BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037138
(806 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGI-SKLVSLQYLNLSKTSIRELPKEL- 547
N LK++ FD + SLT L L N L L G+ +KL SL YLNLS ++ LP +
Sbjct: 38 NSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF 96
Query: 548 KALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRM 583
L LK L L ++ L ++P + + L LR+
Sbjct: 97 DKLTQLKELAL-NTNQLQSLPDGVFDKLTQLKDLRL 131
Score = 35.8 bits (81), Expect = 0.091, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 482 LLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGI-SKLVSLQYLNLSKTSI 540
L L+ N+L+++ F+ + SLT LNLS N L L G+ KL L+ L L+ +
Sbjct: 54 LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQL 112
Query: 541 RELPKEL-KALVNLKYLNLEHSRYLHTIP 568
+ LP + L LK L L ++ L ++P
Sbjct: 113 QSLPDGVFDKLTQLKDLRLYQNQ-LKSVP 140
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
Query: 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKL 520
R ++L NK+ +S +L L N+L+++ FD + +L L L N L L
Sbjct: 66 RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSL 124
Query: 521 RPGI-SKLVSLQYLNLSKTSIRELPKEL-KALVNLKYLNLEHSRYLHTIPRQLICSFSML 578
G+ KL +L YLNL+ ++ LPK + L NL L+L +++ L ++P + + L
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQL 183
Query: 579 HVLRM 583
LR+
Sbjct: 184 KDLRL 188
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGI-SKLVSLQYLNLSKTSIRELPKEL- 547
N+L+++ + FD + +LT L+LS N L L G+ KL L+ L L + ++ +P +
Sbjct: 143 NQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF 201
Query: 548 KALVNLKYLNLEHSRYLHTIPRQLIC 573
L +L+Y+ +LH P C
Sbjct: 202 DRLTSLQYI------WLHDNPWDCTC 221
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 18/181 (9%)
Query: 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKL 520
R ++L NK+ +S +L L N+L+++ FD + +L L L N L L
Sbjct: 66 RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSL 124
Query: 521 RPGI-SKLVSLQYLNLSKTSIRELPKEL-KALVNLKYLNLEHSRYLHTIPRQLICSFSML 578
G+ KL +L YL L ++ LPK + L NL L+L++++ L ++P + + L
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQ-LQSLPEGVFDKLTQL 183
Query: 579 HVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHL----NVLTIALKSFFALQRFLSS 634
L + N + +P + + + L SL H+ N A L R++S
Sbjct: 184 KQLSL-NDNQLKSVP---------DGVFDRLTSLTHIWLLNNPWDCACSDILYLSRWISQ 233
Query: 635 H 635
H
Sbjct: 234 H 234
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPK-ELK 548
N+LK++ R FD + LT L+L N + + KL SL+ L L ++ +P+
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178
Query: 549 ALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRM 583
L LK L L++++ L +P S L +L++
Sbjct: 179 KLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQL 212
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 481 HLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGI-SKLVSLQYLNLSKTS 539
+L +L+ N+L+ + FD + +L L L N L L P + L L YL+L
Sbjct: 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNE 144
Query: 540 IRELPKEL-KALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVN 585
++ LPK + L +LK L L ++ L +P + L L++ N
Sbjct: 145 LQSLPKGVFDKLTSLKELRL-YNNQLKRVPEGAFDKLTELKTLKLDN 190
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 481 HLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540
+L L+ N+L + FD + LTVL+L N +LV L+ L + +
Sbjct: 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 541 RELPKELKALVNLKYLNLEHSRYLHTIPR 569
ELP+ ++ L +L +L L+ ++ L +IP
Sbjct: 125 TELPRGIERLTHLTHLALDQNQ-LKSIPH 152
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 37.0 bits (84), Expect = 0.045, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 477 PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGI-SKLVSLQYLNL 535
PT +L L+ N R+ + FD + LT L+L NN LT L G+ KL L L+L
