Query 037138
Match_columns 806
No_of_seqs 699 out of 3710
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 09:01:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.4E-95 7E-100 835.3 49.9 774 4-804 18-876 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.3E-61 4.9E-66 587.9 46.9 587 135-781 184-914 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 4.2E-44 9.1E-49 375.3 16.0 263 140-404 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.8 6.4E-21 1.4E-25 233.8 15.4 236 461-714 121-369 (968)
5 PLN00113 leucine-rich repeat r 99.8 2.3E-20 4.9E-25 229.0 15.8 269 461-746 143-437 (968)
6 KOG0444 Cytoskeletal regulator 99.8 2.7E-21 5.9E-26 201.9 -2.1 255 461-746 58-325 (1255)
7 KOG4194 Membrane glycoprotein 99.8 8E-20 1.7E-24 190.1 2.5 285 460-782 127-427 (873)
8 KOG0444 Cytoskeletal regulator 99.8 2.6E-20 5.7E-25 194.6 -3.2 289 461-783 35-351 (1255)
9 KOG4194 Membrane glycoprotein 99.7 1.9E-18 4.1E-23 179.9 6.0 271 480-782 78-376 (873)
10 PLN03210 Resistant to P. syrin 99.7 2.6E-16 5.5E-21 193.3 13.9 284 477-795 555-903 (1153)
11 KOG0472 Leucine-rich repeat pr 99.7 7.6E-19 1.6E-23 175.2 -7.2 146 466-629 145-291 (565)
12 KOG0472 Leucine-rich repeat pr 99.6 1.5E-17 3.3E-22 166.0 -7.7 228 480-746 45-284 (565)
13 KOG0618 Serine/threonine phosp 99.5 8.5E-16 1.8E-20 169.1 0.9 90 477-569 42-131 (1081)
14 KOG0617 Ras suppressor protein 99.5 1.2E-15 2.7E-20 134.9 -4.6 162 469-675 22-184 (264)
15 PRK15370 E3 ubiquitin-protein 99.4 3.4E-13 7.3E-18 154.9 10.8 139 461-628 181-319 (754)
16 KOG0617 Ras suppressor protein 99.4 1.2E-14 2.7E-19 128.6 -3.4 151 461-629 36-189 (264)
17 PRK15387 E3 ubiquitin-protein 99.4 2E-12 4.2E-17 147.6 12.7 237 463-746 206-454 (788)
18 PRK15387 E3 ubiquitin-protein 99.4 2.9E-12 6.4E-17 146.2 11.8 243 481-786 202-460 (788)
19 KOG0618 Serine/threonine phosp 99.3 1.2E-13 2.5E-18 152.6 -1.1 246 461-749 222-488 (1081)
20 PRK04841 transcriptional regul 99.3 2.1E-10 4.5E-15 140.5 26.4 273 134-448 13-332 (903)
21 PRK15370 E3 ubiquitin-protein 99.2 1.2E-11 2.5E-16 142.3 8.2 177 461-675 202-378 (754)
22 PRK00411 cdc6 cell division co 99.2 9.2E-10 2E-14 120.8 22.8 278 134-429 29-358 (394)
23 TIGR03015 pepcterm_ATPase puta 99.2 1.5E-09 3.1E-14 112.5 22.6 166 154-323 41-239 (269)
24 KOG4658 Apoptotic ATPase [Sign 99.2 7E-12 1.5E-16 146.4 5.6 135 473-624 516-653 (889)
25 KOG4237 Extracellular matrix p 99.2 3.1E-13 6.7E-18 135.5 -5.4 131 480-624 67-199 (498)
26 cd00116 LRR_RI Leucine-rich re 99.2 1.5E-11 3.3E-16 131.1 5.1 139 478-626 21-178 (319)
27 TIGR02928 orc1/cdc6 family rep 99.1 1.2E-08 2.6E-13 110.8 26.0 278 135-429 15-350 (365)
28 PF01637 Arch_ATPase: Archaeal 99.1 1.3E-10 2.9E-15 117.7 9.8 180 137-321 1-233 (234)
29 PF14580 LRR_9: Leucine-rich r 99.1 5.2E-11 1.1E-15 111.5 5.6 141 466-621 5-148 (175)
30 KOG4237 Extracellular matrix p 99.1 6.6E-12 1.4E-16 126.1 -1.7 126 461-587 70-199 (498)
31 cd00116 LRR_RI Leucine-rich re 99.1 1.1E-10 2.5E-15 124.4 5.9 249 477-782 48-318 (319)
32 TIGR00635 ruvB Holliday juncti 99.0 3.1E-08 6.6E-13 104.6 21.0 251 135-431 4-291 (305)
33 PRK00080 ruvB Holliday junctio 99.0 4.8E-08 1E-12 103.7 22.1 258 135-429 25-310 (328)
34 COG2909 MalT ATP-dependent tra 99.0 5.1E-08 1.1E-12 108.5 20.4 272 136-448 20-338 (894)
35 KOG0532 Leucine-rich repeat (L 98.9 5.6E-11 1.2E-15 124.9 -2.9 200 464-688 56-270 (722)
36 PF05729 NACHT: NACHT domain 98.9 4.6E-09 9.9E-14 100.0 10.0 129 157-290 1-163 (166)
37 PF14580 LRR_9: Leucine-rich r 98.9 1.2E-09 2.6E-14 102.3 3.5 123 460-586 21-150 (175)
38 KOG0532 Leucine-rich repeat (L 98.9 1.4E-10 3E-15 122.0 -3.7 215 484-747 54-270 (722)
39 COG2256 MGS1 ATPase related to 98.8 2.7E-08 5.8E-13 101.6 11.8 156 134-318 29-208 (436)
40 KOG3207 Beta-tubulin folding c 98.8 1.4E-09 3E-14 111.2 2.0 138 477-628 118-261 (505)
41 PRK06893 DNA replication initi 98.8 6.1E-08 1.3E-12 96.9 12.2 137 154-319 37-200 (229)
42 COG3899 Predicted ATPase [Gene 98.8 1.2E-07 2.7E-12 111.6 16.3 289 137-447 2-385 (849)
43 PRK13342 recombination factor 98.7 7.6E-08 1.6E-12 105.3 13.2 163 135-322 12-196 (413)
44 KOG3207 Beta-tubulin folding c 98.7 4E-09 8.7E-14 108.0 2.3 182 461-676 124-313 (505)
45 PLN03150 hypothetical protein; 98.7 2.6E-08 5.7E-13 114.5 8.1 108 481-589 419-528 (623)
46 COG4886 Leucine-rich repeat (L 98.7 1E-08 2.2E-13 112.7 3.8 177 501-714 113-290 (394)
47 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.7E-07 3.8E-12 94.2 12.3 152 140-320 22-199 (226)
48 PTZ00112 origin recognition co 98.6 3.6E-07 7.7E-12 102.7 14.5 190 134-323 754-983 (1164)
49 KOG1259 Nischarin, modulator o 98.6 3.8E-09 8.3E-14 102.5 -1.0 134 477-628 281-414 (490)
50 COG1474 CDC6 Cdc6-related prot 98.6 1.5E-06 3.2E-11 92.2 18.4 186 135-322 17-238 (366)
51 KOG1259 Nischarin, modulator o 98.6 6E-09 1.3E-13 101.2 0.2 129 503-676 283-411 (490)
52 PLN03150 hypothetical protein; 98.6 6.9E-08 1.5E-12 111.0 8.5 88 505-593 419-507 (623)
53 PRK04195 replication factor C 98.6 3.6E-06 7.9E-11 94.1 21.9 229 135-404 14-272 (482)
54 PF13173 AAA_14: AAA domain 98.6 1.1E-07 2.3E-12 85.8 7.4 107 156-281 2-126 (128)
55 TIGR02903 spore_lon_C ATP-depe 98.6 1.2E-05 2.7E-10 91.8 25.5 185 135-323 154-396 (615)
56 PF13855 LRR_8: Leucine rich r 98.6 3.9E-08 8.5E-13 75.5 3.6 59 481-539 2-60 (61)
57 KOG2028 ATPase related to the 98.6 8.2E-07 1.8E-11 89.0 13.6 149 147-316 153-330 (554)
58 PLN03025 replication factor C 98.6 7.5E-07 1.6E-11 94.1 14.4 165 135-316 13-194 (319)
59 PRK05564 DNA polymerase III su 98.6 1.8E-06 3.8E-11 91.1 16.5 166 136-323 5-191 (313)
60 PRK07003 DNA polymerase III su 98.6 9.7E-07 2.1E-11 98.9 14.8 168 135-321 16-220 (830)
61 PRK14949 DNA polymerase III su 98.5 1.5E-06 3.3E-11 99.3 16.4 166 135-319 16-217 (944)
62 PRK12402 replication factor C 98.5 9.6E-07 2.1E-11 94.8 14.3 180 135-319 15-223 (337)
63 PRK08727 hypothetical protein; 98.5 9.1E-07 2E-11 88.7 12.8 151 137-316 22-198 (233)
64 PTZ00202 tuzin; Provisional 98.5 6.2E-06 1.3E-10 86.2 18.9 147 134-290 261-434 (550)
65 PF13855 LRR_8: Leucine rich r 98.5 7.7E-08 1.7E-12 73.9 3.9 58 529-587 2-60 (61)
66 PF05496 RuvB_N: Holliday junc 98.5 2E-06 4.4E-11 82.4 13.8 154 135-318 24-217 (233)
67 COG4886 Leucine-rich repeat (L 98.5 7.2E-08 1.6E-12 105.9 4.8 176 478-677 114-290 (394)
68 PRK14961 DNA polymerase III su 98.5 2.7E-06 5.9E-11 91.4 15.9 165 135-318 16-216 (363)
69 KOG2120 SCF ubiquitin ligase, 98.5 1.2E-08 2.5E-13 99.3 -2.1 207 505-781 186-397 (419)
70 cd01128 rho_factor Transcripti 98.5 2.8E-07 6.2E-12 92.1 7.7 90 154-245 14-114 (249)
71 KOG1909 Ran GTPase-activating 98.5 5.8E-08 1.3E-12 97.0 2.6 244 477-748 27-309 (382)
72 PRK12323 DNA polymerase III su 98.5 2.6E-06 5.6E-11 94.3 15.6 166 135-319 16-222 (700)
73 cd00009 AAA The AAA+ (ATPases 98.5 8.1E-07 1.8E-11 82.5 10.1 120 138-270 1-129 (151)
74 PRK00440 rfc replication facto 98.5 4.1E-06 8.9E-11 89.2 16.5 166 135-319 17-200 (319)
75 KOG1909 Ran GTPase-activating 98.4 3.1E-08 6.7E-13 98.9 -0.3 257 499-783 25-310 (382)
76 PRK14960 DNA polymerase III su 98.4 4.1E-06 8.9E-11 93.0 16.0 166 135-319 15-216 (702)
77 PRK08084 DNA replication initi 98.4 1.9E-06 4.2E-11 86.4 12.3 152 136-316 24-203 (235)
78 PRK14956 DNA polymerase III su 98.4 1.8E-06 3.9E-11 93.2 12.1 175 135-316 18-216 (484)
79 PRK14963 DNA polymerase III su 98.4 4.7E-06 1E-10 92.4 15.7 179 135-319 14-214 (504)
80 PRK06645 DNA polymerase III su 98.4 4.9E-06 1.1E-10 91.8 15.5 164 135-317 21-224 (507)
81 PRK14957 DNA polymerase III su 98.4 4.3E-06 9.4E-11 92.8 14.8 169 135-322 16-221 (546)
82 PRK14962 DNA polymerase III su 98.4 4.9E-06 1.1E-10 91.5 14.9 170 135-323 14-220 (472)
83 PF13401 AAA_22: AAA domain; P 98.4 5.8E-07 1.3E-11 81.6 6.2 114 155-269 3-124 (131)
84 PRK09087 hypothetical protein; 98.4 4.4E-06 9.5E-11 82.9 12.9 128 155-320 43-193 (226)
85 PRK09376 rho transcription ter 98.4 9.7E-07 2.1E-11 91.8 8.2 89 155-245 168-267 (416)
86 PRK13341 recombination factor 98.4 2.4E-06 5.1E-11 98.5 12.1 156 136-316 29-211 (725)
87 PRK05642 DNA replication initi 98.4 4.6E-06 9.9E-11 83.6 12.6 132 156-316 45-202 (234)
88 PRK07994 DNA polymerase III su 98.3 8.1E-06 1.8E-10 92.1 15.1 166 135-319 16-217 (647)
89 PRK14964 DNA polymerase III su 98.3 1.1E-05 2.5E-10 88.2 15.4 165 135-317 13-212 (491)
90 PRK08691 DNA polymerase III su 98.3 1.4E-05 3E-10 89.8 16.0 165 135-318 16-216 (709)
91 PRK07471 DNA polymerase III su 98.3 2.8E-06 6E-11 90.4 10.0 176 135-323 19-239 (365)
92 PRK07940 DNA polymerase III su 98.3 1.7E-05 3.8E-10 85.1 16.0 164 135-322 5-213 (394)
93 TIGR00678 holB DNA polymerase 98.3 2.3E-05 4.9E-10 76.1 15.1 146 146-317 3-186 (188)
94 PRK14958 DNA polymerase III su 98.3 1.4E-05 3.1E-10 88.8 15.1 165 135-318 16-216 (509)
95 PRK14955 DNA polymerase III su 98.3 1E-05 2.2E-10 88.0 13.4 179 135-318 16-224 (397)
96 TIGR02397 dnaX_nterm DNA polym 98.3 2.3E-05 5E-10 84.7 16.2 168 135-321 14-217 (355)
97 KOG0531 Protein phosphatase 1, 98.2 1.6E-07 3.4E-12 103.4 -0.8 130 479-629 71-202 (414)
98 PF13191 AAA_16: AAA ATPase do 98.2 2.6E-06 5.7E-11 82.6 7.9 44 137-180 2-48 (185)
99 PRK14951 DNA polymerase III su 98.2 2.2E-05 4.7E-10 88.5 15.9 167 135-319 16-222 (618)
100 PRK05896 DNA polymerase III su 98.2 1.7E-05 3.6E-10 88.3 14.7 168 135-322 16-221 (605)
101 PF00308 Bac_DnaA: Bacterial d 98.2 7.2E-06 1.6E-10 81.1 10.8 143 156-316 34-202 (219)
102 KOG2227 Pre-initiation complex 98.2 6.4E-05 1.4E-09 78.7 16.9 158 134-292 149-340 (529)
103 COG3903 Predicted ATPase [Gene 98.2 1.2E-06 2.7E-11 90.4 4.3 279 155-447 13-313 (414)
104 KOG4341 F-box protein containi 98.2 8.3E-08 1.8E-12 98.0 -4.3 271 480-781 138-436 (483)
105 PRK14969 DNA polymerase III su 98.2 3.9E-05 8.4E-10 86.1 16.1 165 135-317 16-215 (527)
106 PRK08903 DnaA regulatory inact 98.2 1.6E-05 3.5E-10 79.8 11.8 43 138-180 22-66 (227)
107 PRK09112 DNA polymerase III su 98.2 4E-05 8.6E-10 81.2 15.0 180 135-323 23-241 (351)
108 PRK09111 DNA polymerase III su 98.1 3.7E-05 8E-10 86.9 15.0 165 135-319 24-230 (598)
109 PRK14959 DNA polymerase III su 98.1 4.4E-05 9.6E-10 85.4 15.3 170 135-323 16-222 (624)
110 TIGR00767 rho transcription te 98.1 6.2E-06 1.4E-10 86.4 8.1 90 154-245 166-266 (415)
111 TIGR01242 26Sp45 26S proteasom 98.1 2.7E-05 6E-10 84.0 13.5 158 135-316 122-328 (364)
112 KOG0531 Protein phosphatase 1, 98.1 3.5E-07 7.5E-12 100.7 -1.4 110 501-629 69-178 (414)
113 PRK14970 DNA polymerase III su 98.1 5.2E-05 1.1E-09 82.2 15.5 165 135-317 17-204 (367)
114 PRK14971 DNA polymerase III su 98.1 4E-05 8.6E-10 87.3 15.0 164 135-317 17-217 (614)
115 COG2255 RuvB Holliday junction 98.1 0.00045 9.7E-09 67.9 19.7 153 135-319 26-220 (332)
116 PRK14952 DNA polymerase III su 98.1 7.1E-05 1.5E-09 84.1 16.5 168 135-322 13-220 (584)
117 KOG0989 Replication factor C, 98.1 1.4E-05 3.1E-10 79.0 9.2 168 135-315 36-223 (346)
118 PF12799 LRR_4: Leucine Rich r 98.1 4.4E-06 9.6E-11 58.5 4.2 40 528-568 1-40 (44)
119 PRK14087 dnaA chromosomal repl 98.1 2.1E-05 4.5E-10 86.5 11.6 154 156-323 141-320 (450)
120 KOG4341 F-box protein containi 98.1 2.4E-07 5.1E-12 94.8 -3.3 269 477-778 161-459 (483)
121 PF05621 TniB: Bacterial TniB 98.1 0.00012 2.5E-09 73.9 15.7 176 143-319 45-258 (302)
122 PRK14954 DNA polymerase III su 98.1 5.9E-05 1.3E-09 85.4 15.1 182 135-320 16-227 (620)
123 PRK07764 DNA polymerase III su 98.1 7.8E-05 1.7E-09 87.3 16.0 165 135-318 15-217 (824)
124 PRK08451 DNA polymerase III su 98.1 9.9E-05 2.1E-09 81.7 16.0 166 135-319 14-215 (535)
125 PRK11331 5-methylcytosine-spec 98.1 2.3E-05 5.1E-10 83.7 10.7 106 135-245 175-283 (459)
126 PRK06620 hypothetical protein; 98.0 1.1E-05 2.5E-10 79.3 7.7 117 157-314 45-181 (214)
127 PRK03992 proteasome-activating 98.0 9E-05 2E-09 80.3 15.2 158 135-316 131-337 (389)
128 KOG1859 Leucine-rich repeat pr 98.0 1.8E-07 3.9E-12 101.6 -5.7 104 479-589 186-292 (1096)
129 PRK14950 DNA polymerase III su 98.0 0.0001 2.3E-09 84.2 15.9 174 135-319 16-218 (585)
130 TIGR02881 spore_V_K stage V sp 98.0 5E-05 1.1E-09 77.8 11.7 45 136-180 7-66 (261)
131 CHL00181 cbbX CbbX; Provisiona 98.0 0.0001 2.2E-09 76.1 13.9 141 136-291 24-210 (287)
132 KOG2120 SCF ubiquitin ligase, 98.0 7.3E-07 1.6E-11 87.1 -2.1 134 480-623 185-323 (419)
133 PRK06305 DNA polymerase III su 98.0 0.00021 4.5E-09 78.7 16.7 164 135-317 17-217 (451)
134 KOG2543 Origin recognition com 97.9 0.00013 2.7E-09 74.6 13.0 151 134-290 5-193 (438)
135 PRK14088 dnaA chromosomal repl 97.9 7.3E-05 1.6E-09 82.2 12.3 162 137-316 108-299 (440)
136 TIGR03345 VI_ClpV1 type VI sec 97.9 7.9E-05 1.7E-09 88.4 13.2 168 135-314 187-388 (852)
137 PF14516 AAA_35: AAA-like doma 97.9 0.001 2.2E-08 70.5 19.9 178 135-323 11-240 (331)
138 PRK14953 DNA polymerase III su 97.9 0.00032 6.9E-09 77.8 16.7 166 135-319 16-217 (486)
139 PRK15386 type III secretion pr 97.9 3.9E-05 8.4E-10 81.0 9.0 74 500-586 48-122 (426)
140 PHA02544 44 clamp loader, smal 97.9 0.00012 2.6E-09 77.6 12.9 115 135-270 21-140 (316)
141 PRK06647 DNA polymerase III su 97.9 0.00034 7.3E-09 78.9 16.8 165 135-319 16-217 (563)
142 PF12799 LRR_4: Leucine Rich r 97.9 1.5E-05 3.3E-10 55.8 3.7 40 504-544 1-40 (44)
143 PRK07133 DNA polymerase III su 97.9 0.00029 6.4E-09 80.2 16.0 168 135-322 18-220 (725)
144 PRK14948 DNA polymerase III su 97.9 0.00031 6.7E-09 80.1 16.3 175 135-319 16-219 (620)
145 KOG4579 Leucine-rich repeat (L 97.9 1.2E-06 2.7E-11 75.6 -2.4 90 479-570 52-141 (177)
146 TIGR02880 cbbX_cfxQ probable R 97.9 0.00018 4E-09 74.2 13.0 141 136-291 23-209 (284)
147 COG0593 DnaA ATPase involved i 97.9 0.00019 4.2E-09 76.0 13.3 244 155-448 112-390 (408)
148 KOG1859 Leucine-rich repeat pr 97.9 5.6E-07 1.2E-11 97.9 -5.7 99 461-562 190-290 (1096)
149 PRK12422 chromosomal replicati 97.8 0.00039 8.5E-09 76.2 16.0 140 156-315 141-306 (445)
150 TIGR00362 DnaA chromosomal rep 97.8 0.00016 3.4E-09 79.4 12.9 144 156-317 136-305 (405)
151 PRK14086 dnaA chromosomal repl 97.8 0.00043 9.4E-09 77.3 16.1 142 157-316 315-482 (617)
152 PRK00149 dnaA chromosomal repl 97.8 0.00012 2.6E-09 81.3 12.0 144 156-317 148-317 (450)
153 PTZ00454 26S protease regulato 97.8 0.00026 5.7E-09 76.3 14.0 159 135-316 145-351 (398)
154 KOG2982 Uncharacterized conser 97.8 3E-06 6.4E-11 82.9 -0.9 20 732-751 244-263 (418)
155 PRK14965 DNA polymerase III su 97.8 0.00034 7.4E-09 79.6 15.0 167 135-321 16-220 (576)
156 PTZ00361 26 proteosome regulat 97.8 0.00016 3.4E-09 78.5 11.3 139 136-293 184-370 (438)
157 CHL00095 clpC Clp protease ATP 97.8 0.00013 2.7E-09 87.1 11.6 142 136-289 180-353 (821)
158 TIGR03689 pup_AAA proteasome A 97.8 0.00018 4E-09 79.1 11.8 147 136-291 183-379 (512)
159 TIGR02639 ClpA ATP-dependent C 97.8 0.00014 3E-09 85.7 11.6 142 136-290 183-358 (731)
160 KOG2982 Uncharacterized conser 97.7 1.9E-05 4.1E-10 77.4 2.9 83 477-562 68-157 (418)
161 PRK08116 hypothetical protein; 97.7 5.8E-05 1.2E-09 77.1 6.6 100 157-270 115-220 (268)
162 PRK07399 DNA polymerase III su 97.7 0.0016 3.5E-08 68.0 17.4 179 135-321 4-220 (314)
163 PRK05563 DNA polymerase III su 97.7 0.0011 2.3E-08 75.2 16.9 159 135-317 16-215 (559)
164 KOG3665 ZYG-1-like serine/thre 97.7 2.4E-05 5.3E-10 89.8 3.5 84 477-562 145-231 (699)
165 PF05673 DUF815: Protein of un 97.7 0.00076 1.6E-08 65.9 13.1 46 135-180 27-76 (249)
166 PRK11034 clpA ATP-dependent Cl 97.7 0.00021 4.7E-09 83.0 11.1 144 136-290 187-362 (758)
167 COG1373 Predicted ATPase (AAA+ 97.7 0.00044 9.5E-09 74.9 12.5 154 139-322 21-192 (398)
168 PRK05707 DNA polymerase III su 97.6 0.0014 3.1E-08 68.8 15.8 144 156-323 22-204 (328)
169 COG3267 ExeA Type II secretory 97.6 0.0026 5.7E-08 61.9 16.0 166 153-323 48-246 (269)
170 smart00382 AAA ATPases associa 97.6 0.00023 5.1E-09 65.2 8.9 89 156-248 2-92 (148)
171 PRK10865 protein disaggregatio 97.6 0.00061 1.3E-08 81.2 14.2 45 136-180 179-223 (857)
172 TIGR01241 FtsH_fam ATP-depende 97.6 0.0012 2.5E-08 74.4 14.8 158 135-315 55-259 (495)
173 KOG4579 Leucine-rich repeat (L 97.5 2E-05 4.2E-10 68.4 0.2 99 436-547 42-142 (177)
174 TIGR03346 chaperone_ClpB ATP-d 97.5 0.00031 6.8E-09 84.0 10.3 141 136-290 174-349 (852)
175 KOG3665 ZYG-1-like serine/thre 97.5 5.4E-05 1.2E-09 87.0 3.1 137 480-625 122-262 (699)
176 PRK15386 type III secretion pr 97.5 0.00016 3.4E-09 76.5 6.0 76 461-547 55-134 (426)
177 PRK08118 topology modulation p 97.5 7.2E-05 1.6E-09 70.6 3.1 36 157-192 2-37 (167)
178 PRK06835 DNA replication prote 97.5 0.0028 6.1E-08 66.4 15.0 99 156-269 183-287 (329)
179 KOG1644 U2-associated snRNP A' 97.5 0.00012 2.5E-09 68.2 4.1 106 480-587 42-151 (233)
180 KOG1514 Origin recognition com 97.4 0.0033 7.2E-08 69.6 15.6 132 135-268 396-546 (767)
181 PRK08058 DNA polymerase III su 97.4 0.0027 5.9E-08 67.2 14.9 133 136-288 6-180 (329)
182 PRK08769 DNA polymerase III su 97.4 0.0044 9.6E-08 64.5 15.9 162 141-323 10-209 (319)
183 PRK10536 hypothetical protein; 97.4 0.0018 3.9E-08 64.2 11.9 130 136-269 56-211 (262)
184 PHA00729 NTP-binding motif con 97.4 0.00072 1.6E-08 65.9 9.0 35 146-180 7-41 (226)
185 KOG1644 U2-associated snRNP A' 97.4 0.00022 4.8E-09 66.4 5.2 107 503-623 41-150 (233)
186 PRK12377 putative replication 97.4 0.00055 1.2E-08 68.6 8.2 99 155-269 100-204 (248)
187 TIGR00763 lon ATP-dependent pr 97.4 0.013 2.7E-07 69.8 20.7 46 135-180 320-371 (775)
188 CHL00176 ftsH cell division pr 97.4 0.0018 4E-08 74.0 13.0 157 135-314 183-386 (638)
189 KOG0991 Replication factor C, 97.4 0.00043 9.3E-09 65.7 6.5 97 135-247 27-126 (333)
190 COG5238 RNA1 Ran GTPase-activa 97.3 0.00012 2.5E-09 71.1 2.6 44 736-783 271-315 (388)
191 PF04665 Pox_A32: Poxvirus A32 97.3 0.00061 1.3E-08 67.2 7.5 36 157-195 14-49 (241)
192 TIGR00602 rad24 checkpoint pro 97.3 0.00067 1.5E-08 76.9 8.6 46 135-180 84-134 (637)
193 PRK06921 hypothetical protein; 97.3 0.00063 1.4E-08 69.4 7.5 97 155-269 116-223 (266)
194 PF00004 AAA: ATPase family as 97.2 0.00057 1.2E-08 61.9 5.5 22 159-180 1-22 (132)
195 COG1222 RPT1 ATP-dependent 26S 97.2 0.013 2.7E-07 60.0 15.3 182 137-342 153-394 (406)
196 KOG0730 AAA+-type ATPase [Post 97.2 0.007 1.5E-07 66.7 14.0 152 136-306 435-631 (693)
197 PF13177 DNA_pol3_delta2: DNA 97.1 0.0028 6E-08 59.5 9.7 117 139-270 1-141 (162)
198 COG0466 Lon ATP-dependent Lon 97.1 0.003 6.5E-08 70.2 11.1 143 137-290 325-508 (782)
199 PRK07261 topology modulation p 97.1 0.0013 2.7E-08 62.5 7.3 67 158-245 2-68 (171)
200 KOG0733 Nuclear AAA ATPase (VC 97.1 0.0087 1.9E-07 65.1 14.0 91 136-245 191-293 (802)
201 PRK07952 DNA replication prote 97.1 0.0022 4.7E-08 64.2 9.1 112 143-269 84-203 (244)
202 PRK12608 transcription termina 97.1 0.0028 6E-08 66.5 10.0 99 144-244 120-230 (380)
203 TIGR02639 ClpA ATP-dependent C 97.1 0.0029 6.2E-08 74.7 11.5 46 135-180 454-508 (731)
204 KOG2123 Uncharacterized conser 97.1 3.7E-05 8E-10 74.7 -3.6 101 478-582 17-123 (388)
205 PRK08181 transposase; Validate 97.1 0.00097 2.1E-08 67.7 6.3 98 156-270 106-208 (269)
206 KOG2739 Leucine-rich acidic nu 97.1 0.0003 6.4E-09 68.6 2.3 85 502-590 41-130 (260)
207 PRK10787 DNA-binding ATP-depen 97.0 0.011 2.4E-07 69.6 15.3 47 134-180 321-373 (784)
208 KOG2739 Leucine-rich acidic nu 97.0 0.00029 6.4E-09 68.6 1.9 107 477-586 40-153 (260)
209 PRK10865 protein disaggregatio 97.0 0.029 6.4E-07 67.1 18.9 46 135-180 568-622 (857)
210 PF02562 PhoH: PhoH-like prote 97.0 0.00083 1.8E-08 64.7 4.7 127 140-270 5-155 (205)
211 PRK06871 DNA polymerase III su 97.0 0.025 5.5E-07 59.0 16.0 162 142-319 9-200 (325)
212 TIGR01243 CDC48 AAA family ATP 97.0 0.0052 1.1E-07 72.8 12.4 45 136-180 179-236 (733)
213 PF00448 SRP54: SRP54-type pro 97.0 0.0024 5.3E-08 61.8 7.9 85 156-243 1-92 (196)
214 COG0542 clpA ATP-binding subun 97.0 0.02 4.2E-07 65.8 16.1 104 135-245 491-604 (786)
215 TIGR01243 CDC48 AAA family ATP 97.0 0.0082 1.8E-07 71.2 13.6 158 136-316 454-657 (733)
216 PF10443 RNA12: RNA12 protein; 96.9 0.036 7.8E-07 58.9 16.5 184 140-330 1-288 (431)
217 TIGR02640 gas_vesic_GvpN gas v 96.9 0.011 2.3E-07 60.6 12.4 55 143-205 10-64 (262)
218 COG2812 DnaX DNA polymerase II 96.9 0.0046 1E-07 67.9 10.2 170 135-316 16-214 (515)
219 PRK06526 transposase; Provisio 96.9 0.0011 2.4E-08 67.0 4.9 98 155-270 97-200 (254)
220 TIGR03345 VI_ClpV1 type VI sec 96.9 0.0037 8E-08 74.5 10.0 47 134-180 565-620 (852)
221 CHL00195 ycf46 Ycf46; Provisio 96.9 0.0042 9E-08 68.7 9.7 139 135-292 228-407 (489)
222 PF13207 AAA_17: AAA domain; P 96.9 0.00082 1.8E-08 59.8 3.5 23 158-180 1-23 (121)
223 KOG0735 AAA+-type ATPase [Post 96.9 0.0058 1.3E-07 67.6 10.4 140 155-315 430-608 (952)
224 PRK06090 DNA polymerase III su 96.9 0.031 6.8E-07 58.2 15.4 150 142-323 10-202 (319)
225 PRK09183 transposase/IS protei 96.9 0.0019 4.2E-08 65.6 6.3 97 156-269 102-204 (259)
226 TIGR02902 spore_lonB ATP-depen 96.8 0.025 5.5E-07 63.9 15.5 45 136-180 66-110 (531)
227 KOG2228 Origin recognition com 96.8 0.0073 1.6E-07 61.1 9.6 133 135-270 24-181 (408)
228 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0017 3.7E-08 67.8 5.5 45 136-180 52-102 (361)
229 KOG0727 26S proteasome regulat 96.8 0.47 1E-05 46.1 21.2 45 136-180 156-213 (408)
230 PRK04132 replication factor C 96.8 0.017 3.6E-07 67.7 14.0 137 164-318 574-727 (846)
231 cd01133 F1-ATPase_beta F1 ATP 96.8 0.0065 1.4E-07 61.3 9.4 88 155-245 68-174 (274)
232 cd01393 recA_like RecA is a b 96.8 0.0083 1.8E-07 60.1 10.3 87 155-245 18-125 (226)
233 KOG1947 Leucine rich repeat pr 96.8 0.0004 8.6E-09 78.7 0.6 212 478-714 186-414 (482)
234 PRK00771 signal recognition pa 96.8 0.062 1.3E-06 58.7 17.2 86 155-244 94-185 (437)
235 COG5238 RNA1 Ran GTPase-activa 96.8 0.0027 5.9E-08 61.9 6.0 83 479-562 29-131 (388)
236 PRK07993 DNA polymerase III su 96.7 0.05 1.1E-06 57.5 16.0 154 142-321 9-203 (334)
237 TIGR02237 recomb_radB DNA repa 96.7 0.0064 1.4E-07 60.1 8.8 48 155-206 11-58 (209)
238 PRK06964 DNA polymerase III su 96.7 0.063 1.4E-06 56.6 16.4 80 233-323 131-226 (342)
239 PRK09361 radB DNA repair and r 96.7 0.009 1.9E-07 59.8 9.8 85 155-244 22-117 (225)
240 TIGR03346 chaperone_ClpB ATP-d 96.7 0.0037 8E-08 75.0 8.0 60 135-197 565-633 (852)
241 PF01695 IstB_IS21: IstB-like 96.7 0.00099 2.1E-08 63.5 2.5 97 155-269 46-148 (178)
242 PRK12727 flagellar biosynthesi 96.7 0.059 1.3E-06 59.3 16.2 87 155-244 349-438 (559)
243 PRK08939 primosomal protein Dn 96.7 0.0069 1.5E-07 63.1 8.8 114 139-269 135-259 (306)
244 PRK11034 clpA ATP-dependent Cl 96.7 0.0074 1.6E-07 70.5 10.0 46 135-180 458-512 (758)
245 COG0470 HolB ATPase involved i 96.7 0.015 3.2E-07 61.9 11.7 119 137-270 3-148 (325)
246 COG2607 Predicted ATPase (AAA+ 96.6 0.028 6E-07 54.3 11.8 46 135-180 60-109 (287)
247 COG1223 Predicted ATPase (AAA+ 96.6 0.014 3.1E-07 56.7 9.9 157 135-315 121-318 (368)
