+|+++..+ .||
T Consensus 186 ~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD 263 (343)
T 2pjd_A 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD 263 (343)
T ss_dssp HHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred HHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence 44555554 23456899999999999999999999999999999 778888876 33457889999987444 599
Q ss_pred EEEechhhcc---CChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 258 AVVLKWILHD---WNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 258 ~i~~~~vLh~---~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
+|++..++|+ ++.+...++|++++++|+| ||+++|+...
T Consensus 264 ~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~ 305 (343)
T 2pjd_A 264 MIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS---GGELRIVANA 305 (343)
T ss_dssp EEEECCCCCSSSHHHHHHHHHHHHHHGGGEEE---EEEEEEEEET
T ss_pred EEEECCCcccCccCCHHHHHHHHHHHHHhCCC---CcEEEEEEcC
Confidence 9999999986 3455668999999999999 9999998654
No 95
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.28 E-value=1.5e-11 Score=101.64 Aligned_cols=103 Identities=13% Similarity=0.167 Sum_probs=77.1
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC--CC-C-CccEEEec-
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE--AI-P-PADAVVLK- 262 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~--~~-p-~~D~i~~~- 262 (307)
+.+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ ..++++++..++.. +. + .||+|++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 355679999999999999999998 789999999 888888876 23789999977655 12 3 49999877
Q ss_pred hhhccC------ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 263 WILHDW------NDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 263 ~vLh~~------~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
..++.- ..+....+|+++++.|+| ||+++++.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~ 139 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEV---GGRLAIMIYYGH 139 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEE---EEEEEEEEC---
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCC---CcEEEEEEeCCC
Confidence 333320 224456889999999999 999998876443
No 96
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.28 E-value=2e-11 Score=108.23 Aligned_cols=97 Identities=9% Similarity=0.160 Sum_probs=80.2
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCCCccEEEechhhc
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIPPADAVVLKWILH 266 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p~~D~i~~~~vLh 266 (307)
+.++.+|||||||+|.++..++.+.++.+++++|+ |.+++.|++ ..++|+|+++|+.+ +...||+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~-- 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL-- 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence 56788999999999988776666778999999999 899999887 23899999999987 3235999998654
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 267 DWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 267 ~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.++. .+++++++++|+| ||++++.+.
T Consensus 198 -~~d~--~~~l~el~r~LkP---GG~Lvv~~~ 223 (298)
T 3fpf_A 198 -AEPK--RRVFRNIHRYVDT---ETRIIYRTY 223 (298)
T ss_dssp -CSCH--HHHHHHHHHHCCT---TCEEEEEEC
T ss_pred -ccCH--HHHHHHHHHHcCC---CcEEEEEcC
Confidence 2443 5899999999999 999998763
No 97
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.28 E-value=2.1e-11 Score=106.09 Aligned_cols=100 Identities=10% Similarity=0.137 Sum_probs=81.6
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC---CCC---CccEE
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE---AIP---PADAV 259 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~---~~p---~~D~i 259 (307)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ ..++|+++.+|+.+ ..+ .||+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 45678999999999999999999998 789999999 888888876 34689999999865 221 59999
Q ss_pred EechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 260 VLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 260 ~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
++.. +......+|+++.+.|+| ||.+++-+..+.
T Consensus 141 ~~d~-----~~~~~~~~l~~~~~~Lkp---GG~lv~~~~~~~ 174 (248)
T 3tfw_A 141 FIDA-----DKPNNPHYLRWALRYSRP---GTLIIGDNVVRD 174 (248)
T ss_dssp EECS-----CGGGHHHHHHHHHHTCCT---TCEEEEECCSGG
T ss_pred EECC-----chHHHHHHHHHHHHhcCC---CeEEEEeCCCcC
Confidence 8854 333456899999999999 898887776654
No 98
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.28 E-value=2.3e-11 Score=108.96 Aligned_cols=99 Identities=11% Similarity=0.117 Sum_probs=77.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCC-------CeEEEecCCCC---------CCC
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLA-------NLKYVGGDMFE---------AIP 254 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~-------rv~~~~~d~~~---------~~p 254 (307)
...+|||||||+|..+..+++.. ..+++++|+ +.+++.|++ ... +++|.+.|+.. +.+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 46799999999998777766643 468999999 889999886 121 26788888832 233
Q ss_pred --CccEEEechhhcc-CChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 255 --PADAVVLKWILHD-WNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 255 --~~D~i~~~~vLh~-~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.||+|++..++|+ |+.++...+|++++++|+| ||++++..+
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lkp---GG~~i~~~~ 170 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS---GGKVLITTM 170 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCC---CCEEEEEeC
Confidence 5999999999997 5555567999999999999 899887665
No 99
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.28 E-value=2.8e-11 Score=101.37 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=80.1
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC--CccEEEechhhccCCh
Q 037127 199 SLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP--PADAVVLKWILHDWND 270 (307)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~ 270 (307)
+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|++. +++++.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~~ 107 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHLPS 107 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCCCH
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcCCH
Confidence 9999999999999999987 569999999 788888876 23489999999987 444 49999985 344676
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 271 EECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 271 ~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
++...+|++++++|+| ||++++.++...
T Consensus 108 ~~~~~~l~~~~~~L~p---gG~l~~~~~~~~ 135 (202)
T 2kw5_A 108 SLRQQLYPKVYQGLKP---GGVFILEGFAPE 135 (202)
T ss_dssp HHHHHHHHHHHTTCCS---SEEEEEEEECTT
T ss_pred HHHHHHHHHHHHhcCC---CcEEEEEEeccc
Confidence 7778999999999999 899999876543
No 100
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.27 E-value=1.8e-11 Score=103.90 Aligned_cols=105 Identities=13% Similarity=0.176 Sum_probs=84.2
Q ss_pred HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCC-----CC-C-c
Q 037127 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEA-----IP-P-A 256 (307)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~-----~p-~-~ 256 (307)
.++..+. .....+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .++.+..+|+.+. .+ . |
T Consensus 43 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~f 117 (227)
T 3e8s_A 43 AILLAIL--GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA-GAGEVHLASYAQLAEAKVPVGKDY 117 (227)
T ss_dssp HHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCCE
T ss_pred HHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh-cccccchhhHHhhcccccccCCCc
Confidence 3444444 345689999999999999999998 668999999 8888888843 6788888887551 22 3 9
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
|+|++..++| +++. ..+|++++++|+| ||+++|.++..
T Consensus 118 D~v~~~~~l~-~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~ 155 (227)
T 3e8s_A 118 DLICANFALL-HQDI--IELLSAMRTLLVP---GGALVIQTLHP 155 (227)
T ss_dssp EEEEEESCCC-SSCC--HHHHHHHHHTEEE---EEEEEEEECCT
T ss_pred cEEEECchhh-hhhH--HHHHHHHHHHhCC---CeEEEEEecCc
Confidence 9999999999 6554 5899999999999 89999987644
No 101
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.27 E-value=3.8e-12 Score=109.97 Aligned_cols=98 Identities=12% Similarity=0.060 Sum_probs=78.1
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC---CCC--CccEEEe---
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE---AIP--PADAVVL--- 261 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~---~~p--~~D~i~~--- 261 (307)
.++.+|||||||+|..+..+++..|. +++++|+ |.+++.|++ ...+++++.+|... +.+ .||.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 45779999999999999999988775 7999999 899999887 45678888888654 344 3888764
Q ss_pred --chhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 262 --KWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 262 --~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
...++++++. ..++++++++||| ||++++++.
T Consensus 138 ~~~~~~~~~~~~--~~~~~e~~rvLkP---GG~l~f~~~ 171 (236)
T 3orh_A 138 PLSEETWHTHQF--NFIKNHAFRLLKP---GGVLTYCNL 171 (236)
T ss_dssp CCBGGGTTTHHH--HHHHHTHHHHEEE---EEEEEECCH
T ss_pred ecccchhhhcch--hhhhhhhhheeCC---CCEEEEEec
Confidence 4555555554 5899999999999 899887753
No 102
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.27 E-value=1.7e-11 Score=108.27 Aligned_cols=104 Identities=16% Similarity=0.148 Sum_probs=82.5
Q ss_pred HHHHhccccccCCCeEEEecCCchHHHHHHHHH-CCCCeEEEecc-hHHHHhchh---cC---CCeEEEecCCCCCCC--
Q 037127 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA-FPNLECTDFDL-PHVVNGLES---DL---ANLKYVGGDMFEAIP-- 254 (307)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~---~~---~rv~~~~~d~~~~~p-- 254 (307)
.++..++ ..+..+|||+|||+|.++..+++. +|+.+++++|+ +.+++.+++ .. ++++++.+|+.++.+
T Consensus 101 ~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 178 (275)
T 1yb2_A 101 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 178 (275)
T ss_dssp -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCC
Confidence 3444444 566789999999999999999998 78899999999 888888876 22 589999999998655
Q ss_pred CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
.||+|++ ++++. ..+|+++.++|+| ||++++..+..
T Consensus 179 ~fD~Vi~-----~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~ 214 (275)
T 1yb2_A 179 MYDAVIA-----DIPDP--WNHVQKIASMMKP---GSVATFYLPNF 214 (275)
T ss_dssp CEEEEEE-----CCSCG--GGSHHHHHHTEEE---EEEEEEEESSH
T ss_pred CccEEEE-----cCcCH--HHHHHHHHHHcCC---CCEEEEEeCCH
Confidence 4999998 45554 3789999999999 89999887643
No 103
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.26 E-value=1e-11 Score=108.00 Aligned_cols=105 Identities=13% Similarity=0.189 Sum_probs=85.8
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHH-CCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC-
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA-FPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP- 254 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p- 254 (307)
..++..++ ..+..+|||+|||+|.++..+++. .|+.+++++|+ +.+++.|++ ..+++++..+|+.+.++
T Consensus 83 ~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 160 (255)
T 3mb5_A 83 ALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE 160 (255)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred HHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence 34455555 566789999999999999999999 88999999999 788888876 35679999999998665
Q ss_pred -CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 255 -PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 255 -~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
.+|+|++ ++++. ..+|+++.++|+| ||++++..+..
T Consensus 161 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~ 197 (255)
T 3mb5_A 161 ENVDHVIL-----DLPQP--ERVVEHAAKALKP---GGFFVAYTPCS 197 (255)
T ss_dssp CSEEEEEE-----CSSCG--GGGHHHHHHHEEE---EEEEEEEESSH
T ss_pred CCcCEEEE-----CCCCH--HHHHHHHHHHcCC---CCEEEEEECCH
Confidence 4999987 34544 3789999999999 99999887543
No 104
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.25 E-value=9.5e-11 Score=102.70 Aligned_cols=103 Identities=22% Similarity=0.284 Sum_probs=82.6
Q ss_pred CCCeEEEecCCc---hHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c----CCCeEEEecCCCCCC-----C----Ccc
Q 037127 196 GLNSLVDVGGAT---GTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D----LANLKYVGGDMFEAI-----P----PAD 257 (307)
Q Consensus 196 ~~~~vlDvGgG~---G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~----~~rv~~~~~d~~~~~-----p----~~D 257 (307)
+..+|||||||+ |.....+.+..|+.+++++|. |.|++.+++ . ..+++|+++|+.++. | .+|
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 567999999996 344444455789999999999 899999987 2 247999999998730 1 134
Q ss_pred -----EEEechhhccCChhH-HHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 258 -----AVVLKWILHDWNDEE-CVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 258 -----~i~~~~vLh~~~~~~-~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
.+++..+||+.++++ ...+|++++++|+| ||+++|.+...+
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~P---GG~Lvls~~~~d 204 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPS---GSYLAMSIGTAE 204 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCT---TCEEEEEEECCT
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCC---CcEEEEEeccCC
Confidence 688999999999875 47899999999999 999999887654
No 105
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.25 E-value=9.2e-12 Score=107.26 Aligned_cols=101 Identities=13% Similarity=0.134 Sum_probs=80.2
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC---CCC--CccEEEe-ch
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE---AIP--PADAVVL-KW 263 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~---~~p--~~D~i~~-~~ 263 (307)
.+..+|||||||+|.++..+++..+ .+++++|+ +.+++.|++ ...+++++.+|+.+ +++ .||+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4567999999999999999977544 38999999 888888876 34689999999865 344 4999998 55
Q ss_pred h--hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 264 I--LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 264 v--Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
. .+++.......+|++++++||| ||++++++..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~Lkp---gG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKP---GGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEE---EEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCC---CeEEEEEecC
Confidence 4 4445555556889999999999 9999988653
No 106
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.24 E-value=4.6e-11 Score=111.54 Aligned_cols=112 Identities=16% Similarity=0.272 Sum_probs=86.8
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhc-------hh-----c--CCCeEEEecC
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGL-------ES-----D--LANLKYVGGD 248 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a-------~~-----~--~~rv~~~~~d 248 (307)
..++..+. .....+|||||||+|.++..+++.++..+++++|+ +.+++.| ++ . ..+|+++.+|
T Consensus 232 ~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD 309 (433)
T 1u2z_A 232 SDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 309 (433)
T ss_dssp HHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence 33445444 56678999999999999999999988789999999 6666666 43 1 3789999985
Q ss_pred CC-CC--C----CCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCC
Q 037127 249 MF-EA--I----PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENK 303 (307)
Q Consensus 249 ~~-~~--~----p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~ 303 (307)
.+ .+ + ..||+|++.++++ . ++....|+++.+.|+| ||++++.+.+.+++
T Consensus 310 ~~~~~~~~~~~~~~FDvIvvn~~l~--~-~d~~~~L~el~r~LKp---GG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 310 SFVDNNRVAELIPQCDVILVNNFLF--D-EDLNKKVEKILQTAKV---GCKIISLKSLRSLT 365 (433)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTC--C-HHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred ccccccccccccCCCCEEEEeCccc--c-ccHHHHHHHHHHhCCC---CeEEEEeeccCCcc
Confidence 54 31 1 2599999887773 2 3446788999999999 99999998877764
No 107
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.24 E-value=5.6e-11 Score=100.74 Aligned_cols=98 Identities=18% Similarity=0.285 Sum_probs=79.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-C--CC--CccEEEechh
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A--IP--PADAVVLKWI 264 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~--~p--~~D~i~~~~v 264 (307)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++++++.+|+.+ + ++ .+|+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 456899999999999999999999999999999 888888876 24789999999987 3 43 4999998865
Q ss_pred hccCChh-------HHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 265 LHDWNDE-------ECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 265 Lh~~~~~-------~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
.+ |... ....+|++++++|+| ||.+++..
T Consensus 121 ~~-~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~ 156 (214)
T 1yzh_A 121 DP-WPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFKT 156 (214)
T ss_dssp CC-CCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEEE
T ss_pred CC-ccccchhhhccCCHHHHHHHHHHcCC---CcEEEEEe
Confidence 43 3221 124799999999999 89887754
No 108
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.24 E-value=3.1e-11 Score=102.69 Aligned_cols=90 Identities=13% Similarity=0.098 Sum_probs=77.4
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccEEEechhhccCChhH
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAVVLKWILHDWNDEE 272 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~~~ 272 (307)
..+|||||||+|.++..+++. +++|. +.+++.+++. +++++.+|+.+ +.+ .+|+|++..++|++++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~- 118 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP- 118 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH-
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH-
Confidence 679999999999999988765 89999 8888888744 79999999877 444 49999999999999775
Q ss_pred HHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 273 CVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 273 ~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
..+|++++++|+| ||++++.+..
T Consensus 119 -~~~l~~~~~~L~p---gG~l~i~~~~ 141 (219)
T 1vlm_A 119 -ERALKEAYRILKK---GGYLIVGIVD 141 (219)
T ss_dssp -HHHHHHHHHHEEE---EEEEEEEEEC
T ss_pred -HHHHHHHHHHcCC---CcEEEEEEeC
Confidence 5899999999999 8999988764
No 109
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.24 E-value=2.2e-11 Score=115.68 Aligned_cols=107 Identities=13% Similarity=0.137 Sum_probs=87.7
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCC-CCC-
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIP- 254 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p- 254 (307)
.+.+++.+. ..+..+|||||||+|.++..+++ .+..+++++|++++++.|++ ..++|+++.+|+.+ +.|
T Consensus 147 ~~~il~~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~ 223 (480)
T 3b3j_A 147 QRAILQNHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPE 223 (480)
T ss_dssp HHHHHHTGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS
T ss_pred HHHHHHhhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCC
Confidence 345555554 44567999999999999998887 57789999999668777765 34799999999998 555
Q ss_pred CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127 255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli 295 (307)
.+|+|++..++|++.+++....+.++++.|+| ||++++
T Consensus 224 ~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp---gG~li~ 261 (480)
T 3b3j_A 224 QVDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFP 261 (480)
T ss_dssp CEEEEECCCCHHHHTCHHHHHHHHHGGGGEEE---EEEEES
T ss_pred CeEEEEEeCchHhcCcHHHHHHHHHHHHhcCC---CCEEEE
Confidence 59999998888888877778888899999999 888774
No 110
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.24 E-value=8.3e-11 Score=99.23 Aligned_cols=100 Identities=14% Similarity=0.146 Sum_probs=79.8
Q ss_pred HHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---CCC
Q 037127 186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---IPP 255 (307)
Q Consensus 186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~p~ 255 (307)
++..+. .....+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++++++.+|+.+. .+.
T Consensus 47 ~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 47 TLAALA--PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHC--CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHhcC--CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 334444 456789999999999999999998 779999999 888888876 234899999999883 346
Q ss_pred ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
||+|++...+ + .. +++++.++|+| ||++++....
T Consensus 123 ~D~v~~~~~~----~--~~-~l~~~~~~Lkp---gG~lv~~~~~ 156 (204)
T 3njr_A 123 PEAVFIGGGG----S--QA-LYDRLWEWLAP---GTRIVANAVT 156 (204)
T ss_dssp CSEEEECSCC----C--HH-HHHHHHHHSCT---TCEEEEEECS
T ss_pred CCEEEECCcc----c--HH-HHHHHHHhcCC---CcEEEEEecC
Confidence 9999987644 2 23 89999999999 8998886543
No 111
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.23 E-value=2.5e-11 Score=110.91 Aligned_cols=107 Identities=14% Similarity=0.149 Sum_probs=86.4
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCC-CCC-C
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIP-P 255 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p-~ 255 (307)
+.+++.+. ..+..+|||||||+|.++..+++. +..+++++|.+++++.+++ ..++++++.+|+.+ +.| .
T Consensus 40 ~~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~ 116 (348)
T 2y1w_A 40 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 116 (348)
T ss_dssp HHHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCc
Confidence 44555554 456779999999999999999885 5679999999667777765 34789999999988 455 5
Q ss_pred ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
+|+|++..++|++..+.....+.++++.|+| ||++++.
T Consensus 117 ~D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~ 154 (348)
T 2y1w_A 117 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFPT 154 (348)
T ss_dssp EEEEEECCCBTTBTTTSHHHHHHHGGGGEEE---EEEEESC
T ss_pred eeEEEEeCchhcCChHHHHHHHHHHHhhcCC---CeEEEEe
Confidence 9999999999888877777888999999999 8888743
No 112
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.23 E-value=2.3e-11 Score=102.25 Aligned_cols=97 Identities=14% Similarity=0.203 Sum_probs=80.1
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC-CccEEEechhhcc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP-PADAVVLKWILHD 267 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p-~~D~i~~~~vLh~ 267 (307)
.+..+|||||||+|.++..+++ .+..+++++|+ +.+++.+++ ...++++..+|+.+..+ .||+|++..++|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 4567999999999999999887 56779999999 888888876 22349999999988544 5999999887764
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 268 WNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
...++++++++|+| ||++++.+...
T Consensus 138 -----~~~~l~~~~~~L~~---gG~l~~~~~~~ 162 (205)
T 3grz_A 138 -----LLDLIPQLDSHLNE---DGQVIFSGIDY 162 (205)
T ss_dssp -----HHHHGGGSGGGEEE---EEEEEEEEEEG
T ss_pred -----HHHHHHHHHHhcCC---CCEEEEEecCc
Confidence 35889999999999 89999876554
No 113
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.23 E-value=7.3e-11 Score=104.11 Aligned_cols=99 Identities=23% Similarity=0.312 Sum_probs=80.8
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC--CccEEEec----
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--PADAVVLK---- 262 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--~~D~i~~~---- 262 (307)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++++++.+|++++.+ .||+|++.
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 187 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence 3456899999999999999999999999999999 888888876 23589999999998653 59999997
Q ss_pred ---------hhhccCCh----------hHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 263 ---------WILHDWND----------EECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 263 ---------~vLh~~~~----------~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
.++++.|. +....+++++++.|+| ||++++.
T Consensus 188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp---gG~l~~~ 237 (276)
T 2b3t_A 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLLE 237 (276)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEEE
T ss_pred CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 34444442 3447899999999999 7887774
No 114
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.23 E-value=6.8e-11 Score=100.26 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=73.7
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCC-----CC-CccEEEech
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEA-----IP-PADAVVLKW 263 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~-----~p-~~D~i~~~~ 263 (307)
..+..+|||||||+|.++..+++..++.+++++|+ +.+++.+.+ ...++.++.+|+..+ .+ .+|+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 45667999999999999999999988779999999 655433222 346799999998763 22 49999886
Q ss_pred hhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
+.+ + ++...+|++++++||| ||++++.
T Consensus 134 ~~~--~-~~~~~~l~~~~r~Lkp---gG~l~i~ 160 (210)
T 1nt2_A 134 IAQ--K-NQIEILKANAEFFLKE---KGEVVIM 160 (210)
T ss_dssp CCS--T-THHHHHHHHHHHHEEE---EEEEEEE
T ss_pred ccC--h-hHHHHHHHHHHHHhCC---CCEEEEE
Confidence 322 2 3344669999999999 9999987
No 115
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.23 E-value=3.7e-11 Score=98.34 Aligned_cols=95 Identities=17% Similarity=0.270 Sum_probs=78.6
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCC--CccEEEechhhccCChh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP--PADAVVLKWILHDWNDE 271 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~~~~~ 271 (307)
.+..+|||||||+|.++..+++.. +++++|+ +.+++. ..+++++.+|+.++.+ .||+|+++..+|..++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~----~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~ 94 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES----HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDD 94 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT----CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCC
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc----ccCCeEEECChhhhcccCCCCEEEECCCCccCCcc
Confidence 345699999999999999999986 9999999 777776 4689999999998655 49999998888865443
Q ss_pred -------HHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 272 -------ECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 272 -------~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
+...+++++.+.+ | ||++++++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l-p---gG~l~~~~~~~ 126 (170)
T 3q87_B 95 PIIGGGYLGREVIDRFVDAV-T---VGMLYLLVIEA 126 (170)
T ss_dssp TTTBCCGGGCHHHHHHHHHC-C---SSEEEEEEEGG
T ss_pred ccccCCcchHHHHHHHHhhC-C---CCEEEEEEecC
Confidence 3467889999999 7 89999987544
No 116
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.22 E-value=6.7e-11 Score=101.49 Aligned_cols=95 Identities=17% Similarity=0.219 Sum_probs=77.6
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCC-----CC-CccEEEech
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEA-----IP-PADAVVLKW 263 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~-----~p-~~D~i~~~~ 263 (307)
+.+..+|||||||+|.++..+++.+|..+++++|. +.+++.+++ ..+++.++.+|+.++ .+ .+|+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 45677999999999999999999988789999999 788877765 337899999999862 22 489988
Q ss_pred hhccCChh-HHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 264 ILHDWNDE-ECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 264 vLh~~~~~-~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
|++++. ....+|+++++.|+| ||+++|.
T Consensus 149 --~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~ 177 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKK---GGYGMIA 177 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred --EecCChhHHHHHHHHHHHhCCC---CcEEEEE
Confidence 555544 345679999999999 8998886
No 117
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.22 E-value=2.2e-11 Score=103.42 Aligned_cols=98 Identities=13% Similarity=0.106 Sum_probs=73.4
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHh----chh-----cCCCeEEEecCCCC-CCC-CccEEEe
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNG----LES-----DLANLKYVGGDMFE-AIP-PADAVVL 261 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~----a~~-----~~~rv~~~~~d~~~-~~p-~~D~i~~ 261 (307)
..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ ..++++++.+|+.+ +.+ ..|.+.+
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 45677999999999999999999999999999999 665553 222 34589999999988 443 2255542
Q ss_pred c---hhhc--cCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 262 K---WILH--DWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 262 ~---~vLh--~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
. ..+| +.++. ..+|++++++|+| ||++++.
T Consensus 105 ~~~~~~~~~~~~~~~--~~~l~~~~~~Lkp---gG~l~~~ 139 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSS--PEMLRGMAAVCRP---GASFLVA 139 (218)
T ss_dssp ESCCHHHHHHHHTSS--SHHHHHHHHTEEE---EEEEEEE
T ss_pred EccchhhhhhhhccH--HHHHHHHHHHcCC---CcEEEEE
Confidence 2 2222 34443 4889999999999 8888874
No 118
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.22 E-value=5.9e-11 Score=100.78 Aligned_cols=98 Identities=19% Similarity=0.288 Sum_probs=77.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-C--CC--CccEEEechh
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A--IP--PADAVVLKWI 264 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~--~p--~~D~i~~~~v 264 (307)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++ ..++++++.+|+.+ + ++ .+|.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 356899999999999999999999999999999 888888775 24689999999876 2 44 4898876543
Q ss_pred hccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 265 LHDWNDEE-------CVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 265 Lh~~~~~~-------~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
.+ |+... ...+|+.++++|+| ||.+++..
T Consensus 118 ~p-~~~~~~~~~rl~~~~~l~~~~~~Lkp---gG~l~~~t 153 (213)
T 2fca_A 118 DP-WPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT 153 (213)
T ss_dssp CC-CCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred CC-CcCccccccccCcHHHHHHHHHHcCC---CCEEEEEe
Confidence 32 33210 24789999999999 89988764
No 119
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.21 E-value=2.2e-11 Score=103.94 Aligned_cols=98 Identities=20% Similarity=0.252 Sum_probs=77.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC----CC--CccEEEech
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA----IP--PADAVVLKW 263 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~----~p--~~D~i~~~~ 263 (307)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++++++.+|+.+. ++ .+|.|++..
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 456899999999999999999999999999999 788887765 346799999998662 44 489998775
Q ss_pred hhccCChhHH-------HHHHHHHHHhccCCCCCcEEEEEe
Q 037127 264 ILHDWNDEEC-------VKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 264 vLh~~~~~~~-------~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
... |+.... ..+++.++++|+| ||++++..
T Consensus 114 ~~p-~~~~~~~~rr~~~~~~l~~~~r~Lkp---GG~l~i~t 150 (218)
T 3dxy_A 114 PDP-WHKARHNKRRIVQVPFAELVKSKLQL---GGVFHMAT 150 (218)
T ss_dssp CCC-CCSGGGGGGSSCSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCC-ccchhhhhhhhhhHHHHHHHHHHcCC---CcEEEEEe
Confidence 443 333211 2499999999999 88887764
No 120
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.21 E-value=4.4e-11 Score=99.84 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=82.1
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC--C-C-CccEEEe
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA--I-P-PADAVVL 261 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~--~-p-~~D~i~~ 261 (307)
..+..+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++ ..++++++.+|+.+. . + .||+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 3556799999999999999999986 6779999999 888888876 147899999998662 2 2 4999998
Q ss_pred chhhcc-------CChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 262 KWILHD-------WNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 262 ~~vLh~-------~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
...+.. ...++...+++++.++|+| ||+++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~l~~~~~~~ 142 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVT---GGIITVVIYYG 142 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE---EEEEEEEECCB
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcC---CCEEEEEEccC
Confidence 865511 1223446799999999999 89999887544
No 121
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.21 E-value=4.7e-11 Score=103.71 Aligned_cols=102 Identities=16% Similarity=0.197 Sum_probs=82.7
Q ss_pred CCCeEEEecCCchHHHHHHHHH--CCCCeEEEecc-hHHHHhchh--cCC-------C----------------------
Q 037127 196 GLNSLVDVGGATGTVAKAIAKA--FPNLECTDFDL-PHVVNGLES--DLA-------N---------------------- 241 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~--~p~~~~~~~Dl-~~~~~~a~~--~~~-------r---------------------- 241 (307)
...+|||+|||+|.++..+++. +|..+++++|+ +.+++.|++ ... +
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 5679999999999999999998 78889999999 888888875 111 2
Q ss_pred ---eE-------------EEecCCCCCC------C--CccEEEechhhccCCh-------hHHHHHHHHHHHhccCCCCC
Q 037127 242 ---LK-------------YVGGDMFEAI------P--PADAVVLKWILHDWND-------EECVKILKKCKEAITSNSKI 290 (307)
Q Consensus 242 ---v~-------------~~~~d~~~~~------p--~~D~i~~~~vLh~~~~-------~~~~~~L~~~~~~L~p~~~g 290 (307)
++ |+.+|++++. + .||+|++...++...+ +....++++++++|+| |
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---g 207 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA---H 207 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT---T
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC---C
Confidence 77 9999999854 3 5999999877665432 5567899999999999 9
Q ss_pred cEEEEEeeec
Q 037127 291 GKVIIIDMMR 300 (307)
Q Consensus 291 g~lli~e~~~ 300 (307)
|+++++....
T Consensus 208 G~l~~~~~~~ 217 (250)
T 1o9g_A 208 AVIAVTDRSR 217 (250)
T ss_dssp CEEEEEESSS
T ss_pred cEEEEeCcch
Confidence 9999865443
No 122
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.20 E-value=4.4e-12 Score=106.85 Aligned_cols=101 Identities=18% Similarity=0.188 Sum_probs=66.6
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c---CCCeEEEecCCCCCC-------CCccEEEec
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D---LANLKYVGGDMFEAI-------PPADAVVLK 262 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~---~~rv~~~~~d~~~~~-------p~~D~i~~~ 262 (307)
.+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ . ..+++++.+|+.++. ..||+|++.
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 5678999999999999999999999999999999 888888876 1 117899999988732 359999995
Q ss_pred hhh------ccCChhHH------------------HHHHHHHHHhccCCCCCcEEEEEee
Q 037127 263 WIL------HDWNDEEC------------------VKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 263 ~vL------h~~~~~~~------------------~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
-.. +.++.+.. ..++++++++|+| ||++++++.
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~ 165 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR---GRAGVFLEV 165 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBCS---SSEEEEEEC
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC---CCeEEEEEE
Confidence 433 33333222 6889999999999 999666654
No 123
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.20 E-value=3e-11 Score=103.93 Aligned_cols=99 Identities=12% Similarity=0.233 Sum_probs=80.1
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCC-----CCccEEEe
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAI-----PPADAVVL 261 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~-----p~~D~i~~ 261 (307)
..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ ..++|+++.+|+.+.. ..||+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 34577999999999999999999889999999999 888888876 3469999999998732 25999986
Q ss_pred chhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 262 KWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 262 ~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
... ......+++++.+.|+| ||.+++-+..+
T Consensus 149 ~~~-----~~~~~~~l~~~~~~Lkp---gG~lv~d~~~~ 179 (232)
T 3ntv_A 149 DAA-----KAQSKKFFEIYTPLLKH---QGLVITDNVLY 179 (232)
T ss_dssp ETT-----SSSHHHHHHHHGGGEEE---EEEEEEECTTG
T ss_pred cCc-----HHHHHHHHHHHHHhcCC---CeEEEEeeCCc
Confidence 643 22346799999999999 88887755544
No 124
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.20 E-value=6.5e-11 Score=103.41 Aligned_cols=96 Identities=15% Similarity=0.170 Sum_probs=78.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCC-CCC--CccEEEechhhccCCh
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFE-AIP--PADAVVLKWILHDWND 270 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~ 270 (307)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ... .++.+|+.+ +++ .||+|++..+++++.+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~--~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~ 129 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVK--NVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 129 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCS--CEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCC--CEEECcHHHCCCCCCCEEEEEEcchhhhccc
Confidence 5679999999999999999987 568999999 888888886 332 288899987 444 4999999886666633
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 271 EECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 271 ~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
+ ...+|++++++|+| ||++++..+.
T Consensus 130 ~-~~~~l~~~~~~Lkp---gG~l~~~~~~ 154 (260)
T 2avn_A 130 N-KDKAFSEIRRVLVP---DGLLIATVDN 154 (260)
T ss_dssp C-HHHHHHHHHHHEEE---EEEEEEEEEB
T ss_pred c-HHHHHHHHHHHcCC---CeEEEEEeCC
Confidence 3 46899999999999 8998887654
No 125
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.19 E-value=9.5e-11 Score=98.78 Aligned_cols=98 Identities=12% Similarity=0.149 Sum_probs=80.4
Q ss_pred HHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC---Cc
Q 037127 186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP---PA 256 (307)
Q Consensus 186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p---~~ 256 (307)
++..+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..++++++.+|+.+..+ .|
T Consensus 69 ~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 69 MTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence 444444 566789999999999999999998 678999999 888888876 24589999999988432 59
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
|+|++..++|++++ ++++.|+| ||++++.-.
T Consensus 145 D~i~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~ 175 (210)
T 3lbf_A 145 DAIIVTAAPPEIPT--------ALMTQLDE---GGILVLPVG 175 (210)
T ss_dssp EEEEESSBCSSCCT--------HHHHTEEE---EEEEEEEEC
T ss_pred cEEEEccchhhhhH--------HHHHhccc---CcEEEEEEc
Confidence 99999999998886 46788999 898888654
No 126
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.19 E-value=3.9e-11 Score=102.90 Aligned_cols=99 Identities=15% Similarity=0.088 Sum_probs=72.9
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc--hHHHHhc---hh-----cCCCeEEEecCCCCCCCC--ccEEEec
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL--PHVVNGL---ES-----DLANLKYVGGDMFEAIPP--ADAVVLK 262 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl--~~~~~~a---~~-----~~~rv~~~~~d~~~~~p~--~D~i~~~ 262 (307)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.| ++ ...+++|..+|+.+- |. +|.+.+.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGGGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhhccCeEEEE
Confidence 4567899999999999999999999999999999 3455554 43 345799999999773 31 3555444
Q ss_pred hhhccCChhH------HHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 263 WILHDWNDEE------CVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 263 ~vLh~~~~~~------~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
.+.+.|+... ...+|++++++||| ||+++|..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~i~~ 139 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKK---EAHFEFVT 139 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEE---EEEEEEEE
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCC---CcEEEEEE
Confidence 4444444321 13689999999999 99998843
No 127
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.19 E-value=6.3e-11 Score=99.59 Aligned_cols=92 Identities=20% Similarity=0.236 Sum_probs=76.3
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC--CccEEEechhhccC
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--PADAVVLKWILHDW 268 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~~ 268 (307)
..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ...+++++.+|+.+..+ .||+|++..+ +
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~-- 142 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-A-- 142 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-S--
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-C--
Confidence 57999999999999999999999999999999 788888776 23459999999988433 5999987542 2
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 269 NDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 269 ~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
+ ...+++++++.|+| ||++++..
T Consensus 143 -~--~~~~l~~~~~~L~~---gG~l~~~~ 165 (207)
T 1jsx_A 143 -S--LNDMVSWCHHLPGE---QGRFYALK 165 (207)
T ss_dssp -S--HHHHHHHHTTSEEE---EEEEEEEE
T ss_pred -C--HHHHHHHHHHhcCC---CcEEEEEe
Confidence 2 35899999999999 88888874
No 128
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.19 E-value=1.2e-11 Score=102.27 Aligned_cols=97 Identities=13% Similarity=0.062 Sum_probs=77.9
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----c--CCCeEEEecCCCCC-CC-CccEEEechh
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----D--LANLKYVGGDMFEA-IP-PADAVVLKWI 264 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~--~~rv~~~~~d~~~~-~p-~~D~i~~~~v 264 (307)
+..+.+|||||||+|-++..++...|+++++++|+ +.+++.+++ . ..++++ .|.... .+ .||++++..+
T Consensus 47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~ 124 (200)
T 3fzg_A 47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM 124 (200)
T ss_dssp SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence 35578999999999999999999999999999999 889998887 2 235666 666653 33 3999999999
Q ss_pred hccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
||+. ++ ....+.+++++|+| ||.++-++
T Consensus 125 LHlL-~~-~~~al~~v~~~L~p---ggvfISfp 152 (200)
T 3fzg_A 125 LPVL-KQ-QDVNILDFLQLFHT---QNFVISFP 152 (200)
T ss_dssp HHHH-HH-TTCCHHHHHHTCEE---EEEEEEEE
T ss_pred HHhh-hh-hHHHHHHHHHHhCC---CCEEEEeC
Confidence 9999 43 24556699999999 66666655
No 129
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.18 E-value=1e-10 Score=99.00 Aligned_cols=101 Identities=13% Similarity=0.110 Sum_probs=81.7
Q ss_pred HHHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC---
Q 037127 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--- 254 (307)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--- 254 (307)
.++..+. ..+..+|||||||+|.++..+++.. |+.+++++|. +.+++.+++ ..+++++..+|+..+.+
T Consensus 68 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 145 (215)
T 2yxe_A 68 MMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA 145 (215)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred HHHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence 3444444 4567799999999999999999987 6689999999 888888876 23679999999876543
Q ss_pred CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.||+|++..++|++++ ++++.|+| ||++++...
T Consensus 146 ~fD~v~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~ 178 (215)
T 2yxe_A 146 PYDRIYTTAAGPKIPE--------PLIRQLKD---GGKLLMPVG 178 (215)
T ss_dssp CEEEEEESSBBSSCCH--------HHHHTEEE---EEEEEEEES
T ss_pred CeeEEEECCchHHHHH--------HHHHHcCC---CcEEEEEEC
Confidence 5999999999998873 67889999 899888753
No 130
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.17 E-value=1.5e-11 Score=107.23 Aligned_cols=100 Identities=16% Similarity=0.151 Sum_probs=80.6
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCC-------------------------------
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLA------------------------------- 240 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~------------------------------- 240 (307)
.+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ...
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4467899999999999999988765 58999999 788888866 221
Q ss_pred -Ce-EEEecCCCCC-C------CCccEEEechhhccCChh--HHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 241 -NL-KYVGGDMFEA-I------PPADAVVLKWILHDWNDE--ECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 241 -rv-~~~~~d~~~~-~------p~~D~i~~~~vLh~~~~~--~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
++ +++.+|+.+. . ..||+|++..++|+.+.. +...+|++++++|+| ||++++.+.
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~ 199 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP---GGFLVMVDA 199 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC---CcEEEEEec
Confidence 28 9999999873 1 249999999999954332 557899999999999 899998874
No 131
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.17 E-value=3.4e-11 Score=102.63 Aligned_cols=101 Identities=12% Similarity=0.196 Sum_probs=81.2
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC---CC------CCcc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE---AI------PPAD 257 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~---~~------p~~D 257 (307)
.+..+|||||||+|..+..+++..+ +.+++++|+ +.+++.+++ ..++|+++.+|+.+ .. ..||
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 4578999999999999999999875 789999999 888888876 34689999999744 22 2599
Q ss_pred EEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 258 AVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 258 ~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
+|++....+.+.+. ..+++.+ +.|+| ||.+++-+..++
T Consensus 137 ~V~~d~~~~~~~~~--~~~~~~~-~~Lkp---gG~lv~~~~~~~ 174 (221)
T 3u81_A 137 MVFLDHWKDRYLPD--TLLLEKC-GLLRK---GTVLLADNVIVP 174 (221)
T ss_dssp EEEECSCGGGHHHH--HHHHHHT-TCCCT---TCEEEESCCCCC
T ss_pred EEEEcCCcccchHH--HHHHHhc-cccCC---CeEEEEeCCCCc
Confidence 99998877766443 4678877 99998 888887766654
No 132
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.17 E-value=3.3e-11 Score=106.92 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=74.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCC---------------------------------
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLA--------------------------------- 240 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~--------------------------------- 240 (307)
+..+|||||||+|.+. .++...+..+++++|+ +.+++.+++ ...
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 5679999999999944 3444444569999999 888887764 110
Q ss_pred -CeEEEecCCCCC-------CCC--ccEEEechhhccCChh--HHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 241 -NLKYVGGDMFEA-------IPP--ADAVVLKWILHDWNDE--ECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 241 -rv~~~~~d~~~~-------~p~--~D~i~~~~vLh~~~~~--~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.++++.+|+.+. ++. ||+|++..+||+.+.+ +..++|++++++|+| ||++++.+.
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~~~~~ 216 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGA 216 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEEe
Confidence 145677798762 222 9999999999985433 567999999999999 999998754
No 133
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.17 E-value=2.1e-10 Score=95.21 Aligned_cols=101 Identities=9% Similarity=0.003 Sum_probs=80.9
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC---C--CCccEEEech
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA---I--PPADAVVLKW 263 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~---~--p~~D~i~~~~ 263 (307)
.+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..++++++++|+.+. . ..||+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 35678999999999999988874 5568999999 888888876 236899999998772 3 2599999988
Q ss_pred hhccCChhHHHHHHHHHHH--hccCCCCCcEEEEEeeec
Q 037127 264 ILHDWNDEECVKILKKCKE--AITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 264 vLh~~~~~~~~~~L~~~~~--~L~p~~~gg~lli~e~~~ 300 (307)
..|. ..++..++++.+.+ .|+| ||++++.....
T Consensus 122 p~~~-~~~~~~~~l~~~~~~~~L~p---gG~l~~~~~~~ 156 (189)
T 3p9n_A 122 PYNV-DSADVDAILAALGTNGWTRE---GTVAVVERATT 156 (189)
T ss_dssp CTTS-CHHHHHHHHHHHHHSSSCCT---TCEEEEEEETT
T ss_pred CCCc-chhhHHHHHHHHHhcCccCC---CeEEEEEecCC
Confidence 7663 34556789999999 9999 89888866543
No 134
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.16 E-value=5.4e-11 Score=101.29 Aligned_cols=100 Identities=12% Similarity=0.133 Sum_probs=81.3
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---C-----CCcc
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I-----PPAD 257 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~-----p~~D 257 (307)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ ..++++++.+|+.+. . ..||
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 34678999999999999999999998 789999999 888888775 356899999998762 1 3499
Q ss_pred EEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 258 AVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 258 ~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
+|++... ......+++++.+.|+| ||.+++-+..+.
T Consensus 136 ~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~ 171 (223)
T 3duw_A 136 FIFIDAD-----KQNNPAYFEWALKLSRP---GTVIIGDNVVRE 171 (223)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTCCT---TCEEEEESCSGG
T ss_pred EEEEcCC-----cHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence 9987654 23346899999999999 898887766654
No 135
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.16 E-value=1.5e-10 Score=102.78 Aligned_cols=95 Identities=16% Similarity=0.194 Sum_probs=76.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC-Cc---cEEEec--
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP-PA---DAVVLK-- 262 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p-~~---D~i~~~-- 262 (307)
...+|||+|||+|.++..+++. |+.+++++|+ +.+++.+++ ..+|++|+.+|++++.+ .| |+|++.
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 4568999999999999999999 9999999999 888888876 34579999999998654 47 999986
Q ss_pred ----------hhhccCCh------hHHHHHHHHHH-HhccCCCCCcEEEE
Q 037127 263 ----------WILHDWND------EECVKILKKCK-EAITSNSKIGKVII 295 (307)
Q Consensus 263 ----------~vLh~~~~------~~~~~~L~~~~-~~L~p~~~gg~lli 295 (307)
.+. +.|. .+...+++++. +.++| ||++++
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~p---gG~l~~ 247 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTS---GKIVLM 247 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCT---TCEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCC---CCEEEE
Confidence 233 2222 11237899999 99998 888776
No 136
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.16 E-value=1.2e-10 Score=104.29 Aligned_cols=99 Identities=14% Similarity=0.198 Sum_probs=79.8
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC---CCC--CccEEEechhh
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE---AIP--PADAVVLKWIL 265 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~---~~p--~~D~i~~~~vL 265 (307)
..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+|++++.+|..+ ..+ .||+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 34899999999999999999999999999999 889999987 24799999999876 333 59999987655
Q ss_pred ccCChhH--HHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 266 HDWNDEE--CVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 266 h~~~~~~--~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
+...... ...+++.++++|+| ||.+++.-.
T Consensus 170 ~~~~~~~L~t~efl~~~~r~Lkp---gGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAP---GGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCC---CcEEEEEec
Confidence 5332221 15899999999999 787776543
No 137
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.16 E-value=1e-10 Score=106.91 Aligned_cols=97 Identities=15% Similarity=0.195 Sum_probs=78.3
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEechh
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKWI 264 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~v 264 (307)
..+..+|||||||+|.++..+++. +..+++++|++++++.|++ ..++|+++.+|+.+ +.| .+|+|++..+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 345679999999999999999997 6679999999768887776 45679999999998 555 5999998776
Q ss_pred hccC-ChhHHHHHHHHHHHhccCCCCCcEEE
Q 037127 265 LHDW-NDEECVKILKKCKEAITSNSKIGKVI 294 (307)
Q Consensus 265 Lh~~-~~~~~~~~L~~~~~~L~p~~~gg~ll 294 (307)
.|.+ ..+....+|+.+.+.|+| ||+++
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~Lkp---gG~li 170 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAP---DGLIF 170 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred cccccCchhHHHHHHHHHHhCCC---CCEEc
Confidence 5543 223346889999999999 88875
No 138
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.15 E-value=1.4e-10 Score=99.60 Aligned_cols=99 Identities=11% Similarity=0.172 Sum_probs=81.5
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---C--C-CccEEE
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I--P-PADAVV 260 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~--p-~~D~i~ 260 (307)
..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ ..++++++.+|+.+. . + .||+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 34567999999999999999999999999999999 888888876 236899999999872 2 2 599999
Q ss_pred echhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 261 LKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 261 ~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
+....+ ....+|+++.+.|+| ||++++.+..+
T Consensus 132 ~~~~~~-----~~~~~l~~~~~~L~p---gG~lv~~~~~~ 163 (233)
T 2gpy_A 132 IDAAKG-----QYRRFFDMYSPMVRP---GGLILSDNVLF 163 (233)
T ss_dssp EEGGGS-----CHHHHHHHHGGGEEE---EEEEEEETTTC
T ss_pred ECCCHH-----HHHHHHHHHHHHcCC---CeEEEEEcCCc
Confidence 987765 235889999999999 88888865443
No 139
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.15 E-value=3.5e-11 Score=105.46 Aligned_cols=101 Identities=17% Similarity=0.103 Sum_probs=76.9
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c---------------------------------C
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D---------------------------------L 239 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~---------------------------------~ 239 (307)
.+..+|||||||+|.++..++...- .+++++|+ +.+++.+++ . .
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 4567899999999988776665431 26999999 888887764 1 0
Q ss_pred CCeE-EEecCCCCC-------CCCccEEEechhhccC-Ch-hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 240 ANLK-YVGGDMFEA-------IPPADAVVLKWILHDW-ND-EECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 240 ~rv~-~~~~d~~~~-------~p~~D~i~~~~vLh~~-~~-~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
.++. ++.+|+.+. .+.||+|+++.+||+. ++ ++...+|++++++||| ||++++.+..
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP---GG~li~~~~~ 199 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTL 199 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEES
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC---CcEEEEEEee
Confidence 1243 889999873 2259999999999974 32 4567899999999999 9999998653
No 140
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.15 E-value=1.7e-10 Score=101.02 Aligned_cols=101 Identities=15% Similarity=0.206 Sum_probs=78.6
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cC--------CCeEEEecCCCCC--------CC-
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DL--------ANLKYVGGDMFEA--------IP- 254 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~--------~rv~~~~~d~~~~--------~p- 254 (307)
..+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ .. +|++++.+|+.+. ++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 34567999999999999999999999999999999 888888876 22 3699999999874 23
Q ss_pred -CccEEEechhhcc----------------CChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 255 -PADAVVLKWILHD----------------WNDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 255 -~~D~i~~~~vLh~----------------~~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
.||+|++.-..+. ........+++.+.+.|+| ||+++++-
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~ 170 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS---GGQLSLIS 170 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC---CCEEEEEE
Confidence 4999999732221 1222356889999999999 89988753
No 141
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.15 E-value=6.2e-11 Score=102.37 Aligned_cols=94 Identities=20% Similarity=0.283 Sum_probs=78.0
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CC----C-CccEEEec
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AI----P-PADAVVLK 262 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~----p-~~D~i~~~ 262 (307)
.+..+|||||||+|.++..+++..|+.+++++|+ +.+++.+++ ..++|+++.+|+.+ +. + .||+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4567999999999999999999999999999999 778888876 23469999999866 32 2 49999987
Q ss_pred hhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 263 WILHDWNDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 263 ~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
.+ .+ ...+++.++++|+| ||++++..
T Consensus 149 ~~----~~--~~~~l~~~~~~Lkp---gG~l~~~~ 174 (240)
T 1xdz_A 149 AV----AR--LSVLSELCLPLVKK---NGLFVALK 174 (240)
T ss_dssp CC----SC--HHHHHHHHGGGEEE---EEEEEEEE
T ss_pred cc----CC--HHHHHHHHHHhcCC---CCEEEEEe
Confidence 63 32 35899999999999 89998875
No 142
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.15 E-value=1.3e-10 Score=95.12 Aligned_cols=99 Identities=16% Similarity=0.219 Sum_probs=79.3
Q ss_pred HHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC--Ccc
Q 037127 186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--PAD 257 (307)
Q Consensus 186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--~~D 257 (307)
++..+. ..+..+|||+|||+|.++..+++ +..+++++|. +.+++.+++ ..++++++.+|+.++.+ .+|
T Consensus 27 ~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 27 SIGKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 344444 45667999999999999999999 7889999999 888888876 23689999999987544 599
Q ss_pred EEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 258 AVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 258 ~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
+|++..+ .....+++++++. | ||++++....