Sbjct: 29 PTTTQVLYLYDN--RITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSL 85
Query: 536 SKTSIRELPK----ELKALVNLKYLN 557
+ ++ +P+ L++L ++ LN
Sbjct: 86 NDNQLKSIPRGAFDNLRSLTHIWLLN 111
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 527 LVSLQYLNLSKTSIRELPKELKALVNLKYLNLEHSRY------LHTIPRQLICSFSMLHV 580
LV+LQ L L T IR LP + L NLK L + +S +H +P+
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA 241
Query: 581 LRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVL 618
LR + G+ PL ++ C +L+ + + L L
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKE-LK 548
NR+ I+ +L L L++NG T S L SL++L+LS + L K
Sbjct: 62 NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121
Query: 549 ALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKI 592
L +L +LNL + Y L + L +LR+ N D KI
Sbjct: 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 503 MPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYLNLEHSR 562
+ +L + N+S N F K L L L+ S+ ELP E+K L NL+ L+L H+R
Sbjct: 231 LSNLQIFNISANIF---------KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR 281
Query: 563 YLHTIPRQLICSFSM 577
L ++P +L F +
Sbjct: 282 -LTSLPAELGSCFQL 295
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 500 FDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYLNLE 559
+DF LT L L+ N LT+L I L +L+ L+LS + LP EL + LKY
Sbjct: 246 YDF---LTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYF- 300
Query: 560 HSRYLHTIPRQL--ICSFSMLHV 580
+ T+P + +C+ L V
Sbjct: 301 FDNMVTTLPWEFGNLCNLQFLGV 323
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 36.2 bits (82), Expect = 0.077, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 477 PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGI-SKLVSLQYLNL 535
PT +L L+ N ++ + FD + LT L+L NN LT L G+ KL L L+L
Sbjct: 37 PTTTQVLYLYDN--QITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSL 93
Query: 536 SKTSIRELPK----ELKALVNLKYLN 557
+ ++ +P+ LK+L ++ LN
Sbjct: 94 NDNQLKSIPRGAFDNLKSLTHIWLLN 119
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 36.2 bits (82), Expect = 0.081, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 477 PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGI-SKLVSLQYLNL 535
PT +L L+ N ++ + FD + LT L+L NN LT L G+ KL L L+L
Sbjct: 29 PTTTQVLYLYDN--QITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSL 85
Query: 536 SKTSIRELPK----ELKALVNLKYLN 557
+ ++ +P+ LK+L ++ LN
Sbjct: 86 NDNQLKSIPRGAFDNLKSLTHIWLLN 111
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 32/171 (18%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNN---------------------GFLTKL----RPGI 524
NRL T+ + F+++ L L L NN G L +L
Sbjct: 93 NRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAF 152
Query: 525 SKLVSLQYLNLSKTSIRELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMV 584
LV+L+YLNL +++++P L ALV L+ L L +R P SF L LR +
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPG----SFQGLTSLRKL 207
Query: 585 NCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSH 635
++ ++ F +SL E ++L H N++++ F L R H
Sbjct: 208 WLMHAQVATIERNAFDDLKSLEE--LNLSHNNLMSLPHDLFTPLHRLERVH 256
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 8/151 (5%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPG-ISKLVSLQYLNLSKTSIRELPKELK 548
N +++I F+ +PSL L+L L + G L +L+YLNL +I+++P L
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LT 215
Query: 549 ALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEE 608
LV L+ L + + + P SF L L+ + S ++ F G SLVE
Sbjct: 216 PLVGLEELEMSGNHFPEIRPG----SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE- 270
Query: 609 LISLKHLNVLTIALKSFFALQRFLSSHELQN 639
++L H N+ ++ F L+ + H N