248 PLN00020 ribulose bisphosphate 96.6 0.0027 5.8E-08 65.8 5.3 27 154-180 146-172 (413)
249 PRK06696 uridine kinase; Valid 96.6 0.0032 6.8E-08 62.8 5.5 42 139-180 2-46 (223)
250 cd00983 recA RecA is a bacter 96.6 0.0066 1.4E-07 63.1 7.8 82 155-244 54-143 (325)
251 KOG0734 AAA+-type ATPase conta 96.6 0.011 2.5E-07 63.1 9.5 45 136-180 305-361 (752)
252 COG0542 clpA ATP-binding subun 96.6 0.0041 8.9E-08 71.1 6.7 140 136-290 171-346 (786)
253 KOG0733 Nuclear AAA ATPase (VC 96.6 0.022 4.7E-07 62.2 11.6 141 155-316 544-718 (802)
254 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.011 2.3E-07 59.7 9.1 88 155-244 18-125 (235)
255 PRK10867 signal recognition pa 96.5 0.1 2.2E-06 56.8 17.0 88 154-244 98-193 (433)
256 cd01120 RecA-like_NTPases RecA 96.5 0.013 2.7E-07 55.2 9.1 40 158-200 1-40 (165)
257 TIGR02012 tigrfam_recA protein 96.5 0.0098 2.1E-07 61.8 8.3 83 155-245 54-144 (321)
258 PF08423 Rad51: Rad51; InterP 96.4 0.014 2.9E-07 59.3 9.1 89 155-244 37-143 (256)
259 PRK04296 thymidine kinase; Pro 96.4 0.0033 7.1E-08 60.8 4.4 107 157-270 3-115 (190)
260 COG1484 DnaC DNA replication p 96.4 0.015 3.2E-07 58.9 9.3 75 155-245 104-178 (254)
261 KOG0744 AAA+-type ATPase [Post 96.4 0.011 2.4E-07 59.4 7.9 82 156-245 177-261 (423)
262 PF14532 Sigma54_activ_2: Sigm 96.4 0.0034 7.5E-08 57.2 4.2 43 138-180 1-45 (138)
263 TIGR01425 SRP54_euk signal rec 96.4 0.15 3.3E-06 55.2 17.2 26 155-180 99-124 (429)
264 PRK05541 adenylylsulfate kinas 96.4 0.0069 1.5E-07 58.0 6.3 36 155-193 6-41 (176)
265 COG1875 NYN ribonuclease and A 96.4 0.0087 1.9E-07 61.2 7.0 129 139-269 228-386 (436)
266 PRK08699 DNA polymerase III su 96.3 0.09 2E-06 55.3 14.8 27 154-180 19-45 (325)
267 KOG1969 DNA replication checkp 96.3 0.0089 1.9E-07 66.5 7.3 73 155-246 325-399 (877)
268 cd01394 radB RadB. The archaea 96.3 0.035 7.6E-07 55.2 11.2 43 155-200 18-60 (218)
269 KOG1947 Leucine rich repeat pr 96.3 0.0021 4.5E-08 72.8 2.6 114 500-625 184-307 (482)
270 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.03 6.5E-07 51.7 9.5 110 157-270 3-137 (159)
271 PRK09354 recA recombinase A; P 96.3 0.015 3.3E-07 60.9 8.5 83 155-245 59-149 (349)
272 PRK08233 hypothetical protein; 96.3 0.014 2.9E-07 56.2 7.7 25 156-180 3-27 (182)
273 KOG0741 AAA+-type ATPase [Post 96.3 0.035 7.6E-07 59.5 11.0 135 155-312 537-704 (744)
274 PRK15455 PrkA family serine pr 96.3 0.0052 1.1E-07 67.6 5.0 45 136-180 77-127 (644)
275 KOG2004 Mitochondrial ATP-depe 96.2 0.11 2.4E-06 58.0 15.0 96 136-245 412-516 (906)
276 KOG2035 Replication factor C, 96.2 0.051 1.1E-06 53.6 11.0 195 136-343 14-261 (351)
277 cd01131 PilT Pilus retraction 96.2 0.0053 1.1E-07 59.9 4.4 105 157-269 2-107 (198)
278 PRK06547 hypothetical protein; 96.2 0.0075 1.6E-07 57.0 5.2 34 147-180 6-39 (172)
279 KOG0728 26S proteasome regulat 96.2 0.2 4.4E-06 48.5 14.5 151 137-310 148-351 (404)
280 PRK10733 hflB ATP-dependent me 96.2 0.053 1.1E-06 62.9 13.0 138 136-292 153-337 (644)
281 COG1102 Cmk Cytidylate kinase 96.2 0.014 2.9E-07 52.8 6.3 44 158-215 2-45 (179)
282 KOG0731 AAA+-type ATPase conta 96.1 0.055 1.2E-06 61.8 12.5 162 135-319 311-521 (774)
283 CHL00095 clpC Clp protease ATP 96.1 0.017 3.6E-07 69.3 9.1 46 135-180 509-563 (821)
284 TIGR03499 FlhF flagellar biosy 96.1 0.024 5.1E-07 58.6 9.1 86 155-243 193-281 (282)
285 PF00560 LRR_1: Leucine Rich R 96.1 0.0024 5.2E-08 37.1 1.0 19 530-548 2-20 (22)
286 TIGR02238 recomb_DMC1 meiotic 96.1 0.032 7E-07 58.3 10.1 89 155-244 95-201 (313)
287 KOG0738 AAA+-type ATPase [Post 96.1 0.041 8.9E-07 56.8 10.3 45 136-180 213-269 (491)
288 PLN03187 meiotic recombination 96.1 0.033 7.1E-07 58.7 9.9 89 155-244 125-231 (344)
289 PF00006 ATP-synt_ab: ATP synt 96.1 0.017 3.8E-07 56.5 7.3 82 156-244 15-115 (215)
290 TIGR01359 UMP_CMP_kin_fam UMP- 96.1 0.022 4.8E-07 54.8 8.0 23 158-180 1-23 (183)
291 PRK05022 anaerobic nitric oxid 96.1 0.042 9.1E-07 62.1 11.4 61 135-198 187-249 (509)
292 COG1618 Predicted nucleotide k 96.1 0.0068 1.5E-07 54.6 3.9 25 156-180 5-29 (179)
293 PRK15429 formate hydrogenlyase 96.0 0.067 1.5E-06 63.0 13.5 45 136-180 377-423 (686)
294 cd03214 ABC_Iron-Siderophores_ 96.0 0.017 3.6E-07 55.5 6.8 111 155-270 24-157 (180)
295 PRK11889 flhF flagellar biosyn 96.0 0.035 7.6E-07 58.6 9.3 86 155-244 240-330 (436)
296 cd03115 SRP The signal recogni 96.0 0.025 5.5E-07 53.9 7.8 84 158-244 2-92 (173)
297 KOG0652 26S proteasome regulat 95.9 0.21 4.5E-06 48.7 13.5 53 128-180 162-229 (424)
298 COG4608 AppF ABC-type oligopep 95.9 0.037 8.1E-07 55.0 8.7 88 155-246 38-139 (268)
299 PF13238 AAA_18: AAA domain; P 95.9 0.0063 1.4E-07 54.6 3.2 22 159-180 1-22 (129)
300 PRK11608 pspF phage shock prot 95.9 0.017 3.6E-07 61.2 6.7 46 135-180 6-53 (326)
301 KOG0736 Peroxisome assembly fa 95.9 0.055 1.2E-06 60.8 10.7 92 135-245 672-775 (953)
302 COG0541 Ffh Signal recognition 95.9 0.62 1.3E-05 49.6 17.8 59 154-216 98-158 (451)
303 PRK09270 nucleoside triphospha 95.9 0.035 7.6E-07 55.6 8.7 27 154-180 31-57 (229)
304 PRK14722 flhF flagellar biosyn 95.9 0.029 6.2E-07 59.6 8.2 87 155-244 136-225 (374)
305 PLN03186 DNA repair protein RA 95.9 0.072 1.6E-06 56.2 11.2 59 155-214 122-183 (342)
306 PRK04301 radA DNA repair and r 95.8 0.04 8.7E-07 58.2 9.5 57 155-213 101-161 (317)
307 TIGR02858 spore_III_AA stage I 95.8 0.042 9.1E-07 56.0 9.2 120 145-270 99-228 (270)
308 KOG2123 Uncharacterized conser 95.8 0.00077 1.7E-08 65.9 -3.2 106 503-620 18-124 (388)
309 TIGR00959 ffh signal recogniti 95.8 0.035 7.6E-07 60.3 9.0 89 154-244 97-192 (428)
310 PRK14974 cell division protein 95.8 0.064 1.4E-06 56.4 10.7 87 155-245 139-233 (336)
311 cd03247 ABCC_cytochrome_bd The 95.8 0.026 5.6E-07 54.1 7.3 26 155-180 27-52 (178)
312 cd02019 NK Nucleoside/nucleoti 95.8 0.0076 1.6E-07 47.2 2.9 23 158-180 1-23 (69)
313 PRK07667 uridine kinase; Provi 95.8 0.012 2.5E-07 57.2 4.8 37 144-180 3-41 (193)
314 PF13306 LRR_5: Leucine rich r 95.8 0.024 5.2E-07 50.8 6.6 103 477-585 9-112 (129)
315 TIGR00554 panK_bact pantothena 95.8 0.035 7.6E-07 57.0 8.4 80 154-234 60-141 (290)
316 PF00485 PRK: Phosphoribulokin 95.8 0.0075 1.6E-07 58.7 3.4 78 158-238 1-87 (194)
317 cd01135 V_A-ATPase_B V/A-type 95.8 0.062 1.3E-06 54.2 9.8 91 155-245 68-177 (276)
318 TIGR01817 nifA Nif-specific re 95.7 0.12 2.7E-06 59.0 13.6 47 134-180 195-243 (534)
319 cd03238 ABC_UvrA The excision 95.7 0.024 5.3E-07 53.8 6.6 106 155-270 20-148 (176)
320 COG1121 ZnuC ABC-type Mn/Zn tr 95.7 0.025 5.5E-07 56.1 6.9 115 156-270 30-198 (254)
321 PRK05800 cobU adenosylcobinami 95.7 0.0039 8.5E-08 58.8 1.1 23 158-180 3-25 (170)
322 TIGR00390 hslU ATP-dependent p 95.7 0.021 4.5E-07 60.8 6.5 46 135-180 12-71 (441)
323 PRK12723 flagellar biosynthesi 95.7 0.055 1.2E-06 58.0 9.8 87 155-244 173-264 (388)
324 PF00154 RecA: recA bacterial 95.7 0.15 3.3E-06 52.9 12.6 92 147-246 41-143 (322)
325 TIGR00064 ftsY signal recognit 95.7 0.054 1.2E-06 55.5 9.3 87 154-244 70-164 (272)
326 TIGR02974 phageshock_pspF psp 95.7 0.12 2.7E-06 54.6 12.3 44 137-180 1-46 (329)
327 PTZ00035 Rad51 protein; Provis 95.7 0.13 2.9E-06 54.4 12.4 88 155-244 117-223 (337)
328 cd03216 ABC_Carb_Monos_I This 95.7 0.015 3.3E-07 54.7 4.9 109 155-270 25-141 (163)
329 PTZ00301 uridine kinase; Provi 95.7 0.01 2.2E-07 58.1 3.7 25 156-180 3-27 (210)
330 PRK05480 uridine/cytidine kina 95.7 0.01 2.3E-07 58.5 3.9 27 154-180 4-30 (209)
331 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.6 0.036 7.8E-07 50.9 7.1 98 155-270 25-126 (144)
332 TIGR02239 recomb_RAD51 DNA rep 95.6 0.095 2.1E-06 55.0 11.1 58 155-213 95-155 (316)
333 COG0563 Adk Adenylate kinase a 95.6 0.023 5.1E-07 53.9 6.0 23 158-180 2-24 (178)
334 TIGR03877 thermo_KaiC_1 KaiC d 95.6 0.092 2E-06 52.9 10.6 48 155-207 20-67 (237)
335 COG0464 SpoVK ATPases of the A 95.6 0.16 3.5E-06 57.4 13.8 138 136-292 243-425 (494)
336 PF13671 AAA_33: AAA domain; P 95.6 0.011 2.4E-07 54.3 3.5 23 158-180 1-23 (143)
337 TIGR02236 recomb_radA DNA repa 95.6 0.059 1.3E-06 56.8 9.4 58 155-213 94-154 (310)
338 PRK06002 fliI flagellum-specif 95.6 0.067 1.5E-06 58.0 9.8 87 155-245 164-265 (450)
339 cd01121 Sms Sms (bacterial rad 95.6 0.077 1.7E-06 56.8 10.2 81 155-244 81-168 (372)
340 KOG0743 AAA+-type ATPase [Post 95.6 0.96 2.1E-05 48.4 17.9 24 157-180 236-259 (457)
341 TIGR00708 cobA cob(I)alamin ad 95.5 0.066 1.4E-06 50.1 8.4 113 155-270 4-139 (173)
342 PRK08972 fliI flagellum-specif 95.5 0.073 1.6E-06 57.5 9.9 86 155-245 161-263 (444)
343 COG1428 Deoxynucleoside kinase 95.5 0.025 5.3E-07 53.9 5.6 49 156-210 4-52 (216)
344 KOG0739 AAA+-type ATPase [Post 95.5 0.2 4.4E-06 49.9 11.9 91 135-245 133-236 (439)
345 PRK10463 hydrogenase nickel in 95.5 0.17 3.6E-06 51.7 11.8 34 147-180 95-128 (290)
346 TIGR00235 udk uridine kinase. 95.5 0.012 2.7E-07 57.8 3.7 27 154-180 4-30 (207)
347 cd03223 ABCD_peroxisomal_ALDP 95.5 0.057 1.2E-06 51.0 8.1 111 155-270 26-147 (166)
348 PRK06762 hypothetical protein; 95.5 0.013 2.8E-07 55.4 3.6 25 156-180 2-26 (166)
349 PRK12597 F0F1 ATP synthase sub 95.4 0.06 1.3E-06 58.8 9.1 89 155-245 142-248 (461)
350 TIGR01360 aden_kin_iso1 adenyl 95.4 0.013 2.8E-07 56.8 3.5 26 155-180 2-27 (188)
351 cd03222 ABC_RNaseL_inhibitor T 95.4 0.04 8.6E-07 52.4 6.7 27 154-180 23-49 (177)
352 PRK12726 flagellar biosynthesi 95.4 0.093 2E-06 55.3 9.7 87 155-244 205-295 (407)
353 cd03230 ABC_DR_subfamily_A Thi 95.4 0.04 8.6E-07 52.5 6.7 26 155-180 25-50 (173)
354 COG0572 Udk Uridine kinase [Nu 95.4 0.015 3.3E-07 56.1 3.7 26 155-180 7-32 (218)
355 cd02025 PanK Pantothenate kina 95.4 0.071 1.5E-06 52.8 8.6 23 158-180 1-23 (220)
356 PF07728 AAA_5: AAA domain (dy 95.4 0.035 7.7E-07 50.6 6.1 43 159-207 2-44 (139)
357 KOG2170 ATPase of the AAA+ sup 95.4 0.045 9.8E-07 54.7 6.9 97 135-246 82-190 (344)
358 KOG1532 GTPase XAB1, interacts 95.4 0.062 1.3E-06 52.8 7.7 26 155-180 18-43 (366)
359 COG0468 RecA RecA/RadA recombi 95.3 0.08 1.7E-06 53.8 9.0 88 155-245 59-152 (279)
360 PRK08927 fliI flagellum-specif 95.3 0.11 2.3E-06 56.4 10.4 86 155-245 157-259 (442)
361 PRK03839 putative kinase; Prov 95.3 0.014 3E-07 56.0 3.3 23 158-180 2-24 (180)
362 PRK05439 pantothenate kinase; 95.3 0.099 2.1E-06 54.2 9.5 81 154-235 84-166 (311)
363 cd01125 repA Hexameric Replica 95.3 0.11 2.3E-06 52.5 9.7 55 158-212 3-67 (239)
364 PRK09280 F0F1 ATP synthase sub 95.3 0.095 2.1E-06 57.1 9.7 89 155-245 143-249 (463)
365 PRK12724 flagellar biosynthesi 95.3 0.054 1.2E-06 58.0 7.7 25 156-180 223-247 (432)
366 PRK08149 ATP synthase SpaL; Va 95.3 0.1 2.2E-06 56.5 9.9 86 155-245 150-252 (428)
367 PF06309 Torsin: Torsin; Inte 95.2 0.031 6.7E-07 48.8 4.9 45 136-180 26-77 (127)
368 PRK07132 DNA polymerase III su 95.2 0.86 1.9E-05 47.2 16.2 157 144-323 5-186 (299)
369 PRK04040 adenylate kinase; Pro 95.2 0.017 3.7E-07 55.6 3.6 25 156-180 2-26 (188)
370 PRK13531 regulatory ATPase Rav 95.2 0.028 6.1E-07 61.2 5.5 44 135-180 20-63 (498)
371 PRK06067 flagellar accessory p 95.2 0.073 1.6E-06 53.5 8.3 48 155-207 24-71 (234)
372 PRK05201 hslU ATP-dependent pr 95.2 0.042 9.1E-07 58.6 6.6 46 135-180 15-74 (443)
373 cd03246 ABCC_Protease_Secretio 95.2 0.047 1E-06 52.0 6.5 26 155-180 27-52 (173)
374 PTZ00494 tuzin-like protein; P 95.2 1.3 2.7E-05 47.4 17.0 147 134-290 370-544 (664)
375 TIGR03878 thermo_KaiC_2 KaiC d 95.2 0.083 1.8E-06 53.9 8.7 40 155-197 35-74 (259)
376 PRK04328 hypothetical protein; 95.2 0.087 1.9E-06 53.4 8.7 41 155-198 22-62 (249)
377 PTZ00088 adenylate kinase 1; P 95.2 0.019 4.1E-07 57.0 3.8 23 158-180 8-30 (229)
378 TIGR00150 HI0065_YjeE ATPase, 95.1 0.035 7.5E-07 49.6 5.0 38 143-180 7-46 (133)
379 cd01132 F1_ATPase_alpha F1 ATP 95.1 0.096 2.1E-06 52.9 8.6 84 155-245 68-172 (274)
380 cd03228 ABCC_MRP_Like The MRP 95.1 0.056 1.2E-06 51.3 6.8 26 155-180 27-52 (171)
381 COG2884 FtsE Predicted ATPase 95.1 0.11 2.5E-06 48.4 8.3 27 154-180 26-52 (223)
382 PF00910 RNA_helicase: RNA hel 95.1 0.015 3.2E-07 50.3 2.5 22 159-180 1-22 (107)
383 cd01136 ATPase_flagellum-secre 95.1 0.15 3.2E-06 53.2 10.3 86 155-245 68-170 (326)
384 COG1066 Sms Predicted ATP-depe 95.1 0.2 4.3E-06 52.7 10.9 92 144-245 79-179 (456)
385 PRK00625 shikimate kinase; Pro 95.1 0.018 3.9E-07 54.5 3.2 23 158-180 2-24 (173)
386 TIGR01650 PD_CobS cobaltochela 95.0 0.53 1.1E-05 49.0 14.0 61 137-205 47-107 (327)
387 PRK09519 recA DNA recombinatio 95.0 0.073 1.6E-06 61.7 8.4 82 155-244 59-148 (790)
388 PRK06936 type III secretion sy 95.0 0.14 3.1E-06 55.4 10.1 86 155-245 161-263 (439)
389 COG1419 FlhF Flagellar GTP-bin 95.0 0.23 5E-06 52.6 11.2 86 155-243 202-290 (407)
390 PRK00279 adk adenylate kinase; 95.0 0.097 2.1E-06 51.8 8.3 23 158-180 2-24 (215)
391 TIGR03305 alt_F1F0_F1_bet alte 95.0 0.12 2.6E-06 56.1 9.5 89 155-245 137-243 (449)
392 PRK05922 type III secretion sy 95.0 0.15 3.3E-06 55.2 10.2 86 155-245 156-258 (434)
393 PRK13765 ATP-dependent proteas 94.9 0.046 1E-06 62.5 6.6 75 135-214 31-105 (637)
394 cd02023 UMPK Uridine monophosp 94.9 0.017 3.8E-07 56.4 2.9 23 158-180 1-23 (198)
395 PRK06217 hypothetical protein; 94.9 0.022 4.8E-07 54.8 3.5 34 158-193 3-38 (183)
396 PF07726 AAA_3: ATPase family 94.9 0.022 4.8E-07 49.9 3.1 27 159-188 2-28 (131)
397 KOG3347 Predicted nucleotide k 94.9 0.04 8.6E-07 49.0 4.6 34 156-197 7-40 (176)
398 TIGR00382 clpX endopeptidase C 94.9 0.068 1.5E-06 57.7 7.4 47 134-180 76-140 (413)
399 PF12775 AAA_7: P-loop contain 94.9 0.0093 2E-07 61.0 0.8 88 145-244 23-110 (272)
400 PRK05703 flhF flagellar biosyn 94.9 0.093 2E-06 57.4 8.6 85 156-243 221-308 (424)
401 TIGR03498 FliI_clade3 flagella 94.9 0.12 2.7E-06 55.9 9.3 86 155-245 139-241 (418)
402 COG3640 CooC CO dehydrogenase 94.9 0.044 9.5E-07 52.9 5.2 43 158-202 2-44 (255)
403 cd02024 NRK1 Nicotinamide ribo 94.9 0.019 4.1E-07 54.9 2.8 23 158-180 1-23 (187)
404 KOG0729 26S proteasome regulat 94.9 0.059 1.3E-06 52.5 6.1 45 136-180 178-235 (435)
405 PF00158 Sigma54_activat: Sigm 94.9 0.11 2.4E-06 49.0 7.9 57 137-196 1-59 (168)
406 PF01583 APS_kinase: Adenylyls 94.9 0.031 6.8E-07 51.3 4.1 36 156-194 2-37 (156)
407 PTZ00185 ATPase alpha subunit; 94.9 0.15 3.2E-06 55.7 9.7 90 155-245 188-300 (574)
408 TIGR03881 KaiC_arch_4 KaiC dom 94.9 0.15 3.2E-06 51.1 9.5 41 155-198 19-59 (229)
409 PHA02774 E1; Provisional 94.8 0.11 2.3E-06 57.6 8.6 48 144-196 421-469 (613)
410 PRK14723 flhF flagellar biosyn 94.8 0.19 4.2E-06 58.2 10.9 85 156-244 185-273 (767)
411 cd01428 ADK Adenylate kinase ( 94.8 0.1 2.2E-06 50.7 7.7 22 159-180 2-23 (194)
412 PRK11823 DNA repair protein Ra 94.7 0.19 4.1E-06 55.6 10.5 91 145-244 67-166 (446)
413 TIGR02030 BchI-ChlI magnesium 94.7 0.044 9.5E-07 57.7 5.3 46 135-180 4-49 (337)
414 TIGR01039 atpD ATP synthase, F 94.7 0.17 3.6E-06 55.0 9.7 89 155-245 142-248 (461)
415 PF13481 AAA_25: AAA domain; P 94.7 0.12 2.7E-06 50.1 8.2 43 157-199 33-82 (193)
416 PRK00131 aroK shikimate kinase 94.7 0.028 6.2E-07 53.5 3.6 25 156-180 4-28 (175)
417 TIGR00764 lon_rel lon-related 94.7 0.09 2E-06 60.3 8.2 75 135-214 18-92 (608)
418 TIGR02322 phosphon_PhnN phosph 94.7 0.026 5.7E-07 54.1 3.4 24 157-180 2-25 (179)
419 PRK14532 adenylate kinase; Pro 94.7 0.13 2.8E-06 49.7 8.2 22 159-180 3-24 (188)
420 COG0396 sufC Cysteine desulfur 94.7 0.14 3E-06 49.5 8.0 26 155-180 29-54 (251)
421 PRK14721 flhF flagellar biosyn 94.7 0.19 4.1E-06 54.5 10.1 86 155-243 190-278 (420)
422 CHL00081 chlI Mg-protoporyphyr 94.7 0.039 8.5E-07 58.1 4.8 46 135-180 17-62 (350)
423 PRK06851 hypothetical protein; 94.7 0.51 1.1E-05 50.1 13.0 55 138-198 200-254 (367)
424 PRK11388 DNA-binding transcrip 94.6 0.32 7E-06 56.9 12.9 46 135-180 325-372 (638)
425 cd02020 CMPK Cytidine monophos 94.6 0.024 5.3E-07 52.2 2.9 23 158-180 1-23 (147)
426 PF07724 AAA_2: AAA domain (Cd 94.6 0.037 8.1E-07 52.3 4.1 41 155-197 2-42 (171)
427 PRK12678 transcription termina 94.6 0.06 1.3E-06 59.3 6.0 88 155-244 415-513 (672)
428 COG1936 Predicted nucleotide k 94.6 0.026 5.6E-07 51.8 2.8 20 158-177 2-21 (180)
429 PRK07594 type III secretion sy 94.6 0.16 3.5E-06 55.0 9.3 87 154-245 153-256 (433)
430 COG1124 DppF ABC-type dipeptid 94.6 0.044 9.5E-07 53.3 4.5 26 155-180 32-57 (252)
431 KOG0473 Leucine-rich repeat pr 94.6 0.0017 3.8E-08 61.7 -4.9 85 500-587 38-122 (326)
432 PF13306 LRR_5: Leucine rich r 94.6 0.061 1.3E-06 48.2 5.3 105 469-579 22-129 (129)
433 PRK05688 fliI flagellum-specif 94.6 0.11 2.4E-06 56.5 8.0 86 155-245 167-269 (451)
434 cd01129 PulE-GspE PulE/GspE Th 94.6 0.095 2.1E-06 53.5 7.2 104 138-250 62-165 (264)
435 cd00267 ABC_ATPase ABC (ATP-bi 94.6 0.044 9.5E-07 51.2 4.5 107 156-270 25-139 (157)
436 PF03205 MobB: Molybdopterin g 94.6 0.044 9.5E-07 49.8 4.3 39 157-197 1-39 (140)
437 PF13245 AAA_19: Part of AAA d 94.6 0.082 1.8E-06 42.2 5.3 25 155-179 9-33 (76)
438 COG4133 CcmA ABC-type transpor 94.6 0.14 3E-06 47.8 7.3 25 156-180 28-52 (209)
439 cd02028 UMPK_like Uridine mono 94.6 0.026 5.6E-07 54.0 2.9 23 158-180 1-23 (179)
440 PRK08533 flagellar accessory p 94.5 0.18 3.9E-06 50.3 9.0 49 155-208 23-71 (230)
441 PF00625 Guanylate_kin: Guanyl 94.5 0.049 1.1E-06 52.4 4.8 37 156-195 2-38 (183)
442 PRK05986 cob(I)alamin adenolsy 94.5 0.14 3.1E-06 48.6 7.7 113 155-270 21-157 (191)
443 cd02021 GntK Gluconate kinase 94.5 0.027 5.9E-07 52.2 2.8 23 158-180 1-23 (150)
444 PF13504 LRR_7: Leucine rich r 94.5 0.026 5.7E-07 30.3 1.6 16 529-544 2-17 (17)
445 TIGR03574 selen_PSTK L-seryl-t 94.5 0.061 1.3E-06 54.7 5.5 23 158-180 1-23 (249)
446 cd01122 GP4d_helicase GP4d_hel 94.5 0.22 4.8E-06 51.4 9.8 53 155-211 29-81 (271)
447 PRK09099 type III secretion sy 94.5 0.2 4.3E-06 54.6 9.6 88 154-245 161-264 (441)
448 PRK13949 shikimate kinase; Pro 94.4 0.032 6.9E-07 52.8 3.2 24 157-180 2-25 (169)
449 cd00227 CPT Chloramphenicol (C 94.4 0.033 7.2E-07 53.1 3.4 24 157-180 3-26 (175)
450 cd00071 GMPK Guanosine monopho 94.4 0.034 7.4E-07 50.5 3.2 23 158-180 1-23 (137)
451 PRK10416 signal recognition pa 94.4 0.22 4.7E-06 52.2 9.6 26 155-180 113-138 (318)
452 PRK00889 adenylylsulfate kinas 94.4 0.041 9E-07 52.5 4.0 26 155-180 3-28 (175)
453 PRK07196 fliI flagellum-specif 94.4 0.14 3E-06 55.6 8.3 87 154-245 153-256 (434)
454 PRK10751 molybdopterin-guanine 94.4 0.037 8.1E-07 51.9 3.5 26 155-180 5-30 (173)
455 PF03308 ArgK: ArgK protein; 94.4 0.044 9.5E-07 54.2 4.1 63 143-206 14-78 (266)
456 PRK13947 shikimate kinase; Pro 94.4 0.032 6.9E-07 53.1 3.1 23 158-180 3-25 (171)
457 PRK10875 recD exonuclease V su 94.4 0.073 1.6E-06 60.8 6.5 55 156-210 167-221 (615)
458 PF08433 KTI12: Chromatin asso 94.4 0.057 1.2E-06 55.0 5.1 24 157-180 2-25 (270)
459 TIGR03263 guanyl_kin guanylate 94.4 0.032 6.9E-07 53.5 3.1 24 157-180 2-25 (180)
460 PF13086 AAA_11: AAA domain; P 94.4 0.11 2.3E-06 52.2 7.1 64 144-209 7-74 (236)
461 PRK14531 adenylate kinase; Pro 94.4 0.15 3.3E-06 49.0 7.8 24 157-180 3-26 (183)
462 TIGR00416 sms DNA repair prote 94.4 0.26 5.5E-06 54.6 10.4 52 144-198 80-133 (454)
463 cd03213 ABCG_EPDR ABCG transpo 94.4 0.11 2.3E-06 50.6 6.8 26 155-180 34-59 (194)
464 PRK13407 bchI magnesium chelat 94.3 0.05 1.1E-06 57.2 4.6 46 135-180 8-53 (334)
465 COG1703 ArgK Putative periplas 94.3 0.046 1E-06 54.8 4.1 62 145-207 38-101 (323)
466 PRK06793 fliI flagellum-specif 94.3 0.15 3.2E-06 55.3 8.3 88 155-246 155-258 (432)
467 PRK14530 adenylate kinase; Pro 94.3 0.035 7.6E-07 55.0 3.3 24 157-180 4-27 (215)
468 TIGR03496 FliI_clade1 flagella 94.3 0.24 5.3E-06 53.6 9.8 86 155-245 136-238 (411)
469 KOG1051 Chaperone HSP104 and r 94.3 0.25 5.4E-06 57.9 10.4 101 135-245 562-671 (898)
470 COG0467 RAD55 RecA-superfamily 94.3 0.051 1.1E-06 55.6 4.5 42 154-198 21-62 (260)
471 PF05970 PIF1: PIF1-like helic 94.3 0.091 2E-06 56.6 6.6 38 143-180 9-46 (364)
472 PRK06995 flhF flagellar biosyn 94.3 0.16 3.4E-06 55.9 8.5 85 156-244 256-344 (484)
473 TIGR00073 hypB hydrogenase acc 94.2 0.048 1.1E-06 53.6 4.1 31 150-180 16-46 (207)
474 TIGR02655 circ_KaiC circadian 94.2 0.27 5.8E-06 55.2 10.4 63 145-213 250-314 (484)
475 TIGR01351 adk adenylate kinase 94.2 0.13 2.9E-06 50.6 7.2 22 159-180 2-23 (210)
476 TIGR01041 ATP_syn_B_arch ATP s 94.1 0.17 3.7E-06 55.4 8.3 90 155-245 140-249 (458)
477 TIGR01069 mutS2 MutS2 family p 94.1 0.035 7.7E-07 65.3 3.4 25 155-179 321-345 (771)
478 PRK07721 fliI flagellum-specif 94.1 0.28 6.1E-06 53.7 9.9 88 154-245 156-259 (438)
479 cd00464 SK Shikimate kinase (S 94.1 0.041 8.8E-07 51.2 3.1 22 159-180 2-23 (154)
480 COG0003 ArsA Predicted ATPase 94.1 0.08 1.7E-06 55.1 5.5 49 156-207 2-50 (322)
481 TIGR01040 V-ATPase_V1_B V-type 94.1 0.22 4.8E-06 53.9 8.9 90 155-245 140-258 (466)
482 PRK00300 gmk guanylate kinase; 94.1 0.041 9E-07 54.1 3.3 26 155-180 4-29 (205)
483 PRK12339 2-phosphoglycerate ki 94.1 0.05 1.1E-06 52.7 3.7 25 156-180 3-27 (197)
484 PRK05057 aroK shikimate kinase 94.1 0.047 1E-06 51.8 3.5 25 156-180 4-28 (172)
485 PRK10078 ribose 1,5-bisphospho 94.1 0.041 9E-07 53.1 3.2 24 157-180 3-26 (186)
486 COG0465 HflB ATP-dependent Zn 94.1 0.43 9.3E-06 53.6 11.3 46 135-180 150-207 (596)
487 TIGR01420 pilT_fam pilus retra 94.0 0.069 1.5E-06 57.0 5.1 108 154-269 120-228 (343)
488 PF08298 AAA_PrkA: PrkA AAA do 94.0 0.088 1.9E-06 54.7 5.6 46 135-180 61-112 (358)
489 cd01134 V_A-ATPase_A V/A-type 94.0 0.5 1.1E-05 49.3 11.0 49 155-208 156-205 (369)
490 PF08477 Miro: Miro-like prote 94.0 0.047 1E-06 48.2 3.2 22 159-180 2-23 (119)
491 PF03193 DUF258: Protein of un 94.0 0.071 1.5E-06 49.3 4.4 36 142-180 24-59 (161)
492 cd00820 PEPCK_HprK Phosphoenol 94.0 0.05 1.1E-06 46.4 3.1 22 156-177 15-36 (107)
493 TIGR01313 therm_gnt_kin carboh 94.0 0.037 8E-07 52.1 2.7 22 159-180 1-22 (163)
494 PLN02924 thymidylate kinase 94.0 0.2 4.2E-06 49.6 7.8 25 156-180 16-40 (220)
495 PF03969 AFG1_ATPase: AFG1-lik 94.0 0.055 1.2E-06 57.7 4.1 97 155-270 61-167 (362)
496 COG2019 AdkA Archaeal adenylat 93.9 0.05 1.1E-06 49.5 3.1 25 156-180 4-28 (189)
497 cd01878 HflX HflX subfamily. 93.9 0.16 3.5E-06 49.8 7.2 27 154-180 39-65 (204)
498 PRK14527 adenylate kinase; Pro 93.9 0.054 1.2E-06 52.5 3.7 26 155-180 5-30 (191)
499 PRK03846 adenylylsulfate kinas 93.9 0.057 1.2E-06 52.7 3.9 27 154-180 22-48 (198)
500 cd01130 VirB11-like_ATPase Typ 93.9 0.034 7.5E-07 53.6 2.2 36 144-180 14-49 (186)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-95 Score=835.35 Aligned_cols=774 Identities=42% Similarity=0.690 Sum_probs=634.2
Q ss_pred ccccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh----
Q 037138 4 GKAAYISELEDNLDALLTELQKLIEAKNDVMTRVVNAEQQQQLRRLNKVQGWLSRVEGAETEIGELITDSTREIQK---- 79 (806)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~~~~ae~~~~~~~~~~v~~Wl~~l~~~~~~~~d~ld~~~~~~~~---- 79 (806)
++...+.++.+++..|++++..|+.++. +|+.+ + .....+..|.+.++++.|+++|+++.+..+...
