BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037129
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 73/176 (41%), Gaps = 25/176 (14%)
Query: 52 LTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDI 111
L +T LHI E V E + C + K TPLHVAAK+G +
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEASQAC------MTKKGFTPLHVAAKYGKVRV 161
Query: 112 VRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDP 171
L+ER H N K T LH AV H N+D+V++L
Sbjct: 162 AELLLER---DAHPNA---------------AGKNGLTPLHVAVHHNNLDIVKLLLPRG- 202
Query: 172 DYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSYA 227
P+S G TPL++AA+ + +LL+ S + E G T LH AA +A
Sbjct: 203 GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA 258
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 19/130 (14%)
Query: 93 NAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALH 152
N K +TPLH+AA+ GH+++ ++L++ +++V A K+ T LH
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLLQN-----------KAKVNAKA-------KDDQTPLH 85
Query: 153 EAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGP 212
A + ++V++L + + + P A G TPL++AA VLALLE S +
Sbjct: 86 CAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK 144
Query: 213 NGKTALHAAA 222
G T LH AA
Sbjct: 145 KGFTPLHVAA 154
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 16/144 (11%)
Query: 98 TPLHVAAKFGHSDIVRFLVER---------AKLTQHENEELESRVGAAWQIIR------M 142
TPLH+AA+ GH+++V L+ + + LT E V A +I+
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA 306
Query: 143 TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLE 202
T + T LH A + N+ +V+ L + D + G +PL+ AA+ +++V LL+
Sbjct: 307 TTRMGYTPLHVASHYGNIKLVKFLLQHQADV-NAKTKLGYSPLHQAAQQGHTDIVTLLLK 365
Query: 203 NRTSVSHEGPNGKTALHAAAMRSY 226
N S + +G T L A Y
Sbjct: 366 NGASPNEVSSDGTTPLAIAKRLGY 389
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 26/173 (15%)
Query: 16 SNREIKQQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVST 75
+N E Q + P+ AA G++E + ++ L K+ T LH+ ++QE
Sbjct: 238 ANAESVQGVTPLHL-AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHL--VAQEGH---- 290
Query: 76 KFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGA 135
VA++L K +++ TPLHVA+ +G+ +V+FL+ QH+ +
Sbjct: 291 VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL------QHQAD-------- 336
Query: 136 AWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMA 188
+ K + LH+A + D+V +L K P ++ G TPL +A
Sbjct: 337 ----VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIA 384
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
T LH A ++ +V+ L + P +N +TPL+MAA + + + LL+N+ V+
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 209 HEGPNGKTALHAAA 222
+ + +T LH AA
Sbjct: 75 AKAKDDQTPLHCAA 88
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 19/129 (14%)
Query: 98 TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
TPLH+AA+ GH ++V+ L+E A + +K T LH A +
Sbjct: 4 TPLHLAARNGHLEVVKLLLE------------------AGADVNAKDKNGRTPLHLAARN 45
Query: 158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTA 217
+++VV++L + D N G+TPL++AA + +V LLE V+ + NG+T
Sbjct: 46 GHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104
Query: 218 LHAAAMRSY 226
LH AA +
Sbjct: 105 LHLAARNGH 113
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 25/127 (19%)
Query: 82 LEKCPLLL---LQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGA 135
LE LLL VNAKD TPLH+AA+ GH ++V+ L+E
Sbjct: 15 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE------------------ 56
Query: 136 AWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSN 195
A + +K T LH A + +++VV++L + D N G+TPL++AA +
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLE 115
Query: 196 MVLALLE 202
+V LLE
Sbjct: 116 VVKLLLE 122
Score = 33.5 bits (75), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 181 GKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY 226
G+TPL++AA + +V LLE V+ + NG+T LH AA +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 47
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 22/131 (16%)
Query: 91 QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA+DD TPLH+AA GH +IV L++ + V AA +K
Sbjct: 39 DVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHG-----------ADVNAA-------DKMG 80
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
+T LH A + ++++VE+L K D + + YG TPL++AA++ +V LL+ V
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVN-ATDTYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Query: 208 SHEGPNGKTAL 218
+ + GKTA
Sbjct: 140 NAQDKFGKTAF 150
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 109 SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
SD+ + L+E A+ Q + + GA + + T LH A ++++VE+L K
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD---VNAEDDSGKTPLHLAAIKGHLEIVEVLLK 68
Query: 169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAA 222
D +A+ G TPL++AA +V LL+N V+ G T LH AA
Sbjct: 69 HGADVN-AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAA 121
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 91 QVNAKD---DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA D DTPLH+AA +GH +IV L++ GA + T+
Sbjct: 72 DVNAADKMGDTPLHLAALYGHLEIVEVLLKN---------------GAD---VNATDTYG 113
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
T LH A ++++VE+L K D + + +GKT ++ ++ + ++
Sbjct: 114 FTPLHLAADAGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGNEDL 161
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 161 DVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHA 220
D V IL D + ++ GKTPL++AA +V LL++ V+ G T LH
Sbjct: 28 DEVRILMANGADVN-AEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHL 86
Query: 221 AAMRSY 226
AA+ +
Sbjct: 87 AALYGH 92
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 177 ANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY 226
++ GK L AA + + V L+ N V+ E +GKT LH AA++ +
Sbjct: 11 GSDLGK-KLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGH 59
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 17/149 (11%)
Query: 93 NAKDDTPLHVAAKFGHSDIVRFLVERAKL----------------TQHENEELESRVGAA 136
+A+ T LH+AAK GH ++V++L+ ++ T++++ +L + +
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
I + + E+N LH A VD+ EIL D ++ N +G +PL++AA +
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDC 192
Query: 197 VLALLENRTSVSHEGPNGKTALHAAAMRS 225
V+ L + V+ + G+T L A++ S
Sbjct: 193 VVLFLSRDSDVTLKNKEGETPLQCASLNS 221
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 21/144 (14%)
Query: 98 TPLHVAAKFGHSDIVRFLV------------ERAKLTQ-HENEELES-----RVGAAWQI 139
+PLH AA+ GH DI LV +R L + EN LE+ + GA +
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA---L 69
Query: 140 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLA 199
+ + E +T LH A + +VV+ L ++ G TP+ A E + ++V
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129
Query: 200 LLENRTSVSHEGPNGKTALHAAAM 223
LL + ++ LH AA
Sbjct: 130 LLSKGSDINIRDNEENICLHWAAF 153
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 20/117 (17%)
Query: 48 IKSLLTAKTENTILHINIISQERENVSTKF--------VAEILEKCPLLLLQVNAKDDTP 99
+K LL+ ++ INI E EN+ + +AEIL L VN D+P
Sbjct: 127 VKLLLSKGSD-----INIRDNE-ENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSP 180
Query: 100 LHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAA------WQIIRMTNKEKNTA 150
LH+AA+ D V + R +N+E E+ + A W ++M+ +++A
Sbjct: 181 LHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDSA 237
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 140 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLA 199
+M ++ K + LH A +VD+ +L + + + + +TPL AAE+ V
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ-RTPLMEAAENNHLEAVKY 62
Query: 200 LLENRTSVSHEGPNGKTALHAAAMRSY 226
L++ V + G T LH AA + +
Sbjct: 63 LIKAGALVDPKDAEGSTCLHLAAKKGH 89
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 22/130 (16%)
Query: 92 VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
VNA DD TPLH+AA GH +IV L++ ++ +R W
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA-------DVNARDTDGW----------- 81
Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
T LH A + ++++VE+L K D + + YG TPL++AA+ +V LL++ V+
Sbjct: 82 TPLHLAADNGHLEIVEVLLKYGADVN-AQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 209 HEGPNGKTAL 218
+ GKTA
Sbjct: 141 AQDKFGKTAF 150
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 109 SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
SD+ + L+E A+ Q + + GA + + + +T LH A + ++VE+L K
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD---VNAHDDQGSTPLHLAAWIGHPEIVEVLLK 68
Query: 169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY 226
D + + G TPL++AA++ +V LL+ V+ + G T LH AA R +
Sbjct: 69 HGADVN-ARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGH 125
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 22/131 (16%)
Query: 91 QVNAKDDT---PLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA+D T PLH+AA FGH +IV L++ + + +G
Sbjct: 39 DVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA-----DVNAKDSLGV------------ 81
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
T LH A ++++VE+L K D S +++G TPL++AA+ +V LL+N V
Sbjct: 82 -TPLHLAARRGHLEIVEVLLKNGADVNAS-DSHGFTPLHLAAKRGHLEIVEVLLKNGADV 139
Query: 208 SHEGPNGKTAL 218
+ + GKTA
Sbjct: 140 NAQDKFGKTAF 150
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 19/124 (15%)
Query: 103 AAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDV 162
AA+ G D VR L+ ++ +R W T LH A ++++
Sbjct: 21 AARAGQDDEVRILMANGA-------DVNARDFTGW-----------TPLHLAAHFGHLEI 62
Query: 163 VEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAA 222
VE+L K D + ++ G TPL++AA +V LL+N V+ +G T LH AA
Sbjct: 63 VEVLLKNGADVN-AKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAA 121
Query: 223 MRSY 226
R +
Sbjct: 122 KRGH 125
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 22/131 (16%)
Query: 91 QVNAKD---DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA+D DTPLH+AA+ GH +IV L++ GA + +
Sbjct: 39 DVNAEDTYGDTPLHLAARVGHLEIVEVLLKN---------------GADVNALDFSG--- 80
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
+T LH A ++++VE+L K D + + G TPL++AA++ +V LL+ V
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVN-ADDTIGSTPLHLAADTGHLEIVEVLLKYGADV 139
Query: 208 SHEGPNGKTAL 218
+ + GKTA
Sbjct: 140 NAQDKFGKTAF 150
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 109 SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
SD+ + L+E A+ Q + + GA + + +T LH A ++++VE+L K
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD---VNAEDTYGDTPLHLAARVGHLEIVEVLLK 68
Query: 169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAA 222
D + + G TPL++AA+ +V LL+ V+ + G T LH AA
Sbjct: 69 NGADVN-ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAA 121
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 161 DVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHA 220
D V IL D + + YG TPL++AA +V LL+N V+ +G T LH
Sbjct: 28 DEVRILMANGADVN-AEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHL 86
Query: 221 AAMRSY 226
AA R +
Sbjct: 87 AAKRGH 92
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 91 QVNAKD---DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA D TPLH+AAK GH +IV L+ + GA + +
Sbjct: 72 DVNALDFSGSTPLHLAAKRGHLEIVEVLL---------------KYGAD---VNADDTIG 113
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
+T LH A ++++VE+L K D + + +GKT ++ ++ + ++
Sbjct: 114 STPLHLAADTGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGNEDL 161
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 22/131 (16%)
Query: 91 QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNAKD TPLH+AA+ GH +IV L++ A + +K+
Sbjct: 39 DVNAKDKDGYTPLHLAAREGHLEIVEVLLK------------------AGADVNAKDKDG 80
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
T LH A ++++VE+L K D + + G TPL++AA +V LL+ V
Sbjct: 81 YTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 139
Query: 208 SHEGPNGKTAL 218
+ + GKTA
Sbjct: 140 NAQDKFGKTAF 150
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 109 SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
SD+ + L+E A+ Q + + GA + +K+ T LH A ++++VE+L K
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLK 68
