BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037128
         (460 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
 pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
          Length = 421

 Score =  219 bits (557), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 154/451 (34%), Positives = 228/451 (50%), Gaps = 54/451 (11%)

Query: 2   EVEIISRESIKPSSPTPHDLKSHKLCLLDQFRSNIYVPRVLYYPLNQDDLSSTIDIDHIV 61
           ++E +S E I PSSPTP  LK +K+  LDQ     ++P +L+YP   + L S +D     
Sbjct: 4   QMEKVSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYP---NPLDSNLD----P 56

Query: 62  SKRLQQLKQSLSEALVRFYPLAGKLTNNFSVDCNDEGVYFVEAAAKIHLNEF------LI 115
           ++  Q LKQSLS+ L  FYPLAG++  N SVDCND GV FVEA  +  L++       L 
Sbjct: 57  AQTSQHLKQSLSKVLTHFYPLAGRINVNSSVDCNDSGVPFVEARVQAQLSQAIQNVVELE 116

Query: 116 QPDHNLIYKFFPVDGNEQRGQIAGAHVAKVQVTSFACGGLVICACISHAFGDGTSFSSFM 175
           + D  L    +P    E    +  A    V+++ F CGG  I   +SH   D  S ++F+
Sbjct: 117 KLDQYLPSAAYPGGKIEVNEDVPLA----VKISFFECGGTAIGVNLSHKIADVLSLATFL 172

Query: 176 KAWAATARNKTSEEEAIYICPNYD-ASSLFPPNDGDLFHQLKATSRASFGRFFETGKFVV 234
            AW AT R +T       + PN+D A+  FPP D     +L                 V+
Sbjct: 173 NAWTATCRGETE-----IVLPNFDLAARHFPPVDNTPSPELVPDENV-----------VM 216

Query: 235 RRFVFDXXXXXXXXXXXXS-SRVQNPTRVEVVSATLSKSVMTAFKTRSGSLKPTLLSHAV 293
           +RFVFD            S S  +N +RV++V A + K V+   + + G+    ++  AV
Sbjct: 217 KRFVFDKEKIGALRAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAV 276

Query: 294 NLRSKARPPLSENLIGNIVWKT-NALCTEEEVDLDVLVWQLREALSKFDGDFVKS-LQGV 351
           NLRS+  PPL    +GNI      A+  E + D   L+  LR +L K + D     L+G+
Sbjct: 277 NLRSRMNPPLPHYAMGNIATLLFAAVDAEWDKDFPDLIGPLRTSLEKTEDDHNHELLKGM 336

Query: 352 GGLLKLSEDIKCEAEAYSDAKNKIMFSSWSTFGFYGINFGWGKPIWVSGACLGGSIVESS 411
             L +L            + +  + F+SW   GFY ++FGWGKP+    AC   +     
Sbjct: 337 TCLYEL------------EPQELLSFTSWCRLGFYDLDFGWGKPL---SAC--TTTFPKR 379

Query: 412 PTIILMDTRSGNGIEAWVLLIEEDMALLEVD 442
              +LMDTRSG+G+EAW+ + E++MA+L V+
Sbjct: 380 NAALLMDTRSGDGVEAWLPMAEDEMAMLPVE 410


>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
           (Crystal Form 2)
          Length = 439

 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 22/190 (11%)

Query: 1   MEVEIISRESIKPSSPTP-HDLKSHKLCLLDQFRSNIYVPRVLYY-PLNQDDLSSTIDID 58
           M++E+     ++P+  TP  +L +  +   D    N + P V +Y P    +        
Sbjct: 6   MKIEVKESTMVRPAQETPGRNLWNSNV---DLVVPNFHTPSVYFYRPTGSSNFFDA---- 58

Query: 59  HIVSKRLQQLKQSLSEALVRFYPLAGKLTNN----FSVDCNDEGVYFVEAAAKIHLNEFL 114
                  + LK +LS ALV FYP+AG+L  +      ++CN EGV FVEA +   +++F 
Sbjct: 59  -------KVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFG 111