T Consensus 18 ~~~~~~~~~~~~i~~Lk~~L~~l~~~l~-------d~~a~-~-~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~ 88 (889)
T KOG4658|consen 18 RESECLDGKDNYILELKENLKALQSALE-------DLDAK-R-DDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKAN 88 (889)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHH-------HHHhh-c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777788888888888888854 45555 2 345678899999999999999999998654421
Q ss_pred ------------hhcCCccCCCchhhhhHHHHHHHHHHHHHHHHhcCCcceecc-cCCCccccCCCCCCcc-ccchHHHH
Q 037138 80 ------------LCLGGYCSKNCKSSYKFGKKVAKKLHLVVTLMGEGAFELVAE-KVPLAAVDARPVEPTI-VGLNSTLE 145 (806)
Q Consensus 80 ------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~gr~~~~~ 145 (806)
-|..++|.+.....+.+++++.+.+++++.+..++.|..+.. ..|......+|..+.. ||.+..++
T Consensus 89 ~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~ 168 (889)
T KOG4658|consen 89 DLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGLETMLE 168 (889)
T ss_pred HHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccccccHHHHHH
Confidence 233455666777788899999999999999988877776654 2233333444444433 99999999
Q ss_pred HHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC----CCCHH
Q 037138 146 KVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE----NRSLE 221 (806)
Q Consensus 146 ~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----~~~~~ 221 (806)
++++.|.+++..+++|+||||+||||||++++|+...++.+||.++||+||++++..+++++|++.++... ....+
T Consensus 169 kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~ 248 (889)
T KOG4658|consen 169 KLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEED 248 (889)
T ss_pred HHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHH
Confidence 99999998888999999999999999999999998438999999999999999999999999999998744 33447
Q ss_pred HHHHHHHHHhCCCcEEEEEecCCCccCcccccccCCC-CCCcEEEEecCC------------ceecccCChHHHHHHHHh
Q 037138 222 ERASGIFKILSKKKFLLLLDDVWERIDLTKVGIPFPS-KNTSKVVFTTRL------------IFKVECLRDKEAWELFLD 288 (806)
Q Consensus 222 ~~~~~l~~~l~~k~~LlvlDdv~~~~~~~~~~~~~~~-~~~s~iivTtr~------------~~~l~~L~~~e~~~lf~~ 288 (806)
+.+..+.+.|++|||+|||||||+..+|+.++.++|. .+||+|++|||+ .++++.|+++|||.||++
T Consensus 249 ~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~ 328 (889)
T KOG4658|consen 249 ELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQK 328 (889)
T ss_pred HHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHH
Confidence 8899999999999999999999999999999999999 799999999999 689999999999999999
Q ss_pred hhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhh--hcCCCCHHHHHHHHHHHhhc-ccCCCCCccchhhhhhhchhcC
Q 037138 289 KVGEETLDSHLDIPKLAHTLAKECGGLPLALITTG--LGCKKSQEEWSYAIEILRRS-ASELPGMGKEVYPLLKFSYDSL 365 (806)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g--~~~~~~~~~w~~~l~~l~~~-~~~~~~~~~~~~~~l~~sy~~L 365 (806)
.++......++.++++|++|+++|+|+|||++++| |+.+.+..+|+.+.+.+.+. ..+.+++.+.+++++++|||.|
T Consensus 329 ~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L 408 (889)
T KOG4658|consen 329 KVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNL 408 (889)
T ss_pred hhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhh
Confidence 99987656667799999999999999999999999 89999999999999999887 5566677789999999999999
Q ss_pred ChhhHHHHHhhhcCCCCCCcccHHHHHHHHHHcCCccCCC-chhHHHhHHHHHHHHHHcccceeeC----CCcEEehHHH
Q 037138 366 SSEIFRSCLLYCSLFPEDCKIDKIELIECWIGEGFLNGYE-GAEVHNQGYYIIGILVHACLLEEVG----SDHVRMHDAI 440 (806)
Q Consensus 366 ~~~~~k~cfl~~~~fp~~~~i~~~~li~~Wia~g~i~~~~-~~~~~~~~~~~~~~L~~~sll~~~~----~~~~~mHdlv 440 (806)
|+ ++|.||+|||+|||||.|+++.||.+||||||+.+.. ...+++.|+.|+.+|++++|++..+ ..+|+|||+|
T Consensus 409 ~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvv 487 (889)
T KOG4658|consen 409 PE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVV 487 (889)
T ss_pred hH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHH
Confidence 95 8999999999999999999999999999999999965 8889999999999999999999864 3789999999
Q ss_pred HHHHHHHHhhhhhcccceEE------------------EEEeeecccccccCCCCCCCccccccccccc--hhcchhHhh
Q 037138 441 RDMTLWIACEVEKEKENVLR------------------RRISLMRNKIEKLSDTPTCPHLLSLFPNINR--LKTIARRFF 500 (806)
Q Consensus 441 ~d~a~~~~~~~~~~~~~~~~------------------~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~~ 500 (806)
|++|.+++++.+.++++..+ |+++++++.+..++....+++|++|.+..|. +..++..+|
T Consensus 488 Re~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff 567 (889)
T KOG4658|consen 488 REMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFF 567 (889)
T ss_pred HHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHH
Confidence 99999999976654444322 9999999999999999999999999999995 888999999
Q ss_pred ccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEEecCCCccccccccccccCCCCCcE
Q 037138 501 DFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHV 580 (806)
Q Consensus 501 ~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~ 580 (806)
..|+.|++|||++|...+.+|.+|+.|.+||||+++++.++.+|.++++|..|.+||+..+..+..+| ++...|++|++
T Consensus 568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRV 646 (889)
T ss_pred hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc-chhhhcccccE
Confidence 99999999999999888999999999999999999999999999999999999999999998666665 44677999999
Q ss_pred EEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhchhhccccccceeccCCCCCccccccc
Q 037138 581 LRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSL 660 (806)
Q Consensus 581 L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l 660 (806)
|.+....... ......++..|.+|+.+.+.......+..+.....+..+...+.+.. ........++
T Consensus 647 L~l~~s~~~~-----------~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~--~~~~~~~~~~ 713 (889)
T KOG4658|consen 647 LRLPRSALSN-----------DKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEG--CSKRTLISSL 713 (889)
T ss_pred EEeecccccc-----------chhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcc--cccceeeccc
Confidence 9998765221 23455778888888888887655433344443444444444444322 2222233467
Q ss_pred ccccccceEeeccccCcc----------------ccceeeecccCCcCCCCccccCCCcceEeeecCccchhhhcccccC
Q 037138 661 ADLKHLDKLDLIYCRNLE----------------EFKKVMIDFCIKLREVTWLVFAPNLKSIHIANCHFMQEIISARKLG 724 (806)
Q Consensus 661 ~~l~~L~~L~L~~~~~~~----------------~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~ 724 (806)
..+.+|+.|.+.+|...+ .+..+.+.+|...+.+.|....|+|+.|.+..|..++++++.....
T Consensus 714 ~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~ 793 (889)
T KOG4658|consen 714 GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKAL 793 (889)
T ss_pred ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHh
Confidence 889999999999998743 2445566688889999999999999999999999988887643211
Q ss_pred c-cccccCCCCccccccee-cccccccccccccCCCCCchHHHH-HccCCCCCCCCCCCCcccccc---eeEeeeecccC
Q 037138 725 E-VPELIGNLKPFAKLQYL-HLRALPSLKSIYWNALPSHIWKKL-IMGCAGLKKLPLDSNSRKEHR---LVNRERRQKSG 798 (806)
Q Consensus 725 ~-ip~~~~~~~~~~~L~~L-~L~~~~~L~~l~~~~~~~~~L~~l-l~~c~~L~~L~l~~n~~~~~l---~~i~~~~~~~~ 798 (806)
. ... ....|.++..+ .+.+.+.++.+.+....++.++.+ +..||+|..+|...-..+... .......+|-.
T Consensus 794 ~~l~~---~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~ 870 (889)
T KOG4658|consen 794 LELKE---LILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLE 870 (889)
T ss_pred hhccc---EEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCcccee
Confidence 1 111 12346677777 588888888888888899999999 999999999998754432221 12223345556
Q ss_pred CCcccc
Q 037138 799 GKSFDE 804 (806)
Q Consensus 799 ~~~~~~ 804 (806)
..+|++
T Consensus 871 ~v~~~~ 876 (889)
T KOG4658|consen 871 GVYWED 876 (889)
T ss_pred eEEehh
Confidence 666654
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.3e-61 Score=587.89 Aligned_cols=587 Identities=20% Similarity=0.280 Sum_probs=384.1
Q ss_pred CccccchHHHHHHHHHhc--CCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEe---CCc-----------
Q 037138 135 PTIVGLNSTLEKVWRCLG--EERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVV---SKD----------- 198 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~---s~~----------- 198 (806)
+.+|||+..++++..++. .+++++|+||||||+||||||+++|+.. ...|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 468999999999998884 4579999999999999999999999987 678998888742 111
Q ss_pred cc-HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCccCcccccccCCC-CCCcEEEEecCC------
Q 037138 199 MQ-LERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERIDLTKVGIPFPS-KNTSKVVFTTRL------ 270 (806)
Q Consensus 199 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~~~~~~~~~~~-~~~s~iivTtr~------ 270 (806)
++ ...++++++.++......... ....+++.++++|+||||||||+..+|+.+...... ++||+||||||+
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~~~~-~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~ 339 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDIKIY-HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRA 339 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCcccC-CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHh
Confidence 11 223455555554332211111 124577889999999999999998889888766555 889999999998
Q ss_pred -----ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhh-hcCCCCHHHHHHHHHHHhhcc
Q 037138 271 -----IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITTG-LGCKKSQEEWSYAIEILRRSA 344 (806)
Q Consensus 271 -----~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g-~~~~~~~~~w~~~l~~l~~~~ 344 (806)
.|+++.|+++|||+||+++||... ....++.+++++|+++|+|+|||++++| ....++.++|+.+++.++...
T Consensus 340 ~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~ 418 (1153)
T PLN03210 340 HGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL 418 (1153)
T ss_pred cCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc
Confidence 689999999999999999998765 2345688999999999999999999999 444568899999999987643
Q ss_pred cCCCCCccchhhhhhhchhcCChhhHHHHHhhhcCCCCCCcccHHHHHHHHHHcCCccCCCchhHHHhHHHHHHHHHHcc
Q 037138 345 SELPGMGKEVYPLLKFSYDSLSSEIFRSCLLYCSLFPEDCKIDKIELIECWIGEGFLNGYEGAEVHNQGYYIIGILVHAC 424 (806)
Q Consensus 345 ~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~~~~~~~~~~~L~~~s 424 (806)
+.++..+|++||+.|+++..|.||+++|+|+.+..++ .+..|++.+.... +..++.|+++|
T Consensus 419 ------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~~L~~ks 479 (1153)
T PLN03210 419 ------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLKNLVDKS 479 (1153)
T ss_pred ------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChHHHHhcC
Confidence 2489999999999998745799999999999887554 4677888765432 12388899999
Q ss_pred cceeeCCCcEEehHHHHHHHHHHHhhhhh--cccce------------------EEEEEeeecc----------------
Q 037138 425 LLEEVGSDHVRMHDAIRDMTLWIACEVEK--EKENV------------------LRRRISLMRN---------------- 468 (806)
Q Consensus 425 ll~~~~~~~~~mHdlv~d~a~~~~~~~~~--~~~~~------------------~~~~ls~~~~---------------- 468 (806)
|++.. .+++.|||++|+||++++.+... .+..+ .++.+++...
T Consensus 480 Li~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~ 558 (1153)
T PLN03210 480 LIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMR 558 (1153)
T ss_pred CEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCc
Confidence 99876 46799999999999999865321 00001 1122222211
Q ss_pred -----------------------------------------cccccCCCCCCCccccccccccchhcchhHhhccCCccc
Q 037138 469 -----------------------------------------KIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLT 507 (806)
Q Consensus 469 -----------------------------------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 507 (806)
.+..+|....+.+|+.|++.+|.+..++.. +..+++|+
T Consensus 559 ~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk 637 (1153)
T PLN03210 559 NLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLR 637 (1153)
T ss_pred cccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCC
Confidence 111222222334455555555544444433 34555666
Q ss_pred EEEccCCCcccccCcccCCCCCCCEEEecCC-CccccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecc
Q 037138 508 VLNLSNNGFLTKLRPGISKLVSLQYLNLSKT-SIRELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNC 586 (806)
Q Consensus 508 ~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n-~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~ 586 (806)
+|+|+++..++.+| .++.+++|++|+|++| .+..+|..++++++|+.|++++|..+..+|.. + ++++|+.|++++|
T Consensus 638 ~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 638 NIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGC 714 (1153)
T ss_pred EEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCC
Confidence 66666554455555 3555666666666655 34456666666666666666666555556653 2 5566666666665
Q ss_pred cCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhchhh-------------------------cccc
Q 037138 587 DYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSHEL-------------------------QNCT 641 (806)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l-------------------------~~~~ 641 (806)
.....+| ....+|+.|+++.+.+..++.......+ ....
T Consensus 715 ~~L~~~p----------------~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 715 SRLKSFP----------------DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCccccc----------------cccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccc
Confidence 4433322 0123455555555444332211000000 0001
Q ss_pred ccceeccCCCCCcc-cccccccccccceEeeccccCcc---------ccceeeecccCCcCCCCccccCCCcceEeeecC
Q 037138 642 KSLNLRYYDDSKSF-NIYSLADLKHLDKLDLIYCRNLE---------EFKKVMIDFCIKLREVTWLVFAPNLKSIHIANC 711 (806)
Q Consensus 642 ~~l~L~~~~~~~~~-~~~~l~~l~~L~~L~L~~~~~~~---------~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~~ 711 (806)
.+..|...++.... .+.+++++++|+.|+|++|..++ .|+.|.+++|..+..++.+ .++|+.|+|++|
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n 856 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI--STNISDLNLSRT 856 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc--ccccCEeECCCC
Confidence 11122222221111 11245556666666666654322 2555666666555544322 245666666665
Q ss_pred ccchhhhcccccCccccccCCCCcccccceecccccccccccccCCCCCchHHHH-HccCCCCCCCCCCCC
Q 037138 712 HFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKSIYWNALPSHIWKKL-IMGCAGLKKLPLDSN 781 (806)
Q Consensus 712 ~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~l-l~~c~~L~~L~l~~n 781 (806)
.+ ..+|.+ +..+++|+.|+|++|++|+.++.....++.|+.+ +.+|++|+.+++..+
T Consensus 857 ~i----------~~iP~s---i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~ 914 (1153)
T PLN03210 857 GI----------EEVPWW---IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGS 914 (1153)
T ss_pred CC----------ccChHH---HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCC
Confidence 54 456653 4456799999999999999998877778888888 999999998877543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.2e-44 Score=375.26 Aligned_cols=263 Identities=38% Similarity=0.666 Sum_probs=218.2
Q ss_pred chHHHHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC-
Q 037138 140 LNSTLEKVWRCLGE--ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE- 216 (806)
Q Consensus 140 r~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~- 216 (806)
||.++++|.+.|.+ ++.++|+|+||||+||||||++++++. ....+|+.++|+.++...+...++..|+.+++...
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999987 789999999999999999999999995 35899999999999999999999999999998773
Q ss_pred ----CCCHHHHHHHHHHHhCCCcEEEEEecCCCccCcccccccCCC-CCCcEEEEecCC------------ceecccCCh
Q 037138 217 ----NRSLEERASGIFKILSKKKFLLLLDDVWERIDLTKVGIPFPS-KNTSKVVFTTRL------------IFKVECLRD 279 (806)
Q Consensus 217 ----~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~~~~~~~~~~~-~~~s~iivTtr~------------~~~l~~L~~ 279 (806)
..+..+....+++.|+++++||||||||+...|+.+...++. ..|++||||||+ .|++++|+.
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 567888999999999999999999999999999988888877 779999999998 589999999
Q ss_pred HHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhh--hcCCCCHHHHHHHHHHHhhcccCCCCCccchhhh
Q 037138 280 KEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITTG--LGCKKSQEEWSYAIEILRRSASELPGMGKEVYPL 357 (806)
Q Consensus 280 ~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g--~~~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~ 357 (806)
+||++||++.++.......+.+++.+++|+++|+|+|||++++| ++.+.+..+|+.+++.+.....+..+....++.+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999998765423345667889999999999999999999 5445578999999998887765544455789999
Q ss_pred hhhchhcCChhhHHHHHhhhcCCCCCCcccHHHHHHHHHHcCCccCC
Q 037138 358 LKFSYDSLSSEIFRSCLLYCSLFPEDCKIDKIELIECWIGEGFLNGY 404 (806)
Q Consensus 358 l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~Wia~g~i~~~ 404 (806)
+.+||+.||+ ++|.||+|||+||+++.|+++.++++|+++||+...
T Consensus 240 l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 240 LELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999 899999999999999999999999999999999864
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=6.4e-21 Score=233.78 Aligned_cols=236 Identities=23% Similarity=0.271 Sum_probs=151.4
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
+++.+.+|.+........+++|++|++++|.+....+..++.+++|++|+|++|.+.+.+|..++++++|++|+|++|.+
T Consensus 121 ~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 200 (968)
T PLN00113 121 RYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200 (968)
T ss_pred CEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC
Confidence 56666666654322234567778888887777655555577788888888888766677777788888888888888777
Q ss_pred c-ccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeee
Q 037138 541 R-ELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLT 619 (806)
Q Consensus 541 ~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 619 (806)
. .+|..++++++|++|++++|.+.+.+|.. ++++++|++|++++|.+.+.+| ..+..+++|+.|+
T Consensus 201 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p-------------~~l~~l~~L~~L~ 266 (968)
T PLN00113 201 VGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIP-------------SSLGNLKNLQYLF 266 (968)
T ss_pred cCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceeccccC-------------hhHhCCCCCCEEE
Confidence 6 67777888888888888887766667765 7778888888888777766554 4566777777777
Q ss_pred EEecchhhHHHhhhchhhccccccceeccCCCCCcccc-cccccccccceEeeccccCc----------cccceeeeccc
Q 037138 620 IALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNI-YSLADLKHLDKLDLIYCRNL----------EEFKKVMIDFC 688 (806)
Q Consensus 620 l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~----------~~L~~L~l~~c 688 (806)
++.|.+.+.. +..+..+.++..|+...|...... ..+..+++|+.|++++|... ..|+.|.+++|
T Consensus 267 L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 267 LYQNKLSGPI----PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred CcCCeeeccC----chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC
Confidence 7766553211 122233334444444444333222 24556667777777666432 12666666665
Q ss_pred CCcCCC-CccccCCCcceEeeecCccc
Q 037138 689 IKLREV-TWLVFAPNLKSIHIANCHFM 714 (806)
Q Consensus 689 ~~l~~~-~~l~~l~~L~~L~L~~~~~~ 714 (806)
.....+ ..++.+++|+.|++++|...
T Consensus 343 ~l~~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 343 KFSGEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred CCcCcCChHHhCCCCCcEEECCCCeeE
Confidence 544332 34566667777777766653
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=2.3e-20 Score=228.97 Aligned_cols=269 Identities=20% Similarity=0.273 Sum_probs=143.4
Q ss_pred EEEeeecccccc-cCC-CCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCC
Q 037138 461 RRISLMRNKIEK-LSD-TPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKT 538 (806)
Q Consensus 461 ~~ls~~~~~~~~-~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n 538 (806)
+.+.+.+|.+.. +|. ..++++|++|++++|.+....+..+..+++|++|+|++|.+.+.+|..++++++|++|+|++|
T Consensus 143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222 (968)
T ss_pred CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence 455555555542 232 245666666666666655444445666666666666666555566666666666666666666
Q ss_pred Ccc-ccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCC--------ccccCCc---cchH
Q 037138 539 SIR-ELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLD--------SILFGGC---ESLV 606 (806)
Q Consensus 539 ~l~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~--------~~~~~~~---~~~~ 606 (806)
.+. .+|..++++++|++|++++|.+.+.+|.. ++++++|++|++++|.+.+.+|.. ...++++ ...+
T Consensus 223 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence 665 56666666666666666666655555554 666666666666666665544300 0000000 0111
Q ss_pred HHhcCCCCCCeeeEEecchhhHHHhhhchhhccccccceeccCCCCCcccc-cccccccccceEeeccccCcc-------
Q 037138 607 EELISLKHLNVLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNI-YSLADLKHLDKLDLIYCRNLE------- 678 (806)
Q Consensus 607 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~------- 678 (806)
..+..+++|+.|+++.|.+.... +..+..+.++..|....+...... ..+..+++|+.|++++|....
T Consensus 302 ~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 377 (968)
T PLN00113 302 ELVIQLQNLEILHLFSNNFTGKI----PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377 (968)
T ss_pred hhHcCCCCCcEEECCCCccCCcC----ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh
Confidence 34455555555555555443211 111222333333333333332222 245556666666666664321
Q ss_pred ---ccceeeecccCCcCCC-CccccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceecccc
Q 037138 679 ---EFKKVMIDFCIKLREV-TWLVFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRA 746 (806)
Q Consensus 679 ---~L~~L~l~~c~~l~~~-~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~ 746 (806)
.|+.|.+.++.....+ .++..+++|+.|++++|.+. +.+|. .+..+++|+.|++++
T Consensus 378 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~---------~~~p~---~~~~l~~L~~L~Ls~ 437 (968)
T PLN00113 378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS---------GELPS---EFTKLPLVYFLDISN 437 (968)
T ss_pred CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee---------eECCh---hHhcCCCCCEEECcC
Confidence 2555666555433322 34566777777777777662 33443 233455677777665
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=2.7e-21 Score=201.93 Aligned_cols=255 Identities=22% Similarity=0.291 Sum_probs=185.0
Q ss_pred EEEeeecccccccCCC-CCCCccccccccccchh--cchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecC
Q 037138 461 RRISLMRNKIEKLSDT-PTCPHLLSLFPNINRLK--TIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSK 537 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~ 537 (806)
.|+++.+|.+.++... +.++.||++++..|++. ++|+. +-.+..|.+||||+| .+...|..+..-+++-.|+||+
T Consensus 58 EHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~ 135 (1255)
T KOG0444|consen 58 EHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSY 135 (1255)
T ss_pred hhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchh-hhhhcchhhhhhcCcEEEEccc
Confidence 5677777777665433 77889999999888664 56777 446889999999999 6778888888889999999999
Q ss_pred CCccccChh-hhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCC
Q 037138 538 TSIRELPKE-LKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLN 616 (806)
Q Consensus 538 n~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 616 (806)
|+|.++|.. +-+|+-|-+||||+|+ +..+|+. +..|.+|++|.|++|.+..- -+..+.++++|+
T Consensus 136 N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NPL~hf-------------QLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 136 NNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNPLNHF-------------QLRQLPSMTSLS 200 (1255)
T ss_pred CccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCChhhHH-------------HHhcCccchhhh
Confidence 999999876 4688889999999987 7888887 88899999999998876531 223455566667
Q ss_pred eeeEEecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCccc---------cceeeecc
Q 037138 617 VLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEE---------FKKVMIDF 687 (806)
Q Consensus 617 ~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~---------L~~L~l~~ 687 (806)
.|.+++..-. +.++ +.++..+..+..++++.|.....+..+-.+++|+.|+|++|...+- |+.|+++.