Query: 169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY 226
D + + G TPL++AA +V LL+ V+ + +G T LH AA +
Sbjct: 69 AGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 125
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 22/131 (16%)
Query: 91 QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA D TPLH+AA +GH +IV L++ GA I +
Sbjct: 39 DVNATDASGLTPLHLAATYGHLEIVEVLLKH---------------GADVNAIDIXG--- 80
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
+T LH A ++++VE+L K D + + +G TPL++AA +V LL++ V
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 208 SHEGPNGKTAL 218
+ + GKTA
Sbjct: 140 NAQDKFGKTAF 150
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 109 SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
SD+ + L+E A+ Q + + GA + T+ T LH A + ++++VE+L K
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD---VNATDASGLTPLHLAATYGHLEIVEVLLK 68
Query: 169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY 226
D + + G TPL++AA +V LL++ V+ G T LH AA+ +
Sbjct: 69 HGADVN-AIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGH 125
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 22/109 (20%)
Query: 91 QVNAKD---DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA D TPLH+AA GH +IV L++ GA + +
Sbjct: 72 DVNAIDIXGSTPLHLAALIGHLEIVEVLLKH---------------GAD---VNAVDTWG 113
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
+T LH A ++++VE+L K D + + +GKT ++ ++ + ++
Sbjct: 114 DTPLHLAAIMGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDL 161
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 22/131 (16%)
Query: 91 QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA D TPLH+AA +GH +IV L++ GA I +
Sbjct: 39 DVNATDASGLTPLHLAATYGHLEIVEVLLKH---------------GADVNAIDIMG--- 80
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
+T LH A ++++VE+L K D + + +G TPL++AA +V LL++ V
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
Query: 208 SHEGPNGKTAL 218
+ + GKTA
Sbjct: 140 NAQDKFGKTAF 150
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 109 SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
SD+ + L+E A+ Q + + GA + T+ T LH A + ++++VE+L K
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD---VNATDASGLTPLHLAATYGHLEIVEVLLK 68
Query: 169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY 226
D + + G TPL++AA +V LL++ V+ G T LH AA+ +
Sbjct: 69 HGADVN-AIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGH 125
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 22/109 (20%)
Query: 91 QVNAKD---DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA D TPLH+AA GH +IV L++ GA + +
Sbjct: 72 DVNAIDIMGSTPLHLAALIGHLEIVEVLLKH---------------GAD---VNAVDTWG 113
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
+T LH A ++++VE+L K D + + +GKT ++ ++ + ++
Sbjct: 114 DTPLHLAAIMGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDL 161
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 71 ENVSTKFVAEILEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENE 127
EN + V ++LE VNA D TPLH+AA+ GH ++V+ L L+Q +
Sbjct: 13 ENGNKDRVKDLLENGA----DVNASDSDGKTPLHLAAENGHKEVVKLL-----LSQGADP 63
Query: 128 ELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYM 187
+ G T LH A + + +VV++L + D P + ++ GKTPL++
Sbjct: 64 NAKDSDG-------------KTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHL 109
Query: 188 AAESRSSNMVLALLENRTSVSHEGPNGKTALHAA 221
AAE+ +V LL + +G+T L A
Sbjct: 110 AAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLA 143
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 140 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLA 199
+ ++ + T LH A + + +VV++L + D P + ++ GKTPL++AAE+ +V
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKL 88
Query: 200 LLENRTSVSHEGPNGKTALHAAAMRSY 226
LL + + +GKT LH AA +
Sbjct: 89 LLSQGADPNAKDSDGKTPLHLAAENGH 115
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 185 LYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY 226
L AAE+ + + V LLEN V+ +GKT LH AA +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGH 49
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 22/128 (17%)
Query: 92 VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
VNAKD TPLH+AA+ GH +IV L++ A + +K+
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLK------------------AGADVNAKDKDGY 69
Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
T LH A ++++VE+L K D + + G TPL++AA +V LL+ V+
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 209 HEGPNGKT 216
+ GKT
Sbjct: 129 AQDKFGKT 136
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 110 DIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKE 169
D+ + L+E A+ Q + + GA + +K+ T LH A ++++VE+L K
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKA 57
Query: 170 DPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY 226
D + + G TPL++AA +V LL+ V+ + +G T LH AA +
Sbjct: 58 GADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 113
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 22/129 (17%)
Query: 91 QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNAKD TPLH+AA+ GH +IV L++ A + +K+
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLK------------------AGADVNAKDKDG 68
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
T LH A ++++VE+L K D + + G TPL++AA +V LL+ V
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 208 SHEGPNGKT 216
+ + GKT
Sbjct: 128 NAQDKFGKT 136
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 110 DIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKE 169
D+ + L+E A+ Q + + GA + +K+ T LH A ++++VE+L K
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLKA 57
Query: 170 DPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY 226
D + + G TPL++AA +V LL+ V+ + +G T LH AA +
Sbjct: 58 GADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 113
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 109 SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
SD+ R L+E A+ Q + + GA + + T LH A ++++VE+L K
Sbjct: 12 SDLGRKLLEAARAGQDDEVRILMANGAD---VNAADNTGTTPLHLAAYSGHLEIVEVLLK 68
Query: 169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY 226
D S + +G TPL++AA +V LL+N V+ +G T LH AA Y
Sbjct: 69 HGADVDAS-DVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGY 125
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 22/131 (16%)
Query: 91 QVNAKDDT---PLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA D+T PLH+AA GH +IV L++ + ++
Sbjct: 39 DVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA------------------DVDASDVFG 80
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
T LH A ++++VE+L K D + ++ G TPL++AA+ +V LL++ V
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVN-AMDSDGMTPLHLAAKWGYLEIVEVLLKHGADV 139
Query: 208 SHEGPNGKTAL 218
+ + GKTA
Sbjct: 140 NAQDKFGKTAF 150
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 19/99 (19%)
Query: 98 TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
TPLH+AA +GH +IV L++ + + + T LH A
Sbjct: 82 TPLHLAAYWGHLEIVEVLLKNGA------------------DVNAMDSDGMTPLHLAAKW 123
Query: 158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
+++VE+L K D + + +GKT ++ ++ + ++
Sbjct: 124 GYLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDL 161
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 21/81 (25%)
Query: 91 QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA D TPLH+AAK+G+ +IV L++ + +K
Sbjct: 105 DVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA------------------DVNAQDKFG 146
Query: 148 NTALHEAVCHQNVDVVEILTK 168
TA ++ + N D+ EIL K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 22/131 (16%)
Query: 91 QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA D TPLH+AA FGH +IV L++ + + +G
Sbjct: 39 DVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA-----DVNADDSLGV------------ 81
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
T LH A +++VVE+L K D + +N G TPL++AA +V LL++ V
Sbjct: 82 -TPLHLAADRGHLEVVEVLLKNGADVNANDHN-GFTPLHLAANIGHLEIVEVLLKHGADV 139
Query: 208 SHEGPNGKTAL 218
+ + GKTA
Sbjct: 140 NAQDKFGKTAF 150
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 109 SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
SD+ + L+E A+ Q + + GA + ++ T LH A ++++VE+L K
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD---VNASDHVGWTPLHLAAYFGHLEIVEVLLK 68
Query: 169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAA 222
D + ++ G TPL++AA+ +V LL+N V+ NG T LH AA
Sbjct: 69 NGADVN-ADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAA 121
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 161 DVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHA 220
D V IL D S ++ G TPL++AA +V LL+N V+ + G T LH
Sbjct: 28 DEVRILMANGADVNAS-DHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHL 86
Query: 221 AAMRSY 226
AA R +
Sbjct: 87 AADRGH 92
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 22/131 (16%)
Query: 91 QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA D+ TPLH+AA GH +IV L++ GA +T
Sbjct: 39 DVNATDNDGYTPLHLAASNGHLEIVEVLLKN---------------GADVNASDLTGI-- 81
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
T LH A ++++VE+L K D + +N G TPL++AA+ +V LL++ V
Sbjct: 82 -TPLHLAAATGHLEIVEVLLKHGADVN-AYDNDGHTPLHLAAKYGHLEIVEVLLKHGADV 139
Query: 208 SHEGPNGKTAL 218
+ + GKTA
Sbjct: 140 NAQDKFGKTAF 150
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 109 SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
SD+ + L+E A+ Q + + GA + T+ + T LH A + ++++VE+L K
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD---VNATDNDGYTPLHLAASNGHLEIVEVLLK 68
Query: 169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY 226
D S + G TPL++AA + +V LL++ V+ +G T LH AA +
Sbjct: 69 NGADVNAS-DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGH 125
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 109 SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
SD+ + L+E A+ Q + + GA + T+ +T LH A ++++VE+L K
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD---VNATDWLGHTPLHLAAKTGHLEIVEVLLK 68
Query: 169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY 226
D + +NYG TPL++AA++ +V LL++ V+ + G T LH AA +
Sbjct: 69 YGADVN-AWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGH 125
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 62/132 (46%), Gaps = 24/132 (18%)
Query: 91 QVNAKD---DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA D TPLH+AAK GH +IV L++ AW +
Sbjct: 39 DVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN------------AW------DNYG 80
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNY-GKTPLYMAAESRSSNMVLALLENRTS 206
T LH A + ++++VE+L K D +A +Y G TPL++AA +V LL+
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGAD--VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD 138
Query: 207 VSHEGPNGKTAL 218
V+ + GKTA
Sbjct: 139 VNAQDKFGKTAF 150
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 26/154 (16%)
Query: 71 ENVSTKFVAEILEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENE 127
EN + V +++E VNA D TPLH AAK GH +IV+ L+ +
Sbjct: 13 ENGNKDRVKDLIENGA----DVNASDSDGRTPLHYAAKEGHKEIVKLLISKG-------- 60
Query: 128 ELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYM 187
+ + + T LH A + ++V++L + D + ++ G+TPL+
Sbjct: 61 ----------ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHY 109
Query: 188 AAESRSSNMVLALLENRTSVSHEGPNGKTALHAA 221
AA+ +V L+ V+ +G+T L A
Sbjct: 110 AAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLA 143
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 140 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLA 199
+ ++ + T LH A + ++V++L + D + ++ G+TPL+ AA+ +V
Sbjct: 30 VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKL 88
Query: 200 LLENRTSVSHEGPNGKTALHAAAMRSY 226
L+ V+ + +G+T LH AA +
Sbjct: 89 LISKGADVNAKDSDGRTPLHYAAKEGH 115
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 151 LHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHE 210
L EA + N D V+ L + D S ++ G+TPL+ AA+ +V L+ V+ +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSD-GRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 211 GPNGKTALHAAAMRSY 226
+G+T LH AA +
Sbjct: 67 DSDGRTPLHYAAKEGH 82