Query: 115 IQPDHNLIYKFFPVDGNEQRGQIAGAHVAKVQVTSFACGGLVICACISHAFGDGTSFSSF 174
                  + +  P     Q   I+   +  +QVT F CGG+ +   + H   DG S   F
Sbjct: 112 DFAPTLELRRLIPAVDYSQ--GISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHF 169

Query: 175 MKAWAATARN 184
           + +W+  AR 
Sbjct: 170 INSWSDMARG 179



 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 12/135 (8%)

Query: 287 TLLSHAVNLRSKARPPLSENLIGNIVWKTNALCTEEEVDLDVLVW----QLREALSKFDG 342
           T L  A + R++ RP L     GN+++    +    +++    VW    ++ +AL++ D 
Sbjct: 283 TKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKP-VWYAASKIHDALARMDN 341

Query: 343 DFVKSLQGVGGLLKLSEDIKCEAE-AYSDAKNKIMFSSWSTFGFYGINFGWGKPIWVSGA 401
           D+++S       L+L  D+K     A++     +  +SW     +  +FGWG+PI++   
Sbjct: 342 DYLRSALD---YLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPG 398

Query: 402 CL---GGSIVESSPT 413
            +   G S +  SPT
Sbjct: 399 GIAYEGLSFILPSPT 413


>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
 pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
          Length = 436

 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 22/190 (11%)

Query: 1   MEVEIISRESIKPSSPTP-HDLKSHKLCLLDQFRSNIYVPRVLYY-PLNQDDLSSTIDID 58
           M++E+     ++P+  TP  +L +  +   D    N + P V +Y P    +        
Sbjct: 3   MKIEVKESTMVRPAQETPGRNLWNSNV---DLVVPNFHTPSVYFYRPTGSSNFFDA---- 55

Query: 59  HIVSKRLQQLKQSLSEALVRFYPLAGKLTNN----FSVDCNDEGVYFVEAAAKIHLNEFL 114
                  + LK +LS ALV FYP+AG+L  +      ++CN EGV FVEA +   +++F 
Sbjct: 56  -------KVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFG 108

Query: 115 IQPDHNLIYKFFPVDGNEQRGQIAGAHVAKVQVTSFACGGLVICACISHAFGDGTSFSSF 174
                  + +  P     Q   I+   +  +QVT F CGG+ +   + H   DG S   F
Sbjct: 109 DFAPTLELRRLIPAVDYSQ--GISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHF 166

Query: 175 MKAWAATARN 184
           + +W+  AR 
Sbjct: 167 INSWSDMARG 176



 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 12/135 (8%)

Query: 287 TLLSHAVNLRSKARPPLSENLIGNIVWKTNALCTEEEVDLDVLVW----QLREALSKFDG 342
           T L  A + R++ RP L     GN+++    +    +++    VW    ++ +AL++ D 
Sbjct: 280 TKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKP-VWYAASKIHDALARMDN 338

Query: 343 DFVKSLQGVGGLLKLSEDIKCEAE-AYSDAKNKIMFSSWSTFGFYGINFGWGKPIWVSGA 401
           D+++S       L+L  D+K     A++     +  +SW     +  +FGWG+PI++   
Sbjct: 339 DYLRSALD---YLELQPDLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPG 395

Query: 402 CL---GGSIVESSPT 413
            +   G S +  SPT
Sbjct: 396 GIAYEGLSFILPSPT 410


>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
           Complexed With Malonyl-coa
 pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
           Complexed With Malonyl-coa
 pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
 pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
          Length = 454

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 108/421 (25%), Positives = 161/421 (38%), Gaps = 74/421 (17%)

Query: 15  SPTPHDL--KSHKLCLLDQF--RSNIYVPRVLYY--PLNQDDLSSTIDIDHIVSKRLQQL 68
           SP P  L  KS +L   D F  RS   +  + +Y  P+ +   + T+         +  +
Sbjct: 16  SPPPDTLGDKSLQLTFFDFFWLRSPP-INNLFFYELPITRSQFTETV---------VPNI 65