T Consensus 201 vLhms~TqRT-l~N~--Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 201 VLHMSNTQRT-LDNI--PTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSR 277 (1255)
T ss_pred hhhcccccch-hhcC--CCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhcccc
Confidence 7777754432 1111 2333444455566777666665555777889999999999875442 78888887
Q ss_pred cCCcCCCCccccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceecccc
Q 037138 688 CIKLREVTWLVFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRA 746 (806)
Q Consensus 688 c~~l~~~~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~ 746 (806)
......|..++.++.|+.|.+.+|.+. ...+|..|+.+. +|+.+...+
T Consensus 278 NQLt~LP~avcKL~kL~kLy~n~NkL~--------FeGiPSGIGKL~---~Levf~aan 325 (1255)
T KOG0444|consen 278 NQLTVLPDAVCKLTKLTKLYANNNKLT--------FEGIPSGIGKLI---QLEVFHAAN 325 (1255)
T ss_pred chhccchHHHhhhHHHHHHHhccCccc--------ccCCccchhhhh---hhHHHHhhc
Confidence 554444557888999999999988873 235676555443 677776665
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=8e-20 Score=190.06 Aligned_cols=285 Identities=21% Similarity=0.231 Sum_probs=175.3
Q ss_pred EEEEeeecccccccCCC--CCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecC
Q 037138 460 RRRISLMRNKIEKLSDT--PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSK 537 (806)
Q Consensus 460 ~~~ls~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~ 537 (806)
..++++.+|.|.++... .-++.||+|+|+.|.+..++...|..-.++++|+|++|.+...-...|..+.+|-.|.|+.
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr 206 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR 206 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc
Confidence 35666666666655332 4566677777777777777666666666777777777755444455666677777777777
Q ss_pred CCccccCh-hhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCC
Q 037138 538 TSIRELPK-ELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLN 616 (806)
Q Consensus 538 n~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 616 (806)
|.++.+|. .|.+|++|+.|+|..|+ +..+..-.|..|++|+.|.+..|.+...-. +.+-.+.+++
T Consensus 207 NrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~D-------------G~Fy~l~kme 272 (873)
T KOG4194|consen 207 NRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDD-------------GAFYGLEKME 272 (873)
T ss_pred CcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccC-------------cceeeecccc
Confidence 77777765 34557777777777775 333322236667777777777766653211 3566677888
Q ss_pred eeeEEecchhhHHHhhhchhhccccccceeccCCCCCcc-cccccccccccceEeeccccCccc----------cceeee
Q 037138 617 VLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSF-NIYSLADLKHLDKLDLIYCRNLEE----------FKKVMI 685 (806)
Q Consensus 617 ~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~-~~~~l~~l~~L~~L~L~~~~~~~~----------L~~L~l 685 (806)
.|++..|.+..+. ...+.++..+..|+.+.|.... .+.+...+++|+.|+|++|..... |+.|.+
T Consensus 273 ~l~L~~N~l~~vn----~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 273 HLNLETNRLQAVN----EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred eeecccchhhhhh----cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 8888888776554 2234445555555555554332 223566678888888888754321 555555
Q ss_pred cccCCcCCCC--ccccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceecccccccccccccCCCCCchH
Q 037138 686 DFCIKLREVT--WLVFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKSIYWNALPSHIW 763 (806)
Q Consensus 686 ~~c~~l~~~~--~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L 763 (806)
+.. .+..+. .+..+.+|+.|+|++|.+. ..+.+.-..+.++|+|+.|++.+ .+|++++..
T Consensus 349 s~N-si~~l~e~af~~lssL~~LdLr~N~ls---------~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~kr------- 410 (873)
T KOG4194|consen 349 SHN-SIDHLAEGAFVGLSSLHKLDLRSNELS---------WCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKR------- 410 (873)
T ss_pred ccc-chHHHHhhHHHHhhhhhhhcCcCCeEE---------EEEecchhhhccchhhhheeecC-ceeeecchh-------
Confidence 542 222221 3445778888888888762 23333334456678888888876 445544321
Q ss_pred HHHHccCCCCCCCCCCCCc
Q 037138 764 KKLIMGCAGLKKLPLDSNS 782 (806)
Q Consensus 764 ~~ll~~c~~L~~L~l~~n~ 782 (806)
-+.+.++|+.|++++|.
T Consensus 411 --Afsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 411 --AFSGLEALEHLDLGDNA 427 (873)
T ss_pred --hhccCcccceecCCCCc
Confidence 16677888888888875
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=2.6e-20 Score=194.62 Aligned_cols=289 Identities=21% Similarity=0.270 Sum_probs=204.7
Q ss_pred EEEeeecccccccCCC-CCCCccccccccccchhcchhHhhccCCcccEEEccCCCcc-cccCcccCCCCCCCEEEecCC
Q 037138 461 RRISLMRNKIEKLSDT-PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFL-TKLRPGISKLVSLQYLNLSKT 538 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~-~~lp~~i~~l~~L~~L~Ls~n 538 (806)
+.+.+....+..+|.. ..|.+|..|.+.+|++..+... ++.++.||.+++..|+.- ..+|..|..|..|..||||+|
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN 113 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhccccccCCCCchhcccccceeeecchh
Confidence 6777777777777755 7789999999999999887654 889999999999998543 348999999999999999999
Q ss_pred CccccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCee
Q 037138 539 SIRELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVL 618 (806)
Q Consensus 539 ~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 618 (806)
++++.|..+..-+++-+|+||+|+ +..+|..++.+|+.|-.|+|++|.+... | .....|.+|++|
T Consensus 114 qL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~L-P-------------PQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 114 QLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEML-P-------------PQIRRLSMLQTL 178 (1255)
T ss_pred hhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhc-C-------------HHHHHHhhhhhh
Confidence 999999999999999999999998 7999999999999999999999987643 3 578889999999
Q ss_pred eEEecchhhHHHhhhchhhcccc--ccceeccCCCCCcccccccccccccceEeeccccCcc---------ccceeeecc
Q 037138 619 TIALKSFFALQRFLSSHELQNCT--KSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLE---------EFKKVMIDF 687 (806)
Q Consensus 619 ~l~~~~~~~~~~~~~~~~l~~~~--~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~---------~L~~L~l~~ 687 (806)
.+++|.+..+. ...+..+. +.+.++.........+.++..+.||..++++.|.... +|+.|++++
T Consensus 179 ~Ls~NPL~hfQ----LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 179 KLSNNPLNHFQ----LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred hcCCChhhHHH----HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCc
Confidence 99998875443 22222233 3333333333333333578889999999999875322 255555555
Q ss_pred cCCcCCCC-ccccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceecccccc-cccccccCCCC------
Q 037138 688 CIKLREVT-WLVFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALP-SLKSIYWNALP------ 759 (806)
Q Consensus 688 c~~l~~~~-~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~-~L~~l~~~~~~------ 759 (806)
.. ++.+. ..+...+|+.|++|.|.+ ..+|..++ .+++|+.|.+.+.. +.+.||.+...
T Consensus 255 N~-iteL~~~~~~W~~lEtLNlSrNQL----------t~LP~avc---KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev 320 (1255)
T KOG0444|consen 255 NK-ITELNMTEGEWENLETLNLSRNQL----------TVLPDAVC---KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV 320 (1255)
T ss_pred Cc-eeeeeccHHHHhhhhhhccccchh----------ccchHHHh---hhHHHHHHHhccCcccccCCccchhhhhhhHH
Confidence 32 22222 233345666666666665 45675333 44678877776511 11223322211
Q ss_pred ----CchHHHH---HccCCCCCCCCCCCCcc
Q 037138 760 ----SHIWKKL---IMGCAGLKKLPLDSNSR 783 (806)
Q Consensus 760 ----~~~L~~l---l~~c~~L~~L~l~~n~~ 783 (806)
-+.|+-. +..|++|+.|.++.|++
T Consensus 321 f~aanN~LElVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 321 FHAANNKLELVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred HHhhccccccCchhhhhhHHHHHhcccccce
Confidence 1222222 67899999999999884
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.73 E-value=1.9e-18 Score=179.95 Aligned_cols=271 Identities=21% Similarity=0.244 Sum_probs=163.3
Q ss_pred CccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccC-hhhhcCCCCcEEec
Q 037138 480 PHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELP-KELKALVNLKYLNL 558 (806)
Q Consensus 480 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp-~~i~~L~~L~~L~L 558 (806)
+..++|++++|.+..+...+|.++++|+.+++.+| .+..+|.......||+.|+|.+|.|+++. +++..++.|+.|||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 45567888888888888888888888888888888 67777876666777888888888887664 35777888888888
Q ss_pred CCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhchhhc
Q 037138 559 EHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSHELQ 638 (806)
Q Consensus 559 ~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~ 638 (806)
|.|. +..+|...|..-.++++|+|++|.++.. . ...+.++.+|-.|.++.|.++.++. ..+.
T Consensus 157 SrN~-is~i~~~sfp~~~ni~~L~La~N~It~l-~------------~~~F~~lnsL~tlkLsrNrittLp~----r~Fk 218 (873)
T KOG4194|consen 157 SRNL-ISEIPKPSFPAKVNIKKLNLASNRITTL-E------------TGHFDSLNSLLTLKLSRNRITTLPQ----RSFK 218 (873)
T ss_pred hhch-hhcccCCCCCCCCCceEEeecccccccc-c------------cccccccchheeeecccCcccccCH----HHhh
Confidence 8886 5777766577777888888888877643 1 1345556666666777666665542 2333
Q ss_pred cccccceeccCCCCCccc-ccccccccccceEeeccccCcc----------ccceeeecccCCcCCC--CccccCCCcce
Q 037138 639 NCTKSLNLRYYDDSKSFN-IYSLADLKHLDKLDLIYCRNLE----------EFKKVMIDFCIKLREV--TWLVFAPNLKS 705 (806)
Q Consensus 639 ~~~~~l~L~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~----------~L~~L~l~~c~~l~~~--~~l~~l~~L~~ 705 (806)
++.++..|++..|..... ...|..+++|+.|.|..|.... .++.|++... .+..+ .|+.+|.+|++
T Consensus 219 ~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~ 297 (873)
T KOG4194|consen 219 RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQ 297 (873)
T ss_pred hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhh
Confidence 344444555544433322 1245566666666666554321 1444444332 22222 26666777777
Q ss_pred EeeecCccchhhhcccccCccccccCCCCcccccceecccc-------------cccccccccCCCCCchHHHH-HccCC
Q 037138 706 IHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRA-------------LPSLKSIYWNALPSHIWKKL-IMGCA 771 (806)
Q Consensus 706 L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~-------------~~~L~~l~~~~~~~~~L~~l-l~~c~ 771 (806)
|+|++|.+- .+.. ......++|+.|+|++ +..|+.+....+....+.+. +.++.
T Consensus 298 L~lS~NaI~----------rih~--d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls 365 (873)
T KOG4194|consen 298 LDLSYNAIQ----------RIHI--DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS 365 (873)
T ss_pred hccchhhhh----------eeec--chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh
Confidence 777777651 1111 1122235666666664 22233333333334444444 55666
Q ss_pred CCCCCCCCCCc
Q 037138 772 GLKKLPLDSNS 782 (806)
Q Consensus 772 ~L~~L~l~~n~ 782 (806)
+|+.|+++.|.
T Consensus 366 sL~~LdLr~N~ 376 (873)
T KOG4194|consen 366 SLHKLDLRSNE 376 (873)
T ss_pred hhhhhcCcCCe
Confidence 66666666665
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.67 E-value=2.6e-16 Score=193.29 Aligned_cols=284 Identities=19% Similarity=0.270 Sum_probs=157.8
Q ss_pred CCCCccccccccccchh-------cchhHhhccC-CcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhh
Q 037138 477 PTCPHLLSLFPNINRLK-------TIARRFFDFM-PSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELK 548 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~-------~~~~~~~~~l-~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~ 548 (806)
.++++|+.|.+..+... .+|.+ |..+ .+|+.|++.++ ....+|..+ .+.+|+.|++++|.+..+|.++.
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~ 631 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVH 631 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCccccccccccc
Confidence 46788888877654211 23333 3333 45777777776 566667665 45677777777777777777777
Q ss_pred cCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecc-hhh
Q 037138 549 ALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKS-FFA 627 (806)
Q Consensus 549 ~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~-~~~ 627 (806)
.+++|+.|++++|..+..+|. ++.+++|++|++++|.....+| ..+..+++|+.|+++.+. +..
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp-------------~si~~L~~L~~L~L~~c~~L~~ 696 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELP-------------SSIQYLNKLEDLDMSRCENLEI 696 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccc-------------hhhhccCCCCEEeCCCCCCcCc
Confidence 777777777776665666664 6667777777777765554444 334444455555444321 111
Q ss_pred HHHhh-----------------hchhhccccccceeccCCCCCcccccccccccccceEeeccccC--------------
Q 037138 628 LQRFL-----------------SSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRN-------------- 676 (806)
Q Consensus 628 ~~~~~-----------------~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~-------------- 676 (806)
++... ..+.....++.+.+ ..+.... .+....+++|++|.+.++..
T Consensus 697 Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L--~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 697 LPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDL--DETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred cCCcCCCCCCCEEeCCCCCCccccccccCCcCeeec--CCCcccc-ccccccccccccccccccchhhccccccccchhh
Confidence 11000 00001111122222 1221111 11112345666666655321
Q ss_pred ---ccccceeeecccCCcCCCC-ccccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceecccccccccc
Q 037138 677 ---LEEFKKVMIDFCIKLREVT-WLVFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKS 752 (806)
Q Consensus 677 ---~~~L~~L~l~~c~~l~~~~-~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~ 752 (806)
...|+.|.+++|..+..+| +++.+++|+.|+|++|..+ +.+|..+ .+++|+.|+|++|.+++.
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L---------~~LP~~~----~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL---------ETLPTGI----NLESLESLDLSGCSRLRT 840 (1153)
T ss_pred hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCc---------CeeCCCC----CccccCEEECCCCCcccc
Confidence 1236777777776665544 5677888888888888764 3445322 356777777777766654
Q ss_pred cc--------------------cCCCCCchHHHH-HccCCCCCCCCCCCCcccccceeEeeeec
Q 037138 753 IY--------------------WNALPSHIWKKL-IMGCAGLKKLPLDSNSRKEHRLVNRERRQ 795 (806)
Q Consensus 753 l~--------------------~~~~~~~~L~~l-l~~c~~L~~L~l~~n~~~~~l~~i~~~~~ 795 (806)
++ .....++.|+.+ +.+|++|+.++...+. ..+|+.+...+|
T Consensus 841 ~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~-L~~L~~L~l~~C 903 (1153)
T PLN03210 841 FPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISK-LKHLETVDFSDC 903 (1153)
T ss_pred ccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccccc-ccCCCeeecCCC
Confidence 43 222234556666 7788888887776554 356666665555
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=7.6e-19 Score=175.21 Aligned_cols=146 Identities=26% Similarity=0.392 Sum_probs=125.3
Q ss_pred ecccccccCCC-CCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccC
Q 037138 466 MRNKIEKLSDT-PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELP 544 (806)
Q Consensus 466 ~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp 544 (806)
.+|++..+|.. ..|.+|..|++.+|.++..|+..+. |+.|+.||...| ..+.+|+.++.+.+|.-|+|..|+|..+|
T Consensus 145 ~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lP 222 (565)
T KOG0472|consen 145 TNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFLP 222 (565)
T ss_pred cccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccCC
Confidence 45666666654 6788888999999999999888666 999999999999 88999999999999999999999999999
Q ss_pred hhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecc
Q 037138 545 KELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKS 624 (806)
Q Consensus 545 ~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 624 (806)
+|..+..|..|+++.|+ +..+|..+..++++|.+||+..|++.. .| .++.-|++|..|+++.|.
T Consensus 223 -ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNklke-~P-------------de~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 223 -EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNKLKE-VP-------------DEICLLRSLERLDLSNND 286 (565)
T ss_pred -CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeecccccccc-Cc-------------hHHHHhhhhhhhcccCCc
Confidence 78999999999998886 788998877799999999999998763 33 688889999999999998
Q ss_pred hhhHH
Q 037138 625 FFALQ 629 (806)
Q Consensus 625 ~~~~~ 629 (806)
+++++
T Consensus 287 is~Lp 291 (565)
T KOG0472|consen 287 ISSLP 291 (565)
T ss_pred cccCC
Confidence 87765
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.58 E-value=1.5e-17 Score=165.96 Aligned_cols=228 Identities=25% Similarity=0.303 Sum_probs=143.4
Q ss_pred CccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEEecC
Q 037138 480 PHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYLNLE 559 (806)
Q Consensus 480 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~ 559 (806)
..+..|++++|.+..+.++ +..+..|.+|++++| ....+|++++.+..++.|+.++|++.++|+.++.+.+|++|+.+
T Consensus 45 v~l~~lils~N~l~~l~~d-l~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLRED-LKNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred cchhhhhhccCchhhccHh-hhcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc
Confidence 4566777777777666655 677777888888877 56667777888888888888888888888888888888888888
Q ss_pred CCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhchhhcc
Q 037138 560 HSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSHELQN 639 (806)
Q Consensus 560 ~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~ 639 (806)
+|. ...+|++ ++.+..|..|+..+|.++.. | +.+.++.+|..+++.+|....+. ....+
T Consensus 123 ~n~-~~el~~~-i~~~~~l~dl~~~~N~i~sl-p-------------~~~~~~~~l~~l~~~~n~l~~l~-----~~~i~ 181 (565)
T KOG0472|consen 123 SNE-LKELPDS-IGRLLDLEDLDATNNQISSL-P-------------EDMVNLSKLSKLDLEGNKLKALP-----ENHIA 181 (565)
T ss_pred ccc-eeecCch-HHHHhhhhhhhccccccccC-c-------------hHHHHHHHHHHhhccccchhhCC-----HHHHH
Confidence 777 4666666 77777777777777776532 2 45555666666666666654432 12223
Q ss_pred ccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCc----------CCCC--ccccCCCcceEe
Q 037138 640 CTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKL----------REVT--WLVFAPNLKSIH 707 (806)
Q Consensus 640 ~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l----------~~~~--~l~~l~~L~~L~ 707 (806)
+.++..++.+.|.....++.++.+.+|+.|++..|+... +. .+.+|..+ +.++ ...++++|..|+
T Consensus 182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~-lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRF-LP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccccc-CC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeee
Confidence 555566666666666555677777777777777764211 11 11122111 1111 122556666666
Q ss_pred eecCccchhhhcccccCccccccCCCCcccccceecccc
Q 037138 708 IANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRA 746 (806)
Q Consensus 708 L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~ 746 (806)
+.+|+. .++|+.+.-+ .+|++||+++
T Consensus 259 LRdNkl----------ke~Pde~clL---rsL~rLDlSN 284 (565)
T KOG0472|consen 259 LRDNKL----------KEVPDEICLL---RSLERLDLSN 284 (565)
T ss_pred cccccc----------ccCchHHHHh---hhhhhhcccC
Confidence 666665 4556544433 3666666665
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.55 E-value=8.5e-16 Score=169.12 Aligned_cols=90 Identities=30% Similarity=0.504 Sum_probs=78.4
Q ss_pred CCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEE
Q 037138 477 PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYL 556 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L 556 (806)
.++-+|++|++++|.+...|.. +..+.+|+.|+++.| .+...|.+++++.+|++|+|.+|.+..+|.++..+.+|++|
T Consensus 42 ~~~v~L~~l~lsnn~~~~fp~~-it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 42 EKRVKLKSLDLSNNQISSFPIQ-ITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYL 119 (1081)
T ss_pred hheeeeEEeeccccccccCCch-hhhHHHHhhcccchh-hHhhCchhhhhhhcchhheeccchhhcCchhHHhhhccccc
Confidence 3455699999999988877765 788899999999999 88889999999999999999999999999999999999999
Q ss_pred ecCCCcccccccc
Q 037138 557 NLEHSRYLHTIPR 569 (806)
Q Consensus 557 ~L~~~~~l~~lp~ 569 (806)
++++|.+ ..+|.
T Consensus 120 dlS~N~f-~~~Pl 131 (1081)
T KOG0618|consen 120 DLSFNHF-GPIPL 131 (1081)
T ss_pred ccchhcc-CCCch
Confidence 9999985 55554
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=1.2e-15 Score=134.88 Aligned_cols=162 Identities=24% Similarity=0.388 Sum_probs=133.9
Q ss_pred cccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhh
Q 037138 469 KIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELK 548 (806)
Q Consensus 469 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~ 548 (806)
++..++...++++++.|-+++|.++.+|+. +..+.+|++|++++| -++.+|.+++.++.|+.|+++-|.+..+|.+|+
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred cHhhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 345566667888899999999999999887 788999999999999 688899999999999999999999999999999
Q ss_pred cCCCCcEEecCCCcccc-ccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhh
Q 037138 549 ALVNLKYLNLEHSRYLH-TIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFA 627 (806)
Q Consensus 549 ~L~~L~~L~L~~~~~l~-~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 627 (806)
.++.|+.||+++|+... .+|.+ |-.++.|+.|+++.|.+.- +| ...+.|++|+.|.+..|.+..
T Consensus 100 s~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dndfe~-lp-------------~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFEI-LP-------------PDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred CCchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCccc-CC-------------hhhhhhcceeEEeeccCchhh
Confidence 99999999999997544 47766 6678999999999987753 33 578999999999998877654
Q ss_pred HHHhhhchhhccccccceeccCCCCCcccccccccccccceEeecccc
Q 037138 628 LQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCR 675 (806)
Q Consensus 628 ~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 675 (806)
++. .++.+..|++|++.+|.
T Consensus 165 lpk----------------------------eig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 165 LPK----------------------------EIGDLTRLRELHIQGNR 184 (264)
T ss_pred CcH----------------------------HHHHHHHHHHHhcccce
Confidence 431 35556777777777764
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=3.4e-13 Score=154.87 Aligned_cols=139 Identities=22% Similarity=0.324 Sum_probs=101.8
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
..+.+....+..+|... .++|+.|++++|.++.+|...+ ++|++|++++| .+..+|..+. .+|+.|+|++|.+
T Consensus 181 ~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 181 TELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred eEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECcCCcc
Confidence 45666666777776532 3578999999999988887644 58999999999 5567787654 4799999999999
Q ss_pred cccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeE
Q 037138 541 RELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTI 620 (806)
Q Consensus 541 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 620 (806)
..+|..+. .+|+.|++++|+ +..+|.. +. ++|+.|++++|.+.. +| ..+. ++|+.|++
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l~--~sL~~L~Ls~N~Lt~-LP-------------~~lp--~sL~~L~L 311 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHNK-ISCLPEN-LP--EELRYLSVYDNSIRT-LP-------------AHLP--SGITHLNV 311 (754)
T ss_pred CcCChhHh--CCCCEEECcCCc-cCccccc-cC--CCCcEEECCCCcccc-Cc-------------ccch--hhHHHHHh
Confidence 99988764 589999999887 5678875 32 589999999988764 23 1111 35667777
Q ss_pred EecchhhH
Q 037138 621 ALKSFFAL 628 (806)
Q Consensus 621 ~~~~~~~~ 628 (806)
+.|.+..+
T Consensus 312 s~N~Lt~L 319 (754)
T PRK15370 312 QSNSLTAL 319 (754)
T ss_pred cCCccccC
Confidence 77766543
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.39 E-value=1.2e-14 Score=128.62 Aligned_cols=151 Identities=23% Similarity=0.362 Sum_probs=130.0
Q ss_pred EEEeeecccccccCC-CCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCC
Q 037138 461 RRISLMRNKIEKLSD-TPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTS 539 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~ 539 (806)
.++.+++|.+.-+|. ..++.+|++|++++|+++.+|.. ++.++.|+.|+++-| ....+|..|+.++-|+.|||++|+
T Consensus 36 TrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs~p~levldltynn 113 (264)
T KOG0617|consen 36 TRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTYNN 113 (264)
T ss_pred hhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCCCchhhhhhccccc
Confidence 556777888777654 47889999999999999999887 889999999999998 678899999999999999999998
Q ss_pred cc--ccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCe
Q 037138 540 IR--ELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNV 617 (806)
Q Consensus 540 l~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 617 (806)
+. .+|..|..++-|+.|+++.|.| ..+|+. ++++++||.|.+..|.+.. ++.+++.|..|+.
T Consensus 114 l~e~~lpgnff~m~tlralyl~dndf-e~lp~d-vg~lt~lqil~lrdndll~--------------lpkeig~lt~lre 177 (264)
T KOG0617|consen 114 LNENSLPGNFFYMTTLRALYLGDNDF-EILPPD-VGKLTNLQILSLRDNDLLS--------------LPKEIGDLTRLRE 177 (264)
T ss_pred cccccCCcchhHHHHHHHHHhcCCCc-ccCChh-hhhhcceeEEeeccCchhh--------------CcHHHHHHHHHHH
Confidence 87 7999999999999999999984 778888 8999999999999887662 3378899999999
Q ss_pred eeEEecchhhHH
Q 037138 618 LTIALKSFFALQ 629 (806)
Q Consensus 618 L~l~~~~~~~~~ 629 (806)
|++.+|.+..++
T Consensus 178 lhiqgnrl~vlp 189 (264)
T KOG0617|consen 178 LHIQGNRLTVLP 189 (264)
T ss_pred HhcccceeeecC
Confidence 999988776543
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.38 E-value=2e-12 Score=147.61 Aligned_cols=237 Identities=19% Similarity=0.210 Sum_probs=109.0
Q ss_pred EeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccc
Q 037138 463 ISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRE 542 (806)
Q Consensus 463 ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~ 542 (806)
+.+..+.+..+|... .++|+.|.+.+|+++.+|. .+++|++|++++| .+..+|.. .++|+.|++++|.++.
T Consensus 206 LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~L~~ 276 (788)
T PRK15387 206 LNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNPLTH 276 (788)
T ss_pred EEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCC----CCCCCcEEEecCC-ccCcccCc---ccccceeeccCCchhh
Confidence 344444444444321 1345555555555555443 1345555555555 33344432 2345555555555554
Q ss_pred cChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCC-----CccccCCccchHHHhcCC-CCCC
Q 037138 543 LPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPL-----DSILFGGCESLVEELISL-KHLN 616 (806)
Q Consensus 543 lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~L-~~L~ 616 (806)
+|... .+|+.|++++|+ +..+|.. +++|+.|++++|.+.+. |. ....+.+ ..+..+..+ .+|+
T Consensus 277 Lp~lp---~~L~~L~Ls~N~-Lt~LP~~----p~~L~~LdLS~N~L~~L-p~lp~~L~~L~Ls~--N~L~~LP~lp~~Lq 345 (788)
T PRK15387 277 LPALP---SGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLASL-PALPSELCKLWAYN--NQLTSLPTLPSGLQ 345 (788)
T ss_pred hhhch---hhcCEEECcCCc-ccccccc----ccccceeECCCCccccC-CCCccccccccccc--Cccccccccccccc
Confidence 44321 334455555554 3344431 24455555555544431 10 0000000 000011111 3678
Q ss_pred eeeEEecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCcc------ccceeeecccCC
Q 037138 617 VLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLE------EFKKVMIDFCIK 690 (806)
Q Consensus 617 ~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~------~L~~L~l~~c~~ 690 (806)
.|+++.|.+..++.. ...+.. |...+|.... ++.+ ..+|+.|++++|.... .|+.|+++++.
T Consensus 346 ~LdLS~N~Ls~LP~l------p~~L~~--L~Ls~N~L~~-LP~l--~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~- 413 (788)
T PRK15387 346 ELSVSDNQLASLPTL------PSELYK--LWAYNNRLTS-LPAL--PSGLKELIVSGNRLTSLPVLPSELKELMVSGNR- 413 (788)
T ss_pred eEecCCCccCCCCCC------Ccccce--ehhhcccccc-Cccc--ccccceEEecCCcccCCCCcccCCCEEEccCCc-
Confidence 888888877655421 112222 2222332221 1111 2467888888775332 25566666543
Q ss_pred cCCCCccccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceecccc
Q 037138 691 LREVTWLVFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRA 746 (806)
Q Consensus 691 l~~~~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~ 746 (806)
++.+|.+ +.+|+.|++++|.+ ..+|..+ ..+++|+.|+|++
T Consensus 414 LssIP~l--~~~L~~L~Ls~NqL----------t~LP~sl---~~L~~L~~LdLs~ 454 (788)
T PRK15387 414 LTSLPML--PSGLLSLSVYRNQL----------TRLPESL---IHLSSETTVNLEG 454 (788)
T ss_pred CCCCCcc--hhhhhhhhhccCcc----------cccChHH---hhccCCCeEECCC
Confidence 3333321 24566677777665 3566433 3445777777776
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.35 E-value=2.9e-12 Score=146.18 Aligned_cols=243 Identities=19% Similarity=0.162 Sum_probs=158.2
Q ss_pred ccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEEecCC
Q 037138 481 HLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYLNLEH 560 (806)
Q Consensus 481 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~ 560 (806)
+-..|+++.+.++.+|+.+. ++|+.|++++| .+..+|.. +++|++|++++|.++.+|.. .++|+.|++++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~---~~L~~L~L~~N-~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP---AHITTLVIPDN-NLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh---cCCCEEEccCC-cCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence 34578899999998887643 48999999999 56678853 58999999999999999864 46899999999
Q ss_pred CccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhchhhccc
Q 037138 561 SRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSHELQNC 640 (806)
Q Consensus 561 ~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~ 640 (806)
|. +..+|.. .++|+.|++++|.+.. +| ..+++|+.|+++.|.+..++.. ...
T Consensus 272 N~-L~~Lp~l----p~~L~~L~Ls~N~Lt~-LP----------------~~p~~L~~LdLS~N~L~~Lp~l------p~~ 323 (788)
T PRK15387 272 NP-LTHLPAL----PSGLCKLWIFGNQLTS-LP----------------VLPPGLQELSVSDNQLASLPAL------PSE 323 (788)
T ss_pred Cc-hhhhhhc----hhhcCEEECcCCcccc-cc----------------ccccccceeECCCCccccCCCC------ccc
Confidence 97 5677752 3678999999998764 23 1246799999999988765431 122
Q ss_pred cccceeccCCCCCcccccccccccccceEeeccccCcc------ccceeeecccCCcCCCCccccCCCcceEeeecCccc
Q 037138 641 TKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLE------EFKKVMIDFCIKLREVTWLVFAPNLKSIHIANCHFM 714 (806)
Q Consensus 641 ~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~------~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~~~~~ 714 (806)
+..+. ..+|.... ++.+ ..+|+.|+|++|.... .|+.|.++++ .+..++.+ .++|+.|+|++|.+
T Consensus 324 L~~L~--Ls~N~L~~-LP~l--p~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N-~L~~LP~l--~~~L~~LdLs~N~L- 394 (788)
T PRK15387 324 LCKLW--AYNNQLTS-LPTL--PSGLQELSVSDNQLASLPTLPSELYKLWAYNN-RLTSLPAL--PSGLKELIVSGNRL- 394 (788)
T ss_pred ccccc--cccCcccc-cccc--ccccceEecCCCccCCCCCCCcccceehhhcc-ccccCccc--ccccceEEecCCcc-
Confidence 23333 33332221 1111 2478899998886433 2556666553 33334322 35788888888876
Q ss_pred hhhhcccccCccccccCCCCcccccceecccccccccccccC----------CCCCchHHHHHccCCCCCCCCCCCCccc
Q 037138 715 QEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKSIYWN----------ALPSHIWKKLIMGCAGLKKLPLDSNSRK 784 (806)
Q Consensus 715 ~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~~~----------~~~~~~L~~ll~~c~~L~~L~l~~n~~~ 784 (806)
..+|.. .++|+.|+++++ .|+.++.. .+.+..+..-+.++++|+.|++++|.+.