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 26/151 (17%)
Query: 71 ENVSTKFVAEILEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENE 127
EN + V +++E VNA D TPLH AA+ GH ++V+ L+ +
Sbjct: 13 ENGNKDRVKDLIENGA----DVNASDSDGRTPLHHAAENGHKEVVKLLISKG-------- 60
Query: 128 ELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYM 187
+ + + T LH A + + +VV++L + D + ++ G+TPL+
Sbjct: 61 ----------ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHH 109
Query: 188 AAESRSSNMVLALLENRTSVSHEGPNGKTAL 218
AAE+ +V L+ V+ +G+T L
Sbjct: 110 AAENGHKEVVKLLISKGADVNTSDSDGRTPL 140
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 140 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLA 199
+ ++ + T LH A + + +VV++L + D + ++ G+TPL+ AAE+ +V
Sbjct: 30 VNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKL 88
Query: 200 LLENRTSVSHEGPNGKTALHAAAMRSY 226
L+ V+ + +G+T LH AA +
Sbjct: 89 LISKGADVNAKDSDGRTPLHHAAENGH 115
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 153 EAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGP 212
EA + N D V+ L + D S ++ G+TPL+ AAE+ +V L+ V+ +
Sbjct: 10 EAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS 68
Query: 213 NGKTALHAAAMRSY 226
+G+T LH AA +
Sbjct: 69 DGRTPLHHAAENGH 82
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 19/121 (15%)
Query: 98 TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
TPLH+AA GH +IV L+ R GA + + T LH A
Sbjct: 37 TPLHMAAAVGHLEIVEVLL---------------RNGAD---VNAVDTNGTTPLHLAASL 78
Query: 158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTA 217
++++VE+L K D + + G TPLY+AA +V LL++ V+ + GKTA
Sbjct: 79 GHLEIVEVLLKYGADVN-AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTA 137
Query: 218 L 218
Sbjct: 138 F 138
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 161 DVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHA 220
D V IL D + ++YG+TPL+MAA +V LL N V+ NG T LH
Sbjct: 16 DEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHL 74
Query: 221 AA 222
AA
Sbjct: 75 AA 76
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 22/98 (22%)
Query: 91 QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA D TPLH+AA GH +IV L+ + GA + +
Sbjct: 60 DVNAVDTNGTTPLHLAASLGHLEIVEVLL---------------KYGAD---VNAKDATG 101
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPL 185
T L+ A ++++VE+L K D + + +GKT
Sbjct: 102 ITPLYLAAYWGHLEIVEVLLKHGADVN-AQDKFGKTAF 138
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 24/132 (18%)
Query: 91 QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA D TPLH+ GH +I+ L++ A + ++K
Sbjct: 39 DVNANDWFGITPLHLVVNNGHLEIIEVLLKYAA------------------DVNASDKSG 80
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNY-GKTPLYMAAESRSSNMVLALLENRTS 206
T LH A ++++VE+L K D +A +Y G TPL++AAE +V LL+
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADV--NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD 138
Query: 207 VSHEGPNGKTAL 218
V+ + GKTA
Sbjct: 139 VNAQDKFGKTAF 150
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 109 SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
SD+ + L+E A+ Q + + GA + + T LH V + +++++E+L K
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD---VNANDWFGITPLHLVVNNGHLEIIEVLLK 68
Query: 169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAA 222
D +++ G TPL++AA +V LL+ V+ G T LH AA
Sbjct: 69 YAADVN-ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAA 121
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 161 DVVEILTKEDPDYPYSANNY-GKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALH 219
D V IL D +AN++ G TPL++ + ++ LL+ V+ +G T LH
Sbjct: 28 DEVRILMANGADV--NANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLH 85
Query: 220 AAAMRSY 226
AA R +
Sbjct: 86 LAAYRGH 92
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 21/92 (22%)
Query: 80 EILEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAA 136
EI+E VNA D TPLH+AA+ GH +IV L+ + GA
Sbjct: 94 EIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLL---------------KYGAD 138
Query: 137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
+ +K TA ++ + N D+ EIL K
Sbjct: 139 ---VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 19/105 (18%)
Query: 98 TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
TPLH+AA+ GH ++V+ L+E A + +K T LH A +
Sbjct: 4 TPLHLAARNGHLEVVKLLLE------------------AGADVNAKDKNGRTPLHLAARN 45
Query: 158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLE 202
+++VV++L + D N G+TPL++AA + +V LLE
Sbjct: 46 GHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLE 89
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
T LH A + +++VV++L + D N G+TPL++AA + +V LLE V+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 209 HEGPNGKTALHAAAMRSY 226
+ NG+T LH AA +
Sbjct: 63 AKDKNGRTPLHLAARNGH 80
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 181 GKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY 226
G+TPL++AA + +V LLE V+ + NG+T LH AA +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 47
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 22/131 (16%)
Query: 91 QVNAKD---DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA D TPLH+AA +GH +IV L++ + +
Sbjct: 39 DVNAADVVGWTPLHLAAYWGHLEIVEVLLKNG------------------ADVNAYDTLG 80
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
+T LH A ++++VE+L K D +N G TPL++AA +V LL+ V
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGADVNAKDDN-GITPLHLAANRGHLEIVEVLLKYGADV 139
Query: 208 SHEGPNGKTAL 218
+ + GKTA
Sbjct: 140 NAQDKFGKTAF 150
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
T LH A ++++VE+L K D + + G TPL++AA +V LL+N V+
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVN-AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 209 HEGPNGKTALHAAAMRSY 226
+ NG T LH AA R +
Sbjct: 108 AKDDNGITPLHLAANRGH 125
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 26/154 (16%)
Query: 71 ENVSTKFVAEILEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENE 127
EN + V ++LE NA D TPLH AA+ GH +IV+ L+ +
Sbjct: 13 ENGNKDRVKDLLENG----ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN---- 64
Query: 128 ELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYM 187
+ + T LH A + + ++V++L + D P + ++ G+TPL+
Sbjct: 65 --------------AKDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHY 109
Query: 188 AAESRSSNMVLALLENRTSVSHEGPNGKTALHAA 221
AAE+ +V LL + +G+T L A
Sbjct: 110 AAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLA 143
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 143 TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLE 202
++ + T LH A + + ++V++L + D P + ++ G+TPL+ AAE+ +V LL
Sbjct: 33 SDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLS 91
Query: 203 NRTSVSHEGPNGKTALHAAAMRSY 226
+ + +G+T LH AA +
Sbjct: 92 KGADPNAKDSDGRTPLHYAAENGH 115
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 153 EAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGP 212
EA + N D V+ L + D P ++++ G+TPL+ AAE+ +V LL + +
Sbjct: 10 EAAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDS 68
Query: 213 NGKTALHAAAMRSY 226
+G+T LH AA +
Sbjct: 69 DGRTPLHYAAENGH 82
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 109 SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
SD+ + L+E A+ Q + + GA + +++ NT LH A + ++++VE+L K
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD---VNANDRKGNTPLHLAADYDHLEIVEVLLK 68
Query: 169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTAL 218
D + +N G TPL++AA +V LL++ V+ + GKTA
Sbjct: 69 HGADVN-AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 21/81 (25%)
Query: 91 QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA D+ TPLH+AA FGH +IV L++ GA + +K
Sbjct: 72 DVNAHDNDGSTPLHLAALFGHLEIVEVLLKH---------------GAD---VNAQDKFG 113
Query: 148 NTALHEAVCHQNVDVVEILTK 168
TA ++ + N D+ EIL K
Sbjct: 114 KTAFDISIDNGNEDLAEILQK 134
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 161 DVVEILTKEDPDYPYSANNY-GKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALH 219
D V IL D +AN+ G TPL++AA+ +V LL++ V+ +G T LH
Sbjct: 28 DEVRILMANGADV--NANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLH 85
Query: 220 AAAMRSY 226
AA+ +
Sbjct: 86 LAALFGH 92
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 4/114 (3%)
Query: 109 SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
SD+ + L+E A+ Q + + GA + T T LH A ++++VE+L K
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGL---TPLHLAAVSGHLEIVEVLLK 68
Query: 169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAA 222
D +A+ YG TPL++AA + +V LL+ V+ G T LH AA
Sbjct: 69 HGADVD-AADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAA 121
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 28/134 (20%)
Query: 91 QVNAKDDT---PLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA D+T PLH+AA GH +IV L++ + V AA +
Sbjct: 39 DVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHG-----------ADVDAA-------DVYG 80
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNY---GKTPLYMAAESRSSNMVLALLENR 204
T LH A ++++VE+L K Y N + G TPL++AA+ +V LL+
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLK----YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYG 136
Query: 205 TSVSHEGPNGKTAL 218
V+ + GKTA
Sbjct: 137 ADVNAQDKFGKTAF 150
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 161 DVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHA 220
D V IL D + +N G TPL++AA S +V LL++ V G T LH
Sbjct: 28 DEVRILIANGADVN-AVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHL 86
Query: 221 AAMRSY 226
AAM +
Sbjct: 87 AAMTGH 92
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 137 WQI-IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSN 195
W++ + N + +T LH AV H++ ++V +L D G+TPL++A E+++++
Sbjct: 147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS 206
Query: 196 MVLALLENRTSVSHEGPNGKTALHAAAMR 224
++ LL+ + G+T L +A +R
Sbjct: 207 VLELLLKAGADPTARMYGGRTPLGSALLR 235
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 139 IIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYS--ANNYGKTPLYMAAESRSSNM 196
+ ++ +TALH AV HQ+ ++ L + Y N+ G+T L++AA ++
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60
Query: 197 VLALLENRTSVSHEGPNGKTALHAAA 222
V L V G TALH A
Sbjct: 61 VEKLYAAGAGVLVAERGGHTALHLAC 86
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 137 WQI-IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSN 195
W++ + N + +T LH AV H++ ++V +L D G+TPL++A E+++++
Sbjct: 147 WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS 206
Query: 196 MVLALLENRTSVSHEGPNGKTALHAAAMR 224
++ LL+ + G+T L +A +R
Sbjct: 207 VLELLLKAGADPTARMYGGRTPLGSALLR 235
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 139 IIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYS--ANNYGKTPLYMAAESRSSNM 196
+ ++ +TALH AV HQ+ ++ L + Y N+ G+T L++AA ++
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60
Query: 197 VLALLENRTSVSHEGPNGKTALHAAA 222
V L V G TALH A
Sbjct: 61 VEKLYAAGAGVLVAERGGHTALHLAC 86
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 109 SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
SD+ + L+E A+ Q + + + GA + + +T LH A ++++VE+L K
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILTANGAD---VNANDYWGHTPLHLAAMLGHLEIVEVLLK 68
Query: 169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTAL 218
D + N G+TPL++AA + +V LL++ V+ + GKTA
Sbjct: 69 NGADVNATGNT-GRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 161 DVVEILTKEDPDYPYSANNY-GKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALH 219
D V ILT D +AN+Y G TPL++AA +V LL+N V+ G G+T LH
Sbjct: 28 DEVRILTANGADV--NANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLH 85
Query: 220 AAAMRSY 226
AA +
Sbjct: 86 LAAWADH 92
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 22/109 (20%)
Query: 91 QVNAKD---DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA D TPLH+AA GH +IV L++ + T
Sbjct: 39 DVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA------------------DVNATGNTG 80
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
T LH A ++++VE+L K D + + +GKT ++ ++ + ++
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDL 128