T Consensus 103 ~i~~~~~------~~~~~~l~~~~~~--~---gG~l~~~~~~ 133 (183)
T 2yxd_A 103 KAFIGGT------KNIEKIIEILDKK--K---INHIVANTIV 133 (183)
T ss_dssp EEEECSC------SCHHHHHHHHHHT--T---CCEEEEEESC
T ss_pred EEEECCc------ccHHHHHHHHhhC--C---CCEEEEEecc
Confidence 9999988 2235789999888 6 8999988743
No 143
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.14 E-value=1.3e-10 Score=100.30 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=77.7
Q ss_pred CCCeEEEecCCchHHHHHHHHH----CCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCC--C---C--CccEEEech
Q 037127 196 GLNSLVDVGGATGTVAKAIAKA----FPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEA--I---P--PADAVVLKW 263 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~----~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~--~---p--~~D~i~~~~ 263 (307)
+..+|||||||+|..+..+++. +|+.+++++|+ +.+++.++...++|+++.+|+.+. + . .||+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 3569999999999999999998 78899999999 778877765567999999999873 1 2 489998766
Q ss_pred hhccCChhHHHHHHHHHHH-hccCCCCCcEEEEEee
Q 037127 264 ILHDWNDEECVKILKKCKE-AITSNSKIGKVIIIDM 298 (307)
Q Consensus 264 vLh~~~~~~~~~~L~~~~~-~L~p~~~gg~lli~e~ 298 (307)
. |. +...+|+++++ .|+| ||++++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~Lkp---GG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLEE---GDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCCT---TCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCCC---CCEEEEEeC
Confidence 5 52 34578999997 9999 899998663
No 144
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.14 E-value=1.5e-10 Score=99.60 Aligned_cols=101 Identities=18% Similarity=0.241 Sum_probs=80.8
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC---
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP--- 254 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p--- 254 (307)
..++..+. ..+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..+++++..+|+..+++
T Consensus 81 ~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 81 AIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 34444444 55677999999999999999999988 89999998 888888876 23569999999855544
Q ss_pred CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.||+|++..+++++++ ++.+.|+| ||++++.-.
T Consensus 158 ~fD~Ii~~~~~~~~~~--------~~~~~L~p---gG~lvi~~~ 190 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE--------PLIEQLKI---GGKLIIPVG 190 (235)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred CccEEEECCcHHHHHH--------HHHHhcCC---CcEEEEEEe
Confidence 3899999999998874 57788999 888887644
No 145
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.14 E-value=1.5e-10 Score=95.54 Aligned_cols=96 Identities=25% Similarity=0.301 Sum_probs=79.8
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCC---CCccEEEech
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAI---PPADAVVLKW 263 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~---p~~D~i~~~~ 263 (307)
..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++ ..+++++..+|+.++. +.+|+|++..
T Consensus 31 ~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 108 (192)
T 1l3i_A 31 PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGG 108 (192)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESC
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEECC
Confidence 4567799999999999999999987 78999999 888888776 2268999999987632 4699999998
Q ss_pred hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
++|++ ..+|++++++|+| ||++++....
T Consensus 109 ~~~~~-----~~~l~~~~~~l~~---gG~l~~~~~~ 136 (192)
T 1l3i_A 109 SGGEL-----QEILRIIKDKLKP---GGRIIVTAIL 136 (192)
T ss_dssp CTTCH-----HHHHHHHHHTEEE---EEEEEEEECB
T ss_pred chHHH-----HHHHHHHHHhcCC---CcEEEEEecC
Confidence 87643 5889999999999 8998887653
No 146
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.13 E-value=1.7e-10 Score=99.55 Aligned_cols=99 Identities=11% Similarity=0.187 Sum_probs=74.7
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----------cCCCeEEEecCCCC--C--CC--Cc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----------DLANLKYVGGDMFE--A--IP--PA 256 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------~~~rv~~~~~d~~~--~--~p--~~ 256 (307)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++ ...+|+++.+|+.+ + ++ .+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4566899999999999999999999999999999 778876653 24689999999986 2 33 48
Q ss_pred cEEEechhhccCChh-H------HHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 257 DAVVLKWILHDWNDE-E------CVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 257 D~i~~~~vLh~~~~~-~------~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
|.|++...-. |... . ...+|++++++|+| ||++++..
T Consensus 125 D~v~~~~~dp-~~k~~h~krr~~~~~~l~~~~~~Lkp---GG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDP-HFKRTKHKWRIISPTLLAEYAYVLRV---GGLVYTIT 168 (235)
T ss_dssp EEEEEESCC------------CCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred eEEEEeCCCc-hhhhhhhhhhhhhHHHHHHHHHHCCC---CCEEEEEe
Confidence 9887643322 2211 0 13699999999999 89888763
No 147
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.13 E-value=1e-10 Score=99.67 Aligned_cols=99 Identities=12% Similarity=0.095 Sum_probs=80.7
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---C------CCcc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I------PPAD 257 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~------p~~D 257 (307)
.+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ ..++++++.+|+.+. . ..||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 4567999999999999999999988 789999999 888888876 346899999998652 1 4599
Q ss_pred EEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 258 AVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 258 ~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
+|++... ......+++++.+.|+| ||.+++-+..++
T Consensus 143 ~v~~~~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~ 178 (225)
T 3tr6_A 143 LIYIDAD-----KANTDLYYEESLKLLRE---GGLIAVDNVLRR 178 (225)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence 9986443 33456899999999999 888888777654
No 148
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.13 E-value=2.8e-10 Score=97.26 Aligned_cols=100 Identities=17% Similarity=0.133 Sum_probs=80.5
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCCCC---Cc
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEAIP---PA 256 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~~p---~~ 256 (307)
..++..+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ...+++++.+|+.+..+ .|
T Consensus 60 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~f 135 (231)
T 1vbf_A 60 IFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY 135 (231)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCc
Confidence 34444444 4567799999999999999999986 68999999 888888876 12289999999987433 49
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
|+|++..++|++++ ++.+.|+| ||++++...
T Consensus 136 D~v~~~~~~~~~~~--------~~~~~L~p---gG~l~~~~~ 166 (231)
T 1vbf_A 136 DRVVVWATAPTLLC--------KPYEQLKE---GGIMILPIG 166 (231)
T ss_dssp EEEEESSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred cEEEECCcHHHHHH--------HHHHHcCC---CcEEEEEEc
Confidence 99999999998874 47789999 899988764
No 149
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.13 E-value=1.2e-10 Score=98.43 Aligned_cols=86 Identities=16% Similarity=0.202 Sum_probs=70.6
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEecCCCC-CCC--CccEEEechhhccCChh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFE-AIP--PADAVVLKWILHDWNDE 271 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~~ 271 (307)
.+..+|||||||+|.++..++ .+++++|+.+. ++++..+|+.+ +.+ .||+|++..++| +++
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~---------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~~~- 129 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR-----NPVHCFDLASL---------DPRVTVCDMAQVPLEDESVDVAVFCLSLM-GTN- 129 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS---------STTEEESCTTSCSCCTTCEEEEEEESCCC-SSC-
T ss_pred CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC---------CceEEEeccccCCCCCCCEeEEEEehhcc-ccC-
Confidence 456789999999999998873 58999998432 57789999987 444 499999999998 444
Q ss_pred HHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 272 ECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 272 ~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
...+|++++++|+| ||+++|.+...
T Consensus 130 -~~~~l~~~~~~L~~---gG~l~i~~~~~ 154 (215)
T 2zfu_A 130 -IRDFLEEANRVLKP---GGLLKVAEVSS 154 (215)
T ss_dssp -HHHHHHHHHHHEEE---EEEEEEEECGG
T ss_pred -HHHHHHHHHHhCCC---CeEEEEEEcCC
Confidence 46899999999999 99999988654
No 150
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.13 E-value=2.2e-11 Score=113.72 Aligned_cols=106 Identities=13% Similarity=0.123 Sum_probs=80.9
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC------CC--
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE------AI-- 253 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~------~~-- 253 (307)
...+++.+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+......+.. ++
T Consensus 96 ~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~ 169 (416)
T 4e2x_A 96 ARDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK--GIRVRTDFFEKATADDVRRTE 169 (416)
T ss_dssp HHHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT--TCCEECSCCSHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc--CCCcceeeechhhHhhcccCC
Confidence 355666665 566789999999999999999987 458999999 7888888842 23333222221 12
Q ss_pred CCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 254 PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 254 p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
..||+|++.+++|++++. ..+|++++++|+| ||++++..+.
T Consensus 170 ~~fD~I~~~~vl~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~ 210 (416)
T 4e2x_A 170 GPANVIYAANTLCHIPYV--QSVLEGVDALLAP---DGVFVFEDPY 210 (416)
T ss_dssp CCEEEEEEESCGGGCTTH--HHHHHHHHHHEEE---EEEEEEEEEC
T ss_pred CCEEEEEECChHHhcCCH--HHHHHHHHHHcCC---CeEEEEEeCC
Confidence 259999999999999865 5899999999999 8998887553
No 151
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.12 E-value=2.1e-10 Score=98.09 Aligned_cols=101 Identities=18% Similarity=0.171 Sum_probs=78.2
Q ss_pred ccCCCeEEEecCC-chHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCC--CCCC--CccEEEech
Q 037127 194 FEGLNSLVDVGGA-TGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMF--EAIP--PADAVVLKW 263 (307)
Q Consensus 194 ~~~~~~vlDvGgG-~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~--~~~p--~~D~i~~~~ 263 (307)
..+..+|||+||| +|.++..+++.. +.+++++|+ +.+++.+++ ..-+++++.+|+. .+.+ .||+|++.-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4567899999999 999999999987 679999999 888888876 2338999999963 3444 599999886
Q ss_pred hhccCChhH-----------------HHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 264 ILHDWNDEE-----------------CVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 264 vLh~~~~~~-----------------~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
..+..++.+ ...+|+++.+.|+| ||+++++-+
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~ 180 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNP---GGKVALYLP 180 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEE---EEEEEEEEE
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCC---CeEEEEEec
Confidence 665443321 26899999999999 899988643
No 152
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.12 E-value=2.5e-10 Score=97.94 Aligned_cols=95 Identities=13% Similarity=0.128 Sum_probs=73.9
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCC--C---C-CccEEEec
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEA--I---P-PADAVVLK 262 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~--~---p-~~D~i~~~ 262 (307)
+.+..+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.+.+ ...+++++.+|+.++ . + .+|+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 4567799999999999999999986 7789999999 655444433 337899999999873 2 2 48999985
Q ss_pred hhhccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127 263 WILHDWNDEECVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 263 ~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli 295 (307)
.. ..+....++++++++|+| ||+++|
T Consensus 155 ~~----~~~~~~~~~~~~~~~Lkp---gG~l~i 180 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRN---GGHFVI 180 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEE---EEEEEE
T ss_pred CC----CccHHHHHHHHHHHHcCC---CeEEEE
Confidence 43 223345779999999999 888887
No 153
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.12 E-value=5.2e-10 Score=101.80 Aligned_cols=105 Identities=16% Similarity=0.193 Sum_probs=80.0
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCC-CCC--
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIP-- 254 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p-- 254 (307)
+.+.+... ..+..+|||||||+|.++..+++. +..+++++|..++++.+++ ..++++++.+|+.+ +.|
T Consensus 54 ~~i~~~~~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 130 (340)
T 2fyt_A 54 DFIYQNPH--IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVE 130 (340)
T ss_dssp HHHHHCGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCS
T ss_pred HHHHhhhh--hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCC
Confidence 33444333 456779999999999999999987 4568999999668888776 24799999999987 555
Q ss_pred CccEEEechhhccC-ChhHHHHHHHHHHHhccCCCCCcEEE
Q 037127 255 PADAVVLKWILHDW-NDEECVKILKKCKEAITSNSKIGKVI 294 (307)
Q Consensus 255 ~~D~i~~~~vLh~~-~~~~~~~~L~~~~~~L~p~~~gg~ll 294 (307)
.+|+|++..+.+.+ .......+|+++++.|+| ||+++
T Consensus 131 ~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkp---gG~li 168 (340)
T 2fyt_A 131 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAK---GGSVY 168 (340)
T ss_dssp CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred cEEEEEEcCchhhccCHHHHHHHHHHHHhhcCC---CcEEE
Confidence 49999987743332 223346799999999999 88876
No 154
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.12 E-value=3.5e-10 Score=104.40 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=81.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCC-CC--CccEEEechhhcc
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEA-IP--PADAVVLKWILHD 267 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~-~p--~~D~i~~~~vLh~ 267 (307)
+..+|||+|||+|.++..+++. +.+++++|. +.+++.+++ ..-+++++.+|+.+. .+ .||+|++.-++|.
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5679999999999999999998 569999999 888888876 333599999999983 33 5999999999886
Q ss_pred ---CChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 268 ---WNDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 268 ---~~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
...+....+++++++.|+| ||+++|+.
T Consensus 311 ~~~~~~~~~~~~l~~~~~~Lkp---GG~l~iv~ 340 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRP---GGVFFLVS 340 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcCc---CcEEEEEE
Confidence 3345667999999999999 89998864
No 155
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.11 E-value=1.7e-10 Score=106.48 Aligned_cols=102 Identities=12% Similarity=0.126 Sum_probs=81.0
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCC-CCC-CccEEEechhh
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIP-PADAVVLKWIL 265 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p-~~D~i~~~~vL 265 (307)
..+..+|||||||+|.++..++++. ..+++++|...+++.+++ ..++|+++.+|+.+ +.| .+|+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 4567899999999999999999973 348999999877777765 45789999999987 454 59999997766
Q ss_pred ccCCh-hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 266 HDWND-EECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 266 h~~~~-~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
|.... .....+++++.+.|+| ||.+++.+..
T Consensus 140 ~~l~~e~~~~~~l~~~~~~Lkp---gG~li~~~~~ 171 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKP---TGVMYPSHAR 171 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEE---EEEEESSEEE
T ss_pred hcccchHHHHHHHHHHHhhCCC---CeEEEEecCe
Confidence 65543 3356789999999999 8888765543
No 156
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.11 E-value=1.2e-10 Score=101.42 Aligned_cols=95 Identities=16% Similarity=0.104 Sum_probs=78.4
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CC-----CCccEEEec
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AI-----PPADAVVLK 262 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~-----p~~D~i~~~ 262 (307)
....+|||||||+|..+..++..+|+.+++++|. +.+++.+++ ...+|+++++|+.+ +. ..||+|+++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4567999999999999999999999999999999 888888876 34569999999876 22 259999987
Q ss_pred hhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 263 WILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 263 ~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.+- + ...+++.+.+.|+| ||+++++..
T Consensus 159 a~~----~--~~~ll~~~~~~Lkp---gG~l~~~~g 185 (249)
T 3g89_A 159 AVA----P--LCVLSELLLPFLEV---GGAAVAMKG 185 (249)
T ss_dssp SSC----C--HHHHHHHHGGGEEE---EEEEEEEEC
T ss_pred CcC----C--HHHHHHHHHHHcCC---CeEEEEEeC
Confidence 542 2 24789999999999 999988764
No 157
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.11 E-value=2.6e-10 Score=97.35 Aligned_cols=94 Identities=9% Similarity=0.057 Sum_probs=78.4
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC---CccEEEechh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP---PADAVVLKWI 264 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p---~~D~i~~~~v 264 (307)
.+..+|+|||||+|..+..+++..|..+++++|+ +..++.|++ ..++|++..+|.+++++ .||+|++..+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 4567999999999999999999999999999999 788888876 45789999999998665 4999987765
Q ss_pred hccCChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127 265 LHDWNDEECVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli 295 (307)
. .+-...+|..+.+.|++ +|++++
T Consensus 94 G----g~~i~~Il~~~~~~L~~---~~~lVl 117 (225)
T 3kr9_A 94 G----GRLIARILEEGLGKLAN---VERLIL 117 (225)
T ss_dssp C----HHHHHHHHHHTGGGCTT---CCEEEE
T ss_pred C----hHHHHHHHHHHHHHhCC---CCEEEE
Confidence 3 23356899999999998 777665
No 158
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.10 E-value=3.1e-10 Score=98.56 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=85.3
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHH-CCCCeEEEecc-hHHHHhchh----c--CCCeEEEecCCCCC-CC
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA-FPNLECTDFDL-PHVVNGLES----D--LANLKYVGGDMFEA-IP 254 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~----~--~~rv~~~~~d~~~~-~p 254 (307)
..++..++ ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ . .+++++..+|+.+. ++
T Consensus 86 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 86 SAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred HHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence 34555555 566789999999999999999998 67889999999 888888876 2 26899999999874 55
Q ss_pred --CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 255 --PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 255 --~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
.+|+|++ ++++. ..+|+++.++|+| ||+++++.+..
T Consensus 164 ~~~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~~ 201 (258)
T 2pwy_A 164 EAAYDGVAL-----DLMEP--WKVLEKAALALKP---DRFLVAYLPNI 201 (258)
T ss_dssp TTCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEEESCH
T ss_pred CCCcCEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEEeCCH
Confidence 4999997 34544 3789999999999 99999988653
No 159
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.10 E-value=1.8e-10 Score=102.70 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=75.7
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----c------CCCeEEEecCCCCCC---C-CccEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----D------LANLKYVGGDMFEAI---P-PADAV 259 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~------~~rv~~~~~d~~~~~---p-~~D~i 259 (307)
.++++|||||||+|..+..+++..|..+++++|+ +.+++.+++ . .+|++++.+|..+.. + .||+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 4578999999999999999999878889999999 889998876 1 459999999988732 2 49999
Q ss_pred EechhhccCChhHH--HHHHHHHHHhccCCCCCcEEEEEe
Q 037127 260 VLKWILHDWNDEEC--VKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 260 ~~~~vLh~~~~~~~--~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
++...-+.-+.... ..+++.++++|+| ||.+++.-
T Consensus 162 i~D~~~p~~~~~~l~~~~f~~~~~~~Lkp---gG~lv~~~ 198 (294)
T 3adn_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNP---GGIFVAQN 198 (294)
T ss_dssp EECC----------CCHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCccCcchhccHHHHHHHHHHhcCC---CCEEEEec
Confidence 99655443232222 5799999999999 88877754
No 160
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.10 E-value=2.9e-10 Score=97.17 Aligned_cols=95 Identities=11% Similarity=0.108 Sum_probs=76.6
Q ss_pred CeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cC-CCeEEEecCCCC---CC-C-CccEEEech
Q 037127 198 NSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DL-ANLKYVGGDMFE---AI-P-PADAVVLKW 263 (307)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~-~rv~~~~~d~~~---~~-p-~~D~i~~~~ 263 (307)
.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .. ++|+++.+|..+ .. + .||+|++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 3999999999999999999875 789999999 888888876 23 689999999866 23 2 599998764
Q ss_pred hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
.. .....+++.+.+.|+| ||.+++-+..+
T Consensus 138 ~~-----~~~~~~l~~~~~~Lkp---GG~lv~dn~~~ 166 (221)
T 3dr5_A 138 SP-----MDLKALVDAAWPLLRR---GGALVLADALL 166 (221)
T ss_dssp CT-----TTHHHHHHHHHHHEEE---EEEEEETTTTG
T ss_pred cH-----HHHHHHHHHHHHHcCC---CcEEEEeCCCC
Confidence 32 2335789999999999 78877766655
No 161
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.10 E-value=4.8e-10 Score=95.72 Aligned_cols=96 Identities=16% Similarity=0.190 Sum_probs=75.2
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCC-----CC-CccEEEec
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEA-----IP-PADAVVLK 262 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~-----~p-~~D~i~~~ 262 (307)
..+..+|||+|||+|.++..+++.. |+.+++++|. +.+++.+.+ ..++++++.+|+.+. .+ .+|+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 4566799999999999999999885 6679999999 767766654 337899999999872 23 49999965
Q ss_pred hhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 263 WILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 263 ~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
.. .......++++++++|+| ||++++.
T Consensus 151 ~~----~~~~~~~~l~~~~~~Lkp---gG~l~~~ 177 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKR---GGYGMIA 177 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CC----CHhHHHHHHHHHHHhcCC---CCEEEEE
Confidence 43 222334569999999999 8998887
No 162
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.09 E-value=1.8e-10 Score=103.20 Aligned_cols=100 Identities=13% Similarity=0.071 Sum_probs=77.4
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c--------CCCeEEEecCCCCC----CC-CccEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D--------LANLKYVGGDMFEA----IP-PADAV 259 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~--------~~rv~~~~~d~~~~----~p-~~D~i 259 (307)
.++.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ . .+|++++.+|+.+. .+ .||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4567999999999999999999878889999999 888888876 2 47899999998761 12 49999
Q ss_pred EechhhccCChhHH--HHHHHHHHHhccCCCCCcEEEEEe
Q 037127 260 VLKWILHDWNDEEC--VKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 260 ~~~~vLh~~~~~~~--~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
++....+.++.... ..++++++++|+| ||++++..
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 210 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKP---DGICCNQG 210 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCC---CcEEEEec
Confidence 99877776654432 5889999999999 88888764
No 163
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.09 E-value=1e-10 Score=101.41 Aligned_cols=100 Identities=14% Similarity=0.198 Sum_probs=80.2
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC--C-C------CCcc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE--A-I------PPAD 257 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~--~-~------p~~D 257 (307)
.+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ ..++|+++.+|+.+ + . ..||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 4567999999999999999999986 789999999 777777765 34699999999876 2 2 3599
Q ss_pred EEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 258 AVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 258 ~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
+|++... ......+|+++.+.|+| ||.+++-+..+..
T Consensus 139 ~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~~g 175 (242)
T 3r3h_A 139 FIFIDAD-----KTNYLNYYELALKLVTP---KGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEESC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSSSS
T ss_pred EEEEcCC-----hHHhHHHHHHHHHhcCC---CeEEEEECCccCC
Confidence 9988653 33346789999999999 8888887766543
No 164
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.09 E-value=1.6e-10 Score=100.16 Aligned_cols=94 Identities=17% Similarity=0.263 Sum_probs=73.4
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----c---------CCCeEEEecCCCCC----CC--
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----D---------LANLKYVGGDMFEA----IP-- 254 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~---------~~rv~~~~~d~~~~----~p-- 254 (307)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ . .++++++.+|+.+. ++
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 4567899999999999999999999999999999 778877754 1 25899999999873 32
Q ss_pred CccEEEechhhccCChhHH-----------HHHHHHHHHhccCCCCCcEEEEE
Q 037127 255 PADAVVLKWILHDWNDEEC-----------VKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 255 ~~D~i~~~~vLh~~~~~~~-----------~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
.+|.|++. +++... ..+++++.++|+| ||.+++.
T Consensus 128 ~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkp---gG~l~~~ 172 (246)
T 2vdv_E 128 QLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKE---GGVVYTI 172 (246)
T ss_dssp CEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEE---EEEEEEE
T ss_pred ccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCC---CCEEEEE
Confidence 36766632 233211 3799999999999 8988885
No 165
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.09 E-value=1.5e-10 Score=97.82 Aligned_cols=98 Identities=14% Similarity=0.136 Sum_probs=78.3
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC--CC-CCccEEEech
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE--AI-PPADAVVLKW 263 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~--~~-p~~D~i~~~~ 263 (307)
.+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ ..++++++.+|..+ +. ++||+|++..
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~ 134 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC 134 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence 3567999999999999999999988 789999999 888888875 34689999999865 22 2399998863
Q ss_pred hhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 264 ILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 264 vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
. ......+++++++.|+| ||.+++.+..+
T Consensus 135 ~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~ 163 (210)
T 3c3p_A 135 D-----VFNGADVLERMNRCLAK---NALLIAVNALR 163 (210)
T ss_dssp T-----TSCHHHHHHHHGGGEEE---EEEEEEESSSS
T ss_pred C-----hhhhHHHHHHHHHhcCC---CeEEEEECccc
Confidence 2 22346899999999999 88887766544
No 166
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.09 E-value=4.4e-10 Score=101.20 Aligned_cols=101 Identities=14% Similarity=0.237 Sum_probs=81.4
Q ss_pred HHHHhccccccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCC---C
Q 037127 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAI---P 254 (307)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~---p 254 (307)
.++..+. ..+..+|||||||+|.++..+++..+ +.+++++|+ +.+++.+++ ..++++++.+|+.+.. .
T Consensus 66 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 3444444 55678999999999999999999887 478999999 888888876 2356999999998732 2
Q ss_pred CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.||+|++..++|+++ +++.+.|+| ||++++...
T Consensus 144 ~fD~Iv~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~~ 176 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVPIN 176 (317)
T ss_dssp CEEEEEECSBBSCCC--------HHHHHHEEE---EEEEEEEBC
T ss_pred CeEEEEEcCCHHHHH--------HHHHHhcCC---CcEEEEEEC
Confidence 599999999999887 457789999 899888753
No 167
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.08 E-value=4.1e-10 Score=101.97 Aligned_cols=97 Identities=14% Similarity=0.208 Sum_probs=76.9
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEechh
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKWI 264 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~v 264 (307)
..+..+|||||||+|.++..+++. +..+++++|.+++++.+++ ..++|+++.+|+.+ +.| .+|+|++..+
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence 345679999999999999999886 4568999999768877765 35789999999987 455 4999998866
Q ss_pred hccCC-hhHHHHHHHHHHHhccCCCCCcEEE
Q 037127 265 LHDWN-DEECVKILKKCKEAITSNSKIGKVI 294 (307)
Q Consensus 265 Lh~~~-~~~~~~~L~~~~~~L~p~~~gg~ll 294 (307)
.|.+. ......+|+++.+.|+| ||+++
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~Lkp---gG~li 142 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVE---GGLIF 142 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred hhhcccHHHHHHHHHHHHhhcCC---CeEEE
Confidence 55432 22345789999999999 88876
No 168
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.08 E-value=4.5e-10 Score=98.30 Aligned_cols=94 Identities=14% Similarity=0.228 Sum_probs=79.2
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCC--CccEEEechhhccCCh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIP--PADAVVLKWILHDWND 270 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~ 270 (307)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++...++.+..+|+.+ +++ .+|+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 4567999999999999999999988899999999 88888888755789999999976 444 49999986552
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 271 EECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 271 ~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
..+++++++|+| ||+++++.+..
T Consensus 159 ----~~l~~~~~~L~p---gG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKP---GGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEE---EEEEEEEEECT
T ss_pred ----hhHHHHHHhcCC---CcEEEEEEcCH
Confidence 348999999999 99999987653
No 169
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.08 E-value=4.9e-10 Score=97.86 Aligned_cols=99 Identities=10% Similarity=0.111 Sum_probs=77.8
Q ss_pred cc-CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---CC--CccEEE
Q 037127 194 FE-GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---IP--PADAVV 260 (307)
Q Consensus 194 ~~-~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~p--~~D~i~ 260 (307)
.. +..+|||+|||+|.++..++++.+. +++++|+ +.+++.+++ ..+|++++.+|+.+. ++ .||+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 44 6789999999999999999999776 9999999 888888876 356899999999872 32 499999
Q ss_pred echhhccC------------------ChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 261 LKWILHDW------------------NDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 261 ~~~vLh~~------------------~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
+.-..+.. .......+++.+.+.|+| ||+++++
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~ 175 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ---GGKANFV 175 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC---CcEEEEE
Confidence 96443221 112345799999999999 8999885
No 170
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.08 E-value=4.4e-10 Score=99.11 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=84.1
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHH-CCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC-
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA-FPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP- 254 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p- 254 (307)
..++..++ ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ ..+++++..+|+.+.++
T Consensus 102 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 179 (277)
T 1o54_A 102 SFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 179 (277)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence 34455555 566789999999999999999999 67899999999 888888876 12689999999988654
Q ss_pred -CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 255 -PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 255 -~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
.+|+|++ +.++. ..+|+++.++|+| ||++++..+.
T Consensus 180 ~~~D~V~~-----~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~ 215 (277)
T 1o54_A 180 KDVDALFL-----DVPDP--WNYIDKCWEALKG---GGRFATVCPT 215 (277)
T ss_dssp CSEEEEEE-----CCSCG--GGTHHHHHHHEEE---EEEEEEEESS
T ss_pred CccCEEEE-----CCcCH--HHHHHHHHHHcCC---CCEEEEEeCC
Confidence 4999987 34444 3789999999999 8999988764
No 171
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.08 E-value=4.1e-10 Score=97.06 Aligned_cols=100 Identities=16% Similarity=0.175 Sum_probs=80.0
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---C---------
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I--------- 253 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~--------- 253 (307)
..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ ..++++++.+|+.+. .
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 34577999999999999999999987 689999999 888888876 235799999998651 1
Q ss_pred --------CCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 254 --------PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 254 --------p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
..||+|++... .+....+++++.+.|+| ||++++.+..++
T Consensus 138 ~~~f~~~~~~fD~I~~~~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~ 185 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDAD-----KENYPNYYPLILKLLKP---GGLLIADNVLWD 185 (239)
T ss_dssp GTTTCCSTTCEEEEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSGG
T ss_pred cccccCCCCCcCEEEEeCC-----HHHHHHHHHHHHHHcCC---CeEEEEEccccC
Confidence 35999988743 33445889999999999 888888775554
No 172
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.07 E-value=1.2e-09 Score=93.86 Aligned_cols=97 Identities=15% Similarity=0.209 Sum_probs=77.3
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCC--CC----CccEEEec
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEA--IP----PADAVVLK 262 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~--~p----~~D~i~~~ 262 (307)
++++.+|||+|||+|.++..+++.. |+-+++++|. +.+++.+++ ...++..+.+|...+ .+ .+|++++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 6778999999999999999999874 8889999999 888888876 346799999998773 12 37887653
Q ss_pred hhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 263 WILHDWNDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 263 ~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
+++.. +...++++++++||| ||+++|..
T Consensus 155 --~~~~~--~~~~~l~~~~r~LKp---GG~lvI~i 182 (233)
T 4df3_A 155 --VAQPE--QAAIVVRNARFFLRD---GGYMLMAI 182 (233)
T ss_dssp --CCCTT--HHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred --ccCCh--hHHHHHHHHHHhccC---CCEEEEEE
Confidence 22222 235789999999999 99999864
No 173
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.07 E-value=5.9e-10 Score=90.44 Aligned_cols=99 Identities=14% Similarity=0.230 Sum_probs=79.3
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecchHHHHhchhcCCCeEEEecCCCC-C--------CC--CccEEEe
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDLPHVVNGLESDLANLKYVGGDMFE-A--------IP--PADAVVL 261 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~-~--------~p--~~D~i~~ 261 (307)
..+..+|||+|||+|.++..+++.+ |+.+++++|+.+++ . ..++++..+|+.+ + .+ .+|+|++
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~---~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~ 94 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD---P--IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMS 94 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC---C--CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccc---c--cCcEEEEEcccccchhhhhhhccCCCCceeEEEE
Confidence 3456799999999999999999995 77899999995532 1 2689999999987 3 44 4999999
Q ss_pred chhhccCChhH---------HHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 262 KWILHDWNDEE---------CVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 262 ~~vLh~~~~~~---------~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
..++|...... ...+++++.+.|+| ||++++.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~ 139 (180)
T 1ej0_A 95 DMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVKVFQG 139 (180)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEESS
T ss_pred CCCccccCCCccchHHHHHHHHHHHHHHHHHcCC---CcEEEEEEecC
Confidence 99888665431 15889999999999 89998876543
No 174
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.07 E-value=1.9e-10 Score=93.25 Aligned_cols=95 Identities=11% Similarity=0.006 Sum_probs=72.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC-------CccEEEech
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP-------PADAVVLKW 263 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p-------~~D~i~~~~ 263 (307)
...+|||+|||+|.++..+++..+. ++++|+ +.+++.+++ ..-+++++.+|+.+..+ .+|+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5678999999999999999998765 999999 888888876 11289999999876211 599999998
Q ss_pred hhccCChhHHHHHHHHHH--HhccCCCCCcEEEEEeee
Q 037127 264 ILHDWNDEECVKILKKCK--EAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 264 vLh~~~~~~~~~~L~~~~--~~L~p~~~gg~lli~e~~ 299 (307)
++| -..+ .+++.+. ++|+| ||++++....
T Consensus 119 ~~~-~~~~---~~~~~~~~~~~L~~---gG~~~~~~~~ 149 (171)
T 1ws6_A 119 PYA-MDLA---ALFGELLASGLVEA---GGLYVLQHPK 149 (171)
T ss_dssp CTT-SCTT---HHHHHHHHHTCEEE---EEEEEEEEET
T ss_pred CCc-hhHH---HHHHHHHhhcccCC---CcEEEEEeCC
Confidence 876 2222 3455555 99999 8887775543
No 175
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.06 E-value=1.3e-09 Score=90.95 Aligned_cols=103 Identities=14% Similarity=0.154 Sum_probs=77.0
Q ss_pred HHHhccccccCCCeEEEecCCchHHHHHHHHHCC--CCeEEEecchHHHHhchhcCCCeEEEecCCCCC-----------
Q 037127 186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFP--NLECTDFDLPHVVNGLESDLANLKYVGGDMFEA----------- 252 (307)
Q Consensus 186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p--~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~----------- 252 (307)
+.+.+. .+.+..+|||||||+|.++..+++.+| +.+++++|+.++ + ..++++++.+|+.+.
T Consensus 13 ~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~---~--~~~~v~~~~~d~~~~~~~~~~~~~~i 86 (201)
T 2plw_A 13 LDNKYL-FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM---D--PIPNVYFIQGEIGKDNMNNIKNINYI 86 (201)
T ss_dssp HHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC---C--CCTTCEEEECCTTTTSSCCC------
T ss_pred HHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc---C--CCCCceEEEccccchhhhhhcccccc
Confidence 344443 135567999999999999999999998 689999999552 1 245799999999873
Q ss_pred ---------------CC--CccEEEechhhccCC----hhH-----HHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 253 ---------------IP--PADAVVLKWILHDWN----DEE-----CVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 253 ---------------~p--~~D~i~~~~vLh~~~----~~~-----~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
++ .||+|++...+|... +.. ...+|+.++++|+| ||++++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~ 154 (201)
T 2plw_A 87 DNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI---GGTYIVKM 154 (201)
T ss_dssp -----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred ccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEE
Confidence 24 489999988776431 211 12489999999999 88887743
No 176
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.04 E-value=2.1e-10 Score=98.02 Aligned_cols=87 Identities=9% Similarity=0.138 Sum_probs=73.1
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC--CCC---CccEEEechhhccC
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE--AIP---PADAVVLKWILHDW 268 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~--~~p---~~D~i~~~~vLh~~ 268 (307)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++++++++|+.+ +++ .||+|++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------ 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------ 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------
Confidence 45679999999999999999998 679999999 88899888766789999999976 333 49999987
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEE
Q 037127 269 NDEECVKILKKCKEAITSNSKIGKVI 294 (307)
Q Consensus 269 ~~~~~~~~L~~~~~~L~p~~~gg~ll 294 (307)
.+ ...+|++++++|+| ||+++
T Consensus 119 ~~--~~~~l~~~~~~Lkp---gG~l~ 139 (226)
T 3m33_A 119 RG--PTSVILRLPELAAP---DAHFL 139 (226)
T ss_dssp SC--CSGGGGGHHHHEEE---EEEEE
T ss_pred CC--HHHHHHHHHHHcCC---CcEEE
Confidence 12 24789999999999 88887
No 177
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.04 E-value=3.2e-10 Score=92.91 Aligned_cols=98 Identities=10% Similarity=-0.008 Sum_probs=75.3
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---C-CCccEEEech
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I-PPADAVVLKW 263 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~-p~~D~i~~~~ 263 (307)
....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..++++++.+|+.+. . ..||+|++..
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 35679999999999999999987 6679999999 888888876 235799999998772 2 2599999886
Q ss_pred hhccCChhHHHHHHHHHH--HhccCCCCCcEEEEEeee
Q 037127 264 ILHDWNDEECVKILKKCK--EAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 264 vLh~~~~~~~~~~L~~~~--~~L~p~~~gg~lli~e~~ 299 (307)
..|. .....+++.+. ++|+| ||.+++....
T Consensus 109 ~~~~---~~~~~~~~~l~~~~~L~~---gG~l~~~~~~ 140 (177)
T 2esr_A 109 PYAK---ETIVATIEALAAKNLLSE---QVMVVCETDK 140 (177)
T ss_dssp SSHH---HHHHHHHHHHHHTTCEEE---EEEEEEEEET
T ss_pred CCCc---chHHHHHHHHHhCCCcCC---CcEEEEEECC
Confidence 6542 22345666666 88998 8888776544
No 178
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=99.04 E-value=4.8e-10 Score=97.40 Aligned_cols=98 Identities=12% Similarity=0.086 Sum_probs=79.1
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC--C-C-------CCc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE--A-I-------PPA 256 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~--~-~-------p~~ 256 (307)
.+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ ..++|+++.+|..+ + . ..|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 4567999999999999999999988 789999999 888888876 34689999999865 2 2 359
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
|+|++... ......+++.+.+.|+| ||.+++-+..+
T Consensus 158 D~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~ 193 (247)
T 1sui_A 158 DFIFVDAD-----KDNYLNYHKRLIDLVKV---GGVIGYDNTLW 193 (247)
T ss_dssp SEEEECSC-----STTHHHHHHHHHHHBCT---TCCEEEECTTG
T ss_pred EEEEEcCc-----hHHHHHHHHHHHHhCCC---CeEEEEecCCc
Confidence 99988643 22346889999999999 88888766544
No 179
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.04 E-value=5.2e-10 Score=92.13 Aligned_cols=98 Identities=11% Similarity=-0.028 Sum_probs=75.0
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC-------CCCccEEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA-------IPPADAVV 260 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~-------~p~~D~i~ 260 (307)
....+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++ ..++++++.+|+.+. ...||+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 3567999999999999999888 45679999999 888888876 236899999999772 22599999
Q ss_pred echhhccCChhHHHHHHHHH--HHhccCCCCCcEEEEEeee
Q 037127 261 LKWILHDWNDEECVKILKKC--KEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 261 ~~~vLh~~~~~~~~~~L~~~--~~~L~p~~~gg~lli~e~~ 299 (307)
+..+.|....+ ..++.+ .+.|+| ||.+++....
T Consensus 122 ~~~~~~~~~~~---~~~~~l~~~~~L~~---gG~l~~~~~~ 156 (187)
T 2fhp_A 122 LDPPYAKQEIV---SQLEKMLERQLLTN---EAVIVCETDK 156 (187)
T ss_dssp ECCCGGGCCHH---HHHHHHHHTTCEEE---EEEEEEEEET
T ss_pred ECCCCCchhHH---HHHHHHHHhcccCC---CCEEEEEeCC
Confidence 98876533333 445555 788998 8888776543
No 180
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.03 E-value=4.1e-10 Score=98.22 Aligned_cols=96 Identities=20% Similarity=0.364 Sum_probs=76.5
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC--CccEEEechhhcc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP--PADAVVLKWILHD 267 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~ 267 (307)
.+..+|||+|||+|.++..+++..+ +++++|+ |.+++.+++ ..-.+++..+|+.+.++ .||+|++....|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH-
Confidence 4567999999999999999998765 9999999 888888776 11128999999877443 599999865544
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 268 WNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
....+++++++.|+| ||++++.+...
T Consensus 196 ----~~~~~l~~~~~~Lkp---gG~lils~~~~ 221 (254)
T 2nxc_A 196 ----LHAALAPRYREALVP---GGRALLTGILK 221 (254)
T ss_dssp ----HHHHHHHHHHHHEEE---EEEEEEEEEEG
T ss_pred ----HHHHHHHHHHHHcCC---CCEEEEEeecc
Confidence 246899999999999 89998876554
No 181
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=99.02 E-value=5.9e-10 Score=95.15 Aligned_cols=100 Identities=16% Similarity=0.221 Sum_probs=80.2
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCC---C------CCc
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA---I------PPA 256 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~---~------p~~ 256 (307)
..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ ..++++++.+|+.+. . ..|
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 34567999999999999999999987 789999999 888888876 347899999998652 1 459
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
|+|++... ......+++++.+.|+| ||.+++.+..+.
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~ 183 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRP---GGILAVLRVLWR 183 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEE---EEEEEEECCSGG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEECCCcC
Confidence 99988543 33346889999999999 888888776543
No 182
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.02 E-value=7.4e-10 Score=97.89 Aligned_cols=96 Identities=11% Similarity=0.036 Sum_probs=78.4
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCC-C-CccEEEechhh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAI-P-PADAVVLKWIL 265 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~-p-~~D~i~~~~vL 265 (307)
.+..+|||+|||+|.++..+++..+. +++++|+ |.+++.+++ ..++++++++|+.+.. + .||+|++...
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p- 201 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV- 201 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC-
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc-
Confidence 45679999999999999999999876 8999999 888888876 3567999999999843 3 5999988533
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
. ....+++++.++|+| ||++++.+...
T Consensus 202 ----~-~~~~~l~~~~~~Lkp---gG~l~~~~~~~ 228 (278)
T 2frn_A 202 ----V-RTHEFIPKALSIAKD---GAIIHYHNTVP 228 (278)
T ss_dssp ----S-SGGGGHHHHHHHEEE---EEEEEEEEEEE
T ss_pred ----h-hHHHHHHHHHHHCCC---CeEEEEEEeec
Confidence 1 124789999999999 89999887764
No 183
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.02 E-value=1.3e-09 Score=95.91 Aligned_cols=104 Identities=14% Similarity=0.248 Sum_probs=82.6
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHH-CCCCeEEEecc-hHHHHhchh----c----CCCeEEEecCCCC-C
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA-FPNLECTDFDL-PHVVNGLES----D----LANLKYVGGDMFE-A 252 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~----~----~~rv~~~~~d~~~-~ 252 (307)
..++..++ .....+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ . .++++++.+|+.+ +
T Consensus 89 ~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 89 AQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 34555555 566779999999999999999986 57889999999 888888876 2 3689999999987 3
Q ss_pred CC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 253 IP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 253 ~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
.+ .+|+|++ +.++. ..+|+++.++|+| ||++++..+.
T Consensus 167 ~~~~~~D~v~~-----~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~ 205 (280)
T 1i9g_A 167 LPDGSVDRAVL-----DMLAP--WEVLDAVSRLLVA---GGVLMVYVAT 205 (280)
T ss_dssp CCTTCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEEESS
T ss_pred CCCCceeEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEEeCC
Confidence 43 4999988 23333 2789999999999 8999998764
No 184
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.01 E-value=1.2e-09 Score=93.49 Aligned_cols=95 Identities=8% Similarity=-0.013 Sum_probs=77.9
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC---CccEEEechh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP---PADAVVLKWI 264 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p---~~D~i~~~~v 264 (307)
.+..+|+|||||+|..+..+++..|..+++++|+ +..++.|++ ..++|++..+|.++..+ .+|+|++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 4567999999999999999999998889999999 888888876 46789999999998543 4999987765
Q ss_pred hccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 265 LHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
.- +-...+|....+.|++ +|++++.
T Consensus 100 Gg----~lI~~IL~~~~~~l~~---~~~lIlq 124 (230)
T 3lec_A 100 GG----RLIADILNNDIDKLQH---VKTLVLQ 124 (230)
T ss_dssp CH----HHHHHHHHHTGGGGTT---CCEEEEE
T ss_pred ch----HHHHHHHHHHHHHhCc---CCEEEEE
Confidence 43 3356888888888887 6766654
No 185
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=99.00 E-value=4e-09 Score=90.87 Aligned_cols=101 Identities=15% Similarity=0.177 Sum_probs=80.9
Q ss_pred HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCC-C--
Q 037127 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAI-P-- 254 (307)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~-p-- 254 (307)
.++..++ .....+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++..+|+.+.. +
T Consensus 82 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 157 (248)
T 2yvl_A 82 YIALKLN--LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG 157 (248)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred HHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence 3444444 556789999999999999999998 679999999 888888876 2378999999999865 4
Q ss_pred CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 255 PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 255 ~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
.+|+|++ +.++. ..+|+++.++|+| ||++++..+.
T Consensus 158 ~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~~ 192 (248)
T 2yvl_A 158 IFHAAFV-----DVREP--WHYLEKVHKSLME---GAPVGFLLPT 192 (248)
T ss_dssp CBSEEEE-----CSSCG--GGGHHHHHHHBCT---TCEEEEEESS
T ss_pred cccEEEE-----CCcCH--HHHHHHHHHHcCC---CCEEEEEeCC
Confidence 4999987 23333 3779999999999 9999988764
No 186
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=99.00 E-value=1.9e-09 Score=91.95 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=77.6
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHC-----CCCeEEEecc-hHHHHhchh-----c-----CCCeEEEecCCCCCC----
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAF-----PNLECTDFDL-PHVVNGLES-----D-----LANLKYVGGDMFEAI---- 253 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-----p~~~~~~~Dl-~~~~~~a~~-----~-----~~rv~~~~~d~~~~~---- 253 (307)
..+..+|||||||+|.++..+++.. |..+++++|. +.+++.+++ . .++++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4456799999999999999999987 5679999999 888888876 2 478999999998743
Q ss_pred C---CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 254 P---PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 254 p---~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
+ .||+|++...+|++ ++++.+.|+| ||++++.-.
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~Lkp---gG~lv~~~~ 194 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAE---NGKLIIPIE 194 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEE---EEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCC---CcEEEEEEc
Confidence 2 49999999998864 4677889999 898887654
No 187
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.00 E-value=5.3e-11 Score=103.55 Aligned_cols=99 Identities=10% Similarity=-0.000 Sum_probs=69.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCC----CCCC-----CccEE
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMF----EAIP-----PADAV 259 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~----~~~p-----~~D~i 259 (307)
+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.|++ ..++++++.+|+. ++++ .||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 467999999999999999999988899999999 888888876 3457999999953 3333 49999
Q ss_pred EechhhccCCh-------------hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 260 VLKWILHDWND-------------EECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 260 ~~~~vLh~~~~-------------~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
++.-..|.... +....++.+++++|+| ||++.+++
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkp---gG~l~~~~ 192 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE---GGELEFVK 192 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHH---HTHHHHHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEec---CCEEEEEH
Confidence 99866554331 0112456677777777 67665544
No 188
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.00 E-value=5.1e-10 Score=94.07 Aligned_cols=97 Identities=13% Similarity=0.125 Sum_probs=74.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cC--CCeEEEecCCCC--C-C--CC-ccEEEe
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DL--ANLKYVGGDMFE--A-I--PP-ADAVVL 261 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~--~rv~~~~~d~~~--~-~--p~-~D~i~~ 261 (307)
+..+|||+|||+|.++..+++... .+++++|+ +.+++.+++ .. ++++++.+|+.+ + . .. ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 456899999999999999887643 58999999 888888876 22 689999999876 2 1 25 999999
Q ss_pred chhhccCChhHHHHHHHHH--HHhccCCCCCcEEEEEeee
Q 037127 262 KWILHDWNDEECVKILKKC--KEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 262 ~~vLh~~~~~~~~~~L~~~--~~~L~p~~~gg~lli~e~~ 299 (307)
...+| .. ....+++.+ .+.|+| ||.+++....
T Consensus 132 ~~~~~-~~--~~~~~l~~~~~~~~Lkp---gG~l~i~~~~ 165 (201)
T 2ift_A 132 DPPFH-FN--LAEQAISLLCENNWLKP---NALIYVETEK 165 (201)
T ss_dssp CCCSS-SC--HHHHHHHHHHHTTCEEE---EEEEEEEEES
T ss_pred CCCCC-Cc--cHHHHHHHHHhcCccCC---CcEEEEEECC
Confidence 87755 33 345778888 557999 8888776554
No 189
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=98.99 E-value=1.4e-09 Score=93.86 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=78.1
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC---CccEEEechh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP---PADAVVLKWI 264 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p---~~D~i~~~~v 264 (307)
.+..+|+|||||+|.++..+++..|..+++++|+ +..++.|++ ..++|++..+|.++..+ .||+|++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 4567999999999999999999998889999999 888888876 46789999999998544 3999987655
Q ss_pred hccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 265 LHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
.- +-...+|....+.|++ ++++++.
T Consensus 100 Gg----~lI~~IL~~~~~~L~~---~~~lIlq 124 (244)
T 3gnl_A 100 GG----TLIRTILEEGAAKLAG---VTKLILQ 124 (244)
T ss_dssp CH----HHHHHHHHHTGGGGTT---CCEEEEE
T ss_pred ch----HHHHHHHHHHHHHhCC---CCEEEEE
Confidence 42 3356889999999987 6776665
No 190
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.99 E-value=9.7e-10 Score=94.80 Aligned_cols=97 Identities=13% Similarity=0.111 Sum_probs=77.7
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC--C-C-------CCc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE--A-I-------PPA 256 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~--~-~-------p~~ 256 (307)
.+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ ..++|+++.+|..+ + . ..|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 4567999999999999999999988 789999999 888888876 34589999999875 1 2 259
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
|+|++.. +......+++.+.+.|+| ||.+++-+..
T Consensus 149 D~I~~d~-----~~~~~~~~l~~~~~~L~p---GG~lv~d~~~ 183 (237)
T 3c3y_A 149 DFGFVDA-----DKPNYIKYHERLMKLVKV---GGIVAYDNTL 183 (237)
T ss_dssp EEEEECS-----CGGGHHHHHHHHHHHEEE---EEEEEEECTT
T ss_pred CEEEECC-----chHHHHHHHHHHHHhcCC---CeEEEEecCC
Confidence 9998753 233457899999999999 7777665543
No 191
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.98 E-value=6.9e-10 Score=98.00 Aligned_cols=98 Identities=15% Similarity=0.076 Sum_probs=77.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c--------CCCeEEEecCCCCC---CC-CccEEEe
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D--------LANLKYVGGDMFEA---IP-PADAVVL 261 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~--------~~rv~~~~~d~~~~---~p-~~D~i~~ 261 (307)
.+.+|||||||+|..+..+++..|..+++++|+ |.+++.+++ . .+|++++.+|..+. .+ .||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 467999999999999999999877789999999 889988876 2 47999999998762 22 5999998
Q ss_pred chhhccCChhH--HHHHHHHHHHhccCCCCCcEEEEE
Q 037127 262 KWILHDWNDEE--CVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 262 ~~vLh~~~~~~--~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
....+..+... ...+++.++++|+| ||.+++.