Sbjct: 271 -LNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 32/171 (18%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNN---------------------GFLTKL----RPGI 524
NRL T+ + F+++ L L L NN G L +L
Sbjct: 93 NRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAF 152
Query: 525 SKLVSLQYLNLSKTSIRELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMV 584
LV+L+YLNL +++++P L ALV L+ L L +R P SF L LR +
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPG----SFQGLTSLRKL 207
Query: 585 NCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSH 635
++ ++ F +SL E ++L H N++++ F L R H
Sbjct: 208 WLMHAQVATIERNAFDDLKSLEE--LNLSHNNLMSLPHDLFTPLHRLERVH 256
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKE-LK 548
NR+ I+ +L L L++NG T S L SL++L+LS + L K
Sbjct: 36 NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 95
Query: 549 ALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKI 592
L +L +LNL + Y L + L +LR+ N D KI
Sbjct: 96 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 139
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKL--VSLQYLNLSKTSIRELPKEL 547
N+L+++ FD + LT L+LS+NG K S SL+YL+LS + +
Sbjct: 38 NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 97
Query: 548 KALVNLKYLNLEHSR 562
L L++L+ +HS
Sbjct: 98 LGLEQLEHLDFQHSN 112
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 477 PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGI-SKLVSLQYLNL 535
PT +L L+ IN++ + FD + LT LNL+ N LT L G+ KL L +L L
Sbjct: 39 PTTTQVLHLY--INQITKLEPGVFDSLTQLTYLNLAVNQ-LTALPVGVFDKLTKLTHLAL 95
Query: 536 SKTSIRELP----KELKALVNLKYLN 557
++ +P LK+L ++ N
Sbjct: 96 HINQLKSIPMGVFDNLKSLTHIYLFN 121
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPG-ISKLVSLQYLNLSKTSIRELPKELK 548
N +++I F+ +PSL L+L L+ + G L +L+YLNL+ ++RE+P L
Sbjct: 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LT 204
Query: 549 ALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEE 608
L+ L L+L + P SF L L+ + S ++ F +SLVE
Sbjct: 205 PLIKLDELDLSGNHLSAIRPG----SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE- 259
Query: 609 LISLKHLNVLTIALKSFFA----LQRFLSSHELQNC 640
I+L H N LT+ F L+R H NC
Sbjct: 260 -INLAH-NNLTLLPHDLFTPLHHLERIHLHHNPWNC 293
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIR-ELPKELK 548
N+L R L +LN+S+N F+ + P L SLQYL+L++ E+P L
Sbjct: 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLS 290
Query: 549 ALVN-LKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSIL 598
+ L L+L + + +P + + N ++SG++P+D++L
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NFSGELPMDTLL 340
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 53/151 (35%)
Query: 505 SLTVLNLSNNGFLTKLRPGI---SKLVSLQ-------------------------YLNLS 536
+L L L NNGF K+ P + S+LVSL +LN+
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 537 KTSI---------------------RELPKELKALVNLKYLNLEHSRYLHTIPRQLICSF 575
+ I E+P L NL +++L ++R IP+ I
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRL 513
Query: 576 SMLHVLRMVNCDYSGKIPLDSILFGGCESLV 606
L +L++ N +SG IP + G C SL+
Sbjct: 514 ENLAILKLSNNSFSGNIPAE---LGDCRSLI 541
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 502 FMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIR-ELPKELKALVNLKYLNLEH 560
++ +L L L N ++ G+S +L +++LS + E+PK + L NL L L +
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523
Query: 561 SRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIP 593
+ + IP +L S++ + N ++G IP
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNL-FNGTIP 555
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 300 DIPKLAHTLAKECGGLPLALITTGLGCKKSQEEWSYAIEILR 341
D+P+ AH++ KEC G PL + G + W Y ++ L+
Sbjct: 305 DLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQ 346
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIR-ELPKELK 548