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 24/132 (18%)
Query: 91 QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA+D TPLH+AA GH +IV L++ + +
Sbjct: 39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG------------------ADVNAVDHAG 80
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNY-GKTPLYMAAESRSSNMVLALLENRTS 206
T L A ++++VE+L K D +AN+ G TPL++AA +V LL+N
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADV--NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138
Query: 207 VSHEGPNGKTAL 218
V+ + GKTA
Sbjct: 139 VNAQDKFGKTAF 150
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 19/124 (15%)
Query: 103 AAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDV 162
AA+ G D VR L+ E+ + W T LH A + ++++
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDA-------SGW-----------TPLHLAAFNGHLEI 62
Query: 163 VEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAA 222
VE+L K D + ++ G TPL +AA +V LL+N V+ G T LH AA
Sbjct: 63 VEVLLKNGADVN-AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA 121
Query: 223 MRSY 226
M +
Sbjct: 122 MFGH 125
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 22/109 (20%)
Query: 91 QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA D TPL +AA FGH +IV L++ + + E
Sbjct: 72 DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG------------------ADVNANDMEG 113
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
+T LH A ++++VE+L K D + + +GKT ++ ++ + ++
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNGADVN-AQDKFGKTAFDISIDNGNEDL 161
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 21/81 (25%)
Query: 91 QVNAKD---DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA D TPLH+AA FGH +IV L++ + +K
Sbjct: 105 DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG------------------ADVNAQDKFG 146
Query: 148 NTALHEAVCHQNVDVVEILTK 168
TA ++ + N D+ EIL K
Sbjct: 147 KTAFDISIDNGNEDLAEILQK 167
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 127 EELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYS-ANNYGKTPL 185
+EL+ R+ A + T+++ TALH A + ++VE L + P + ++ G +PL
Sbjct: 20 DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPL 77
Query: 186 YMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRS 225
++AA + +V ALL V+ NG T LH AA ++
Sbjct: 78 HIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN 117
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 22/146 (15%)
Query: 80 EILEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAA 136
EI+E L + VN KDD +PLH+AA G +IV+ L+ + H N
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG---AHVN---------- 100
Query: 137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
N+ T LH A +N + ++ E P + ++Y T ++ AA + M
Sbjct: 101 -----AVNQNGCTPLHYAAS-KNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKM 154
Query: 197 VLALLENRTSVSHEGPNGKTALHAAA 222
V LL + S + + G T LH A
Sbjct: 155 VHILLFYKASTNIQDTEGNTPLHLAC 180
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 19/128 (14%)
Query: 98 TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
T LH A GH++IV FL++ +++ A W + LH A
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDD-------AGW-----------SPLHIAASA 83
Query: 158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTA 217
++V+ L + + + N G TPL+ AA + + LLE + + TA
Sbjct: 84 GXDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATA 142
Query: 218 LHAAAMRS 225
+H AA +
Sbjct: 143 MHRAAAKG 150
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 127 EELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYS-ANNYGKTPL 185
+EL+ R+ A + T+++ TALH A + ++VE L + P + ++ G +PL
Sbjct: 20 DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPL 77
Query: 186 YMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRS 225
++AA + +V ALL V+ NG T LH AA ++
Sbjct: 78 HIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN 117
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 22/146 (15%)
Query: 80 EILEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAA 136
EI+E L + VN KDD +PLH+AA G +IV+ L+ + H N
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG---AHVN---------- 100
Query: 137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
N+ T LH A +N + ++ E P + ++Y T ++ AA + M
Sbjct: 101 -----AVNQNGCTPLHYAAS-KNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKM 154
Query: 197 VLALLENRTSVSHEGPNGKTALHAAA 222
V LL + S + + G T LH A
Sbjct: 155 VHILLFYKASTNIQDTEGNTPLHLAC 180
Score = 33.5 bits (75), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 19/128 (14%)
Query: 98 TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
T LH A GH++IV FL++ +++ A W + LH A
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDD-------AGW-----------SPLHIAASA 83
Query: 158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTA 217
++V+ L + + + N G TPL+ AA + + LLE + + TA
Sbjct: 84 GRDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATA 142
Query: 218 LHAAAMRS 225
+H AA +
Sbjct: 143 MHRAAAKG 150
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 19/129 (14%)
Query: 97 DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVC 156
DTPLH+A G+ V LV L Q EL+ + N + T LH AV
Sbjct: 10 DTPLHIAVVQGNLPAVHRLV---NLFQQGGRELD-----------IYNNLRQTPLHLAVI 55
Query: 157 HQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRT--SVSHEGPN- 213
VV +L P + + +G+T ++A E RS + ALL++ ++ E N
Sbjct: 56 TTLPSVVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY 114
Query: 214 -GKTALHAA 221
G TALH A
Sbjct: 115 DGLTALHVA 123
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 144 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLEN 203
N + TALH AV + + V++L + D G++PL A E+ S +MV LL++
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172
Query: 204 RTSVSHEGPNGKTALHAAAMRS 225
+V+ + +G +ALH+A+ R
Sbjct: 173 GANVNAQMYSGSSALHSASGRG 194
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 27/177 (15%)
Query: 74 STKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELES-- 131
TK V EIL+ + +V+ + +TPL++A +I + L++R +N +S
Sbjct: 17 DTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPY 76
Query: 132 -RVGA-------AWQIIRMT------NKEKNTALHEAVCHQNVDVVEIL---TKEDPDYP 174
GA A+ + T N+ AL A ++D V++L +ED D+
Sbjct: 77 LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQ 136
Query: 175 YSANNYGKTPLYMAAESRSSN-----MVLALLENRTSVSHEGPNGKTALHAAAMRSY 226
N++G T L A R N +V L+EN S + +G+TA+ A + Y
Sbjct: 137 ---NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGY 190
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 22/148 (14%)
Query: 82 LEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQ 138
L K P L VN +PLHVAA G +D++ L++ + GA
Sbjct: 69 LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHG-----------ANAGA--- 114
Query: 139 IIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVL 198
N ++ LH A + VV+ L + P + G TPL A +V
Sbjct: 115 ----RNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVA 169
Query: 199 ALLENRTSVSHEGPNGKTALHAAAMRSY 226
LL++ S++ G TALH A + +
Sbjct: 170 LLLQHGASINASNNKGNTALHEAVIEKH 197
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 32/140 (22%)
Query: 54 AKTENTILHINIISQERENVSTKFVAEILEKC---PLLLLQV------NAKDDTPLHVAA 104
AK + L +N+ SQ+ S VA + + PLLL NA PLH+A
Sbjct: 70 AKVPASGLGVNVTSQD--GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLAC 127
Query: 105 KFGHSDIVRFLVE------RAKLT------------QHENEELESRVGAAWQIIRMTNKE 146
+ GH +V+ L++ + L+ HE L + GA+ I +N +
Sbjct: 128 QQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS---INASNNK 184
Query: 147 KNTALHEAVCHQNVDVVEIL 166
NTALHEAV ++V VVE+L
Sbjct: 185 GNTALHEAVIEKHVFVVELL 204
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 57/139 (41%), Gaps = 24/139 (17%)
Query: 92 VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
VN D+ TPL A+ FG + VRFL+E GA I+ KE+
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEW---------------GADPHILA---KERE 70
Query: 149 TALHEAVCHQNVDVVEILTKEDPDY-PYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
+AL A D+V +L + D D Y N G TPL A V ALL +
Sbjct: 71 SALSLASTGGYTDIVGLLLERDVDINIYDWN--GGTPLLYAVRGNHVKCVEALLARGADL 128
Query: 208 SHEGPNGKTALHAAAMRSY 226
+ E +G T + A Y
Sbjct: 129 TTEADSGYTPMDLAVALGY 147
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 22/146 (15%)
Query: 80 EILEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAA 136
EI+E L + VN KDD +PLH+AA G +IV+ L+ + GA
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK---------------GAQ 98
Query: 137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
+ N+ T LH A +N + ++ E P + ++Y T ++ AA + M
Sbjct: 99 ---VNAVNQNGCTPLHYAA-SKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKM 154
Query: 197 VLALLENRTSVSHEGPNGKTALHAAA 222
+ LL + S + + G T LH A
Sbjct: 155 IHILLYYKASTNIQDTEGNTPLHLAC 180
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 127 EELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYS-ANNYGKTPL 185
EEL+ + A + T+++ TALH A + ++VE L + P + ++ G +PL
Sbjct: 20 EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPL 77
Query: 186 YMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRS 225
++AA + +V ALL V+ NG T LH AA ++
Sbjct: 78 HIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKN 117
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 19/128 (14%)
Query: 98 TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
T LH A GH++IV FL++ +++ A W + LH A
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDD-------AGW-----------SPLHIAASA 83
Query: 158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTA 217
++V+ L + + N G TPL+ AA + + LLE + + TA
Sbjct: 84 GRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATA 142
Query: 218 LHAAAMRS 225
+H AA +
Sbjct: 143 MHRAAAKG 150
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 22/146 (15%)
Query: 80 EILEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAA 136
EI+E L + VN KDD +PLH+AA G +IV+ L+ + GA
Sbjct: 55 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK---------------GAQ 99
Query: 137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
+ N+ T LH A +N + ++ E P + ++Y T ++ AA + M
Sbjct: 100 ---VNAVNQNGCTPLHYAA-SKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKM 155
Query: 197 VLALLENRTSVSHEGPNGKTALHAAA 222
+ LL + S + + G T LH A
Sbjct: 156 IHILLYYKASTNIQDTEGNTPLHLAC 181
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 127 EELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYS-ANNYGKTPL 185
EEL+ + A + T+++ TALH A + ++VE L + P + ++ G +PL
Sbjct: 21 EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPL 78
Query: 186 YMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMR 224
++AA + +V ALL V+ NG T LH AA +
Sbjct: 79 HIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASK 117
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 19/128 (14%)
Query: 98 TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
T LH A GH++IV FL++ +++ A W + LH A
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDD-------AGW-----------SPLHIAASA 84
Query: 158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTA 217
++V+ L + + N G TPL+ AA + + LLE + + TA
Sbjct: 85 GRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATA 143
Query: 218 LHAAAMRS 225
+H AA +
Sbjct: 144 MHRAAAKG 151
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 57/139 (41%), Gaps = 24/139 (17%)
Query: 92 VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
VN D+ TPL A+ FG + VRFL+E GA I+ KE+
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEW---------------GADPHILA---KERE 70
Query: 149 TALHEAVCHQNVDVVEILTKEDPDYP-YSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
+AL A D+V +L + D D Y N G TPL A V ALL +
Sbjct: 71 SALSLASTGGYTDIVGLLLERDVDINIYDWN--GGTPLLYAVHGNHVKCVEALLARGADL 128
Query: 208 SHEGPNGKTALHAAAMRSY 226
+ E +G T + A Y
Sbjct: 129 TTEADSGYTPMDLAVALGY 147
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
T LH A ++++VE+L K D S +++G+TPL++AA +V LLE V+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNAS-DSWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 209 HEGPNGKTAL 218
+ GKTA
Sbjct: 108 AQDKFGKTAF 117