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~p---gG~lv~~ 188 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ 188 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 65544332211 24789999999999 7877765
No 192
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=98.98 E-value=6.1e-10 Score=96.23 Aligned_cols=100 Identities=15% Similarity=0.070 Sum_probs=85.6
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC--CccEEEechhhcc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP--PADAVVLKWILHD 267 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p--~~D~i~~~~vLh~ 267 (307)
..+.+|||||||.|-++..+...+|+.+++++|+ +.+++.++. ...+.++...|+..+.| .+|++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999999 888888877 46668999999998544 5999999999999
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 268 WNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
+.+++-...+ ++.++|++ +|.++-++.
T Consensus 211 Le~q~kg~g~-~ll~aL~~---~~vvVSfp~ 237 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNS---PNIVVTFPT 237 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSC---SEEEEEEEC
T ss_pred hhhhhhHHHH-HHHHHhCC---CCEEEeccc
Confidence 9887655666 89999998 666666655
No 193
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.98 E-value=8.7e-10 Score=97.72 Aligned_cols=100 Identities=12% Similarity=0.062 Sum_probs=79.8
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c--------CCCeEEEecCCCCC---CC-CccEEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D--------LANLKYVGGDMFEA---IP-PADAVV 260 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~--------~~rv~~~~~d~~~~---~p-~~D~i~ 260 (307)
..+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ . .+|++++.+|+.+. .+ .||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4567999999999999999999888889999999 888888876 1 47999999998762 23 599999
Q ss_pred echhhccCChhHH--HHHHHHHHHhccCCCCCcEEEEEe
Q 037127 261 LKWILHDWNDEEC--VKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 261 ~~~vLh~~~~~~~--~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
+....+..+.... ..++++++++|+| ||.+++..
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQC 192 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEE---EEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEEC
Confidence 8655443233222 5899999999999 88887763
No 194
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=98.98 E-value=9.5e-10 Score=93.94 Aligned_cols=93 Identities=18% Similarity=0.257 Sum_probs=76.5
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCC------CCeEEEecc-hHHHHhchh-----c-----CCCeEEEecCCCCCCC--
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFP------NLECTDFDL-PHVVNGLES-----D-----LANLKYVGGDMFEAIP-- 254 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p------~~~~~~~Dl-~~~~~~a~~-----~-----~~rv~~~~~d~~~~~p-- 254 (307)
..+..+|||||||+|.++..+++..+ ..+++++|+ +.+++.+++ . .++++++.+|..++.+
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 44567999999999999999998765 368999999 888888876 1 5689999999987543
Q ss_pred -CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 255 -PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 255 -~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
.||+|++...+|+++ +++.+.|+| ||++++.-
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~ 194 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLAS---GGRLIVPV 194 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEE---EEEEEEEE
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcC---CCEEEEEE
Confidence 499999999998765 567889999 88888753
No 195
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=98.98 E-value=2.7e-09 Score=97.53 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=83.9
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CC--
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AI-- 253 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~-- 253 (307)
..++.... +.+..+|||+|||+|.++..++... |+.+++++|+ +.+++.|++ ..++++|..+|+.+ +.
T Consensus 193 ~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 193 QALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 44444444 4567799999999999999999988 8899999999 888988876 22389999999988 32
Q ss_pred CCccEEEechhhccC-Ch-hH----HHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 254 PPADAVVLKWILHDW-ND-EE----CVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 254 p~~D~i~~~~vLh~~-~~-~~----~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
+.+|+|++.-..+.. .+ .+ -..+++.+++.|+| ||+++++..
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkp---gG~l~i~t~ 318 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPP---GGRVALLTL 318 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCT---TCEEEEEES
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCC---CcEEEEEeC
Confidence 348999986544321 11 11 25789999999998 899998764
No 196
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=98.98 E-value=3.9e-09 Score=93.34 Aligned_cols=98 Identities=18% Similarity=0.160 Sum_probs=74.4
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc--hHHHHhchh-c-----C---------CCeEEEecCCCCC---C-
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL--PHVVNGLES-D-----L---------ANLKYVGGDMFEA---I- 253 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl--~~~~~~a~~-~-----~---------~rv~~~~~d~~~~---~- 253 (307)
....+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ . . +++++...|..+. .
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQ 156 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHH
T ss_pred cCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHH
Confidence 456799999999999999888863 348999999 577777765 1 1 4788887665542 1
Q ss_pred -----CCccEEEechhhccCChhHHHHHHHHHHHhcc---CCCCCcEEEEE
Q 037127 254 -----PPADAVVLKWILHDWNDEECVKILKKCKEAIT---SNSKIGKVIII 296 (307)
Q Consensus 254 -----p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~---p~~~gg~lli~ 296 (307)
..||+|++..++|+.++ ...+++.++++|+ | ++||+++|+
T Consensus 157 ~~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p-~~gG~l~v~ 204 (281)
T 3bzb_A 157 RCTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPAN-DPTAVALVT 204 (281)
T ss_dssp HHHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTT-CTTCEEEEE
T ss_pred hhccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCC-CCCCEEEEE
Confidence 25999999999987554 4689999999999 6 237876654
No 197
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.97 E-value=8.1e-10 Score=99.33 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=74.8
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c--------CCCeEEEecCCCCC---CC-CccEEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D--------LANLKYVGGDMFEA---IP-PADAVV 260 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~--------~~rv~~~~~d~~~~---~p-~~D~i~ 260 (307)
..+.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ . .+|++++.+|+.+. .+ .||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 3467999999999999999999888889999999 888988876 1 46899999998762 22 599999
Q ss_pred echhhccCChhHH--HHHHHHHHHhccCCCCCcEEEEEe
Q 037127 261 LKWILHDWNDEEC--VKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 261 ~~~vLh~~~~~~~--~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
+...-|.-+.... ..++++++++|+| ||.+++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~Lkp---gG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKE---DGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEE---EEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCC---CeEEEEEC
Confidence 8654332222221 5899999999999 78777653
No 198
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.96 E-value=7.3e-10 Score=95.23 Aligned_cols=99 Identities=14% Similarity=0.199 Sum_probs=79.2
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC---CC------CCcc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE---AI------PPAD 257 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~---~~------p~~D 257 (307)
.+..+|||||||+|..+..+++..| +.+++++|. +.+++.+++ ..++|+++.+|+.+ .. ..||
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 3567999999999999999999987 689999999 788888775 34689999999754 11 4599
Q ss_pred EEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 258 AVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 258 ~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
+|++... ......+++++.+.|+| ||.+++.+..+.
T Consensus 151 ~V~~d~~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~~ 186 (232)
T 3cbg_A 151 LIFIDAD-----KRNYPRYYEIGLNLLRR---GGLMVIDNVLWH 186 (232)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTEEE---EEEEEEECTTGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEeCCCcC
Confidence 9987644 23446889999999999 888888766654
No 199
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=98.96 E-value=5.6e-09 Score=89.66 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=71.4
Q ss_pred ccCCCeEEEecCCchHHHHHHHHH-CCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCCC-----CC-CccEEEec
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKA-FPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFEA-----IP-PADAVVLK 262 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~~-----~p-~~D~i~~~ 262 (307)
+.+..+|||+|||+|.++..+++. .|+-+++++|+ +.+++.+.+ ...++.++.+|+..+ .+ .+|+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 566789999999999999999986 46789999999 655433221 346899999999863 12 49999876
Q ss_pred hhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 263 WILHDWNDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 263 ~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
... ++ ....+++.+++.|+| ||++++.-
T Consensus 154 ~a~---~~-~~~il~~~~~~~Lkp---GG~lvisi 181 (232)
T 3id6_C 154 IAQ---PD-QTDIAIYNAKFFLKV---NGDMLLVI 181 (232)
T ss_dssp CCC---TT-HHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCC---hh-HHHHHHHHHHHhCCC---CeEEEEEE
Confidence 443 33 223445666679999 99999873
No 200
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=98.96 E-value=5.5e-10 Score=102.56 Aligned_cols=95 Identities=18% Similarity=0.176 Sum_probs=74.5
Q ss_pred cCCCeEEEecCC------chHHHHHHHHH-CCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CC--------CCcc
Q 037127 195 EGLNSLVDVGGA------TGTVAKAIAKA-FPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AI--------PPAD 257 (307)
Q Consensus 195 ~~~~~vlDvGgG------~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~--------p~~D 257 (307)
.+..+||||||| +|..+..+++. +|+.+++++|+ +.+. . ..++|+|+++|+.+ ++ ..||
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~-~~~rI~fv~GDa~dlpf~~~l~~~d~sFD 290 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---V-DELRIRTIQGDQNDAEFLDRIARRYGPFD 290 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---G-CBTTEEEEECCTTCHHHHHHHHHHHCCEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---h-cCCCcEEEEecccccchhhhhhcccCCcc
Confidence 456899999999 67677777665 69999999999 5542 2 45799999999987 32 3599
Q ss_pred EEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 258 AVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 258 ~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
+|++. ..|++.+ ..+.|++++++||| ||+++|.|..
T Consensus 291 lVisd-gsH~~~d--~~~aL~el~rvLKP---GGvlVi~Dl~ 326 (419)
T 3sso_A 291 IVIDD-GSHINAH--VRTSFAALFPHVRP---GGLYVIEDMW 326 (419)
T ss_dssp EEEEC-SCCCHHH--HHHHHHHHGGGEEE---EEEEEEECGG
T ss_pred EEEEC-Ccccchh--HHHHHHHHHHhcCC---CeEEEEEecc
Confidence 99876 4565543 46899999999999 8988888776
No 201
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.95 E-value=1e-09 Score=98.76 Aligned_cols=100 Identities=14% Similarity=0.062 Sum_probs=79.9
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c---------CCCeEEEecCCCCC---CC-CccEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D---------LANLKYVGGDMFEA---IP-PADAV 259 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~---------~~rv~~~~~d~~~~---~p-~~D~i 259 (307)
..+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ . .+|++++.+|+.+. .+ .||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 3567999999999999999999888889999999 888888876 1 47999999998762 22 59999
Q ss_pred Eechhhcc---CChhH--HHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 260 VLKWILHD---WNDEE--CVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 260 ~~~~vLh~---~~~~~--~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
++....|. -+... ...++++++++|+| ||.+++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCC---CcEEEEEc
Confidence 99876654 11111 25889999999999 88888764
No 202
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=98.95 E-value=3.6e-09 Score=90.12 Aligned_cols=94 Identities=16% Similarity=0.160 Sum_probs=76.3
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh---c-------CCCeEEEecCCCCCC---CCccE
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES---D-------LANLKYVGGDMFEAI---PPADA 258 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~---~-------~~rv~~~~~d~~~~~---p~~D~ 258 (307)
..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.+++ . .++++++.+|+.... ..||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 3456799999999999999999885 6679999999 888888775 1 468999999987632 25999
Q ss_pred EEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 259 VVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 259 i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
|++...++.+. +++++.|+| ||++++...
T Consensus 155 i~~~~~~~~~~--------~~~~~~Lkp---gG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKP---GGRLILPVG 183 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEE---EEEEEEEES
T ss_pred EEECCchHHHH--------HHHHHhcCC---CcEEEEEEe
Confidence 99998887654 577899999 898888653
No 203
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.95 E-value=1.1e-09 Score=98.92 Aligned_cols=99 Identities=12% Similarity=0.095 Sum_probs=77.4
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---c------CCCeEEEecCCCCC---CC-CccEEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---D------LANLKYVGGDMFEA---IP-PADAVV 260 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~------~~rv~~~~~d~~~~---~p-~~D~i~ 260 (307)
..+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ . .+|++++.+|+.+. .+ .||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3467999999999999999999878889999999 888988876 1 46899999998762 23 599999
Q ss_pred echhhccCChhHH--HHHHHHHHHhccCCCCCcEEEEE
Q 037127 261 LKWILHDWNDEEC--VKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 261 ~~~vLh~~~~~~~--~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
+...-+.-+.... ..++++++++|+| ||.+++.
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 229 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 229 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 8653221122211 5899999999999 7877775
No 204
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.95 E-value=9.8e-10 Score=97.28 Aligned_cols=98 Identities=13% Similarity=0.096 Sum_probs=75.8
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c--------------CCCeEEEecCCCCC---CCC
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D--------------LANLKYVGGDMFEA---IPP 255 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~--------------~~rv~~~~~d~~~~---~p~ 255 (307)
..+.+|||||||+|..+..+++. |..+++++|+ +.+++.+++ . .+|++++.+|..+. ...
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 34679999999999999999998 8889999999 888888775 2 36899999998652 225
Q ss_pred ccEEEechhhccCChhH--HHHHHHHHHHhccCCCCCcEEEEE
Q 037127 256 ADAVVLKWILHDWNDEE--CVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 256 ~D~i~~~~vLh~~~~~~--~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
||+|++....+..+.+. ...++++++++|+| ||.+++.
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~ 192 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN---PGIYVTQ 192 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEE---EEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 99999876544222222 25789999999999 7877775
No 205
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.94 E-value=1.2e-09 Score=99.07 Aligned_cols=99 Identities=17% Similarity=0.127 Sum_probs=77.8
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c--------CCCeEEEecCCCC---CCC--CccEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D--------LANLKYVGGDMFE---AIP--PADAV 259 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~--------~~rv~~~~~d~~~---~~p--~~D~i 259 (307)
..+.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ . .+|++++.+|+.+ ..+ .||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999888889999999 888888876 1 4699999999865 233 59999
Q ss_pred EechhhccCChhH--HHHHHHHHHHhccCCCCCcEEEEE
Q 037127 260 VLKWILHDWNDEE--CVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 260 ~~~~vLh~~~~~~--~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
++....+..+.+. ...+++.++++|+| ||.+++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRP---GGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 9854422111111 36899999999999 8888775
No 206
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.94 E-value=1.5e-09 Score=95.57 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=81.8
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC-CC-CccEEEechhh
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA-IP-PADAVVLKWIL 265 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~-~p-~~D~i~~~~vL 265 (307)
+.+..+|||+|||+|.++..+++..+..+++++|+ +.+++.+++ ..++++++.+|+.+. .+ .+|+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45667999999999999999999988889999999 888888876 235789999999874 22 49999887543
Q ss_pred ccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 266 HDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 266 h~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
....+++.+.+.|+| ||.+++......+
T Consensus 197 ------~~~~~l~~~~~~Lkp---gG~l~~s~~~~~~ 224 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKD---RGVIHYHETVAEK 224 (272)
T ss_dssp ------SGGGGHHHHHHHEEE---EEEEEEEEEEEGG
T ss_pred ------cHHHHHHHHHHHcCC---CCEEEEEEcCccc
Confidence 234789999999999 8999888776543
No 207
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.94 E-value=7.2e-10 Score=107.63 Aligned_cols=104 Identities=13% Similarity=0.194 Sum_probs=82.7
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC---CC-C-CccEEEec
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE---AI-P-PADAVVLK 262 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~---~~-p-~~D~i~~~ 262 (307)
+.++.+|||||||.|.++..+++. +.+++|+|+ +.+++.|+. ..-.|+|.++++.+ +. + .||+|++.
T Consensus 64 ~~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~ 141 (569)
T 4azs_A 64 LGRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGL 141 (569)
T ss_dssp HTSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred cCCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEEC
Confidence 345679999999999999999998 789999999 888888876 22469999999865 23 2 59999999
Q ss_pred hhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 263 WILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 263 ~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
.+|||.++++...-+.++.+.+++ +++.+++..+..+
T Consensus 142 e~~ehv~~~~~~~~~~~~~~tl~~---~~~~~~~~~~~~e 178 (569)
T 4azs_A 142 SVFHHIVHLHGIDEVKRLLSRLAD---VTQAVILELAVKE 178 (569)
T ss_dssp SCHHHHHHHHCHHHHHHHHHHHHH---HSSEEEEECCCTT
T ss_pred cchhcCCCHHHHHHHHHHHHHhcc---ccceeeEEecccc
Confidence 999999987756666677777877 6777776655443
No 208
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.93 E-value=9.9e-10 Score=98.37 Aligned_cols=100 Identities=16% Similarity=0.118 Sum_probs=76.3
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---c------CCCeEEEecCCCC--C-CC-CccEEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---D------LANLKYVGGDMFE--A-IP-PADAVV 260 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~------~~rv~~~~~d~~~--~-~p-~~D~i~ 260 (307)
..+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ . .+|++++.+|..+ + .+ .||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999888889999999 888888876 1 5799999999865 2 22 599999
Q ss_pred echhhccCChh--HHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 261 LKWILHDWNDE--ECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 261 ~~~vLh~~~~~--~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
+....+..+.. ....++++++++|+| ||.+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKE---DGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEE---EEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCC---CeEEEEec
Confidence 86554422221 124789999999999 78777654
No 209
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=98.93 E-value=2.4e-09 Score=89.26 Aligned_cols=104 Identities=13% Similarity=0.309 Sum_probs=75.2
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEecCCCCCC----------
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAI---------- 253 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~~---------- 253 (307)
.++.+.+. .+.+..+|||+|||+|.++..++++ ..+++++|+.++ . ..++++++.+|+.+..
T Consensus 14 ~ei~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~-~~~~v~~~~~D~~~~~~~~~~~~~~~ 85 (191)
T 3dou_A 14 EFLLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----E-EIAGVRFIRCDIFKETIFDDIDRALR 85 (191)
T ss_dssp HHHHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----C-CCTTCEEEECCTTSSSHHHHHHHHHH
T ss_pred HHHHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----c-cCCCeEEEEccccCHHHHHHHHHHhh
Confidence 34555554 2456789999999999999999998 779999999542 1 3468999999998732
Q ss_pred ----CCccEEEechhhcc---C------ChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 254 ----PPADAVVLKWILHD---W------NDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 254 ----p~~D~i~~~~vLh~---~------~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
..+|+|++...... + ..+.+..+|+.+.++|+| ||++++...
T Consensus 86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lkp---GG~lv~k~~ 140 (191)
T 3dou_A 86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRN---GGNVLLKQF 140 (191)
T ss_dssp HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEEc
Confidence 36999988542211 1 112245789999999999 888886543
No 210
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=98.93 E-value=2.8e-09 Score=89.52 Aligned_cols=97 Identities=10% Similarity=0.102 Sum_probs=74.0
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC--CCC--CccEEEechhh
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE--AIP--PADAVVLKWIL 265 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~--~~p--~~D~i~~~~vL 265 (307)
...+|||+|||+|.++..++++.. .+++++|+ +.+++.+++ ..++++++.+|+.+ +.+ .||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 456899999999999999887753 48999999 888888876 22689999999876 322 49999988775
Q ss_pred ccCChhHHHHHHHHHHHh--ccCCCCCcEEEEEeee
Q 037127 266 HDWNDEECVKILKKCKEA--ITSNSKIGKVIIIDMM 299 (307)
Q Consensus 266 h~~~~~~~~~~L~~~~~~--L~p~~~gg~lli~e~~ 299 (307)
| +.. ...+++.+.+. |+| ||.+++....
T Consensus 133 ~-~~~--~~~~l~~l~~~~~L~p---gG~l~i~~~~ 162 (202)
T 2fpo_A 133 R-RGL--LEETINLLEDNGWLAD---EALIYVESEV 162 (202)
T ss_dssp S-TTT--HHHHHHHHHHTTCEEE---EEEEEEEEEG
T ss_pred C-CCc--HHHHHHHHHhcCccCC---CcEEEEEECC
Confidence 5 332 34677777664 998 7887765543
No 211
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=98.92 E-value=3.6e-09 Score=95.90 Aligned_cols=104 Identities=14% Similarity=0.179 Sum_probs=79.8
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHH-CCCCeEEEecc-hHHHHhchh--c--------------CCCeEEE
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA-FPNLECTDFDL-PHVVNGLES--D--------------LANLKYV 245 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl-~~~~~~a~~--~--------------~~rv~~~ 245 (307)
..++..++ ..+..+|||+|||+|.++..+++. .|+.+++++|+ +.+++.|++ . .++++++
T Consensus 95 ~~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~ 172 (336)
T 2b25_A 95 NMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 172 (336)
T ss_dssp HHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence 33444444 566789999999999999999998 57789999999 888888876 1 2689999
Q ss_pred ecCCCCC---CC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 246 GGDMFEA---IP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 246 ~~d~~~~---~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
.+|+.+. ++ .||+|++.. ++. ..++++++++|+| ||++++....
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~~-----~~~--~~~l~~~~~~Lkp---gG~lv~~~~~ 221 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALDM-----LNP--HVTLPVFYPHLKH---GGVCAVYVVN 221 (336)
T ss_dssp ESCTTCCC-------EEEEEECS-----SST--TTTHHHHGGGEEE---EEEEEEEESS
T ss_pred ECChHHcccccCCCCeeEEEECC-----CCH--HHHHHHHHHhcCC---CcEEEEEeCC
Confidence 9999873 33 399998843 222 1378999999999 8999987653
No 212
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=98.91 E-value=5.3e-09 Score=94.08 Aligned_cols=103 Identities=14% Similarity=0.181 Sum_probs=78.8
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-C-CC-CccEEEec-
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A-IP-PADAVVLK- 262 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~-~p-~~D~i~~~- 262 (307)
.....+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ...+++++.+|+.+ + .+ .||+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 45667999999999999999999875 479999999 778887776 34579999999987 2 23 59999983
Q ss_pred -----hhhcc-------CChhHH-------HHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 263 -----WILHD-------WNDEEC-------VKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 263 -----~vLh~-------~~~~~~-------~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
.+++. |+.++. .++|+++.+.|+| ||++++....
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp---GG~lv~stcs 248 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCS 248 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEeCC
Confidence 23332 333321 5899999999999 8988886543
No 213
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=98.91 E-value=2.5e-09 Score=93.80 Aligned_cols=98 Identities=15% Similarity=0.080 Sum_probs=71.1
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh-cCC------CeEEE--ecCCCC-CCCCccEEEech
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES-DLA------NLKYV--GGDMFE-AIPPADAVVLKW 263 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~-~~~------rv~~~--~~d~~~-~~p~~D~i~~~~ 263 (307)
+.+..+|||||||+|.++..+++. .+++++|+.+++..+++ ... ++.|+ .+|+.+ +...||+|++..
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 456789999999999999999987 58999999555433322 111 68999 999987 322599999987
Q ss_pred hhccCChh----H-HHHHHHHHHHhccCCCCCc--EEEEEee
Q 037127 264 ILHDWNDE----E-CVKILKKCKEAITSNSKIG--KVIIIDM 298 (307)
Q Consensus 264 vLh~~~~~----~-~~~~L~~~~~~L~p~~~gg--~lli~e~ 298 (307)
. +..+.. . ...+|+.+.++|+| || .+++-..
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~fv~kv~ 186 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVK---NPSADFVVKVL 186 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCEEEEEES
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhcc---CCCeEEEEEeC
Confidence 6 433221 1 22488999999999 89 7777443
No 214
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.91 E-value=3.7e-09 Score=97.02 Aligned_cols=95 Identities=16% Similarity=0.192 Sum_probs=72.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh------cCCCeEEEecCCCC-CCC-CccEEEechhhcc
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES------DLANLKYVGGDMFE-AIP-PADAVVLKWILHD 267 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~------~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~ 267 (307)
+.++|||||||+|.++...++.. ..+++++|..++++.|++ ..++|+++.+|+.+ +.| .+|+|++-+.-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 46789999999999988777753 358999999767777765 57899999999988 567 5999987544433
Q ss_pred CCh-hHHHHHHHHHHHhccCCCCCcEEE
Q 037127 268 WND-EECVKILKKCKEAITSNSKIGKVI 294 (307)
Q Consensus 268 ~~~-~~~~~~L~~~~~~L~p~~~gg~ll 294 (307)
... .....++....+.|+| ||.++
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp---~G~~i 186 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKE---GGLLL 186 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEE---EEEEE
T ss_pred ccccchhhhHHHHHHhhCCC---CceEC
Confidence 222 2356788888899999 77765
No 215
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.91 E-value=1.9e-09 Score=95.70 Aligned_cols=91 Identities=20% Similarity=0.324 Sum_probs=68.7
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c-----CCCeEEEecCCCC-CCC
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D-----LANLKYVGGDMFE-AIP 254 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~-----~~rv~~~~~d~~~-~~p 254 (307)
.+.+++.+. .....+|||||||+|.++..+++.. .+++++|+ +.+++.+++ . .++++++.+|+.+ +.+
T Consensus 17 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~ 92 (285)
T 1zq9_A 17 INSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP 92 (285)
T ss_dssp HHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred HHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence 345555555 5567799999999999999999984 58999999 888888876 1 2589999999998 677
Q ss_pred CccEEEechhhccCChhHHHHHHH
Q 037127 255 PADAVVLKWILHDWNDEECVKILK 278 (307)
Q Consensus 255 ~~D~i~~~~vLh~~~~~~~~~~L~ 278 (307)
.+|+|+++ .-++|..+....+|.
T Consensus 93 ~fD~vv~n-lpy~~~~~~~~~~l~ 115 (285)
T 1zq9_A 93 FFDTCVAN-LPYQISSPFVFKLLL 115 (285)
T ss_dssp CCSEEEEE-CCGGGHHHHHHHHHH
T ss_pred hhcEEEEe-cCcccchHHHHHHHh
Confidence 89988874 334465554445553
No 216
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=98.90 E-value=3.8e-09 Score=87.69 Aligned_cols=97 Identities=16% Similarity=0.286 Sum_probs=73.4
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCC---------CeEEEecchHHHHhchhcCCCeEEE-ecCCCCC---------CC
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPN---------LECTDFDLPHVVNGLESDLANLKYV-GGDMFEA---------IP 254 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~---------~~~~~~Dl~~~~~~a~~~~~rv~~~-~~d~~~~---------~p 254 (307)
+.+..+|||||||+|.++..+++.++. .+++++|+.++. ...+++++ .+|+.+. .+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~ 94 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----PLEGATFLCPADVTDPRTSQRILEVLP 94 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----CCTTCEEECSCCTTSHHHHHHHHHHSG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----cCCCCeEEEeccCCCHHHHHHHHHhcC
Confidence 455789999999999999999999875 799999995521 23578999 9998762 22
Q ss_pred --CccEEEechhhcc---C-ChhH-----HHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 255 --PADAVVLKWILHD---W-NDEE-----CVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 255 --~~D~i~~~~vLh~---~-~~~~-----~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.||+|++...+|. | .+.. ...+|+++.++|+| ||++++...
T Consensus 95 ~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~ 146 (196)
T 2nyu_A 95 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP---GGTFLCKTW 146 (196)
T ss_dssp GGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred CCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcC---CCEEEEEec
Confidence 5999998655442 1 2211 14789999999999 899888754
No 217
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=98.90 E-value=2.3e-09 Score=94.61 Aligned_cols=97 Identities=13% Similarity=0.019 Sum_probs=70.7
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh-cCC------CeEEE--ecCCCC-CCCCccEEEech
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES-DLA------NLKYV--GGDMFE-AIPPADAVVLKW 263 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~-~~~------rv~~~--~~d~~~-~~p~~D~i~~~~ 263 (307)
+.+..+|||||||+|.++..+++. .+++++|+.+++..+++ ... +++|+ .+|+.+ +...||+|++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 456789999999999999999987 58999999555433322 111 78999 999887 322599999987
Q ss_pred hhccCChh----H-HHHHHHHHHHhccCCCCCc--EEEEEe
Q 037127 264 ILHDWNDE----E-CVKILKKCKEAITSNSKIG--KVIIID 297 (307)
Q Consensus 264 vLh~~~~~----~-~~~~L~~~~~~L~p~~~gg--~lli~e 297 (307)
. +..+.. . ...+|+.+.++|+| || .+++..
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~~v~~~ 193 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEY---NQGCGFCVKV 193 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---STTCEEEEEE
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhcc---CCCcEEEEEe
Confidence 6 433221 1 22478999999999 89 777743
No 218
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.90 E-value=1.4e-09 Score=96.94 Aligned_cols=98 Identities=11% Similarity=0.076 Sum_probs=74.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c--------CCCeEEEecCCCCC---CC-CccEEEe
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D--------LANLKYVGGDMFEA---IP-PADAVVL 261 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~--------~~rv~~~~~d~~~~---~p-~~D~i~~ 261 (307)
.+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ . .+|++++.+|+.+. .+ .||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 457999999999999999999888889999999 888888876 2 47999999998652 22 4999997
Q ss_pred chhhccCCh-h--HHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 262 KWILHDWND-E--ECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 262 ~~vLh~~~~-~--~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
.-.-+.... . ....++++++++|+| ||.+++.
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 204 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE 204 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 533220111 0 125889999999999 7877775
No 219
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=98.88 E-value=5.5e-09 Score=89.41 Aligned_cols=96 Identities=8% Similarity=0.045 Sum_probs=79.3
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-CCC-CccEEEechhhcc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-AIP-PADAVVLKWILHD 267 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~ 267 (307)
..+.+|||||||.|-++..+. |..+++++|+ +.+++.+++ ...+.++...|... +.| .+|++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 557899999999999999887 8999999999 888998887 46788999999998 444 4999999999999
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 268 WNDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
..+++-...+ ++.++|++ ++.++-++
T Consensus 181 LE~q~~~~~~-~ll~aL~~---~~vvVsfP 206 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNT---PRMAVSFP 206 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBC---SEEEEEEE
T ss_pred hhhhchhhHH-HHHHHhcC---CCEEEEcC
Confidence 8776644555 88899998 55555554
No 220
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.87 E-value=7.1e-09 Score=86.56 Aligned_cols=89 Identities=17% Similarity=0.192 Sum_probs=68.1
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCCCccEEEechhhccCChhHH
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIPPADAVVLKWILHDWNDEEC 273 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~~~~~~~ 273 (307)
....+|||+|||+|.++..+++. +..+++++|+ +.+++.+++...+++++.+|+.+-...+|+|++..++|.+++...
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~~~ 128 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSD 128 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC-------C
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCeeEEEECCCchhccCchh
Confidence 35679999999999999999987 5557999999 889998887333899999999872236999999999998876544
Q ss_pred HHHHHHHHHhc
Q 037127 274 VKILKKCKEAI 284 (307)
Q Consensus 274 ~~~L~~~~~~L 284 (307)
..+++++.+.+
T Consensus 129 ~~~l~~~~~~~ 139 (200)
T 1ne2_A 129 RAFIDKAFETS 139 (200)
T ss_dssp HHHHHHHHHHE
T ss_pred HHHHHHHHHhc
Confidence 57888888876
No 221
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=98.86 E-value=1.3e-10 Score=100.03 Aligned_cols=90 Identities=14% Similarity=0.102 Sum_probs=69.8
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----c--CCCeEEEecCCCCCCC--CccEEEechhhc
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----D--LANLKYVGGDMFEAIP--PADAVVLKWILH 266 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~--~~rv~~~~~d~~~~~p--~~D~i~~~~vLh 266 (307)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ . .++++++.+|+.+..+ .||+|++..++|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 56799999999999999999974 79999999 888888876 1 2689999999987323 599999998888
Q ss_pred cCChhHHHHHHHHHHHhccCCCCCcE
Q 037127 267 DWNDEECVKILKKCKEAITSNSKIGK 292 (307)
Q Consensus 267 ~~~~~~~~~~L~~~~~~L~p~~~gg~ 292 (307)
..++.. ..+.+++++|+| ||.
T Consensus 156 ~~~~~~--~~~~~~~~~L~p---gG~ 176 (241)
T 3gdh_A 156 GPDYAT--AETFDIRTMMSP---DGF 176 (241)
T ss_dssp SGGGGG--SSSBCTTTSCSS---CHH
T ss_pred Ccchhh--hHHHHHHhhcCC---cce
Confidence 665542 244455566665 555
No 222
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=98.86 E-value=6.6e-09 Score=91.53 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=77.5
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-C------CCCccEE
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A------IPPADAV 259 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~------~p~~D~i 259 (307)
.....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ...+++++.+|+.+ + ...||+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 455679999999999999999998877 79999999 777887765 23589999999876 2 2259999
Q ss_pred Eec------hhhcc---CChh-------HHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 260 VLK------WILHD---WNDE-------ECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 260 ~~~------~vLh~---~~~~-------~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
++. .+++. |+.+ ...++|+++.+.|+| ||++++.....
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~stcs~ 214 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK---DGELVYSTCSM 214 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCC
Confidence 986 23321 2221 126899999999999 88888766544
No 223
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=98.85 E-value=5.4e-09 Score=92.57 Aligned_cols=102 Identities=9% Similarity=0.035 Sum_probs=74.0
Q ss_pred HHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEe-cCCCC----CCC--Cc
Q 037127 185 VVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVG-GDMFE----AIP--PA 256 (307)
Q Consensus 185 ~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~-~d~~~----~~p--~~ 256 (307)
.++..+. ......+|||||||+|.++..+++. +..+++++|+ +.|++.+.+..+|+.... .|+.. .+| .+
T Consensus 75 ~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~f 152 (291)
T 3hp7_A 75 KALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLP 152 (291)
T ss_dssp HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCC
T ss_pred HHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCC
Confidence 3455554 1234579999999999999999886 4568999999 777766433455665443 34432 234 38
Q ss_pred cEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 257 DAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
|++++..++|.+ ..+|.+++++|+| ||+++++
T Consensus 153 D~v~~d~sf~sl-----~~vL~e~~rvLkp---GG~lv~l 184 (291)
T 3hp7_A 153 SFASIDVSFISL-----NLILPALAKILVD---GGQVVAL 184 (291)
T ss_dssp SEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEE
T ss_pred CEEEEEeeHhhH-----HHHHHHHHHHcCc---CCEEEEE
Confidence 999998887754 4789999999999 9999886
No 224
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=98.84 E-value=3.5e-09 Score=94.81 Aligned_cols=96 Identities=10% Similarity=0.103 Sum_probs=69.1
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-----hHHHHhchh-c--CCCeEEEec-CCCC-CCCCccEEEech
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-----PHVVNGLES-D--LANLKYVGG-DMFE-AIPPADAVVLKW 263 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-----~~~~~~a~~-~--~~rv~~~~~-d~~~-~~p~~D~i~~~~ 263 (307)
+.+..+|||||||+|.++..++++ .+++++|+ +..++.+.. . .++|+|+.+ |+.+ +...||+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 455689999999999999999987 37899998 433322221 1 267999999 9987 333699999976
Q ss_pred hhc---cCChhH-HHHHHHHHHHhccCCCCCcEEEE
Q 037127 264 ILH---DWNDEE-CVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 264 vLh---~~~~~~-~~~~L~~~~~~L~p~~~gg~lli 295 (307)
..+ ...+.. ...+|+.++++|+| ||.+++
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~Lkp---GG~~v~ 189 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCV 189 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCC---CCEEEE
Confidence 653 222222 22688999999999 887766
No 225
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.83 E-value=7.1e-09 Score=90.78 Aligned_cols=90 Identities=13% Similarity=0.054 Sum_probs=74.3
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c--------CCCeEEEecCCCCCCCCccEEEechh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D--------LANLKYVGGDMFEAIPPADAVVLKWI 264 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~--------~~rv~~~~~d~~~~~p~~D~i~~~~v 264 (307)
..+.+|||||||+|..+..+++. + .+++++|+ +.+++.|++ . .+|++++.+|..+-...||+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d-- 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL-- 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence 34679999999999999999998 7 89999999 889998876 1 468999999988733459999986
Q ss_pred hccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 265 LHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
.+++. .+++.++++|+| ||.+++.
T Consensus 147 ---~~dp~--~~~~~~~~~L~p---gG~lv~~ 170 (262)
T 2cmg_A 147 ---QEPDI--HRIDGLKRMLKE---DGVFISV 170 (262)
T ss_dssp ---SCCCH--HHHHHHHTTEEE---EEEEEEE
T ss_pred ---CCChH--HHHHHHHHhcCC---CcEEEEE
Confidence 23432 489999999999 8888775
No 226
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=98.82 E-value=4.4e-09 Score=86.02 Aligned_cols=87 Identities=8% Similarity=0.038 Sum_probs=71.8
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCC-CC---C--CccEEEechhh
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFE-AI---P--PADAVVLKWIL 265 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~-~~---p--~~D~i~~~~vL 265 (307)
.....+|||||||. +.+|. +.+++.+++ ...+++++.+|+.+ +. + .||+|++..++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56678999999996 23888 889998887 44569999999987 33 4 49999999999
Q ss_pred ccC-ChhHHHHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 266 HDW-NDEECVKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 266 h~~-~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
|++ ++. ..+|++++++||| ||++++.++...
T Consensus 74 ~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~ 105 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRP---GGCLFLKEPVET 105 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEE---EEEEEEEEEEES
T ss_pred hhcccCH--HHHHHHHHHHCCC---CEEEEEEccccc
Confidence 998 665 5899999999999 999999777654
No 227
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=98.79 E-value=2.8e-08 Score=93.70 Aligned_cols=105 Identities=18% Similarity=0.195 Sum_probs=81.6
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC---CC--CccEEEe
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA---IP--PADAVVL 261 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~---~p--~~D~i~~ 261 (307)
.....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ...+++++.+|+.+. ++ .||+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 455679999999999999999999887 79999999 777777765 345799999999872 33 4999996
Q ss_pred ------chhhccCCh-------hHH-------HHHHHHHHHhccCCCCCcEEEEEeeecC
Q 037127 262 ------KWILHDWND-------EEC-------VKILKKCKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 262 ------~~vLh~~~~-------~~~-------~~~L~~~~~~L~p~~~gg~lli~e~~~~ 301 (307)
..+++..++ ++. ..+|+++.+.|+| ||++++.+....
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvy~tcs~~ 393 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKP---GGRLLYTTCSIF 393 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence 335554333 211 5789999999999 899988776543
No 228
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=98.79 E-value=1.4e-08 Score=87.38 Aligned_cols=99 Identities=11% Similarity=0.083 Sum_probs=65.6
Q ss_pred HHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEE--------e-cCCCCCCCC
Q 037127 186 VIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYV--------G-GDMFEAIPP 255 (307)
Q Consensus 186 ~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~--------~-~d~~~~~p~ 255 (307)
++..+. ......+|||||||+|.++..+++. +..+++++|+ +.+++.+.+...++... . .|+..+.
T Consensus 28 ~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 103 (232)
T 3opn_A 28 ALKEFH-LEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGR-- 103 (232)
T ss_dssp HHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCC--
T ss_pred HHHHcC-CCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCC--
Confidence 444444 1234569999999999999999988 3349999999 77777765433444332 2 2222211
Q ss_pred ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
+|.+.+..++..+ ..+|++++++|+| ||+++++
T Consensus 104 ~d~~~~D~v~~~l-----~~~l~~i~rvLkp---gG~lv~~ 136 (232)
T 3opn_A 104 PSFTSIDVSFISL-----DLILPPLYEILEK---NGEVAAL 136 (232)
T ss_dssp CSEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEE
T ss_pred CCEEEEEEEhhhH-----HHHHHHHHHhccC---CCEEEEE
Confidence 3444444444333 4789999999999 9999885
No 229
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.78 E-value=1.1e-08 Score=93.05 Aligned_cols=100 Identities=11% Similarity=0.145 Sum_probs=80.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCC-----CeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCC--CccEEEech
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPN-----LECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIP--PADAVVLKW 263 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~-----~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p--~~D~i~~~~ 263 (307)
...+|||+|||+|.++..+++..+. .+++++|+ +.+++.|+. ..-++.+..+|.+.+.+ .+|+|++.-
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL 209 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence 4578999999999999999988764 68999999 788888775 23378999999998544 599999988
Q ss_pred hhccCChhHH----------------HHHHHHHHHhccCCCCCcEEEEEee
Q 037127 264 ILHDWNDEEC----------------VKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 264 vLh~~~~~~~----------------~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.++.++.++. ..+++++.+.|+| ||+++++-+
T Consensus 210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~---gG~~~~v~p 257 (344)
T 2f8l_A 210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLVP 257 (344)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence 8766655432 2689999999998 898887763
No 230
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.75 E-value=1.6e-08 Score=90.27 Aligned_cols=89 Identities=15% Similarity=0.279 Sum_probs=64.7
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-CCCCc
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-AIPPA 256 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~p~~ 256 (307)
+.+++.+. .....+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..++++++.+|+.+ +.+.+
T Consensus 32 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 32 DKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 44455444 456779999999999999999987 468999999 888888776 23689999999988 55679
Q ss_pred cEEEechhhccCChhHHHHHH
Q 037127 257 DAVVLKWILHDWNDEECVKIL 277 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L 277 (307)
|+|++.- -++|..+....+|
T Consensus 108 D~Vv~n~-py~~~~~~~~~ll 127 (299)
T 2h1r_A 108 DVCTANI-PYKISSPLIFKLI 127 (299)
T ss_dssp SEEEEEC-CGGGHHHHHHHHH
T ss_pred CEEEEcC-CcccccHHHHHHH
Confidence 9988754 4457766666666
No 231
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.72 E-value=2.4e-08 Score=87.94 Aligned_cols=99 Identities=12% Similarity=0.054 Sum_probs=77.8
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCC--CccEEEechh
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIP--PADAVVLKWI 264 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p--~~D~i~~~~v 264 (307)
.....+|||+|||+|.++..+++.. ..+++++|+ |..++.+++ ..++|+++.+|.++-.+ .||.|++.-.
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 3557899999999999999999874 468999999 888888776 57899999999988322 5999887532
Q ss_pred hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
- . +..+|..+.+.|++ ||.|.+.+.+-.+
T Consensus 202 ~----~--~~~~l~~a~~~lk~---gG~ih~~~~~~e~ 230 (278)
T 3k6r_A 202 V----R--THEFIPKALSIAKD---GAIIHYHNTVPEK 230 (278)
T ss_dssp S----S--GGGGHHHHHHHEEE---EEEEEEEEEEEGG
T ss_pred C----c--HHHHHHHHHHHcCC---CCEEEEEeeeccc
Confidence 1 1 24678889999998 8888777766543
No 232
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.70 E-value=4.9e-08 Score=84.51 Aligned_cols=84 Identities=11% Similarity=0.256 Sum_probs=63.2
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCC-Cc
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIP-PA 256 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p-~~ 256 (307)
.+.+++.+. .....+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..++++++.+|+.+ +++ ..
T Consensus 19 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~ 94 (244)
T 1qam_A 19 IDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ 94 (244)
T ss_dssp HHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred HHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCC
Confidence 345555555 4567799999999999999999985 68999999 888888876 23689999999988 555 23
Q ss_pred cEEEechhhccCCh
Q 037127 257 DAVVLKWILHDWND 270 (307)
Q Consensus 257 D~i~~~~vLh~~~~ 270 (307)
++.++++.-++++.
T Consensus 95 ~~~vv~nlPy~~~~ 108 (244)
T 1qam_A 95 SYKIFGNIPYNIST 108 (244)
T ss_dssp CCEEEEECCGGGHH
T ss_pred CeEEEEeCCcccCH
Confidence 44556665555543
No 233
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=98.70 E-value=2.6e-08 Score=90.15 Aligned_cols=99 Identities=14% Similarity=0.171 Sum_probs=74.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCC-CeEEEecCCCCC-------CCCccEEE
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLA-NLKYVGGDMFEA-------IPPADAVV 260 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~-rv~~~~~d~~~~-------~p~~D~i~ 260 (307)
+..+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ ..+ +++++++|+++. ...||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 45689999999999999999964 49999999 888888876 233 599999999872 12599999
Q ss_pred echhhcc-------CC-hhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 261 LKWILHD-------WN-DEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 261 ~~~vLh~-------~~-~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
+.-.... |. .++...+++++.+.|+| ||.+++....
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkp---gG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP---KALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT---TCCEEEEEEC
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCc---CcEEEEEECC
Confidence 8432110 00 12346899999999999 8887766544
No 234
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.69 E-value=4.6e-08 Score=91.05 Aligned_cols=108 Identities=10% Similarity=0.070 Sum_probs=78.3
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCC--CccE
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP--PADA 258 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p--~~D~ 258 (307)
++.+++.+. .....+|||+|||+|.++..+++++ +..+++++|+ +.+++.| .+++++++|+++..+ .||+
T Consensus 28 ~~~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----~~~~~~~~D~~~~~~~~~fD~ 101 (421)
T 2ih2_A 28 VDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----PWAEGILADFLLWEPGEAFDL 101 (421)
T ss_dssp HHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----TTEEEEESCGGGCCCSSCEEE
T ss_pred HHHHHHhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----CCCcEEeCChhhcCccCCCCE
Confidence 344444444 2345699999999999999999987 6789999999 6666555 589999999988433 5999
Q ss_pred EEechhhc----------cCChhH-----------------HHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 259 VVLKWILH----------DWNDEE-----------------CVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 259 i~~~~vLh----------~~~~~~-----------------~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
|++.=... +++++. ...+++++.+.|+| ||+++++-+.
T Consensus 102 Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---~G~~~~i~p~ 166 (421)
T 2ih2_A 102 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVVPA 166 (421)
T ss_dssp EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEEEG
T ss_pred EEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCC---CCEEEEEECh
Confidence 99842111 122221 12679999999999 8998877653
No 235
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=98.67 E-value=3.7e-08 Score=92.31 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=79.8
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCC---CC--CccEEEe--
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEA---IP--PADAVVL-- 261 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~---~p--~~D~i~~-- 261 (307)
..+..+|||+|||+|..+..+++..|+.+++++|+ +..++.+++ ..-+++++.+|+.+. ++ .||+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 45567999999999999999999998889999999 777777665 334689999999873 33 4999986
Q ss_pred ----chhhccCCh-------hHH-------HHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 262 ----KWILHDWND-------EEC-------VKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 262 ----~~vLh~~~~-------~~~-------~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
..+++..++ ++. ..+|+++.+.|+| ||++++.+..+
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp---GG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCC
Confidence 234443333 222 4889999999999 89988877544
No 236
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=98.66 E-value=9.1e-08 Score=80.09 Aligned_cols=89 Identities=18% Similarity=0.082 Sum_probs=71.1
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCCCCCccEEEechhhccCC
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEAIPPADAVVLKWILHDWN 269 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~~~ 269 (307)
....+|||+|||+|.++..+++..+ .+++++|+ +.+++.+++ ..-+++++.+|+.+-...+|+|++.-..|.+.
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence 3567999999999999999998743 47999999 888888876 11289999999987323699999999888876
Q ss_pred hhHHHHHHHHHHHhc
Q 037127 270 DEECVKILKKCKEAI 284 (307)
Q Consensus 270 ~~~~~~~L~~~~~~L 284 (307)
......+|+++.+.+
T Consensus 127 ~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 127 KHADRPFLLKAFEIS 141 (207)
T ss_dssp TTTTHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHhc
Confidence 544467888888776
No 237
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.63 E-value=1.9e-07 Score=88.57 Aligned_cols=102 Identities=17% Similarity=0.249 Sum_probs=78.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCC-CCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-C--CC-CccEEEec--
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFP-NLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A--IP-PADAVVLK-- 262 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p-~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~--~p-~~D~i~~~-- 262 (307)
...+|||+|||+|..+..+++..+ ..+++++|+ +..++.+++ ...+|+++.+|+.+ + .+ .||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 567999999999999999999875 478999999 777887765 34579999999987 2 34 49999872
Q ss_pred ----hhh-------ccCChhH-------HHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 263 ----WIL-------HDWNDEE-------CVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 263 ----~vL-------h~~~~~~-------~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
.++ +.|+.++ -.++|+++.++|+| ||++++....+
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP---GGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEecccC
Confidence 222 3354432 24789999999999 88888766543
No 238
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.60 E-value=7.1e-08 Score=90.86 Aligned_cols=102 Identities=14% Similarity=0.105 Sum_probs=77.7
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-C--CC-CccEEEe-
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A--IP-PADAVVL- 261 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~--~p-~~D~i~~- 261 (307)
.....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ... |.++.+|+.+ + .+ .||+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 456779999999999999999998865 68999999 778887765 234 9999999876 2 23 4999995
Q ss_pred ------------chhhccCChhHH-------HHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 262 ------------KWILHDWNDEEC-------VKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 262 ------------~~vLh~~~~~~~-------~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
..+...|+.++. .++|+++.+.|+| ||+++.....
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvysTCs 231 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP---GGVLVYSTCT 231 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEecc
Confidence 122334444333 6799999999999 8888775543
No 239
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.58 E-value=1.1e-07 Score=86.09 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=75.2
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCCCCccEEEechhhcc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAIPPADAVVLKWILHD 267 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~p~~D~i~~~~vLh~ 267 (307)
.+..+|||+|||+|.++.. ++ +..+++++|+ +.+++.+++ ..++++++.+|+++....||+|++.-.-
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~-- 268 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPK-- 268 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTT--
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcH--
Confidence 4567999999999999999 77 4779999999 888888876 2468999999998844569999984221
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 268 WNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
....+++.+.+.|+| ||.+++.+...