N+L R L +LN+S+N F+ + P L SLQYL+L++ E+P L
Sbjct: 230 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLS 287
Query: 549 ALVN-LKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSIL 598
+ L L+L + + +P + + N ++SG++P+D++L
Sbjct: 288 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NFSGELPMDTLL 337
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 53/151 (35%)
Query: 505 SLTVLNLSNNGFLTKLRPGI---SKLVSLQ-------------------------YLNLS 536
+L L L NNGF K+ P + S+LVSL +LN+
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 537 KTSI---------------------RELPKELKALVNLKYLNLEHSRYLHTIPRQLICSF 575
+ I E+P L NL +++L ++R IP+ I
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRL 510
Query: 576 SMLHVLRMVNCDYSGKIPLDSILFGGCESLV 606
L +L++ N +SG IP + G C SL+
Sbjct: 511 ENLAILKLSNNSFSGNIPAE---LGDCRSLI 538
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 502 FMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIR-ELPKELKALVNLKYLNLEH 560
++ +L L L N ++ G+S +L +++LS + E+PK + L NL L L +
Sbjct: 461 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 520
Query: 561 SRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIP 593
+ + IP +L S++ + N ++G IP
Sbjct: 521 NSFSGNIPAELGDCRSLIWLDLNTNL-FNGTIP 552
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 300 DIPKLAHTLAKECGGLPLALITTGLGCKKSQEEWSYAIEILR 341
D+P+ AH++ KEC G PL + G + W Y ++ L+
Sbjct: 311 DLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQ 352
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 22/159 (13%)
Query: 462 RISLMRNKIEKLSDTP--TCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTK 519
+++L +N+I K+ D HLL L + N L +I R F+ + L VL+LS N
Sbjct: 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRAL 362
Query: 520 LRPGISKLVSLQYLNLSKTSIRELPKEL-KALVNLKYLNLEHSRYLHTIPRQLICSFSML 578
L +L+ L L ++ +P + L +L+ + +LHT P C +
Sbjct: 363 GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI------WLHTNPWDCSCP-RID 415
Query: 579 HVLRMVN-----------CDYSGKIPLDSILFGGCESLV 606
++ R +N C SGK P+ SI+ SLV
Sbjct: 416 YLSRWLNKNSQKEQGSAKCSGSGK-PVRSIICPTSASLV 453
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 463 ISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGF--LTKL 520
I N+I KL P L +L N NR+ I +P LT L L+NN L L
Sbjct: 47 IDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL 106
Query: 521 RPGISKLVSLQYL 533
P ++ L SL YL
Sbjct: 107 DP-LASLKSLTYL 118
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.7 bits (73), Expect = 0.83, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 460 RRRISLMRNKIEKLSDTPTCPHLLSL---FPNINRLKTIARRFFDFMPSLTVLNLSNNGF 516
++R+ L N+I KL + HL++L + N N+L I FD + LT L+L++N
Sbjct: 35 KQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
Query: 517 LTKLRPGISKLVSLQYLNL 535
+ R L SL ++ L
Sbjct: 94 KSIPRGAFDNLKSLTHIYL 112
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 26/122 (21%)
Query: 465 LMRNKIEKLSDTPTCP------------HLLSLFPNI-----------NRLKTIARRFFD 501
L+ NKI K+ + P HL+ + PN+ NR++ + + F
Sbjct: 85 LVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFS 144
Query: 502 FMPSLTVLNLSNNGFL-TKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYLNLEH 560
+ ++ + + N + PG + L YL +S+ + +PK+L +N L+L+H
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN--ELHLDH 202
Query: 561 SR 562
++
Sbjct: 203 NK 204
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 300 DIPKLAHTLAKECGGLPLALITTGLGCKKSQEEWSYAIEILR 341
D+P AH++ KEC G PL + G + W+Y + L+
Sbjct: 305 DLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQ 346
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 300 DIPKLAHTLAKECGGLPLALITTGLGCKKSQEEWSYAIEILR 341
D+P AH++ KEC G PL + G + W+Y + L+
Sbjct: 312 DLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQ 353