T Consensus 395 ---------t~LP~l------~s~L~~LdLS~N-~LssIP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 395 ---------TSLPVL------PSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred ---------cCCCCc------ccCCCEEEccCC-cCCCCCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCC
Confidence 344421 247778888773 35544421 1111212111567788888888888765
Q ss_pred cc
Q 037138 785 EH 786 (806)
Q Consensus 785 ~~ 786 (806)
+.
T Consensus 459 ~~ 460 (788)
T PRK15387 459 ER 460 (788)
T ss_pred ch
Confidence 43
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.33 E-value=1.2e-13 Score=152.57 Aligned_cols=246 Identities=22% Similarity=0.297 Sum_probs=155.7
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
+++....|.+..+...+.-.+|++++++.|++..+| .+++.+.+|..|+..+| .+..+|..+....+|++|.+..|.+
T Consensus 222 ~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~nel 299 (1081)
T KOG0618|consen 222 TALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYNEL 299 (1081)
T ss_pred heeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhhhh
Confidence 555555555554333355568888889988888888 77888899999999888 5577888888888899998888888
Q ss_pred cccChhhhcCCCCcEEecCCCccccccccccccCCCC-CcEEEeecccCCCCCCCCcccc-----------CCccchHHH
Q 037138 541 RELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSM-LHVLRMVNCDYSGKIPLDSILF-----------GGCESLVEE 608 (806)
Q Consensus 541 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 608 (806)
+.+|.....+++|++|+|..|+ +..+|...+..+.. |+.|+.+.|.+......+.... .-.+.....
T Consensus 300 ~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~ 378 (1081)
T KOG0618|consen 300 EYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV 378 (1081)
T ss_pred hhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh
Confidence 8888888888899999998887 67788765544433 5555555554432211000000 001122345
Q ss_pred hcCCCCCCeeeEEecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCcc---------c
Q 037138 609 LISLKHLNVLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLE---------E 679 (806)
Q Consensus 609 l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~---------~ 679 (806)
+-+..+|+.|++++|.+..++. ..+.++..|++|+|++|.... .
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpa---------------------------s~~~kle~LeeL~LSGNkL~~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPA---------------------------SKLRKLEELEELNLSGNKLTTLPDTVANLGR 431 (1081)
T ss_pred hccccceeeeeecccccccCCH---------------------------HHHhchHHhHHHhcccchhhhhhHHHHhhhh
Confidence 5566667777777665544331 134445555555555554211 1
Q ss_pred cceeeecccCCcCCCCccccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceeccccccc
Q 037138 680 FKKVMIDFCIKLREVTWLVFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPS 749 (806)
Q Consensus 680 L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~ 749 (806)
|+.|...+. .+...|.+..++.|+.+|++.|++..- .+|. .. .-|+|++|++++.++
T Consensus 432 L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS~N~L~~~--------~l~~---~~-p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 432 LHTLRAHSN-QLLSFPELAQLPQLKVLDLSCNNLSEV--------TLPE---AL-PSPNLKYLDLSGNTR 488 (1081)
T ss_pred hHHHhhcCC-ceeechhhhhcCcceEEecccchhhhh--------hhhh---hC-CCcccceeeccCCcc
Confidence 333322221 333455778899999999998887332 2332 11 127999999998654
No 20
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.32 E-value=2.1e-10 Score=140.48 Aligned_cols=273 Identities=18% Similarity=0.211 Sum_probs=172.7
Q ss_pred CCccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC-cccHHHHHHHHHHHh
Q 037138 134 EPTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK-DMQLERIQEKIGERI 212 (806)
Q Consensus 134 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l 212 (806)
.+.+|-|+.-.+.+-+ ....+++.|+|++|.||||++.++.... . .++|+++.. +.+...+...++..+
T Consensus 13 ~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 13 LHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred ccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHHH
Confidence 3566777765555532 2467899999999999999999988643 2 589999864 446666666666666
Q ss_pred CCCC---------------CCCHHHHHHHHHHHhC--CCcEEEEEecCCCccC--c-ccccccCCC-CCCcEEEEecCC-
Q 037138 213 GLLE---------------NRSLEERASGIFKILS--KKKFLLLLDDVWERID--L-TKVGIPFPS-KNTSKVVFTTRL- 270 (806)
Q Consensus 213 ~~~~---------------~~~~~~~~~~l~~~l~--~k~~LlvlDdv~~~~~--~-~~~~~~~~~-~~~s~iivTtr~- 270 (806)
.... ..+.......+...+. +.+++|||||+....+ . +.+...+.. ..+.++|||||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 3111 0122223333333332 6799999999965321 1 223333334 567788899998
Q ss_pred -------------ceecc----cCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhh--hcCCCCHH
Q 037138 271 -------------IFKVE----CLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITTG--LGCKKSQE 331 (806)
Q Consensus 271 -------------~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g--~~~~~~~~ 331 (806)
...+. +|+.+|+..+|....+..- -.+....|.+.|+|.|+++..++ +......
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~- 235 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQNNSS- 235 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-
Confidence 12344 8999999999987765421 14567899999999999999888 2221110
Q ss_pred HHHHHHHHHhhcccCCCCC-ccchhhhhhh-chhcCChhhHHHHHhhhcCCCCCCcccHHHHHHHHHHcCCccCCCchhH
Q 037138 332 EWSYAIEILRRSASELPGM-GKEVYPLLKF-SYDSLSSEIFRSCLLYCSLFPEDCKIDKIELIECWIGEGFLNGYEGAEV 409 (806)
Q Consensus 332 ~w~~~l~~l~~~~~~~~~~-~~~~~~~l~~-sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~ 409 (806)
....... ..+. ...+...+.- .|+.||+ ..+..++..|+++ .++.+ +... +..
T Consensus 236 -~~~~~~~-------~~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~-l~~~-----l~~------- 290 (903)
T PRK04841 236 -LHDSARR-------LAGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDA-LIVR-----VTG------- 290 (903)
T ss_pred -hhhhhHh-------hcCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHH-HHHH-----HcC-------
Confidence 0011111 1111 1235554433 3889999 7899999999987 33322 2221 111
Q ss_pred HHhHHHHHHHHHHccccee-e--CCCcEEehHHHHHHHHHHH
Q 037138 410 HNQGYYIIGILVHACLLEE-V--GSDHVRMHDAIRDMTLWIA 448 (806)
Q Consensus 410 ~~~~~~~~~~L~~~sll~~-~--~~~~~~mHdlv~d~a~~~~ 448 (806)
.+.+...+++|.+.+++.. . +...|++|++++++.+...
T Consensus 291 ~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 1234567899999999653 3 2347899999999988754
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.24 E-value=1.2e-11 Score=142.30 Aligned_cols=177 Identities=22% Similarity=0.304 Sum_probs=124.4
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
+.+.+.+|.+..+|... +++|++|++++|.++.+|..+. .+|+.|+|++| .+..+|..+. .+|++|++++|++
T Consensus 202 ~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N~L 274 (754)
T PRK15370 202 TTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATLP---DTIQEMELSIN-RITELPERLP--SALQSLDLFHNKI 274 (754)
T ss_pred cEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhhh---ccccEEECcCC-ccCcCChhHh--CCCCEEECcCCcc
Confidence 67888899999887643 4699999999999998887543 47999999999 5667887765 5899999999999
Q ss_pred cccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeE
Q 037138 541 RELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTI 620 (806)
Q Consensus 541 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 620 (806)
+.+|..+. ++|++|++++|+ +..+|.. + .++|+.|++++|.+.. +| ..+ .++|+.|++
T Consensus 275 ~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-l--p~sL~~L~Ls~N~Lt~-LP-------------~~l--~~sL~~L~L 332 (754)
T PRK15370 275 SCLPENLP--EELRYLSVYDNS-IRTLPAH-L--PSGITHLNVQSNSLTA-LP-------------ETL--PPGLKTLEA 332 (754)
T ss_pred CccccccC--CCCcEEECCCCc-cccCccc-c--hhhHHHHHhcCCcccc-CC-------------ccc--cccceeccc
Confidence 99998764 589999999997 5678865 3 2579999999998874 33 111 257888888
Q ss_pred EecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeecccc
Q 037138 621 ALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCR 675 (806)
Q Consensus 621 ~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 675 (806)
+.|.+..++. .+...++.+ +..+|........+ .++|+.|+|++|.
T Consensus 333 s~N~Lt~LP~-----~l~~sL~~L--~Ls~N~L~~LP~~l--p~~L~~LdLs~N~ 378 (754)
T PRK15370 333 GENALTSLPA-----SLPPELQVL--DVSKNQITVLPETL--PPTITTLDVSRNA 378 (754)
T ss_pred cCCccccCCh-----hhcCcccEE--ECCCCCCCcCChhh--cCCcCEEECCCCc
Confidence 8887665432 122233333 33333222111122 2567777777764
No 22
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.24 E-value=9.2e-10 Score=120.77 Aligned_cols=278 Identities=17% Similarity=0.111 Sum_probs=164.2
Q ss_pred CCccccchHHHHHHHHHhcC----CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHH
Q 037138 134 EPTIVGLNSTLEKVWRCLGE----ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIG 209 (806)
Q Consensus 134 ~~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 209 (806)
++.++||+++++++...+.+ .....+.|+|++|+|||++++.++++. ......-.++++++....+...++..|+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 45789999999999988733 345668899999999999999999987 2222223567777777778889999999
Q ss_pred HHhCCCC----CCCHHHHHHHHHHHhC--CCcEEEEEecCCCcc---C---cccccccCCCCCCcE--EEEecCC-----
Q 037138 210 ERIGLLE----NRSLEERASGIFKILS--KKKFLLLLDDVWERI---D---LTKVGIPFPSKNTSK--VVFTTRL----- 270 (806)
Q Consensus 210 ~~l~~~~----~~~~~~~~~~l~~~l~--~k~~LlvlDdv~~~~---~---~~~~~~~~~~~~~s~--iivTtr~----- 270 (806)
.++.... ..+.++..+.+.+.+. +++.+||||+++... . +..+........+++ +|.++..
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhh
Confidence 9987521 3456667777777774 456899999998632 1 222222222222333 4444433
Q ss_pred -------------ceecccCChHHHHHHHHhhhCC---CccCCCCChHHHHHHHHHHhCCchHHHHHhh----h---c--
Q 037138 271 -------------IFKVECLRDKEAWELFLDKVGE---ETLDSHLDIPKLAHTLAKECGGLPLALITTG----L---G-- 325 (806)
Q Consensus 271 -------------~~~l~~L~~~e~~~lf~~~~~~---~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g----~---~-- 325 (806)
.+.+++++.++..+++...+.. ...-.+..++.+++......|..+.|+.++- . .
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~ 267 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGS 267 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 5689999999999999887632 1111112223333434333566777776543 1 1
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCccchhhhhhhchhcCChhhHHHHHhhhc-CCCC-CCcccHHHHHHH--HHHcCCc
Q 037138 326 CKKSQEEWSYAIEILRRSASELPGMGKEVYPLLKFSYDSLSSEIFRSCLLYCS-LFPE-DCKIDKIELIEC--WIGEGFL 401 (806)
Q Consensus 326 ~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~-~fp~-~~~i~~~~li~~--Wia~g~i 401 (806)
..-+.+....+.+.... ....-.+..||. +.|..+..++ .... ...+...++... .+++.+-
T Consensus 268 ~~I~~~~v~~a~~~~~~-------------~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 268 RKVTEEDVRKAYEKSEI-------------VHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred CCcCHHHHHHHHHHHHH-------------HHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 12356666666654421 123445788998 4343322222 2211 123444444432 1221110
Q ss_pred cCCCchhHHHhHHHHHHHHHHcccceee
Q 037138 402 NGYEGAEVHNQGYYIIGILVHACLLEEV 429 (806)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~L~~~sll~~~ 429 (806)
.. .-.......+++.|...+++...
T Consensus 334 ~~---~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 334 YE---PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CC---cCcHHHHHHHHHHHHhcCCeEEE
Confidence 00 00123345688899999998753
No 23
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.23 E-value=1.5e-09 Score=112.52 Aligned_cols=166 Identities=16% Similarity=0.190 Sum_probs=109.8
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHH--
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE-NRSLEERASGIFKI-- 230 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~l~~~-- 230 (806)
...+++.|+|++|+||||+++.+++.. .. ..+ ..+|+ +....+..+++..|+..++... ..+.......+...
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 446689999999999999999999987 21 211 22333 3344577889999999887654 23333333344332
Q ss_pred ---hCCCcEEEEEecCCCcc--CcccccccCC---C-CCCcEEEEecCC--------------------ceecccCChHH
Q 037138 231 ---LSKKKFLLLLDDVWERI--DLTKVGIPFP---S-KNTSKVVFTTRL--------------------IFKVECLRDKE 281 (806)
Q Consensus 231 ---l~~k~~LlvlDdv~~~~--~~~~~~~~~~---~-~~~s~iivTtr~--------------------~~~l~~L~~~e 281 (806)
..+++.++|+||++... .++.+..... . .....|++|... .+.+++++.+|
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 26788999999998643 3444432211 1 222344555542 46799999999
Q ss_pred HHHHHHhhhCCCccCCCC-ChHHHHHHHHHHhCCchHHHHHhh
Q 037138 282 AWELFLDKVGEETLDSHL-DIPKLAHTLAKECGGLPLALITTG 323 (806)
Q Consensus 282 ~~~lf~~~~~~~~~~~~~-~~~~~~~~i~~~c~GlPlai~~~g 323 (806)
..+++...+......... --.+..+.|++.++|.|..|..++
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~ 239 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILC 239 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHH
Confidence 999998776432211111 235789999999999999998888
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.23 E-value=7e-12 Score=146.40 Aligned_cols=135 Identities=24% Similarity=0.345 Sum_probs=106.7
Q ss_pred cCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCc-ccccCc-ccCCCCCCCEEEecCC-CccccChhhhc
Q 037138 473 LSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGF-LTKLRP-GISKLVSLQYLNLSKT-SIRELPKELKA 549 (806)
Q Consensus 473 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~-~~~lp~-~i~~l~~L~~L~Ls~n-~l~~lp~~i~~ 549 (806)
.|...+....|...+.+|.+..++.. ..++.|++|-+.+|.. ...++. .|..++.|++|||++| .+.++|.+|++
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred cccccchhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 45555667778888888877666653 3456899999999852 444443 4778999999999988 78899999999
Q ss_pred CCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecc
Q 037138 550 LVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKS 624 (806)
Q Consensus 550 L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 624 (806)
|.+||+|+++++. +..+|.+ +++|.+|.+|++..+.....+| .....|.+|++|.+....
T Consensus 594 Li~LryL~L~~t~-I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~-------------~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 594 LVHLRYLDLSDTG-ISHLPSG-LGNLKKLIYLNLEVTGRLESIP-------------GILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhhhcccccCCC-ccccchH-HHHHHhhheecccccccccccc-------------chhhhcccccEEEeeccc
Confidence 9999999999998 6899998 9999999999999876554332 456668899999887544
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.21 E-value=3.1e-13 Score=135.47 Aligned_cols=131 Identities=21% Similarity=0.290 Sum_probs=103.4
Q ss_pred CccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecC-CCccccChh-hhcCCCCcEEe
Q 037138 480 PHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSK-TSIRELPKE-LKALVNLKYLN 557 (806)
Q Consensus 480 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~-n~l~~lp~~-i~~L~~L~~L~ 557 (806)
+....+.|..|.|+.+|+..|+.+++||.||||+|.+...-|..|.++.+|..|-+.+ |+|+.+|+. |++|..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3456788899999999999999999999999999977777788999999988887766 899999974 78999999999
Q ss_pred cCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecc
Q 037138 558 LEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKS 624 (806)
Q Consensus 558 L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 624 (806)
+.-|+ +..++.+.+..+++|..|.+..|.+...-. ..+..+..++.+.+..|.
T Consensus 147 lNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~-------------~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 147 LNANH-INCIRQDALRDLPSLSLLSLYDNKIQSICK-------------GTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred cChhh-hcchhHHHHHHhhhcchhcccchhhhhhcc-------------ccccchhccchHhhhcCc
Confidence 98887 677777778999999999998887653211 244555566666555444
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.18 E-value=1.5e-11 Score=131.12 Aligned_cols=139 Identities=24% Similarity=0.221 Sum_probs=85.9
Q ss_pred CCCccccccccccchhcc----hhHhhccCCcccEEEccCCCcc------cccCcccCCCCCCCEEEecCCCcc-ccChh
Q 037138 478 TCPHLLSLFPNINRLKTI----ARRFFDFMPSLTVLNLSNNGFL------TKLRPGISKLVSLQYLNLSKTSIR-ELPKE 546 (806)
Q Consensus 478 ~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~~~~~------~~lp~~i~~l~~L~~L~Ls~n~l~-~lp~~ 546 (806)
.+++|+.|.++++.++.. ....+...+.|+.|+++++... ..++..+..+++|++|++++|.+. ..+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 445578888888765321 1223556677888888877433 123445666778888888888776 44445
Q ss_pred hhcCCC---CcEEecCCCcccc----ccccccccCC-CCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCee
Q 037138 547 LKALVN---LKYLNLEHSRYLH----TIPRQLICSF-SMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVL 618 (806)
Q Consensus 547 i~~L~~---L~~L~L~~~~~l~----~lp~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 618 (806)
+..+.+ |++|++++|.+.. .+... +..+ ++|+.|++++|.+.+.. .......+..+++|+.|
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~---------~~~~~~~~~~~~~L~~L 170 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGAS---------CEALAKALRANRDLKEL 170 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchH---------HHHHHHHHHhCCCcCEE
Confidence 555544 8888888876431 12222 4455 77888888888776421 11233456667778888
Q ss_pred eEEecchh
Q 037138 619 TIALKSFF 626 (806)
Q Consensus 619 ~l~~~~~~ 626 (806)
+++.|.+.
T Consensus 171 ~l~~n~l~ 178 (319)
T cd00116 171 NLANNGIG 178 (319)
T ss_pred ECcCCCCc
Confidence 88777664
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.15 E-value=1.2e-08 Score=110.79 Aligned_cols=278 Identities=15% Similarity=0.105 Sum_probs=164.5
Q ss_pred CccccchHHHHHHHHHhcC----CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCC---CeEEEEEeCCcccHHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLGE----ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDF---DVVIWVVVSKDMQLERIQEK 207 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F---~~~~wv~~s~~~~~~~~~~~ 207 (806)
+.++||++++++|..++.+ .....+.|+|++|+|||++++.+++......... -..+|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 5789999999999998853 4456899999999999999999998752111111 24678888777778889999
Q ss_pred HHHHhC---CCC---CCCHHHHHHHHHHHhC--CCcEEEEEecCCCcc-C----ccccccc--CCCC--CCcEEEEecCC
Q 037138 208 IGERIG---LLE---NRSLEERASGIFKILS--KKKFLLLLDDVWERI-D----LTKVGIP--FPSK--NTSKVVFTTRL 270 (806)
Q Consensus 208 i~~~l~---~~~---~~~~~~~~~~l~~~l~--~k~~LlvlDdv~~~~-~----~~~~~~~--~~~~--~~s~iivTtr~ 270 (806)
|++++. ... ..+..+..+.+.+.+. +++++||||+++... . +..+... .... ....+|.+|..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 999883 221 2344555566666663 567899999998652 1 1222211 1111 22344444432
Q ss_pred ------------------ceecccCChHHHHHHHHhhhCC--CccCCCCChHHHHHHHHHHhCCchHH-HHHhh------
Q 037138 271 ------------------IFKVECLRDKEAWELFLDKVGE--ETLDSHLDIPKLAHTLAKECGGLPLA-LITTG------ 323 (806)
Q Consensus 271 ------------------~~~l~~L~~~e~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~GlPla-i~~~g------ 323 (806)
.+.+++++.+|..+++..++.. ......++..+....++....|.|-. +.++-
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 4789999999999999887631 11112223334455566677788743 33221
Q ss_pred hc---CCCCHHHHHHHHHHHhhcccCCCCCccchhhhhhhchhcCChhhHHHHHhhhcCC--CCCCcccHHHHHHHHH--
Q 037138 324 LG---CKKSQEEWSYAIEILRRSASELPGMGKEVYPLLKFSYDSLSSEIFRSCLLYCSLF--PEDCKIDKIELIECWI-- 396 (806)
Q Consensus 324 ~~---~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~f--p~~~~i~~~~li~~Wi-- 396 (806)
.. ..-+.+..+.+.+.+.. ....-++..||. +.|..+..++.. .++..+...++...+-
T Consensus 255 ~~~~~~~it~~~v~~a~~~~~~-------------~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 255 EREGAERVTEDHVEKAQEKIEK-------------DRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHcCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 11 12355555555544321 223345678887 545433333211 1334455666665332
Q ss_pred HcCCccCCCchhHHHhHHHHHHHHHHcccceee
Q 037138 397 GEGFLNGYEGAEVHNQGYYIIGILVHACLLEEV 429 (806)
Q Consensus 397 a~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~ 429 (806)
++.+ .. ..-.......++..|...+++...
T Consensus 321 ~~~~-~~--~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 321 CEDI-GV--DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHhc-CC--CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 1211 11 112235566778899999998864
No 28
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.14 E-value=1.3e-10 Score=117.68 Aligned_cols=180 Identities=20% Similarity=0.230 Sum_probs=100.4
Q ss_pred cccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHH----------
Q 037138 137 IVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQE---------- 206 (806)
Q Consensus 137 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~---------- 206 (806)
|+||++++++|.+++..+....+.|+|+.|+|||+|++.+.+.. . ...+ .++|+..........+..
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~-~-~~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL-K-EKGY-KVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC-T---EE-CCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh-h-hcCC-cEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 68999999999999987778899999999999999999999986 2 1122 344554444332221111
Q ss_pred ---HHHHHhCCCC--------CCCHHHHHHHHHHHh--CCCcEEEEEecCCCcc-Ccc-------ccc---ccCCC-CCC
Q 037138 207 ---KIGERIGLLE--------NRSLEERASGIFKIL--SKKKFLLLLDDVWERI-DLT-------KVG---IPFPS-KNT 261 (806)
Q Consensus 207 ---~i~~~l~~~~--------~~~~~~~~~~l~~~l--~~k~~LlvlDdv~~~~-~~~-------~~~---~~~~~-~~~ 261 (806)
.+...+.... ..........+.+.+ .+++++||+||+.... ... .+. ..... .+.
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 1222221110 111222233333333 3456999999997654 111 111 11222 334
Q ss_pred cEEEEecCC------------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHH
Q 037138 262 SKVVFTTRL------------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALIT 321 (806)
Q Consensus 262 s~iivTtr~------------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 321 (806)
+.|+++|.. .+.+++|+.+++++++...+... ... +.-.+..++|...+||.|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 455555542 68999999999999999876433 111 12255679999999999988754
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=5.2e-11 Score=111.47 Aligned_cols=141 Identities=29% Similarity=0.347 Sum_probs=54.6
Q ss_pred ecccccccCCCCCCCccccccccccchhcchhHhhc-cCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccC
Q 037138 466 MRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFD-FMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELP 544 (806)
Q Consensus 466 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp 544 (806)
..+.|+..+...++.+++.|++.+|.|+.+.. ++ .+.+|++|+|++| .+..++ .+..+++|++|++++|.|+.++
T Consensus 5 t~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 5 TANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp -------------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-C
T ss_pred cccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccc
Confidence 34556666667778889999999999887754 44 5789999999999 566665 6788999999999999999997
Q ss_pred hhh-hcCCCCcEEecCCCcccccccc-ccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEE
Q 037138 545 KEL-KALVNLKYLNLEHSRYLHTIPR-QLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIA 621 (806)
Q Consensus 545 ~~i-~~L~~L~~L~L~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 621 (806)
..+ ..+++|++|++++|++ ..+.. ..+..+++|+.|++.+|++... + ..-...+..+|+|+.||-.
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I-~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~---------~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKI-SDLNELEPLSSLPKLRVLSLEGNPVCEK-K---------NYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-T---------THHHHHHHH-TT-SEETTE
T ss_pred cchHHhCCcCCEEECcCCcC-CChHHhHHHHcCCCcceeeccCCcccch-h---------hHHHHHHHHcChhheeCCE
Confidence 766 4799999999999974 43322 2267899999999999988743 1 2334567788888888754
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.11 E-value=6.6e-12 Score=126.11 Aligned_cols=126 Identities=25% Similarity=0.280 Sum_probs=107.8
Q ss_pred EEEeeecccccccCCC--CCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCc-ccCCCCCCCEEEecC
Q 037138 461 RRISLMRNKIEKLSDT--PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRP-GISKLVSLQYLNLSK 537 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~l~~L~~L~Ls~ 537 (806)
--+.+..|.|+.+|.. ..+++||.|+|++|.|+.|.+..|.+++.|..|-+-+|+.+..+|. .|++|..|+-|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 4567788999999865 7899999999999999999999999999998887776446777775 688999999999999
Q ss_pred CCccccC-hhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeeccc
Q 037138 538 TSIRELP-KELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCD 587 (806)
Q Consensus 538 n~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~ 587 (806)
|++..++ ..+..|++|..|.+..|. ...++.+.+..+.+++++.+..|.
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 9999665 468999999999999997 688888778899999999887766
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.07 E-value=1.1e-10 Score=124.36 Aligned_cols=249 Identities=21% Similarity=0.173 Sum_probs=140.3
Q ss_pred CCCCccccccccccchhc------chhHhhccCCcccEEEccCCCcccccCcccCCCCC---CCEEEecCCCcc-----c
Q 037138 477 PTCPHLLSLFPNINRLKT------IARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVS---LQYLNLSKTSIR-----E 542 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~---L~~L~Ls~n~l~-----~ 542 (806)
...++++.|+++++.+.. .....+..+++|+.|++++|.+....+..+..+.+ |++|++++|.+. .
T Consensus 48 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~ 127 (319)
T cd00116 48 RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRL 127 (319)
T ss_pred hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHH
Confidence 344566777776665441 12234667888999999888655455555555544 999999988776 2
Q ss_pred cChhhhcC-CCCcEEecCCCcccc----ccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCe
Q 037138 543 LPKELKAL-VNLKYLNLEHSRYLH----TIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNV 617 (806)
Q Consensus 543 lp~~i~~L-~~L~~L~L~~~~~l~----~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 617 (806)
++..+..+ ++|+.|++++|.+.. .++.. +..+++|++|++++|.+.+. ........+..+++|+.
T Consensus 128 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~---------~~~~l~~~l~~~~~L~~ 197 (319)
T cd00116 128 LAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGIGDA---------GIRALAEGLKANCNLEV 197 (319)
T ss_pred HHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCCchH---------HHHHHHHHHHhCCCCCE
Confidence 34456666 888999999887542 23332 56677899999988877642 11123345566678888
Q ss_pred eeEEecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCCC-c
Q 037138 618 LTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVT-W 696 (806)
Q Consensus 618 L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~-~ 696 (806)
|+++.|.+...... .+. ..+..+++|+.|++++|.... ..+ ..+. .
T Consensus 198 L~L~~n~i~~~~~~----~l~-------------------~~~~~~~~L~~L~ls~n~l~~----~~~------~~l~~~ 244 (319)
T cd00116 198 LDLNNNGLTDEGAS----ALA-------------------ETLASLKSLEVLNLGDNNLTD----AGA------AALASA 244 (319)
T ss_pred EeccCCccChHHHH----HHH-------------------HHhcccCCCCEEecCCCcCch----HHH------HHHHHH
Confidence 88887766432210 000 124456778888888774221 000 0000 0
Q ss_pred c-ccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceecccccccccccccCCCCCchHHHHHccC-CCCC
Q 037138 697 L-VFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKSIYWNALPSHIWKKLIMGC-AGLK 774 (806)
Q Consensus 697 l-~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~ll~~c-~~L~ 774 (806)
+ ...+.|++|++++|.+...- ...+.. .+..+++|+++++++ ..+..-+ ...+...+... +.|+
T Consensus 245 ~~~~~~~L~~L~l~~n~i~~~~-----~~~l~~---~~~~~~~L~~l~l~~-N~l~~~~-----~~~~~~~~~~~~~~~~ 310 (319)
T cd00116 245 LLSPNISLLTLSLSCNDITDDG-----AKDLAE---VLAEKESLLELDLRG-NKFGEEG-----AQLLAESLLEPGNELE 310 (319)
T ss_pred HhccCCCceEEEccCCCCCcHH-----HHHHHH---HHhcCCCccEEECCC-CCCcHHH-----HHHHHHHHhhcCCchh
Confidence 0 02367888888888653110 011111 223346788888876 3333211 01111111112 4777
Q ss_pred CCCCCCCc
Q 037138 775 KLPLDSNS 782 (806)
Q Consensus 775 ~L~l~~n~ 782 (806)
.+++..|.
T Consensus 311 ~~~~~~~~ 318 (319)
T cd00116 311 SLWVKDDS 318 (319)
T ss_pred hcccCCCC
Confidence 77777664
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.01 E-value=3.1e-08 Score=104.56 Aligned_cols=251 Identities=16% Similarity=0.120 Sum_probs=139.9
Q ss_pred CccccchHHHHHHHHHhc-----CCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLG-----EERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIG 209 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 209 (806)
..|+|+++.++++..++. ......+.++|++|+|||+||+.+++.. . ..+ ..+..+.......+ ...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~-~--~~~---~~~~~~~~~~~~~l-~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM-G--VNL---KITSGPALEKPGDL-AAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh-C--CCE---EEeccchhcCchhH-HHHH
Confidence 368999999999988885 2345678899999999999999999987 2 222 12222111112222 2222
Q ss_pred HHhCCCC---CCC----HHHHHHHHHHHhCCCcEEEEEecCCCccCcccccccCCCCCCcEEEEecCC------------
Q 037138 210 ERIGLLE---NRS----LEERASGIFKILSKKKFLLLLDDVWERIDLTKVGIPFPSKNTSKVVFTTRL------------ 270 (806)
Q Consensus 210 ~~l~~~~---~~~----~~~~~~~l~~~l~~k~~LlvlDdv~~~~~~~~~~~~~~~~~~s~iivTtr~------------ 270 (806)
..++... -++ .....+.+...+.+.+..+|+|+..+...+.. .+ .+.+-|..||+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~--~~~~li~~t~~~~~l~~~l~sR~~ 151 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DL--PPFTLVGATTRAGMLTSPLRDRFG 151 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceee---cC--CCeEEEEecCCccccCHHHHhhcc
Confidence 2222211 000 01123345555566666667766544333321 11 224555566653
Q ss_pred -ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhh--h------cCC--CCHHHHHHHHHH
Q 037138 271 -IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITTG--L------GCK--KSQEEWSYAIEI 339 (806)
Q Consensus 271 -~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g--~------~~~--~~~~~w~~~l~~ 339 (806)
.+.+++++.+|..+++.+.+...... --.+....|++.|+|.|-.+..++ + ... .+.+..+.
