Query 037135
Match_columns 124
No_of_seqs 106 out of 229
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 15:07:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037135.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037135hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jqq_A Conserved oligomeric go 79.1 1.9 6.5E-05 33.5 3.9 41 77-117 82-125 (204)
2 1xc0_A Pardaxin P-4, PA4; BEND 66.0 3 0.0001 23.2 1.6 17 13-29 6-22 (33)
3 3ter_A Mammalian stromal inter 56.3 45 0.0015 24.2 6.9 45 70-119 90-134 (136)
4 2knj_A Microplusin preprotein; 51.9 13 0.00046 25.2 3.3 29 25-53 12-40 (90)
5 2w9j_A Signal recognition part 48.2 9.1 0.00031 25.8 1.9 17 70-86 65-81 (91)
6 1e8o_B SRP14, signal recogniti 48.1 8.8 0.0003 26.5 1.9 18 68-85 71-88 (106)
7 3fp5_A Acyl-COA binding protei 40.1 33 0.0011 23.5 3.8 34 71-106 72-105 (106)
8 1sse_B AP-1 like transcription 37.8 10 0.00035 25.7 0.9 14 10-23 35-48 (86)
9 3swk_A Vimentin; cytoskeleton, 29.7 1.2E+02 0.004 19.8 6.0 42 71-112 22-76 (86)
10 3bw6_A Synaptobrevin homolog Y 27.8 73 0.0025 22.2 4.1 37 43-79 96-136 (144)
11 3j0g_M E3 protein; alphavirus, 27.1 51 0.0017 20.8 2.7 27 7-33 28-54 (59)
12 2l76_A Nfatc2-interacting prot 24.4 23 0.00078 24.2 0.8 26 15-42 36-61 (95)
13 3mko_A Glycoprotein C; trimeri 21.7 1.5E+02 0.0051 21.4 4.7 36 77-112 12-50 (137)
14 2gw6_A TRNA-splicing endonucle 21.3 12 0.00042 26.3 -1.1 12 15-26 5-16 (123)
15 3u5v_A Protein MAX, transcript 20.7 88 0.003 20.0 3.1 25 93-117 46-70 (76)
16 2juc_A PRE-mRNA-splicing facto 20.2 34 0.0012 21.4 0.9 19 5-25 25-43 (59)
No 1
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=79.11 E-value=1.9 Score=33.49 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHhhCC-Ccc
Q 037135 77 EAYYDMLVKYREELTRPIQ--EAMDFIRRIETQLNMLSNG-PVR 117 (124)
Q Consensus 77 eaYc~~L~kykeeL~~p~~--EA~~f~~~iE~QL~~L~~~-~~~ 117 (124)
-.|-.-|-....-|++|.+ |++.+++++-..|+++|+. |+.
T Consensus 82 l~YLkkLD~l~~~Lq~h~~Lse~l~l~kqLs~sLh~mC~~~pld 125 (204)
T 2jqq_A 82 LEYLKKLDEIYGSLRNHSQLTEALSLGKRLSKSLHEMCGIEPLE 125 (204)
T ss_dssp HHHHHHHHHHHHTCSSSSHHHHHHHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 4688888888888988874 9999999999999999986 653
No 2
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=66.01 E-value=3 Score=23.24 Aligned_cols=17 Identities=47% Similarity=0.659 Sum_probs=14.5
Q ss_pred HHHHhhCCCcHHHHHHH
Q 037135 13 KAKIISHPQYSSLLEAY 29 (124)
Q Consensus 13 Ka~I~sHPlYp~LL~A~ 29 (124)
--||++.|++..||+|-
T Consensus 6 ipkiissplfktllsav 22 (33)
T 1xc0_A 6 IPKIISSPLFKTLLSAV 22 (33)
T ss_dssp HHHHTTTTTHHHHHHHH
T ss_pred hhHHHccHHHHHHHHHH
Confidence 35899999999999874
No 3
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=56.33 E-value=45 Score=24.23 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=22.9
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhCCCcccC
Q 037135 70 PELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIETQLNMLSNGPVRIF 119 (124)
Q Consensus 70 pELDqFMeaYc~~L~kykeeL~~p~~EA~~f~~~iE~QL~~L~~~~~~~~ 119 (124)
+.||+++..-...-... +++++-.+|-...- +|+..|||-|+-..