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 481 HLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540
L L+ N+LK++ FD + L L L+ N + KL +LQ L+LS +
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 541 RELP 544
+ +P
Sbjct: 168 QSVP 171
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGI-SKLVSLQYLNLSKTSIRELPKEL- 547
N+L+T++ FD + L L L+NN L L G+ L L L L ++ LP +
Sbjct: 69 NQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF 127
Query: 548 KALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRM 583
L LK L L ++ L +IP + L L +
Sbjct: 128 DRLTKLKELRL-NTNQLQSIPAGAFDKLTNLQTLSL 162
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 503 MPSLTVLNLSNNGFLTKLRPGISKL--VSLQYLNLSKTSIRELPKELKALVNLKYLNLEH 560
+PSL L+LS NG K S +SL+YL+LS + + L L++L+ +H
Sbjct: 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 429
Query: 561 SR 562
S
Sbjct: 430 SN 431
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 481 HLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540
L L+ N+LK++ FD + L L L+ N + KL +LQ L+LS +
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 541 RELP 544
+ +P
Sbjct: 168 QSVP 171
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGI-SKLVSLQYLNLSKTSIRELPKEL- 547
N+L+T++ FD + L L L+NN L L G+ L L L L ++ LP +
Sbjct: 69 NQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF 127
Query: 548 KALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRM 583
L LK L L ++ L +IP + L L +
Sbjct: 128 DRLTKLKELRL-NTNQLQSIPAGAFDKLTNLQTLSL 162
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 13/119 (10%)
Query: 505 SLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIREL-PKELKALVNLKYLNLE---- 559
+LT+L+LS N + L L+Y L +I+ L L L N++YLNL+
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308
Query: 560 -HSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNV 617
S L ++P+ SF L L +N + + + S +F G LI+LK+L++
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG-------LINLKYLSL 360
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 13/119 (10%)
Query: 505 SLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIREL-PKELKALVNLKYLNLE---- 559
+LT+L+LS N + L L+Y L +I+ L L L N++YLNL+
Sbjct: 259 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 318
Query: 560 -HSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNV 617
S L ++P+ SF L L +N + + + S +F G LI+LK+L++
Sbjct: 319 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG-------LINLKYLSL 370
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 13/119 (10%)
Query: 505 SLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIREL-PKELKALVNLKYLNLE---- 559
+LT+L+LS N + L L+Y L +I+ L L L N++YLNL+
Sbjct: 254 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 313
Query: 560 -HSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNV 617
S L ++P+ SF L L +N + + + S +F G LI+LK+L++
Sbjct: 314 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG-------LINLKYLSL 365
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 483 LSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRE 542
L+ PNI+ F ++ L LN+ +N + + LVSL+YL+LSKT
Sbjct: 314 LASHPNIDDFS------FQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFT-- 365
Query: 543 LPKELKALVNLKYLNLEHSRYL 564
L+ L N +++L HS L
Sbjct: 366 ---SLQTLTNETFVSLAHSPLL 384
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 39/145 (26%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKA 549
N L + F ++PSL + +SL+Y N+ + S P+
Sbjct: 258 NNLHDVGNGSFSYLPSL-------------------RYLSLEYNNIQRLS----PRSFYG 294
Query: 550 LVNLKYLNL-----EHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCES 604
L NL+YL+L + S L + P SF L L +N D + S F G