Query: 69  KQSLSEALVRFYPLAGKLTNNFSVDCNDEGVYFVE--------AAAKIHLNEFLIQPDHN 120
           K SLS  L  FYP  GKL   +        + +VE        A   + LNE       N
Sbjct: 66  KHSLSITLKHFYPFVGKLVV-YPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRN 124

Query: 121 L--IYKFFPVDGNEQR-GQIAGAHVAKVQVTSFACGGLVICACISHAFGDGTSFSSFMKA 177
               Y   P+ G   R        +  VQVT F   G+ I     H  GD ++   F+KA
Sbjct: 125 CDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKA 184

Query: 178 WAATARNKTSEEE--AIYICPNYDASSLFPPNDGDLFHQLKATSRASFGRFFET------ 229
           W + AR+  ++E   A    P YD    +P  D      LK     SF   + T      
Sbjct: 185 WTSIARSGNNDESFLANGTRPLYDRIIKYPMLDE---AYLKRAKVESFNEDYVTQSLAGP 241

Query: 230 -----GKFVVRRFVFDXXXXXXXXXXXXSSRV--QNPTRVEVVSATLSKSVMTAFKTRSG 282
                  F++ R V +              RV  Q PT   V S T++ + + +   +S 
Sbjct: 242 SDKLRATFILTRAVIN----------QLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSR 291

Query: 283 SLKPTLLSHAVNLRSKARPPLSENLIGNIVW------KTNALCTEEEVDLDVLVWQLREA 336
           + K  L    ++ R++ +PP+     GN V       KTN L  +E          + E 
Sbjct: 292 NDKLQLFGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKE--GFITAAKLIGEN 349

Query: 337 LSKFDGDFVKSLQGVGGLLKLSEDIKCEAEAYSDAKNKIM--FSSWSTFGFYGINFGWGK 394
           L K   D+        G+LK  +D++   +  S+     M   S      FY ++FGWGK
Sbjct: 350 LHKTLTDYKD------GVLK--DDMESFNDLVSEGMPTTMTWVSGTPKLRFYDMDFGWGK 401

Query: 395 P 395
           P
Sbjct: 402 P 402


>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
           Methionine Derivative
 pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
           Methionine Derivative
          Length = 454

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 153/417 (36%), Gaps = 66/417 (15%)

Query: 15  SPTPHDL--KSHKLCLLDQF--RSNIYVPRVLYY--PLNQDDLSSTIDIDHIVSKRLQQL 68
           SP P  L  KS +L   D F  RS   +  + +Y  P+ +   + T+         +  +
Sbjct: 16  SPPPDTLGDKSLQLTFFDFFWLRSPP-INNLFFYELPITRSQFTETV---------VPNI 65

Query: 69  KQSLSEALVRFYPLAGKLTNNFSVDCNDEGVYFVE--------AAAKIHLNEFLIQPDHN 120
           K SLS  L  FYP  GKL   +        + +VE        A   + LNE       N
Sbjct: 66  KHSLSITLKHFYPFVGKLVV-YPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNHPRN 124

Query: 121 L--IYKFFPVDGNEQR-GQIAGAHVAKVQVTSFACGGLVICACISHAFGDGTSFSSFMKA 177
               Y   P+ G   R        +  VQVT F   G+ I     H  GD ++   F+KA
Sbjct: 125 CDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKA 184

Query: 178 WAATARNKTSEEE--AIYICPNYDASSLFPPNDGDLFHQLKATSRASFGRFFET------ 229
           W + AR+  ++E   A    P YD    +P  D      LK     SF   + T      
Sbjct: 185 WTSIARSGNNDESFLANGTRPLYDRIIKYPXLDE---AYLKRAKVESFNEDYVTQSLAGP 241

Query: 230 -----GKFVVRRFVFDXXXXXXXXXXXXSSRVQNPTRVEVVSATLSKSVMTAFKTRSGSL 284
                  F++ R V +                Q PT   V S T++ + + +   +S + 
Sbjct: 242 SDKLRATFILTRAVINQLKDRVL--------AQLPTLEYVSSFTVACAYIWSCIAKSRND 293