T Consensus 152 ~~~~l~~l~~~e~~~il~~~~~~~~~~---~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~---- 224 (305)
T TIGR00635 152 IILRLEFYTVEELAEIVSRSAGLLNVE---IEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALK---- 224 (305)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHH----
Confidence 56899999999999999887643321 125677899999999996654433 0 000 11112221
Q ss_pred HhhcccCCCCCccchhhhhhhchhcCChhhHHHHHh-hhcCCCCCCcccHHHHHHHHHHcCCccCCCchhHHHhHHHHHH
Q 037138 340 LRRSASELPGMGKEVYPLLKFSYDSLSSEIFRSCLL-YCSLFPEDCKIDKIELIECWIGEGFLNGYEGAEVHNQGYYIIG 418 (806)
Q Consensus 340 l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~~~~~~~~~~ 418 (806)
....+...|..++. ..+..+. ..+.++.+ .+..+.+... .| .....+...++
T Consensus 225 --------------~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~---lg--------~~~~~~~~~~e 277 (305)
T TIGR00635 225 --------------ALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAA---LG--------EDADTIEDVYE 277 (305)
T ss_pred --------------HHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHH---hC--------CCcchHHHhhh
Confidence 22224556777887 4444444 55666533 3443333321 11 11223444566
Q ss_pred -HHHHcccceeeCC
Q 037138 419 -ILVHACLLEEVGS 431 (806)
Q Consensus 419 -~L~~~sll~~~~~ 431 (806)
.|++++|+.....
T Consensus 278 ~~Li~~~li~~~~~ 291 (305)
T TIGR00635 278 PYLLQIGFLQRTPR 291 (305)
T ss_pred HHHHHcCCcccCCc
Confidence 6999999976533
No 33
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.00 E-value=4.8e-08 Score=103.72 Aligned_cols=258 Identities=13% Similarity=0.105 Sum_probs=138.7
Q ss_pred CccccchHHHHHHHHHhc-----CCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLG-----EERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIG 209 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 209 (806)
..|+|+++.++.+..++. ......+.|+|++|+||||+|+.+++.. . ..+ .++..+. ......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~--~~~---~~~~~~~-~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-G--VNI---RITSGPA-LEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-C--CCe---EEEeccc-ccChHHHHHHH
Confidence 468999999999887774 2346688899999999999999999987 2 222 1222211 11112222333
Q ss_pred HHhCCCC---CCCH----HHHHHHHHHHhCCCcEEEEEecCCCccCcccccccCCCCCCcEEEEecCC------------
Q 037138 210 ERIGLLE---NRSL----EERASGIFKILSKKKFLLLLDDVWERIDLTKVGIPFPSKNTSKVVFTTRL------------ 270 (806)
Q Consensus 210 ~~l~~~~---~~~~----~~~~~~l~~~l~~k~~LlvlDdv~~~~~~~~~~~~~~~~~~s~iivTtr~------------ 270 (806)
..+.... -++. ....+.+...+.+.+..+|+|+..+...+. ..+ .+.+-|..||+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l--~~~~li~at~~~~~l~~~L~sRf~ 172 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDL--PPFTLIGATTRAGLLTSPLRDRFG 172 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccccee---ecC--CCceEEeecCCcccCCHHHHHhcC
Confidence 3332211 0000 112233444455555566666544322211 011 123455566663
Q ss_pred -ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhhhcCCCCHHHHHHHHHHHhhcccCCC-
Q 037138 271 -IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITTGLGCKKSQEEWSYAIEILRRSASELP- 348 (806)
Q Consensus 271 -~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~~~~~~~~w~~~l~~l~~~~~~~~- 348 (806)
.+.+++++.++..+++.+.+....... -.+.+..|++.|+|.|-.+..+.- ....|... ... ..+.
T Consensus 173 ~~~~l~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~ia~~~~G~pR~a~~~l~----~~~~~a~~----~~~-~~I~~ 240 (328)
T PRK00080 173 IVQRLEFYTVEELEKIVKRSARILGVEI---DEEGALEIARRSRGTPRIANRLLR----RVRDFAQV----KGD-GVITK 240 (328)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHcCCCchHHHHHHH----HHHHHHHH----cCC-CCCCH
Confidence 578999999999999998876543222 256789999999999965544430 01111110 000 0000
Q ss_pred CCccchhhhhhhchhcCChhhHHHHH-hhhcCCCCCCcccHHHHHHHHHHcCCccCCCchhHHHhHHHHHH-HHHHcccc
Q 037138 349 GMGKEVYPLLKFSYDSLSSEIFRSCL-LYCSLFPEDCKIDKIELIECWIGEGFLNGYEGAEVHNQGYYIIG-ILVHACLL 426 (806)
Q Consensus 349 ~~~~~~~~~l~~sy~~L~~~~~k~cf-l~~~~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~~~~~~~~~~-~L~~~sll 426 (806)
..-......+...+..|+.. .+..+ .....|+.+ .+..+.+.... | ...+.++..++ .|++.+|+
T Consensus 241 ~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--------~~~~~~~~~~e~~Li~~~li 307 (328)
T PRK00080 241 EIADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGG-PVGLDTLAAAL---G--------EERDTIEDVYEPYLIQQGFI 307 (328)
T ss_pred HHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCC-ceeHHHHHHHH---C--------CCcchHHHHhhHHHHHcCCc
Confidence 00012334455667778773 34444 366667655 35554443221 1 11122333344 78888888
Q ss_pred eee
Q 037138 427 EEV 429 (806)
Q Consensus 427 ~~~ 429 (806)
+..
T Consensus 308 ~~~ 310 (328)
T PRK00080 308 QRT 310 (328)
T ss_pred ccC
Confidence 765
No 34
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.95 E-value=5.1e-08 Score=108.52 Aligned_cols=272 Identities=19% Similarity=0.162 Sum_probs=176.5
Q ss_pred ccccchHHHHHHHHHhcC-CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCc-ccHHHHHHHHHHHhC
Q 037138 136 TIVGLNSTLEKVWRCLGE-ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIG 213 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~ 213 (806)
..|-|. ++.+.|.. .+.+.+.|..|+|.|||||+.+..... ..-..+.|.++... .++..+..-++..++
T Consensus 20 ~~v~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al~ 91 (894)
T COG2909 20 NYVVRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAALQ 91 (894)
T ss_pred cccccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHHH
Confidence 345554 45555554 488999999999999999999998743 33457999998654 467788888887776
Q ss_pred CCC---------------CCCHHHHHHHHHHHhC--CCcEEEEEecCCCc--cCc-ccccccCCC-CCCcEEEEecCC--
Q 037138 214 LLE---------------NRSLEERASGIFKILS--KKKFLLLLDDVWER--IDL-TKVGIPFPS-KNTSKVVFTTRL-- 270 (806)
Q Consensus 214 ~~~---------------~~~~~~~~~~l~~~l~--~k~~LlvlDdv~~~--~~~-~~~~~~~~~-~~~s~iivTtr~-- 270 (806)
.-. ..+.....+.+..-+. .++..+||||-.-. ..+ ..+...+.. ..+-..|||||+
T Consensus 92 ~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 92 QATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred HhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 322 2223334444444343 46899999997522 122 223333344 678899999998
Q ss_pred ------------ce----ecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhhhcC--CCCHHH
Q 037138 271 ------------IF----KVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITTGLGC--KKSQEE 332 (806)
Q Consensus 271 ------------~~----~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g~~~--~~~~~~ 332 (806)
.+ ..=.|+.+|+-++|....+.+- -+.-.+.+.+..+|=+-|+..+++.. +.+.+.
T Consensus 172 ~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q 245 (894)
T COG2909 172 QLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNNTSAEQ 245 (894)
T ss_pred CCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHH
Confidence 11 2235789999999987754322 14557889999999999999999332 233333
Q ss_pred HHHHHHHHhhcccCCCCCccchhhh-hhhchhcCChhhHHHHHhhhcCCCCCCcccHHHHHHHHHHcCCccCCCchhHHH
Q 037138 333 WSYAIEILRRSASELPGMGKEVYPL-LKFSYDSLSSEIFRSCLLYCSLFPEDCKIDKIELIECWIGEGFLNGYEGAEVHN 411 (806)
Q Consensus 333 w~~~l~~l~~~~~~~~~~~~~~~~~-l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~~~ 411 (806)
-...+... .+.+... ..--++.||+ .+|..++-||+++.= . ..|+.. -+-++
T Consensus 246 ~~~~LsG~----------~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f---~-~eL~~~------------Ltg~~ 298 (894)
T COG2909 246 SLRGLSGA----------ASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF---N-DELCNA------------LTGEE 298 (894)
T ss_pred Hhhhccch----------HHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh---h-HHHHHH------------HhcCC
Confidence 32221111 1111111 2234678999 789999999998641 1 233332 12235
Q ss_pred hHHHHHHHHHHcccceee---CCCcEEehHHHHHHHHHHH
Q 037138 412 QGYYIIGILVHACLLEEV---GSDHVRMHDAIRDMTLWIA 448 (806)
Q Consensus 412 ~~~~~~~~L~~~sll~~~---~~~~~~mHdlv~d~a~~~~ 448 (806)
.+...+++|.+++++-.. ....|+.|.++.+|-+.-.
T Consensus 299 ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 299 NGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRL 338 (894)
T ss_pred cHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhh
Confidence 667789999999997643 5678999999999977544
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.94 E-value=5.6e-11 Score=124.88 Aligned_cols=200 Identities=22% Similarity=0.269 Sum_probs=130.1
Q ss_pred eeecccccccCCC---CCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 464 SLMRNKIEKLSDT---PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 464 s~~~~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
.+.+...+.+|.. ..+..-...+++.|++..+|.. ++.|..|..|.|..| .+..+|..++++..|.+|||+.|.+
T Consensus 56 ~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nql 133 (722)
T KOG0532|consen 56 LLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQL 133 (722)
T ss_pred ccccchhhcCCCccccccccchhhhhccccccccCchH-HHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchh
Confidence 3444444444422 3344445667777777666655 566667777777777 5666777777777777777777777
Q ss_pred cccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeE
Q 037138 541 RELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTI 620 (806)
Q Consensus 541 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 620 (806)
..+|..++.|+ |+.|-+++|+ ++.+|.. ++.+..|..|+.+.|.+.. +...++.|.+|+.|.+
T Consensus 134 S~lp~~lC~lp-Lkvli~sNNk-l~~lp~~-ig~~~tl~~ld~s~nei~s--------------lpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 134 SHLPDGLCDLP-LKVLIVSNNK-LTSLPEE-IGLLPTLAHLDVSKNEIQS--------------LPSQLGYLTSLRDLNV 196 (722)
T ss_pred hcCChhhhcCc-ceeEEEecCc-cccCCcc-cccchhHHHhhhhhhhhhh--------------chHHhhhHHHHHHHHH
Confidence 77777777666 7777777776 5777776 6667777777777776542 2246666777777776
Q ss_pred EecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCccc------------cceeeeccc
Q 037138 621 ALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEE------------FKKVMIDFC 688 (806)
Q Consensus 621 ~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~------------L~~L~l~~c 688 (806)
..|....++ ..+. .+.+..|+++.|.....+-.+..|++|++|-|.+|+.-.. ++.|....|
T Consensus 197 rRn~l~~lp-----~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 197 RRNHLEDLP-----EELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhhCC-----HHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 666654442 2233 5666677776665555444788889999999988864321 566666666
No 36
>PF05729 NACHT: NACHT domain
Probab=98.93 E-value=4.6e-09 Score=100.05 Aligned_cols=129 Identities=17% Similarity=0.267 Sum_probs=84.3
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhcCCCCCC----CCeEEEEEeCCcccHH---HHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKFLDTPND----FDVVIWVVVSKDMQLE---RIQEKIGERIGLLENRSLEERASGIFK 229 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~----F~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~l~~ 229 (806)
+++.|+|.+|+||||+++.++.... .... +...+|++.+...... .+...|..+..... ..... .+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~---~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA-EEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-APIEE---LLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH-hcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-hhhHH---HHHH
Confidence 5789999999999999999998873 2222 4567777766543322 34444444433221 11111 1222
Q ss_pred H-hCCCcEEEEEecCCCccCc---------cc-ccccCCC--CCCcEEEEecCC--------------ceecccCChHHH
Q 037138 230 I-LSKKKFLLLLDDVWERIDL---------TK-VGIPFPS--KNTSKVVFTTRL--------------IFKVECLRDKEA 282 (806)
Q Consensus 230 ~-l~~k~~LlvlDdv~~~~~~---------~~-~~~~~~~--~~~s~iivTtr~--------------~~~l~~L~~~e~ 282 (806)
. -+.+++++|+|++++...- .. +...+.. ..+.+++||+|. .+.+.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 2 2578999999999864321 11 2222333 568999999998 589999999999
Q ss_pred HHHHHhhh
Q 037138 283 WELFLDKV 290 (806)
Q Consensus 283 ~~lf~~~~ 290 (806)
.+++.+++
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998765
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=1.2e-09 Score=102.28 Aligned_cols=123 Identities=28% Similarity=0.355 Sum_probs=55.6
Q ss_pred EEEEeeecccccccCCCC-CCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCccc-CCCCCCCEEEecC
Q 037138 460 RRRISLMRNKIEKLSDTP-TCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGI-SKLVSLQYLNLSK 537 (806)
Q Consensus 460 ~~~ls~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i-~~l~~L~~L~Ls~ 537 (806)
.+.+++.++.|..+.... .+.+|++|++++|.++.+.. +..+++|++|++++| .+..+++.+ ..+++|++|++++
T Consensus 21 ~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 21 LRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp ---------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT--EEE-TT
T ss_pred cccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcC
Confidence 488999999999887664 58899999999999998875 888999999999999 566665555 4689999999999
Q ss_pred CCccccC--hhhhcCCCCcEEecCCCcccccccc---ccccCCCCCcEEEeecc
Q 037138 538 TSIRELP--KELKALVNLKYLNLEHSRYLHTIPR---QLICSFSMLHVLRMVNC 586 (806)
Q Consensus 538 n~l~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~---~~~~~l~~L~~L~l~~~ 586 (806)
|.|..+- ..+..+++|++|++.+|.. ...+. .++..+|+|+.||-...
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCEEc
Confidence 9988553 4578899999999999985 33332 35678999999987543
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.85 E-value=1.4e-10 Score=122.03 Aligned_cols=215 Identities=24% Similarity=0.298 Sum_probs=151.4
Q ss_pred cccccccchhcchhHhhc-cCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEEecCCCc
Q 037138 484 SLFPNINRLKTIARRFFD-FMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYLNLEHSR 562 (806)
Q Consensus 484 ~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~~~ 562 (806)
+|.|++-.++.+|...+. .+.--...||+.| ....+|..++.+..|+.|.|+.|.+..+|..+++|..|.+|||+.|+
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhcccc-ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch
Confidence 345555566666644333 3344456789999 67789999999999999999999999999999999999999999998
Q ss_pred cccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhchhhccccc
Q 037138 563 YLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSHELQNCTK 642 (806)
Q Consensus 563 ~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~ 642 (806)
+..+|.. +..|+ |+.|-+++|++.. +| .+++.+..|..|+.+.|.+..+.. .+..+..
T Consensus 133 -lS~lp~~-lC~lp-Lkvli~sNNkl~~-lp-------------~~ig~~~tl~~ld~s~nei~slps-----ql~~l~s 190 (722)
T KOG0532|consen 133 -LSHLPDG-LCDLP-LKVLIVSNNKLTS-LP-------------EEIGLLPTLAHLDVSKNEIQSLPS-----QLGYLTS 190 (722)
T ss_pred -hhcCChh-hhcCc-ceeEEEecCcccc-CC-------------cccccchhHHHhhhhhhhhhhchH-----HhhhHHH
Confidence 6889987 67776 9999999988763 33 466778888899999888776542 2333444
Q ss_pred cceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCCC-ccccCCCcceEeeecCccchhhhccc
Q 037138 643 SLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVT-WLVFAPNLKSIHIANCHFMQEIISAR 721 (806)
Q Consensus 643 ~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~-~l~~l~~L~~L~L~~~~~~~~i~~~~ 721 (806)
+..+....|.....++.+..+ .|..||+++| ++..+| .+..+..|++|-|.+|.+
T Consensus 191 lr~l~vrRn~l~~lp~El~~L-pLi~lDfScN---------------kis~iPv~fr~m~~Lq~l~LenNPL-------- 246 (722)
T KOG0532|consen 191 LRDLNVRRNHLEDLPEELCSL-PLIRLDFSCN---------------KISYLPVDFRKMRHLQVLQLENNPL-------- 246 (722)
T ss_pred HHHHHHhhhhhhhCCHHHhCC-ceeeeecccC---------------ceeecchhhhhhhhheeeeeccCCC--------
Confidence 444443333322222233322 3555665554 333343 677899999999999997
Q ss_pred ccCccccccCCCCcccccceeccccc
Q 037138 722 KLGEVPELIGNLKPFAKLQYLHLRAL 747 (806)
Q Consensus 722 ~~~~ip~~~~~~~~~~~L~~L~L~~~ 747 (806)
..-|..++..+...-.++|+..-|
T Consensus 247 --qSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 247 --QSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred --CCChHHHHhccceeeeeeecchhc
Confidence 344545555565667788888877
No 39
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.83 E-value=2.7e-08 Score=101.61 Aligned_cols=156 Identities=19% Similarity=0.247 Sum_probs=98.6
Q ss_pred CCccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhC
Q 037138 134 EPTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIG 213 (806)
Q Consensus 134 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 213 (806)
+.+++|.+..+.+ .+..+.+.-...||++|+||||||+.+.... ...| ..+|-..+-.+-++.++
T Consensus 29 Q~HLlg~~~~lrr---~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f-----~~~sAv~~gvkdlr~i~---- 93 (436)
T COG2256 29 QEHLLGEGKPLRR---AVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAF-----EALSAVTSGVKDLREII---- 93 (436)
T ss_pred hHhhhCCCchHHH---HHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCce-----EEeccccccHHHHHHHH----
Confidence 3455555555444 4456788888899999999999999999976 4444 33333322222222222
Q ss_pred CCCCCCHHHHHHHH-HHHhCCCcEEEEEecCCC--ccCcccccccCCC-CCCcEEEE--ecCC--------------cee
Q 037138 214 LLENRSLEERASGI-FKILSKKKFLLLLDDVWE--RIDLTKVGIPFPS-KNTSKVVF--TTRL--------------IFK 273 (806)
Q Consensus 214 ~~~~~~~~~~~~~l-~~~l~~k~~LlvlDdv~~--~~~~~~~~~~~~~-~~~s~iiv--Ttr~--------------~~~ 273 (806)
+.- .....|++.+|++|+|.. ..+.+ ..+|. .+|.-|+| ||.+ ++.
T Consensus 94 -----------e~a~~~~~~gr~tiLflDEIHRfnK~QQD---~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~ 159 (436)
T COG2256 94 -----------EEARKNRLLGRRTILFLDEIHRFNKAQQD---ALLPHVENGTIILIGATTENPSFELNPALLSRARVFE 159 (436)
T ss_pred -----------HHHHHHHhcCCceEEEEehhhhcChhhhh---hhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheee
Confidence 222 223358999999999963 23333 33566 67777776 5554 899
Q ss_pred cccCChHHHHHHHHhhhCCCc--cC-CCCCh-HHHHHHHHHHhCCchHH
Q 037138 274 VECLRDKEAWELFLDKVGEET--LD-SHLDI-PKLAHTLAKECGGLPLA 318 (806)
Q Consensus 274 l~~L~~~e~~~lf~~~~~~~~--~~-~~~~~-~~~~~~i~~~c~GlPla 318 (806)
+++|+.+|-..++.+.+.... .. ....+ ++.-..+++.++|---+
T Consensus 160 lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 160 LKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred eecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 999999999999998543221 11 11223 44677788888886543
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.4e-09 Score=111.21 Aligned_cols=138 Identities=19% Similarity=0.210 Sum_probs=85.6
Q ss_pred CCCCccccccccccchhcchh-HhhccCCcccEEEccCCCcccc---cCcccCCCCCCCEEEecCCCccccChh--hhcC
Q 037138 477 PTCPHLLSLFPNINRLKTIAR-RFFDFMPSLTVLNLSNNGFLTK---LRPGISKLVSLQYLNLSKTSIRELPKE--LKAL 550 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~~~~~~~---lp~~i~~l~~L~~L~Ls~n~l~~lp~~--i~~L 550 (806)
+++++|+...|.++.+...+. .....|++++.||||.| .... +-.....|++|+.|+|+.|.+.....+ -..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 677888888888876654442 44677888888888888 4332 223455688888888888876633221 2356
Q ss_pred CCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhH
Q 037138 551 VNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFAL 628 (806)
Q Consensus 551 ~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 628 (806)
++|+.|.|++|.+...--......+|+|+.|++..|..... ......-+..|+.|+++.|.+...
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~-------------~~~~~~i~~~L~~LdLs~N~li~~ 261 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI-------------KATSTKILQTLQELDLSNNNLIDF 261 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce-------------ecchhhhhhHHhhccccCCccccc
Confidence 77888888888754321122245677888888887742211 001233345666777776665443
No 41
>PRK06893 DNA replication initiation factor; Validated
Probab=98.77 E-value=6.1e-08 Score=96.93 Aligned_cols=137 Identities=17% Similarity=0.248 Sum_probs=85.7
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCC
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSK 233 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~ 233 (806)
...+.+.|+|++|+|||+||+.+++... .....+.|+.+... .... ..+.+.+.
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~---~~~~-------------------~~~~~~~~- 90 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKS---QYFS-------------------PAVLENLE- 90 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHh---hhhh-------------------HHHHhhcc-
Confidence 3446789999999999999999999862 22335567765311 0000 01112222
Q ss_pred CcEEEEEecCCCc---cCcc-cccccCCC--CCCcEEEE-ecCC--------------------ceecccCChHHHHHHH
Q 037138 234 KKFLLLLDDVWER---IDLT-KVGIPFPS--KNTSKVVF-TTRL--------------------IFKVECLRDKEAWELF 286 (806)
Q Consensus 234 k~~LlvlDdv~~~---~~~~-~~~~~~~~--~~~s~iiv-Ttr~--------------------~~~l~~L~~~e~~~lf 286 (806)
+.-+|||||+|.. ..|+ .+...+.. ..|+.+|| |++. .++++++++++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 2348999999863 3344 23333333 34566654 4443 6789999999999999
Q ss_pred HhhhCCCccCCCCChHHHHHHHHHHhCCchHHH
Q 037138 287 LDKVGEETLDSHLDIPKLAHTLAKECGGLPLAL 319 (806)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 319 (806)
++.+.......+ +++...|++.+.|-.-++
T Consensus 171 ~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l 200 (229)
T PRK06893 171 QRNAYQRGIELS---DEVANFLLKRLDRDMHTL 200 (229)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhccCCHHHH
Confidence 988864432222 667788888887655333
No 42
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.76 E-value=1.2e-07 Score=111.63 Aligned_cols=289 Identities=13% Similarity=0.150 Sum_probs=165.5
Q ss_pred cccchHHHHHHHHHhcC---CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcc---cHHHHHHHHHH
Q 037138 137 IVGLNSTLEKVWRCLGE---ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDM---QLERIQEKIGE 210 (806)
Q Consensus 137 ~~gr~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~---~~~~~~~~i~~ 210 (806)
++||+.+++.|...+.+ +...++.+.|..|||||+|+++|.....+.+..|-...+-....+. ...+.+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 68999999999988854 5677999999999999999999999873322222111111111221 23344444444
Q ss_pred HhCCCCCC-------------------------------------------CHHHH-----HHHHHHHh-CCCcEEEEEe
Q 037138 211 RIGLLENR-------------------------------------------SLEER-----ASGIFKIL-SKKKFLLLLD 241 (806)
Q Consensus 211 ~l~~~~~~-------------------------------------------~~~~~-----~~~l~~~l-~~k~~LlvlD 241 (806)
++...... ....+ ...+.... +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 44111100 00111 11122222 4569999999
Q ss_pred cCC-Cc-cCcccccccCCC-C----CCcEE--EEecCC-------------ceecccCChHHHHHHHHhhhCCCccCCCC
Q 037138 242 DVW-ER-IDLTKVGIPFPS-K----NTSKV--VFTTRL-------------IFKVECLRDKEAWELFLDKVGEETLDSHL 299 (806)
Q Consensus 242 dv~-~~-~~~~~~~~~~~~-~----~~s~i--ivTtr~-------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~ 299 (806)
|+. -+ ..++-+...... . ....| +.|.+. .+.|.||+..+...+.....+... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~----~ 237 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK----L 237 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----c
Confidence 994 21 222211111111 0 01122 222222 789999999999999998886532 2
Q ss_pred ChHHHHHHHHHHhCCchHHHHHhh--------hcCCCCHHHHHHHHHHHhhcccCCCCCccchhhhhhhchhcCChhhHH
Q 037138 300 DIPKLAHTLAKECGGLPLALITTG--------LGCKKSQEEWSYAIEILRRSASELPGMGKEVYPLLKFSYDSLSSEIFR 371 (806)
Q Consensus 300 ~~~~~~~~i~~~c~GlPlai~~~g--------~~~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k 371 (806)
...+....|+++.+|+|+.+.-+- +....+...|..-...+.. .+..+.+...+..-.+.||+ ..+
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-----~~~~~~vv~~l~~rl~kL~~-~t~ 311 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-----LATTDAVVEFLAARLQKLPG-TTR 311 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-----chhhHHHHHHHHHHHhcCCH-HHH
Confidence 336788999999999999986554 2334555566543322211 12223466678889999999 689
Q ss_pred HHHhhhcCCCCCCcccHHHHHHHHHHcCCccCCCchhHHHhHHHHHHHHHHcccceee---------CCC-cEEehHHHH
Q 037138 372 SCLLYCSLFPEDCKIDKIELIECWIGEGFLNGYEGAEVHNQGYYIIGILVHACLLEEV---------GSD-HVRMHDAIR 441 (806)
Q Consensus 372 ~cfl~~~~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~---------~~~-~~~mHdlv~ 441 (806)
...-..|++...|. .+.|...|-. .....+....+.|.+..++... ... +-..|+.++
T Consensus 312 ~Vl~~AA~iG~~F~--l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vq 379 (849)
T COG3899 312 EVLKAAACIGNRFD--LDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQ 379 (849)
T ss_pred HHHHHHHHhCccCC--HHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHH
Confidence 99999999876554 4444433321 1223344444555554444321 111 235788888
Q ss_pred HHHHHH
Q 037138 442 DMTLWI 447 (806)
Q Consensus 442 d~a~~~ 447 (806)
+.|-..
T Consensus 380 qaaY~~ 385 (849)
T COG3899 380 QAAYNL 385 (849)
T ss_pred HHHhcc
Confidence 877553
No 43
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.75 E-value=7.6e-08 Score=105.34 Aligned_cols=163 Identities=17% Similarity=0.170 Sum_probs=101.3
Q ss_pred CccccchHHHHH---HHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHH
Q 037138 135 PTIVGLNSTLEK---VWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGER 211 (806)
Q Consensus 135 ~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 211 (806)
..+||++..+.. +.+++..+....+.++|++|+||||+|+.+++.. ...| +.++....-.+-.+.+++.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~ii~~ 83 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREVIEE 83 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHHHHH
Confidence 357888887666 7777777778888999999999999999999976 2333 2222211111111222211
Q ss_pred hCCCCCCCHHHHHHHHHH-HhCCCcEEEEEecCCCcc--CcccccccCCCCCCcEEEE--ecCC--------------ce
Q 037138 212 IGLLENRSLEERASGIFK-ILSKKKFLLLLDDVWERI--DLTKVGIPFPSKNTSKVVF--TTRL--------------IF 272 (806)
Q Consensus 212 l~~~~~~~~~~~~~~l~~-~l~~k~~LlvlDdv~~~~--~~~~~~~~~~~~~~s~iiv--Ttr~--------------~~ 272 (806)
... ...+++.+|++|+++... ..+.+...+ ..|..++| ||.+ .+
T Consensus 84 ---------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l--e~~~iilI~att~n~~~~l~~aL~SR~~~~ 146 (413)
T PRK13342 84 ---------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHV--EDGTITLIGATTENPSFEVNPALLSRAQVF 146 (413)
T ss_pred ---------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHh--hcCcEEEEEeCCCChhhhccHHHhccceee
Confidence 111 124678999999998542 233332222 23444444 3433 67
Q ss_pred ecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHh
Q 037138 273 KVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITT 322 (806)
Q Consensus 273 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 322 (806)
.+.+++.++.+.++.+.+.........--.+....|++.|+|.|..+..+
T Consensus 147 ~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 147 ELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred EeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 89999999999999887643110000122567788999999998765433
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=4e-09 Score=107.95 Aligned_cols=182 Identities=19% Similarity=0.168 Sum_probs=122.8
Q ss_pred EEEeeecccccccC---CCCCCCccccccccccchhcch--hHhhccCCcccEEEccCCCcccccCc-ccCCCCCCCEEE
Q 037138 461 RRISLMRNKIEKLS---DTPTCPHLLSLFPNINRLKTIA--RRFFDFMPSLTVLNLSNNGFLTKLRP-GISKLVSLQYLN 534 (806)
Q Consensus 461 ~~ls~~~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~l~~L~~L~ 534 (806)
|.+++....+...+ -...|++++.|+|+.|-+..+. ..+...+++|+.|+|+.|....-... .-..+.+|+.|.
T Consensus 124 ~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~ 203 (505)
T KOG3207|consen 124 REISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLV 203 (505)
T ss_pred hheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEE
Confidence 55666666665544 3478999999999999655442 34567899999999999953321111 123578999999
Q ss_pred ecCCCcc--ccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCC
Q 037138 535 LSKTSIR--ELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISL 612 (806)
Q Consensus 535 Ls~n~l~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 612 (806)
|+.|+++ .+-..+..+++|..|+|..|..+..-... ...+..|+.|+|++|.+... ......+.+
T Consensus 204 l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~------------~~~~~~~~l 270 (505)
T KOG3207|consen 204 LNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDF------------DQGYKVGTL 270 (505)
T ss_pred eccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccc------------ccccccccc
Confidence 9999998 44445667899999999999422211111 34577899999999987643 122467888
Q ss_pred CCCCeeeEEecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccC
Q 037138 613 KHLNVLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRN 676 (806)
Q Consensus 613 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 676 (806)
+.|+.|+++.+++..+..... . .......+++|++|++..|+.
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~-------------------~--s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDV-------------------E--SLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred cchhhhhccccCcchhcCCCc-------------------c--chhhhcccccceeeecccCcc
Confidence 899999988877765431100 0 000123467888888888764
No 45
>PLN03150 hypothetical protein; Provisional
Probab=98.70 E-value=2.6e-08 Score=114.46 Aligned_cols=108 Identities=20% Similarity=0.276 Sum_probs=74.9
Q ss_pred ccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCcc-ccChhhhcCCCCcEEecC
Q 037138 481 HLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIR-ELPKELKALVNLKYLNLE 559 (806)
Q Consensus 481 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~L~ 559 (806)
.++.|+|++|.+....+..+..+++|+.|+|++|.+.+.+|..++.+++|++|+|++|.+. .+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3666777777776555555777777777777777666677777777777777777777776 677777777777777777
Q ss_pred CCccccccccccccC-CCCCcEEEeecccCC
Q 037138 560 HSRYLHTIPRQLICS-FSMLHVLRMVNCDYS 589 (806)
Q Consensus 560 ~~~~l~~lp~~~~~~-l~~L~~L~l~~~~~~ 589 (806)
+|.+.+.+|.. ++. +.++..+++.+|...