Sbjct: 295 LSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTG--- 351
Query: 605 LVEELISLKHLNVLTIALKSFFALQ 629
L+SLK+L++ K+F +LQ
Sbjct: 352 ----LVSLKYLSL----SKTFTSLQ 368
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 492 LKTIARRFFDFMPSLTVLNLSNNGFLTKLRP-GISKLVSLQYLNLSKTSIRELPKELKAL 550
L+ I F +P L + + L + P L +LQYL +S T I+ LP ++ +
Sbjct: 67 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DVHKI 125
Query: 551 VNLK--YLNLEHSRYLHTIPRQLICSFSMLHVLRMVN 585
+L+ L+++ + +HTI R S V+ +N
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 20/138 (14%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPG-ISKLVSLQYLNLSKTSIRELPKEL- 547
N LKT+ P L L+L+NN LT+L G ++ L +L L L + S+ +PK
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 548 -KALVNLKYLN----------LEHSRYLHT------IPRQLICSFSMLHVLRMVNCDYSG 590
L+ +L+ L R+L + +Q + +M + V CD S
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQCDNSD 252
Query: 591 KIPLDSILFGGCESLVEE 608
K P+ GC +L +E
Sbjct: 253 KFPVYKYPGKGCPTLGDE 270
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 31/147 (21%)
Query: 462 RISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGF----- 516
+++L R ++ KL T P L +L + N+L+++ +P+LTVL++S N
Sbjct: 59 QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPL 117
Query: 517 ------------------LTKLRPG-ISKLVSLQYLNLSKTSIRELPKE-LKALVNLKYL 556
L L PG ++ L+ L+L+ ++ ELP L L NL L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 557 NLEHSRYLHTIPRQLICS----FSMLH 579
L+ + L+TIP+ S F+ LH
Sbjct: 178 LLQENS-LYTIPKGFFGSHLLPFAFLH 203
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 20/138 (14%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPG-ISKLVSLQYLNLSKTSIRELPKEL- 547
N LKT+ P L L+L+NN LT+L G ++ L +L L L + S+ +PK
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 548 -KALVNLKYLN----------LEHSRYLHT------IPRQLICSFSMLHVLRMVNCDYSG 590
L+ +L+ L R+L + +Q + +M + V CD S
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQCDNSD 252
Query: 591 KIPLDSILFGGCESLVEE 608
K P+ GC +L +E
Sbjct: 253 KFPVYKYPGKGCPTLGDE 270
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 31/147 (21%)
Query: 462 RISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGF----- 516
+++L R ++ KL T P L +L + N+L+++ +P+LTVL++S N
Sbjct: 59 QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPL 117
Query: 517 ------------------LTKLRPG-ISKLVSLQYLNLSKTSIRELPKE-LKALVNLKYL 556
L L PG ++ L+ L+L+ ++ ELP L L NL L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 557 NLEHSRYLHTIPRQLICS----FSMLH 579
L+ + L+TIP+ S F+ LH
Sbjct: 178 LLQENS-LYTIPKGFFGSHLLPFAFLH 203
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 20/138 (14%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPG-ISKLVSLQYLNLSKTSIRELPKEL- 547
N LKT+ P L L+L+NN LT+L G ++ L +L L L + S+ +PK
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANND-LTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 548 -KALVNLKYLN----------LEHSRYLHT------IPRQLICSFSMLHVLRMVNCDYSG 590
L+ +L+ L R+L + +Q + +M + V CD S
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQCDNSD 252
Query: 591 KIPLDSILFGGCESLVEE 608
K P+ GC +L +E
Sbjct: 253 KFPVYKYPGKGCPTLGDE 270
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 31/147 (21%)
Query: 462 RISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGF----- 516
+++L R ++ KL T P L +L + N+L+++ +P+LTVL++S N
Sbjct: 59 QLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPL 117
Query: 517 ------------------LTKLRPG-ISKLVSLQYLNLSKTSIRELPKE-LKALVNLKYL 556
L L PG ++ L+ L+L+ + ELP L L NL L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTL 177
Query: 557 NLEHSRYLHTIPRQLICS----FSMLH 579
L+ + L+TIP+ S F+ LH
Sbjct: 178 LLQENS-LYTIPKGFFGSHLLPFAFLH 203
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPG-ISKLVSLQYLNLSKTSIRELPKEL 547