T Consensus 90 sslD~vD~~Il~Ak~aL-~evt~~l~Er~~RW----~qIE~LcgF~iv~~ 134 (136)
T 3ter_A 90 STSDQVDSKIFALKSRM-EKIHTLTRETQERW----LQIESLCGFPLLYL 134 (136)
T ss_dssp CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH----HHHHHHHTSCCC--
T ss_pred CchHHHHHHHHHHHHHH-HHHHHHHHHHHHHH----HHHHHHhCCcCcCC
Confidence 89999986522211111 22223333332222 57788999887543
No 4
>2knj_A Microplusin preprotein; antimicrobial peptide, rhipicephalus (boophilus) microplus, antimicrobial protein; NMR {Rhipicephalus microplus}
Probab=51.86 E-value=13 Score=25.23 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=25.1
Q ss_pred HHHHHHhhhhcCCchhHHHHHHHHHHHHH
Q 037135 25 LLEAYVDCQKVGAPPEVVARLAAARQEFE 53 (124)
Q Consensus 25 LL~A~i~C~KVGaP~e~~~~L~~~~~~~~ 53 (124)
=|.+-++|.|-.+|++.-.+|+++..++.
T Consensus 12 eL~~~l~Cvr~~a~~~l~~kLd~v~~~L~ 40 (90)
T 2knj_A 12 ALVTELECIRLRISPETNAAFDNAVQQLN 40 (90)
T ss_dssp HHHHHHHHHHTCCSSTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 46788999999999999999999877653
No 5
>2w9j_A Signal recognition particle subunit SRP14; radiation-induced phasing, RNA-BI ribonucleoprotein, signaling P arsenic, ALU-domain; 2.60A {Schizosaccharomyces pombe}
Probab=48.22 E-value=9.1 Score=25.82 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=14.9
Q ss_pred CchhhHHHHHHHHHHHH
Q 037135 70 PELDQFMEAYYDMLVKY 86 (124)
Q Consensus 70 pELDqFMeaYc~~L~ky 86 (124)
-+|+.|+.+|+.+|..-
T Consensus 65 ~~l~~F~~~Y~~v~K~~ 81 (91)
T 2w9j_A 65 DYFTDFFQSYAEVXKGQ 81 (91)
T ss_dssp GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 59999999999998653
No 6
>1e8o_B SRP14, signal recognition particle 14 kDa protein; ALU ribonucleoprotein particle, protein recognition of AN RNA U-turn, translational control; HET: GDP; 3.20A {Homo sapiens} SCOP: d.49.1.1 PDB: 1e8s_B 1ry1_D*
Probab=48.10 E-value=8.8 Score=26.48 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=15.1
Q ss_pred CCCchhhHHHHHHHHHHH
Q 037135 68 KDPELDQFMEAYYDMLVK 85 (124)
Q Consensus 68 ~dpELDqFMeaYc~~L~k 85 (124)
.--+|+.|+.+|+.+|..
T Consensus 71 ~~~dl~~F~~~Y~~v~K~ 88 (106)
T 1e8o_B 71 SSKEVNKFQMAYSNLLRA 88 (106)
T ss_dssp ETTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 345999999999999864
No 7
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=40.10 E-value=33 Score=23.53 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=27.3
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 037135 71 ELDQFMEAYYDMLVKYREELTRPIQEAMDFIRRIET 106 (124)
Q Consensus 71 ELDqFMeaYc~~L~kykeeL~~p~~EA~~f~~~iE~ 106 (124)
.-++=|..|+.++.+.... --..||..++.+||.