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCccc
Confidence 77766677765 333 345666777666543
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.68 E-value=1e-08 Score=112.66 Aligned_cols=177 Identities=28% Similarity=0.363 Sum_probs=90.6
Q ss_pred ccCCcccEEEccCCCcccccCcccCCCC-CCCEEEecCCCccccChhhhcCCCCcEEecCCCccccccccccccCCCCCc
Q 037138 501 DFMPSLTVLNLSNNGFLTKLRPGISKLV-SLQYLNLSKTSIRELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLH 579 (806)
Q Consensus 501 ~~l~~L~~L~Ls~~~~~~~lp~~i~~l~-~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~ 579 (806)
..++.+..|++.+| .+..+|...+.+. +|+.|++++|.+..+|..++.+++|+.|++++|+ +..+|.. .+.+++|+
T Consensus 113 ~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~-~~~~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKL-LSNLSNLN 189 (394)
T ss_pred hcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhh-hhhhhhhh
Confidence 33455666666666 4555555555553 6666666666666666556666666666666665 4555543 33566666
Q ss_pred EEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhchhhccccccceeccCCCCCcccccc
Q 037138 580 VLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYS 659 (806)
Q Consensus 580 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~ 659 (806)
.|++++|.+... | .....+.+|+.+.++.|...... ..+.....+..+....+........
T Consensus 190 ~L~ls~N~i~~l-~-------------~~~~~~~~L~~l~~~~N~~~~~~-----~~~~~~~~l~~l~l~~n~~~~~~~~ 250 (394)
T COG4886 190 NLDLSGNKISDL-P-------------PEIELLSALEELDLSNNSIIELL-----SSLSNLKNLSGLELSNNKLEDLPES 250 (394)
T ss_pred heeccCCccccC-c-------------hhhhhhhhhhhhhhcCCcceecc-----hhhhhcccccccccCCceeeeccch
Confidence 666666655432 1 12223334555555554211110 0111112222222112211111224
Q ss_pred cccccccceEeeccccCccccceeeecccCCcCCCCccccCCCcceEeeecCccc
Q 037138 660 LADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFAPNLKSIHIANCHFM 714 (806)
Q Consensus 660 l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~~~~~ 714 (806)
++.+++|+.|++++|. +..++.++.+.+|+.|+++++...
T Consensus 251 ~~~l~~l~~L~~s~n~---------------i~~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 251 IGNLSNLETLDLSNNQ---------------ISSISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred hccccccceecccccc---------------ccccccccccCccCEEeccCcccc
Confidence 5566677777777763 333444666777888888877663
No 47
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.67 E-value=1.7e-07 Score=94.16 Aligned_cols=152 Identities=16% Similarity=0.165 Sum_probs=89.1
Q ss_pred chHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCC
Q 037138 140 LNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRS 219 (806)
Q Consensus 140 r~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 219 (806)
.+..++.+.+++.......|.|+|++|+|||+||+.+++.. .......++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~---~~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA---EERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH---HhcCCcEEEEeHHHHHH------hH-----------
Confidence 44567777777656667889999999999999999999886 22333456666442211 00
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecCCCcc---C-cccccccCCC--CCCcEEEEecCC--------------------cee
Q 037138 220 LEERASGIFKILSKKKFLLLLDDVWERI---D-LTKVGIPFPS--KNTSKVVFTTRL--------------------IFK 273 (806)
Q Consensus 220 ~~~~~~~l~~~l~~k~~LlvlDdv~~~~---~-~~~~~~~~~~--~~~s~iivTtr~--------------------~~~ 273 (806)
..+...+.+. -+||+||++... . .+.+...+.. ..+..+|+||+. .++
T Consensus 82 -----~~~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~ 155 (226)
T TIGR03420 82 -----PEVLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQ 155 (226)
T ss_pred -----HHHHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEe
Confidence 1111222232 389999997543 2 2233333322 344588888874 356
Q ss_pred cccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHH
Q 037138 274 VECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALI 320 (806)
Q Consensus 274 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 320 (806)
+.+++.++...++...+...... --.+..+.+++.++|.|..+.
T Consensus 156 l~~l~~~e~~~~l~~~~~~~~~~---~~~~~l~~L~~~~~gn~r~L~ 199 (226)
T TIGR03420 156 LPPLSDEEKIAALQSRAARRGLQ---LPDEVADYLLRHGSRDMGSLM 199 (226)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhccCCHHHHH
Confidence 77777777777766544221111 113455666666666665443
No 48
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.65 E-value=3.6e-07 Score=102.67 Aligned_cols=190 Identities=14% Similarity=0.110 Sum_probs=117.0
Q ss_pred CCccccchHHHHHHHHHhcC----C-CceEEEEEccCCCCHHHHHHHHHhhcCCC--CCCCC--eEEEEEeCCcccHHHH
Q 037138 134 EPTIVGLNSTLEKVWRCLGE----E-RVGIIGLYGMGGVGKTTLLAQINNKFLDT--PNDFD--VVIWVVVSKDMQLERI 204 (806)
Q Consensus 134 ~~~~~gr~~~~~~l~~~l~~----~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~F~--~~~wv~~s~~~~~~~~ 204 (806)
+..+.|||+++++|..+|.+ . ...++.|+|++|+|||++++.|.+..... ..... .+++|++..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 45688999999999988843 2 33577899999999999999998765211 11122 3677887777788889
Q ss_pred HHHHHHHhCCCC---CCCHHHHHHHHHHHhC---CCcEEEEEecCCCccC--cccccccCC--CCCCcEEEE--ecCC--
Q 037138 205 QEKIGERIGLLE---NRSLEERASGIFKILS---KKKFLLLLDDVWERID--LTKVGIPFP--SKNTSKVVF--TTRL-- 270 (806)
Q Consensus 205 ~~~i~~~l~~~~---~~~~~~~~~~l~~~l~---~k~~LlvlDdv~~~~~--~~~~~~~~~--~~~~s~iiv--Ttr~-- 270 (806)
+..|++++.... .....+....+...+. +...+||||+|+.... -+.+...+. ...+++|+| .|..
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 999998885433 2233344555555442 2345899999975321 111221121 133455444 2321
Q ss_pred ----------------ceecccCChHHHHHHHHhhhCCCc-cCCCCChHHHHHHHHHHhCCchHHHHHhh
Q 037138 271 ----------------IFKVECLRDKEAWELFLDKVGEET-LDSHLDIPKLAHTLAKECGGLPLALITTG 323 (806)
Q Consensus 271 ----------------~~~l~~L~~~e~~~lf~~~~~~~~-~~~~~~~~~~~~~i~~~c~GlPlai~~~g 323 (806)
.+..+|++.+|-.+++..++.... .-.+..++-+|+.++...|-.-.|+.++-
T Consensus 914 LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILR 983 (1164)
T PTZ00112 914 LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICR 983 (1164)
T ss_pred cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHH
Confidence 367789999999999988875321 11122233444545544555566665544
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=3.8e-09 Score=102.53 Aligned_cols=134 Identities=22% Similarity=0.234 Sum_probs=96.7
Q ss_pred CCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEE
Q 037138 477 PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYL 556 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L 556 (806)
.....|..+++++|.|+.+..+ ..-.+.+|+|++|+|. +..+. ++..|++|+.||||+|.++++-..-.+|-|.++|
T Consensus 281 dTWq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N~-i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDES-VKLAPKLRRLILSQNR-IRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchhhhhhh-hhhccceeEEeccccc-eeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 3456788888888888777665 5667888888888884 44433 3777888888888888888776666677788888
Q ss_pred ecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhH
Q 037138 557 NLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFAL 628 (806)
Q Consensus 557 ~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 628 (806)
.|++|. +..+.. ++++-+|..|++++|.+... .....+++|+-|+.+.+.+|.+..+
T Consensus 358 ~La~N~-iE~LSG--L~KLYSLvnLDl~~N~Ie~l------------deV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 358 KLAQNK-IETLSG--LRKLYSLVNLDLSSNQIEEL------------DEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ehhhhh-Hhhhhh--hHhhhhheeccccccchhhH------------HHhcccccccHHHHHhhcCCCcccc
Confidence 888886 555553 77888888888888876532 1224567778888888877776544
No 50
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.5e-06 Score=92.20 Aligned_cols=186 Identities=19% Similarity=0.230 Sum_probs=125.4
Q ss_pred CccccchHHHHHHHHHhcC----CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLGE----ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGE 210 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 210 (806)
..+.+||.+++++...|.. ..+.-+.|+|.+|+|||+.++.+...........+ +++|++-...+..+++..|+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 4488999999999988743 34445999999999999999999998732222233 899999999999999999999
Q ss_pred HhCCCC--CCCHHHHHHHHHHHhC--CCcEEEEEecCCCccCc--ccccccCCC--CCCcEEEE--ecCC----------
Q 037138 211 RIGLLE--NRSLEERASGIFKILS--KKKFLLLLDDVWERIDL--TKVGIPFPS--KNTSKVVF--TTRL---------- 270 (806)
Q Consensus 211 ~l~~~~--~~~~~~~~~~l~~~l~--~k~~LlvlDdv~~~~~~--~~~~~~~~~--~~~s~iiv--Ttr~---------- 270 (806)
+++... ..+..+..+.+.+.+. ++.+++|||+++....- +-+...+.. ...++|++ .+-+
T Consensus 96 ~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~r 175 (366)
T COG1474 96 KLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPR 175 (366)
T ss_pred HcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhh
Confidence 996333 5667777777777774 68899999999864332 222222222 22444333 2222
Q ss_pred --------ceecccCChHHHHHHHHhhhC---CCccCCCCChHH-HHHHHHHHhCCchHHHHHh
Q 037138 271 --------IFKVECLRDKEAWELFLDKVG---EETLDSHLDIPK-LAHTLAKECGGLPLALITT 322 (806)
Q Consensus 271 --------~~~l~~L~~~e~~~lf~~~~~---~~~~~~~~~~~~-~~~~i~~~c~GlPlai~~~ 322 (806)
.+..+|-+.+|-..++..++. ... ...++.-+ ++...++..|-.-.|+.++
T Consensus 176 v~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~-~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 176 VKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAG-VIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCC-CcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 567889999999999988762 222 22333334 3444444444445555443
No 51
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.63 E-value=6e-09 Score=101.18 Aligned_cols=129 Identities=22% Similarity=0.252 Sum_probs=90.7
Q ss_pred CCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEE
Q 037138 503 MPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLR 582 (806)
Q Consensus 503 l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~ 582 (806)
.+.|..||||+| .+..+.+++.-++.++.|++|+|.|..+-. +..|++|++||||+|. +..+... -.++.|.++|.
T Consensus 283 Wq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gw-h~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGW-HLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhh-HhhhcCEeeee
Confidence 456778888888 677777777777888888888888776654 7778888888888876 4444432 45677788888
Q ss_pred eecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhchhhccccccceeccCCCCCccccccccc
Q 037138 583 MVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLAD 662 (806)
Q Consensus 583 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~ 662 (806)
+++|.+... ..+..|-+|..|++..|.+..+... ..+++
T Consensus 359 La~N~iE~L---------------SGL~KLYSLvnLDl~~N~Ie~ldeV--------------------------~~IG~ 397 (490)
T KOG1259|consen 359 LAQNKIETL---------------SGLRKLYSLVNLDLSSNQIEELDEV--------------------------NHIGN 397 (490)
T ss_pred hhhhhHhhh---------------hhhHhhhhheeccccccchhhHHHh--------------------------ccccc
Confidence 877765432 4566666777777777776654422 25777
Q ss_pred ccccceEeeccccC
Q 037138 663 LKHLDKLDLIYCRN 676 (806)
Q Consensus 663 l~~L~~L~L~~~~~ 676 (806)
+|.|+.+.|.+|+.
T Consensus 398 LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 398 LPCLETLRLTGNPL 411 (490)
T ss_pred ccHHHHHhhcCCCc
Confidence 88888888888763
No 52
>PLN03150 hypothetical protein; Provisional
Probab=98.62 E-value=6.9e-08 Score=111.04 Aligned_cols=88 Identities=32% Similarity=0.513 Sum_probs=81.2
Q ss_pred cccEEEccCCCcccccCcccCCCCCCCEEEecCCCcc-ccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEe
Q 037138 505 SLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIR-ELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRM 583 (806)
Q Consensus 505 ~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l 583 (806)
.++.|+|++|.+.+.+|..++.+++|++|+|++|.+. .+|..++.+++|+.|+|++|++.+.+|.. ++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 4788999999888899999999999999999999998 89999999999999999999988889986 899999999999
Q ss_pred ecccCCCCCC
Q 037138 584 VNCDYSGKIP 593 (806)
Q Consensus 584 ~~~~~~~~~~ 593 (806)
++|.+.+.+|
T Consensus 498 s~N~l~g~iP 507 (623)
T PLN03150 498 NGNSLSGRVP 507 (623)
T ss_pred cCCcccccCC
Confidence 9999998877
No 53
>PRK04195 replication factor C large subunit; Provisional
Probab=98.62 E-value=3.6e-06 Score=94.09 Aligned_cols=229 Identities=17% Similarity=0.223 Sum_probs=131.3
Q ss_pred CccccchHHHHHHHHHhcC----CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLGE----ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGE 210 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 210 (806)
..++|.++.++++.+|+.. ...+.+.|+|++|+||||+|+.+++.. . |+ ++-++.++..+...+ ..++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-~----~~-~ielnasd~r~~~~i-~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-G----WE-VIELNASDQRTADVI-ERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-C----CC-EEEEcccccccHHHH-HHHHH
Confidence 4589999999999998853 227889999999999999999999986 1 22 344455544333322 22222
Q ss_pred HhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCccC------cccccccCCCCCCcEEEEecCC--------------
Q 037138 211 RIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERID------LTKVGIPFPSKNTSKVVFTTRL-------------- 270 (806)
Q Consensus 211 ~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~------~~~~~~~~~~~~~s~iivTtr~-------------- 270 (806)
..... ......++-+||+|+++.... +..+...+. ..+..||+|+.+
T Consensus 87 ~~~~~------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~-~~~~~iIli~n~~~~~~~k~Lrsr~~ 153 (482)
T PRK04195 87 EAATS------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK-KAKQPIILTANDPYDPSLRELRNACL 153 (482)
T ss_pred Hhhcc------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH-cCCCCEEEeccCccccchhhHhccce
Confidence 21110 001113678999999986422 233322222 234456666643
Q ss_pred ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhh--hcCC---CCHHHHHHHHHHHhhccc
Q 037138 271 IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITTG--LGCK---KSQEEWSYAIEILRRSAS 345 (806)
Q Consensus 271 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g--~~~~---~~~~~w~~~l~~l~~~~~ 345 (806)
.+.+.+++.++....+...+.......+ .+....|++.++|-.-.+.... +... .+.+....+. .
T Consensus 154 ~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~---~---- 223 (482)
T PRK04195 154 MIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLG---R---- 223 (482)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhh---c----
Confidence 6788999999998888877644332222 5678889999998765543222 2221 2233222211 0
Q ss_pred CCCCCccchhhhhhhchh-cCChhhHHHHHhhhcCCCCCCcccHHHHHHHHHHcCCccCC
Q 037138 346 ELPGMGKEVYPLLKFSYD-SLSSEIFRSCLLYCSLFPEDCKIDKIELIECWIGEGFLNGY 404 (806)
Q Consensus 346 ~~~~~~~~~~~~l~~sy~-~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~Wia~g~i~~~ 404 (806)
.+...+++.++..-+. .-+. .+...+..+ .++- ..+-.|+.+.+....
T Consensus 224 --~d~~~~if~~l~~i~~~k~~~-~a~~~~~~~-------~~~~-~~i~~~l~en~~~~~ 272 (482)
T PRK04195 224 --RDREESIFDALDAVFKARNAD-QALEASYDV-------DEDP-DDLIEWIDENIPKEY 272 (482)
T ss_pred --CCCCCCHHHHHHHHHCCCCHH-HHHHHHHcc-------cCCH-HHHHHHHHhcccccc
Confidence 1122356666665554 2222 333322221 1222 456789999987654
No 54
>PF13173 AAA_14: AAA domain
Probab=98.60 E-value=1.1e-07 Score=85.84 Aligned_cols=107 Identities=19% Similarity=0.180 Sum_probs=74.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKK 235 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 235 (806)
-+++.|.|+.|+||||++++++.+. . ....+++++..+.........+ ..+.+.+....++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDPRDRRLADPD---------------LLEYFLELIKPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCHHHHHHhhhh---------------hHHHHHHhhccCC
Confidence 4689999999999999999999987 1 4456778876654332111000 2233333344578
Q ss_pred EEEEEecCCCccCcccccccCCC-CCCcEEEEecCC-----------------ceecccCChHH
Q 037138 236 FLLLLDDVWERIDLTKVGIPFPS-KNTSKVVFTTRL-----------------IFKVECLRDKE 281 (806)
Q Consensus 236 ~LlvlDdv~~~~~~~~~~~~~~~-~~~s~iivTtr~-----------------~~~l~~L~~~e 281 (806)
.+++||++....+|......+.+ ....+|++|+.. .+++.||+..|
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 89999999988888877666655 557899999986 56777777665
No 55
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.59 E-value=1.2e-05 Score=91.79 Aligned_cols=185 Identities=16% Similarity=0.080 Sum_probs=108.6
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCC---CeEEEEEeCC---cccHHHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDF---DVVIWVVVSK---DMQLERIQEKI 208 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F---~~~~wv~~s~---~~~~~~~~~~i 208 (806)
+.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.. .....+ ...-|+.+.. ..+...+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 4589999999998888876667789999999999999999998875 222222 1234444432 11222221111
Q ss_pred ---------------HHHhCCCC-------------------CCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCcccc
Q 037138 209 ---------------GERIGLLE-------------------NRSLEERASGIFKILSKKKFLLLLDDVWER--IDLTKV 252 (806)
Q Consensus 209 ---------------~~~l~~~~-------------------~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~~ 252 (806)
+...+... ..=....+..+.+.++++++.++-|+.|.. ..|+.+
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~i 312 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYI 312 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhh
Confidence 11111100 000122456777888888888887766643 346666
Q ss_pred cccCCC-CCCcEEEE--ecCC-------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch
Q 037138 253 GIPFPS-KNTSKVVF--TTRL-------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP 316 (806)
Q Consensus 253 ~~~~~~-~~~s~iiv--Ttr~-------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 316 (806)
...+.. .+...|++ ||++ .+.+.+++.+|.+.++.+.+....... -.++...|.+.+..-+
T Consensus 313 k~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l---s~eal~~L~~ys~~gR 389 (615)
T TIGR02903 313 KKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL---AAGVEELIARYTIEGR 389 (615)
T ss_pred hhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHCCCcHH
Confidence 555555 33344444 5654 667889999999999988764322111 1344455555444334
Q ss_pred HHHHHhh
Q 037138 317 LALITTG 323 (806)
Q Consensus 317 lai~~~g 323 (806)
-|+..++
T Consensus 390 raln~L~ 396 (615)
T TIGR02903 390 KAVNILA 396 (615)
T ss_pred HHHHHHH
Confidence 5555444
No 56
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.59 E-value=3.9e-08 Score=75.51 Aligned_cols=59 Identities=36% Similarity=0.466 Sum_probs=30.2
Q ss_pred ccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCC
Q 037138 481 HLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTS 539 (806)
Q Consensus 481 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~ 539 (806)
+|++|++++|.++.+++..|..+++|++|++++|.+...-|..|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555555555555555555555553333333445555555555555554
No 57
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.58 E-value=8.2e-07 Score=88.98 Aligned_cols=149 Identities=21% Similarity=0.265 Sum_probs=96.9
Q ss_pred HHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 037138 147 VWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASG 226 (806)
Q Consensus 147 l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 226 (806)
+...+..+.+.-+.+||++|+||||||+.+.+.. +... ..||..|-...-.+-.++|+++-.
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts-k~~S----yrfvelSAt~a~t~dvR~ife~aq------------- 214 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS-KKHS----YRFVELSATNAKTNDVRDIFEQAQ------------- 214 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc-CCCc----eEEEEEeccccchHHHHHHHHHHH-------------
Confidence 3344566888999999999999999999999986 2222 556776655443334444443321
Q ss_pred HHHHhCCCcEEEEEecCCC--ccCcccccccCCC-CCCcEEEE--ecCC--------------ceecccCChHHHHHHHH
Q 037138 227 IFKILSKKKFLLLLDDVWE--RIDLTKVGIPFPS-KNTSKVVF--TTRL--------------IFKVECLRDKEAWELFL 287 (806)
Q Consensus 227 l~~~l~~k~~LlvlDdv~~--~~~~~~~~~~~~~-~~~s~iiv--Ttr~--------------~~~l~~L~~~e~~~lf~ 287 (806)
=...+.++|.+|++|+|.. ..+.+ ..+|. .+|.-++| ||.+ ++.|++|..++...++.
T Consensus 215 ~~~~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ 291 (554)
T KOG2028|consen 215 NEKSLTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILM 291 (554)
T ss_pred HHHhhhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHH
Confidence 1133568899999999953 23333 34666 67776665 6655 88999999999999988
Q ss_pred hhh---CCCcc--CCCCC----h-HHHHHHHHHHhCCch
Q 037138 288 DKV---GEETL--DSHLD----I-PKLAHTLAKECGGLP 316 (806)
Q Consensus 288 ~~~---~~~~~--~~~~~----~-~~~~~~i~~~c~GlP 316 (806)
+.. +.... ..-++ + ..+...++..|.|-.
T Consensus 292 raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 292 RAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred HHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 743 22211 11122 2 345677777887764
No 58
>PLN03025 replication factor C subunit; Provisional
Probab=98.58 E-value=7.5e-07 Score=94.12 Aligned_cols=165 Identities=16% Similarity=0.199 Sum_probs=102.2
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCC-eEEEEEeCCcccHHHHHHHHHHHhC
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFD-VVIWVVVSKDMQLERIQEKIGERIG 213 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~ 213 (806)
..++|.++.++.+..++..+..+.+.++|++|+||||+|+.+++... ...|. .++-++.++..+...+ +.+++.+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~~v-r~~i~~~~ 89 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGIDVV-RNKIKMFA 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHHHH-HHHHHHHH
Confidence 35789999999888888777777788999999999999999998861 22232 2233333433333222 22221111
Q ss_pred CCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc--CcccccccCCC-CCCcEEEEecCC-------------ceecccC
Q 037138 214 LLENRSLEERASGIFKILSKKKFLLLLDDVWERI--DLTKVGIPFPS-KNTSKVVFTTRL-------------IFKVECL 277 (806)
Q Consensus 214 ~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~--~~~~~~~~~~~-~~~s~iivTtr~-------------~~~l~~L 277 (806)
.... ..-.++.-++++|+++... ....+...+.. ...+++|+++.. .++++++
T Consensus 90 ~~~~-----------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l 158 (319)
T PLN03025 90 QKKV-----------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRL 158 (319)
T ss_pred hccc-----------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCC
Confidence 0000 0002456799999997542 22333333333 455677776644 6889999
Q ss_pred ChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch
Q 037138 278 RDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP 316 (806)
Q Consensus 278 ~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 316 (806)
++++....+...+......-. .+....|++.++|-.
T Consensus 159 ~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDl 194 (319)
T PLN03025 159 SDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDM 194 (319)
T ss_pred CHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCH
Confidence 999998888887754332211 456788888888765
No 59
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=1.8e-06 Score=91.12 Aligned_cols=166 Identities=15% Similarity=0.169 Sum_probs=112.3
Q ss_pred ccccchHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHhhcC---CCCCCCCeEEEEE-eCCcccHHHHHHHHHH
Q 037138 136 TIVGLNSTLEKVWRCLGEERV-GIIGLYGMGGVGKTTLLAQINNKFL---DTPNDFDVVIWVV-VSKDMQLERIQEKIGE 210 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~~F~~~~wv~-~s~~~~~~~~~~~i~~ 210 (806)
.++|.+..++.+.+.+..+.. ....++|+.|+||||+|+.++.... ....|+|...|.. -+....+.++. ++.+
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~~~ 83 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NIIE 83 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HHHH
Confidence 578999999999999977654 5668999999999999999998641 1245777666655 23333444422 2323
Q ss_pred HhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCC--CccCcccccccCCC-CCCcEEEEecCC-------------ceec
Q 037138 211 RIGLLENRSLEERASGIFKILSKKKFLLLLDDVW--ERIDLTKVGIPFPS-KNTSKVVFTTRL-------------IFKV 274 (806)
Q Consensus 211 ~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~--~~~~~~~~~~~~~~-~~~s~iivTtr~-------------~~~l 274 (806)
.+... -..+++-++|+|+++ +...++.+...+.. ..++.+|++|.+ .+.+
T Consensus 84 ~~~~~--------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~ 149 (313)
T PRK05564 84 EVNKK--------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKL 149 (313)
T ss_pred HHhcC--------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeC
Confidence 22110 112455667777765 34456667666766 678888888865 7889
Q ss_pred ccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhh
Q 037138 275 ECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITTG 323 (806)
Q Consensus 275 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g 323 (806)
.++++++....+.+.+.... .+.+..++..++|.|..+....
T Consensus 150 ~~~~~~~~~~~l~~~~~~~~-------~~~~~~l~~~~~g~~~~a~~~~ 191 (313)
T PRK05564 150 NRLSKEEIEKFISYKYNDIK-------EEEKKSAIAFSDGIPGKVEKFI 191 (313)
T ss_pred CCcCHHHHHHHHHHHhcCCC-------HHHHHHHHHHcCCCHHHHHHHh
Confidence 99999999888766542111 3447788999999987665444
No 60
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=9.7e-07 Score=98.90 Aligned_cols=168 Identities=17% Similarity=0.193 Sum_probs=108.5
Q ss_pred CccccchHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHhhcCCCC-------------------CCCCeEEEEE
Q 037138 135 PTIVGLNSTLEKVWRCLGEERV-GIIGLYGMGGVGKTTLLAQINNKFLDTP-------------------NDFDVVIWVV 194 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~~F~~~~wv~ 194 (806)
.++||.+..++.|.+++..+++ ..+.++|..|+||||+|+.+.+... -. +.|.-+++++
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn-Ce~~~~~~PCG~C~sCr~I~~G~h~DviEID 94 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN-CETGVTSQPCGVCRACREIDEGRFVDYVEMD 94 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CccCCCCCCCcccHHHHHHhcCCCceEEEec
Confidence 4689999999999999987664 4567999999999999999888751 11 1122233443
Q ss_pred eCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc--CcccccccCCC-CCCcEEEEecCC-
Q 037138 195 VSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERI--DLTKVGIPFPS-KNTSKVVFTTRL- 270 (806)
Q Consensus 195 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~--~~~~~~~~~~~-~~~s~iivTtr~- 270 (806)
.+.+..+.++ +++++... ..-..++.-++|||++.... .++.+...+.. ....++|+||.+
T Consensus 95 Aas~rgVDdI-ReLIe~a~--------------~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 95 AASNRGVDEM-AALLERAV--------------YAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred ccccccHHHH-HHHHHHHH--------------hccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 3322222221 11111110 00123456689999998643 35555554544 557788887776
Q ss_pred ------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch-HHHHH
Q 037138 271 ------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP-LALIT 321 (806)
Q Consensus 271 ------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~ 321 (806)
.+.++.++.++..+.+.+.+..+.... -.+....|++.++|.. -|+..
T Consensus 160 ~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i---d~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 160 QKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF---EPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred hhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 789999999999999988875443222 2567788999998854 45444
No 61
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=1.5e-06 Score=99.31 Aligned_cols=166 Identities=17% Similarity=0.189 Sum_probs=106.6
Q ss_pred CccccchHHHHHHHHHhcCCCceE-EEEEccCCCCHHHHHHHHHhhcCCCCCC-------------------CCeEEEEE
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGI-IGLYGMGGVGKTTLLAQINNKFLDTPND-------------------FDVVIWVV 194 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~~~-------------------F~~~~wv~ 194 (806)
..+||.+..++.|.+++..+++.- +.++|+.|+||||+|+.+++... -... |.-++++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln-ce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN-CEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc-CccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 468999999999999998776655 58999999999999999998862 1111 11123332
Q ss_pred eCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-
Q 037138 195 VSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL- 270 (806)
Q Consensus 195 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~- 270 (806)
.+....+..+ +.|.+.+. ..-..+++-++|||++... ...+.+...+-. ....++|++|..
T Consensus 95 Aas~~kVDdI-ReLie~v~--------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~ 159 (944)
T PRK14949 95 AASRTKVDDT-RELLDNVQ--------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDP 159 (944)
T ss_pred cccccCHHHH-HHHHHHHH--------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCc
Confidence 2211122221 22222111 0112467789999999753 344555444444 445666665544
Q ss_pred ------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHH
Q 037138 271 ------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLAL 319 (806)
Q Consensus 271 ------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 319 (806)
.|++++|+.++....+.+.+...... --.+....|++.++|.|--+
T Consensus 160 ~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~---~edeAL~lIA~~S~Gd~R~A 217 (944)
T PRK14949 160 QKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP---FEAEALTLLAKAANGSMRDA 217 (944)
T ss_pred hhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 88999999999999998876433211 12567888999999988543
No 62
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.54 E-value=9.6e-07 Score=94.78 Aligned_cols=180 Identities=15% Similarity=0.137 Sum_probs=103.5
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCC-eEEEEEeCCcccH--HHHHH--HHH
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFD-VVIWVVVSKDMQL--ERIQE--KIG 209 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~--~~~~~--~i~ 209 (806)
..++|++..++.+.+++..+..+.+.++|++|+||||+|+.+++... ...+. ..+.+++++-.+. ..+.. ...
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFDQGKKYLVEDPRFA 92 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhhcchhhhhcCcchh
Confidence 46899999999999999887777788999999999999999998762 22222 2344444321100 00000 000
Q ss_pred HHhCCC--CCCCHHHHHHHHH-H---Hh--CCCcEEEEEecCCCcc--CcccccccCCC-CCCcEEEEecCC--------
Q 037138 210 ERIGLL--ENRSLEERASGIF-K---IL--SKKKFLLLLDDVWERI--DLTKVGIPFPS-KNTSKVVFTTRL-------- 270 (806)
Q Consensus 210 ~~l~~~--~~~~~~~~~~~l~-~---~l--~~k~~LlvlDdv~~~~--~~~~~~~~~~~-~~~s~iivTtr~-------- 270 (806)
...+.. .........+.+. . .. .+.+-+||+||+.... ....+...+.. ...+++|+||..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L 172 (337)
T PRK12402 93 HFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPI 172 (337)
T ss_pred hhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhh
Confidence 000000 0001111111111 1 11 2345589999996532 22233333333 445677777644
Q ss_pred -----ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHH
Q 037138 271 -----IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLAL 319 (806)
Q Consensus 271 -----~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 319 (806)
.+.+.+++.++...++...+....... -.+....+++.++|.+-.+
T Consensus 173 ~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~---~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 173 RSRCLPLFFRAPTDDELVDVLESIAEAEGVDY---DDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred cCCceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 677889999998888887764332111 1567788888888875443
No 63
>PRK08727 hypothetical protein; Validated
Probab=98.54 E-value=9.1e-07 Score=88.66 Aligned_cols=151 Identities=13% Similarity=0.076 Sum_probs=90.4
Q ss_pred cccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC
Q 037138 137 IVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE 216 (806)
Q Consensus 137 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 216 (806)
++|-...+..+...........+.|+|.+|+|||+|++.+++... .....+.|+++.+ ....+.