N++ I F + +L L L NN ++K+ PG + LV L+ L LSK ++ELP+++
Sbjct: 62 NKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 20/138 (14%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPG-ISKLVSLQYLNLSKTSIRELPKEL- 547
N LKT+ P L L+L+NN LT+L G ++ L +L L L + S+ +PK
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 548 -KALVNLKYLN----------LEHSRYLHT------IPRQLICSFSMLHVLRMVNCDYSG 590
L+ +L+ L R+L + +Q + +M + V CD S
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQCDNSD 252
Query: 591 KIPLDSILFGGCESLVEE 608
K P+ GC +L +E
Sbjct: 253 KFPVYKYPGKGCPTLGDE 270
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 31/147 (21%)
Query: 462 RISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGF----- 516
+++L R ++ KL T P L +L + N+L+++ +P+LTVL++S N
Sbjct: 59 QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPL 117
Query: 517 ------------------LTKLRPG-ISKLVSLQYLNLSKTSIRELPKE-LKALVNLKYL 556
L L PG ++ L+ L+L+ ++ ELP L L NL L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 557 NLEHSRYLHTIPRQLICS----FSMLH 579
L+ + L+TIP+ S F+ LH
Sbjct: 178 LLQENS-LYTIPKGFFGSHLLPFAFLH 203
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPG-ISKLVSLQYLNLSKTSIRELPKEL 547
N++ I F + +L L L NN ++K+ PG + LV L+ L LSK ++ELP+++
Sbjct: 62 NKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 503 MPSLTVLNLSNNGFLTKLRPGISKL--VSLQYLNLSKTSIRELPKELKALVNLKYLNLEH 560
+PSL L+LS NG K S SL+YL+LS + + L L++L+ +H
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405
Query: 561 SR 562
S
Sbjct: 406 SN 407
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 13/111 (11%)
Query: 492 LKTIARRFFDFMPSLTVLNLSNNGFLTKLRP-GISKLVSLQYLNLSKTSIRELPKELKAL 550
L+ I F +P L + + L + P L +LQYL +S T I+ LP ++ +
Sbjct: 67 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DVHKI 125
Query: 551 VNLK--YLNLEHSRYLHTIPRQLICSFSMLHVL---------RMVNCDYSG 590
+L+ L+++ + +HTI R S V+ + NC ++G
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNG 176
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 503 MPSLTVLNLSNNGFLTKLRPGISKL--VSLQYLNLSKTSIRELPKELKALVNLKYLNLEH 560
+PSL L+LS NG K S SL+YL+LS + + L L++L+ +H
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405
Query: 561 SR 562
S
Sbjct: 406 SN 407
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 20/138 (14%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPG-ISKLVSLQYLNLSKTSIRELPKEL- 547
N LKT+ P L L+L+NN LT+L G ++ L +L L L + S+ +PK
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 548 -KALVNLKYLN----------LEHSRYLHT------IPRQLICSFSMLHVLRMVNCDYSG 590
L+ +L+ L R+L + +Q + +M + V CD S
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQCDNSD 252
Query: 591 KIPLDSILFGGCESLVEE 608
K P+ GC +L +E
Sbjct: 253 KFPVYKYPGKGCPTLGDE 270
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 20/138 (14%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGI-SKLVSLQYLNLSKTSIRELPKEL- 547
N LKT+ P L L+L+NN LT+L G+ + L +L L L + S+ +PK
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQ-LTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 548 -KALVNLKYLN----------LEHSRYLHT------IPRQLICSFSMLHVLRMVNCDYSG 590
L+ +L+ L R+L + +Q + +M + V CD S
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQCDNSD 252
Query: 591 KIPLDSILFGGCESLVEE 608
K P+ GC +L +E
Sbjct: 253 KFPVYKYPGKGCPTLGDE 270
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 31/147 (21%)
Query: 462 RISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGF----- 516
+++L R ++ KL T P L +L + N+L+++ +P+LTVL++S N
Sbjct: 59 QLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPL 117
Query: 517 ------------------LTKLRPG-ISKLVSLQYLNLSKTSIRELPKE-LKALVNLKYL 556
L L PG ++ L+ L+L+ + ELP L L NL L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
