BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037134
         (282 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
           Carboxyatractyloside
 pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
          Length = 297

 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 8/115 (6%)

Query: 44  VARHEGFRALYRGFGTSLMGTIPARAVYIAALKVTKSKVGSFAVSDLGFTXXXXXXXXXX 103
           + + +G R LY+GF  S+ G I  RA Y       K       + D              
Sbjct: 163 IFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKG-----MLPDPKNVHIIVSWMIAQ 217

Query: 104 XXXXXXQLVWTLVNVVTQRLMVAN---GADARYVNGVDMFRKIVRNDGVRGLYRG 155
                  LV    + V +R+M+ +   GAD  Y   VD +RKI +++G +  ++G
Sbjct: 218 TVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKG 272



 Score = 34.3 bits (77), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 125 VANGADARYVNGV-DMFRKIVRNDGVRGLYRGFGISILTNAPSNAVWWPSYSVAQRLV 181
           V  GA  R   G+ +   KI ++DG+RGLY+GF +S+       A ++  Y  A+ ++
Sbjct: 144 VGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML 201


>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
           Determined By Nmr Molecular Fragment Replacement
          Length = 303

 Score = 37.0 bits (84), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 11/151 (7%)

Query: 128 GADARYVNGVDMFRKIVRNDGVRGLYRGFGISILTNAPSNAVWWPSYSVAQ------RLV 181
           G   RY + V+ ++ I R +G+RGL++G   ++  NA  N     +Y + +       L+
Sbjct: 139 GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLM 198

Query: 182 WGGVGCFLRRKYGDREGDMMMIRPDSKTVMAFQGVLDGDENGKRGPTVGQAVKSLVKEGG 241
              + C     +G      ++  P       +     G  +     + G    +++++ G
Sbjct: 199 TDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYH-----SAGHCALTMLRKEG 253

Query: 242 WMACYRGLGPRWXXXXXXXXXXXXXYEFLKR 272
             A Y+G  P +             YE LKR
Sbjct: 254 PRAFYKGFMPSFLRLGSWNVVMFVTYEQLKR 284


>pdb|1UZR|A Chain A, Crystal Structure Of The Class Ib Ribonucleotide Reductase
           R2f-2 Subunit From Mycobacterium Tuberculosis
 pdb|1UZR|B Chain B, Crystal Structure Of The Class Ib Ribonucleotide Reductase
           R2f-2 Subunit From Mycobacterium Tuberculosis
 pdb|1UZR|C Chain C, Crystal Structure Of The Class Ib Ribonucleotide Reductase
           R2f-2 Subunit From Mycobacterium Tuberculosis
          Length = 296

 Score = 29.3 bits (64), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 131 ARYVNGVDMFRKIVRNDGVRGLYRGF 156
           A+  N  DM R I+R++ V G Y G+
Sbjct: 181 AKLTNTADMIRLIIRDEAVHGYYIGY 206


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.139    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,178,860
Number of Sequences: 62578
Number of extensions: 271016
Number of successful extensions: 470
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 460
Number of HSP's gapped (non-prelim): 8
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)