Query: 285 KPTLLSHAVNLRSKARPPLSENLIGNIVW------KTNALCTEEEVDLDVLVWQLREALS 338
           K  L    ++ R++ +PP+     GN V       KTN L  +E          + E L 
Sbjct: 294 KLQLFGFPIDRRARXKPPIPTAYFGNCVGGCAAIAKTNLLIGKE--GFITAAKLIGENLH 351

Query: 339 KFDGDFVKSLQGVGGLLKLSEDIKCEAEAYSDAKNKIMFSSWSTFGFYGINFGWGKP 395
           K   D+        G+LK   +   +  +          S      FY  +FGWGKP
Sbjct: 352 KTLTDYKD------GVLKDDXESFNDLVSEGXPTTXTWVSGTPKLRFYDXDFGWGKP 402


>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
           (Crystal Form 1)
 pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
           (Crystal Form 1)
          Length = 439

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 86/190 (45%), Gaps = 22/190 (11%)

Query: 1   MEVEIISRESIKPSSPTP-HDLKSHKLCLLDQFRSNIYVPRVLYY-PLNQDDLSSTIDID 58
           M++E+     ++P+  TP  +L +  +   D    N + P V +Y P    +        
Sbjct: 6   MKIEVKESTMVRPAQETPGRNLWNSNV---DLVVPNFHTPSVYFYRPTGSSNFFDA---- 58

Query: 59  HIVSKRLQQLKQSLSEALVRFYPLAGKLTNN----FSVDCNDEGVYFVEAAAKIHLNEFL 114
                  + LK +LS ALV FYP+AG+L  +      ++CN EGV FVEA +   +++F 
Sbjct: 59  -------KVLKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFG 111

Query: 115 IQPDHNLIYKFFPVDGNEQRGQIAGAHVAKVQVTSFACGGLVICACISHAFGDGTSFSSF 174
                  + +  P     Q   I+   +  +QVT F  GG+ +   + H   DG S   F
Sbjct: 112 DFAPTLELRRLIPAVDYSQ--GISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHF 169

Query: 175 MKAWAATARN 184
           + +W+  AR 
Sbjct: 170 INSWSDMARG 179



 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 12/135 (8%)

Query: 287 TLLSHAVNLRSKARPPLSENLIGNIVWKTNALCTEEEVDLDVLVW----QLREALSKFDG 342
           T L  A + R++ RP L     GN+++    +    +++    VW    ++ +AL++ D 
Sbjct: 283 TKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKP-VWYAASKIHDALARMDN 341

Query: 343 DFVKSLQGVGGLLKLSEDIKCEAE-AYSDAKNKIMFSSWSTFGFYGINFGWGKPIWVSGA 401
           D+++S       L+L  D+K     A++     +  +SW     +  +FGWG+PI++   
Sbjct: 342 DYLRSALD---YLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPG 398

Query: 402 CL---GGSIVESSPT 413
            +   G S +  SPT
Sbjct: 399 GIAYEGLSFILPSPT 413


>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
           (Ntmat1) Complexed With Malonyl-Coa
          Length = 453

 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 136/383 (35%), Gaps = 48/383 (12%)

Query: 40  RVLYY--PLNQDDLSSTIDIDHIVSKRLQQLKQSLSEALVRFYPLAGKLT--NNFS---- 91
           R+L+Y  P+++ D   TI         +  LK SLS  L  + PLAG +    ++S    
Sbjct: 39  RILFYKLPISRPDFVQTI---------IPTLKDSLSLTLKYYLPLAGNVACPQDWSGYPE 89

Query: 92  ---VDCNDEGVYFVEAAAKIHLNEFLIQPDHNLIYKFFPVDGNEQRGQ-IAGAHVAKVQV 147
              V  N   V F E+    +        +    Y F P     +    +  A V  +QV
Sbjct: 90  LRYVTGNSVSVIFSESDXDFNYLIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQV 149