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 91 QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA DD TPLH+AAK GH +IV L++ GA + ++
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH---------------GAD---VNASDSWG 80
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
T LH A ++++VE+L + D + + +GKT ++ ++ + ++
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGNEDL 128
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 161 DVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHA 220
D V IL D + ++ G TPL++AA+ +V LL++ V+ G+T LH
Sbjct: 28 DEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHL 86
Query: 221 AA 222
AA
Sbjct: 87 AA 88
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 106 FGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEI 165
FG D+ + L+E A Q + + GA + T+ T LH A + +++VE+
Sbjct: 2 FGQ-DLGKKLLEAAAAGQDDEVRILMANGAD---VNATDDNGLTPLHLAAANGQLEIVEV 57
Query: 166 LTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRS 225
L K D S ++ G TPL++AA +V LL++ V+ G T LH AA+
Sbjct: 58 LLKNGADVNAS-DSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSG 116
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 30/154 (19%)
Query: 22 QQMDPIFFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEI 81
Q + AAAAG + + + T T LH+ + + E + E+
Sbjct: 4 QDLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLE------IVEV 57
Query: 82 LEKCPLLLLQVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQ 138
L K VNA D TPLH+AA GH +IV L++ ++ + A W
Sbjct: 58 LLKNGA---DVNASDSAGITPLHLAAYDGHLEIVEVLLKHGA-------DVNAYDRAGW- 106
Query: 139 IIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPD 172
T LH A +++VE+L K D
Sbjct: 107 ----------TPLHLAALSGQLEIVEVLLKHGAD 130
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 144 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLEN 203
N+E TALH A+C N +V+ L + S +++G TPL+ AA + + +AL+++
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASCNDTVICMALVQH 109
Query: 204 RTSV 207
++
Sbjct: 110 GAAI 113
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 109 SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
SD+ + L+E A+ Q + + GA + +++ T LH A ++++VE+L K
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD---VNALDEDGLTPLHLAAQLGHLEIVEVLLK 68
Query: 169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTAL 218
D + +N+G TPL++AA +V LL++ V+ + GKTA
Sbjct: 69 YGADVN-AEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 28/111 (25%)
Query: 92 VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
VNA D+ TPLH+AA+ GH +IV L+ + GA N E N
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLL---------------KYGAD------VNAEDN 78
Query: 149 ---TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
T LH A ++++VE+L K D + + +GKT ++ ++ + ++
Sbjct: 79 FGITPLHLAAIRGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDL 128
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 181 GKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY 226
G TPL++AA+ +V LL+ V+ E G T LH AA+R +
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGH 92
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
T LH A ++++VE+L K D S + +G+TPL++AA +V LLE V+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNAS-DIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 209 HEGPNGKTAL 218
+ GKTA
Sbjct: 108 AQDKFGKTAF 117
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 91 QVNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEK 147
VNA DD TPLH+AAK GH +IV L++ GA + ++
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH---------------GAD---VNASDIWG 80
Query: 148 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
T LH A ++++VE+L + D + + +GKT ++ ++ + ++
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGNEDL 128
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 161 DVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHA 220
D V IL D + ++ G TPL++AA+ +V LL++ V+ G+T LH
Sbjct: 28 DEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHL 86
Query: 221 AA 222
AA
Sbjct: 87 AA 88
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 59/143 (41%), Gaps = 29/143 (20%)
Query: 91 QVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNK--EKN 148
Q A +T LH+AA + + + L+E A E MT++ E
Sbjct: 32 QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE---------------PMTSELYEGQ 76
Query: 149 TALHEAVCHQNVDVVEILTKEDPDY------------PYSANNYGKTPLYMAAESRSSNM 196
TALH AV +QNV++V L P++ YG+ PL AA S +
Sbjct: 77 TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEI 136
Query: 197 VLALLENRTSVSHEGPNGKTALH 219
V L+E+ + + G T LH
Sbjct: 137 VRLLIEHGADIRAQDSLGNTVLH 159
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 95 KDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEA 154
+ +TPLH+A + G V L + T H + I++ TN +T LH A
Sbjct: 74 RGNTPLHLACEQGCLASVGVLTQSCT-TPHLHS-----------ILKATNYNGHTCLHLA 121
Query: 155 VCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
H + +VE+L D G+T L++A + ++ ++V LL+ V+
Sbjct: 122 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 175
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 16/145 (11%)
Query: 92 VNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEE-----LESRVGAAWQIIRM---- 142
+ A +PLH A GH V+ L++ + + V +W + +
Sbjct: 32 ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH 91
Query: 143 ---TNKEKNTA--LHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMV 197
E + A +HEA +V+ V L + + ++ G TPLY+A E++ V
Sbjct: 92 GASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACV 150
Query: 198 LALLENRTSVSHEGPNGKTALHAAA 222
LLE+ V+ +G + LHA A
Sbjct: 151 KKLLESGADVN-QGKGQDSPLHAVA 174
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 61/148 (41%), Gaps = 20/148 (13%)
Query: 78 VAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRV-GAA 136
V E+L P LLLQ + PLH + F +I FL L++ EN L+ +
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFL-----LSKMENVNLDDYPDDSG 72
Query: 137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKE--DPDYPYSANNYGKTPLYMAAESRSS 194
W T H A N++VV+ L PD N G T L++A +
Sbjct: 73 W-----------TPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWF 120
Query: 195 NMVLALLENRTSVSHEGPNGKTALHAAA 222
+ L+EN SV + + LH AA
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHRAA 148
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 61/148 (41%), Gaps = 20/148 (13%)
Query: 78 VAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRV-GAA 136
V E+L P LLLQ + PLH + F +I FL L++ EN L+ +
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFL-----LSKMENVNLDDYPDDSG 72
Query: 137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKE--DPDYPYSANNYGKTPLYMAAESRSS 194
W T H A N++VV+ L PD N G T L++A +
Sbjct: 73 W-----------TPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWF 120
Query: 195 NMVLALLENRTSVSHEGPNGKTALHAAA 222
+ L+EN SV + + LH AA
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHRAA 148
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 61/148 (41%), Gaps = 20/148 (13%)
Query: 78 VAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRV-GAA 136
V E+L P LLLQ + PLH + F +I FL L++ EN L+ +
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFL-----LSKMENVNLDDYPDDSG 72
Query: 137 WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKE--DPDYPYSANNYGKTPLYMAAESRSS 194
W T H A N++VV+ L PD N G T L++A +
Sbjct: 73 W-----------TPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWF 120
Query: 195 NMVLALLENRTSVSHEGPNGKTALHAAA 222
+ L+EN SV + + LH AA
Sbjct: 121 EVSQFLIENGASVRIKDKFNQIPLHRAA 148
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
T LH A ++++VE+L K D + + +G+TPL++AA +V LLE V+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVN-ARDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 209 HEGPNGKTAL 218
+ GKTA
Sbjct: 108 AQDKFGKTAF 117
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 22/108 (20%)
Query: 92 VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
VNA DD TPLH+AAK GH +IV L++ ++ +R W
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA-------DVNAR--DIW---------GR 81
Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
T LH A ++++VE+L + D + + +GKT ++ ++ + ++
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGNEDL 128
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 161 DVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHA 220
D V IL D + ++ G TPL++AA+ +V LL++ V+ G+T LH
Sbjct: 28 DEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHL 86
Query: 221 AA 222
AA
Sbjct: 87 AA 88
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 22/120 (18%)
Query: 92 VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
+N DD +PLH A + G S +V L+ R GA I + N+ +
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMR---------------GAR---INVMNRGDD 68
Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
T LH A H + D+V+ L + D + N +G PL+ A + L+ N VS
Sbjct: 69 TPLHLAASHGHRDIVQKLLQYKADIN-AVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 127
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 19/94 (20%)
Query: 92 VNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTAL 151
+N DDTPLH+AA GH DIV+ KL Q++ + I N+ N L
Sbjct: 63 MNRGDDTPLHLAASHGHRDIVQ------KLLQYKAD------------INAVNEHGNVPL 104
Query: 152 HEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPL 185
H A V E L N YG+ P+
Sbjct: 105 HYACFWGQDQVAEDLVANGA-LVSICNKYGEMPV 137
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 67/136 (49%), Gaps = 18/136 (13%)
Query: 92 VNAKDDTPLHVAAKFGHSDIVRFLVERAK-LTQHENEELESRVGAAWQI----------- 139
++ + + +H+AA+FGH+ IV +L+ + + + + + + AA++
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT 164
Query: 140 ----IRMTNK-EKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSS 194
+ + +K KNTALH AV N V+ +L + + + N G++ L +A + ++
Sbjct: 165 FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD-AQNIKGESALDLAKQRKNV 223
Query: 195 NMVLALLENRTSVSHE 210
M+ L E R + ++
Sbjct: 224 WMINHLQEARQAKGYD 239
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%)
Query: 140 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLA 199
+R +KE T LH A + +D+V+ + + TPL+ A +MV+
Sbjct: 35 VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ 94
Query: 200 LLENRTSVSHEGPNGKTALHAAA 222
L++ S G + +H AA
Sbjct: 95 LMKYGADPSLIDGEGCSCIHLAA 117
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 22/120 (18%)
Query: 92 VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
+N DD +PLH A + G S +V L+ R I + N+ +
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR------------------INVMNRGDD 73
Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
T LH A H + D+V+ L + D + N +G PL+ A + L+ N VS
Sbjct: 74 TPLHLAASHGHRDIVQKLLQYKADIN-AVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 132
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 19/94 (20%)
Query: 92 VNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTAL 151
+N DDTPLH+AA GH DIV+ KL Q++ + I N+ N L
Sbjct: 68 MNRGDDTPLHLAASHGHRDIVQ------KLLQYKAD------------INAVNEHGNVPL 109
Query: 152 HEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPL 185
H A V E L N YG+ P+
Sbjct: 110 HYACFWGQDQVAEDLVANGA-LVSICNKYGEMPV 142
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 95 KDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEA 154
+ +TPLH+A + G V L + T H + I++ TN +T LH A
Sbjct: 77 RGNTPLHLACEQGCLASVGVLTQSCT-TPHLHS-----------ILKATNYNGHTCLHLA 124
Query: 155 VCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVS 208
H + +VE+L D G+T L++A + ++ ++V LL+ V+
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 109 SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
SD+ + L+E A+ Q + + GA + +K T LH A + ++++VE+L K
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD---VNAEDKVGLTPLHLAAMNDHLEIVEVLLK 68
Query: 169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTAL 218
D + + G+TPL++ A +V LL++ V+ + GKTA
Sbjct: 69 NGADVN-AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 161 DVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHA 220
D V IL D + + G TPL++AA + +V LL+N V+ G+T LH
Sbjct: 28 DEVRILMANGADVN-AEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHL 86