T Consensus 269 ----~~~~~l~~~~~~L~~---gG~l~~~~~~~ 294 (336)
T 2yx1_A 269 ----FAHKFIDKALDIVEE---GGVIHYYTIGK 294 (336)
T ss_dssp ----TGGGGHHHHHHHEEE---EEEEEEEEEES
T ss_pred ----hHHHHHHHHHHHcCC---CCEEEEEEeec
Confidence 123789999999998 88888877654
No 240
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.58 E-value=7.8e-08 Score=88.43 Aligned_cols=90 Identities=16% Similarity=0.109 Sum_probs=70.1
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-CCC--CccEEEechh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP--PADAVVLKWI 264 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p--~~D~i~~~~v 264 (307)
.+..+|||+|||+|.++..+++..+..+++++|+ +.+++.|++ ..++++++.+|+.+ +.+ .+|+|++.-.
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP 295 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence 4567899999999999999999988778999999 888988876 23689999999988 443 5999999655
Q ss_pred hccCC-----hhH-HHHHHHHHHHhc
Q 037127 265 LHDWN-----DEE-CVKILKKCKEAI 284 (307)
Q Consensus 265 Lh~~~-----~~~-~~~~L~~~~~~L 284 (307)
.+... -++ -..+++.+++.|
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l 321 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVL 321 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHE
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHc
Confidence 43211 111 257888999988
No 241
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.57 E-value=1.8e-08 Score=87.26 Aligned_cols=108 Identities=14% Similarity=0.206 Sum_probs=74.3
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCCC-c
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIPP-A 256 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p~-~ 256 (307)
...+++.+. .....+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..++++++.+|+.+ +.+. .
T Consensus 18 ~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~ 93 (245)
T 1yub_A 18 LNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ 93 (245)
T ss_dssp HHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSS
T ss_pred HHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCC
Confidence 345566555 5567799999999999999999985 78999999 778877775 24689999999988 4442 1
Q ss_pred cEEEechhhccCChhHHHHH----------H----HHHHHhccCCCCCcEEEEEe
Q 037127 257 DAVVLKWILHDWNDEECVKI----------L----KKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~----------L----~~~~~~L~p~~~gg~lli~e 297 (307)
.+.++++.-++.+......+ + +.+.+.|+| ||++.++.
T Consensus 94 ~f~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~---~G~l~v~~ 145 (245)
T 1yub_A 94 RYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---HRTLGLLL 145 (245)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCG---GGSHHHHT
T ss_pred CcEEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCC---CCchhhhh
Confidence 22344443333333322232 3 568888888 78766543
No 242
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.53 E-value=2.5e-07 Score=82.20 Aligned_cols=84 Identities=11% Similarity=0.173 Sum_probs=64.7
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC-CCCC--
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE-AIPP-- 255 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~-~~p~-- 255 (307)
...+++... .....+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..++++++.+|+.+ +++.
T Consensus 39 ~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~ 114 (295)
T 3gru_A 39 VNKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLD 114 (295)
T ss_dssp HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSC
T ss_pred HHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCC
Confidence 344555555 556779999999999999999998 568999999 888888876 35789999999998 5553
Q ss_pred ccEEEechhhccCChh
Q 037127 256 ADAVVLKWILHDWNDE 271 (307)
Q Consensus 256 ~D~i~~~~vLh~~~~~ 271 (307)
+|+|+.+-. ++++.+
T Consensus 115 fD~Iv~NlP-y~is~p 129 (295)
T 3gru_A 115 FNKVVANLP-YQISSP 129 (295)
T ss_dssp CSEEEEECC-GGGHHH
T ss_pred ccEEEEeCc-ccccHH
Confidence 898886533 334443
No 243
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.53 E-value=8.3e-08 Score=88.94 Aligned_cols=100 Identities=19% Similarity=0.147 Sum_probs=75.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCCCeEEEecCCCCCC------C-CccEEEe
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLANLKYVGGDMFEAI------P-PADAVVL 261 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~~------p-~~D~i~~ 261 (307)
+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..++++|+.+|+++.. + .||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5679999999999999999986 4458999999 888888876 2238999999987621 2 5999998
Q ss_pred chhhccCCh-------hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 262 KWILHDWND-------EECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 262 ~~vLh~~~~-------~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
.-.-+..+. .....+++++.+.|+| ||.+++....
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~~ 337 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCSCS 337 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEECC
Confidence 532221111 3456789999999999 8888777543
No 244
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.50 E-value=4.4e-07 Score=83.91 Aligned_cols=113 Identities=10% Similarity=0.037 Sum_probs=81.5
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCC--------------------------------------CeEE
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPN--------------------------------------LECT 224 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~--------------------------------------~~~~ 224 (307)
+..++.... +.+...|||.+||+|.++++.+....+ .+++
T Consensus 190 Aa~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 267 (393)
T 3k0b_A 190 AAALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII 267 (393)
T ss_dssp HHHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence 344555555 456678999999999999998876543 5699
Q ss_pred Eecc-hHHHHhchh------cCCCeEEEecCCCC-CCC-CccEEEechhhcc-CC-hhHHHHHHHHHHHhccCCCCCcEE
Q 037127 225 DFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP-PADAVVLKWILHD-WN-DEECVKILKKCKEAITSNSKIGKV 293 (307)
Q Consensus 225 ~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~-~~-~~~~~~~L~~~~~~L~p~~~gg~l 293 (307)
++|+ +.+++.|++ ..++|+++.+|+.+ +.+ .+|+|++.=.... .. .++...+.+.+.+.|++ -+|+++
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~ 346 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR-MPTWSV 346 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-CTTCEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc-CCCCEE
Confidence 9999 889988876 35679999999988 333 5999998744322 12 23455677777777764 248888
Q ss_pred EEEee
Q 037127 294 IIIDM 298 (307)
Q Consensus 294 li~e~ 298 (307)
+|+..
T Consensus 347 ~iit~ 351 (393)
T 3k0b_A 347 YVLTS 351 (393)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88754
No 245
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.49 E-value=1.3e-07 Score=87.22 Aligned_cols=99 Identities=16% Similarity=0.121 Sum_probs=75.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCC------C-CccEEEec
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAI------P-PADAVVLK 262 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~------p-~~D~i~~~ 262 (307)
+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ ..++++++.+|+++.. + .||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5678999999999999999998 568999999 888888876 2345999999987621 3 59999984
Q ss_pred hhhccCCh-------hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 263 WILHDWND-------EECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 263 ~vLh~~~~-------~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
-.-+..+. +....+++.+.+.|+| ||.+++....
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~ 327 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATASCS 327 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEECC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECC
Confidence 33221111 3346799999999999 8888877643
No 246
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.48 E-value=1.3e-06 Score=80.46 Aligned_cols=113 Identities=14% Similarity=0.067 Sum_probs=83.9
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCC--------------------------------------CeEE
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPN--------------------------------------LECT 224 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~--------------------------------------~~~~ 224 (307)
+..++.... +.+...|+|.+||+|.++++.+....+ .+++
T Consensus 183 Aaall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~ 260 (384)
T 3ldg_A 183 AAAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS 260 (384)
T ss_dssp HHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence 344555445 456678999999999999998865444 5699
Q ss_pred Eecc-hHHHHhchh------cCCCeEEEecCCCC-CCC-CccEEEechhhcc-CC-hhHHHHHHHHHHHhccCCCCCcEE
Q 037127 225 DFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP-PADAVVLKWILHD-WN-DEECVKILKKCKEAITSNSKIGKV 293 (307)
Q Consensus 225 ~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~-~~-~~~~~~~L~~~~~~L~p~~~gg~l 293 (307)
++|+ +.+++.|++ ..++++|+.+|+.+ +.+ .+|+|++.=..+. .. .++...+.+.+.+.|++ -+|+++
T Consensus 261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~-~~g~~~ 339 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP-LKTWSQ 339 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT-CTTSEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh-CCCcEE
Confidence 9999 888988876 45689999999988 333 5999998754432 33 35667788888888875 348888
Q ss_pred EEEee
Q 037127 294 IIIDM 298 (307)
Q Consensus 294 li~e~ 298 (307)
.|+..
T Consensus 340 ~iit~ 344 (384)
T 3ldg_A 340 FILTN 344 (384)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 88765
No 247
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.47 E-value=2.2e-07 Score=87.41 Aligned_cols=101 Identities=13% Similarity=0.081 Sum_probs=76.3
Q ss_pred cCCCeEEEecCCchHHHHHHHHHC-------------CCCeEEEecc-hHHHHhchh-----cCC--CeEEEecCCCCC-
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAF-------------PNLECTDFDL-PHVVNGLES-----DLA--NLKYVGGDMFEA- 252 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~-------------p~~~~~~~Dl-~~~~~~a~~-----~~~--rv~~~~~d~~~~- 252 (307)
....+|+|.|||+|.++..+++.. +..+++|+|+ +.+++.|+. ... ++.+.++|.+..
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~ 249 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE 249 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCc
Confidence 445689999999999999988763 4568999999 778877765 122 788999999883
Q ss_pred CC-CccEEEechhhccCCh---------------hHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 253 IP-PADAVVLKWILHDWND---------------EECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 253 ~p-~~D~i~~~~vLh~~~~---------------~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.. .||+|++.-..+.... +....+++++.+.|+| ||++.++-+
T Consensus 250 ~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---gG~~a~V~p 308 (445)
T 2okc_A 250 PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP 308 (445)
T ss_dssp CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhcc---CCEEEEEEC
Confidence 22 6999998765543211 1124789999999999 899988764
No 248
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=98.46 E-value=1.6e-07 Score=86.71 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=73.2
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cCC-CeEEEecCCCCCC------C-CccEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DLA-NLKYVGGDMFEAI------P-PADAV 259 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~~-rv~~~~~d~~~~~------p-~~D~i 259 (307)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++ ..+ +++|+++|+++.. + .||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 346799999999999999999863 348999999 888888876 233 8999999987621 2 59999
Q ss_pred Eechhh-----ccCCh--hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 260 VLKWIL-----HDWND--EECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 260 ~~~~vL-----h~~~~--~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
++.-.. ....+ +...++++.+.+.|+| ||.+++..
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~p---gG~l~~~~ 331 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIAST 331 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence 984332 12222 2335688899999999 77776654
No 249
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.45 E-value=1.8e-07 Score=86.60 Aligned_cols=100 Identities=13% Similarity=0.042 Sum_probs=75.0
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------c-CCCeEEEecCCCCC-------CCCccEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------D-LANLKYVGGDMFEA-------IPPADAV 259 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~-~~rv~~~~~d~~~~-------~p~~D~i 259 (307)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ . .++++|+.+|+++. ...||+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 346799999999999999999874 458999999 888888876 2 23899999998772 1259999
Q ss_pred EechhhccCC-------hhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 260 VLKWILHDWN-------DEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 260 ~~~~vLh~~~-------~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
++.-.-...+ ......++.++.+.|+| ||.+++...
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~ 340 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNE---GGILLTFSC 340 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeC
Confidence 9863221110 13456899999999999 787776543
No 250
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.42 E-value=4e-07 Score=81.16 Aligned_cols=77 Identities=19% Similarity=0.202 Sum_probs=61.7
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCC-C--C--
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFE-A--I-- 253 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~-~--~-- 253 (307)
+.++..+. .....+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ ..++++++++|+.+ + .
T Consensus 16 ~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 16 REVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 44555444 45667999999999999999999999889999999 889988876 23799999999865 2 1
Q ss_pred ---CCccEEEec
Q 037127 254 ---PPADAVVLK 262 (307)
Q Consensus 254 ---p~~D~i~~~ 262 (307)
..+|.|++.
T Consensus 94 ~g~~~~D~Vl~D 105 (301)
T 1m6y_A 94 LGIEKVDGILMD 105 (301)
T ss_dssp TTCSCEEEEEEE
T ss_pred cCCCCCCEEEEc
Confidence 358988763
No 251
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.42 E-value=9.7e-07 Score=81.42 Aligned_cols=113 Identities=13% Similarity=0.073 Sum_probs=81.5
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCC--------------------------------------CeEE
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPN--------------------------------------LECT 224 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~--------------------------------------~~~~ 224 (307)
+..++.... +.+..+|||.+||+|.++++++....+ .+++
T Consensus 184 Aa~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 261 (385)
T 3ldu_A 184 AAGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY 261 (385)
T ss_dssp HHHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred HHHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence 344555455 456678999999999999999876432 5799
Q ss_pred Eecc-hHHHHhchh------cCCCeEEEecCCCC-CCC-CccEEEechhhcc-CC-hhHHHHHHHHHHHhccCCCCCcEE
Q 037127 225 DFDL-PHVVNGLES------DLANLKYVGGDMFE-AIP-PADAVVLKWILHD-WN-DEECVKILKKCKEAITSNSKIGKV 293 (307)
Q Consensus 225 ~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~-~~-~~~~~~~L~~~~~~L~p~~~gg~l 293 (307)
++|+ +.+++.|+. ..++|+|.++|+.+ +.+ .+|+|++.=.... +. .++...+.+.+.+.|++ -+|+++
T Consensus 262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~ 340 (385)
T 3ldu_A 262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK-LKNWSY 340 (385)
T ss_dssp EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-SBSCEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh-CCCCEE
Confidence 9999 889998876 34589999999988 333 4999998655332 22 24556777777777764 237888
Q ss_pred EEEee
Q 037127 294 IIIDM 298 (307)
Q Consensus 294 li~e~ 298 (307)
.|+..
T Consensus 341 ~iit~ 345 (385)
T 3ldu_A 341 YLITS 345 (385)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 88754
No 252
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.41 E-value=3.5e-07 Score=86.02 Aligned_cols=104 Identities=15% Similarity=0.202 Sum_probs=77.1
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh-----cCCCeEEEecCCCC-C--CC-CccEEEec
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES-----DLANLKYVGGDMFE-A--IP-PADAVVLK 262 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~--~p-~~D~i~~~ 262 (307)
.....+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ...+|.+..+|..+ + .+ .||+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 456779999999999999999988654 68999999 777777765 34579999999876 1 33 49999873
Q ss_pred h------hh-------ccCChhHH-------HHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 263 W------IL-------HDWNDEEC-------VKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 263 ~------vL-------h~~~~~~~-------~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
- ++ ..|+.++. .++|+++.+.|+| ||+++.....+
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN---KGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE---EEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEeec
Confidence 2 12 22333221 3789999999999 88887765433
No 253
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.41 E-value=1.4e-06 Score=81.70 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=55.1
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCC-----C--CccEEE
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAI-----P--PADAVV 260 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~-----p--~~D~i~ 260 (307)
..+..+|||+|||+|.++..+++. ..+++++|. +.+++.|++ ..++++|+.+|+.+.. + .||+|+
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv 361 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 361 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence 345679999999999999999987 678999999 888888876 2358999999998732 1 489998
Q ss_pred ec
Q 037127 261 LK 262 (307)
Q Consensus 261 ~~ 262 (307)
+.
T Consensus 362 ~d 363 (433)
T 1uwv_A 362 LD 363 (433)
T ss_dssp EC
T ss_pred EC
Confidence 73
No 254
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.41 E-value=7.3e-07 Score=77.33 Aligned_cols=93 Identities=19% Similarity=0.268 Sum_probs=67.4
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCC-CCCC-c-cE
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFE-AIPP-A-DA 258 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~-~~p~-~-D~ 258 (307)
+.+++.+. .....+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ...+++++.+|+.+ +++. + +.
T Consensus 21 ~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 21 KKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp HHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred HHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence 44555555 456779999999999999999987 4578999999 888888875 34689999999988 4442 1 45
Q ss_pred EEechhhccCChhHHHHHHHHHHHh
Q 037127 259 VVLKWILHDWNDEECVKILKKCKEA 283 (307)
Q Consensus 259 i~~~~vLh~~~~~~~~~~L~~~~~~ 283 (307)
.++.+.=++.+. .+|.++.+.
T Consensus 98 ~vv~NlPy~i~~----~il~~ll~~ 118 (249)
T 3ftd_A 98 KVVGNLPYNVAS----LIIENTVYN 118 (249)
T ss_dssp EEEEECCTTTHH----HHHHHHHHT
T ss_pred EEEEECchhccH----HHHHHHHhc
Confidence 666666555544 445555443
No 255
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.39 E-value=6.5e-07 Score=82.79 Aligned_cols=100 Identities=13% Similarity=0.075 Sum_probs=72.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----cCCCeEEEecCCCCC---CC-CccEEEechhhc
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----DLANLKYVGGDMFEA---IP-PADAVVLKWILH 266 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~~~rv~~~~~d~~~~---~p-~~D~i~~~~vLh 266 (307)
+..+|||+|||+|.++..+++. +.+++++|+ +.+++.+++ ..-..++.++|+++. .+ .||+|++.-...
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 4679999999999999999997 445999999 888888876 111235668998772 22 499999863321
Q ss_pred cCCh-------hHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 267 DWND-------EECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 267 ~~~~-------~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
..+. ..-..+++.+.+.|+| ||+++++....
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~Lkp---GG~Lv~~s~s~ 329 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAE---EGFLWLSSCSY 329 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEE---EEEEEEEECCT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCC
Confidence 1111 1235789999999999 88888776544
No 256
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.39 E-value=4e-07 Score=88.53 Aligned_cols=128 Identities=16% Similarity=0.139 Sum_probs=86.0
Q ss_pred ccccccCCcHHHHHHHHHHHhchhhhHHHHHHhcccc--ccCCCeEEEecCCchHHHHHHH---HHC-CCCeEEEecchH
Q 037127 157 FWEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNV--FEGLNSLVDVGGATGTVAKAIA---KAF-PNLECTDFDLPH 230 (307)
Q Consensus 157 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~--~~~~~~vlDvGgG~G~~~~~l~---~~~-p~~~~~~~Dl~~ 230 (307)
.|+.+++++-....|.+++... +....... ..+...|+|||||+|-++...+ ++. -.+++++++-.+
T Consensus 323 tYevFEkD~vKy~~Ye~AI~~A-------l~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp 395 (637)
T 4gqb_A 323 TYEVFEKDPIKYSQYQQAIYKC-------LLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP 395 (637)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-------HHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH
T ss_pred hhhhhcCChhhHHHHHHHHHHH-------HHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 3677778887777777766532 22211110 1234679999999998844333 332 234789999866
Q ss_pred HHHhchh------cCCCeEEEecCCCC-CCC-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEE
Q 037127 231 VVNGLES------DLANLKYVGGDMFE-AIP-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVI 294 (307)
Q Consensus 231 ~~~~a~~------~~~rv~~~~~d~~~-~~p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~ll 294 (307)
++..+++ ..++|+++.+|+.+ ..| .+|+|+.=+.-+....|-....|....+.||| ||.++
T Consensus 396 ~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKP---gGimi 464 (637)
T 4gqb_A 396 NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKD---DGVSI 464 (637)
T ss_dssp HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEE---EEEEE
T ss_pred HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCC---CcEEc
Confidence 6666655 68899999999999 677 49998776655544444445667777788998 67653
No 257
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.38 E-value=6.7e-07 Score=81.13 Aligned_cols=98 Identities=16% Similarity=0.112 Sum_probs=71.8
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cC------------CCeEEEecCCCCC-------C
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DL------------ANLKYVGGDMFEA-------I 253 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~------------~rv~~~~~d~~~~-------~ 253 (307)
.++++|||||||+|..+.++++..+ .+++.+|+ |.+++.+++ .. +|++++.+|.++- .
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~ 265 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 265 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccC
Confidence 3578999999999999999999765 78999999 889998887 11 2899999999871 1
Q ss_pred CCccEEEechhh-cc-CChh--HHHHHHHHH----HHhccCCCCCcEEEEE
Q 037127 254 PPADAVVLKWIL-HD-WNDE--ECVKILKKC----KEAITSNSKIGKVIII 296 (307)
Q Consensus 254 p~~D~i~~~~vL-h~-~~~~--~~~~~L~~~----~~~L~p~~~gg~lli~ 296 (307)
..||+|++.-.- .. .... -...+++.+ +++|+| ||.+++.
T Consensus 266 ~~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~p---gGilv~q 313 (364)
T 2qfm_A 266 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFTQ 313 (364)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred CCceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCC---CcEEEEE
Confidence 259999886532 10 0010 124566666 899999 6766654
No 258
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.37 E-value=1.1e-06 Score=77.10 Aligned_cols=90 Identities=16% Similarity=0.137 Sum_probs=66.7
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCC-CCC---Cc
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE-AIP---PA 256 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~-~~p---~~ 256 (307)
+.+++... .... +|||||||+|.++..+++.. .+++++|+ +.+++.+++ ...+++++.+|+.+ +++ .+
T Consensus 37 ~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 37 RRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 44555554 4455 99999999999999999984 68999999 888888876 34689999999988 444 35
Q ss_pred cEEEechhhccCChhHHHHHHHH
Q 037127 257 DAVVLKWILHDWNDEECVKILKK 279 (307)
Q Consensus 257 D~i~~~~vLh~~~~~~~~~~L~~ 279 (307)
|. ++++.-++.+.+-..++|..
T Consensus 112 ~~-iv~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 112 SL-LVANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EE-EEEEECSSCCHHHHHHHHHH
T ss_pred cE-EEecCcccccHHHHHHHhcC
Confidence 54 55566666776555555544
No 259
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.37 E-value=8e-07 Score=78.68 Aligned_cols=93 Identities=14% Similarity=0.104 Sum_probs=67.1
Q ss_pred ccCCCeEEEecC------CchHHHHHHHHHCC-CCeEEEecchHHHHhchhcCCCeEE-EecCCCC-CCC-CccEEEech
Q 037127 194 FEGLNSLVDVGG------ATGTVAKAIAKAFP-NLECTDFDLPHVVNGLESDLANLKY-VGGDMFE-AIP-PADAVVLKW 263 (307)
Q Consensus 194 ~~~~~~vlDvGg------G~G~~~~~l~~~~p-~~~~~~~Dl~~~~~~a~~~~~rv~~-~~~d~~~-~~p-~~D~i~~~~ 263 (307)
+.+..+|||||| |+|. ..+++..| +.+++++|+.+. . +++++ +.+|+.+ +.+ .||+|++..
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~---v----~~v~~~i~gD~~~~~~~~~fD~Vvsn~ 131 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF---V----SDADSTLIGDCATVHTANKWDLIISDM 131 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC---B----CSSSEEEESCGGGCCCSSCEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC---C----CCCEEEEECccccCCccCcccEEEEcC
Confidence 456779999999 4476 55667776 689999999443 1 47889 9999987 344 599999854
Q ss_pred hhcc---C--C----hhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 264 ILHD---W--N----DEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 264 vLh~---~--~----~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
..+. + + .+....+|+.++++|+| ||++++...
T Consensus 132 ~~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lkp---GG~~v~~~~ 172 (290)
T 2xyq_A 132 YDPRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVKIT 172 (290)
T ss_dssp CCCC---CCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred CccccccccccccchHHHHHHHHHHHHHhcCC---CcEEEEEEe
Confidence 3211 0 1 12345789999999999 899888554
No 260
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=98.32 E-value=1.7e-06 Score=76.42 Aligned_cols=100 Identities=15% Similarity=0.158 Sum_probs=77.2
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----------cCCCeEEEecCCCCCC---C-CccEE
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----------DLANLKYVGGDMFEAI---P-PADAV 259 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----------~~~rv~~~~~d~~~~~---p-~~D~i 259 (307)
..+++||-||+|.|..+.++++..|..+++++|+ |.|++.+++ ..+|++++.+|.++-+ + .||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 5678999999999999999999877779999999 889988876 2589999999998732 2 59999
Q ss_pred EechhhccCChh--HHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 260 VLKWILHDWNDE--ECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 260 ~~~~vLh~~~~~--~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
++-..=..-+.. -...+++.++++|+| ||.++..-
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p---~Gv~v~q~ 198 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNP---GGIFVAQN 198 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEE---EEEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCC---CCEEEEec
Confidence 875432111111 114789999999999 77777653
No 261
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.32 E-value=2.4e-06 Score=79.79 Aligned_cols=91 Identities=13% Similarity=0.104 Sum_probs=67.1
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCCCC-CccEEEechhhcc
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEAIP-PADAVVLKWILHD 267 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~~p-~~D~i~~~~vLh~ 267 (307)
.+..+|||+|||+|.++..+++. ..+++++|. +.+++.|++ ..+ ++|+.+|+.+..+ .||+|++.-.-..
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG 365 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence 45678999999999999999987 458999999 888888876 234 9999999988544 5999998433211
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 268 WNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
.. ..+++.++ .++| +|.+++.
T Consensus 366 ~~----~~~~~~l~-~l~p---~givyvs 386 (425)
T 2jjq_A 366 LH----PRLVKRLN-REKP---GVIVYVS 386 (425)
T ss_dssp SC----HHHHHHHH-HHCC---SEEEEEE
T ss_pred hH----HHHHHHHH-hcCC---CcEEEEE
Confidence 11 13455554 4788 7776664
No 262
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.27 E-value=2.5e-06 Score=84.58 Aligned_cols=99 Identities=10% Similarity=0.106 Sum_probs=74.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------cC-CCeEEEecCCCCC---CC-CccEEEech
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------DL-ANLKYVGGDMFEA---IP-PADAVVLKW 263 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~~-~rv~~~~~d~~~~---~p-~~D~i~~~~ 263 (307)
+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ .. ++++++++|+++. .. .||+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 46789999999999999999853 346999999 888888876 22 5899999999872 22 599999854
Q ss_pred hhc--------cCC-hhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 264 ILH--------DWN-DEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 264 vLh--------~~~-~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.-. .|. ...-.++++.+.+.|+| ||.+++...
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp---gG~L~~s~~ 658 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA---GGTIMFSNN 658 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEC
Confidence 221 121 13456889999999999 788875543
No 263
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.25 E-value=1.4e-06 Score=75.74 Aligned_cols=64 Identities=13% Similarity=0.236 Sum_probs=53.3
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh---cCCCeEEEecCCCC
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES---DLANLKYVGGDMFE 251 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~---~~~rv~~~~~d~~~ 251 (307)
..+++... .....+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..++++++.+|+.+
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~ 86 (255)
T 3tqs_A 19 QKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQ 86 (255)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTT
T ss_pred HHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHh
Confidence 44555555 5567799999999999999999984 68999999 888888877 34799999999998
No 264
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.22 E-value=7.6e-07 Score=78.50 Aligned_cols=69 Identities=14% Similarity=0.232 Sum_probs=54.6
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCC--CeEEEecc-hHHHHhchh-cCCCeEEEecCCCC-CCC
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPN--LECTDFDL-PHVVNGLES-DLANLKYVGGDMFE-AIP 254 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~--~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~-~~p 254 (307)
+.+++.+. .....+|||||||+|.++..|++..+. .+++++|+ +.+++.+++ ..++++++.+|+.+ +++
T Consensus 32 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 32 DAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred HHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence 34555554 456779999999999999999998654 45999999 888888875 35689999999987 443
No 265
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=98.14 E-value=2.5e-06 Score=83.09 Aligned_cols=126 Identities=13% Similarity=0.087 Sum_probs=81.1
Q ss_pred cccccCCcHHHHHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHH----C---------CCCeEE
Q 037127 158 WEYAGDEPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA----F---------PNLECT 224 (307)
Q Consensus 158 ~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~----~---------p~~~~~ 224 (307)
|+.+++++-+...|.+++...- ..+.+. ..+.+.|+|||||+|-++...+++ . ...+++
T Consensus 379 Ye~fekD~vRy~~Y~~AI~~al----~d~~~~----~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVy 450 (745)
T 3ua3_A 379 YNTFEQDQIKYDVYGEAVVGAL----KDLGAD----GRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLY 450 (745)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHH----HHHHTT----CCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred HHHHcCChhhHHHHHHHHHHHH----HHhhcc----cCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEE
Confidence 5666666666666666655421 111110 123568999999999997533222 1 235899
Q ss_pred Eecc-hHHHHhchh-----cCCCeEEEecCCCC-CC------C-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCC
Q 037127 225 DFDL-PHVVNGLES-----DLANLKYVGGDMFE-AI------P-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKI 290 (307)
Q Consensus 225 ~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~-~~------p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~g 290 (307)
++|- |..+..++. ..++|+++.+|+.+ .. | .+|+|+.=+.-+....+-....|..+.+.|+| |
T Consensus 451 AVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp---~ 527 (745)
T 3ua3_A 451 IVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKP---T 527 (745)
T ss_dssp EEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCT---T
T ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCC---C
Confidence 9998 433322222 67899999999998 44 4 59998877766544555455678888899998 7
Q ss_pred cEEE
Q 037127 291 GKVI 294 (307)
Q Consensus 291 g~ll 294 (307)
|.++
T Consensus 528 Gi~i 531 (745)
T 3ua3_A 528 TISI 531 (745)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 7644
No 266
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.13 E-value=2.1e-06 Score=74.59 Aligned_cols=90 Identities=9% Similarity=0.069 Sum_probs=61.7
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c--CCCeEEEecCCCC-CCCC---
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D--LANLKYVGGDMFE-AIPP--- 255 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~--~~rv~~~~~d~~~-~~p~--- 255 (307)
..+++.+. .....+|||||||+|.++. +. ..+..+++++|+ +.+++.+++ . .++++++.+|+.+ +++.
T Consensus 11 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 11 DSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 44555554 4556789999999999999 64 444444999999 889998886 2 2589999999988 4332
Q ss_pred ---ccEEEechhhccCChhHHHHHH
Q 037127 256 ---ADAVVLKWILHDWNDEECVKIL 277 (307)
Q Consensus 256 ---~D~i~~~~vLh~~~~~~~~~~L 277 (307)
.+.+++++.-++.+.+-..++|
T Consensus 87 ~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred ccCCceEEEECCCCCccHHHHHHHH
Confidence 2356666655555544333333
No 267
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=98.12 E-value=5e-06 Score=72.42 Aligned_cols=70 Identities=19% Similarity=0.187 Sum_probs=54.8
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-h-------HHHHhchh------cCCCeEEEecCCCCC---C---
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-P-------HVVNGLES------DLANLKYVGGDMFEA---I--- 253 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~-------~~~~~a~~------~~~rv~~~~~d~~~~---~--- 253 (307)
.....+|||+|||+|.++..+++. +.+++++|+ | .+++.+++ ..+|++++.+|+.+. +
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 344568999999999999999996 568999999 7 66776654 246799999998762 3
Q ss_pred -CCccEEEechhh
Q 037127 254 -PPADAVVLKWIL 265 (307)
Q Consensus 254 -p~~D~i~~~~vL 265 (307)
..||+|++.-..
T Consensus 159 ~~~fD~V~~dP~~ 171 (258)
T 2r6z_A 159 QGKPDIVYLDPMY 171 (258)
T ss_dssp HCCCSEEEECCCC
T ss_pred CCCccEEEECCCC
Confidence 359999985443
No 268
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=98.07 E-value=3.3e-06 Score=77.42 Aligned_cols=89 Identities=9% Similarity=0.134 Sum_probs=64.9
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC---C--------------
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA---I-------------- 253 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~---~-------------- 253 (307)
..+|||+|||+|.++..+++. ..+++++|. +.+++.|++ ..++++|+.+|+.+- .
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 468999999999999999885 358999999 888888876 236899999998651 1
Q ss_pred --CCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 254 --PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 254 --p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
..+|+|++.- |.. .+..++.+.|++ +|+++++..
T Consensus 292 ~~~~fD~Vv~dP-----Pr~---g~~~~~~~~l~~---~g~ivyvsc 327 (369)
T 3bt7_A 292 KSYQCETIFVDP-----PRS---GLDSETEKMVQA---YPRILYISC 327 (369)
T ss_dssp GGCCEEEEEECC-----CTT---CCCHHHHHHHTT---SSEEEEEES
T ss_pred ccCCCCEEEECc-----Ccc---ccHHHHHHHHhC---CCEEEEEEC
Confidence 1589987632 211 234455566666 788887753
No 269
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=98.04 E-value=9.5e-06 Score=78.04 Aligned_cols=111 Identities=13% Similarity=0.114 Sum_probs=77.5
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCC------------------CCeEEEecc-hHHHHhchh-----c
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFP------------------NLECTDFDL-PHVVNGLES-----D 238 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p------------------~~~~~~~Dl-~~~~~~a~~-----~ 238 (307)
+..+++.+. .....+|+|.+||+|.++..+.+... ..+++++|+ +.+++.|+. .
T Consensus 158 v~~mv~~l~--p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~g 235 (541)
T 2ar0_A 158 IKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 235 (541)
T ss_dssp HHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhc--cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhC
Confidence 344444433 34456899999999999998876532 247999999 777777765 2
Q ss_pred CC-----CeEEEecCCCCC----CCCccEEEechhhccCC------------hhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 239 LA-----NLKYVGGDMFEA----IPPADAVVLKWILHDWN------------DEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 239 ~~-----rv~~~~~d~~~~----~p~~D~i~~~~vLh~~~------------~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
.+ ++.+.++|.+.. ...||+|++.=...... .+....+++++.+.|+| ||++.++-
T Consensus 236 i~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~a~V~ 312 (541)
T 2ar0_A 236 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAVVV 312 (541)
T ss_dssp CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred CCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC---CCEEEEEe
Confidence 22 278999999872 23699998865443211 11224789999999998 89988875
Q ss_pred e
Q 037127 298 M 298 (307)
Q Consensus 298 ~ 298 (307)
+
T Consensus 313 p 313 (541)
T 2ar0_A 313 P 313 (541)
T ss_dssp E
T ss_pred c
Confidence 4
No 270
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.04 E-value=2e-05 Score=78.17 Aligned_cols=113 Identities=10% Similarity=0.049 Sum_probs=76.4
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHH------------------------------------------CCCC
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA------------------------------------------FPNL 221 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~------------------------------------------~p~~ 221 (307)
..++.... +.+...|||.+||+|.++++.+.. .+..
T Consensus 180 a~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 180 AAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 44455444 455678999999999999988764 2346
Q ss_pred eEEEecc-hHHHHhchh------cCCCeEEEecCCCCC-CC----CccEEEechhhcc-CC-hhHHHHHHHHHHHhccCC
Q 037127 222 ECTDFDL-PHVVNGLES------DLANLKYVGGDMFEA-IP----PADAVVLKWILHD-WN-DEECVKILKKCKEAITSN 287 (307)
Q Consensus 222 ~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~~-~p----~~D~i~~~~vLh~-~~-~~~~~~~L~~~~~~L~p~ 287 (307)
+++++|+ +.+++.|+. ..++|+|..+|+.+- .| .+|+|+++=.... +. .++...+.+.+.+.++..
T Consensus 258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~ 337 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ 337 (703)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence 8999999 889988876 456799999999872 22 5899988743321 22 234455566555555411
Q ss_pred CCCcEEEEEee
Q 037127 288 SKIGKVIIIDM 298 (307)
Q Consensus 288 ~~gg~lli~e~ 298 (307)
-|||+++|+..
T Consensus 338 ~~g~~~~ilt~ 348 (703)
T 3v97_A 338 FGGWNLSLFSA 348 (703)
T ss_dssp CTTCEEEEEES
T ss_pred CCCCeEEEEeC
Confidence 12899988754
No 271
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=98.01 E-value=0.00012 Score=66.12 Aligned_cols=104 Identities=16% Similarity=0.202 Sum_probs=87.5
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh----c----------------------CCCeEEEecC
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES----D----------------------LANLKYVGGD 248 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~----~----------------------~~rv~~~~~d 248 (307)
.+...||.+|||.......+...+|+++++-+|.|.+++.-++ . .+++.+++.|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 3567899999999999999999888999999999998776443 1 3789999999
Q ss_pred CCCC---------C--C-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 249 MFEA---------I--P-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 249 ~~~~---------~--p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
+.+. . + ...++++--+|++++.+++..+|+.+.+.++ +|.+++.|.+.+.
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~~----~~~~v~~e~i~~~ 237 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS----HGLWISYDPIGGS 237 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS----SEEEEEEEECCCC
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhCC----CcEEEEEeccCCC
Confidence 9872 1 1 2688899999999999999999999999884 6889999998873
No 272
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=97.99 E-value=1.5e-05 Score=73.18 Aligned_cols=92 Identities=13% Similarity=0.024 Sum_probs=71.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----c---------------C-CCeEEEecCCCCC--
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----D---------------L-ANLKYVGGDMFEA-- 252 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~---------------~-~rv~~~~~d~~~~-- 252 (307)
...+|||+|||+|..+..++++.+..+++++|+ +..++.+++ . . ++++++.+|+.+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 466899999999999999999988889999999 888887775 2 2 2389999998762
Q ss_pred -CC-CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 253 -IP-PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 253 -~p-~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
.+ .||+|++.= +.. ...+|..+.+.+++ ||.+++.
T Consensus 127 ~~~~~fD~I~lDP----~~~--~~~~l~~a~~~lk~---gG~l~vt 163 (378)
T 2dul_A 127 ERHRYFHFIDLDP----FGS--PMEFLDTALRSAKR---RGILGVT 163 (378)
T ss_dssp HSTTCEEEEEECC----SSC--CHHHHHHHHHHEEE---EEEEEEE
T ss_pred hccCCCCEEEeCC----CCC--HHHHHHHHHHhcCC---CCEEEEE
Confidence 23 599988532 111 14789999999998 7877665
No 273
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=97.96 E-value=1.8e-05 Score=68.66 Aligned_cols=99 Identities=10% Similarity=0.022 Sum_probs=62.0
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhc----CCCeEEEecCCCC-CCC--CccEEEechhhc
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESD----LANLKYVGGDMFE-AIP--PADAVVLKWILH 266 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~----~~rv~~~~~d~~~-~~p--~~D~i~~~~vLh 266 (307)
+....+|||||||+|.++..+++..+-.++.++|+..-+..-... ...+.....++.. .++ .+|+|++....+
T Consensus 72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apn 151 (277)
T 3evf_A 72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGES 151 (277)
T ss_dssp SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCccC
Confidence 566779999999999999999887665566666663111100101 1133334444321 233 499999877544
Q ss_pred ---cCChh-HHHHHHHHHHHhccCCCCC-cEEEE
Q 037127 267 ---DWNDE-ECVKILKKCKEAITSNSKI-GKVII 295 (307)
Q Consensus 267 ---~~~~~-~~~~~L~~~~~~L~p~~~g-g~lli 295 (307)
.|.|. ....+|+-+.+.|+| | |.+++
T Consensus 152 sG~~~~D~~rs~~LL~~a~~~Lkp---G~G~FV~ 182 (277)
T 3evf_A 152 SSSSVTEGERTVRVLDTVEKWLAC---GVDNFCV 182 (277)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE
T ss_pred cCchHHHHHHHHHHHHHHHHHhCC---CCCeEEE
Confidence 23333 334578999999999 8 87776
No 274
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=97.95 E-value=5.8e-05 Score=69.03 Aligned_cols=103 Identities=20% Similarity=0.313 Sum_probs=71.2
Q ss_pred CCeEEEecCCchHHHHHH--------HHHC-------CCCeEEEecchH-----HHHhchhcCC-------------C--
Q 037127 197 LNSLVDVGGATGTVAKAI--------AKAF-------PNLECTDFDLPH-----VVNGLESDLA-------------N-- 241 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l--------~~~~-------p~~~~~~~Dl~~-----~~~~a~~~~~-------------r-- 241 (307)
..+|+|+|||+|..+..+ .+++ |.+++..-|+|. +-........ +
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 588999999999887766 3343 788999999953 1111111100 1
Q ss_pred -eEEEecCCCC-CCC--CccEEEechhhccCCh------------------------------------hHHHHHHHHHH
Q 037127 242 -LKYVGGDMFE-AIP--PADAVVLKWILHDWND------------------------------------EECVKILKKCK 281 (307)
Q Consensus 242 -v~~~~~d~~~-~~p--~~D~i~~~~vLh~~~~------------------------------------~~~~~~L~~~~ 281 (307)
+.-+++.|.. .+| .+|+++.+.+||-.++ ++-..+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677776 466 4999999999996552 13345799999
Q ss_pred HhccCCCCCcEEEEEeeecCC
Q 037127 282 EAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 282 ~~L~p~~~gg~lli~e~~~~~ 302 (307)
+.|+| ||++++.=...++
T Consensus 213 ~eL~p---GG~mvl~~~gr~~ 230 (374)
T 3b5i_A 213 AEVKR---GGAMFLVCLGRTS 230 (374)
T ss_dssp HHEEE---EEEEEEEEEECCC
T ss_pred HHhCC---CCEEEEEEecCCC
Confidence 99999 8888877665543
No 275
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=97.87 E-value=1.3e-05 Score=73.90 Aligned_cols=93 Identities=12% Similarity=0.016 Sum_probs=71.8
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCC-CeEEEecc-hHHHHhchh------cCCC-eEEEecCCCC--C--CC-CccEEEe
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPN-LECTDFDL-PHVVNGLES------DLAN-LKYVGGDMFE--A--IP-PADAVVL 261 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~-~~~~~~Dl-~~~~~~a~~------~~~r-v~~~~~d~~~--~--~p-~~D~i~~ 261 (307)
+..+|||++||+|.++..++++.++ .+++++|+ +..++.+++ ..++ ++++.+|.++ . .+ .||+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4678999999999999999998765 57999999 888888876 3455 9999999865 2 23 4999987
Q ss_pred chhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 262 KWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 262 ~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
.= +... ..++..+.+.|++ ||.|++.-
T Consensus 132 DP----~g~~--~~~l~~a~~~Lk~---gGll~~t~ 158 (392)
T 3axs_A 132 DP----FGTP--VPFIESVALSMKR---GGILSLTA 158 (392)
T ss_dssp CC----SSCC--HHHHHHHHHHEEE---EEEEEEEE
T ss_pred CC----CcCH--HHHHHHHHHHhCC---CCEEEEEe
Confidence 54 2211 3689999999998 78666654
No 276
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=97.87 E-value=4.9e-05 Score=67.87 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=54.7
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-----cCCCeEEEecCCCCC---C---CCccEEE
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-----DLANLKYVGGDMFEA---I---PPADAVV 260 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-----~~~rv~~~~~d~~~~---~---p~~D~i~ 260 (307)
.....+|||+|||+|..+..+++.. +..+++++|+ +..++.+++ ...+|+++.+|+.+. . ..||.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4556799999999999999999875 5579999999 777777765 346899999998762 1 2489998
Q ss_pred e
Q 037127 261 L 261 (307)
Q Consensus 261 ~ 261 (307)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 7
No 277
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=97.81 E-value=1.5e-05 Score=69.30 Aligned_cols=107 Identities=15% Similarity=0.111 Sum_probs=67.8
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecch-HHHHhchh---cCCC-eEEEec-CCCCCCC-Cc
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLP-HVVNGLES---DLAN-LKYVGG-DMFEAIP-PA 256 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~-~~~~~a~~---~~~r-v~~~~~-d~~~~~p-~~ 256 (307)
.++.+.+. +....+|||||||+|.|+..+++..+-..++++|+. .....+.. .... +.+... |+..-.+ .+
T Consensus 80 ~ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 157 (282)
T 3gcz_A 80 RWMEERGY--VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPG 157 (282)
T ss_dssp HHHHHTTS--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCc
Confidence 44555553 667779999999999999999987776678888882 21111110 1222 344433 4433122 59
Q ss_pred cEEEechhhc----cCChhHHHHHHHHHHHhccCCCCC--cEEEE
Q 037127 257 DAVVLKWILH----DWNDEECVKILKKCKEAITSNSKI--GKVII 295 (307)
Q Consensus 257 D~i~~~~vLh----~~~~~~~~~~L~~~~~~L~p~~~g--g~lli 295 (307)
|+|++...-+ ..+......+|.-+.+.|+| | |.+++
T Consensus 158 DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~---g~~G~Fv~ 199 (282)
T 3gcz_A 158 DTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQE---GNYTEFCI 199 (282)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHH---HCCCEEEE
T ss_pred CEEEecCccCCCChHHHHHHHHHHHHHHHHHcCC---CCCCcEEE
Confidence 9999887665 11112234578888899998 6 77765
No 278
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.78 E-value=5.5e-05 Score=59.35 Aligned_cols=74 Identities=19% Similarity=0.121 Sum_probs=55.3
Q ss_pred CCCeEEEecCCch-HHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCCCC----CccEEEechhhccCC
Q 037127 196 GLNSLVDVGGATG-TVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEAIP----PADAVVLKWILHDWN 269 (307)
Q Consensus 196 ~~~~vlDvGgG~G-~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~~p----~~D~i~~~~vLh~~~ 269 (307)
...+|||||||+| ..+..|++.. +..++++|+ |..++ ++..|+|++.. +||+|...+ |
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av~----------~v~dDiF~P~~~~Y~~~DLIYsir-----P 98 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHGG----------IVRDDITSPRMEIYRGAALIYSIR-----P 98 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSSTT----------EECCCSSSCCHHHHTTEEEEEEES-----C
T ss_pred CCCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccccc----------eEEccCCCCcccccCCcCEEEEcC-----C
Confidence 4569999999999 5888888742 688999998 44332 89999999754 689986655 4
Q ss_pred hhHHHHHHHHHHHhcc
Q 037127 270 DEECVKILKKCKEAIT 285 (307)
Q Consensus 270 ~~~~~~~L~~~~~~L~ 285 (307)
..|.+..|.++++...
T Consensus 99 P~El~~~i~~lA~~v~ 114 (153)
T 2k4m_A 99 PAEIHSSLMRVADAVG 114 (153)
T ss_dssp CTTTHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 4455677777777764
No 279
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.71 E-value=0.00018 Score=65.21 Aligned_cols=95 Identities=14% Similarity=0.134 Sum_probs=66.1
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchhcCCCeEEEecCCCCCCC---CccEEEechhhccCCh
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLESDLANLKYVGGDMFEAIP---PADAVVLKWILHDWND 270 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~~p---~~D~i~~~~vLh~~~~ 270 (307)
+..+.++||+||++|.++..++++ +.+++++|..++-.... ..++|+++.+|.+...| .+|++++-++.+ .
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~-~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p 282 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLM-DTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---P 282 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHH-TTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---H
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhc-cCCCeEEEeCccccccCCCCCcCEEEEcCCCC---h
Confidence 466889999999999999999998 67999999844433333 46799999999998433 489999987764 2
Q ss_pred hHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 271 EECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 271 ~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
.....++.+....... ++.|+.+.
T Consensus 283 ~~~~~l~~~wl~~~~~---~~aI~~lK 306 (375)
T 4auk_A 283 AKVAALMAQWLVNGWC---RETIFNLK 306 (375)
T ss_dssp HHHHHHHHHHHHTTSC---SEEEEEEE
T ss_pred HHhHHHHHHHHhcccc---ceEEEEEE
Confidence 3334444444333332 34544443
No 280
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.67 E-value=0.00013 Score=63.78 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=59.7
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCC-C-----C-
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFE-A-----I- 253 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~-~-----~- 253 (307)
.++++..+. ..+...+||.+||.|.++..|+++ +.+++++|. |.+++.+++ ..+|++++.+||.+ + .
T Consensus 11 l~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~g 86 (285)
T 1wg8_A 11 YQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALG 86 (285)
T ss_dssp HHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTT
T ss_pred HHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHcC
Confidence 456666665 556779999999999999999998 679999999 888888876 22699999999976 1 1
Q ss_pred -CCccEEEe
Q 037127 254 -PPADAVVL 261 (307)
Q Consensus 254 -p~~D~i~~ 261 (307)
..+|.|++
T Consensus 87 ~~~vDgIL~ 95 (285)
T 1wg8_A 87 VERVDGILA 95 (285)
T ss_dssp CSCEEEEEE
T ss_pred CCCcCEEEe
Confidence 24788875
No 281
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.62 E-value=6.2e-05 Score=72.36 Aligned_cols=99 Identities=15% Similarity=0.107 Sum_probs=69.7
Q ss_pred CCeEEEecCCchHHHHHHHHHCC---------------CCeEEEecc-hHHHHhchh------cCCCeEEEecCCCC-C-
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFP---------------NLECTDFDL-PHVVNGLES------DLANLKYVGGDMFE-A- 252 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p---------------~~~~~~~Dl-~~~~~~a~~------~~~rv~~~~~d~~~-~- 252 (307)
..+|+|.+||+|.++..+++..+ ..+++|+|+ +.++..|+. ...++.+.++|.+. +
T Consensus 245 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~ 324 (544)
T 3khk_A 245 KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ 324 (544)
T ss_dssp SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS
T ss_pred CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc
Confidence 34999999999999988865432 468999999 777777765 23345558899876 3
Q ss_pred CC--CccEEEechhhc--cCChh-------------------------HHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 253 IP--PADAVVLKWILH--DWNDE-------------------------ECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 253 ~p--~~D~i~~~~vLh--~~~~~-------------------------~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
.+ .||+|++.=... .|..+ ....+++++.+.|+| ||++.++-+
T Consensus 325 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~aiVlP 396 (544)
T 3khk_A 325 HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP---TGSMALLLA 396 (544)
T ss_dssp CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc---CceEEEEec
Confidence 22 499998853332 23211 113689999999999 899877743
No 282
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=97.57 E-value=0.00013 Score=66.52 Aligned_cols=98 Identities=16% Similarity=0.070 Sum_probs=72.3
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-c------------CCCeEEEecCCCCC-------C
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-D------------LANLKYVGGDMFEA-------I 253 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-~------------~~rv~~~~~d~~~~-------~ 253 (307)
.++++||=||+|.|..+.++++. |..+++.+|+ |.|++.+++ . .+|++++.+|.++- .
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 34689999999999999999985 5578999999 889998876 1 25799999998751 1
Q ss_pred CCccEEEechhhcc-------CCh-hHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 254 PPADAVVLKWILHD-------WND-EECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 254 p~~D~i~~~~vLh~-------~~~-~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
..||+|+.--.-.. ... .-...+++.++++|+| ||.++..