Query: 148 TSFACGGLVICACISHAFGDGTSFSSFMKAWAATARNKTSEE-EAIYICPNYDASSLFPP 206
           T F   G+ I     H  GDG +   F++AWA   +    E+  A    P YD S +  P
Sbjct: 150 TLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKDP 209

Query: 207 N--DGDLFHQLKATSRASFGRFFETGKFVVRRFVFDXXXXXXXXXXXXSSRVQNPTRVEV 264
           N     ++++ K            T    VR                  +R    T V  
Sbjct: 210 NGVGXSIWNEXKKYKHXXKXSDVVTPPDKVRGTFIITRHDIGKLKNLVLTRRPKLTHVTS 269

Query: 265 VSATLSKSVMTAFKTRSGSLKPT------LLSHAVNLRSKARPPLSENLIGNIVWKTNAL 318
            + T +       K+ + + +            A + R++  PPL  +  GN +     +
Sbjct: 270 FTVTCAYVWTCIIKSEAATGEEIDENGXEFFGCAADCRAQFNPPLPPSYFGNAL--VGYV 327

Query: 319 CTEEEVDL------DVLVWQLREALSKFDGDFVKSLQGVGGLLKLSEDIKCEAEAYSDAK 372
               +VDL       + V  + EA+ K   D    L   G   K  + +        DAK
Sbjct: 328 ARTRQVDLAGKEGFTIAVELIGEAIRKRXKDEEWILS--GSWFKEYDKV--------DAK 377

Query: 373 NKIMFSSWSTFGFYGINFGWGKP 395
             +  +       Y  +FGWG+P
Sbjct: 378 RSLSVAGSPKLDLYAADFGWGRP 400


>pdb|3H6S|E Chain E, Strucure Of Clitocypin - Cathepsin V Complex
 pdb|3H6S|F Chain F, Strucure Of Clitocypin - Cathepsin V Complex
 pdb|3H6S|G Chain G, Strucure Of Clitocypin - Cathepsin V Complex
 pdb|3H6S|H Chain H, Strucure Of Clitocypin - Cathepsin V Complex
          Length = 152

 Score = 28.9 bits (63), Expect = 5.6,   Method: Composition-based stats.
 Identities = 10/13 (76%), Positives = 13/13 (100%)

Query: 119 HNLIYKFFPVDGN 131
           +NL+YKFFPVDG+
Sbjct: 128 NNLVYKFFPVDGS 140


>pdb|2JO7|A Chain A, Solution Structure Of The Adhesion Protein Bd37 From
           Babesia Divergens
          Length = 224

 Score = 28.5 bits (62), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 354 LLKLSEDIKCEAEAYSDAK-NKIMFSSWST 382
           LLK SED+K E E +S+AK  + + SS  T
Sbjct: 110 LLKFSEDLKAEQELHSEAKGGEALLSSMKT 139


>pdb|3AFO|A Chain A, Crystal Structure Of Yeast Nadh Kinase Complexed With Nadh
 pdb|3AFO|B Chain B, Crystal Structure Of Yeast Nadh Kinase Complexed With Nadh
          Length = 388

 Score = 28.1 bits (61), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 16/73 (21%), Positives = 38/73 (52%)

Query: 264 VVSATLSKSVMTAFKTRSGSLKPTLLSHAVNLRSKARPPLSENLIGNIVWKTNALCTEEE 323
           +VS  +   +MT    RS S +P +L H+ ++R K    L++  + ++V  +     +++
Sbjct: 251 IVSPLVPAILMTPICPRSLSFRPLILPHSSHIRIKIGSKLNQKPVNSVVKLSVDGIPQQD 310

Query: 324 VDLDVLVWQLREA 336
           +D+   ++ + E 
Sbjct: 311 LDVGDEIYVINEV 323


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,148,398
Number of Sequences: 62578
Number of extensions: 531265
Number of successful extensions: 1156
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1122
Number of HSP's gapped (non-prelim): 16
length of query: 460
length of database: 14,973,337
effective HSP length: 102
effective length of query: 358
effective length of database: 8,590,381
effective search space: 3075356398
effective search space used: 3075356398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)