Query: 221 AAMRSY 226
AM +
Sbjct: 87 VAMYGH 92
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 78 VAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERA 119
+ E+L K + ++A +TPLH+ A +GH +IV L++
Sbjct: 62 IVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHG 103
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 69 ERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEE 128
E E + +++ + + L Q + +T LH+AA++ SD + L+E + +
Sbjct: 30 EEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA-----DAN 84
Query: 129 LESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMA 188
++ +G T LH AV V +IL + + + G TPL +A
Sbjct: 85 IQDNMG-------------RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 131
Query: 189 AESRSSNMVLALLENRTSVSHEGPNGKTALH 219
A M+ L+ + V+ GK+ALH
Sbjct: 132 ARLAVEGMLEDLINSHADVNAVDDLGKSALH 162
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 19/101 (18%)
Query: 96 DDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAV 155
D TPLH+AA GH++IV L++ GA + + K TALH A
Sbjct: 67 DRTPLHMAASEGHANIVEVLLKH---------------GAD---VNAKDMLKMTALHWAT 108
Query: 156 CHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNM 196
H + +VVE+L K D ++ + + KT ++ ++ + ++
Sbjct: 109 EHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDL 148
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 19/121 (15%)
Query: 98 TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
+PLH+AA++GH L+ RA +++ ++R K T LH A
Sbjct: 36 SPLHLAAQYGHFSTTEVLL-RAGVSR------DAR-----------TKVDRTPLHMAASE 77
Query: 158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTA 217
+ ++VE+L K D + + T L+ A E +V L++ V + KTA
Sbjct: 78 GHANIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTA 136
Query: 218 L 218
Sbjct: 137 F 137
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 110 DIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKE 169
D+ + L+E A+ Q + + GA + T+ + LH A + + E+L +
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT----TDWLGTSPLHLAAQYGHFSTTEVLLRA 56
Query: 170 DPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAA 221
+ +TPL+MAA +N+V LL++ V+ + TALH A
Sbjct: 57 GVSRD-ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWA 107
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 16/143 (11%)
Query: 92 VNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESR-----VGAAWQIIRM---- 142
+ A +PLH A GH V+ L++ + + V +W + +
Sbjct: 88 ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH 147
Query: 143 ---TNKEKNTA--LHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMV 197
E + A +HEA +V+ V L + + ++ G TPLY+A E++ V
Sbjct: 148 GASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACV 206
Query: 198 LALLENRTSVSHEGPNGKTALHA 220
LLE+ V+ +G + LHA
Sbjct: 207 KKLLESGADVN-QGKGQDSPLHA 228
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 69 ERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEE 128
E E + +++ + + L Q + +T LH+AA++ SD + L+E + +
Sbjct: 31 EEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA-----DAN 85
Query: 129 LESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMA 188
++ +G T LH AV V +IL + + + G TPL +A
Sbjct: 86 IQDNMG-------------RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 132
Query: 189 AESRSSNMVLALLENRTSVSHEGPNGKTALH 219
A M+ L+ + V+ GK+ALH
Sbjct: 133 ARLAVEGMLEDLINSHADVNAVDDLGKSALH 163
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 12/72 (16%)
Query: 51 LLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAK---DDTPLHVAAKFG 107
+ +K NT LH N + AE ++K VNA+ +TPLH+AAK G
Sbjct: 3 MWGSKDGNTPLH---------NAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG 53
Query: 108 HSDIVRFLVERA 119
H++IV+ L+ +
Sbjct: 54 HAEIVKLLLAKG 65
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 28 FFNAAAAGNSEPFKDMAGEEIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPL 87
NAA G++E K + + +K NT LH+ +N + V +L K
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHL-----AAKNGHAEIVKLLLAKGA- 66
Query: 88 LLLQVNAK---DDTPLHVAAKFGHSDIVRFL 115
VNA+ +TP H+A K GH +IV+ L
Sbjct: 67 ---DVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 145 KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENR 204
K+ NT LH A + + + V+ L + D + + G TPL++AA++ + +V LL
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 205 TSVSHEGPNGKTALHAAAMRSY 226
V+ +G T H A +
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGH 87
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 181 GKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSYA 227
G TPL+ AA++ + V LL V+ +G T LH AA +A
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHA 55
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 18/142 (12%)
Query: 78 VAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAW 137
+++ + + L Q + +T LH+AA++ SD + L+E + + ++ +G
Sbjct: 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA-----DANIQDNMG--- 58
Query: 138 QIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMV 197
T LH AV V +IL + + + G TPL +AA M+
Sbjct: 59 ----------RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML 108
Query: 198 LALLENRTSVSHEGPNGKTALH 219
L+ + V+ GK+ALH
Sbjct: 109 EDLINSHADVNAVDDLGKSALH 130
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 18/129 (13%)
Query: 91 QVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTA 150
Q + +T LH+AA++ SD + L+E + + ++ +G T
Sbjct: 17 QTDRTGETALHLAARYSRSDAAKRLLEASA-----DAXIQDNMG-------------RTP 58
Query: 151 LHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHE 210
LH AV V +IL + + + G TPL +AA M+ L+ + V+
Sbjct: 59 LHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAV 118
Query: 211 GPNGKTALH 219
GK+ALH
Sbjct: 119 DDLGKSALH 127
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 144 NKEKNTA---LHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLAL 200
N + NT LH AV + V +IL + + + G TPL +AA MV L
Sbjct: 78 NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDL 137
Query: 201 LENRTSVSHEGPNGKTALHAAA 222
+ ++ +GKTALH AA
Sbjct: 138 ITADADINAADNSGKTALHWAA 159
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 140 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLA 199
I + TALH A N + V IL + + ++ +TPL++AA S A
Sbjct: 144 INAADNSGKTALHWAAAVNNTEAVNILLMHHANRD-AQDDKDETPLFLAAREGSYEASKA 202
Query: 200 LLEN 203
LL+N
Sbjct: 203 LLDN 206
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 109 SDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
SD+ + L+E A+ Q + + GA + ++ T L+ A H ++++VE+L K
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD---VNAKDEYGLTPLYLATAHGHLEIVEVLLK 68
Query: 169 EDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTAL 218
D + + G TPL++AA + LL++ V+ + GKTA
Sbjct: 69 NGADVN-AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 161 DVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHA 220
D V IL D + + YG TPLY+A +V LL+N V+ G T LH
Sbjct: 28 DEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHL 86
Query: 221 AAMRSY 226
AA +
Sbjct: 87 AAFIGH 92
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 22/97 (22%)
Query: 92 VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
VNAKD+ TPL++A GH +IV L++ + V A I
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLLKNG-----------ADVNAVDAI-------GF 81
Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPL 185
T LH A ++++ E+L K D + + +GKT
Sbjct: 82 TPLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAF 117
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 18/91 (19%)
Query: 78 VAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAW 137
+ E+L K + V+A TPLH+AA GH +I L++
Sbjct: 62 IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG------------------ 103
Query: 138 QIIRMTNKEKNTALHEAVCHQNVDVVEILTK 168
+ +K TA ++ + N D+ EIL K
Sbjct: 104 ADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 78 VAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERA 119
V E+L + L+ ++D+PLH AAK GH DIV+ L+
Sbjct: 58 VVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 142 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALL 201
TN T LH A ++ VE L + D P ++ G TPL+ A +V LL
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLL 63
Query: 202 ENRTSVSHEGPNGKTALHAAAMRSY 226
+++ V+ G + LH AA +
Sbjct: 64 QHKALVNTTGYQNDSPLHDAAKNGH 88
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 33/115 (28%)
Query: 93 NAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNT 149
N KD TPLH A GH +V L++ L + T + ++
Sbjct: 37 NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL------------------VNTTGYQNDS 78
Query: 150 ALHEAVCHQNVDVVEILTKEDPDYPYSA-----NNYGKTPL-YMAAESRSSNMVL 198
LH+A + +VD+V++L Y A N +G P+ Y ES S ++L
Sbjct: 79 PLHDAAKNGHVDIVKLLLS------YGASRNAVNIFGLRPVDYTDDESMKSLLLL 127
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 23/130 (17%)
Query: 107 GHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEIL 166
G +D + L++ A+ T + L+ V A++ + + TALH A+ +N +V +L
Sbjct: 68 GQNDTIALLLDVARKT----DSLKQFVNASYT---DSYYKGQTALHIAIERRNXTLVTLL 120
Query: 167 TKEDPDYPYSANN-------------YGKTPLYMAAESRSSNMVLALLENR---TSVSHE 210
+ D +AN +G+ PL +AA + +V LL+N +S
Sbjct: 121 VENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISAR 180
Query: 211 GPNGKTALHA 220
G T LHA
Sbjct: 181 DSVGNTVLHA 190
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 22/118 (18%)
Query: 92 VNAKDDTPLHVAAKFGHSDIVRFLVERA------------------KLTQHENEELESRV 133
+ + TPLH AA + +V +L++ +E EL +
Sbjct: 42 IEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 101
Query: 134 GAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAES 191
GA ++ + + K T LHEA ++ ++L + D P N G TPL + +
Sbjct: 102 GA---VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKDG 155
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 22/118 (18%)
Query: 92 VNAKDDTPLHVAAKFGHSDIVRFLVERA------------------KLTQHENEELESRV 133
+ + TPLH AA + +V +L++ +E EL +
Sbjct: 40 IEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 99
Query: 134 GAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAES 191
GA ++ + + K T LHEA ++ ++L + D P N G TPL + +
Sbjct: 100 GA---VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKDG 153
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 33.9 bits (76), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 22/118 (18%)
Query: 92 VNAKDDTPLHVAAKFGHSDIVRFLVERA------------------KLTQHENEELESRV 133
+ + TPLH AA + +V +L++ +E EL +
Sbjct: 38 IEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 97
Query: 134 GAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAES 191
GA ++ + + K T LHEA ++ ++L + D P N G TPL + +
Sbjct: 98 GA---VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKDG 151
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 21/125 (16%)
Query: 98 TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
T L AA+ GH ++++ L++ E+ + V A N +N +H +
Sbjct: 150 TALMDAAEKGHVEVLKILLD----------EMGADVNAC------DNMGRNALIHALLSS 193
Query: 158 QNVDVVEILTKEDPDYPYSAN---NYGKTPLYMAAESRSSNMVLALLENR-TSVSHEGPN 213
+ DV E +T D+ N GKTPL +A E + +V LLE ++ +
Sbjct: 194 DDSDV-EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD 252
Query: 214 GKTAL 218
GKTAL
Sbjct: 253 GKTAL 257
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 146 EKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRT 205
E N L +AV +++VD+V+ L + + + G TPL+ A + ++V LL +
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 206 SVSHEGPNGKTALHAAAM 223
NG T AA+
Sbjct: 64 DPVLRKKNGATPFLLAAI 81
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 142 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALL 201
+ N E TALH AVC + ++V+ L + + +A++ G TPL+ AA + + L+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 202 ENRTSV 207
E+ +V
Sbjct: 124 ESGAAV 129
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 33.9 bits (76), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 142 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALL 201
+ N E TALH AVC + ++V+ L + + +A++ G TPL+ AA + + L+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 202 ENRTSV 207
E+ +V
Sbjct: 124 ESGAAV 129
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 33.9 bits (76), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 18/151 (11%)