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p---~GVlv~Q 330 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFTQ 330 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCC---CCEEEEe
Confidence 25999987632111 011 1135789999999999 7776653
No 283
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=97.57 E-value=0.00025 Score=64.94 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=69.0
Q ss_pred CCeEEEecCCchHHHHHHHHH-----------------CCCCeEEEecch-----------H-HHHhchh-c--CCCeEE
Q 037127 197 LNSLVDVGGATGTVAKAIAKA-----------------FPNLECTDFDLP-----------H-VVNGLES-D--LANLKY 244 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~-----------------~p~~~~~~~Dl~-----------~-~~~~a~~-~--~~rv~~ 244 (307)
..+|+|+||++|..+..++.. .|.++++.-|+| + ..+.+++ . ..+-.|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 678999999999888877665 578899999997 1 1111111 1 123344
Q ss_pred E---ecCCCC-CCC--CccEEEechhhccCChh-------------------------HH------------HHHHHHHH
Q 037127 245 V---GGDMFE-AIP--PADAVVLKWILHDWNDE-------------------------EC------------VKILKKCK 281 (307)
Q Consensus 245 ~---~~d~~~-~~p--~~D~i~~~~vLh~~~~~-------------------------~~------------~~~L~~~~ 281 (307)
+ ++.|+. .+| .+|+++.+.+||-.++. .+ ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 456665 466 49999999999943321 11 23488889
Q ss_pred HhccCCCCCcEEEEEeeecCC
Q 037127 282 EAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 282 ~~L~p~~~gg~lli~e~~~~~ 302 (307)
+.|+| ||++++.-...+.
T Consensus 213 ~eL~p---GG~mvl~~~gr~~ 230 (384)
T 2efj_A 213 EELIS---RGRMLLTFICKED 230 (384)
T ss_dssp HHEEE---EEEEEEEEECCCT
T ss_pred HHhcc---CCeEEEEEecCCC
Confidence 99999 8888877665544
No 284
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.55 E-value=0.00012 Score=63.55 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=50.6
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----------c--C-CCeEEEecCCCC---CCC-CccE
Q 037127 198 NSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----------D--L-ANLKYVGGDMFE---AIP-PADA 258 (307)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------~--~-~rv~~~~~d~~~---~~p-~~D~ 258 (307)
.+|||+|||+|..+..++++ +.+++++|. +.+++.+++ . . +|++++++|..+ ..+ .||+
T Consensus 90 ~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDv 167 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred CEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCE
Confidence 78999999999999999998 568999999 544333322 1 1 689999999865 233 5999
Q ss_pred EEechhhc
Q 037127 259 VVLKWILH 266 (307)
Q Consensus 259 i~~~~vLh 266 (307)
|++.-..+
T Consensus 168 V~lDP~y~ 175 (258)
T 2oyr_A 168 VYLDPMFP 175 (258)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 98865544
No 285
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=97.53 E-value=5.2e-05 Score=70.08 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=53.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh----c--C-CCeEEEecCCCCC--C---CCccEEEec
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES----D--L-ANLKYVGGDMFEA--I---PPADAVVLK 262 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~----~--~-~rv~~~~~d~~~~--~---p~~D~i~~~ 262 (307)
...+|||+|||+|..+..+++. ..+++++|. +.+++.++. . . ++++++++|+.+. . ..||+|++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 3679999999999999999887 468999999 888888876 2 2 5799999999873 2 259999883
No 286
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.51 E-value=0.00042 Score=68.73 Aligned_cols=100 Identities=13% Similarity=0.076 Sum_probs=69.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCC---CCeEEEecc-hHHHHhc--hh---------cCCCeEEEecCCCCC----CCCc
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFP---NLECTDFDL-PHVVNGL--ES---------DLANLKYVGGDMFEA----IPPA 256 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p---~~~~~~~Dl-~~~~~~a--~~---------~~~rv~~~~~d~~~~----~p~~ 256 (307)
...+|+|.|||+|.++..+++..+ ..+++++|+ +.+++.| +. ..+...+...|++.+ ...|
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF 400 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV 400 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence 467999999999999999999876 357999999 7777766 32 112246667777762 2259
Q ss_pred cEEEechhhcc-CChh--------------------------HHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 257 DAVVLKWILHD-WNDE--------------------------ECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 257 D~i~~~~vLh~-~~~~--------------------------~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
|+|++.=..-. +..+ -...+++++.+.|++ ||++.++-+
T Consensus 401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKp---GGrLAfIlP 466 (878)
T 3s1s_A 401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQD---GTVISAIMP 466 (878)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCT---TCEEEEEEE
T ss_pred CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCC---CcEEEEEEC
Confidence 99987543311 1111 123578899999998 899887654
No 287
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=97.40 E-value=0.00053 Score=62.21 Aligned_cols=105 Identities=17% Similarity=0.217 Sum_probs=70.1
Q ss_pred cCCCeEEEecCCchHHHHHHH--------H--------HCCCCeEEEecchH-HHH-hchhcC-----CCeEE---EecC
Q 037127 195 EGLNSLVDVGGATGTVAKAIA--------K--------AFPNLECTDFDLPH-VVN-GLESDL-----ANLKY---VGGD 248 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~--------~--------~~p~~~~~~~Dl~~-~~~-~a~~~~-----~rv~~---~~~d 248 (307)
++..+|+|+||++|..+..+. + ..|..+++.-|+|. .-. ..+.+. .+-.| +++.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 445789999999996654332 2 25778899999953 122 222211 13333 5567
Q ss_pred CCC-CCC--CccEEEechhhccCCh-------------------------------hHHHHHHHHHHHhccCCCCCcEEE
Q 037127 249 MFE-AIP--PADAVVLKWILHDWND-------------------------------EECVKILKKCKEAITSNSKIGKVI 294 (307)
Q Consensus 249 ~~~-~~p--~~D~i~~~~vLh~~~~-------------------------------~~~~~~L~~~~~~L~p~~~gg~ll 294 (307)
|+. .+| .+|+++.+..||-.++ ++-..+|+..++.|+| ||+++
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p---GG~mv 206 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMV 206 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CceEE
Confidence 776 566 4999999999994332 1234579999999999 99998
Q ss_pred EEeeecCC
Q 037127 295 IIDMMREN 302 (307)
Q Consensus 295 i~e~~~~~ 302 (307)
+.=...++
T Consensus 207 l~~~gr~~ 214 (359)
T 1m6e_X 207 LTILGRRS 214 (359)
T ss_dssp EEEEECSS
T ss_pred EEEecCCC
Confidence 87665544
No 288
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=97.38 E-value=0.00021 Score=62.49 Aligned_cols=100 Identities=11% Similarity=0.088 Sum_probs=63.9
Q ss_pred cccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchH-HHHhch--h--cCCCeEEEec-CCCCCCC-CccEEEechhh
Q 037127 193 VFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPH-VVNGLE--S--DLANLKYVGG-DMFEAIP-PADAVVLKWIL 265 (307)
Q Consensus 193 ~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~-~~~~a~--~--~~~rv~~~~~-d~~~~~p-~~D~i~~~~vL 265 (307)
.+.+..+||||||++|.|+..+++..+-..++++|+.. ...... . ..+-+.+..+ |++.-.+ .+|++++...-
T Consensus 78 l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~AP 157 (300)
T 3eld_A 78 YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGE 157 (300)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCC
T ss_pred CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCcC
Confidence 35678899999999999999999876666788888832 110100 0 1123445444 5554222 59999886554
Q ss_pred c----cCChhHHHHHHHHHHHhccCCCCC-cEEEE
Q 037127 266 H----DWNDEECVKILKKCKEAITSNSKI-GKVII 295 (307)
Q Consensus 266 h----~~~~~~~~~~L~~~~~~L~p~~~g-g~lli 295 (307)
+ ..+......+|.-+.+.|+| | |.+++
T Consensus 158 nsG~~~~D~~rs~~LL~~A~~~Lkp---G~G~FV~ 189 (300)
T 3eld_A 158 SSSNPLVERDRTMKVLENFERWKHV---NTENFCV 189 (300)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHCCT---TCCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcC---CCCcEEE
Confidence 4 11111235678888899998 8 87775
No 289
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.35 E-value=0.00063 Score=65.26 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=72.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHC---CCCeEEEecc-hHHHHhchh-----cC--CCeEEEecCCCCC-CC-----CccE
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAF---PNLECTDFDL-PHVVNGLES-----DL--ANLKYVGGDMFEA-IP-----PADA 258 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~---p~~~~~~~Dl-~~~~~~a~~-----~~--~rv~~~~~d~~~~-~p-----~~D~ 258 (307)
...+|+|.+||+|.++..+++.. +..+++|+|+ +.+...|+. .. +++.+.++|.+.. .| .||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 45799999999999999998885 3578999999 777777764 12 5688999999873 22 4999
Q ss_pred EEechhhc-cCC------------------h--hHHHHHHHHHHHhcc-CCCCCcEEEEEee
Q 037127 259 VVLKWILH-DWN------------------D--EECVKILKKCKEAIT-SNSKIGKVIIIDM 298 (307)
Q Consensus 259 i~~~~vLh-~~~------------------~--~~~~~~L~~~~~~L~-p~~~gg~lli~e~ 298 (307)
|+..=... .|. . .....+++++.+.|+ + ||++.++-+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~---gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQD---NGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTT---TCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCC---ceeEEEEec
Confidence 98652211 121 1 011358999999999 8 899877644
No 290
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.34 E-value=0.0017 Score=54.07 Aligned_cols=93 Identities=14% Similarity=0.099 Sum_probs=64.3
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh------c--CCCeEEEecCCCCC------------
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES------D--LANLKYVGGDMFEA------------ 252 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~------~--~~rv~~~~~d~~~~------------ 252 (307)
..+.++||++||| +.+..+++ .++.+++.+|. +...+.+++ . .++|+++.+|..+-
T Consensus 28 l~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~ 104 (202)
T 3cvo_A 28 YEEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKW 104 (202)
T ss_dssp HHHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred hhCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhh
Confidence 3457799999984 66667776 45789999998 777777765 3 67899999996431
Q ss_pred ------------C---CCccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeec
Q 037127 253 ------------I---PPADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMR 300 (307)
Q Consensus 253 ------------~---p~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~ 300 (307)
. ..||+|++--- . ....+..+.+.|+| ||.| |+|.+.
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~------k-~~~~~~~~l~~l~~---GG~I-v~DNv~ 156 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLVDGR------F-RVGCALATAFSITR---PVTL-LFDDYS 156 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEECSS------S-HHHHHHHHHHHCSS---CEEE-EETTGG
T ss_pred hhHHHHhhhhhccccCCCCCEEEEeCC------C-chhHHHHHHHhcCC---CeEE-EEeCCc
Confidence 1 24899988752 1 12445556688998 6655 666643
No 291
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=97.27 E-value=0.0036 Score=55.69 Aligned_cols=103 Identities=14% Similarity=0.109 Sum_probs=78.7
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHhchh--------cCCCeEEEecCCCCCC----------C-C
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNGLES--------DLANLKYVGGDMFEAI----------P-P 255 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~a~~--------~~~rv~~~~~d~~~~~----------p-~ 255 (307)
.+...||+||||-=.....+.. .++++++-+|.|.+++..++ ..++..+++.|+.+.. + .
T Consensus 101 ~g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~ 179 (310)
T 2uyo_A 101 DGIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 179 (310)
T ss_dssp TTCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred hCCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCC
Confidence 3456899999997776555542 12478999999999887766 2568999999998621 1 2
Q ss_pred ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 256 ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 256 ~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
.-++++-.+||++++++...+|+.+.+.+.| |..+++|.+.++
T Consensus 180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~----gs~l~~d~~~~~ 222 (310)
T 2uyo_A 180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAV----GSRIAVETSPLH 222 (310)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCT----TCEEEEECCCTT
T ss_pred CEEEEEechHhhCCHHHHHHHHHHHHHhCCC----CeEEEEEecCCC
Confidence 5678888899999999999999999999887 556677776554
No 292
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=97.25 E-value=0.00022 Score=61.92 Aligned_cols=93 Identities=22% Similarity=0.254 Sum_probs=63.8
Q ss_pred CCCeEEEecCCchHHHHHHHHH-------CCC-----CeEEEecc-h---HHHH-----------hchh-----------
Q 037127 196 GLNSLVDVGGATGTVAKAIAKA-------FPN-----LECTDFDL-P---HVVN-----------GLES----------- 237 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~-------~p~-----~~~~~~Dl-~---~~~~-----------~a~~----------- 237 (307)
+..+|||||+|+|..+..+++. .|+ ++++.++. | +.+. .+++
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4578999999999988887665 674 68899997 4 2222 2221
Q ss_pred --------cCCCeEEEecCCCC---CCC-----CccEEEechhh----cc-CChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127 238 --------DLANLKYVGGDMFE---AIP-----PADAVVLKWIL----HD-WNDEECVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 238 --------~~~rv~~~~~d~~~---~~p-----~~D~i~~~~vL----h~-~~~~~~~~~L~~~~~~L~p~~~gg~lli 295 (307)
...+++++.+|+.+ ..+ .||+|++--.- +. |. ..+|+.+++.|+| ||+++.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~----~~~l~~l~~~L~p---GG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWT----QNLFNAMARLARP---GGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCC----HHHHHHHHHHEEE---EEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcC----HHHHHHHHHHcCC---CcEEEE
Confidence 01357789999866 222 48999885311 11 33 4789999999999 888775
No 293
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.14 E-value=0.00021 Score=48.55 Aligned_cols=55 Identities=13% Similarity=0.265 Sum_probs=44.5
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecC
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLT 104 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t 104 (307)
+..|++.|...+.++|..|||+.+|+ +...+.+.+..|...|++.... .+.|+++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lgl---sr~tv~~~l~~L~~~G~I~~~~----------~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQV---PKKTLNQVLYRLKKEDRVSSPS----------PKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEEEE----------TTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEecCC----------CceEeeC
Confidence 33466666654468999999999999 6899999999999999988754 5788764
No 294
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=97.11 E-value=0.00025 Score=53.19 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=52.6
Q ss_pred hCCcccccccCCCCCCHHHHHHHc--CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcC
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSAL--TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKD 113 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~--g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~ 113 (307)
+..|++.|..+ ++.|+.+||+.+ ++ ....+++.|+.|...|+++..+ .+.|++|+.++.+...
T Consensus 15 d~~IL~~L~~~-g~~s~~eLA~~l~~gi---S~~aVs~rL~~Le~~GLV~~~~----------rg~Y~LT~~G~~~l~~ 79 (111)
T 3b73_A 15 DDRILEIIHEE-GNGSPKELEDRDEIRI---SKSSVSRRLKKLADHDLLQPLA----------NGVYVITEEGEAYLNG 79 (111)
T ss_dssp HHHHHHHHHHH-SCBCHHHHHTSTTCCS---CHHHHHHHHHHHHHTTSEEECS----------TTCEEECHHHHHHHTT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEecC----------CceEEECchHHHHHHH
Confidence 34566777654 799999999999 99 6799999999999999999875 4699999999866544
No 295
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=97.00 E-value=0.00076 Score=57.04 Aligned_cols=101 Identities=14% Similarity=0.119 Sum_probs=65.3
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHHHHh----chh-cCCCeEEEec-CCCCCCC-Cc
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHVVNG----LES-DLANLKYVGG-DMFEAIP-PA 256 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~~~~----a~~-~~~rv~~~~~-d~~~~~p-~~ 256 (307)
.++.+.+. +....+||||||++|.++...+......+++++|+-..-.. .+. ..+-|+|+.+ |++.-.| .+
T Consensus 68 ~ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~ 145 (267)
T 3p8z_A 68 QWFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKC 145 (267)
T ss_dssp HHHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccc
Confidence 45566664 66777999999999999998888776668999999222111 111 4577999999 9765222 48
Q ss_pred cEEEechhhccCC-hhHHHH---HHHHHHHhccC
Q 037127 257 DAVVLKWILHDWN-DEECVK---ILKKCKEAITS 286 (307)
Q Consensus 257 D~i~~~~vLh~~~-~~~~~~---~L~~~~~~L~p 286 (307)
|.++|-.-=..=+ .-|..+ .|.-+.+.|++
T Consensus 146 DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~ 179 (267)
T 3p8z_A 146 DTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN 179 (267)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS
T ss_pred cEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc
Confidence 9888765432111 113333 44545566775
No 296
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.97 E-value=0.00047 Score=50.16 Aligned_cols=63 Identities=14% Similarity=0.267 Sum_probs=52.4
Q ss_pred HHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcch
Q 037127 30 MSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKL 109 (307)
Q Consensus 30 ~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~ 109 (307)
.++..-.++.|+..| . ++.|+.|||+.+|+ +...+.+.|+.|...|++.+.. +.|++++.++.
T Consensus 26 ~~l~~~~r~~Il~~L-~--~~~~~~eLa~~l~i---s~~tv~~~L~~L~~~Glv~~~~-----------g~y~l~~~g~~ 88 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-D--KGRSEEEIMQTLSL---SKKQLDYHLKVLEAGFCIERVG-----------ERWVVTDAGKI 88 (96)
T ss_dssp HHHSCHHHHHHHHHH-H--TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-----------TEEEECTTTCC
T ss_pred HHhCCHHHHHHHHHH-c--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEC-----------CEEEECCCchH
Confidence 444455567788888 5 78999999999999 6789999999999999999873 58999987653
No 297
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=96.93 E-value=0.0018 Score=55.57 Aligned_cols=105 Identities=15% Similarity=0.104 Sum_probs=61.7
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHH--CCC--CeEEEecchHHHHhchhcCCCe---EEEec-CCCCCCC-
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKA--FPN--LECTDFDLPHVVNGLESDLANL---KYVGG-DMFEAIP- 254 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~--~p~--~~~~~~Dl~~~~~~a~~~~~rv---~~~~~-d~~~~~p- 254 (307)
.++.+.+ .+.+..+|||+||+.|.++...++. ... -.+++.|+ +..+... ....+ .|+.+ |+++..+
T Consensus 63 ~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~-~~~Gv~~i~~~~G~Df~~~~~~ 138 (269)
T 2px2_A 63 RWLVERR--FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLM-QSYGWNIVTMKSGVDVFYKPSE 138 (269)
T ss_dssp HHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCC-CSTTGGGEEEECSCCGGGSCCC
T ss_pred HHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcc-cCCCceEEEeeccCCccCCCCC
Confidence 4555554 3778899999999999999999885 211 12244442 1110100 11344 66667 9998444
Q ss_pred CccEEEechhhc---cCChhH-HHHHHHHHHHhccCCCCCc-EEEE
Q 037127 255 PADAVVLKWILH---DWNDEE-CVKILKKCKEAITSNSKIG-KVII 295 (307)
Q Consensus 255 ~~D~i~~~~vLh---~~~~~~-~~~~L~~~~~~L~p~~~gg-~lli 295 (307)
.+|+|++-..=. ...|.. ....|.-+.+.|+| || .+++
T Consensus 139 ~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~---gG~~Fvv 181 (269)
T 2px2_A 139 ISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSR---GPKEFCI 181 (269)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE
T ss_pred CCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhc---CCcEEEE
Confidence 599998766321 111211 22346666688998 77 6655
No 298
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.87 E-value=0.00063 Score=47.63 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=48.4
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcc-cHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTR-CVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~-~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
+-.|++.|... ||.|+.+||+.+|+ ... .+++.|..|...|++++.+. +...|.+|+.++
T Consensus 13 ~~~IL~~Lk~~-g~~ta~eiA~~Lgi---t~~~aVr~hL~~Le~eGlV~~~~~--------gRP~w~LT~~g~ 73 (79)
T 1xmk_A 13 KEKICDYLFNV-SDSSALNLAKNIGL---TKARDINAVLIDMERQGDVYRQGT--------TPPIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHT-CCEEHHHHHHHHCG---GGHHHHHHHHHHHHHTTSEEEECS--------SSCEEEECHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHcCC---CcHHHHHHHHHHHHHCCCEEecCC--------CCCCeEeCHhHH
Confidence 33455666665 79999999999999 466 99999999999999997752 234899999886
No 299
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=96.84 E-value=0.0024 Score=57.05 Aligned_cols=67 Identities=10% Similarity=0.095 Sum_probs=56.0
Q ss_pred HHHHHHhccccccCCCeEEEecCCchHHHHHHHHHC-CCCeEEEecc-hHHHHhchh-cCCCeEEEecCCCC
Q 037127 183 TRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-PNLECTDFDL-PHVVNGLES-DLANLKYVGGDMFE 251 (307)
Q Consensus 183 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-p~~~~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~ 251 (307)
.++++..+. ..+...+||..+|.|.++..|++.. |+.+++++|. |.+++.++. ..+|++++.++|.+
T Consensus 46 l~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 46 LDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp THHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred HHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 466777666 5667899999999999999999985 7889999999 888888755 46799999998866
No 300
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=96.76 E-value=0.0036 Score=54.67 Aligned_cols=106 Identities=13% Similarity=0.150 Sum_probs=67.5
Q ss_pred HHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecchHH-HH---hchh-cCCCeEEEec-CCCCCC-CCc
Q 037127 184 RVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDLPHV-VN---GLES-DLANLKYVGG-DMFEAI-PPA 256 (307)
Q Consensus 184 ~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl~~~-~~---~a~~-~~~rv~~~~~-d~~~~~-p~~ 256 (307)
.++.+.+. +....+||||||++|.++...+....-.+++++|+-.. -+ ..++ ...-|.|+.+ |++.-. ..+
T Consensus 84 ~ei~~~~~--l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~ 161 (321)
T 3lkz_A 84 RWLVERRF--LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC 161 (321)
T ss_dssp HHHHHTTS--CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence 44555544 56677999999999999998887776567999999221 00 0111 1234899998 976622 248
Q ss_pred cEEEechhhccCChh--HH---HHHHHHHHHhccCCCCC-cEEEE
Q 037127 257 DAVVLKWILHDWNDE--EC---VKILKKCKEAITSNSKI-GKVII 295 (307)
Q Consensus 257 D~i~~~~vLh~~~~~--~~---~~~L~~~~~~L~p~~~g-g~lli 295 (307)
|+++|--- .--+.. |. .+.|.-+.+.|++ + |-++|
T Consensus 162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~---~~~~f~~ 202 (321)
T 3lkz_A 162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHR---GPREFCV 202 (321)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTT---CCCEEEE
T ss_pred CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhcc---CCCcEEE
Confidence 98887665 322322 22 3355555678876 4 55554
No 301
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=96.72 E-value=0.00067 Score=59.40 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=47.4
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
+.|+++|...+++.|+.|||+++|+ +...+.|+|..|...||+++++ +++|++++...
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl---~ksTv~RlL~tL~~~G~v~~~~----------~~~Y~LG~~~~ 90 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDL---PKSSAHGLLAVMTELDLLARSA----------DGTLRIGPHSL 90 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC---C--CHHHHHHHHHHTTSEEECT----------TSEEEECTHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC----------CCcEEehHHHH
Confidence 4567777765568999999999999 5789999999999999999985 47899998543
No 302
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.71 E-value=0.0014 Score=48.11 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChh
Q 037127 29 SMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNA 106 (307)
Q Consensus 29 ~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~ 106 (307)
+.+|..-.++.|+..|.. ++.|+.|||+.+|+ +...+.+.|+.|...|++..... +....|++++.
T Consensus 17 ~~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~~-------g~~~~y~l~~~ 82 (102)
T 3pqk_A 17 LKTLSHPVRLMLVCTLVE--GEFSVGELEQQIGI---GQPTLSQQLGVLRESGIVETRRN-------IKQIFYRLTEA 82 (102)
T ss_dssp HHHHCSHHHHHHHHHHHT--CCBCHHHHHHHHTC---CTTHHHHHHHHHHHTTSEEEECS-------SSCCEEEECSS
T ss_pred HHHcCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe-------CCEEEEEECcH
Confidence 344444556666777754 78999999999999 57899999999999999998762 12346887764
No 303
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=96.61 E-value=0.054 Score=48.51 Aligned_cols=103 Identities=14% Similarity=0.203 Sum_probs=81.1
Q ss_pred CCCeEEEecCCchHHHHHHHHH-CCCCeEEEecchHHHHhchh----------------------------cCCCeEEEe
Q 037127 196 GLNSLVDVGGATGTVAKAIAKA-FPNLECTDFDLPHVVNGLES----------------------------DLANLKYVG 246 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~-~p~~~~~~~Dl~~~~~~a~~----------------------------~~~rv~~~~ 246 (307)
+...||-+|||-=...-.+... .++++++=+|.|++++.=++ ..++..+++
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4678999999988888888765 36788999999988764111 157899999
Q ss_pred cCCCCC-----------CC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCC
Q 037127 247 GDMFEA-----------IP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMREN 302 (307)
Q Consensus 247 ~d~~~~-----------~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~ 302 (307)
.|+.+. ++ ..-++++=-+|.+++.+++..+|+.+.+..++ |.+++.|++.++
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~----~~~i~yE~i~p~ 234 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFER----AMFINYEQVNMG 234 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCTT
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC----ceEEEEeccCCC
Confidence 999861 12 25677888899999999999999999998875 788889998654
No 304
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.58 E-value=0.002 Score=46.77 Aligned_cols=66 Identities=12% Similarity=0.223 Sum_probs=52.5
Q ss_pred HHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChh
Q 037127 29 SMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNA 106 (307)
Q Consensus 29 ~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~ 106 (307)
..+|....++.|+..|.. ++.|+.|||+.+|+ +...+.+.|+.|...|++..... +....|++++.
T Consensus 17 ~~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~~-------g~~~~y~l~~~ 82 (98)
T 3jth_A 17 LKAMANERRLQILCMLHN--QELSVGELCAKLQL---SQSALSQHLAWLRRDGLVTTRKE-------AQTVYYTLKSE 82 (98)
T ss_dssp HHHHCSHHHHHHHHHTTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECC-------TTCCEEEECCH
T ss_pred HHHcCCHHHHHHHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe-------CCEEEEEECHH
Confidence 445555667778888875 79999999999999 67999999999999999998762 12345887764
No 305
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=96.53 E-value=0.0042 Score=48.09 Aligned_cols=95 Identities=17% Similarity=0.209 Sum_probs=59.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH-----HHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCce
Q 037127 9 DTELLEAQAHVWNHIFNFINSMSLK-----CAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFF 83 (307)
Q Consensus 9 ~~~~~~~~~~l~~~~~g~~~~~~L~-----~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l 83 (307)
++++......+...+...+....-. +..++.++..|... ++.|..+||+.+++ +...+.++++.|...|++
T Consensus 6 ~~~l~~~l~~~~~~~~~~~~~~l~~~~~~lt~~~~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv 81 (142)
T 3ech_A 6 NPDLMPALMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQ-RGLNLQDLGRQMCR---DKALITRKIRELEGRNLV 81 (142)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHT-TTCCHHHHHHHHC------CHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCE
Confidence 4455555555555555443332222 24466677777765 68999999999999 678999999999999999
Q ss_pred eeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 84 AQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 84 ~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++..... +.-.-.+.+|+.|+.+.
T Consensus 82 ~r~~~~~----DrR~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 82 RRERNPS----DQRSFQLFLTDEGLAIH 105 (142)
T ss_dssp EC--------------CCEECHHHHHHH
T ss_pred eeccCCC----CCCeeeeEECHHHHHHH
Confidence 9875210 00012478999888655
No 306
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=96.48 E-value=0.0011 Score=57.40 Aligned_cols=59 Identities=27% Similarity=0.323 Sum_probs=49.1
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
+.|+++|...+++.|+.|||+++|+ +...+.|+|..|...||+++++. .++|++++..-
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl---~ksT~~RlL~tL~~~G~v~~~~~---------~~~Y~lG~~~~ 67 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGM---NKATVYRLMSELQEAGFVEQVEG---------ARSYRLGPQVL 67 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEECSS---------SSEEEECTTHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC---------CCcEEcCHHHH
Confidence 3467777754478999999999999 67999999999999999999852 48999997543
No 307
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.40 E-value=0.0022 Score=47.80 Aligned_cols=63 Identities=13% Similarity=0.194 Sum_probs=48.6
Q ss_pred HHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 34 CAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 34 ~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
...++.|+..|.. ++.|+.+||+.+|+ +...+.+.|+.|...|++..... +....|.+|+.+.
T Consensus 20 ~~~r~~IL~~L~~--~~~~~~ela~~l~i---s~~tv~~~l~~L~~~gli~~~~~-------gr~~~y~l~~~~~ 82 (114)
T 2oqg_A 20 DETRWEILTELGR--ADQSASSLATRLPV---SRQAIAKHLNALQACGLVESVKV-------GREIRYRALGAEL 82 (114)
T ss_dssp CHHHHHHHHHHHH--SCBCHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEEE-------TTEEEEEECSHHH
T ss_pred ChHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeEEec-------CCEEEEEechHHH
Confidence 3445566666743 78999999999999 67999999999999999998752 1123488888765
No 308
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.38 E-value=0.0015 Score=49.70 Aligned_cols=69 Identities=12% Similarity=0.101 Sum_probs=52.2
Q ss_pred HHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127 28 NSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS 107 (307)
Q Consensus 28 ~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s 107 (307)
.+.+|....++.|+..|... ++.|+.|||+.+|+ +...+.+.|+.|...|++..... +....|++++.+
T Consensus 35 ~~~al~~~~rl~IL~~L~~~-~~~s~~eLa~~l~i---s~stvs~~L~~L~~~Glv~~~~~-------gr~~~y~l~~~~ 103 (122)
T 1u2w_A 35 ILKAIADENRAKITYALCQD-EELCVCDIANILGV---TIANASHHLRTLYKQGVVNFRKE-------GKLALYSLGDEH 103 (122)
T ss_dssp HHHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-----------CCEEEESCHH
T ss_pred HHHHhCCHHHHHHHHHHHHC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEE-------CCEEEEEECHHH
Confidence 34555555677888888743 78999999999999 68999999999999999998752 112358887643
No 309
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=96.30 E-value=0.0017 Score=48.55 Aligned_cols=71 Identities=20% Similarity=0.285 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcccccccCCCCCC--HHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCC
Q 037127 19 VWNHIFNFINSMSLKCAVELSIPDIINKHGKPTT--LNDLVSAL-TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNN 95 (307)
Q Consensus 19 l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t--~~eLA~~~-g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~ 95 (307)
+++.+.+.+...+|. .|.. ++.+ +.||++.+ |+ ....+.+.|+.|...|++++...
T Consensus 20 ~l~~l~~~wrl~IL~---------~L~~--g~~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~------- 78 (111)
T 3df8_A 20 VLHLLGKKYTMLIIS---------VLGN--GSTRQNFNDIRSSIPGI---SSTILSRRIKDLIDSGLVERRSG------- 78 (111)
T ss_dssp THHHHHSTTHHHHHH---------HHTS--SSSCBCHHHHHHTSTTC---CHHHHHHHHHHHHHTTSEEEEES-------
T ss_pred HHHHHcCccHHHHHH---------HHhc--CCCCCCHHHHHHHccCC---CHHHHHHHHHHHHHCCCEEEeec-------
Confidence 444444555444443 4443 6777 99999999 99 68999999999999999999751
Q ss_pred CCCCeeecChhcchhh
Q 037127 96 DEEQGYVLTNASKLLL 111 (307)
Q Consensus 96 ~~~~~y~~t~~s~~l~ 111 (307)
-...|++|+.|+.+.
T Consensus 79 -r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 79 -QITTYALTEKGMNVR 93 (111)
T ss_dssp -SSEEEEECHHHHHHH
T ss_pred -CcEEEEECccHHHHH
Confidence 135799999998665
No 310
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=96.29 E-value=0.0094 Score=53.90 Aligned_cols=55 Identities=9% Similarity=0.115 Sum_probs=45.4
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh--cCCCeEEEecCCCC
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES--DLANLKYVGGDMFE 251 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~--~~~rv~~~~~d~~~ 251 (307)
...|||||.|.|.++..|+++...-+++++++ +..++..++ ..++++++.+|+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 47899999999999999998754457999999 666666665 35789999999975
No 311
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.27 E-value=0.002 Score=46.58 Aligned_cols=67 Identities=12% Similarity=0.154 Sum_probs=50.5
Q ss_pred HHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 31 SLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 31 ~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
++..-.++.|+..|.. +++.|+.|||+.+|+ +...+.+.|+.|...|++..... +....|.+++.+.
T Consensus 20 ~l~~~~~~~il~~l~~-~~~~s~~ela~~l~i---s~~tvs~~l~~L~~~glv~~~~~-------~r~~~y~l~~~~~ 86 (99)
T 3cuo_A 20 AMSHPKRLLILCMLSG-SPGTSAGELTRITGL---SASATSQHLARMRDEGLIDSQRD-------AQRILYSIKNEAV 86 (99)
T ss_dssp HHCSHHHHHHHHHHTT-CCSEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEEC-------SSCEEEEECCHHH
T ss_pred HhCChHHHHHHHHHHh-CCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEec-------CCEEEEEEChHHH
Confidence 3344456667777765 368999999999999 67899999999999999998752 1133578876543
No 312
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.27 E-value=0.0014 Score=49.65 Aligned_cols=68 Identities=10% Similarity=0.207 Sum_probs=52.9
Q ss_pred HHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 29 SMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 29 ~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
+.+|..-.++.|+..|.. ++.|+.|||+.+|+ +...+.+.|+.|...|++..... +....|++++.+.
T Consensus 12 ~~al~~~~R~~Il~~L~~--~~~~~~eLa~~l~i---s~~tvs~hL~~L~~~GlV~~~~~-------gr~~~y~l~~~~~ 79 (118)
T 3f6o_A 12 FQALADPTRRAVLGRLSR--GPATVSELAKPFDM---ALPSFMKHIHFLEDSGWIRTHKQ-------GRVRTCAIEKEPF 79 (118)
T ss_dssp HHHHTSHHHHHHHHHHHT--CCEEHHHHHTTCCS---CHHHHHHHHHHHHHTTSEEEEEE-------TTEEEEEECSHHH
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEec-------CCEEEEEECHHHH
Confidence 445555567777777764 79999999999999 67999999999999999988763 1134688887654
No 313
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=96.17 E-value=0.0019 Score=55.35 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=48.5
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchh
Q 037127 39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLL 110 (307)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l 110 (307)
.|++.|...+++.|+.|||+.+|+ +...+.|+|..|...||+++.+. .++|++++....+
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~~---------~~~Y~lg~~~~~l 69 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGL---PRSTVQRIINALEEEFLVEALGP---------AGGFRLGPALGQL 69 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTS---CHHHHHHHHHHHHTTTSEEECGG---------GCEEEECSHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC---------CCeEEECHHHHHH
Confidence 355666554458999999999999 67999999999999999999752 4789999865444
No 314
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=96.15 E-value=0.0033 Score=54.40 Aligned_cols=58 Identities=14% Similarity=0.298 Sum_probs=47.3
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
+.|++.|...+++.|+.|||+.+|+ +...+.|+|..|...||+++.+ +++|++++...
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl---~kstv~r~l~tL~~~G~v~~~~----------~~~Y~lg~~~~ 83 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKL---PKTTVVRLVATMCARSVLTSRA----------DGSYSLGPEML 83 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEECT----------TSCEEECHHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC----------CCeEEecHHHH
Confidence 3456666543368999999999999 6789999999999999999985 34899987643
No 315
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=96.09 E-value=0.0031 Score=54.23 Aligned_cols=57 Identities=19% Similarity=0.361 Sum_probs=46.9
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
.|++.|...+++.|+.|||+.+|+ +...+.|+|+.|...|++++.. .++|++++...
T Consensus 12 ~iL~~l~~~~~~~~~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~----------~~~Y~lg~~~~ 68 (249)
T 1mkm_A 12 EILDFIVKNPGDVSVSEIAEKFNM---SVSNAYKYMVVLEEKGFVLRKK----------DKRYVPGYKLI 68 (249)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECT----------TSCEEECTHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEECC----------CCcEEECHHHH
Confidence 455666554358999999999999 6799999999999999999873 58899987643
No 316
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.08 E-value=0.0022 Score=47.42 Aligned_cols=52 Identities=10% Similarity=0.197 Sum_probs=42.1
Q ss_pred HHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 31 SLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 31 ~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+|..-.++.|+..|.. ++.|+.+||+.+|+ +...+.+.|+.|...|++....
T Consensus 22 ~l~~~~r~~IL~~L~~--~~~~~~ela~~l~i---s~stvs~~L~~L~~~Glv~~~~ 73 (106)
T 1r1u_A 22 ALGDYNRIRIMELLSV--SEASVGHISHQLNL---SQSNVSHQLKLLKSVHLVKAKR 73 (106)
T ss_dssp HTCSHHHHHHHHHHHH--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 3334445566666664 68999999999999 6799999999999999999875
No 317
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=96.08 E-value=0.004 Score=53.78 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=48.9
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
.|++.|...+++.|+.|||+.+|+ +...+.|+|..|...|+++++ +++|++++....+.
T Consensus 18 ~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~~L~~~G~v~~~-----------~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 18 AVLLAFDAQRPNPTLAELATEAGL---SRPAVRRILLTLQKLGYVAGS-----------GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHTCSSSCSSCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-----------TTEEEECGGGHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeC-----------CCEEEEcHHHHHHH
Confidence 456666543468999999999999 678999999999999999987 38999998765444
No 318
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=96.07 E-value=0.016 Score=44.48 Aligned_cols=67 Identities=24% Similarity=0.262 Sum_probs=51.7
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++.... .+.-...|.+|+.|+.+.
T Consensus 33 ~~~iL~~l~~~-~~~~~~ela~~l~i---s~~~vs~~l~~L~~~gli~~~~~~----~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 33 RYSILQTLLKD-APLHQLALQERLQI---DRAAVTRHLKLLEESGYIIRKRNP----DNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECS----SSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCC----CCCCeeEEEECHHHHHHH
Confidence 44566667654 68999999999999 679999999999999999987521 001123589999999766
No 319
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=96.06 E-value=0.012 Score=51.41 Aligned_cols=97 Identities=14% Similarity=0.126 Sum_probs=67.1
Q ss_pred cCCCeEEEecCCchHHHHHHHHHC-----CCCeEEEecc----hH-----------------------HHHhchh-----
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAF-----PNLECTDFDL----PH-----------------------VVNGLES----- 237 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~-----p~~~~~~~Dl----~~-----------------------~~~~a~~----- 237 (307)
..+..||++|+..|..+..+++.. |+-+++++|. |+ ..+.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 446799999999999998887654 4678999984 11 1222333
Q ss_pred -c-CCCeEEEecCCCCC---CC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 238 -D-LANLKYVGGDMFEA---IP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 238 -~-~~rv~~~~~d~~~~---~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
. .++|+++.||+.+. .+ .+|++++---.+ +.....|..+.+.|+| || ++|+|-+
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~p---GG-iIv~DD~ 245 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSV---GG-YVIVDDY 245 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEE---EE-EEEESSC
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCC---CE-EEEEcCC
Confidence 2 48999999999762 32 488888775221 2245789999999998 55 5555543
No 320
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=96.05 E-value=0.0058 Score=44.33 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=43.4
Q ss_pred CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 51 TTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 51 ~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++..+||..+|+ +++.++..++.|...|++++.. +.|.+|+.|+.+.
T Consensus 21 ~~~t~La~~~~l---s~~~~~~~l~~L~~~GLI~~~~-----------~~~~LT~kG~~~l 67 (95)
T 1r7j_A 21 SPKTRIMYGANL---SYALTGRYIKMLMDLEIIRQEG-----------KQYMLTKKGEELL 67 (95)
T ss_dssp BCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-----------TEEEECHHHHHHH
T ss_pred CCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEC-----------CeeEEChhHHHHH
Confidence 899999999999 6899999999999999999984 6799999999655
No 321
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.03 E-value=0.002 Score=46.62 Aligned_cols=73 Identities=12% Similarity=0.125 Sum_probs=53.1
Q ss_pred HHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcch
Q 037127 30 MSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKL 109 (307)
Q Consensus 30 ~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~ 109 (307)
.++....++.|+..|... ++.|+.+||+.+|+ +...+.+.|+.|...|++...... +++....|.+|+.+..
T Consensus 11 ~~l~~~~~~~iL~~L~~~-~~~~~~ela~~l~i---s~~tvs~~l~~L~~~gli~~~~~~----~~~r~~~~~lt~~g~~ 82 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR-RKAPFSQIQKVLDL---TPGNLDSHIRVLERNGLVKTYKVI----ADRPRTVVEITDFGME 82 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEEC----SSSCEEEEEECHHHHH
T ss_pred cccCChHHHHHHHHHHhc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEecC----CCcceEEEEECHHHHH
Confidence 344555566667666533 68999999999999 679999999999999999965410 0111246899998864
Q ss_pred h
Q 037127 110 L 110 (307)
Q Consensus 110 l 110 (307)
.
T Consensus 83 ~ 83 (100)
T 1ub9_A 83 E 83 (100)
T ss_dssp H
T ss_pred H
Confidence 3
No 322
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=96.02 E-value=0.0043 Score=43.62 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=44.5
Q ss_pred hCCcccccccC--CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcch
Q 037127 37 ELSIPDIINKH--GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKL 109 (307)
Q Consensus 37 ~lglfd~L~~~--~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~ 109 (307)
+..|++.|... |.++|+.+||+++|+ +...+.+.|..|...|++...+. ..+.|.+.+....
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgv---sr~tV~~~L~~Le~~G~I~~~g~--------~~~~W~i~~~~~~ 75 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAG--------TPPLWKIAVSTQA 75 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEESS--------SSCEEEEC-----
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC--------CCCeeEEeCcHHh
Confidence 33455555543 137999999999999 67899999999999999998752 2478888776543
No 323
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=96.02 E-value=0.0031 Score=43.91 Aligned_cols=58 Identities=21% Similarity=0.269 Sum_probs=45.1
Q ss_pred hCCcccccccCC--CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecCh
Q 037127 37 ELSIPDIINKHG--KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTN 105 (307)
Q Consensus 37 ~lglfd~L~~~~--~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~ 105 (307)
+..|++.|...+ .++|+.|||+++|+ +...+.+.|..|...|++...+. ..+.|..++
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L~~~G~I~~~g~--------~~~~W~i~~ 75 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAG--------TPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHHHHHTSEEEECS--------SSCEEEECC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCC--------CCCceEecC
Confidence 445666666531 37999999999999 67899999999999999998752 246777664
No 324
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=96.01 E-value=0.0027 Score=50.33 Aligned_cols=69 Identities=12% Similarity=0.176 Sum_probs=56.1
Q ss_pred HHHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127 28 NSMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS 107 (307)
Q Consensus 28 ~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s 107 (307)
.+++|..-.++.|+..|.. ++.|+.|||+.+|+ +...+.+.|+.|...|+++.... +....|++++.+
T Consensus 51 ~l~aL~~p~R~~IL~~L~~--~~~t~~eLa~~lgl---s~stvs~hL~~L~~aGlV~~~~~-------Gr~~~y~lt~~~ 118 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS--GEQTVNNLAAHFPA---SRSAISQHLRVLTEAGLVTPRKD-------GRFRYYRLDPQG 118 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG--CCEEHHHHHTTSSS---CHHHHHHHHHHHHHTTSEEEEEE-------TTEEEEEECHHH
T ss_pred HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEec-------CCEEEEEEChHH
Confidence 3566666778888888875 79999999999999 67999999999999999998762 112368898876
Q ss_pred c
Q 037127 108 K 108 (307)
Q Consensus 108 ~ 108 (307)
.
T Consensus 119 ~ 119 (151)
T 3f6v_A 119 L 119 (151)
T ss_dssp H
T ss_pred H
Confidence 5
No 325
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=95.95 E-value=0.0015 Score=48.58 Aligned_cols=61 Identities=13% Similarity=0.218 Sum_probs=45.9
Q ss_pred HHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127 35 AVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS 107 (307)
Q Consensus 35 a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s 107 (307)
-.++.|+..|.. ++.|+.|||+.+|+ +...+.+.|+.|...|++..... +....|++++.+
T Consensus 25 ~~r~~IL~~L~~--~~~s~~eLa~~lgi---s~stvs~~L~~L~~~GlV~~~~~-------gr~~~y~l~~~~ 85 (108)
T 2kko_A 25 GRRLQILDLLAQ--GERAVEAIATATGM---NLTTASANLQALKSGGLVEARRE-------GTRQYYRIAGED 85 (108)
T ss_dssp STTHHHHHHHTT--CCEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEEE-------TTEEEEEESCHH
T ss_pred HHHHHHHHHHHc--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe-------CCEEEEEEChHH
Confidence 334555666654 68999999999999 67999999999999999998752 112357777543
No 326
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=95.94 E-value=0.049 Score=51.97 Aligned_cols=115 Identities=9% Similarity=0.044 Sum_probs=72.0
Q ss_pred hHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHC-------------CCCeEEEecc-hHHHHhchh-----cCCCe
Q 037127 182 ATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-------------PNLECTDFDL-PHVVNGLES-----DLANL 242 (307)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-------------p~~~~~~~Dl-~~~~~~a~~-----~~~rv 242 (307)
+++.+++.+. .....+|+|-.||+|.++....+.. ...++.|+|+ +.+...|+. ..+.-
T Consensus 205 Vv~lmv~l~~--p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~ 282 (530)
T 3ufb_A 205 VVRFMVEVMD--PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYP 282 (530)
T ss_dssp HHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHhhc--cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccc
Confidence 3444444444 3445689999999999998775432 1346899999 666666653 34445
Q ss_pred EEEecCCCC-CC------CCccEEEechhhc---------cCC-----hhHHHHHHHHHHHhccCC----CCCcEEEEEe
Q 037127 243 KYVGGDMFE-AI------PPADAVVLKWILH---------DWN-----DEECVKILKKCKEAITSN----SKIGKVIIID 297 (307)
Q Consensus 243 ~~~~~d~~~-~~------p~~D~i~~~~vLh---------~~~-----~~~~~~~L~~~~~~L~p~----~~gg~lli~e 297 (307)
.+..+|.+. +. ..||+|+..=..- .++ .+....+++.+.+.|++. ++||++.|+=
T Consensus 283 ~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVl 362 (530)
T 3ufb_A 283 RIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVV 362 (530)
T ss_dssp EEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEE
T ss_pred cccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEe
Confidence 677888875 21 1489888754331 111 112346788888888721 0289888775
Q ss_pred e
Q 037127 298 M 298 (307)
Q Consensus 298 ~ 298 (307)
+
T Consensus 363 P 363 (530)
T 3ufb_A 363 P 363 (530)
T ss_dssp E
T ss_pred c
Confidence 4
No 327
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=95.94 E-value=0.0023 Score=48.40 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=48.1
Q ss_pred HHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChh
Q 037127 31 SLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNA 106 (307)
Q Consensus 31 ~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~ 106 (307)
+|..-.++.|+..|.. ++.++.+||+.+|+ +...+.+.|+.|...|++..... +....|++++.
T Consensus 17 aL~~~~r~~IL~~L~~--~~~~~~eLa~~lgi---s~stvs~~L~~L~~~GlV~~~~~-------gr~~~y~l~~~ 80 (118)
T 2jsc_A 17 ALADPTRCRILVALLD--GVCYPGQLAAHLGL---TRSNVSNHLSCLRGCGLVVATYE-------GRQVRYALADS 80 (118)
T ss_dssp HHSSHHHHHHHHHHHT--TCCSTTTHHHHHSS---CHHHHHHHHHHHTTTTSEEEEEC-------SSSEEEEESSH
T ss_pred HhCCHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEEE-------CCEEEEEEChH
Confidence 3444455666666664 68999999999999 67999999999999999998752 11235777764
No 328
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=95.94 E-value=0.0033 Score=43.74 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
|+|.|+.|||+.+|+ .+..+++-|..|...|++.+..
T Consensus 22 g~~psv~EIa~~lgv---S~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 22 GAPVKTRDIADAAGL---SIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp TSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEES
T ss_pred CCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEecC
Confidence 589999999999999 5688999999999999999985
No 329
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=95.92 E-value=0.0049 Score=47.84 Aligned_cols=50 Identities=20% Similarity=0.321 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.|+.+||+.+++ +...+.+.++.|...|++.+.+ .+.|.+|+.|+.+.
T Consensus 21 ~~~~~~ela~~l~v---s~~tvs~~l~~Le~~Glv~r~~----------~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAV---HPSSVTKMVQKLDKDEYLIYEK----------YRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET----------TTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEee----------CceEEEchhHHHHH
Confidence 68999999999999 6799999999999999999985 47899999988654
No 330
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=95.91 E-value=0.0035 Score=46.42 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 49 KPTTLNDLVSAL-TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 49 ~~~t~~eLA~~~-g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++.|||+.+ |+ +...+.+.|+.|...|++++.... .+.-.-.|.+|+.|+.+.
T Consensus 26 ~~~~~~eLa~~l~~i---s~~tls~~L~~Le~~GlI~r~~~~----~d~r~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 26 GKKRTSELKRLMPNI---TQKMLTQQLRELEADGVINRIVYN----QVPPKVEYELSEYGRSLE 82 (107)
T ss_dssp CCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEEC----SSSCEEEEEECTTGGGGH
T ss_pred CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecC----CCCCeEEEEECccHHHHH
Confidence 789999999999 99 689999999999999999987531 001113599999987654
No 331
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=95.84 E-value=0.0042 Score=53.88 Aligned_cols=57 Identities=19% Similarity=0.327 Sum_probs=47.2
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
+.|++.|...+++.|+.|||+.+|+ +...+.|+|..|...||++++ +++|++++...