T Consensus 72 S~eeA~~~YI~~v~~l~~~--~~~~~~~~~~~~le~ 105 (106)
T 3fp5_A 72 SKEVAYQKYVEKLLEILKK--ADTEESKKYIAEIEA 105 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHH--HCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcc--cCcHHHHHHHHHHhc
Confidence 3467799999999998887 344589999999885
No 8
>1sse_B AP-1 like transcription factor YAP1; disulfide bond, nuclear export signal, NES, redox- regulation, transcription activator; NMR {Saccharomyces cerevisiae} SCOP: g.78.1.1
Probab=37.78 E-value=10 Score=25.69 Aligned_cols=14 Identities=43% Similarity=0.788 Sum_probs=11.6
Q ss_pred HHHHHHHhhCCCcH
Q 037135 10 EAIKAKIISHPQYS 23 (124)
Q Consensus 10 ~~iKa~I~sHPlYp 23 (124)
..+=.+|.+||+|.
T Consensus 35 ~~iWd~I~shP~~~ 48 (86)
T 1sse_B 35 SEIWDRITTHPKYS 48 (86)
T ss_dssp HHHHHHHHTCSCCS
T ss_pred HHHHHHHhcCcchh
Confidence 34667999999999
No 9
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=29.73 E-value=1.2e+02 Score=19.77 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=29.0
Q ss_pred chhhHHHHHHHHHHHHHHHh-------------hhhHHHHHHHHHHHHHHHHHhh
Q 037135 71 ELDQFMEAYYDMLVKYREEL-------------TRPIQEAMDFIRRIETQLNMLS 112 (124)
Q Consensus 71 ELDqFMeaYc~~L~kykeeL-------------~~p~~EA~~f~~~iE~QL~~L~ 112 (124)
|+|..-.+--+.=.||.+|+ .+-+++|...--.+|.++.+|.
T Consensus 22 e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 22 ERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 55555555555556666663 4455788888889999999886
No 10
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=27.79 E-value=73 Score=22.24 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhhcc-cCCCCC---CCCCCchhhHHHHH
Q 037135 43 ARLAAARQEFESRQRSS-LNSRDS---TNKDPELDQFMEAY 79 (124)
Q Consensus 43 ~~L~~~~~~~~~~~~~~-~~~~~~---~~~dpELDqFMeaY 79 (124)
.-|+++.+++....... +..... .-+=|+||++|.-|
T Consensus 96 ~~L~~i~~eF~~~y~~~~~~~~~~~~~~~~f~~l~~~i~kY 136 (144)
T 3bw6_A 96 TLLNKILDEYLVAHPKEEWADVTETNDALKMKQLDTYISKY 136 (144)
T ss_dssp HHHHHHHHHHHHHSCGGGTTTCSSCCGGGCCTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccchhhhhcccccCCcchHHHHHHHHHh
Confidence 57889999988765433 322110 01127999999876
No 11
>3j0g_M E3 protein; alphavirus, bioweapon, VEEV; 4.80A {Venezuelan equine encephalitis virus}
Probab=27.07 E-value=51 Score=20.77 Aligned_cols=27 Identities=41% Similarity=0.626 Sum_probs=21.4
Q ss_pred hhHHHHHHHHhhCCCcHHHHHHHHhhh
Q 037135 7 SETEAIKAKIISHPQYSSLLEAYVDCQ 33 (124)
Q Consensus 7 ~e~~~iKa~I~sHPlYp~LL~A~i~C~ 33 (124)
.+.-+|=..=+.||-|-.||.|-+.|.