Query: 557 NLEHSRYLHTIPRQLICS----FSMLH 579
L+ + L+TIP+ S F+ LH
Sbjct: 178 LLQENS-LYTIPKGFFGSHLLPFAFLH 203
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 20/138 (14%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPG-ISKLVSLQYLNLSKTSIRELPKEL- 547
N LKT+ P L L+L+NN LT+L G ++ L +L L L + S+ +PK
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 193
Query: 548 -KALVNLKYLN----------LEHSRYLHT------IPRQLICSFSMLHVLRMVNCDYSG 590
L+ +L+ L R+L + +Q + +M + V CD S
Sbjct: 194 GSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQCDNSD 253
Query: 591 KIPLDSILFGGCESLVEE 608
K P+ GC +L +E
Sbjct: 254 KFPVYKYPGKGCPTLGDE 271
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 490 NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKEL-K 548
N+L+++ FD + LT L+LS N + KL L L L + ++ LP +
Sbjct: 38 NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFD 97
Query: 549 ALVNLKYLNLEHSRYLHTIP 568
L LK L L+ + L ++P
Sbjct: 98 KLTQLKELALD-TNQLKSVP 116
>pdb|3QWN|A Chain A, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
pdb|3QWN|B Chain B, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
pdb|3QWN|C Chain C, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
pdb|3QWN|D Chain D, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
pdb|3QWN|E Chain E, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
pdb|3QWN|F Chain F, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
pdb|3QWN|G Chain G, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
pdb|3QWN|H Chain H, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
pdb|3QWN|I Chain I, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
pdb|3QWN|J Chain J, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
pdb|3QWN|K Chain K, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
pdb|3QWN|L Chain L, Crystal Structure Of A Hypothetical Nigd-Like Protein
(Baccac_03262) From Bacteroides Caccae At 2.42 A
Resolution
Length = 214
Score = 29.3 bits (64), Expect = 8.8, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 385 KIDKIELIECWIGEGFLNGYEGAEVHNQGYYIIGILVHACLLEEVGS-DHVRMHDAIRD 442
K D ++++ W+G G+LN +V+ ++ GI+ E G+ + + HDA D
Sbjct: 96 KHDPVDVVSIWLGRGYLNXILNLKVNGGKQHVFGIVEDLSEFETNGTVNXLLYHDANGD 154
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 31/147 (21%)
Query: 462 RISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGF----- 516
+++L R ++ KL T P L +L + N+L+++ +P+LTVL++S N
Sbjct: 59 QLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPL 117
Query: 517 ------------------LTKLRPG-ISKLVSLQYLNLSKTSIRELPKE-LKALVNLKYL 556
L L PG ++ L+ L+L+ + ELP L L NL L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
Query: 557 NLEHSRYLHTIPRQLICS----FSMLH 579
L+ + L+TIP+ S F+ LH
Sbjct: 178 LLQENS-LYTIPKGFFGSHLLPFAFLH 203
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 527 LVSLQYLNLSKTSIRELPKE-LKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVN 585
L SL++L+LS + L L +LKYLNL + Y L + + L LR+ N
Sbjct: 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132
Query: 586 CDYSGKIPLDSILFGGCESLVE-ELISLKHLNVLTIALKS 624
+ +I I F G SL E E+ +L N + +LKS
Sbjct: 133 VETFSEI--RRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,953,780
Number of Sequences: 62578
Number of extensions: 862062
Number of successful extensions: 2130
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1964
Number of HSP's gapped (non-prelim): 152
length of query: 806
length of database: 14,973,337
effective HSP length: 107
effective length of query: 699
effective length of database: 8,277,491
effective search space: 5785966209
effective search space used: 5785966209
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)