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~tL~~~G~v~~~-----------~~~Y~Lg~~~~ 80 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDL---TRATARRFLLTLVELGYVATD-----------GSAFWLTPRVL 80 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEES-----------SSEEEECGGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEec-----------CCEEEEcHHHH
Confidence 3456666543468999999999999 679999999999999999986 38999987643
No 332
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=95.84 E-value=0.0083 Score=46.82 Aligned_cols=66 Identities=9% Similarity=0.116 Sum_probs=48.2
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK 112 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~ 112 (307)
++.++..|...++++|..+||+.+++ +...+.++++.|...|++++... ..++ .+.+|+.|+.+..
T Consensus 41 q~~vL~~l~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~r~~~-------~~D~R~~~~~LT~~G~~~~~ 109 (150)
T 3fm5_A 41 SYSVLVLACEQAEGVNQRGVAATMGL---DPSQIVGLVDELEERGLVVRTLD-------PSDRRNKLIAATEEGRRLRD 109 (150)
T ss_dssp HHHHHHHHHHSTTCCCSHHHHHHHTC---CHHHHHHHHHHHHTTTSEEC------------------CEECHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeeCC-------ccccchheeeECHHHHHHHH
Confidence 45556666544467899999999999 67999999999999999998752 1122 3889999986653
No 333
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.81 E-value=0.0046 Score=43.40 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=47.0
Q ss_pred HhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 36 VELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
....|++.|... + .|+.|||+.+|+ +...+++.|..|...|++.... ++...|.++....
T Consensus 18 ~~~~IL~lL~~~-g-~sa~eLAk~Lgi---Sk~aVr~~L~~Le~eG~I~~~~--------~~PP~W~~~~~~~ 77 (82)
T 1oyi_A 18 IVCEAIKTIGIE-G-ATAAQLTRQLNM---EKREVNKALYDLQRSAMVYSSD--------DIPPRWFMTTEAD 77 (82)
T ss_dssp HHHHHHHHHSSS-T-EEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEECS--------SSSCEEESCC---
T ss_pred HHHHHHHHHHHc-C-CCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCC--------CCCCcceeccCcc
Confidence 345566777763 4 999999999999 6799999999999999999985 3467888886543
No 334
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=95.81 E-value=0.01 Score=45.40 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127 48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS 107 (307)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s 107 (307)
+++.|..+||+.+|+ +...++++|..|...|+++... +..|.|.++...
T Consensus 24 ~~~~s~~ela~~~~i---~~~~v~~il~~L~~~Glv~~~~--------g~~ggy~L~~~~ 72 (129)
T 2y75_A 24 EGPTSLKSIAQTNNL---SEHYLEQLVSPLRNAGLVKSIR--------GAYGGYVLGSEP 72 (129)
T ss_dssp SCCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEC------------CCEEESSCG
T ss_pred CCcCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEecC--------CCCCceEeCCCH
Confidence 378999999999999 6899999999999999998764 114678887543
No 335
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=95.78 E-value=0.0049 Score=47.54 Aligned_cols=78 Identities=14% Similarity=0.210 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCC
Q 037127 16 QAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSAL-TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNN 94 (307)
Q Consensus 16 ~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~-g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~ 94 (307)
...+++++.+.+...+|.. |.. ++.++.||++.+ |+ +...+.+.|+.|...|++++.... .
T Consensus 25 ~~~~l~~l~~~w~l~IL~~---------L~~--g~~~~~eLa~~l~gi---s~~tls~~L~~Le~~GlV~r~~~~----~ 86 (131)
T 1yyv_A 25 SREVLKHVTSRWGVLILVA---------LRD--GTHRFSDLRRXMGGV---SEXMLAQSLQALEQDGFLNRVSYP----V 86 (131)
T ss_dssp HHHHHHHHHSHHHHHHHHH---------GGG--CCEEHHHHHHHSTTC---CHHHHHHHHHHHHHHTCEEEEEEC----S
T ss_pred HHHHHHHHcCCcHHHHHHH---------HHc--CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCcEEEEecC----C
Confidence 3445555555555544433 333 789999999999 79 689999999999999999987521 0
Q ss_pred CCCCCeeecChhcchhh
Q 037127 95 NDEEQGYVLTNASKLLL 111 (307)
Q Consensus 95 ~~~~~~y~~t~~s~~l~ 111 (307)
+.-.-.|++|+.|+.+.
T Consensus 87 d~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 87 VPPHVEYSLTPLGEQVS 103 (131)
T ss_dssp SSCEEEEEECHHHHHHH
T ss_pred CCCeEEEEECccHHHHH
Confidence 00112699999998665
No 336
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=95.75 E-value=0.004 Score=53.38 Aligned_cols=61 Identities=13% Similarity=0.227 Sum_probs=50.2
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
+.++..|... ++.|+.|||+.+|+ +...+.|.|+.|...|++++.+. ...|.+|+.++.+.
T Consensus 155 ~~IL~~L~~~-~~~s~~eLA~~lgl---sksTv~r~L~~Le~~GlV~r~~r---------~~~~~LT~~G~~l~ 215 (244)
T 2wte_A 155 MKLLNVLYET-KGTGITELAKMLDK---SEKTLINKIAELKKFGILTQKGK---------DRKVELNELGLNVI 215 (244)
T ss_dssp HHHHHHHHHH-TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEETT---------TTEEEECHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC---------ccEEEECHHHHHHH
Confidence 3445555443 68999999999999 68999999999999999999742 47899999998665
No 337
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=95.74 E-value=0.015 Score=42.23 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=46.0
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
|++.+..+||+.+++ +...|.|.|..|...|+++.... .++.+..++|+.|+.+.
T Consensus 34 g~~~s~~eLa~~l~l---~~stLsR~l~rLe~~GLV~r~~~------~D~R~~v~LT~~G~~~l 88 (96)
T 2obp_A 34 ATPWSLPKIAKRAQL---PMSVLRRVLTQLQAAGLADVSVE------ADGRGHASLTQEGAALA 88 (96)
T ss_dssp CCCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC------TTSCEEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHhCC---chhhHHHHHHHHHHCCCEEeecC------CCCceeEEECHHHHHHH
Confidence 378999999999999 78999999999999999998652 23345689999998554
No 338
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=95.74 E-value=0.019 Score=44.82 Aligned_cols=67 Identities=19% Similarity=0.252 Sum_probs=50.0
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceee--eccCCCCCCCCCCCeeecChhcchhh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQ--QTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~--~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++ .... .+.-.-.+.+|+.|+.+.
T Consensus 43 ~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~~----~d~R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 43 QLAMINVIYST-PGISVADLTKRLII---TGSSAAANVDGLISLGLVVKLNKTIP----NDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEESCC--C----TTCTTCEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCcCCC----CCCceeEeEECHHHHHHH
Confidence 45566667654 68999999999999 67999999999999999998 4310 001112589999998655
No 339
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=95.69 E-value=0.022 Score=50.15 Aligned_cols=41 Identities=20% Similarity=0.097 Sum_probs=35.1
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES 237 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~ 237 (307)
.....|||++||+|..+.++++. +-+++++|+ +.+++.+++
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 35678999999999999999886 568999999 788887765
No 340
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=95.67 E-value=0.0061 Score=42.73 Aligned_cols=48 Identities=21% Similarity=0.404 Sum_probs=40.3
Q ss_pred hCCcccccccCC-CCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 37 ELSIPDIINKHG-KPTTLNDLVSAL-----TINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 37 ~lglfd~L~~~~-~~~t~~eLA~~~-----g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+..|++.|...+ ++.|++||++.+ ++ +...+.|.|+.|...|++.+..
T Consensus 19 r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i---s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 19 RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI---GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCeEEEe
Confidence 344677776543 689999999999 88 6799999999999999999875
No 341
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=95.67 E-value=0.025 Score=44.68 Aligned_cols=65 Identities=11% Similarity=0.143 Sum_probs=51.7
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK 112 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~ 112 (307)
++.++..|... +++|..+||+.+++ +...+.++++.|...|++++... ..++ .+.+|+.|+.+..
T Consensus 48 q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~-------~~DrR~~~l~LT~~G~~~~~ 115 (162)
T 3k0l_A 48 QFTALSVLAAK-PNLSNAKLAERSFI---KPQSANKILQDLLANGWIEKAPD-------PTHGRRILVTVTPSGLDKLN 115 (162)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CGGGHHHHHHHHHHTTSEEEEEC-------CSSSCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCeEecCC-------CCcCCeeEeEECHhHHHHHH
Confidence 44566677665 68999999999999 67999999999999999998862 1122 4899999986653
No 342
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=95.66 E-value=0.015 Score=44.92 Aligned_cols=66 Identities=9% Similarity=0.093 Sum_probs=50.2
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++..|. . ++.|..+||+.+++ +...+.+.++.|...|++++.... .+.-...+.+|+.|+.+.
T Consensus 39 ~~~iL~~l~-~-~~~~~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~----~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 39 DFLVLRATS-D-GPKTMAYLANRYFV---TQSAITASVDKLEEMGLVVRVRDR----EDRRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHT-T-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEECS----SCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHh-c-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeecCC----CCCceEEEEECHHHHHHH
Confidence 455566676 3 79999999999999 679999999999999999987521 001112488999888655
No 343
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=95.55 E-value=0.006 Score=44.23 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=48.5
Q ss_pred cccccccCCCCCCHHHH----HHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127 40 IPDIINKHGKPTTLNDL----VSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK 112 (307)
Q Consensus 40 lfd~L~~~~~~~t~~eL----A~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~ 112 (307)
++..|... ++.|..+| |+.+++ +...+.++++.|...|++++.... ....|.+|+.|+.+..
T Consensus 13 iL~~l~~~-~~~~~~el~~~la~~l~i---s~~tvs~~l~~Le~~gli~r~~~~-------r~~~~~LT~~G~~~~~ 78 (99)
T 1tbx_A 13 VLAYLYDN-EGIATYDLYKKVNAEFPM---STATFYDAKKFLIQEGFVKERQER-------GEKRLYLTEKGKLFAI 78 (99)
T ss_dssp HHHHHTTC-TTCBHHHHHHHHHTTSCC---CHHHHHHHHHHHHHTTSEEEEEET-------TEEEEEECHHHHHHHH
T ss_pred HHHHHHHc-CCcCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCEEEEecC-------CceEEEECHHHHHHHH
Confidence 44445443 68999999 999999 679999999999999999987521 1346899999986653
No 344
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.53 E-value=0.0069 Score=46.06 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=43.2
Q ss_pred HHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 31 SLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 31 ~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+|..-.++.|+..|.. ++.++.+||+.+|+ +...+.+.|+.|...|++....
T Consensus 42 aL~~~~rl~IL~~L~~--~~~s~~ela~~lgi---s~stvs~~L~~Le~~Glv~~~~ 93 (122)
T 1r1t_A 42 VLADPNRLRLLSLLAR--SELCVGDLAQAIGV---SESAVSHQLRSLRNLRLVSYRK 93 (122)
T ss_dssp HHCCHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HhCCHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 3444456667777764 68999999999999 6799999999999999999875
No 345
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=95.53 E-value=0.012 Score=45.32 Aligned_cols=57 Identities=18% Similarity=0.217 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127 49 KPTTLNDLVSAL-TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK 112 (307)
Q Consensus 49 ~~~t~~eLA~~~-g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~ 112 (307)
|+.++.||++.+ |+ +...|.+.|+.|...|++++..... +.-.-.|++|+.|+.+..
T Consensus 38 g~~rf~eL~~~l~gI---s~~~Ls~~L~~Le~~GLV~R~~~~~----d~r~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 38 GKKRFNEFRRICPSI---TQRMLTLQLRELEADGIVHREVYHQ----VPPKVEYSLTEFGRTLEP 95 (131)
T ss_dssp SCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECS----SSCEEEEEECTTGGGGHH
T ss_pred CCcCHHHHHHHhccc---CHHHHHHHHHHHHHCCCEEEEecCC----CCCeEEEEECHhHHHHHH
Confidence 799999999999 99 6799999999999999999885310 001136999999997763
No 346
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=95.51 E-value=0.026 Score=44.00 Aligned_cols=66 Identities=14% Similarity=0.223 Sum_probs=49.5
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
+.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++..... +.-.-.+.+|+.|+.+.
T Consensus 40 ~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~----d~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 40 LFVLASLKKH-GSLKVSEIAERMEV---KPSAVTLMADRLEQKNLIARTHNTK----DRRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHH-SEEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSS----CTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeecCCCC----CCceEEEEECHHHHHHH
Confidence 3356666653 68999999999999 6799999999999999999875210 00112588999888654
No 347
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=95.49 E-value=0.017 Score=46.05 Aligned_cols=47 Identities=19% Similarity=0.363 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChh
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNA 106 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~ 106 (307)
++.|.++||+..++ ++..++++|..|...|++.... |..|.|.++..
T Consensus 43 ~~~s~~eIA~~~~i---~~~~l~kil~~L~~aGlv~s~r--------G~~GGy~Lar~ 89 (159)
T 3lwf_A 43 GPISLRSIAQDKNL---SEHYLEQLIGPLRNAGIVKSIR--------GAHGGYVLNGD 89 (159)
T ss_dssp CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC--------STTCEEEECSC
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCeEEEec--------CCCCceEecCC
Confidence 68999999999999 6899999999999999999875 23577888754
No 348
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=95.40 E-value=0.038 Score=42.95 Aligned_cols=67 Identities=10% Similarity=0.193 Sum_probs=47.5
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec-cCCCCCCCCCCCeeecChhcchhh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT-LNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~-~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++..| .. ++.|..+||+.+++ +...+.++++.|...|++++.. ++. .+.-.-.+.+|+.|+.+.
T Consensus 40 q~~iL~~l-~~-~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~~---~D~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 40 QSHVLNML-SI-EALTVGQITEKQGV---NKAAVSRRVKKLLNAELVKLEKPDSN---TDQRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHHHH-HH-SCBCHHHHHHHHCS---CSSHHHHHHHHHHHTTSEEC--------------CCBEECHHHHHHH
T ss_pred HHHHHHHH-Hc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCCC---CCCCeeEEEECHhHHHHH
Confidence 44467777 43 79999999999999 6789999999999999999731 000 000112478888888665
No 349
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=95.37 E-value=0.021 Score=45.51 Aligned_cols=68 Identities=16% Similarity=0.257 Sum_probs=51.2
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK 112 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~ 112 (307)
++.++..|... +++|..+||+.+++ +...+.++++.|...|++++.... .+.-.-.+.+|+.|+.+..
T Consensus 47 ~~~iL~~L~~~-~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~----~DrR~~~~~LT~~G~~~~~ 114 (168)
T 2nyx_A 47 QFRTLVILSNH-GPINLATLATLLGV---QPSATGRMVDRLVGAELIDRLPHP----TSRRELLAALTKRGRDVVR 114 (168)
T ss_dssp HHHHHHHHHHH-CSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECS----SCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEeccCC----CCCCeeEEEECHHHHHHHH
Confidence 45566677654 68999999999999 679999999999999999987521 0011124889999986553
No 350
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.35 E-value=0.011 Score=41.26 Aligned_cols=44 Identities=9% Similarity=0.140 Sum_probs=38.7
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
|.+.|... +.+++.|||+.+++ ++..++|-|+.|...|++.+.+
T Consensus 7 Il~~L~~~-g~vsv~eLa~~l~V---S~~TIRrdL~~Le~~G~l~R~~ 50 (78)
T 1xn7_A 7 VRDLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_dssp HHHHHHHS-CSBCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 45666665 79999999999999 6899999999999999999983
No 351
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=95.29 E-value=0.018 Score=40.11 Aligned_cols=44 Identities=16% Similarity=0.319 Sum_probs=37.1
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
|++.|... ++.|..|||+.+|+ +...+++.|..|...|++....
T Consensus 5 Il~~L~~~-~~~s~~eLa~~lgv---s~~tv~r~L~~L~~~GlI~~~~ 48 (81)
T 2htj_A 5 ILEFLNRH-NGGKTAEIAEALAV---TDYQARYYLLLLEKAGMVQRSP 48 (81)
T ss_dssp HHHHHHHS-CCCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 45555543 68999999999999 6799999999999999999653
No 352
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=95.26 E-value=0.016 Score=45.51 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++.||++.+|+ +...+.+.|+.|...|++++.... .+. .-.|.+|+.|+.+.
T Consensus 36 g~~~~~eLa~~lgi---s~~tls~~L~~Le~~GlI~r~~~~----~d~-~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 36 GLTRFGEFQKSLGL---AKNILAARLRNLVEHGVMVAVPAE----SGS-HQEYRLTDKGRALF 90 (146)
T ss_dssp TCCSHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEECS----SSS-CEEEEECHHHHTTH
T ss_pred CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEEecC----CCC-eEEEEECchHHHHH
Confidence 68999999999999 679999999999999999988621 112 34799999987654
No 353
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.16 E-value=0.013 Score=43.68 Aligned_cols=56 Identities=21% Similarity=0.297 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 49 KPTTLNDLVSAL-TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 49 ~~~t~~eLA~~~-g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++.+||+.+ ++ +...+.+.|+.|...|++++.... .+.-.-.|.+|+.|+.+.
T Consensus 34 ~~~~~~eLa~~l~~i---s~~tvs~~L~~Le~~GlI~r~~~~----~d~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 34 GTKRNGELMRALDGI---TQRVLTDRLREMEKDGLVHRESFN----ELPPRVEYTLTPEGYALY 90 (112)
T ss_dssp SCBCHHHHHHHSTTC---CHHHHHHHHHHHHHHTSEEEEEEC----CSSCEEEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCCEEEeecC----CCCCeEEEEECHhHHHHH
Confidence 689999999999 99 689999999999999999987621 001112599999988654
No 354
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=95.16 E-value=0.016 Score=45.56 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
++.|..+||+.+++ ++..++++|..|...|+++... | .|.|.++....
T Consensus 29 ~~~~~~~iA~~~~i---~~~~l~kil~~L~~~Glv~s~r--------G-~GGy~L~~~p~ 76 (149)
T 1ylf_A 29 SLCTSDYMAESVNT---NPVVIRKIMSYLKQAGFVYVNR--------G-PGGAGLLKDLH 76 (149)
T ss_dssp GGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC------------CCEEESSCGG
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEcc--------C-CCceEeCCChh
Confidence 68999999999999 6899999999999999999775 2 57888876543
No 355
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=95.15 E-value=0.022 Score=44.56 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
++.|.++||+.+++ ++..++++|..|...|++.... |..|.|.++....
T Consensus 27 ~~~s~~~IA~~~~i---~~~~l~kil~~L~~aGlv~s~r--------G~~GGy~Lar~p~ 75 (143)
T 3t8r_A 27 GCISLKSIAEENNL---SDLYLEQLVGPLRNAGLIRSVR--------GAKGGYQLRVPAE 75 (143)
T ss_dssp CCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECS--------SSSSEEEESSCGG
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCEEEecC--------CCCCCeeecCCcc
Confidence 68999999999999 6899999999999999998765 2247898875443
No 356
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=95.14 E-value=0.029 Score=44.84 Aligned_cols=49 Identities=16% Similarity=0.352 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
+++|.++||+.+++ ++..+++++..|...||++... +-.|.|.+.....
T Consensus 27 ~~~s~~~IA~~~~i---s~~~l~kil~~L~~aGlv~s~r--------G~~GGy~Lar~p~ 75 (162)
T 3k69_A 27 SKVASRELAQSLHL---NPVMIRNILSVLHKHGYLTGTV--------GKNGGYQLDLALA 75 (162)
T ss_dssp SCBCHHHHHHHHTS---CGGGTHHHHHHHHHTTSSEEEC--------STTCEEECCSCGG
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeec--------CCCCCeEecCChh
Confidence 68999999999999 6899999999999999998775 2256799886544
No 357
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=95.11 E-value=0.016 Score=41.73 Aligned_cols=49 Identities=10% Similarity=0.120 Sum_probs=41.2
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127 50 PTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL 111 (307)
Q Consensus 50 ~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~ 111 (307)
++|..+||+.+++ +...+.++++.|...|++.... ++ .|.+|+.|+.+.
T Consensus 30 ~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~~~~----------d~R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNS---PHSYVWLIIKKFEEAKMVECEL----------EGRTKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEE----------ETTEEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCc---CHHHHHHHHHHHHHCcCccCCC----------CCCeEEEEEChhHHHHH
Confidence 4999999999999 6799999999999999994332 23 599999998665
No 358
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=95.10 E-value=0.0071 Score=46.75 Aligned_cols=68 Identities=13% Similarity=0.199 Sum_probs=50.7
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK 112 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~ 112 (307)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.... .+.-.-.+.+|+.|+.+..
T Consensus 39 ~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~----~D~R~~~~~LT~~G~~~~~ 106 (143)
T 3oop_A 39 QWSVLEGIEAN-EPISQKEIALWTKK---DTPTVNRIVDVLLRKELIVREIST----EDRRISLLSLTDKGRKETT 106 (143)
T ss_dssp HHHHHHHHHHH-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC--------CCSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCeeccCCC----ccCceeeeeECHHHHHHHH
Confidence 44456666654 78999999999999 679999999999999999987521 0011235889999986653
No 359
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=95.07 E-value=0.022 Score=44.75 Aligned_cols=68 Identities=16% Similarity=0.217 Sum_probs=49.1
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++..|...+++.|..+||+.+++ +...+.++++.|...|++++.... .+.-.-.+.+|+.|+.+.
T Consensus 49 ~~~iL~~L~~~~~~~~~~ela~~l~i---~~~tvs~~l~~Le~~Gli~r~~~~----~d~R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 49 KFDAMAQLARNPDGLSMGKLSGALKV---TNGNVSGLVNRLIKDGMVVKAMSA----DDRRSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHCSS---CCSCHHHHHHHHHHHTSEEEC------------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCC----CCCCeEEEEEChhHHHHH
Confidence 45567777322378999999999999 678999999999999999987421 000112488999988655
No 360
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=95.06 E-value=0.012 Score=45.01 Aligned_cols=67 Identities=9% Similarity=0.203 Sum_probs=50.0
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++..... +.-.-.|.+|+.|+.+.
T Consensus 35 ~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~----d~r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 35 QFGVIQVLAKS-GKVSMSKLIENMGC---VPSNMTTMIQRMKRDGYVMTEKNPN----DQRETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHCSS---CCTTHHHHHHHHHHTTSEEEEECSS----CTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCeeeccCCC----CCceeEEEECHHHHHHH
Confidence 44456666654 68999999999999 5789999999999999999874210 01112488999988665
No 361
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=95.05 E-value=0.0078 Score=46.13 Aligned_cols=67 Identities=12% Similarity=0.114 Sum_probs=50.3
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++..... +.-.-.|.+|+.|+.+.
T Consensus 40 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~L~~~glv~r~~~~~----d~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 40 QWAALVRLGET-GPCPQNQLGRLTAM---DAATIKGVVERLDKRGLIQRSADPD----DGRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHTTC---CHHHHHHHHHHHHHTTCEEEEEETT----EEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCC----CCCeeeeEECHhHHHHH
Confidence 45566677654 68999999999999 6799999999999999999864210 00012488999988655
No 362
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=95.04 E-value=0.015 Score=45.71 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=48.6
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127 40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK 112 (307)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~ 112 (307)
++-.|...+++.+..+||+.+++ +...+.++++.|...|++++... ..++ .+.+|+.|+.+..
T Consensus 36 vL~~L~~~~~~~~~~eLa~~l~~---~~~tvs~~v~~Le~~GlV~R~~~-------~~DrR~~~l~LT~~G~~~~~ 101 (151)
T 4aik_A 36 TLYNINRLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLITRHTS-------ANDRRAKRIKLTEQSSPIIE 101 (151)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEEC-------SSCTTCEEEEECGGGHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHCc---CHHHHHHHHHHHHhCCCeEeecC-------CCCCcchhhhcCHHHHHHHH
Confidence 34445443456888999999999 68999999999999999998763 1233 4889999986653
No 363
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=95.03 E-value=0.014 Score=44.81 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=49.4
Q ss_pred hCCcccccccCCC-CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 37 ELSIPDIINKHGK-PTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~-~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++..|...++ +.|..+||+.+++ +...+.++++.|...|++++..... +.-.-.+.+|+.|+.+.
T Consensus 36 ~~~iL~~l~~~~~~~~~~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~~----d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 36 QMTIIDYLSRNKNKEVLQRDLESEFSI---KSSTATVLLQRMEIKKLLYRKVSGK----DSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSS----CTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCC---CcchHHHHHHHHHHCCCEEeeCCCc----CCCeeeeEECHHHHHHH
Confidence 3344556655422 8999999999999 6799999999999999999875210 00112588899887654
No 364
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=95.03 E-value=0.0093 Score=45.75 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=50.5
Q ss_pred hCCcccccccCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127 37 ELSIPDIINKHG-KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK 112 (307)
Q Consensus 37 ~lglfd~L~~~~-~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~ 112 (307)
++.++..|...+ ++.|..+||+.+++ +...+.++++.|...|++++..... +.-.-.+.+|+.|+.+..
T Consensus 33 ~~~vL~~l~~~~~~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~~----D~R~~~~~LT~~G~~~~~ 102 (139)
T 3eco_A 33 QGHTLGYLYAHQQDGLTQNDIAKALQR---TGPTVSNLLRNLERKKLIYRYVDAQ----DTRRKNIGLTTSGIKLVE 102 (139)
T ss_dssp HHHHHHHHHHSTTTCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCC------CCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCCC----CCCeeeeEECHHHHHHHH
Confidence 344555555542 48999999999999 6799999999999999999875210 001124789999986653
No 365
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=95.01 E-value=0.01 Score=42.19 Aligned_cols=44 Identities=9% Similarity=0.142 Sum_probs=38.7
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
|.+.|... +.+++.|||+.+++ ++..++|.|+.|...|++.+..
T Consensus 7 Il~~L~~~-g~vsv~eLA~~l~V---S~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 7 VRDMLALQ-GRMEAKQLSARLQT---PQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHS-CSEEHHHHHHHTTC---CHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 45566665 79999999999999 6899999999999999999984
No 366
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=95.00 E-value=0.031 Score=42.98 Aligned_cols=67 Identities=10% Similarity=0.167 Sum_probs=50.1
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++..... +.-.-.+.+|+.|+.+.
T Consensus 38 q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv~r~~~~~----D~R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 38 GYIVLMAIEND-EKLNIKKLGERVFL---DSGTLTPLLKKLEKKDYVVRTREEK----DERNLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHHSCTT-CEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-----------CEEEECHHHHHTH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCeEecCCCC----CcceeeeeEChHHHHHH
Confidence 44456666654 79999999999999 6799999999999999999885210 00112589999998665
No 367
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=95.00 E-value=0.028 Score=43.25 Aligned_cols=50 Identities=20% Similarity=0.358 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
+++.|+.+||+.+++ +...+.+.++.|...|++.+.. +.|.+|+.++.+.
T Consensus 29 ~~~~s~~ela~~l~i---s~~tv~~~l~~Le~~Gli~r~~-----------~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 29 GEGAKINRIAKDLKI---APSSVFEEVSHLEEKGLVKKKE-----------DGVWITNNGTRSI 78 (139)
T ss_dssp TSCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-----------TEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHhCC---ChHHHHHHHHHHHHCCCEEecC-----------CeEEEChhHHHHH
Confidence 378999999999999 6799999999999999999873 6799999887554
No 368
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=94.97 E-value=0.0093 Score=46.30 Aligned_cols=67 Identities=13% Similarity=0.209 Sum_probs=48.7
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++..... +.-...+.+|+.|+.+.
T Consensus 42 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~----D~R~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 42 EWRIISVLSSA-SDCSVQKISDILGL---DKAAVSRTVKKLEEKKYIEVNGHSE----DKRTYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHHHHS-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC-------------CCBEECHHHHHHH
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecCCC----CcceeEeEECHhHHHHH
Confidence 45566666654 69999999999999 6799999999999999999874210 01123588999888655
No 369
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=94.97 E-value=0.014 Score=43.13 Aligned_cols=79 Identities=14% Similarity=0.171 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHc-CCCCCCcccHHHHHHHHHhCCceeeeccCCCCC
Q 037127 15 AQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSAL-TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRN 93 (307)
Q Consensus 15 ~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~-g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~ 93 (307)
+...+++.+.+.+...+|. .|.. ++.++.|||+.+ |+ +...+.+.|+.|...|++++.....
T Consensus 14 ~~~~~l~~l~~~~~~~IL~---------~L~~--~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~~~--- 76 (107)
T 2fsw_A 14 PVRKSMQIFAGKWTLLIIF---------QINR--RIIRYGELKRAIPGI---SEKMLIDELKFLCGKGLIKKKQYPE--- 76 (107)
T ss_dssp HHHHHHHHHTSSSHHHHHH---------HHTT--SCEEHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEECS---
T ss_pred CHHHHHHHHcCccHHHHHH---------HHHh--CCcCHHHHHHHcccC---CHHHHHHHHHHHHHCCCEEEeecCC---
Confidence 3445555555555544443 3332 689999999999 49 6899999999999999999875310
Q ss_pred CCCCCCeeecChhcchhh
Q 037127 94 NNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 94 ~~~~~~~y~~t~~s~~l~ 111 (307)
+.-.-.|.+|+.|+.+.
T Consensus 77 -d~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 77 -VPPRVEYSLTPLGEKVL 93 (107)
T ss_dssp -SSCEEEEEECHHHHTTH
T ss_pred -CCCeeEEEECccHHHHH
Confidence 00113599999987654
No 370
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.95 E-value=0.26 Score=48.49 Aligned_cols=104 Identities=12% Similarity=0.085 Sum_probs=79.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCC--------CCeEEEecchHHHHhchh-----------cC-----------------
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFP--------NLECTDFDLPHVVNGLES-----------DL----------------- 239 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p--------~~~~~~~Dl~~~~~~a~~-----------~~----------------- 239 (307)
+...||-+|||-=.....|...+| +++++=+|.|++++.=++ ..
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 457899999999988888887765 677888888988754222 11
Q ss_pred -CCeEEEecCCCCC-------------CCC-ccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEeeecCCCC
Q 037127 240 -ANLKYVGGDMFEA-------------IPP-ADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMMRENKK 304 (307)
Q Consensus 240 -~rv~~~~~d~~~~-------------~p~-~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~~~~~~ 304 (307)
++..+++.|+.+. .+. .-++++=-+|.+++.+++..+|+.+.+ + + ++.+++.|.+.+...
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~---~~~~~~~e~~~~~~~ 261 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-E---NSHFIILEQLIPKGP 261 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-S---SEEEEEEEECCTTCT
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-C---CceEEEEEeecCCCC
Confidence 4899999999872 122 456677778999999999999999985 4 4 588999999877543
No 371
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=94.92 E-value=0.0099 Score=47.50 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=49.8
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK 112 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~ 112 (307)
++.++..|...++++|..+||+.+++ +...+.++++.|...|++++..... +.-.-.+.+|+.|+.+..
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~GlV~r~~~~~----DrR~~~l~LT~~G~~~~~ 123 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKAIGI---EQPSLVRTLDQLEDKGLISRQTCAS----DRRAKRIKLTEKAEPLIA 123 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC------------CEEEECGGGHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEeeCCCC----CCCeeEEEECHHHHHHHH
Confidence 44556666543368999999999999 6899999999999999999875210 001135889999886653
No 372
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=94.90 E-value=0.021 Score=44.99 Aligned_cols=67 Identities=15% Similarity=0.255 Sum_probs=48.5
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.... .+.-...|.+|+.|+.+.
T Consensus 51 ~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~glv~r~~~~----~d~R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 51 EWRVITILALY-PGSSASEVSDRTAM---DKVAVSRAVARLLERGFIRRETHG----DDRRRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHS-TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC-------------CCCEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeecCC----CCCCeeEEEECHHHHHHH
Confidence 44566677654 68999999999999 679999999999999999986411 001113588898888655
No 373
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=94.87 E-value=0.01 Score=45.39 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=49.2
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~ 111 (307)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++... ..++ .|.+|+.|+.+.
T Consensus 31 ~~~iL~~l~~~-~~~~~~ela~~l~~---s~~tvs~~l~~L~~~glv~~~~~-------~~d~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 31 QVACLLRIHRE-PGIKQDELATFFHV---DKGTIARTLRRLEESGFIEREQD-------PENRRRYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHHHHS-TTCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEE-------TTEEEEEEEEECHHHHHTH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecC-------CCCceeEEeeECHhHHHHH
Confidence 33455566554 78999999999999 67999999999999999998642 1122 388898888654
No 374
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=94.87 E-value=0.0098 Score=46.34 Aligned_cols=67 Identities=18% Similarity=0.291 Sum_probs=50.5
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.... .+.-.-.+.+|+.|+.+.
T Consensus 42 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~----~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 42 QRAILEGLSLT-PGATAPQLGAALQM---KRQYISRILQEVQRAGLIERRTNP----EHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCS----SSTTSCEEEECHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCc----ccccceeeEEChhhHHHH
Confidence 44456666654 68999999999999 679999999999999999997521 001112588999888654
No 375
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.85 E-value=0.016 Score=44.71 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=49.7
Q ss_pred hCCccccc-ccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 37 ELSIPDII-NKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L-~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++..| .. +++.|..+||+.+++ +...+.++++.|...|++++.... .+.-.-.+.+|+.|+.+.
T Consensus 39 ~~~iL~~l~~~-~~~~t~~~la~~l~~---s~~~vs~~l~~L~~~glv~r~~~~----~d~R~~~~~lT~~G~~~~ 106 (146)
T 2fbh_A 39 RWLVLLHLARH-RDSPTQRELAQSVGV---EGPTLARLLDGLESQGLVRRLAVA----EDRRAKHIVLTPKADVLI 106 (146)
T ss_dssp HHHHHHHHHHC-SSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCB----TTBCSCEEEECTTHHHHH
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCeeecCCC----cccCeeeeEECHhHHHHH
Confidence 34456666 43 378999999999999 679999999999999999987521 001112488888888654
No 376
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=94.81 E-value=0.017 Score=41.55 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=44.8
Q ss_pred ccccCCCCCCHHHHHHHcCCCCCCccc-HHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 43 IINKHGKPTTLNDLVSALTINPSKTRC-VYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 43 ~L~~~~~~~t~~eLA~~~g~~~~~~~~-l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
.|...+.+.|..+||+.+++ +... +.++++.|...|++...+.+ .-.-.+.+|+.|+.+.
T Consensus 23 ~l~~~~~~~t~~eLa~~l~i---s~~t~vs~~l~~Le~~Glv~~~~~d------rR~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 23 EFEKKGYEPSLAEIVKASGV---SEKTFFMGLKDRLIRAGLVKEETLS------YRVKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHTTCCCCHHHHHHHHCC---CHHHHHTTHHHHHHHTTSEEEEEEE------TTEEEEEECHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHCC---CchHHHHHHHHHHHHCCCeecCCCC------CCeEEEEECHhHHHHH
Confidence 33443237999999999999 6788 99999999999999954320 0113588999988665
No 377
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=94.78 E-value=0.22 Score=39.10 Aligned_cols=97 Identities=9% Similarity=0.055 Sum_probs=62.9
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccCCCCCCHHHHHHHcC-CCCCCcccHHHHHHHHHhCCc
Q 037127 4 IDGDHDTELLEAQAHVWNHIFNFINSMSLKCAVELSIPDIINKHGKPTTLNDLVSALT-INPSKTRCVYRLMRILIHSGF 82 (307)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~~~~g~~~~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g-~~~~~~~~l~r~L~~L~~~g~ 82 (307)
-|+-.+-.-+.....+...+.+..+..+|...+.- + .+..|+++|++.++ + ....+++.|+.|...|+
T Consensus 7 ~~~~~~~~~f~~~~~~~~~l~~~tR~~IL~~Ll~~------p--~~~~ta~eL~~~l~~l---S~aTVyrhL~~L~eaGL 75 (151)
T 3u1d_A 7 QDRGERPNGFGDELERRRFVLHETRLDVLHQILAQ------P--DGVLSVEELLYRNPDE---TEANLRYHVDELVDRGI 75 (151)
T ss_dssp CBTTBCCTTHHHHHHHHHHHCCHHHHHHHHHHHHS------T--TSCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTS
T ss_pred ccCCCCchhHHHHHHHHHHhcchHHHHHHHHHHcC------C--CCCCCHHHHHHhcCCC---CHHHHHHHHHHHHHCCC
Confidence 33333334444456666666666666665554332 1 15689999999998 8 67999999999999999
Q ss_pred eeeeccCC-CCCCCCCCCeeecChhcchhh
Q 037127 83 FAQQTLNS-SRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 83 l~~~~~~~-~~~~~~~~~~y~~t~~s~~l~ 111 (307)
+++..... .+..+.-.-.|++|+.|+...
T Consensus 76 V~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l 105 (151)
T 3u1d_A 76 VEKIPVPRAKSVDDPPTTFYAVTGEGIALL 105 (151)
T ss_dssp EEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred eEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence 99764311 000111112799999999554
No 378
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=94.77 E-value=0.039 Score=42.46 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=50.6
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK 112 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~ 112 (307)
++.++..|... ++ |..+||+.+++ +...+.+.++.|...|++++.... .++ .+.+|+.|+.+..
T Consensus 39 ~~~iL~~l~~~-~~-~~~~la~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~-------~D~R~~~~~LT~~G~~~~~ 105 (144)
T 3f3x_A 39 DFSILKATSEE-PR-SMVYLANRYFV---TQSAITAAVDKLEAKGLVRRIRDS-------KDRRIVIVEITPKGRQVLL 105 (144)
T ss_dssp HHHHHHHHHHS-CE-EHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEET-------TEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHC-CC-CHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeccCC-------CCCceEEEEECHHHHHHHH
Confidence 55667777764 45 99999999999 679999999999999999987521 122 4899999986653
No 379
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=94.75 E-value=0.03 Score=46.88 Aligned_cols=52 Identities=17% Similarity=0.362 Sum_probs=46.4
Q ss_pred CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127 48 GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK 112 (307)
Q Consensus 48 ~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~ 112 (307)
+++++..+||+.+++ +...+.+.++.|...|++++.. ...+.+|+.|+.+..
T Consensus 18 ~~~~~~~~lA~~l~v---s~~tvs~~l~~Le~~GlV~r~~----------~~~i~LT~~G~~~~~ 69 (214)
T 3hrs_A 18 HNKITNKEIAQLMQV---SPPAVTEMMKKLLAEELLIKDK----------KAGYLLTDLGLKLVS 69 (214)
T ss_dssp CSCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET----------TTEEEECHHHHHHHH
T ss_pred CCCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEEec----------CCCeEECHHHHHHHH
Confidence 379999999999999 6799999999999999999986 478999999986653
No 380
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=94.71 E-value=0.015 Score=41.91 Aligned_cols=61 Identities=15% Similarity=0.218 Sum_probs=49.0
Q ss_pred hCCcccccccCCCCCCHHHHHH-HcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127 37 ELSIPDIINKHGKPTTLNDLVS-ALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK 112 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~-~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~ 112 (307)
++.|+-.|... ++.|+.+||+ ..++ +...+.|-++.|...|+++.++ ++ +.+|+.|+.+..
T Consensus 18 QfsiL~~L~~~-~~~t~~~Lae~~l~~---drstvsrnl~~L~r~GlVe~~~----------~D-l~LT~~G~~~l~ 79 (95)
T 1bja_A 18 TATILITIAKK-DFITAAEVREVHPDL---GNAVVNSNIGVLIKKGLVEKSG----------DG-LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHHHHHHS-TTBCHHHHHHTCTTS---CHHHHHHHHHHHHTTTSEEEET----------TE-EEECHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHhcc---cHHHHHHHHHHHHHCCCeecCC----------CC-eeeCHhHHHHHH
Confidence 34455566665 5999999999 9999 7889999999999999999332 33 999999986653
No 381
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=94.70 E-value=0.17 Score=45.73 Aligned_cols=101 Identities=18% Similarity=0.132 Sum_probs=69.9
Q ss_pred ccCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh-----------cCCCeEEEecCCCC--C-CC-Ccc
Q 037127 194 FEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES-----------DLANLKYVGGDMFE--A-IP-PAD 257 (307)
Q Consensus 194 ~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~-----------~~~rv~~~~~d~~~--~-~p-~~D 257 (307)
...+.+|||+-+|.|.=+.++++..++-.++..|+ +.-++.+++ ...++.+...|... + .+ .||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 45678999999999999999999877767899998 443443332 23578888888876 1 23 499
Q ss_pred EEEec----h----hh-------ccCChhHH-------HHHHHHHHHhccCCCCCcEEEEEe
Q 037127 258 AVVLK----W----IL-------HDWNDEEC-------VKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 258 ~i~~~----~----vL-------h~~~~~~~-------~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
.|++- . ++ ..|..++. .+||+++.+.+|| ||+|+-..
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkp---GG~LVYsT 284 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKP---GGHVVYST 284 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCC---CcEEEEEe
Confidence 99862 1 11 22333221 4789999999999 77665433
No 382
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=94.70 E-value=0.013 Score=44.75 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=50.0
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK 112 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~ 112 (307)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.... .+.-.-.+.+|+.|+.+..
T Consensus 36 ~~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~gli~r~~~~----~d~R~~~~~lT~~G~~~~~ 103 (138)
T 1jgs_A 36 QFKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNP----NDKRGVLVKLTTGGAAICE 103 (138)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECT----TCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecCCc----ccCceeEeEEChhHHHHHH
Confidence 33445555543 68999999999999 679999999999999999987521 0001124889999986653
No 383
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=94.66 E-value=0.014 Score=44.92 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=49.5
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
+.++..|... ++.|..+||+.+++ +...+.++++.|...|++.+..... +.-.-.+.+|+.|+.+.
T Consensus 32 ~~iL~~l~~~-~~~t~~~la~~l~~---s~~~vs~~l~~Le~~gli~r~~~~~----d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 32 YLYLVRVCEN-PGIIQEKIAELIKV---DRTTAARAIKRLEEQGFIYRQEDAS----NKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSS----CTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHC-cCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecCCC----CCceeeeEEChhHHHHH
Confidence 3455566654 68999999999999 6799999999999999999875210 00112488999988655
No 384
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=94.65 E-value=0.024 Score=43.74 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=50.5
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++..... +.-.-.+.+|+.|+.+.
T Consensus 33 q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~----D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 33 LFAVLYTLATE-GSRTQKHIGEKWSL---PKQTVSGVCKTLAGQGLIEWQEGEQ----DRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECCCSS----CGGGSCEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeccCCC----CCceeeeeEChhHHHHH
Confidence 45566666554 67999999999999 6799999999999999999865210 00112589999998664
No 385
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=94.59 E-value=0.048 Score=42.93 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=50.9
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK 112 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~ 112 (307)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.... .+.-.-.+.+|+.|+.+..
T Consensus 55 q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~----~DrR~~~~~LT~~G~~~~~ 122 (161)
T 3e6m_A 55 KLRLLSSLSAY-GELTVGQLATLGVM---EQSTTSRTVDQLVDEGLAARSISD----ADQRKRTVVLTRKGKKKLA 122 (161)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC-------CCCSCEEEECHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCc----ccCCeeEeeECHHHHHHHH
Confidence 44466666654 68999999999999 678999999999999999987521 0011135899999986653
No 386
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.57 E-value=0.033 Score=42.79 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=50.1
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~ 111 (307)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++.... .++ .|.+|+.|+.+.
T Consensus 35 ~~~iL~~l~~~-~~~~~~~la~~l~~---s~~tvs~~l~~L~~~glv~r~~~~-------~d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 35 QFDILQKIYFE-GPKRPGELSVLLGV---AKSTVTGLVKRLEADGYLTRTPDP-------ADRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEET-------TEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCC-------CCCceEEEEECHHHHHHH
Confidence 45556666653 68999999999999 679999999999999999987521 122 488999888665
No 387
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.57 E-value=0.028 Score=43.35 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=50.3
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++..|...+++.|..+||+.+++ +...+.+.++.|...|++++.... .+.-.-.+.+|+.|+.+.
T Consensus 37 ~~~iL~~l~~~~~~~~~~~la~~l~i---~~~~vs~~l~~Le~~glv~r~~~~----~d~R~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 37 QLVVLGAIDRLGGDVTPSELAAAERM---RSSNLAALLRELERGGLIVRHADP----QDGRRTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC----------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeCCCC----CCCCceeeEECHHHHHHH
Confidence 45566677651268999999999999 679999999999999999987521 001112488999988655
No 388
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=94.52 E-value=0.036 Score=43.28 Aligned_cols=46 Identities=11% Similarity=0.200 Sum_probs=39.5
Q ss_pred CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcch
Q 037127 52 TLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKL 109 (307)
Q Consensus 52 t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~ 109 (307)
|.++||+..++ ++..|+++|..|...||+.... | .|.|.++.-...
T Consensus 25 s~~~IA~~~~i---~~~~l~kIl~~L~~aGlv~s~r--------G-~GGy~Lar~p~~ 70 (145)
T 1xd7_A 25 SSEIIADSVNT---NPVVVRRMISLLKKADILTSRA--------G-VPGASLKKDPAD 70 (145)
T ss_dssp CHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECCS--------S-SSSCEESSCGGG
T ss_pred CHHHHHHHHCc---CHHHHHHHHHHHHHCCceEeec--------C-CCCceecCCHHH
Confidence 99999999999 6899999999999999999775 3 577888765443
No 389
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=94.50 E-value=0.044 Score=42.54 Aligned_cols=67 Identities=16% Similarity=0.249 Sum_probs=48.6
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++..|... +++|..+||+.+++ +...+.++++.|...|++++..... +.-.-.+.+|+.|+.+.
T Consensus 43 q~~iL~~l~~~-~~~~~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~----D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 43 QYLVMLTLWEE-NPQTLNSIGRHLDL---SSNTLTPMLKRLEQSGWVKRERQQS----DKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHS-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEC-------------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeCCCCC----CcceeeeeECHHHHHHH
Confidence 45556667654 78999999999999 6799999999999999999875210 00112588999888654
No 390
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=94.50 E-value=0.025 Score=44.22 Aligned_cols=67 Identities=10% Similarity=0.151 Sum_probs=50.0
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.... .+.-.-.+.+|+.|+.+.
T Consensus 45 ~~~iL~~l~~~-~~~t~~ela~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~----~d~R~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 45 EWRVLACLVDN-DAMMITRLAKLSLM---EQSRMTRIVDQMDARGLVTRVADA----KDKRRVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHHHHSSC-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC----------CCCEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCC----CcCCeeEeEECHHHHHHH
Confidence 44566677654 68999999999999 679999999999999999987421 000113488999988655
No 391
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=94.46 E-value=0.041 Score=44.77 Aligned_cols=75 Identities=19% Similarity=0.280 Sum_probs=54.0
Q ss_pred HHHHHHHHhCCcccccccCCCCCCHHHHHHHcC-CCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127 29 SMSLKCAVELSIPDIINKHGKPTTLNDLVSALT-INPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS 107 (307)
Q Consensus 29 ~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g-~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s 107 (307)
+++|.--.++.|+..|.. ++.|+.+||+.++ + +...+.+.|+.|...|+++...... ..+.-+..|++++.+
T Consensus 17 ~~~La~P~Rl~il~~L~~--~~~~~~~l~~~l~~~---~~~~~s~Hl~~L~~aglv~~~~e~~--~~g~~er~y~~~~~~ 89 (182)
T 4g6q_A 17 VDLLHHPLRWRITQLLIG--RSLTTRELAELLPDV---ATTTLYRQVGILVKAGVLMVTAEHQ--VRGAVERTYTLNTQA 89 (182)
T ss_dssp HHHTTSHHHHHHHHHTTT--SCEEHHHHHHHCTTB---CHHHHHHHHHHHHHHTSEEEEEEEE--ETTEEEEEEEECTTT
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCeEEEEeec--ccCcceeEEEecccc
Confidence 445555678888888875 7999999999996 7 5688999999999999998665210 011113458887765
Q ss_pred chh
Q 037127 108 KLL 110 (307)
Q Consensus 108 ~~l 110 (307)
..+
T Consensus 90 ~~~ 92 (182)
T 4g6q_A 90 GDA 92 (182)
T ss_dssp TTS
T ss_pred ccC
Confidence 544
No 392
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=94.43 E-value=0.046 Score=43.43 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=48.4
Q ss_pred hCCcccccccC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127 37 ELSIPDIINKH-GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK 112 (307)
Q Consensus 37 ~lglfd~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~ 112 (307)
++.++..|... ++++|..+||+.+++ +...+.++++.|...|++++... ..++ .+.+|+.|+.+..
T Consensus 48 q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~-------~~DrR~~~l~LT~~G~~~~~ 117 (168)
T 3u2r_A 48 QYNTLRLLRSVHPEGMATLQIADRLIS---RAPDITRLIDRLDDRGLVLRTRK-------PENRRVVEVALTDAGLKLLK 117 (168)
T ss_dssp HHHHHHHHHHHTTSCEEHHHHHHHC------CTHHHHHHHHHHHTTSEEEEEE-------TTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEeecCC-------CCCCCeeEeEECHHHHHHHH
Confidence 44556666653 268999999999999 57899999999999999998752 1122 4889999886653
No 393
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.42 E-value=0.018 Score=45.08 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=50.1
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.... .+.-.-.|.+|+.|+.+.
T Consensus 46 ~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~----~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 46 ELYAFLYVALF-GPKKMKEIAEFLST---TKSNVTNVVDSLEKRGLVVREMDP----VDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEEECT----TTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCC----CCcceeEEEECHHHHHHH
Confidence 44556666554 58999999999999 679999999999999999987521 001112488999988665
No 394
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=94.38 E-value=0.015 Score=45.90 Aligned_cols=66 Identities=17% Similarity=0.190 Sum_probs=49.3
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
+.++..|... +++|..+||+.+++ +...+.++++.|...|++++..... +.-.-.+.+|+.|+.+.