T Consensus 28 ~~tL~mLe~Nvd~pgY~~LL~a~l~C~ 54 (59)
T 3j0g_M 28 AETLAMLSVNVDNPGYDELLEAAVKCP 54 (59)
T ss_dssp HHHHHHHHHTSSSTTHHHHHHHHHSCC
T ss_pred HHHHHHHHHhCCCccHHHHHHHHhcCc
Confidence 334456666789999999999999994
No 12
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=24.36 E-value=23 Score=24.22 Aligned_cols=26 Identities=12% Similarity=0.310 Sum_probs=21.1
Q ss_pred HHhhCCCcHHHHHHHHhhhhcCCchhHH
Q 037135 15 KIISHPQYSSLLEAYVDCQKVGAPPEVV 42 (124)
Q Consensus 15 ~I~sHPlYp~LL~A~i~C~KVGaP~e~~ 42 (124)
||-.|--...|..|| |.|.|.++..+
T Consensus 36 kIK~tt~l~KL~~aY--c~r~gv~~~si 61 (95)
T 2l76_A 36 PLRMSEPLQSVVDHM--ATHLGVSPSRI 61 (95)
T ss_dssp EECSSSCTHHHHHHH--HHHHTSCGGGE
T ss_pred EEecCChHHHHHHHH--HhhcCCChhhE
Confidence 455666778999999 99999988764
No 13
>3mko_A Glycoprotein C; trimeric coiled-coil, viral protein; 1.80A {Lymphocytic choriomeningitis virus}
Probab=21.75 E-value=1.5e+02 Score=21.36 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=25.3
Q ss_pred HHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHhh
Q 037135 77 EAYYDMLVKY---REELTRPIQEAMDFIRRIETQLNMLS 112 (124)
Q Consensus 77 eaYc~~L~ky---keeL~~p~~EA~~f~~~iE~QL~~L~ 112 (124)
|.+|+||.=| |..+.+--.|+..-++-+-..+++|.
T Consensus 12 eEFCDMLRLfdfNk~AI~~L~~~~~~~lnl~~~aiNsLI 50 (137)
T 3mko_A 12 EEFSDMLRLIDYNKAALSKFKQDVESALHVFKTTVNSLI 50 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999876 45565555677777777777666665
No 14
>2gw6_A TRNA-splicing endonuclease subunit SEN15; SEN15_human, tRNA endonuclease, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: c.52.2.1
Probab=21.29 E-value=12 Score=26.32 Aligned_cols=12 Identities=25% Similarity=0.628 Sum_probs=9.8
Q ss_pred HHhhCCCcHHHH
Q 037135 15 KIISHPQYSSLL 26 (124)
Q Consensus 15 ~I~sHPlYp~LL 26 (124)
-|.+||.|+.+-
T Consensus 5 ~~~~hp~~~~~~ 16 (123)
T 2gw6_A 5 WMGTHPKYLEMM 16 (123)
T ss_dssp SSCSCHHHHHHH
T ss_pred hhhcCCCHHHHH
Confidence 478999999874
No 15
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=20.71 E-value=88 Score=20.00 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCcc
Q 037135 93 PIQEAMDFIRRIETQLNMLSNGPVR 117 (124)
Q Consensus 93 p~~EA~~f~~~iE~QL~~L~~~~~~ 117 (124)
-++.|+.++..++.++.++-..|+.
T Consensus 46 IL~~AieYI~~Lq~~l~e~~~~~~~ 70 (76)
T 3u5v_A 46 ILQQAVQVILGLEQQVRERNLNPLN 70 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3578999999999999998776653
No 16
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=20.25 E-value=34 Score=21.41 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=14.6
Q ss_pred chhhHHHHHHHHhhCCCcHHH
Q 037135 5 ESSETEAIKAKIISHPQYSSL 25 (124)
Q Consensus 5 ~~~e~~~iKa~I~sHPlYp~L 25 (124)
+.|+ ....||+.+|.|-.|
T Consensus 25 s~W~--~e~~ki~~DpRY~~l 43 (59)
T 2juc_A 25 STWS--LQSKKIENDPDFYKI 43 (59)
T ss_dssp TCSH--HHHHHHSSSTTGGGS
T ss_pred Cchh--hhcccccCCCCeeec
Confidence 4555 667799999999765
Done!