Query: 69 ERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEE 128
E E + +++ + + L Q + T LH+AA + SD + L+E + +
Sbjct: 30 EEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASA-----DAN 84
Query: 129 LESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMA 188
++ +G T LH AV V +IL + + + G TPL +A
Sbjct: 85 IQDNMG-------------RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 131
Query: 189 AESRSSNMVLALLENRTSVSHEGPNGKTALH 219
A M+ L+ + V+ GK+ALH
Sbjct: 132 ARLAVEGMLEDLINSHADVNAVDDLGKSALH 162
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 18/105 (17%)
Query: 97 DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVC 156
D PLH AAK G+ +R E L++RVG + +K +TAL+ A
Sbjct: 74 DNPLHEAAKRGNLSWLR-------------ECLDNRVG-----VNGLDKAGSTALYWACH 115
Query: 157 HQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALL 201
+ D+VE L + N G T L+ AA +++V LL
Sbjct: 116 GGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 89 LLQVNAKDDTPLHVAAKFGHSDIVRFLVERAKLTQHENEE 128
L Q N DT LH AA G++DIV+ L+ + T N E
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIE 172
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 181 GKTPLYMAAESRSSNMVLALL-ENRTSVSHEGPNGKTALHAAAMRSYA 227
G T LY A ++V L + ++ + G TALHAAA + YA
Sbjct: 106 GSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYA 153
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 21/104 (20%)
Query: 100 LHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQN 159
+HVAA+ G +D VR L+E + +++R G TALH A
Sbjct: 24 IHVAARKGQTDEVRRLIETGV-----SPTIQNRFGC-------------TALHLACKFGC 65
Query: 160 VDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLEN 203
VD + L + +G+ P+++A + +++V+AL+E
Sbjct: 66 VDTAKYLASVGEVHSLW---HGQKPIHLAVXANKTDLVVALVEG 106
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 21/125 (16%)
Query: 98 TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
T L AA+ GH ++++ L++ E+ + V A N +N +H +
Sbjct: 170 TALMDAAEKGHVEVLKILLD----------EMGADVNAC------DNMGRNALIHALLSS 213
Query: 158 QNVDVVEILTKEDPDYPYSAN---NYGKTPLYMAAESRSSNMVLALLEN-RTSVSHEGPN 213
+ DV E +T D+ N GKTPL +A E + +V LLE ++ +
Sbjct: 214 DDSDV-EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD 272
Query: 214 GKTAL 218
GKTAL
Sbjct: 273 GKTAL 277
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 146 EKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRT 205
E N L +AV +++VD+V+ L + + + G TPL+ A + ++V LL +
Sbjct: 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 83
Query: 206 SVSHEGPNGKTALHAAAM 223
NG T AA+
Sbjct: 84 DPVLRKKNGATPFILAAI 101
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 34/120 (28%)
Query: 93 NAKDDTPLHVAAKFGHSDIVRFLVERA------------------KLTQHENEELESRVG 134
+ + TPLH+AA + IV+ L++ +E EL + G
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG 114
Query: 135 AA------WQIIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMA 188
A WQ T LHEA V+V +L D P N +GK+ + MA
Sbjct: 115 ACVNAMDLWQF---------TPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMA 164
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 136 AWQIIRMTNKEKN-TALHEAVCH---QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAES 191
A +II + + TALH AV + V E+L ++ + ++ TPL++AAE
Sbjct: 199 ALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDF-MTPLHVAAER 257
Query: 192 RSSNMVLALLENRTSVSHEGPNGKTALHAAAMRSY 226
++++ L ++ ++ G+TALH AA+ +
Sbjct: 258 AHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGH 292
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 47 EIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQVNAKDDTPLHVAAKF 106
EI + ++ T LH + S + K VAE+L + + + N TPLHVAA+
Sbjct: 201 EIINFKQPQSHETALHCAVASLHPKR---KQVAELLLRKGANVNEKNKDFMTPLHVAAER 257
Query: 107 GHSDIVRFL 115
H+D++ L
Sbjct: 258 AHNDVMEVL 266
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 21/80 (26%)
Query: 92 VNAKDD---TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
VNAKD TPLH+AA+ GH +IV L++ A + +K
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLK------------------AGADVNAQDKFGK 69
Query: 149 TALHEAVCHQNVDVVEILTK 168
TA ++ + N D+ EIL K
Sbjct: 70 TAFDISIDNGNEDLAEILQK 89
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 20/77 (25%)
Query: 48 IKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLLLQ----VNAKD---DTPL 100
I + AK+ T LH+ + K E+L+ LL+Q VN KD TPL
Sbjct: 190 INDVRHAKSGGTALHV---------AAAKGYTEVLK----LLIQARYDVNIKDYDGWTPL 236
Query: 101 HVAAKFGHSDIVRFLVE 117
H AA +G + R LVE
Sbjct: 237 HAAAHWGKEEACRILVE 253
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 57/150 (38%), Gaps = 44/150 (29%)
Query: 99 PLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTAL------- 151
PLH AA G+ DI +L+ + + VGA N E +T L
Sbjct: 109 PLHAAASCGYLDIAEYLISQG-----------AHVGA-------VNSEGDTPLDIAEEEA 150
Query: 152 -----HEAVCHQNVDVVEILTKEDPDYPYSANNY--------------GKTPLYMAAESR 192
V Q VD+ +E+ A + G T L++AA
Sbjct: 151 MEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKG 210
Query: 193 SSNMVLALLENRTSVSHEGPNGKTALHAAA 222
+ ++ L++ R V+ + +G T LHAAA
Sbjct: 211 YTEVLKLLIQARYDVNIKDYDGWTPLHAAA 240
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 92 VNAKDDTPLHVAAKFGHSDIVRFLVERAKL----TQHENEELESRVGAAWQIIRMTN--- 144
VN++ DTPL +A + ++++ V R + + E E + R W N
Sbjct: 135 VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR 194
Query: 145 --KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNY-GKTPLYMAAESRSSNMVLALL 201
K TALH A +V+++L + Y + +Y G TPL+ AA L+
Sbjct: 195 HAKSGGTALHVAAAKGYTEVLKLLIQ--ARYDVNIKDYDGWTPLHAAAHWGKEEACRILV 252
Query: 202 ENRTSVSHEGPNGKTALHAA 221
EN + G+TA A
Sbjct: 253 ENLCDMEAVNKVGQTAFDVA 272
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 166 LTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTALHAAAMRS 225
L + D Y AN G T L+ A + +MV L+EN +++ G LHAAA
Sbjct: 59 LLERGADINY-ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG 117
Query: 226 Y 226
Y
Sbjct: 118 Y 118
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 21/78 (26%)
Query: 92 VNAKD---DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
V AKD TPLH+AA+ GH ++V+ L+E A + +K
Sbjct: 50 VAAKDKNGSTPLHLAARNGHLEVVKLLLE------------------AGADVXAQDKFGK 91
Query: 149 TALHEAVCHQNVDVVEIL 166
TA ++ + N D+ EIL
Sbjct: 92 TAFDISIDNGNEDLAEIL 109
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 151 LHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHE 210
L EA D V IL D N G TPL++AA + +V LLE V +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 211 GPNGKTAL 218
GKTA
Sbjct: 87 DKFGKTAF 94
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 21/78 (26%)
Query: 92 VNAKD---DTPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKN 148
V AKD TPLH+AA+ GH ++V+ L+E A + +K
Sbjct: 32 VAAKDKNGSTPLHLAARNGHLEVVKLLLE------------------AGADVNAQDKFGK 73
Query: 149 TALHEAVCHQNVDVVEIL 166
TA ++ + N D+ EIL
Sbjct: 74 TAFDISIDNGNEDLAEIL 91
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 151 LHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHE 210
L EA D V IL D N G TPL++AA + +V LLE V+ +
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 211 GPNGKTAL 218
GKTA
Sbjct: 69 DKFGKTAF 76
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 14/76 (18%)
Query: 36 NSEPF----KDMAGEE----IKSLLTAKTENTILHINIISQER-ENVSTKFVAEILEKCP 86
EP+ +D AG+E ++ L +T+ ++ +++S ENV K+V EI CP
Sbjct: 47 GGEPYTLGLRDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 87 -----LLLLQVNAKDD 97
L+ Q++ +DD
Sbjct: 107 KTPFLLVGTQIDLRDD 122
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 50/132 (37%), Gaps = 25/132 (18%)
Query: 98 TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
TPL AA G +V FL++ GA Q++ K + +AL A
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQN---------------GADPQLL---GKGRESALSLACSK 79
Query: 158 QNVDVVEILTKEDPDYPYSANNY---GKTPLYMAAESRSSNMVLALLENRTSVSHEGPNG 214
D+V++L D N Y G TPL A V LLE+ + E +G
Sbjct: 80 GYTDIVKMLL----DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 135
Query: 215 KTALHAAAMRSY 226
++ A Y
Sbjct: 136 YNSMDLAVALGY 147
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 53 TAKTENTILH--INIISQERENVS--TKFVAEILEK----CPLLLLQ--VNAKDDTPLHV 102
T NT+LH + I EN++ T +L+ CP + L+ N +D TPL +
Sbjct: 173 TDSQGNTVLHALVXISDNSAENIALVTSXYDGLLQAGARLCPTVQLEDIRNLQDLTPLKL 232
Query: 103 AAKFGHSDIVRFLVER 118
AAK G +I R +++R
Sbjct: 233 AAKEGKIEIFRHILQR 248
>pdb|4GLT|A Chain A, Crystal Structure Of Glutathione S-Transferase Mfla_2116
(Target Efi- 507160) From Methylobacillus Flagellatus Kt
With Gsh Bound
pdb|4GLT|B Chain B, Crystal Structure Of Glutathione S-Transferase Mfla_2116
(Target Efi- 507160) From Methylobacillus Flagellatus Kt
With Gsh Bound
pdb|4GLT|C Chain C, Crystal Structure Of Glutathione S-Transferase Mfla_2116
(Target Efi- 507160) From Methylobacillus Flagellatus Kt
With Gsh Bound
pdb|4GLT|D Chain D, Crystal Structure Of Glutathione S-Transferase Mfla_2116
(Target Efi- 507160) From Methylobacillus Flagellatus Kt
With Gsh Bound
Length = 225
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 159 NVDVVEILTKEDPDYPYSANN-YGKTPLYMAAESRS---SNMVLALLENRTSVSHEGPNG 214
+VD+V ++ DP+ P + +N GK P+ + + S S +++ L++RT V+H P
Sbjct: 47 DVDMV-LVVLADPECPVADHNPLGKIPVLILPDGESLYDSRVIVEYLDHRTPVAHLIPQD 105
Query: 215 KTA 217
TA
Sbjct: 106 HTA 108
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 30.0 bits (66), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 50/132 (37%), Gaps = 25/132 (18%)
Query: 98 TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
TPL AA G +V FL++ GA Q++ K + +AL A
Sbjct: 54 TPLMWAAAHGQIAVVEFLLQN---------------GADPQLL---GKGRESALSLACSK 95
Query: 158 QNVDVVEILTKEDPDYPYSANNY---GKTPLYMAAESRSSNMVLALLENRTSVSHEGPNG 214
D+V++L D N Y G TPL A V LLE+ + E +G
Sbjct: 96 GYTDIVKMLL----DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 151
Query: 215 KTALHAAAMRSY 226
++ A Y
Sbjct: 152 YNSMDLAVALGY 163
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 50/132 (37%), Gaps = 25/132 (18%)
Query: 98 TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
TPL AA G +V FL++ GA Q++ K + +AL A
Sbjct: 36 TPLMWAAAHGQIAVVEFLLQN---------------GADPQLL---GKGRESALSLACSK 77
Query: 158 QNVDVVEILTKEDPDYPYSANNY---GKTPLYMAAESRSSNMVLALLENRTSVSHEGPNG 214
D+V++L D N Y G TPL A V LLE+ + E +G
Sbjct: 78 GYTDIVKMLL----DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG 133
Query: 215 KTALHAAAMRSY 226
++ A Y
Sbjct: 134 YNSMDLAVALGY 145
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 93 NAKDDTPLHVAAKFGHSDIVRFLVE 117
N + +TPL VA+K+G S+IV+ L+E
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLE 155
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 19/125 (15%)
Query: 98 TPLHVAAKFGHSDIVRFLVERAKLTQHENEELESRVGAAWQIIRMTNKEKNTALHEAVCH 157
TPL VA G + + LVE + E++++E W + K + E +
Sbjct: 37 TPLMVACMLGMENAIDKLVE--NFDKLEDKDIEGSTALIWAV-----KNNRLGIAEKLLS 89
Query: 158 QNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSVSHEGPNGKTA 217
+ +V D+ GKTPL + S M LLE+ +V+ G+T
Sbjct: 90 KGSNV------NTKDFS------GKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETP 137
Query: 218 LHAAA 222
L A+
Sbjct: 138 LIVAS 142
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 36 NSEPFK----DMAGEE----IKSLLTAKTENTILHINIISQER-ENVSTKFVAEILEKCP 86
EP+ D AG+E ++ L +T+ ++ +++S ENV K+V EI CP
Sbjct: 54 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 113
Query: 87 -----LLLLQVNAKDD 97
L+ Q++ +DD
Sbjct: 114 KTPFLLVGTQIDLRDD 129
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 36 NSEPFK----DMAGEE----IKSLLTAKTENTILHINIISQER-ENVSTKFVAEILEKCP 86
EP+ D AG+E ++ L +T+ ++ +++S ENV K+V EI CP
Sbjct: 50 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 109
Query: 87 -----LLLLQVNAKDD 97
L+ Q++ +DD
Sbjct: 110 KTPFLLVGTQIDLRDD 125
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 36 NSEPFK----DMAGEE----IKSLLTAKTENTILHINIISQER-ENVSTKFVAEILEKCP 86
EP+ D AG+E ++ L +T+ ++ +++S ENV K+V EI CP
Sbjct: 57 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 116
Query: 87 -----LLLLQVNAKDD 97
L+ Q++ +DD
Sbjct: 117 KTPFLLVGTQIDLRDD 132