T Consensus 53 ~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~----DrR~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 53 FPFLMRLYRE-DGINQESLSDYLKI---DKGTTARAIQKLVDEGYVFRQRDEK----DRRSYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC-------CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCCC----CCCeeEEEECHHHHHHH
Confidence 3345566554 78999999999999 6799999999999999999875210 00012588999988665
No 395
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=94.37 E-value=0.12 Score=39.77 Aligned_cols=67 Identities=9% Similarity=0.125 Sum_probs=49.8
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++.... .+.-.-.+.+|+.|+.+.
T Consensus 44 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~----~d~R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 44 QFVALQWLLEE-GDLTVGELSNKMYL---ACSTTTDLVDRMERNGLVARVRDE----HDRRVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC----C---CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCC----CCcceeEeEECHhHHHHH
Confidence 34455666654 68999999999999 689999999999999999987521 000112488999988665
No 396
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=94.36 E-value=0.018 Score=45.47 Aligned_cols=67 Identities=12% Similarity=0.172 Sum_probs=50.8
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.... .+.-.-.|.+|+.|+.+.
T Consensus 54 ~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~----~d~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 54 KMRALAILSAK-DGLPIGTLGIFAVV---EQSTLSRALDGLQADGLVRREVDS----DDQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC------CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecCCC----CCCCeeEEEECHHHHHHH
Confidence 45566777654 68999999999999 679999999999999999987421 001123488999888654
No 397
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=94.31 E-value=0.031 Score=43.17 Aligned_cols=69 Identities=12% Similarity=0.214 Sum_probs=51.2
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcC
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKD 113 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~ 113 (307)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.... .+.-.-.+.+|+.|+.+...
T Consensus 42 ~~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~glv~r~~~~----~d~R~~~~~LT~~G~~~~~~ 110 (147)
T 1z91_A 42 QYLALLLLWEH-ETLTVKKMGEQLYL---DSGTLTPMLKRMEQQGLITRKRSE----EDERSVLISLTEDGALLKEK 110 (147)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHTTTC---CHHHHHHHHHHHHHHTSEECCBCS----SCTTSBEEEECHHHHSGGGG
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCC---CcCcHHHHHHHHHHCCCEEeccCC----CCCCeeEEEECHhHHHHHHH
Confidence 44455566543 68999999999999 689999999999999999987521 00112248899999866643
No 398
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=94.29 E-value=0.027 Score=44.29 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.|..+||+.+++ +...+.+.|+.|...|+++... +..+.+|+.|+.+.
T Consensus 53 ~~~~~~~la~~l~v---s~~tvs~~l~~Le~~Glv~r~~----------~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 53 GEARQVDMAARLGV---SQPTVAKMLKRLATMGLIEMIP----------WRGVFLTAEGEKLA 102 (155)
T ss_dssp SCCCHHHHHHHHTS---CHHHHHHHHHHHHHTTCEEEET----------TTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEec----------CCceEEChhHHHHH
Confidence 67999999999999 6799999999999999999875 46799999887654
No 399
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=94.28 E-value=0.016 Score=44.06 Aligned_cols=48 Identities=13% Similarity=0.194 Sum_probs=39.1
Q ss_pred hCCcccccccCCCC-CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 37 ELSIPDIINKHGKP-TTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 37 ~lglfd~L~~~~~~-~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+..|+..|...++| +|+.|||+.+++ +...+.|.|+.|...|++.+..
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~---s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKL---DVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeeC
Confidence 34455555544456 999999999999 6899999999999999999864
No 400
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=94.23 E-value=0.027 Score=38.54 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=47.0
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecC
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLT 104 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t 104 (307)
+-.|++.|.+.|.|++..+||+.+|+ +..-+...|..|-..|.+.... .-.|+++
T Consensus 21 eekVLe~LkeaG~PlkageIae~~Gv---dKKeVdKaik~LKkEgkI~SPk----------RCyw~~~ 75 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLVKECQA---PKRELNQVLYRMKKELKVSLTS----------PATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE----------TTEEEES
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHcCCccCCC----------CceeeCC
Confidence 44566777777899999999999999 7899999999999999999886 4678876
No 401
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=94.20 E-value=0.016 Score=65.07 Aligned_cols=98 Identities=15% Similarity=0.173 Sum_probs=46.9
Q ss_pred CCeEEEecCCchHHHHHHHHHCCC-----CeEEEecc-hHHHHhchhc--CCCeEEEecCCCCC---CC-CccEEEechh
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPN-----LECTDFDL-PHVVNGLESD--LANLKYVGGDMFEA---IP-PADAVVLKWI 264 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~-----~~~~~~Dl-~~~~~~a~~~--~~rv~~~~~d~~~~---~p-~~D~i~~~~v 264 (307)
..+||+||.|+|..+..+++.... .+.+..|. +...+.+++. .-.++...-|..++ .+ .||+|+.+++
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~v 1320 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNCA 1320 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEECC
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEccc
Confidence 468999999999877777665432 24666677 4444444420 01122222233222 12 4999999999
Q ss_pred hccCChhHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 265 LHDWNDEECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 265 Lh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
||--++. ...|+++++.|+| ||++++.|..
T Consensus 1321 l~~t~~~--~~~l~~~~~lL~p---~G~l~~~e~~ 1350 (2512)
T 2vz8_A 1321 LATLGDP--AVAVGNMAATLKE---GGFLLLHTLL 1350 (2512)
T ss_dssp -------------------------CCEEEEEEC-
T ss_pred ccccccH--HHHHHHHHHhcCC---CcEEEEEecc
Confidence 9955443 4789999999999 9999988743
No 402
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=94.15 E-value=0.038 Score=42.36 Aligned_cols=67 Identities=16% Similarity=0.262 Sum_probs=50.4
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++..|... ++.|..+||+.+++ +...+.+.++.|...|++++.... .+.-.-.+.+|+.|+.+.
T Consensus 39 ~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~----~d~R~~~~~lT~~G~~~~ 105 (142)
T 2bv6_A 39 QFLVLTILWDE-SPVNVKKVVTELAL---DTGTVSPLLKRMEQVDLIKRERSE----VDQREVFIHLTDKSETIR 105 (142)
T ss_dssp HHHHHHHHHHS-SEEEHHHHHHHTTC---CTTTHHHHHHHHHHTTSEEEEECS----SSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCC----CCcceEEEEEChHHHHHH
Confidence 45566666654 68999999999999 578999999999999999987521 001112588899988655
No 403
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=94.12 E-value=0.024 Score=44.23 Aligned_cols=69 Identities=10% Similarity=0.206 Sum_probs=50.6
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhcC
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLKD 113 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~~ 113 (307)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++.... .+.-.-.+.+|+.|+.+...
T Consensus 49 ~~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~----~d~R~~~~~lT~~G~~~~~~ 117 (153)
T 2pex_A 49 QYLVMLVLWET-DERSVSEIGERLYL---DSATLTPLLKRLQAAGLVTRTRAA----SDERQVIIALTETGRALRSK 117 (153)
T ss_dssp HHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-----------CEEEECHHHHHGGGG
T ss_pred HHHHHHHHHhC-CCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCc----ccCCeeEeeECHHHHHHHHH
Confidence 44456666654 68999999999999 679999999999999999987521 00011258899999866543
No 404
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=93.92 E-value=0.024 Score=42.51 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=41.2
Q ss_pred HHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 33 KCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 33 ~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
....++.++..|.. ++.|+.+||+.+|+ +...+.+.|+.|...|++....
T Consensus 30 ~~~~~~~il~~L~~--~~~s~~ela~~l~i---s~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 30 ATPSRLMILTQLRN--GPLPVTDLAEAIGM---EQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp CCHHHHHHHHHHHH--CCCCHHHHHHHHSS---CHHHHHHHHHHHHHHCSEEEEE
T ss_pred CCHHHHHHHHHHHH--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 33445666666665 57999999999999 6899999999999999998775
No 405
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=93.74 E-value=0.037 Score=42.62 Aligned_cols=66 Identities=15% Similarity=0.259 Sum_probs=46.5
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++..|... + .|..+||+.+++ +...+.++++.|...|++++.... .+.-.-.|.+|+.|..+.
T Consensus 40 ~~~iL~~l~~~-~-~t~~eLa~~l~~---s~~tvs~~l~~L~~~Glv~r~~~~----~d~R~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 40 QEHILMLLSEE-S-LTNSELARRLNV---SQAAVTKAIKSLVKEGMLETSKDS----KDARVIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHHHHTTC-C-CCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC--------------CCEECGGGHHHH
T ss_pred HHHHHHHHHhC-C-CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEeccCC----CCCceeEEEECHhHHHHH
Confidence 44455666653 4 999999999999 679999999999999999987521 001123588888887654
No 406
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=93.66 E-value=0.046 Score=45.33 Aligned_cols=72 Identities=17% Similarity=0.271 Sum_probs=51.1
Q ss_pred HHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 30 MSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 30 ~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
.+|..-.++.|+..|.. +|.|+.+||+.+|+ +...+.+.|+.|...|++...... ...++..-.|++|+.+.
T Consensus 10 kaL~~~~rl~IL~~L~~--~~~s~~eLa~~l~i---s~stvs~hLk~Le~~GLV~~~~~~--~~~g~~~~~Y~Lt~~~~ 81 (202)
T 2p4w_A 10 DVLGNETRRRILFLLTK--RPYFVSELSRELGV---GQKAVLEHLRILEEAGLIESRVEK--IPRGRPRKYYMIKKGLR 81 (202)
T ss_dssp HHHHSHHHHHHHHHHHH--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC--BTTBCCCEEEEECTTEE
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEeec--cCCCCceEEEEEChHHH
Confidence 34444455555666654 79999999999999 679999999999999999987531 01112234588887654
No 407
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=93.62 E-value=0.014 Score=42.46 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhc
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNAS 107 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s 107 (307)
++.|+.|||+.+|+ +...+.+.|+.|... ++..... +....|++++.+
T Consensus 40 ~~~~~~ela~~l~i---s~stvs~hL~~L~~~-lv~~~~~-------gr~~~y~l~~~~ 87 (99)
T 2zkz_A 40 KALNVTQIIQILKL---PQSTVSQHLCKMRGK-VLKRNRQ-------GLEIYYSINNPK 87 (99)
T ss_dssp SCEEHHHHHHHHTC---CHHHHHHHHHHHBTT-TBEEEEE-------TTEEEEECCCHH
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHH-hhhheEe-------CcEEEEEEChHH
Confidence 68999999999999 689999999999999 9987652 112357777643
No 408
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=93.52 E-value=0.086 Score=42.86 Aligned_cols=70 Identities=16% Similarity=0.155 Sum_probs=52.0
Q ss_pred HhCCcccccccC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127 36 VELSIPDIINKH-GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK 112 (307)
Q Consensus 36 ~~lglfd~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~ 112 (307)
.++.++..|... ++++|..+||+.+++ +...+.++++.|...|++++..... +.-.-.+.+|+.|+.+..
T Consensus 42 ~q~~vL~~L~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~----DrR~~~l~LT~~G~~~~~ 112 (189)
T 3nqo_A 42 RQYMTILSILHLPEEETTLNNIARKMGT---SKQNINRLVANLEKNGYVDVIPSPH----DKRAINVKVTDLGKKVMV 112 (189)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSS----CSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCCC----CCCeeEEEECHHHHHHHH
Confidence 355566666531 268999999999999 6799999999999999999975210 001135899999986654
No 409
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=93.50 E-value=0.044 Score=42.41 Aligned_cols=69 Identities=10% Similarity=0.167 Sum_probs=43.2
Q ss_pred hCCcccccccCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127 37 ELSIPDIINKHG-KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK 112 (307)
Q Consensus 37 ~lglfd~L~~~~-~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~ 112 (307)
++.++..|...+ ++.|..+||+.+++ +...+.++++.|...|++++..... +.-.-.+.+|+.|+.+..
T Consensus 43 q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~----DrR~~~~~LT~~G~~~~~ 112 (148)
T 3jw4_A 43 QGRMIGYIYENQESGIIQKDLAQFFGR---RGASITSMLQGLEKKGYIERRIPEN----NARQKNIYVLPKGAALVE 112 (148)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHC---------CHHHHHHHHHHTTSBCCC------------CCCCBCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeeCCCC----CchhheeeECHHHHHHHH
Confidence 344555555432 68999999999999 6789999999999999999875210 000125788998886653
No 410
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=93.48 E-value=0.044 Score=42.71 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL 111 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~ 111 (307)
+++|..+||+.+++ +...+.++++.|...|++++... ..++ .+.+|+.|+.+.
T Consensus 50 ~~~t~~eLa~~l~~---~~~tvs~~v~~Le~~Glv~r~~~-------~~DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 50 GELPMSKIGERLMV---HPTSVTNTVDRLVRSGLVAKRPN-------PNDGRGTLATITDKGREVV 105 (147)
T ss_dssp GEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC-------C----CEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCEEEeec-------CCcCceeEEEECHHHHHHH
Confidence 68999999999999 68999999999999999998863 1233 488999998665
No 411
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=93.43 E-value=0.047 Score=41.40 Aligned_cols=68 Identities=15% Similarity=0.306 Sum_probs=49.2
Q ss_pred CCcccccccC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127 38 LSIPDIINKH-GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK 112 (307)
Q Consensus 38 lglfd~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~ 112 (307)
+.++..|... +++.|..+||+.+++ +...+.++++.|...|++++.... .+.-.-.+.+|+.|+.+..
T Consensus 40 ~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~----~D~R~~~i~LT~~G~~~~~ 108 (127)
T 2frh_A 40 FAVLTYISENKEKEYYLKDIINHLNY---KQPQVVKAVKILSQEDYFDKKRNE----HDERTVLILVNAQQRKKIE 108 (127)
T ss_dssp HHHHHHHHHTCCSEEEHHHHHHHSSS---HHHHHHHHHHHHHHTTSSCCBCCS----SSSCCCEEECCSHHHHHHH
T ss_pred HHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCC----CCCCeeEEEECHHHHHHHH
Confidence 3344455442 268999999999999 679999999999999999986421 0011235889999986653
No 412
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.43 E-value=0.023 Score=43.54 Aligned_cols=64 Identities=13% Similarity=0.126 Sum_probs=49.9
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~ 111 (307)
++.++..|... ++.|..+||+.+++ +...+.++++.|...|++++... ..++ .+.+|+.|+.+.
T Consensus 38 ~~~iL~~l~~~-~~~t~~ela~~l~~---s~~~vs~~l~~Le~~glv~r~~~-------~~d~R~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 38 QWRVIRILRQQ-GEMESYQLANQACI---LRPSMTGVLARLERDGIVRRWKA-------PKDQRRVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHHHHH-CSEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEE-------TTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecC-------CCCCCeeEEEECHHHHHHH
Confidence 45566666654 68999999999999 67999999999999999998742 1122 388999888655
No 413
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=93.26 E-value=0.57 Score=42.51 Aligned_cols=97 Identities=12% Similarity=0.183 Sum_probs=65.8
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCe-EEEecc-hHHHHhchhcCCCeEEEecCCCCC----C-------CCccEEEechh
Q 037127 198 NSLVDVGGATGTVAKAIAKAFPNLE-CTDFDL-PHVVNGLESDLANLKYVGGDMFEA----I-------PPADAVVLKWI 264 (307)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~----~-------p~~D~i~~~~v 264 (307)
-+++|+=||.|.++..+.++ +.+ +.++|. +..++..+..-+...++++|+.+- + +.+|+++..-.
T Consensus 3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 37999999999999999988 455 568998 555555554444677888888762 2 35899988776
Q ss_pred hccCC-------hhHHHHHHHHHH---HhccCCCCCcEEEEEeeecC
Q 037127 265 LHDWN-------DEECVKILKKCK---EAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 265 Lh~~~-------~~~~~~~L~~~~---~~L~p~~~gg~lli~e~~~~ 301 (307)
.-.|+ ++....++.... +.++| +++++|.|..
T Consensus 81 CQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P-----~~~v~ENV~g 122 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP-----LFFLAENVPG 122 (376)
T ss_dssp CCTTC-------CHHHHHHHHHHHHHHHHHCC-----SEEEEEECTT
T ss_pred CCCcccccCCCCCCchHHHHHHHHHHHHHhCC-----CEEEEecchH
Confidence 65554 122224444444 34455 7888988754
No 414
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=93.05 E-value=0.021 Score=46.19 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=48.7
Q ss_pred hCCcccccccCCCC--CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 37 ELSIPDIINKHGKP--TTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~~~~--~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++.++..|...+++ +|..+||+.+++ +...+.++++.|...|++++..... +.-.-.+.+|+.|+.+.
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~----DrR~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAAI---SGPSTSNRIVRLLEKGLIERREDER----DRRSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSC---CSGGGSSHHHHHHHHTSEECCC-----------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCEEecCCCC----CCCeeEEEECHHHHHHH
Confidence 44466667654333 999999999999 5789999999999999999874210 00012488999888655
No 415
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=93.00 E-value=0.018 Score=48.90 Aligned_cols=74 Identities=12% Similarity=0.130 Sum_probs=52.0
Q ss_pred HHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceee-eccCCCCCCCCCCCeeecChhc
Q 037127 29 SMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQ-QTLNSSRNNNDEEQGYVLTNAS 107 (307)
Q Consensus 29 ~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~-~~~~~~~~~~~~~~~y~~t~~s 107 (307)
+.+|..-.++.|+..|.. +|.|+.+||+.+|+ ....+.+.|+.|...|++.. ...+. ..+.-...|++++.+
T Consensus 6 lkaL~~~~R~~IL~~L~~--g~~s~~ELa~~lgl---S~stVs~hL~~Le~aGLV~~~~~~gr--~~GRp~~~Y~Lt~~~ 78 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTC--MECYFSLLSSKVSV---SSTAVAKHLKIMEREGVLQSYEKEER--FIGPTKKYYKISIAK 78 (232)
T ss_dssp HHHHTSHHHHHHHHHHTT--TTTCSSSSCTTCCC---CHHHHHHHHHHHHHTTSEEEEEECC-------CEEEEEECCCE
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeeecCC--CCCCccEEEEEccch
Confidence 344555556677777774 79999999999999 67899999999999999998 33100 000001248888876
Q ss_pred ch
Q 037127 108 KL 109 (307)
Q Consensus 108 ~~ 109 (307)
..
T Consensus 79 ~~ 80 (232)
T 2qlz_A 79 SY 80 (232)
T ss_dssp EE
T ss_pred hh
Confidence 53
No 416
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=92.82 E-value=0.041 Score=39.90 Aligned_cols=47 Identities=15% Similarity=0.403 Sum_probs=38.7
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
++.|+..|... ++.|+.+||+.+|+ +...+.+.|+.|...|++....
T Consensus 22 ~~~il~~l~~~-~~~s~~ela~~l~i---s~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 22 DVRIYSLLLER-GGMRVSEIARELDL---SARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence 34445555433 68999999999999 6899999999999999999875
No 417
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=92.35 E-value=0.085 Score=41.13 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL 111 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~ 111 (307)
+++|..+||+.+++ +...+.++++.|...|++....+ .++ .+.+|+.|+.+.
T Consensus 51 ~~~t~~eLa~~l~~---~~~tvsr~v~~Le~~glVr~~~~--------~DrR~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 51 IDLTMSELAARIGV---ERTTLTRNLEVMRRDGLVRVMAG--------ADARCKRIELTAKGRAAL 105 (148)
T ss_dssp ---CHHHHHHHHTC---CHHHHHHHHHHHHHTTSBC-------------------CCBCHHHHHHH
T ss_pred CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeCC--------CCCCeeEEEECHHHHHHH
Confidence 57999999999999 68999999999999999955432 122 488888888654
No 418
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=92.31 E-value=0.38 Score=41.83 Aligned_cols=141 Identities=14% Similarity=0.039 Sum_probs=87.7
Q ss_pred CCCccccc----cCCcHHHHHHHHHHH-hch-hhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHCCCCeEEEec
Q 037127 154 GKSFWEYA----GDEPKINNFFNEAMA-SDA-RLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAFPNLECTDFD 227 (307)
Q Consensus 154 g~~~~~~~----~~~~~~~~~f~~~m~-~~~-~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~D 227 (307)
|...|+-- .+..|......+.+. ... ......++..+.. + ....+||+=+|||.++.++++. .-+++.+|
T Consensus 45 G~G~Y~L~~~~a~ktgE~~~GI~rl~~~~~~~p~~l~~yf~~l~~-~-n~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE 120 (283)
T 2oo3_A 45 GRGIYDLKDKQSLKTEEYKEGINPVWLDRENLPSLFLEYISVIKQ-I-NLNSTLSYYPGSPYFAINQLRS--QDRLYLCE 120 (283)
T ss_dssp TTSEEETTCC----CCGGGGTHHHHHHTGGGSCGGGHHHHHHHHH-H-SSSSSCCEEECHHHHHHHHSCT--TSEEEEEC
T ss_pred CcCccCCCChHHhhcHHHHHHHHHHHhcccCCcHHHHHHHHHHHH-h-cCCCceeEeCCcHHHHHHHcCC--CCeEEEEe
Confidence 45666542 244555555555544 111 1112233333331 2 3456899999999999999994 56899999
Q ss_pred c-hHHHHhchh---cCCCeEEEecCCCCC----CC---CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 228 L-PHVVNGLES---DLANLKYVGGDMFEA----IP---PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 228 l-~~~~~~a~~---~~~rv~~~~~d~~~~----~p---~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
+ +..++..++ ..++++++..|.++. .| .+|+|++-=.-.. ..+..++++.+.+..+- .++|.++|+
T Consensus 121 ~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~--k~~~~~vl~~L~~~~~r-~~~Gi~v~W 197 (283)
T 2oo3_A 121 LHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYER--KEEYKEIPYAIKNAYSK-FSTGLYCVW 197 (283)
T ss_dssp CSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCS--TTHHHHHHHHHHHHHHH-CTTSEEEEE
T ss_pred CCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCC--CcHHHHHHHHHHHhCcc-CCCeEEEEE
Confidence 9 777777776 457899999997651 12 4899887644432 22445667666665431 127999998
Q ss_pred eeecC
Q 037127 297 DMMRE 301 (307)
Q Consensus 297 e~~~~ 301 (307)
=++..
T Consensus 198 YPi~~ 202 (283)
T 2oo3_A 198 YPVVN 202 (283)
T ss_dssp EEESS
T ss_pred Eeccc
Confidence 87765
No 419
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=92.26 E-value=0.043 Score=40.48 Aligned_cols=46 Identities=22% Similarity=0.388 Sum_probs=37.5
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (307)
+.|+..+...|.+.|..+||+.+|+ +...+++.|..|...|+++..
T Consensus 21 l~Il~~l~~~g~~~s~~eLa~~lgv---s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 21 IDVLRILLDKGTEMTDEEIANQLNI---KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHTTTS---CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 3455555323348999999999999 678999999999999999887
No 420
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=92.23 E-value=0.043 Score=45.56 Aligned_cols=68 Identities=10% Similarity=0.116 Sum_probs=50.1
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK 112 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~ 112 (307)
++.++..|... +++|..+||+.+++ +...+.++++.|...|++++..... +.-.-.+.+|+.|+.+..
T Consensus 50 q~~iL~~L~~~-~~~t~~eLa~~l~i---~~stvs~~l~~Le~~GlV~r~~~~~----DrR~~~l~LT~~G~~~~~ 117 (207)
T 2fxa_A 50 EHHILWIAYQL-NGASISEIAKFGVM---HVSTAFNFSKKLEERGYLRFSKRLN----DKRNTYVQLTEEGTEVFW 117 (207)
T ss_dssp HHHHHHHHHHH-TSEEHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEECC----------CEEEECHHHHHHHH
T ss_pred HHHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCCC----CCceEEEEECHHHHHHHH
Confidence 34455666554 68999999999999 6799999999999999999985210 000125899999986653
No 421
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=92.11 E-value=0.28 Score=42.88 Aligned_cols=92 Identities=16% Similarity=0.165 Sum_probs=59.6
Q ss_pred ccCCCeEEEecC------CchHHHHHHHHHCCC-CeEEEecchHHHHhchhcCCCeEEEecCCCCC-C-CCccEEEechh
Q 037127 194 FEGLNSLVDVGG------ATGTVAKAIAKAFPN-LECTDFDLPHVVNGLESDLANLKYVGGDMFEA-I-PPADAVVLKWI 264 (307)
Q Consensus 194 ~~~~~~vlDvGg------G~G~~~~~l~~~~p~-~~~~~~Dl~~~~~~a~~~~~rv~~~~~d~~~~-~-p~~D~i~~~~v 264 (307)
.+-..+|||+|+ -+|.+ .+.+..|. ..++.+|+.++...+ . .++.||+.+. . ..+|+|+.-+.
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda-----~-~~IqGD~~~~~~~~k~DLVISDMA 178 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA-----D-STLIGDCATVHTANKWDLIISDMY 178 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS-----S-EEEESCGGGEEESSCEEEEEECCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC-----C-eEEEccccccccCCCCCEEEecCC
Confidence 345789999995 67773 44556776 689999985543211 1 4589997662 2 35999977552
Q ss_pred ----hc---cC--ChhHHHHHHHHHHHhccCCCCCcEEEEE
Q 037127 265 ----LH---DW--NDEECVKILKKCKEAITSNSKIGKVIII 296 (307)
Q Consensus 265 ----Lh---~~--~~~~~~~~L~~~~~~L~p~~~gg~lli~ 296 (307)
-+ +- ...-+...|.=+.+.|+| ||.+++=
T Consensus 179 PNtTG~~D~d~~Rs~~L~ElALdfA~~~Lkp---GGsFvVK 216 (344)
T 3r24_A 179 DPRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVK 216 (344)
T ss_dssp CTTSCSSCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCcCCccccchhHHHHHHHHHHHHHHHhCcC---CCEEEEE
Confidence 11 11 122356677778889999 8887753
No 422
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=91.89 E-value=0.2 Score=38.98 Aligned_cols=59 Identities=20% Similarity=0.334 Sum_probs=45.1
Q ss_pred hCCcccccccCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecC
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSAL-----TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLT 104 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~-----g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t 104 (307)
+.-|++.|...+++.|++||.+.+ ++ +..-+.|.|+.|...|++.+.... ++..+|.++
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~~------~~~~~Y~~~ 87 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKALEGKFPNM---SVATVYNNLRVFRESGLVKELTYG------DASSRFDFV 87 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC---CHHHHHHHHHHHHHTTSEEEECCT------TSCCEEEEC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---ChhhHHHHHHHHHHCCCEEEEeeC------CCceEEECC
Confidence 445677776544799999999998 56 678999999999999999988631 223567754
No 423
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=91.82 E-value=0.03 Score=42.01 Aligned_cols=51 Identities=18% Similarity=0.341 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHcC----CCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCe---eecChhcchhh
Q 037127 49 KPTTLNDLVSALT----INPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQG---YVLTNASKLLL 111 (307)
Q Consensus 49 ~~~t~~eLA~~~g----~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~---y~~t~~s~~l~ 111 (307)
++.|..+||+.++ + ....+.++|+.|...|++++... +++ +.+|+.|+.+.
T Consensus 23 ~~~t~~ela~~l~~~~~~---s~~tv~~~l~~L~~~Glv~r~~~---------~rr~~~~~lT~~g~~~~ 80 (123)
T 1okr_A 23 KYASANNIIEEIQMQKDW---SPKTIRTLITRLYKKGFIDRKKD---------NKIFQYYSLVEESDIKY 80 (123)
T ss_dssp SSEEHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHTSEEEEEE---------TTEEEEEESSCHHHHHH
T ss_pred CCcCHHHHHHHHhccCCC---cHhhHHHHHHHHHHCCCeEEEec---------CCeEEEEEecCHHHHHH
Confidence 6899999999999 5 47899999999999999999862 222 46788777554
No 424
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=91.78 E-value=0.18 Score=34.41 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=36.2
Q ss_pred cccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 42 DIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 42 d~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+.|+. |+..|+.+||.++|+ +-.-+.|.|..|...|++...+
T Consensus 22 ~~L~~-~~~~Ta~~IAkkLg~---sK~~vNr~LY~L~kkG~V~~~~ 63 (75)
T 1sfu_A 22 LSLNT-NDYTTAISLSNRLKI---NKKKINQQLYKLQKEDTVKMVP 63 (75)
T ss_dssp HTSCT-TCEECHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HhCCC-CcchHHHHHHHHHCC---CHHHHHHHHHHHHHCCCEecCC
Confidence 36665 356999999999999 5678999999999999999886
No 425
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=91.64 E-value=0.13 Score=39.33 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=40.5
Q ss_pred HhCCcccccccCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeecc
Q 037127 36 VELSIPDIINKHGKPTTLNDLVSAL-----TINPSKTRCVYRLMRILIHSGFFAQQTL 88 (307)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~-----g~~~~~~~~l~r~L~~L~~~g~l~~~~~ 88 (307)
-+.-|++.|...+++.|++||.+.+ ++ +..-+.|.|+.|...|++.+...
T Consensus 12 qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i---s~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 12 QRAAISTLLETLDDFRSAQELHDELRRRGENI---GLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHTTTSEEEEEC
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCEEEEEe
Confidence 3445566665444799999999998 67 67899999999999999998863
No 426
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=91.57 E-value=0.071 Score=36.99 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=37.3
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCC-CCcccHHHHHHHHHhCCceeeec
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINP-SKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~-~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
..|++.|... ++.|+.||++.++..+ -+...+.++|+.|...|++.+..
T Consensus 12 ~~vL~~L~~~-~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 12 LEVMKVIWKH-SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHTS-SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHcC-CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 3344555543 6899999999997310 04688999999999999999986
No 427
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=91.24 E-value=0.14 Score=41.92 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=43.6
Q ss_pred HHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127 30 MSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (307)
Q Consensus 30 ~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (307)
.++....+..|+..|.. ++.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 15 k~l~d~~~~~IL~~L~~--~~~s~~eLA~~lgl---S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 15 KVMLEDTRRKILKLLRN--KEMTISQLSEILGK---TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHSHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 34444556677788873 79999999999999 679999999999999999987
No 428
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=91.15 E-value=0.057 Score=39.35 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=39.6
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCC-CCcccHHHHHHHHHhCCceeeec
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINP-SKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~-~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
++.|+..|... ++.|+.||++.++..+ -....+.++|+.|...|++.+..
T Consensus 37 e~~VL~~L~~~-~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 37 ELIVMRVIWSL-GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp CSHHHHHHHHH-SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 45566677654 6899999999998520 04678999999999999999986
No 429
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=91.14 E-value=0.31 Score=41.77 Aligned_cols=41 Identities=20% Similarity=0.128 Sum_probs=34.3
Q ss_pred cCCCeEEEecCCchHHHHHHHHHCCCCeEEEecc-hHHHHhchh
Q 037127 195 EGLNSLVDVGGATGTVAKAIAKAFPNLECTDFDL-PHVVNGLES 237 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~ 237 (307)
.....|||..||+|..+.+..+. +-+++++|+ |..++.+++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~ 252 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANF 252 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 45678999999999999999887 568999999 777776654
No 430
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=91.06 E-value=0.16 Score=38.67 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=32.6
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 50 PTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 50 ~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
..|..+||+.+|+ ++..+.+.++.|...|++.+..
T Consensus 51 ~ps~~~LA~~l~~---s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 51 FPTPAELAERMTV---SAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp SCCHHHHHHTSSS---CHHHHHHHHHHHHHTTSSEECC
T ss_pred CCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 4799999999999 7899999999999999999975
No 431
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=91.01 E-value=0.16 Score=36.58 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
++.|..|||+.+|+ +...+.+.|+.|...|++.+..
T Consensus 35 ~~~t~~ela~~l~i---s~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 35 KPITSEELADIFKL---SKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence 68999999999999 6799999999999999999875
No 432
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=90.97 E-value=1.1 Score=40.89 Aligned_cols=68 Identities=18% Similarity=0.280 Sum_probs=42.4
Q ss_pred CcHHHHHHHHHHHhchhhhHHHHHHhccccccCCCeEEEecCCchHHHHHHHHHC-------CCCeEEEecchHHHHhch
Q 037127 164 EPKINNFFNEAMASDARLATRVVIHKCKNVFEGLNSLVDVGGATGTVAKAIAKAF-------PNLECTDFDLPHVVNGLE 236 (307)
Q Consensus 164 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~-------p~~~~~~~Dl~~~~~~a~ 236 (307)
.|+....|.+..+.+. .+.+ .... .+..-.|+++|+|+|.++..+++.. ..++++++|.++.+...+
T Consensus 54 apeis~~FGe~la~~~---~~~w-~~~g--~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q 127 (387)
T 1zkd_A 54 SPEISQMFGELLGLWS---ASVW-KAAD--EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQ 127 (387)
T ss_dssp HHHHCHHHHHHHHHHH---HHHH-HHTT--CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHH
T ss_pred CCchHHHHHHHHHHHH---HHHH-HHcC--CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHH
Confidence 3566666766555332 2211 1222 2344579999999999999887652 345899999965555443
Q ss_pred h
Q 037127 237 S 237 (307)
Q Consensus 237 ~ 237 (307)
+
T Consensus 128 ~ 128 (387)
T 1zkd_A 128 Q 128 (387)
T ss_dssp H
T ss_pred H
Confidence 3
No 433
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=90.81 E-value=0.12 Score=40.26 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=39.1
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+..|+..|..+ ++.|..|||+.+|+ ++..+.+.++.|...|++.+..
T Consensus 9 ~~~iL~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 55 (150)
T 2w25_A 9 DRILVRELAAD-GRATLSELATRAGL---SVSAVQSRVRRLESRGVVQGYS 55 (150)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEE
Confidence 34456666654 78999999999999 6799999999999999998653
No 434
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=90.81 E-value=0.12 Score=39.97 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=38.7
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (307)
..|++.|..+ ++.|..|||+.+|+ ++..+.+.++.|...|++.+.
T Consensus 8 ~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 8 LNIIEELKKD-SRLSMRELGRKIKL---SPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHC-SCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence 3466667654 78999999999999 679999999999999999875
No 435
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=90.80 E-value=0.1 Score=40.63 Aligned_cols=46 Identities=15% Similarity=0.266 Sum_probs=39.5
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (307)
+..|+..|..+ ++.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 5 ~~~il~~L~~~-~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 5 DLRILKILQYN-AKYSLDEIAREIRI---PKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHTTC-TTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEE
Confidence 44567777754 68999999999999 689999999999999999874
No 436
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=90.76 E-value=0.1 Score=44.72 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=51.2
Q ss_pred hCCcccccccCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhhc
Q 037127 37 ELSIPDIINKHG-KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLLK 112 (307)
Q Consensus 37 ~lglfd~L~~~~-~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~~ 112 (307)
++.++..|...+ ++.|..+||+.+++ +...+.++++-|...|++++... ..++ ...+|+.|+.+..
T Consensus 160 q~~vL~~L~~~~~~~~t~~eLa~~l~i---~~~tvt~~v~rLe~~GlV~R~~~-------~~DrR~~~i~LT~~G~~~~~ 229 (250)
T 1p4x_A 160 EFTILAIITSQNKNIVLLKDLIETIHH---KYPQTVRALNNLKKQGYLIKERS-------TEDERKILIHMDDAQQDHAE 229 (250)
T ss_dssp HHHHHHHHHTTTTCCEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEEEEC-------SSSTTCEEEECCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeCC-------CCCCCeEEEEECHHHHHHHH
Confidence 444566666543 35999999999999 68999999999999999999863 1233 4888999986653
No 437
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=90.73 E-value=0.23 Score=35.92 Aligned_cols=53 Identities=13% Similarity=0.285 Sum_probs=40.2
Q ss_pred HHHHHHhCCccc-ccccCCCCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 31 SLKCAVELSIPD-IINKHGKPT-TLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 31 ~L~~a~~lglfd-~L~~~~~~~-t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
.+...++..|.+ .+.. |..+ |..+||+.+|+ ....+++.|..|...|+++...
T Consensus 15 ~l~~~i~~~I~~~~l~~-g~~lps~~eLa~~~~v---Sr~tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 15 DVATHFRTLIKSGELAP-GDTLPSVADIRAQFGV---AAKTVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp HHHHHHHHHTTTTSCCT-TSBCCCHHHHHHHSSS---CTTHHHHHTTTTTTSSCCEEET
T ss_pred HHHHHHHHHHHhCCCCC-cCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence 344444555555 3343 3566 99999999999 5789999999999999999875
No 438
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=90.42 E-value=0.59 Score=35.57 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
++.|+.+||+.+|+ +...+.++++.|...|++++..
T Consensus 40 ~~~t~~ela~~l~~---~~stvs~~l~~L~~~G~v~r~~ 75 (152)
T 1ku9_A 40 KPLTISDIMEELKI---SKGNVSMSLKKLEELGFVRKVW 75 (152)
T ss_dssp SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 68999999999999 6789999999999999999874
No 439
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=90.26 E-value=0.45 Score=43.70 Aligned_cols=54 Identities=11% Similarity=0.136 Sum_probs=41.3
Q ss_pred cCCCeEEEecCCchHHHHHHH-HHCCC-CeEEEecc-hHHHHhchh---c-----C-CCeEEEecC
Q 037127 195 EGLNSLVDVGGATGTVAKAIA-KAFPN-LECTDFDL-PHVVNGLES---D-----L-ANLKYVGGD 248 (307)
Q Consensus 195 ~~~~~vlDvGgG~G~~~~~l~-~~~p~-~~~~~~Dl-~~~~~~a~~---~-----~-~rv~~~~~d 248 (307)
.+...|+|||++.|.++..++ +..+. .+++.++. |...+..++ . . +++++++.-
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~a 290 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCG 290 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSE
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeE
Confidence 567899999999999999988 66765 79999998 776666654 2 3 566666543
No 440
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=90.25 E-value=0.14 Score=40.42 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=38.5
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (307)
..|+..|..+ ++.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 13 ~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 13 IKILQVLQEN-GRLTNVELSERVAL---SPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEeee
Confidence 3456666654 78999999999999 679999999999999999875
No 441
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=90.11 E-value=0.32 Score=37.29 Aligned_cols=59 Identities=15% Similarity=0.356 Sum_probs=44.2
Q ss_pred hCCcccccccCC-CCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecC
Q 037127 37 ELSIPDIINKHG-KPTTLNDLVSAL-----TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLT 104 (307)
Q Consensus 37 ~lglfd~L~~~~-~~~t~~eLA~~~-----g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t 104 (307)
+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|...|++.+.... ++..+|.++
T Consensus 20 R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~~------~~~~~Y~~~ 84 (136)
T 1mzb_A 20 RVKILQMLDSAEQRHMSAEDVYKALMEAGEDV---GLATVYRVLTQFEAAGLVVRHNFD------GGHAVFELA 84 (136)
T ss_dssp HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEECSS------SSSCEEEES
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC---CHHHHHHHHHHHHHCCcEEEEEeC------CCceEEEeC
Confidence 444667776544 689999999998 56 678999999999999999988631 223568753
No 442
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=89.95 E-value=0.45 Score=30.44 Aligned_cols=44 Identities=11% Similarity=0.176 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChh
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNA 106 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~ 106 (307)
.+.|+.|+|...|+ +.+..+.-|+.|...|-|.+.. .+|++.|-
T Consensus 17 QGMTaGEVAA~f~w---~Le~ar~aLeqLf~~G~LRKRs-----------SRYrlkph 60 (68)
T 3i71_A 17 QGMTAGEVAAHFGW---PLEKARNALEQLFSAGTLRKRS-----------SRYRLKPH 60 (68)
T ss_dssp TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-----------CEEEECC-
T ss_pred ccccHHHHHHHhCC---cHHHHHHHHHHHHhcchhhhhc-----------cccccCcc
Confidence 57999999999999 6889999999999999999984 78988764
No 443
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=89.67 E-value=0.36 Score=40.49 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=43.1
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127 50 PTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK 112 (307)
Q Consensus 50 ~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~ 112 (307)
+.+..+||+.+++ +...+.+.++.|...|++++.. ...+.+|+.|+.+..
T Consensus 24 ~~~~~~la~~l~v---s~~tvs~~l~~Le~~GlV~r~~----------~~~v~LT~~G~~~~~ 73 (226)
T 2qq9_A 24 TPLRARIAERLEQ---SGPTVSQTVARMERDGLVVVAS----------DRSLQMTPTGRTLAT 73 (226)
T ss_dssp CCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT----------TSBEEECHHHHHHHH
T ss_pred CccHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeC----------CCCeEECHHHHHHHH
Confidence 4466999999999 6789999999999999999986 477999999986553
No 444
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=89.65 E-value=0.16 Score=41.60 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=33.4
Q ss_pred cCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 46 KHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 46 ~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+.|.|.|..|||+.+|++ ...+.+.|+.|...|++.+..
T Consensus 20 ~~g~~~s~~eia~~lgl~---~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 20 KNGYPPSVREIARRFRIT---PRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp HHSSCCCHHHHHHHHTSC---HHHHHHHHHHHHHTTSEECC-
T ss_pred HhCCCCCHHHHHHHcCCC---cHHHHHHHHHHHHCCCEEecC
Confidence 334689999999999994 568999999999999999874
No 445
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=89.63 E-value=0.2 Score=32.01 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=40.1
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (307)
..|++.|..+||-+.++..|++.|+ +.+-+..+|+.|...|++..+
T Consensus 13 ~~lL~yIr~sGGildI~~~a~kygV---~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSKVYGV---EKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCEEeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeecc
Confidence 3467778888899999999999999 678899999999999998764
No 446
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=89.53 E-value=0.24 Score=41.61 Aligned_cols=54 Identities=19% Similarity=0.173 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK 112 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~ 112 (307)
++.|+.++|+.+++ +...+.+.++.|...|+|++... .-...+.+|+.|+.+..
T Consensus 26 ~~~s~s~aA~~L~i---sq~avSr~I~~LE~~~L~~R~~~-------~R~~~v~LT~~G~~l~~ 79 (230)
T 3cta_A 26 AYLTSSKLADMLGI---SQQSASRIIIDLEKNGYITRTVT-------KRGQILNITEKGLDVLY 79 (230)
T ss_dssp EECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEEE-------TTEEEEEECHHHHHHHH
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEEc-------CCeEEEEECHHHHHHHH
Confidence 57999999999999 68999999999999999999831 01257999999987653
No 447
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=89.44 E-value=0.27 Score=37.91 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=45.5
Q ss_pred HhCCcccccccCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecCh
Q 037127 36 VELSIPDIINKHGKPTTLNDLVSAL-----TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTN 105 (307)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~-----g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~ 105 (307)
-+.-|++.|...+++.|++||.+.+ ++ +..-+.|.|+.|...|++.+... +++..+|.+..
T Consensus 15 qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~------~~g~~~Y~~~~ 80 (139)
T 3mwm_A 15 QRAAVSAALQEVEEFRSAQELHDMLKHKGDAV---GLTTVYRTLQSLADAGEVDVLRT------AEGESVYRRCS 80 (139)
T ss_dssp HHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSSEEEEC------TTSCEEEECCS
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHCCCEEEEEc------CCCceEEEECC
Confidence 3455666666545799999999988 45 67899999999999999998763 12345677653
No 448
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=89.44 E-value=0.16 Score=39.72 Aligned_cols=45 Identities=9% Similarity=0.168 Sum_probs=38.7
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (307)
..|+..|..+ ++.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 11 ~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 11 RGILEALMGN-ARTAYAELAKQFGV---SPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHC-TTSCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHcCCcceE
Confidence 3456667664 78999999999999 679999999999999999975
No 449
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=89.41 E-value=0.46 Score=35.44 Aligned_cols=68 Identities=25% Similarity=0.353 Sum_probs=48.7
Q ss_pred HhCCcccccccCCCCCCHHHHHHHcC--------CCCCCc-ccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChh
Q 037127 36 VELSIPDIINKHGKPTTLNDLVSALT--------INPSKT-RCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNA 106 (307)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~g--------~~~~~~-~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~ 106 (307)
+++-|+..|.. +|.+.-+|++.+. + ++ ..+.+.|+.|...|+++...... ++...-.|++|+.
T Consensus 14 ~~~~IL~~L~~--~~~~gyel~~~l~~~g~~~~~i---s~~~tly~~L~~Le~~GlI~~~~~~~---~~~~r~~Y~LT~~ 85 (118)
T 2esh_A 14 LASTILLLVAE--KPSHGYELAERLAEFGIEIPGI---GHMGNIYRVLADLEESGFLSTEWDTT---VSPPRKIYRITPQ 85 (118)
T ss_dssp HHHHHHHHHHH--SCBCHHHHHHHHHTTCCSSTTC---CCCCCHHHHHHHHHHTTSEEEEEECS---SSSCEEEEEECHH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHhCCcccCC---CCcchHHHHHHHHHHCCCeEEEeecC---CCCCceEEEEChH
Confidence 34445555554 6899999999983 4 67 89999999999999999875210 0011235999999
Q ss_pred cchhh
Q 037127 107 SKLLL 111 (307)
Q Consensus 107 s~~l~ 111 (307)
|+.+.
T Consensus 86 G~~~l 90 (118)
T 2esh_A 86 GKLYL 90 (118)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99654
No 450
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=89.40 E-value=1.3 Score=39.48 Aligned_cols=102 Identities=6% Similarity=0.080 Sum_probs=62.7
Q ss_pred CeEEEecCCchHHHHHHHHHCCCC-eEEEecc-hHHHHhchhcCCCeEEEecCCCCC----CC--CccEEEechhhccCC
Q 037127 198 NSLVDVGGATGTVAKAIAKAFPNL-ECTDFDL-PHVVNGLESDLANLKYVGGDMFEA----IP--PADAVVLKWILHDWN 269 (307)
Q Consensus 198 ~~vlDvGgG~G~~~~~l~~~~p~~-~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~----~p--~~D~i~~~~vLh~~~ 269 (307)
.+++|+-||.|.+...+.++.-.. .+.++|. +..++..+...+...++.+|+.+- ++ .+|+++..-....|+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS 82 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT 82 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcchh
Confidence 479999999999999999884222 4788898 666666665334455778898762 23 589999887655443
Q ss_pred hh--------HHHHHHHHHHHhccCCCCC--cEEEEEeeecC
Q 037127 270 DE--------ECVKILKKCKEAITSNSKI--GKVIIIDMMRE 301 (307)
Q Consensus 270 ~~--------~~~~~L~~~~~~L~p~~~g--g~lli~e~~~~ 301 (307)
.. ..-.++.++.+.++.- . -+++++|.|..
T Consensus 83 ~ag~~~g~~d~r~~l~~~~~~~i~~~--~~~P~~~~~ENV~~ 122 (343)
T 1g55_A 83 RIGRQGDMTDSRTNSFLHILDILPRL--QKLPKYILLENVKG 122 (343)
T ss_dssp -------------CHHHHHHHHGGGC--SSCCSEEEEEEETT
T ss_pred hcCCcCCccCccchHHHHHHHHHHHh--cCCCCEEEEeCCcc
Confidence 21 1123455444444321 1 26888887753
No 451
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=89.34 E-value=0.29 Score=41.15 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=41.9
Q ss_pred CCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 51 TTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 51 ~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
.+..+||+.+++ +...+.+.|+.|...|++++.. +..+.+|+.|+.+.
T Consensus 25 ~~~~~La~~l~v---s~~tvs~~l~~Le~~GlV~r~~----------~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 25 PLRARIAERLDQ---SGPTVSQTVSRMERDGLLRVAG----------DRHLELTEKGRALA 72 (230)
T ss_dssp CCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT----------TSCEEECHHHHHHH
T ss_pred CcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC----------CccEEECHHHHHHH
Confidence 345999999999 6789999999999999999986 46899999998654
No 452
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=89.20 E-value=0.17 Score=39.39 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=39.2
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (307)
+..|+..|..+ ++.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 11 d~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 11 DMQLVKILSEN-SRLTYRELADILNT---TRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHTTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 34566677664 78999999999999 679999999999999999865
No 453
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=88.83 E-value=0.21 Score=39.98 Aligned_cols=46 Identities=15% Similarity=0.227 Sum_probs=39.1
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (307)
+..|+..|..+ ++.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 19 d~~IL~~L~~~-~~~s~~eLA~~lgl---S~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 19 DRNILRLLKKD-ARLTISELSEQLKK---PESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEee
Confidence 34566777764 68999999999999 679999999999999999865
No 454
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=88.82 E-value=0.14 Score=40.01 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=38.9
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (307)
+..|+..|..+ ++.|..+||+.+|+ ++..+.+.++.|...|++...
T Consensus 9 ~~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 9 DKKIIKILQND-GKAPLREISKITGL---AESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHCS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence 33456667654 78999999999999 679999999999999999865
No 455
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=88.69 E-value=0.19 Score=39.83 Aligned_cols=46 Identities=15% Similarity=0.313 Sum_probs=39.9
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (307)
+..|++.|..+ +++|..+||+++|+ ++..+++-++.|...|++...
T Consensus 5 d~~il~~L~~~-~~~s~~~la~~lg~---s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 5 DRKILRILQED-STLAVADLAKKVGL---STTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHTTC-SCSCHHHHHHHHTC---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeec
Confidence 44577788764 79999999999999 679999999999999999864
No 456
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=88.65 E-value=0.32 Score=39.52 Aligned_cols=57 Identities=21% Similarity=0.388 Sum_probs=44.5
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCc-eeeeccCCCCCCCCCCCeeecChhc
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGF-FAQQTLNSSRNNNDEEQGYVLTNAS 107 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~-l~~~~~~~~~~~~~~~~~y~~t~~s 107 (307)
...|++.|...++++|+.|||+.+|+ ..+.++|-++.|...|+ +... .+.|.+.+..