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 36 NSEPFK----DMAGEE----IKSLLTAKTENTILHINIISQER-ENVSTKFVAEILEKCP 86
EP+ D AG+E ++ L +T+ ++ +++S ENV K+V EI CP
Sbjct: 49 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 108
Query: 87 -----LLLLQVNAKDD 97
L+ Q++ +DD
Sbjct: 109 KTPFLLVGTQIDLRDD 124
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 36 NSEPFK----DMAGEE----IKSLLTAKTENTILHINIISQER-ENVSTKFVAEILEKCP 86
EP+ D AG+E ++ L +T+ ++ +++S ENV K+V EI CP
Sbjct: 47 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 87 -----LLLLQVNAKDD 97
L+ Q++ +DD
Sbjct: 107 KTPFLLVGTQIDLRDD 122
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 36 NSEPFK----DMAGEE----IKSLLTAKTENTILHINIISQER-ENVSTKFVAEILEKCP 86
EP+ D AG+E ++ L +T+ ++ +++S ENV K+V EI CP
Sbjct: 50 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 109
Query: 87 -----LLLLQVNAKDD 97
L+ Q++ +DD
Sbjct: 110 KTPFLLVGTQIDLRDD 125
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 36 NSEPFK----DMAGEE----IKSLLTAKTENTILHINIISQER-ENVSTKFVAEILEKCP 86
EP+ D AG+E ++ L +T+ ++ +++S ENV K+V EI CP
Sbjct: 54 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 113
Query: 87 -----LLLLQVNAKDD 97
L+ Q++ +DD
Sbjct: 114 KTPFLLVGTQIDLRDD 129
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 36 NSEPFK----DMAGEE----IKSLLTAKTENTILHINIISQER-ENVSTKFVAEILEKCP 86
EP+ D AG+E ++ L +T+ ++ +++S ENV K+V EI CP
Sbjct: 47 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 87 -----LLLLQVNAKDD 97
L+ Q++ +DD
Sbjct: 107 KTPFLLVGTQIDLRDD 122
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 36 NSEPFK----DMAGEE----IKSLLTAKTENTILHINIISQER-ENVSTKFVAEILEKCP 86
EP+ D AG+E ++ L +T+ ++ +++S ENV K+V EI CP
Sbjct: 51 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 110
Query: 87 -----LLLLQVNAKDD 97
L+ Q++ +DD
Sbjct: 111 KTPFLLVGTQIDLRDD 126
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 36 NSEPFK----DMAGEE----IKSLLTAKTENTILHINIISQER-ENVSTKFVAEILEKCP 86
EP+ D AG+E ++ L +T+ ++ +++S ENV K+V EI CP
Sbjct: 47 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 87 -----LLLLQVNAKDD 97
L+ Q++ +DD
Sbjct: 107 KTPFLLVGTQIDLRDD 122
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 36 NSEPFK----DMAGEE----IKSLLTAKTENTILHINIISQER-ENVSTKFVAEILEKCP 86
EP+ D AG+E ++ L +T+ ++ +++S ENV K+V EI CP
Sbjct: 47 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 87 -----LLLLQVNAKDD 97
L+ Q++ +DD
Sbjct: 107 KTPFLLVGTQIDLRDD 122
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 36 NSEPFK----DMAGEE----IKSLLTAKTENTILHINIISQER-ENVSTKFVAEILEKCP 86
EP+ D AG+E ++ L +T+ ++ +++S ENV K+V EI CP
Sbjct: 47 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 87 -----LLLLQVNAKDD 97
L+ Q++ +DD
Sbjct: 107 KTPFLLVGTQIDLRDD 122
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 36 NSEPFK----DMAGEE----IKSLLTAKTENTILHINIISQER-ENVSTKFVAEILEKCP 86
EP+ D AG+E ++ L +T+ ++ +++S ENV K+V EI CP
Sbjct: 48 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 107
Query: 87 -----LLLLQVNAKDD 97
L+ Q++ +DD
Sbjct: 108 KTPFLLVGTQIDLRDD 123
>pdb|1O4X|B Chain B, Ternary Complex Of The Dna Binding Domains Of The Oct1 And
Sox2 Transcription Factors With A 19mer Oligonucleotide
From The Hoxb1 Regulatory Element
Length = 88
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 15/78 (19%)
Query: 114 FLV----ERAKLTQH----ENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEI 165
F+V +R K+ Q N E+ R+GA W+++ T EK + EA + +
Sbjct: 15 FMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSET--EKRPFIDEA-----KRLRAL 67
Query: 166 LTKEDPDYPYSANNYGKT 183
KE PDY Y KT
Sbjct: 68 HMKEHPDYKYRPRRKTKT 85
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 36 NSEPFK----DMAGEE----IKSLLTAKTENTILHINIISQER-ENVSTKFVAEILEKCP 86
EP+ D AG+E ++ L +T+ ++ +++S ENV K+V EI CP
Sbjct: 49 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 108
Query: 87 -----LLLLQVNAKDD 97
L+ Q++ +DD
Sbjct: 109 KTPFLLVGTQIDLRDD 124
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 36 NSEPFK----DMAGEE----IKSLLTAKTENTILHINIISQER-ENVSTKFVAEILEKCP 86
EP+ D AG+E ++ L +T+ ++ +++S ENV K+V EI CP
Sbjct: 47 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 87 -----LLLLQVNAKDD 97
L+ Q++ +DD
Sbjct: 107 KTPFLLVGTQIDLRDD 122
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 36 NSEPFK----DMAGEE----IKSLLTAKTENTILHINIISQER-ENVSTKFVAEILEKCP 86
EP+ D AG+E ++ L +T+ ++ +++S ENV K+V EI CP
Sbjct: 47 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 87 -----LLLLQVNAKDD 97
L+ Q++ +DD
Sbjct: 107 KTPFLLVGTQIDLRDD 122
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 36 NSEPFK----DMAGEE----IKSLLTAKTENTILHINIISQER-ENVSTKFVAEILEKCP 86
EP+ D AG+E ++ L +T+ ++ +++S ENV K+V EI CP
Sbjct: 47 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 87 -----LLLLQVNAKDD 97
L+ Q++ +DD
Sbjct: 107 KTPFLLVGTQIDLRDD 122
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 36 NSEPFK----DMAGEE----IKSLLTAKTENTILHINIISQER-ENVSTKFVAEILEKCP 86
EP+ D AG+E ++ L +T+ ++ +++S ENV K+V EI CP
Sbjct: 47 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 87 -----LLLLQVNAKDD 97
L+ Q++ +DD
Sbjct: 107 KTPFLLVGTQIDLRDD 122
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 36 NSEPFK----DMAGEE----IKSLLTAKTENTILHINIISQER-ENVSTKFVAEILEKCP 86
EP+ D AG+E ++ L +T+ ++ +++S ENV K+V EI CP
Sbjct: 47 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 87 -----LLLLQVNAKDD 97
L+ Q++ +DD
Sbjct: 107 KTPFLLVGTQIDLRDD 122
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 92 VNAKDDT---PLHVAAKFGHSDIVRFLVERAKLTQHENEEL 129
VNA D T P+H+A + GHS +V FL + L + L
Sbjct: 102 VNALDSTGSLPIHLAIREGHSSVVSFLAPESDLHHRDASGL 142
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 36 NSEPFK----DMAGEE----IKSLLTAKTENTILHINIISQER-ENVSTKFVAEILEKCP 86
EP+ D AG+E ++ L +T+ ++ +++S ENV K+V EI CP
Sbjct: 47 GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP 106
Query: 87 -----LLLLQVNAKDD 97
L+ Q++ +DD
Sbjct: 107 KTPFLLVGTQIDLRDD 122
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 92 VNAKDDT---PLHVAAKFGHSDIVRFLVERAKLTQHENEEL 129
VNA D T P+H+A + GHS +V FL + L + L
Sbjct: 100 VNALDSTGSLPIHLAIREGHSSVVSFLAPESDLHHRDASGL 140
>pdb|2LE4|A Chain A, Solution Structure Of The Hmg Box Dna-Binding Domain Of
Human Stem Cell Transcription Factor Sox2
Length = 81
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 15/78 (19%)
Query: 114 FLV----ERAKLTQH----ENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEI 165
F+V +R K+ Q N E+ R+GA W+++ T EK + EA + +
Sbjct: 11 FMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSET--EKRPFIDEA-----KRLRAL 63
Query: 166 LTKEDPDYPYSANNYGKT 183
KE PDY Y KT
Sbjct: 64 HMKEHPDYKYRPRRKTKT 81
>pdb|1GT0|D Chain D, Crystal Structure Of A PouHMGDNA TERNARY COMPLEX
Length = 80
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 15/78 (19%)
Query: 114 FLV----ERAKLTQH----ENEELESRVGAAWQIIRMTNKEKNTALHEAVCHQNVDVVEI 165
F+V +R K+ Q N E+ R+GA W+++ T EK + EA + +
Sbjct: 10 FMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSET--EKRPFIDEA-----KRLRAL 62
Query: 166 LTKEDPDYPYSANNYGKT 183
KE PDY Y KT
Sbjct: 63 HMKEHPDYKYRPRRKTKT 80
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 92 VNAKDD---TPLHVAAKFGHSDIVRFLVER-AKLTQHENEELESRVGAAWQIIRMTNKEK 147
VN +D+ PLH+AAK GH +V FLV+ A H N + ++ A + R+ + +
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT----ACDLARLYGRNE 151
Query: 148 NTALHEA 154
+L +A
Sbjct: 152 VVSLMQA 158
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 92 VNAKDD---TPLHVAAKFGHSDIVRFLVER-AKLTQHENEELESRVGAAWQIIRMTNKEK 147
VN +D+ PLH+AAK GH +V FLV+ A H N + ++ A + R+ + +
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT----ACDLARLYGRNE 151
Query: 148 NTALHEA 154
+L +A
Sbjct: 152 VVSLMQA 158
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 92 VNAKDD---TPLHVAAKFGHSDIVRFLVER-AKLTQHENEELESRVGAAWQIIRMTNKEK 147
VN +D+ PLH+AAK GH +V FLV+ A H N + ++ A + R+ + +
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT----ACDLARLYGRNE 151
Query: 148 NTALHEA 154
+L +A
Sbjct: 152 VVSLMQA 158
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 92 VNAKDD---TPLHVAAKFGHSDIVRFLVER-AKLTQHENEELESRVGAAWQIIRMTNKEK 147
VN +D+ PLH+AAK GH +V FLV+ A H N + ++ A + R+ + +
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT----ACDLARLYGRNE 151
Query: 148 NTALHEA 154
+L +A
Sbjct: 152 VVSLMQA 158
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 92 VNAKDD---TPLHVAAKFGHSDIVRFLVER-AKLTQHENEELESRVGAAWQIIRMTNKEK 147
VN +D+ PLH+AAK GH +V FLV+ A H N + ++ A + R+ + +
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT----ACDLARLYGRNE 151
Query: 148 NTALHEA 154
+L +A
Sbjct: 152 VVSLMQA 158
>pdb|3CMG|A Chain A, Crystal Structure Of Putative Beta-Galactosidase From
Bacteroides Fragilis
Length = 667
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 7/43 (16%)
Query: 47 EIKSLLTAKTENTILHINIISQERENVSTKFVAEILEKCPLLL 89
E++ L+T T+ +I +E NVS K A+ILE+ PLL+
Sbjct: 193 ELQVLVTDGTK-------VICKESRNVSLKQGADILEQLPLLI 228
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 149 TALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAESRSSNMVLALLENRTSV 207
TALH A N +V+ L E + GKTP+ +AA+ +V L++ SV
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASV 339
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 139 IIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAA 189
++ + + NTALH +V H N VV+ L N G +P+ + A
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA 153
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 138 QIIRMTN------KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNYGKTPLYMAAES 191
Q+ R+ N + TAL AV H VDVV+ L + D ++ G T L A E
Sbjct: 168 QLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDD-GSTALMCACEH 226
Query: 192 RSSNMV-LALLENRTSVSHEGPNGKTALHAA 221
+ L L +S +G TAL A
Sbjct: 227 GHKEIAGLLLAVPSCDISLTDRDGSTALMVA 257
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 14/73 (19%)
Query: 58 NTILH--INIISQERENVSTKFVAE----ILEKCPLLL----LQVNAKDD--TPLHVAAK 105
NT+LH + I REN TKFV + +L KC L L+ +D +PL +AAK
Sbjct: 175 NTVLHALVAIADNTREN--TKFVTKMYDLLLLKCARLFPDSNLEAVLNNDGLSPLMMAAK 232
Query: 106 FGHSDIVRFLVER 118
G I + ++ R
Sbjct: 233 TGKIGIFQHIIRR 245
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 14/73 (19%)
Query: 58 NTILH--INIISQERENVSTKFVAE----ILEKCPLLLLQVNAK----DD--TPLHVAAK 105
NT+LH + I REN TKFV + +L KC L N + +D +PL +AAK
Sbjct: 177 NTVLHALVAIADNTREN--TKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAK 234
Query: 106 FGHSDIVRFLVER 118
G I + ++ R
Sbjct: 235 TGKIGIFQHIIRR 247
>pdb|1H2T|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|A Chain A, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|B Chain B, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
Length = 723
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 64 NIISQERENVSTKFVAEILEKC 85
+ +SQ+ E+ KFV E+LEKC
Sbjct: 416 DCLSQDPESPKPKFVREVLEKC 437
>pdb|1N52|A Chain A, Cap Binding Complex
pdb|1N54|A Chain A, Cap Binding Complex M7gpppg Free
pdb|3FEX|A Chain A, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|A Chain A, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 790
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 64 NIISQERENVSTKFVAEILEKC 85
+ +SQ+ E+ KFV E+LEKC
Sbjct: 435 DCLSQDPESPKPKFVREVLEKC 456
>pdb|1H6K|A Chain A, Nuclear Cap Binding Complex
pdb|1H6K|B Chain B, Nuclear Cap Binding Complex
pdb|1H6K|C Chain C, Nuclear Cap Binding Complex
Length = 757
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 64 NIISQERENVSTKFVAEILEKC 85
+ +SQ+ E+ KFV E+LEKC
Sbjct: 416 DCLSQDPESPKPKFVREVLEKC 437
>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
Length = 771
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 64 NIISQERENVSTKFVAEILEKC 85
+ +SQ+ E+ KFV E+LEKC
Sbjct: 416 DCLSQDPESPKPKFVREVLEKC 437
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,114,940
Number of Sequences: 62578
Number of extensions: 223975
Number of successful extensions: 1026
Number of sequences better than 100.0: 139
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 485
Number of HSP's gapped (non-prelim): 362
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)