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~v---S~~Ti~rdi~~L~~~G~~I~~~-----------~~Gy~l~~~~ 80 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSV---SRQVIVQDIAYLRSLGYNIVAT-----------PRGYVLAGGK 80 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTS---CHHHHHHHHHHHHHHTCCCEEE-----------TTEEECCTTT
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE-----------CCEEEECCcc
Confidence 44566677643467999999999999 68999999999999999 7654 3668777543
No 457
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=88.64 E-value=0.44 Score=39.19 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
++++..+||+.+++ .+..++..++.|...|+++..+ +...+|+.|+.++
T Consensus 29 ~~V~~~~LA~~Lgv---S~~SV~~~lkkL~e~GLV~~~~-----------~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 29 EPLGRKQISERLEL---GEGSVRTLLRKLSHLDIIRSKQ-----------RGHFLTLKGKEIR 77 (200)
T ss_dssp SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-------------CEEECHHHHHHH
T ss_pred CCccHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEeC-----------CCeEECHHHHHHH
Confidence 58999999999999 6799999999999999999884 7899999998654
No 458
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=88.36 E-value=0.31 Score=38.13 Aligned_cols=52 Identities=12% Similarity=0.307 Sum_probs=41.8
Q ss_pred HHHhCCcccccccCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeecc
Q 037127 34 CAVELSIPDIINKHGKPTTLNDLVSAL-----TINPSKTRCVYRLMRILIHSGFFAQQTL 88 (307)
Q Consensus 34 ~a~~lglfd~L~~~~~~~t~~eLA~~~-----g~~~~~~~~l~r~L~~L~~~g~l~~~~~ 88 (307)
+.-+.-|++.|...+++.|++||.+.+ ++ +..-+.|.|+.|...|++.+...
T Consensus 26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~ 82 (150)
T 2xig_A 26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNT---SISSVYRILNFLEKENFISVLET 82 (150)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCcEEEEEe
Confidence 334555677776545799999999998 56 67899999999999999998763
No 459
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=87.87 E-value=0.2 Score=40.13 Aligned_cols=47 Identities=15% Similarity=0.252 Sum_probs=40.1
Q ss_pred HhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127 36 VELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (307)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (307)
.+..|+..|..+ +..|..|||+++|+ ++..+.+.|+.|...|++...
T Consensus 28 ~d~~IL~~L~~~-~~~s~~eLA~~lgl---S~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 28 IDKKIIKILQND-GKAPLREISKITGL---AESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEee
Confidence 345677777764 78999999999999 679999999999999999864
No 460
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=87.77 E-value=0.18 Score=38.72 Aligned_cols=44 Identities=20% Similarity=0.331 Sum_probs=37.2
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeee
Q 037127 39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQ 86 (307)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~ 86 (307)
.|+..|..+ ++.|..|||+.+|+ ++..+.+.++.|...|++...
T Consensus 8 ~il~~L~~~-~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 8 IILEILEKD-ARTPFTEIAKKLGI---SETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEecc
Confidence 455566553 68999999999999 679999999999999999865
No 461
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=87.33 E-value=2.7 Score=37.22 Aligned_cols=95 Identities=13% Similarity=0.124 Sum_probs=60.8
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCe-EEEecc-hHHHHhchh-cCCCeEEEecCCCC----CCCCccEEEechhhccCC
Q 037127 197 LNSLVDVGGATGTVAKAIAKAFPNLE-CTDFDL-PHVVNGLES-DLANLKYVGGDMFE----AIPPADAVVLKWILHDWN 269 (307)
Q Consensus 197 ~~~vlDvGgG~G~~~~~l~~~~p~~~-~~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~----~~p~~D~i~~~~vLh~~~ 269 (307)
..+++|+-||.|.++..+.++ +.+ +..+|. +..++..+. ..... .+|+.+ ..|.+|+++..-....|+
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~~---~~Di~~~~~~~~~~~D~l~~gpPCQ~fS 85 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEKP---EGDITQVNEKTIPDHDILCAGFPCQAFS 85 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCCC---BSCGGGSCGGGSCCCSEEEEECCCTTTC
T ss_pred CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCCC---cCCHHHcCHhhCCCCCEEEECCCCCCcc
Confidence 468999999999999999887 454 667888 555555544 22211 578776 245789998886555443
Q ss_pred h--------hHHHHHHHH---HHHhccCCCCCcEEEEEeeecC
Q 037127 270 D--------EECVKILKK---CKEAITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 270 ~--------~~~~~~L~~---~~~~L~p~~~gg~lli~e~~~~ 301 (307)
. +..-.++.. +.+.++| +++++|.|..
T Consensus 86 ~ag~~~g~~d~r~~L~~~~~r~i~~~~P-----~~~~~ENV~g 123 (327)
T 2c7p_A 86 ISGKQKGFEDSRGTLFFDIARIVREKKP-----KVVFMENVKN 123 (327)
T ss_dssp TTSCCCGGGSTTSCHHHHHHHHHHHHCC-----SEEEEEEEGG
T ss_pred hhcccCCCcchhhHHHHHHHHHHHhccC-----cEEEEeCcHH
Confidence 1 111123333 3344566 7889998754
No 462
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=87.17 E-value=0.25 Score=37.87 Aligned_cols=47 Identities=17% Similarity=0.250 Sum_probs=37.7
Q ss_pred CCcccccccCCCCCCHHHHHHHcC----CCCCCcccHHHHHHHHHhCCceeeec
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALT----INPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g----~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+.|+..|...+++.|..+|++.++ + +...+.++|+-|...|++.+..
T Consensus 12 ~~vL~~L~~~~~~~t~~el~~~l~~~~~~---~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 12 RAVMDHLWSRTEPQTVRQVHEALSARRDL---AYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHTCSSCEEHHHHHHHHTTTCCC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHhccCCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence 334445544226899999999998 6 5789999999999999999986
No 463
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=87.00 E-value=0.35 Score=37.23 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
...|.++||+++|+ ++..+.++|..|...|++....
T Consensus 50 ~~ps~~~LA~~~~~---s~~~v~~~L~~L~~KGlI~i~~ 85 (135)
T 2v79_A 50 YFPTPNQLQEGMSI---SVEECTNRLRMFIQKGFLFIEE 85 (135)
T ss_dssp CSCCHHHHHTTSSS---CHHHHHHHHHHHHHHTSCEEEE
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 46899999999999 7899999999999999999853
No 464
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=86.64 E-value=0.77 Score=33.83 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=42.1
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 50 PTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 50 ~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
..|+..|.+.+|+ +.+-++..+.+|...|+-......+.|+| .|.|+++.=|.
T Consensus 33 ~~nvp~L~~~TGm---PRRTiQd~I~aL~elgI~~~FvQ~G~R~n---~GyY~I~dWG~ 85 (117)
T 3ke2_A 33 RHNLLSLGKLTGM---PRRTLQDAIASFADIGIEVEFVQDGERHN---AGYYRIRTWGP 85 (117)
T ss_dssp CCCHHHHHHHHCC---CHHHHHHHHHTGGGGTCEEEEECCTTCCS---CCEEEEEECTT
T ss_pred CCCHHHHHHHHCC---CHhHHHHHHHHhhhCCeEEEEEeccccCC---CccEEEeecCc
Confidence 3499999999999 68999999999999999887553334444 68899886443
No 465
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=86.46 E-value=0.46 Score=43.03 Aligned_cols=74 Identities=12% Similarity=0.201 Sum_probs=49.7
Q ss_pred HHHHHHHHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 29 SMSLKCAVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 29 ~~~L~~a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
.++++..-+..|++.|. + +++|..|||+.+|+ ....+.++++.|...|++.+.+... ...+.-...|++++...
T Consensus 14 ~~~~~~~~~~~il~~l~-~-~~~sr~~la~~~gl---s~~tv~~~v~~L~~~gli~~~~~~~-~~~GR~~~~l~~~~~~~ 87 (380)
T 2hoe_A 14 PKSVRAENISRILKRIM-K-SPVSRVELAEELGL---TKTTVGEIAKIFLEKGIVVEEKDSP-KGVGRPTKSLKISPNCA 87 (380)
T ss_dssp --------CCCSHHHHH-H-SCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEECCC-----CCCEEEEECGGGC
T ss_pred chhHHHHHHHHHHHHHH-c-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeecCCC-CCCCCCceEEEEccCCC
Confidence 45667777888999998 5 79999999999999 5789999999999999999875311 01111122477777553
No 466
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=85.72 E-value=0.47 Score=35.41 Aligned_cols=70 Identities=20% Similarity=0.337 Sum_probs=48.2
Q ss_pred HhCCcccccccCCCCCCHHHHHHHcC------CCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcch
Q 037127 36 VELSIPDIINKHGKPTTLNDLVSALT------INPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKL 109 (307)
Q Consensus 36 ~~lglfd~L~~~~~~~t~~eLA~~~g------~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~ 109 (307)
+++-|+..|.. +|.+.-+|++.+. + ++..+.+.|+.|...|+++...... .++...-.|++|+.|+.
T Consensus 15 l~~~IL~lL~~--~p~~gyel~~~l~~~~~~~i---~~gtly~~L~~Le~~GlI~~~~~~~--~~~~~rk~Y~lT~~G~~ 87 (117)
T 3elk_A 15 ITLYILKELVK--RPMHGYELQKSMFETTGQAL---PQGSIYILLKTMKERGFVISESSVN--EKGQQLTVYHITDAGKK 87 (117)
T ss_dssp HHHHHHHHHHH--SCEEHHHHHHHHHHHHSCCC---CTTHHHHHHHHHHHHTSEEEEEEEC---CCCEEEEEEECHHHHH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHHhCCCC---CcchHHHHHHHHHHCCCEEEEeeec--CCCCCceEEEECHHHHH
Confidence 34444455554 7888888888876 6 5689999999999999999764200 01111236999999995
Q ss_pred hhc
Q 037127 110 LLK 112 (307)
Q Consensus 110 l~~ 112 (307)
...
T Consensus 88 ~l~ 90 (117)
T 3elk_A 88 FLC 90 (117)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 467
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=85.51 E-value=0.43 Score=40.74 Aligned_cols=64 Identities=8% Similarity=0.200 Sum_probs=49.3
Q ss_pred CCcccccccCC-CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127 38 LSIPDIINKHG-KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL 111 (307)
Q Consensus 38 lglfd~L~~~~-~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~ 111 (307)
+.++..|.+.+ ++.|..+||+.+++ +...+.++++-|...|++.+... ..+. ...+|+.|+.+.
T Consensus 37 ~~vL~~L~~~~~~~~~~~el~~~l~~---~~~t~t~~l~rLe~~G~i~R~~~-------~~DrR~~~i~LT~~G~~~~ 104 (250)
T 1p4x_A 37 FILLTYLFHQQENTLPFKKIVSDLCY---KQSDLVQHIKVLVKHSYISKVRS-------KIDERNTYISISEEQREKI 104 (250)
T ss_dssp HHHHHHHHSCSCSEEEHHHHHHHSSS---CGGGTHHHHHHHHHTTSCEEEEC-------SSSTTSEEEECCHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEecCC-------CCCCCeEEEEECHHHHHHH
Confidence 34455565432 57999999999999 68999999999999999998863 1233 478999988654
No 468
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=85.24 E-value=0.17 Score=45.45 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhhc
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLLK 112 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~~ 112 (307)
+..++..|... +++|..|||+.+++ ++..++|.|+.|...|+++... ....+|+.|+.+..
T Consensus 22 ~~~iL~~l~~~-~~~t~~eLa~~l~v---s~~Tv~r~l~~Le~~Glv~~~~-----------~gi~LT~~G~~~~~ 82 (345)
T 2o0m_A 22 RFQILRNIYWM-QPIGRRSLSETMGI---TERVLRTETDVLKQLNLIEPSK-----------SGMTLTERGLEVYQ 82 (345)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe-----------cceEEcHHHHHHHH
Confidence 56677777765 78999999999999 6799999999999999998553 45888888886654
No 469
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=85.15 E-value=0.82 Score=34.09 Aligned_cols=64 Identities=19% Similarity=0.233 Sum_probs=45.5
Q ss_pred ccccccCCCCCCHHHHHHHc------CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 41 PDIINKHGKPTTLNDLVSAL------TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 41 fd~L~~~~~~~t~~eLA~~~------g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
+..|.. +|.+--+|++.+ ++ ++..+...|+.|...|+++...... .++...-.|++|+.|+...
T Consensus 17 L~lL~~--~p~~Gyei~~~l~~~g~~~i---s~gtlY~~L~rLe~~GlI~~~~~~~--~~g~~rk~Y~LT~~G~~~l 86 (117)
T 4esf_A 17 LEIISR--RETYGYEITRHLNDLGFTEV---VEGTVYTILVRLEKKKLVNIEKKPS--DMGPPRKFYSLNEAGRQEL 86 (117)
T ss_dssp HHHHHH--SCBCHHHHHHHHHHHTCTTC---CHHHHHHHHHHHHHTTCEEEEEEC-------CEEEEEECHHHHHHH
T ss_pred HHHHHc--CCCCHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHCCCEEEEeecC--CCCCCceEEEECHHHHHHH
Confidence 334444 789999999887 56 6899999999999999999874210 0011123599999999554
No 470
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=84.46 E-value=2.3 Score=36.36 Aligned_cols=95 Identities=18% Similarity=0.149 Sum_probs=63.0
Q ss_pred CCCeEEEecCCchHHHHHHHHH-------CCCCeEEEecc----hHH------------------------HHhc-----
Q 037127 196 GLNSLVDVGGATGTVAKAIAKA-------FPNLECTDFDL----PHV------------------------VNGL----- 235 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~-------~p~~~~~~~Dl----~~~------------------------~~~a----- 235 (307)
-+..|+++|+-.|..+..+++. .++-+++++|. |+. ++..
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 3568999999999988886643 45678999994 321 1110
Q ss_pred --hh---cCCCeEEEecCCCCC-------CC--CccEEEechhhccCChhHHHHHHHHHHHhccCCCCCcEEEEEe
Q 037127 236 --ES---DLANLKYVGGDMFEA-------IP--PADAVVLKWILHDWNDEECVKILKKCKEAITSNSKIGKVIIID 297 (307)
Q Consensus 236 --~~---~~~rv~~~~~d~~~~-------~p--~~D~i~~~~vLh~~~~~~~~~~L~~~~~~L~p~~~gg~lli~e 297 (307)
+. ..++|+++.|++.+. .| .+|++++--= + -+.....+..+...|.| ||.|++=|
T Consensus 149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D---~-Y~~t~~~le~~~p~l~~---GGvIv~DD 217 (257)
T 3tos_A 149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD---L-YEPTKAVLEAIRPYLTK---GSIVAFDE 217 (257)
T ss_dssp TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC---C-HHHHHHHHHHHGGGEEE---EEEEEESS
T ss_pred hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc---c-cchHHHHHHHHHHHhCC---CcEEEEcC
Confidence 01 248899999999762 23 3788777652 2 12345788999999998 55554444
No 471
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=84.32 E-value=0.84 Score=34.15 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=43.2
Q ss_pred hCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNA 106 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~ 106 (307)
...|...+.. .|.++.+||+.+++ ++..+..+|+.|...|.+.+-. ++.|-++..
T Consensus 9 ~~~i~~~~~~--~p~~~~~la~~~~~---~~~~~~~~l~~l~~~G~l~~i~----------~~~~~~~~~ 63 (121)
T 2pjp_A 9 WQKAEPLFGD--EPWWVRDLAKETGT---DEQAMRLTLRQAAQQGIITAIV----------KDRYYRNDR 63 (121)
T ss_dssp HHHHGGGCSS--SCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEE----------TTEEEEHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec----------CCceECHHH
Confidence 3345556643 57799999999999 6889999999999999999886 466666543
No 472
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=84.27 E-value=0.28 Score=36.64 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=37.6
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCC-CCcccHHHHHHHHHhCCceeeec
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINP-SKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~-~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+.|+..|... ++.|..+||+.++.+. -+...+.++|+-|...|++.+..
T Consensus 13 ~~vL~~L~~~-~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 13 WDVMNIIWDK-KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHS-SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhc-CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 3344455544 6899999999997410 04789999999999999999986
No 473
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=83.89 E-value=1.2 Score=32.29 Aligned_cols=44 Identities=11% Similarity=0.228 Sum_probs=35.9
Q ss_pred cccccccCCCCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 40 IPDIINKHGKPT-TLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 40 lfd~L~~~~~~~-t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
|+..|.. |+.+ |..+||+.+|+ ....+++-|+.|...|+++...
T Consensus 33 I~~~l~~-g~~lps~~eLa~~lgV---Sr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 33 IFEELDG-NEGLLVASKIADRVGI---TRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HTTSSBT-TEEEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhhhcC-CCcCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 3344443 3456 99999999999 6789999999999999999875
No 474
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=83.85 E-value=1.4 Score=37.06 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=42.5
Q ss_pred cccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecCh
Q 037127 40 IPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTN 105 (307)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~ 105 (307)
|.-.|.. ++.|+++||+.+|+ +++-+...|.-|...|++++.. ++++.+..
T Consensus 170 l~~~l~~--~~~t~~~la~~~~l---~~~~V~~~l~~L~~~~~v~~~~----------~~~~~~~~ 220 (232)
T 2qlz_A 170 LHYLLLN--GRATVEELSDRLNL---KEREVREKISEMARFVPVKIIN----------DNTVVLDE 220 (232)
T ss_dssp HHHHHHS--SEEEHHHHHHHHTC---CHHHHHHHHHHHTTTSCEEEET----------TTEEEECH
T ss_pred HHHHHhc--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhcCCeEEec----------CCeEEecH
Confidence 4444554 79999999999999 6799999999999999998775 57777664
No 475
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=83.80 E-value=8.7 Score=28.85 Aligned_cols=88 Identities=18% Similarity=0.137 Sum_probs=52.6
Q ss_pred CCeEEEecCCc-hHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCC-------CCCccEEEechhhcc
Q 037127 197 LNSLVDVGGAT-GTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEA-------IPPADAVVLKWILHD 267 (307)
Q Consensus 197 ~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~-------~p~~D~i~~~~vLh~ 267 (307)
..+|+=+|+|. |......+... +.+++++|. ++.++.+++ ..+.++.+|..++ ...+|++++.--
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~-g~~v~vid~~~~~~~~~~~--~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~--- 80 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLAS-DIPLVVIETSRTRVDELRE--RGVRAVLGNAANEEIMQLAHLECAKWLILTIP--- 80 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHH--TTCEEEESCTTSHHHHHHTTGGGCSEEEECCS---
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHH--cCCCEEECCCCCHHHHHhcCcccCCEEEEECC---
Confidence 35788889974 54444444443 568999998 777776663 4677888998763 124787765421
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127 268 WNDEECVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 268 ~~~~~~~~~L~~~~~~L~p~~~gg~lli 295 (307)
++.++..+.. ..+.+.| +.+++.
T Consensus 81 -~~~~n~~~~~-~a~~~~~---~~~iia 103 (140)
T 3fwz_A 81 -NGYEAGEIVA-SARAKNP---DIEIIA 103 (140)
T ss_dssp -CHHHHHHHHH-HHHHHCS---SSEEEE
T ss_pred -ChHHHHHHHH-HHHHHCC---CCeEEE
Confidence 2233333444 3444555 455553
No 476
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=83.57 E-value=2.5 Score=37.48 Aligned_cols=103 Identities=11% Similarity=0.046 Sum_probs=65.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCe-E-EEecc-hHHHHhchh-cCCCeEEEecCCCCC----CC--CccEEEechhh
Q 037127 196 GLNSLVDVGGATGTVAKAIAKAFPNLE-C-TDFDL-PHVVNGLES-DLANLKYVGGDMFEA----IP--PADAVVLKWIL 265 (307)
Q Consensus 196 ~~~~vlDvGgG~G~~~~~l~~~~p~~~-~-~~~Dl-~~~~~~a~~-~~~rv~~~~~d~~~~----~p--~~D~i~~~~vL 265 (307)
+.-+++|+=||.|.+...+.+..-..+ + .++|. +..++..+. .... ++.+|+.+- ++ .+|+++.+-..
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~--~~~~DI~~~~~~~i~~~~~Dil~ggpPC 86 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE--VQVKNLDSISIKQIESLNCNTWFMSPPC 86 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC--CBCCCTTTCCHHHHHHTCCCEEEECCCC
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC--cccCChhhcCHHHhccCCCCEEEecCCc
Confidence 456899999999999999988742234 4 58999 555554443 2222 567888772 33 58999877665
Q ss_pred ccC-----------ChhHHHHHHHHHHH-hccCCCCCcEEEEEeeecC
Q 037127 266 HDW-----------NDEECVKILKKCKE-AITSNSKIGKVIIIDMMRE 301 (307)
Q Consensus 266 h~~-----------~~~~~~~~L~~~~~-~L~p~~~gg~lli~e~~~~ 301 (307)
-.| .|+. -.++..+.+ .++.-...-+++++|.|..
T Consensus 87 Q~fs~S~ag~~~~~~d~r-~~L~~~~~r~~i~~~~~~P~~~~lENV~g 133 (327)
T 3qv2_A 87 QPYNNSIMSKHKDINDPR-AKSVLHLYRDILPYLINKPKHIFIENVPL 133 (327)
T ss_dssp TTCSHHHHTTTCTTTCGG-GHHHHHHHHTTGGGCSSCCSEEEEEECGG
T ss_pred cCcccccCCCCCCCcccc-chhHHHHHHHHHHHhccCCCEEEEEchhh
Confidence 555 2322 346666666 5542000148999998753
No 477
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=82.74 E-value=0.65 Score=43.27 Aligned_cols=65 Identities=11% Similarity=0.151 Sum_probs=49.8
Q ss_pred hCCcccccccC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCC---eeecChhcchhh
Q 037127 37 ELSIPDIINKH-GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQ---GYVLTNASKLLL 111 (307)
Q Consensus 37 ~lglfd~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~---~y~~t~~s~~l~ 111 (307)
++.++..|... ++++|..|||+++++ +...+.|+++-|...|++++... ..++ ...+|+.|+.+.
T Consensus 406 q~~vl~~l~~~~~~~~~~~~l~~~~~~---~~~~~t~~~~~le~~g~v~r~~~-------~~D~R~~~i~lT~~g~~~~ 474 (487)
T 1hsj_A 406 EIYILNHILRSESNEISSKEIAKCSEF---KPYYLTKALQKLKDLKLLSKKRS-------LQDERTVIVYVTDTQKANI 474 (487)
T ss_dssp HHHHHHHHHTCSCSEEEHHHHHHSSCC---CHHHHHHHHHHHHTTTTSCCEEC-------CSSSSCCEEECCSSHHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeecCC-------CCCCCeEEEEECHHHHHHH
Confidence 34455566543 157999999999999 78999999999999999999763 1233 478888887654
No 478
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=82.70 E-value=7.4 Score=34.06 Aligned_cols=84 Identities=15% Similarity=0.107 Sum_probs=51.4
Q ss_pred CCeEEEecCCc-h-HHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCC-CCCCccEEEechhhccCChhH
Q 037127 197 LNSLVDVGGAT-G-TVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFE-AIPPADAVVLKWILHDWNDEE 272 (307)
Q Consensus 197 ~~~vlDvGgG~-G-~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~-~~p~~D~i~~~~vLh~~~~~~ 272 (307)
..+|.=||+|. | .++..|.+.....+++++|. ++.++.+.+.. -+.-...|..+ ...++|+|++.- +...
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G-~~~~~~~~~~~~~~~~aDvVilav-----p~~~ 106 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG-IIDEGTTSIAKVEDFSPDFVMLSS-----PVRT 106 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT-SCSEEESCTTGGGGGCCSEEEECS-----CGGG
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCC-CcchhcCCHHHHhhccCCEEEEeC-----CHHH
Confidence 36788899883 3 44555555533238999998 66666665321 11111233333 344689998764 3344
Q ss_pred HHHHHHHHHHhccC
Q 037127 273 CVKILKKCKEAITS 286 (307)
Q Consensus 273 ~~~~L~~~~~~L~p 286 (307)
...+++++...+++
T Consensus 107 ~~~vl~~l~~~l~~ 120 (314)
T 3ggo_A 107 FREIAKKLSYILSE 120 (314)
T ss_dssp HHHHHHHHHHHSCT
T ss_pred HHHHHHHHhhccCC
Confidence 56788999999987
No 479
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=82.30 E-value=0.85 Score=36.61 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=45.9
Q ss_pred CCcccccccCCCCCCHHHHHHHc--------CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcch
Q 037127 38 LSIPDIINKHGKPTTLNDLVSAL--------TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKL 109 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~--------g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~ 109 (307)
+-|+..|.. +|.+.-+|++.+ ++ +...+.+.|+.|...|+++...... .++...-.|++|+.|+.
T Consensus 5 ~~iL~lL~~--~~~~gyel~~~l~~~~~~~~~~---s~~~ly~~L~~Le~~GlI~~~~~~~--~~~~~r~~Y~lT~~G~~ 77 (179)
T 1yg2_A 5 HVILTVLST--RDATGYDITKEFSASIGYFWKA---SHQQVYRELNKMGEQGLVTCVLEPQ--EGKPDRKVYSITQAGRS 77 (179)
T ss_dssp HHHHHHHHH--CCBCHHHHHHHHTTGGGGTCCC---CHHHHHHHHHHHHHTTSEEECCC-----------CEEECHHHHH
T ss_pred HHHHHHHhc--CCCCHHHHHHHHHHHhCCccCC---CcCcHHHHHHHHHHCCCeEEEeecC--CCCCCceEEEeChHHHH
Confidence 335555665 799999999998 45 6799999999999999999764210 00112336999999983
No 480
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=82.08 E-value=0.63 Score=36.33 Aligned_cols=48 Identities=19% Similarity=0.384 Sum_probs=38.9
Q ss_pred hCCcccccccCC-CCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 37 ELSIPDIINKHG-KPTTLNDLVSAL-----TINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 37 ~lglfd~L~~~~-~~~t~~eLA~~~-----g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|...|++.+..
T Consensus 19 R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 19 RLKILEVLQQPECQHISAEELYKKLIDLGEEI---GLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHCCcEEEEE
Confidence 344666665444 689999999998 55 6788999999999999999875
No 481
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=82.01 E-value=1.4 Score=32.59 Aligned_cols=68 Identities=9% Similarity=0.242 Sum_probs=46.8
Q ss_pred hCCcccccccCCCCCCHHHHHHHc--------CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcc
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSAL--------TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASK 108 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~--------g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~ 108 (307)
++=|+..|.. +|.+--+|++.+ ++ ++..+.+.|+.|...|+++...... .++...-.|++|+.|+
T Consensus 14 ~~~IL~~L~~--~~~~Gyei~~~l~~~~~~~~~i---~~gtly~~L~rLe~~GlI~~~~~~~--~~~~~rk~Y~LT~~G~ 86 (116)
T 3f8b_A 14 NVILLNVLKQ--GDNYVYGIIKQVKEASNGEMEL---NEATLYTIFKRLEKDGIISSYWGDE--SQGGRRKYYRLTEIGH 86 (116)
T ss_dssp HHHHHHHHHH--CCBCHHHHHHHHHHHTTTCCCC---CHHHHHHHHHHHHHTTSEEEEEEC------CCEEEEEECHHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHCCCEEEEeecc--CCCCCceEEEECHHHH
Confidence 3334445554 788888998887 45 6899999999999999999864100 0011123599999998
Q ss_pred hhh
Q 037127 109 LLL 111 (307)
Q Consensus 109 ~l~ 111 (307)
...
T Consensus 87 ~~l 89 (116)
T 3f8b_A 87 ENM 89 (116)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 482
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=81.70 E-value=0.82 Score=41.66 Aligned_cols=46 Identities=9% Similarity=0.211 Sum_probs=39.2
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
..|++.|..+ +++|..|||+.+|+ ....+.++++.|...|++.+.+
T Consensus 19 ~~il~~l~~~-~~~sr~~la~~~~l---s~~tv~~~v~~L~~~g~i~~~~ 64 (406)
T 1z6r_A 19 GAVYRLIDQL-GPVSRIDLSRLAQL---APASITKIVHEMLEAHLVQELE 64 (406)
T ss_dssp HHHHHHHHSS-CSCCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEeec
Confidence 3466777765 79999999999999 6789999999999999999865
No 483
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=81.66 E-value=0.65 Score=33.97 Aligned_cols=64 Identities=22% Similarity=0.382 Sum_probs=43.8
Q ss_pred cccccccCCCCCCHHHHHHHc----CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchhh
Q 037127 40 IPDIINKHGKPTTLNDLVSAL----TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLLL 111 (307)
Q Consensus 40 lfd~L~~~~~~~t~~eLA~~~----g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l~ 111 (307)
|+..|.. +|.+--+|++.+ ++ ++..+.+.|+.|...|+++...... .+...-.|++|+.|+...
T Consensus 14 IL~~L~~--~~~~gyel~~~l~~~~~i---~~~tly~~L~~Le~~GlI~~~~~~~---~~r~r~~y~LT~~G~~~l 81 (108)
T 3l7w_A 14 ILAIVSK--HDSYGYDISQTIKLIASI---KESTLYPILKKLEKAGYLSTYTQEH---QGRRRKYYHLTDSGEKHL 81 (108)
T ss_dssp HHHHHHH--SCEEHHHHHHHHTTTCCC---CHHHHHHHHHHHHHTTSEEEEEEEE---TTEEEEEEEECHHHHHHH
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHhCC---CcChHHHHHHHHHHCCCeEEEeecC---CCCcceEEEECHHHHHHH
Confidence 3444444 577777777664 67 6799999999999999999875210 000012499999998654
No 484
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=81.36 E-value=1.7 Score=31.97 Aligned_cols=50 Identities=10% Similarity=0.140 Sum_probs=38.8
Q ss_pred HHHHHHhCCcccccccCCCCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 31 SLKCAVELSIPDIINKHGKPT-TLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 31 ~L~~a~~lglfd~L~~~~~~~-t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
.|...+..|-+. . |..+ |..+||+.+|+ +..-+++.|..|...|+++..+
T Consensus 17 ~i~~~I~~g~~~---~-G~~lPs~~~La~~~~v---Sr~tvr~al~~L~~~Gli~~~~ 67 (113)
T 3tqn_A 17 KIVEAIIDGSYV---E-GEMIPSIRKISTEYQI---NPLTVSKAYQSLLDDNVIEKRR 67 (113)
T ss_dssp HHHHHHHHTSSC---T-TCEECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHcCCCC---C-CCcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 344444555543 2 3566 89999999999 5788999999999999999886
No 485
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=81.30 E-value=0.67 Score=32.98 Aligned_cols=45 Identities=11% Similarity=0.113 Sum_probs=36.6
Q ss_pred cccccccC-CCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 40 IPDIINKH-GKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 40 lfd~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
|+..|... +..++..+||+++++ +...+.++|+.|...|++.+..
T Consensus 25 Vl~~I~~~g~~gi~qkeLa~~~~l---~~~tvt~iLk~LE~kglIkr~~ 70 (91)
T 2dk5_A 25 VYQIIEDAGNKGIWSRDVRYKSNL---PLTEINKILKNLESKKLIKAVK 70 (91)
T ss_dssp HHHHHHHHCTTCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHcCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 44455532 147999999999999 6899999999999999999664
No 486
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=81.27 E-value=0.48 Score=36.84 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=49.0
Q ss_pred HHhCCcccccccCCCCCCHHHHHHHc--------CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChh
Q 037127 35 AVELSIPDIINKHGKPTTLNDLVSAL--------TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNA 106 (307)
Q Consensus 35 a~~lglfd~L~~~~~~~t~~eLA~~~--------g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~ 106 (307)
.+++-|+..|.. +|.+.-+|++.+ ++ ++..+.+.|+-|...|+++...... .++...-.|++|+.
T Consensus 41 ~~~~~IL~~L~~--~~~~gyeI~~~l~~~~~~~~~i---s~gtLy~~L~rLE~~GlI~~~~~~~--~~~~~rk~Y~LT~~ 113 (145)
T 1xma_A 41 YVDTIILSLLIE--GDSYGYEISKNIRIKTDELYVI---KETTLYSAFARLEKNGYIKSYYGEE--TQGKRRTYYRITPE 113 (145)
T ss_dssp THHHHHHHHHHH--CCEEHHHHHHHHHHHHTTSCCC---CHHHHHHHHHHHHHTTSEEEEEEEE--C--CEEEEEEECHH
T ss_pred cHHHHHHHHHHh--CCCCHHHHHHHHHHhhCCccCc---ChhHHHHHHHHHHHCCCEEEEEecc--CCCCCeEEEEECHH
Confidence 345555556654 689988988887 46 6799999999999999998874210 00011235999999
Q ss_pred cchhh
Q 037127 107 SKLLL 111 (307)
Q Consensus 107 s~~l~ 111 (307)
|+.+.
T Consensus 114 G~~~l 118 (145)
T 1xma_A 114 GIKYY 118 (145)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98654
No 487
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=81.17 E-value=1.9 Score=35.94 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
-+.|-++||+.+|+ ....+.|+|..|...|+++...
T Consensus 176 ~~~t~~~iA~~lG~---sr~tvsR~l~~L~~~g~I~~~~ 211 (250)
T 3e6c_C 176 MPLSQKSIGEITGV---HHVTVSRVLASLKRENILDKKK 211 (250)
T ss_dssp CCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECS
T ss_pred CCCCHHHHHHHhCC---cHHHHHHHHHHHHHCCCeEeCC
Confidence 47899999999999 6799999999999999999874
No 488
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=80.45 E-value=1.3 Score=39.11 Aligned_cols=54 Identities=15% Similarity=0.227 Sum_probs=42.8
Q ss_pred CcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecCh
Q 037127 39 SIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTN 105 (307)
Q Consensus 39 glfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~ 105 (307)
.|++.|.. ++++|.++||+.+++ .+..++|-++.|...|+...... ...|++.+
T Consensus 9 ~Il~~L~~-~~~~s~~eLa~~l~v---S~~ti~r~l~~L~~~G~~i~~~~---------g~GY~l~~ 62 (321)
T 1bia_A 9 KLIALLAN-GEFHSGEQLGETLGM---SRAAINKHIQTLRDWGVDVFTVP---------GKGYSLPE 62 (321)
T ss_dssp HHHHHHTT-SSCBCHHHHHHHHTS---CHHHHHHHHHHHHHTTCCCEEET---------TTEEECSS
T ss_pred HHHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCcEEEec---------CCCcEEee
Confidence 35556654 378999999999999 68999999999999999876542 34688764
No 489
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=80.38 E-value=1.1 Score=40.67 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=44.0
Q ss_pred CCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecC
Q 037127 38 LSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLT 104 (307)
Q Consensus 38 lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t 104 (307)
..|+++|.. +|.++++|++++|+ +...+...|-.|.-.|++...+ +++|+++
T Consensus 331 ~~vl~~l~~--~~~~~D~l~~~~gl---~~~~v~~~L~~LEl~G~v~~~~----------Gg~~~~~ 382 (382)
T 3maj_A 331 TRILALLGP--SPVGIDDLIRLSGI---SPAVVRTILLELELAGRLERHG----------GSLVSLS 382 (382)
T ss_dssp HHHHHHCCS--SCEEHHHHHHHHCC---CHHHHHHHHHHHHHTTCCEECT----------TSEEEC-
T ss_pred HHHHHhhCC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEeCC----------CceEecC
Confidence 357888875 79999999999999 6788999999999999999886 5778764
No 490
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=79.29 E-value=2.7 Score=31.76 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=39.9
Q ss_pred HHHHHHHhCCcccccccCCCCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 30 MSLKCAVELSIPDIINKHGKPT-TLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 30 ~~L~~a~~lglfd~L~~~~~~~-t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
..|...+..|-+. . |..+ |..+||+.+|+ +..-+++-|..|...|+++..+
T Consensus 11 ~~i~~~I~~g~l~---~-G~~LPse~~La~~~gv---Sr~tVr~Al~~L~~~Gli~~~~ 62 (129)
T 2ek5_A 11 SLIEDSIVDGTLS---I-DQRVPSTNELAAFHRI---NPATARNGLTLLVEAGILYKKR 62 (129)
T ss_dssp HHHHHHHHTTSSC---T-TSCBCCHHHHHHHTTC---CHHHHHHHHHHHHTTTSEEEET
T ss_pred HHHHHHHHhCCCC---C-CCcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEec
Confidence 3455555556543 2 4566 89999999999 5788999999999999999886
No 491
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=79.18 E-value=17 Score=26.95 Aligned_cols=63 Identities=16% Similarity=0.123 Sum_probs=39.6
Q ss_pred CeEEEecCCc-hHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCC-------CCCccEEEech
Q 037127 198 NSLVDVGGAT-GTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEA-------IPPADAVVLKW 263 (307)
Q Consensus 198 ~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~-------~p~~D~i~~~~ 263 (307)
.+|+=+|||. |......+... +.+++++|. ++.++.+.+ ..+.++.+|..++ ...+|+++..-
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~-g~~V~~id~~~~~~~~~~~--~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~ 78 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAA-GKKVLAVDKSKEKIELLED--EGFDAVIADPTDESFYRSLDLEGVSAVLITG 78 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHH--TTCEEEECCTTCHHHHHHSCCTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHH--CCCcEEECCCCCHHHHHhCCcccCCEEEEec
Confidence 4688889863 33222222322 568999998 666666552 3477888998873 23588877643
No 492
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=78.60 E-value=9.6 Score=34.80 Aligned_cols=87 Identities=14% Similarity=0.148 Sum_probs=54.1
Q ss_pred CeEEEecCCc-hHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCC-------CCCccEEEechhhccC
Q 037127 198 NSLVDVGGAT-GTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEA-------IPPADAVVLKWILHDW 268 (307)
Q Consensus 198 ~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~-------~p~~D~i~~~~vLh~~ 268 (307)
.+|+=+|+|. |......+... +..++++|. +..++.+++ ..+.++.||..++ ...+|++++.-
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~-g~~vvvId~d~~~v~~~~~--~g~~vi~GDat~~~~L~~agi~~A~~viv~~----- 76 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSS-GVKMVVLDHDPDHIETLRK--FGMKVFYGDATRMDLLESAGAAKAEVLINAI----- 76 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT-TCCEEEEECCHHHHHHHHH--TTCCCEESCTTCHHHHHHTTTTTCSEEEECC-----
T ss_pred CeEEEECCCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHh--CCCeEEEcCCCCHHHHHhcCCCccCEEEECC-----
Confidence 4688889873 54444445443 578999998 777777763 2456788998873 23588876643
Q ss_pred ChhHHHHHHHHHHHhccCCCCCcEEEE
Q 037127 269 NDEECVKILKKCKEAITSNSKIGKVII 295 (307)
Q Consensus 269 ~~~~~~~~L~~~~~~L~p~~~gg~lli 295 (307)
++++....+....+.+.| ..+|+.
T Consensus 77 ~~~~~n~~i~~~ar~~~p---~~~Iia 100 (413)
T 3l9w_A 77 DDPQTNLQLTEMVKEHFP---HLQIIA 100 (413)
T ss_dssp SSHHHHHHHHHHHHHHCT---TCEEEE
T ss_pred CChHHHHHHHHHHHHhCC---CCeEEE
Confidence 333333444445555665 455554
No 493
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=78.44 E-value=5.7 Score=29.70 Aligned_cols=51 Identities=10% Similarity=0.064 Sum_probs=40.3
Q ss_pred HHHHHHHhCCcccccccCCCCC-CHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 30 MSLKCAVELSIPDIINKHGKPT-TLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 30 ~~L~~a~~lglfd~L~~~~~~~-t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
..|...+..|-+. . |..+ |..+||+.+|+ +..-+++-|..|...|+++..+
T Consensus 18 ~~l~~~I~~g~~~---~-G~~lPse~~La~~~~v---Sr~tvr~Al~~L~~~Gli~~~~ 69 (126)
T 3by6_A 18 DRIKNEVATDVLS---A-NDQLPSVRETALQEKI---NPNTVAKAYKELEAQKVIRTIP 69 (126)
T ss_dssp HHHHHHHHTTSSC---T-TCEECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHhCCCC---C-CCcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 3455555566553 2 4567 99999999999 5788999999999999999886
No 494
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=77.69 E-value=2.3 Score=29.11 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 49 KPTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 49 ~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+.+++.++|+.+++. ..+++..++.+|.++|++++..
T Consensus 29 ~~i~l~~aa~~L~v~--~kRRiYDI~NVLe~igli~K~~ 65 (76)
T 1cf7_A 29 GVLDLKLAADTLAVR--QKRRIYDITNVLEGIGLIEKKS 65 (76)
T ss_dssp TEEEHHHHHHHTTTC--CTHHHHHHHHHHHHHTSEEEEE
T ss_pred CcCcHHHHHHHhCCc--cceehhhHHHHHhHhcceeecC
Confidence 789999999999993 2699999999999999999985
No 495
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=77.31 E-value=10 Score=30.36 Aligned_cols=95 Identities=15% Similarity=0.196 Sum_probs=55.1
Q ss_pred eEEEecCCchHHHHHHHHHC--CCCeEEEecc-hHHHHhchhcCCCeEEEecCCCCC----CCCccEEEechhhccCChh
Q 037127 199 SLVDVGGATGTVAKAIAKAF--PNLECTDFDL-PHVVNGLESDLANLKYVGGDMFEA----IPPADAVVLKWILHDWNDE 271 (307)
Q Consensus 199 ~vlDvGgG~G~~~~~l~~~~--p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~~d~~~~----~p~~D~i~~~~vLh~~~~~ 271 (307)
+||=. ||+|..+..+++.+ .+.++++++. +.-.+.. ..+++++.+|+.++ +.++|+++..--.......
T Consensus 2 kvlVt-GatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~ 77 (221)
T 3ew7_A 2 KIGII-GATGRAGSRILEEAKNRGHEVTAIVRNAGKITQT---HKDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAE 77 (221)
T ss_dssp EEEEE-TTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHH---CSSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTT
T ss_pred eEEEE-cCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhc---cCCCeEEeccccChhhhhhcCCCEEEECCcCCccccc
Confidence 35544 44555555554432 2468888888 3333222 26899999999874 2357877654433222222
Q ss_pred HHHHHHHHHHHhccCCCCCcEEEEEee
Q 037127 272 ECVKILKKCKEAITSNSKIGKVIIIDM 298 (307)
Q Consensus 272 ~~~~~L~~~~~~L~p~~~gg~lli~e~ 298 (307)
......+++.++++..+ .++++++-.
T Consensus 78 ~~~~~~~~l~~a~~~~~-~~~~v~~SS 103 (221)
T 3ew7_A 78 KHVTSLDHLISVLNGTV-SPRLLVVGG 103 (221)
T ss_dssp SHHHHHHHHHHHHCSCC-SSEEEEECC
T ss_pred hHHHHHHHHHHHHHhcC-CceEEEEec
Confidence 34566777888887521 467776654
No 496
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=77.10 E-value=1.3 Score=32.18 Aligned_cols=40 Identities=13% Similarity=0.080 Sum_probs=32.6
Q ss_pred HHhCCcccccccCCCCCCHHHHHHHcCCCCCCcccHHHHHHHHHh
Q 037127 35 AVELSIPDIINKHGKPTTLNDLVSALTINPSKTRCVYRLMRILIH 79 (307)
Q Consensus 35 a~~lglfd~L~~~~~~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~ 79 (307)
+.++||+..|.. |..|..|||+.+|+ ....+.|+=+.|..
T Consensus 45 ~~R~~l~~~L~~--ge~TQREIA~~lGi---S~stISRi~r~L~~ 84 (101)
T 1jhg_A 45 GTRVRIIEELLR--GEMSQRELKNELGA---GIATITRGSNSLKA 84 (101)
T ss_dssp HHHHHHHHHHHH--CCSCHHHHHHHHCC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCcCHHHHHHHHCC---ChhhhhHHHHHHHH
Confidence 457999998886 78999999999999 57788887666643
No 497
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=76.55 E-value=1.5 Score=32.55 Aligned_cols=68 Identities=22% Similarity=0.224 Sum_probs=47.3
Q ss_pred hCCcccccccCCCCCCHHHHHHHc------CCCCCCcccHHHHHHHHHhCCceeeeccCCCCCCCCCCCeeecChhcchh
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSAL------TINPSKTRCVYRLMRILIHSGFFAQQTLNSSRNNNDEEQGYVLTNASKLL 110 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~------g~~~~~~~~l~r~L~~L~~~g~l~~~~~~~~~~~~~~~~~y~~t~~s~~l 110 (307)
++=|+..|.. +|.+--+|++.+ ++ ++..+...|+-|...|+++...... .++...-.|++|+.|+..
T Consensus 15 ~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~i---s~gtlY~~L~rLe~~GlI~~~~~~~--~~g~~rk~Y~lT~~G~~~ 87 (116)
T 3hhh_A 15 EGLVLAIIQR--KETYGYEITKILNDQGFTEI---VEGTVYTILLRLEKNQWVIAEKKPS--EKGPMRKFYRLTSSGEAE 87 (116)
T ss_dssp HHHHHHHHHH--SCBCHHHHHHHHHTTSCSSC---CHHHHHHHHHHHHHTTSEEEEEEEC--C--CEEEEEEECHHHHHH
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHCCCEEEEeeec--CCCCCceEEEECHHHHHH
Confidence 3334445554 789999999987 45 6899999999999999999864210 000112359999999855
Q ss_pred h
Q 037127 111 L 111 (307)
Q Consensus 111 ~ 111 (307)
.
T Consensus 88 l 88 (116)
T 3hhh_A 88 L 88 (116)
T ss_dssp H
T ss_pred H
Confidence 4
No 498
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=76.23 E-value=1.3 Score=34.24 Aligned_cols=47 Identities=17% Similarity=0.346 Sum_probs=37.1
Q ss_pred hCCcccccccCCCCCCHHHHHHHc-----CCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 37 ELSIPDIINKHGKPTTLNDLVSAL-----TINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 37 ~lglfd~L~~~~~~~t~~eLA~~~-----g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+.-|++.|...+ +.|++||.+.+ ++ +..-+.|.|+.|...|++.+..
T Consensus 21 R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~i---s~~TVYR~L~~L~e~Glv~~i~ 72 (145)
T 3eyy_A 21 RQLVLEAVDTLE-HATPDDILGEVRKTASGI---NISTVYRTLELLEELGLVSHAH 72 (145)
T ss_dssp HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCC---CHhHHHHHHHHHHHCCcEEEEE
Confidence 344556665544 89999999887 34 6789999999999999999876
No 499
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=76.13 E-value=2.7 Score=33.99 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=32.6
Q ss_pred CCCHHHHHHHcCCCCCCcccHHHHHHHHHhCCceeeec
Q 037127 50 PTTLNDLVSALTINPSKTRCVYRLMRILIHSGFFAQQT 87 (307)
Q Consensus 50 ~~t~~eLA~~~g~~~~~~~~l~r~L~~L~~~g~l~~~~ 87 (307)
+.|-++||+.+|+ ....+.|+|..|...|+++...
T Consensus 169 ~~t~~~lA~~lg~---sr~tvsR~l~~L~~~g~I~~~~ 203 (220)
T 3dv8_A 169 KITHETIANHLGS---HREVITRMLRYFQVEGLVKLSR 203 (220)
T ss_dssp CCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEeCC
Confidence 7899999999999 6799999999999999999873
No 500
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=75.87 E-value=14 Score=33.27 Aligned_cols=101 Identities=16% Similarity=0.053 Sum_probs=61.7
Q ss_pred ccCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEecc-hHHHHhchhcCCCeEEEe---cCC-CCC------CCCccEEEe
Q 037127 194 FEGLNSLVDVGGAT-GTVAKAIAKAFPNLECTDFDL-PHVVNGLESDLANLKYVG---GDM-FEA------IPPADAVVL 261 (307)
Q Consensus 194 ~~~~~~vlDvGgG~-G~~~~~l~~~~p~~~~~~~Dl-~~~~~~a~~~~~rv~~~~---~d~-~~~------~p~~D~i~~ 261 (307)
+....+||-+|+|. |.++.++++.....+++++|. +.-.+.+++... ..+. .|+ .+. -.++|+++-
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa--~~i~~~~~~~~~~~~~~~~~g~g~Dvvid 260 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGF--ETIDLRNSAPLRDQIDQILGKPEVDCGVD 260 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTC--EEEETTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC--cEEcCCCcchHHHHHHHHhCCCCCCEEEE
Confidence 56678999999885 899999999874338999997 666666765322 2221 122 110 114888765
Q ss_pred chhhccCC--h----hHHHHHHHHHHHhccCCCCCcEEEEEeee
Q 037127 262 KWILHDWN--D----EECVKILKKCKEAITSNSKIGKVIIIDMM 299 (307)
Q Consensus 262 ~~vLh~~~--~----~~~~~~L~~~~~~L~p~~~gg~lli~e~~ 299 (307)
.---.... . ......++.+.++|++ +|+++++-..
T Consensus 261 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~---gG~iv~~G~~ 301 (398)
T 2dph_A 261 AVGFEAHGLGDEANTETPNGALNSLFDVVRA---GGAIGIPGIY 301 (398)
T ss_dssp CSCTTCBCSGGGTTSBCTTHHHHHHHHHEEE---EEEEECCSCC
T ss_pred CCCCccccccccccccccHHHHHHHHHHHhc---CCEEEEeccc
Confidence 43221100 0 0001357888899998 8999877543
Done!