T Consensus 22 ~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~------- 85 (233)
T PRK08727 22 IAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLR------- 85 (233)
T ss_pred cCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHH-------
Confidence 344444444444443334445799999999999999999998862 2233566776422 111111
Q ss_pred CCCHHHHHHHHHHHhCCCcEEEEEecCCCcc---Ccc-cccccCCC--CCCcEEEEecCC--------------------
Q 037138 217 NRSLEERASGIFKILSKKKFLLLLDDVWERI---DLT-KVGIPFPS--KNTSKVVFTTRL-------------------- 270 (806)
Q Consensus 217 ~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~---~~~-~~~~~~~~--~~~s~iivTtr~-------------------- 270 (806)
...+.+ .+.-+||+||+.... .+. .+...+.. ..|..||+|++.
T Consensus 86 ---------~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~ 155 (233)
T PRK08727 86 ---------DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCI 155 (233)
T ss_pred ---------HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCc
Confidence 111122 233489999997432 222 22222222 456779999986
Q ss_pred ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch
Q 037138 271 IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP 316 (806)
Q Consensus 271 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 316 (806)
.+++++++.++-..++.+++.......+ ++....|++.++|-.
T Consensus 156 ~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~ 198 (233)
T PRK08727 156 RIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGEREL 198 (233)
T ss_pred eEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCH
Confidence 6788999999998888886643221111 566777888777554
No 64
>PTZ00202 tuzin; Provisional
Probab=98.53 E-value=6.2e-06 Score=86.24 Aligned_cols=147 Identities=17% Similarity=0.162 Sum_probs=97.5
Q ss_pred CCccccchHHHHHHHHHhcC---CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHH
Q 037138 134 EPTIVGLNSTLEKVWRCLGE---ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGE 210 (806)
Q Consensus 134 ~~~~~gr~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 210 (806)
.+.|+||+.+..++...|.+ +..+++.|.|++|+|||||++.+.... . + ..++++.. +..++++.++.
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~----~-~qL~vNpr---g~eElLr~LL~ 331 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G----M-PAVFVDVR---GTEDTLRSVVK 331 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C----c-eEEEECCC---CHHHHHHHHHH
Confidence 46899999999999998854 235699999999999999999999765 1 1 13333333 67999999999
Q ss_pred HhCCCCCCCHHHHHHHHHHHh-----C-CCcEEEEEecCCCccCcccccc---cCCC-CCCcEEEEe-------cCC---
Q 037138 211 RIGLLENRSLEERASGIFKIL-----S-KKKFLLLLDDVWERIDLTKVGI---PFPS-KNTSKVVFT-------TRL--- 270 (806)
Q Consensus 211 ~l~~~~~~~~~~~~~~l~~~l-----~-~k~~LlvlDdv~~~~~~~~~~~---~~~~-~~~s~iivT-------tr~--- 270 (806)
+++.+......++.+.+.+.+ . +++.+||+-= .+...+..+.. .+.. ..-|.|++- .-+
T Consensus 332 ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~l 410 (550)
T PTZ00202 332 ALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLL 410 (550)
T ss_pred HcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccC
Confidence 999865444445555555443 3 6777777652 22233322211 1111 334555542 111
Q ss_pred ----ceecccCChHHHHHHHHhhh
Q 037138 271 ----IFKVECLRDKEAWELFLDKV 290 (806)
Q Consensus 271 ----~~~l~~L~~~e~~~lf~~~~ 290 (806)
.|.+++++.++|.+.-.+..
T Consensus 411 prldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 411 PRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred ccceeEecCCCCHHHHHHHHhhcc
Confidence 78899999999998876543
No 65
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.53 E-value=7.7e-08 Score=73.87 Aligned_cols=58 Identities=29% Similarity=0.516 Sum_probs=34.0
Q ss_pred CCCEEEecCCCccccCh-hhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeeccc
Q 037138 529 SLQYLNLSKTSIRELPK-ELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCD 587 (806)
Q Consensus 529 ~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~ 587 (806)
+|++|++++|+++.+|. .+..+++|++|++++|. +..+|++.|..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666665553 44556666666666555 355555556666666666666554
No 66
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.52 E-value=2e-06 Score=82.39 Aligned_cols=154 Identities=18% Similarity=0.201 Sum_probs=83.6
Q ss_pred CccccchHHHHHHHHHhc-----CCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLG-----EERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIG 209 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 209 (806)
.+|||.++.++.+.-++. .+....+.+||++|+||||||+.+++.. ...|. +.+.+.-....++ ..++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k~~dl-~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEKAGDL-AAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--SCHHH-HHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhhHHHH-HHHH
Confidence 468999988887654442 2457889999999999999999999997 33442 2222110011111 1111
Q ss_pred HHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cC-------cccccc--cCCC-----------CCCcEEEEe
Q 037138 210 ERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWER--ID-------LTKVGI--PFPS-----------KNTSKVVFT 267 (806)
Q Consensus 210 ~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~-------~~~~~~--~~~~-----------~~~s~iivT 267 (806)
. .+ +++-+|++|++... .+ .++... .... .+=+-|=.|
T Consensus 97 ~-------------------~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT 156 (233)
T PF05496_consen 97 T-------------------NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT 156 (233)
T ss_dssp H-------------------T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE
T ss_pred H-------------------hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee
Confidence 1 12 24557778888642 11 111100 0111 123445568
Q ss_pred cCC-------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHH
Q 037138 268 TRL-------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLA 318 (806)
Q Consensus 268 tr~-------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 318 (806)
||. ..+++..+.+|-..+..+.+..-... --++.+.+|++.|.|-|--
T Consensus 157 Tr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~---i~~~~~~~Ia~rsrGtPRi 217 (233)
T PF05496_consen 157 TRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE---IDEDAAEEIARRSRGTPRI 217 (233)
T ss_dssp SSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E---E-HHHHHHHHHCTTTSHHH
T ss_pred ccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC---cCHHHHHHHHHhcCCChHH
Confidence 887 45899999999999999887543311 1267899999999999943
No 67
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.52 E-value=7.2e-08 Score=105.89 Aligned_cols=176 Identities=27% Similarity=0.314 Sum_probs=88.8
Q ss_pred CCCccccccccccchhcchhHhhccCC-cccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEE
Q 037138 478 TCPHLLSLFPNINRLKTIARRFFDFMP-SLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYL 556 (806)
Q Consensus 478 ~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L 556 (806)
..+.+..|.+.+|.+..+++. ...+. +|+.|++++| .+..+|..++.+++|+.|++++|++..+|...+.+++|+.|
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 334556666666655555543 23332 5666666666 44455555566666666666666666666555556666666
Q ss_pred ecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhchh
Q 037138 557 NLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSHE 636 (806)
Q Consensus 557 ~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~ 636 (806)
++++|+ +..+|.. +..+..|++|.+++|..... ...+..+.++..+.+..|....+. ..
T Consensus 192 ~ls~N~-i~~l~~~-~~~~~~L~~l~~~~N~~~~~--------------~~~~~~~~~l~~l~l~~n~~~~~~-----~~ 250 (394)
T COG4886 192 DLSGNK-ISDLPPE-IELLSALEELDLSNNSIIEL--------------LSSLSNLKNLSGLELSNNKLEDLP-----ES 250 (394)
T ss_pred eccCCc-cccCchh-hhhhhhhhhhhhcCCcceec--------------chhhhhcccccccccCCceeeecc-----ch
Confidence 666665 4555543 23444466666665532211 123344444444444433332210 11
Q ss_pred hccccccceeccCCCCCcccccccccccccceEeeccccCc
Q 037138 637 LQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNL 677 (806)
Q Consensus 637 l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 677 (806)
......+..++...+..+... .++.+.+|+.|+++++...
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~-~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSIS-SLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred hccccccceeccccccccccc-cccccCccCEEeccCcccc
Confidence 111222333333333332222 3667788888888887543
No 68
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=2.7e-06 Score=91.38 Aligned_cols=165 Identities=17% Similarity=0.183 Sum_probs=102.1
Q ss_pred CccccchHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHhhcCCCCCC-------------------CCeEEEEE
Q 037138 135 PTIVGLNSTLEKVWRCLGEERV-GIIGLYGMGGVGKTTLLAQINNKFLDTPND-------------------FDVVIWVV 194 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~-------------------F~~~~wv~ 194 (806)
..++|.+..++.+.+.+..+++ ..+.++|+.|+||||+|+.+++.. ..... +.-..++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l-~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~ 94 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL-NCQNGITSNPCRKCIICKEIEKGLCLDLIEID 94 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHhcCCCCceEEec
Confidence 4689999999999998877654 467899999999999999999876 11110 11122222
Q ss_pred eCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc--CcccccccCCC-CCCcEEEEecCC-
Q 037138 195 VSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERI--DLTKVGIPFPS-KNTSKVVFTTRL- 270 (806)
Q Consensus 195 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~--~~~~~~~~~~~-~~~s~iivTtr~- 270 (806)
.+....+.+ .+++.+.+.. .-..+++-++|+|++.... .++.+...+.. ....++|++|.+
T Consensus 95 ~~~~~~v~~-ir~i~~~~~~--------------~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~ 159 (363)
T PRK14961 95 AASRTKVEE-MREILDNIYY--------------SPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDV 159 (363)
T ss_pred ccccCCHHH-HHHHHHHHhc--------------CcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCCh
Confidence 111111111 1112111100 0013456699999997543 34445444444 456677776655
Q ss_pred ------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHH
Q 037138 271 ------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLA 318 (806)
Q Consensus 271 ------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 318 (806)
.+++.+++.++..+.+...+...... --++.+..|++.++|.|-.
T Consensus 160 ~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~---i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 160 EKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID---TDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred HhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHH
Confidence 78999999999998888766432211 1145678899999998753
No 69
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.2e-08 Score=99.29 Aligned_cols=207 Identities=19% Similarity=0.147 Sum_probs=112.6
Q ss_pred cccEEEccCCCccc-ccCcccCCCCCCCEEEecCCCcc-ccChhhhcCCCCcEEecCCCccccccc-cccccCCCCCcEE
Q 037138 505 SLTVLNLSNNGFLT-KLRPGISKLVSLQYLNLSKTSIR-ELPKELKALVNLKYLNLEHSRYLHTIP-RQLICSFSMLHVL 581 (806)
Q Consensus 505 ~L~~L~Ls~~~~~~-~lp~~i~~l~~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~~~~~l~~L~~L 581 (806)
.|++||||+..+.. .+-.-+..|.+|+.|.|.++.+. .+-..+.+-.+|+.||++.|.-++... .-++.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46677777663322 12233455666777777666665 444455666667777777664322211 1234566666667
Q ss_pred EeecccCCCCCCCCccccCCccchHHHhcCC-CCCCeeeEEecchhhHHHhhhchhhccccccceeccCCCCCccccc-c
Q 037138 582 RMVNCDYSGKIPLDSILFGGCESLVEELISL-KHLNVLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIY-S 659 (806)
Q Consensus 582 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~-~ 659 (806)
+++.|...... +.....+. ++|..|++++..- |.....++ -
T Consensus 266 NlsWc~l~~~~------------Vtv~V~hise~l~~LNlsG~rr-------------------------nl~~sh~~tL 308 (419)
T KOG2120|consen 266 NLSWCFLFTEK------------VTVAVAHISETLTQLNLSGYRR-------------------------NLQKSHLSTL 308 (419)
T ss_pred CchHhhccchh------------hhHHHhhhchhhhhhhhhhhHh-------------------------hhhhhHHHHH
Confidence 66666554321 10111111 2333343332110 00000111 2
Q ss_pred cccccccceEeeccccCccccceeeecccCCcCCCCccccCCCcceEeeecCccchhhhcccccCccccccCCCCccccc
Q 037138 660 LADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKL 739 (806)
Q Consensus 660 l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L 739 (806)
...+++|.+|||++|..++. .....+..++.|++|.++.|.. -+|..+-.+...|+|
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~------------~~~~~~~kf~~L~~lSlsRCY~-----------i~p~~~~~l~s~psl 365 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKN------------DCFQEFFKFNYLQHLSLSRCYD-----------IIPETLLELNSKPSL 365 (419)
T ss_pred HHhCCceeeeccccccccCc------------hHHHHHHhcchheeeehhhhcC-----------CChHHeeeeccCcce
Confidence 34578888888888754321 1122456789999999999975 456666677788999
Q ss_pred ceecccccccccccccCCCCCchHHHHHccCCCCCCCCCCCC
Q 037138 740 QYLHLRALPSLKSIYWNALPSHIWKKLIMGCAGLKKLPLDSN 781 (806)
Q Consensus 740 ~~L~L~~~~~L~~l~~~~~~~~~L~~ll~~c~~L~~L~l~~n 781 (806)
.+|++.+|- +-...+.+...||+|+.--.-+|
T Consensus 366 ~yLdv~g~v----------sdt~mel~~e~~~~lkin~q~~~ 397 (419)
T KOG2120|consen 366 VYLDVFGCV----------SDTTMELLKEMLSHLKINCQHFN 397 (419)
T ss_pred EEEEecccc----------CchHHHHHHHhCccccccceeee
Confidence 999998752 22233333556787765433333
No 70
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.49 E-value=2.8e-07 Score=92.14 Aligned_cols=90 Identities=20% Similarity=0.217 Sum_probs=63.3
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCc--ccHHHHHHHH-----HHHhCCCCCCCH---HHH
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKD--MQLERIQEKI-----GERIGLLENRSL---EER 223 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i-----~~~l~~~~~~~~---~~~ 223 (806)
..-..++|+|++|+|||||++.+++.. . ..+|+.++|+++... +++.++++.+ +.+++.+..... ...
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l-~-~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAI-T-KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc-c-cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 345689999999999999999999987 3 348999999997776 7999999999 333332110000 011
Q ss_pred HHHHHHH-hCCCcEEEEEecCCC
Q 037138 224 ASGIFKI-LSKKKFLLLLDDVWE 245 (806)
Q Consensus 224 ~~~l~~~-l~~k~~LlvlDdv~~ 245 (806)
......+ -.++++++++|++..
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHH
Confidence 1112221 358999999999964
No 71
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.49 E-value=5.8e-08 Score=97.00 Aligned_cols=244 Identities=19% Similarity=0.168 Sum_probs=132.4
Q ss_pred CCCCccccccccccchhc----chhHhhccCCcccEEEccCCCcccc----cCc-------ccCCCCCCCEEEecCCCcc
Q 037138 477 PTCPHLLSLFPNINRLKT----IARRFFDFMPSLTVLNLSNNGFLTK----LRP-------GISKLVSLQYLNLSKTSIR 541 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~~~~~~~----lp~-------~i~~l~~L~~L~Ls~n~l~ 541 (806)
.....+..+++++|.+.. .....+.+.+.|+.-++|+- +++. +|+ .+-.+++|++||||+|-+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 344566777777775532 22233566677888887765 4432 332 2344567888888888665
Q ss_pred -ccC----hhhhcCCCCcEEecCCCcccccccccc-------------ccCCCCCcEEEeecccCCCCCCCCccccCCcc
Q 037138 542 -ELP----KELKALVNLKYLNLEHSRYLHTIPRQL-------------ICSFSMLHVLRMVNCDYSGKIPLDSILFGGCE 603 (806)
Q Consensus 542 -~lp----~~i~~L~~L~~L~L~~~~~l~~lp~~~-------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 603 (806)
.-+ .-+.+++.|++|.|.+|. ++...... ..+-++|+++....|.+... +..
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~---------ga~ 175 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG---------GAT 175 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc---------cHH
Confidence 222 235667788888888776 33222111 33456777777777655432 112
Q ss_pred chHHHhcCCCCCCeeeEEecchhhHHHhhhchhhccccccceeccCCCCCcccc-----cccccccccceEeeccccCcc
Q 037138 604 SLVEELISLKHLNVLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNI-----YSLADLKHLDKLDLIYCRNLE 678 (806)
Q Consensus 604 ~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~-----~~l~~l~~L~~L~L~~~~~~~ 678 (806)
.....+...+.|+.+.+..|.+..-........+..|..+..|+..+|..+... ..++.+++|+.|++++|..-.
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 344556666777777777766543222222233444555555555555433221 145566777777777773211
Q ss_pred ccceeeecccCCcCCCCcc-ccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceecccccc
Q 037138 679 EFKKVMIDFCIKLREVTWL-VFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALP 748 (806)
Q Consensus 679 ~L~~L~l~~c~~l~~~~~l-~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~ 748 (806)
. ........+ ...|+|+.|.+.+|.+..+-.. .+-. ....-|.|+.|+|++|.
T Consensus 256 ~---------Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~-----~la~---~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 256 E---------GAIAFVDALKESAPSLEVLELAGNEITRDAAL-----ALAA---CMAEKPDLEKLNLNGNR 309 (382)
T ss_pred c---------cHHHHHHHHhccCCCCceeccCcchhHHHHHH-----HHHH---HHhcchhhHHhcCCccc
Confidence 0 000000111 2368889999998887543211 1111 12224788888888743
No 72
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=2.6e-06 Score=94.35 Aligned_cols=166 Identities=16% Similarity=0.160 Sum_probs=105.7
Q ss_pred CccccchHHHHHHHHHhcCCCce-EEEEEccCCCCHHHHHHHHHhhcCCC----C-------------------CCCCeE
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVG-IIGLYGMGGVGKTTLLAQINNKFLDT----P-------------------NDFDVV 190 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~----~-------------------~~F~~~ 190 (806)
.++||.+..++.|.+++..+++. .+.++|+.|+||||+|+.+.+...-. . +.|.-+
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDv 95 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDY 95 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcc
Confidence 36899999999999999877654 56899999999999999998876210 0 011112
Q ss_pred EEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEE
Q 037138 191 IWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFK-ILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVF 266 (806)
Q Consensus 191 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iiv 266 (806)
++++.+...++.++- ++++ .+.. -..++.-++|+|++... ...+.+...+.. ..+..+|+
T Consensus 96 iEIdAas~~gVDdIR-eLie---------------~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FIL 159 (700)
T PRK12323 96 IEMDAASNRGVDEMA-QLLD---------------KAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFIL 159 (700)
T ss_pred eEecccccCCHHHHH-HHHH---------------HHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEE
Confidence 333322222222111 1111 1110 12456779999999754 345555555555 45666666
Q ss_pred ecCC-------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHH
Q 037138 267 TTRL-------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLAL 319 (806)
Q Consensus 267 Ttr~-------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 319 (806)
+|.+ .+.++.++.++..+.+.+.+....... -.+....|++.++|.|.-+
T Consensus 160 aTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~---d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 160 ATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH---EVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred EeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 5554 889999999999999888765433111 1455688999999988544
No 73
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.48 E-value=8.1e-07 Score=82.52 Aligned_cols=120 Identities=19% Similarity=0.124 Sum_probs=73.5
Q ss_pred ccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCC
Q 037138 138 VGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLEN 217 (806)
Q Consensus 138 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 217 (806)
+|++..++++...+.....+.+.|+|++|+||||+|+.+++.. . ..-..++++..++..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~-~--~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL-F--RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh-h--cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 4788899999998877677889999999999999999999987 2 222456677665543322221111100
Q ss_pred CCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCcccccccCCC-------CCCcEEEEecCC
Q 037138 218 RSLEERASGIFKILSKKKFLLLLDDVWER--IDLTKVGIPFPS-------KNTSKVVFTTRL 270 (806)
Q Consensus 218 ~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-------~~~s~iivTtr~ 270 (806)
............++.++|+||++.. .....+...+.. ..+..||+||..
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~ 129 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNR 129 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCc
Confidence 0011112223467789999999853 111111111111 257788888885
No 74
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.47 E-value=4.1e-06 Score=89.17 Aligned_cols=166 Identities=14% Similarity=0.186 Sum_probs=103.0
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEe--CCcccHHHHHHHHHHHh
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVV--SKDMQLERIQEKIGERI 212 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~i~~~l 212 (806)
.+++|++..++.+..++.....+.+.++|++|+||||+|+.+++... ...+. ..++.+ +.......+...+ .++
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~-~~~i~~~~~~~~~~~~~~~~i-~~~ 92 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWR-ENFLELNASDERGIDVIRNKI-KEF 92 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCccc-cceEEeccccccchHHHHHHH-HHH
Confidence 35789999999999999877777789999999999999999999862 12222 122322 2222222111111 111
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc--CcccccccCCC-CCCcEEEEecCC-------------ceeccc
Q 037138 213 GLLENRSLEERASGIFKILSKKKFLLLLDDVWERI--DLTKVGIPFPS-KNTSKVVFTTRL-------------IFKVEC 276 (806)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~--~~~~~~~~~~~-~~~s~iivTtr~-------------~~~l~~ 276 (806)
.... ......+-++++|++.... ....+...+.. ...+.+|+++.. .+.+.+
T Consensus 93 ~~~~------------~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~ 160 (319)
T PRK00440 93 ARTA------------PVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSP 160 (319)
T ss_pred HhcC------------CCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCC
Confidence 0000 0011345689999986432 23334333433 445677776643 778899
Q ss_pred CChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHH
Q 037138 277 LRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLAL 319 (806)
Q Consensus 277 L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 319 (806)
++.++....+...+......- -.+....+++.++|.+--+
T Consensus 161 l~~~ei~~~l~~~~~~~~~~i---~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 161 LKKEAVAERLRYIAENEGIEI---TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred CCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 999999888888775433211 1567888899999887543
No 75
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.45 E-value=3.1e-08 Score=98.91 Aligned_cols=257 Identities=21% Similarity=0.195 Sum_probs=150.4
Q ss_pred hhccCCcccEEEccCCCcccc----cCcccCCCCCCCEEEecCC---Cc-cccChh-------hhcCCCCcEEecCCCcc
Q 037138 499 FFDFMPSLTVLNLSNNGFLTK----LRPGISKLVSLQYLNLSKT---SI-RELPKE-------LKALVNLKYLNLEHSRY 563 (806)
Q Consensus 499 ~~~~l~~L~~L~Ls~~~~~~~----lp~~i~~l~~L~~L~Ls~n---~l-~~lp~~-------i~~L~~L~~L~L~~~~~ 563 (806)
....+..+..|+||+|.+-.. +.+.+.+.++|+.-++|+- .. .++|+. +-.+++|++||||.|-+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 366789999999999943322 4456677789999999863 22 266654 34567999999999976
Q ss_pred cccccc---ccccCCCCCcEEEeecccCCCCCCCCccccCCc---cchHHHhcCCCCCCeeeEEecchhhHHHhhhchhh
Q 037138 564 LHTIPR---QLICSFSMLHVLRMVNCDYSGKIPLDSILFGGC---ESLVEELISLKHLNVLTIALKSFFALQRFLSSHEL 637 (806)
Q Consensus 564 l~~lp~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l 637 (806)
-..-++ .++.++++|++|+|.+|.+... .+..++.. -......++-++|+.+.+..|.+.+.........+
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~---ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPE---AGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChh---HHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 444333 3467799999999999976532 00000000 00122344557899999998887654443333333
Q ss_pred ccccccceeccCCCCC--ccc---ccccccccccceEeeccccCccccceeeecccCCcCCCCccccCCCcceEeeecCc
Q 037138 638 QNCTKSLNLRYYDDSK--SFN---IYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFAPNLKSIHIANCH 712 (806)
Q Consensus 638 ~~~~~~l~L~~~~~~~--~~~---~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~~~ 712 (806)
..+..+-.+....|.. .+. ...+..+++|+.|+|.+|..... + +...-..++.+|+|+.|++++|.
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e-------g--s~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE-------G--SVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH-------H--HHHHHHHhcccchheeecccccc
Confidence 3333333333333321 111 13577789999999988742210 0 00001134556889999999997
Q ss_pred cchhhhcccccCccccccCCCCcccccceecccccccccccccCCCCCchHHHH---HccCCCCCCCCCCCCcc
Q 037138 713 FMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKSIYWNALPSHIWKKL---IMGCAGLKKLPLDSNSR 783 (806)
Q Consensus 713 ~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~l---l~~c~~L~~L~l~~n~~ 783 (806)
.-.. ....+-.. -...+|+|+.|.+.++. .....-..+ +...|.|..|.+++|.+
T Consensus 253 l~~~-----Ga~a~~~a--l~~~~p~L~vl~l~gNe---------It~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 253 LENE-----GAIAFVDA--LKESAPSLEVLELAGNE---------ITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccc-----cHHHHHHH--HhccCCCCceeccCcch---------hHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6211 00011111 11236889999888732 111111112 45678899999999985
No 76
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=4.1e-06 Score=93.00 Aligned_cols=166 Identities=16% Similarity=0.150 Sum_probs=105.5
Q ss_pred CccccchHHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHhhcCCCC-------------------CCCCeEEEEE
Q 037138 135 PTIVGLNSTLEKVWRCLGEER-VGIIGLYGMGGVGKTTLLAQINNKFLDTP-------------------NDFDVVIWVV 194 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~~F~~~~wv~ 194 (806)
..++|.+..++.+.+++..++ ...+.++|+.|+||||+|+.+++... -. +.|.-++.++
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln-C~~~~~~~pCg~C~sC~~I~~g~hpDviEID 93 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN-CETGVTSTPCEVCATCKAVNEGRFIDLIEID 93 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCcCCCCCCCccCHHHHHHhcCCCCceEEec
Confidence 458999999999999998765 45779999999999999999988751 11 1111223333
Q ss_pred eCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-
Q 037138 195 VSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL- 270 (806)
Q Consensus 195 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~- 270 (806)
.+....+.++ +.++.... ..-..+++-++|+|++... .....+...+.. ..+..+|++|.+
T Consensus 94 AAs~~~VddI-Reli~~~~--------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 94 AASRTKVEDT-RELLDNVP--------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred ccccCCHHHH-HHHHHHHh--------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECCh
Confidence 2222222221 11111110 0112366779999999753 234444444444 456677777765
Q ss_pred ------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHH
Q 037138 271 ------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLAL 319 (806)
Q Consensus 271 ------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 319 (806)
.+++.+++.++....+.+.+....... -.+....|++.++|.+-.+
T Consensus 159 ~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i---d~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 159 QKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAA---DQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred HhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 788999999999999888775433211 1556788999999877443
No 77
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.44 E-value=1.9e-06 Score=86.42 Aligned_cols=152 Identities=16% Similarity=0.155 Sum_probs=89.8
Q ss_pred ccccchH-HHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCC
Q 037138 136 TIVGLNS-TLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGL 214 (806)
Q Consensus 136 ~~~gr~~-~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 214 (806)
.++|... .+..+.++........+.|+|++|+|||+|++.+++... ..-..+.++.+.....
T Consensus 24 f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~-------------- 86 (235)
T PRK08084 24 FYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW-------------- 86 (235)
T ss_pred cccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh--------------
Confidence 3456333 344444444445557899999999999999999998762 2223566766532100
Q ss_pred CCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc---cCccc-ccccCCC--CCC-cEEEEecCC-----------------
Q 037138 215 LENRSLEERASGIFKILSKKKFLLLLDDVWER---IDLTK-VGIPFPS--KNT-SKVVFTTRL----------------- 270 (806)
Q Consensus 215 ~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~---~~~~~-~~~~~~~--~~~-s~iivTtr~----------------- 270 (806)
... .+.+.+.. --+|++||+... ..|+. +...+.. ..| .++|+||+.
T Consensus 87 ----~~~----~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~ 157 (235)
T PRK08084 87 ----FVP----EVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLD 157 (235)
T ss_pred ----hhH----HHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHh
Confidence 001 11111211 237899999643 23332 2222222 234 479999986
Q ss_pred ---ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch
Q 037138 271 ---IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP 316 (806)
Q Consensus 271 ---~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 316 (806)
.+.++++++++-.+++.+++....... -+++...|++.+.|..
T Consensus 158 ~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l---~~~v~~~L~~~~~~d~ 203 (235)
T PRK08084 158 WGQIYKLQPLSDEEKLQALQLRARLRGFEL---PEDVGRFLLKRLDREM 203 (235)
T ss_pred CCceeeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhhcCCH
Confidence 678889988888888877664322111 1567777888777654
No 78
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=1.8e-06 Score=93.17 Aligned_cols=175 Identities=14% Similarity=0.087 Sum_probs=102.1
Q ss_pred CccccchHHHHHHHHHhcCCCce-EEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhC
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVG-IIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIG 213 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 213 (806)
.+++|.+..+..+..++..+++. .+.++|+.|+||||+|+.+++... ....... ..+.....-..+...+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln--ce~~~~~--~pCg~C~sC~~i~~g~~~dvi 93 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN--CENPIGN--EPCNECTSCLEITKGISSDVL 93 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC--cccccCc--cccCCCcHHHHHHccCCccce
Confidence 45899999999999999887764 589999999999999999998762 1111000 000111011111111000000
Q ss_pred -CC--CCCCHH---HHHHHHHH-HhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-------------
Q 037138 214 -LL--ENRSLE---ERASGIFK-ILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL------------- 270 (806)
Q Consensus 214 -~~--~~~~~~---~~~~~l~~-~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~------------- 270 (806)
.. .....+ +..+.+.. -..++.-++|+|++... ..++.+...+.. .....+|.+|..
T Consensus 94 EIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq 173 (484)
T PRK14956 94 EIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQ 173 (484)
T ss_pred eechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhh
Confidence 00 001111 11112211 12456779999999753 345555444444 345555555543
Q ss_pred ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch
Q 037138 271 IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP 316 (806)
Q Consensus 271 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 316 (806)
.|.+.+++.++..+.+.+.+......- -.+....|++.++|.+
T Consensus 174 ~~~f~~ls~~~i~~~L~~i~~~Egi~~---e~eAL~~Ia~~S~Gd~ 216 (484)
T PRK14956 174 DFIFKKVPLSVLQDYSEKLCKIENVQY---DQEGLFWIAKKGDGSV 216 (484)
T ss_pred eeeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCChH
Confidence 689999999999988888764433111 2567788999999887
No 79
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=4.7e-06 Score=92.40 Aligned_cols=179 Identities=17% Similarity=0.132 Sum_probs=104.9
Q ss_pred CccccchHHHHHHHHHhcCCCce-EEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhC
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVG-IIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIG 213 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 213 (806)
.+++|.+..++.+..++..+... .+.++|++|+||||+|+.+++.. ...+.+...+|+|.+... +....+.-+..+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESCLA-VRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhhHH-HhcCCCCceEEec
Confidence 35899999999999988776654 56999999999999999999886 211222223333321100 0000000000000
Q ss_pred CCCCCCHHHHHHHHHHH-----hCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-------------ce
Q 037138 214 LLENRSLEERASGIFKI-----LSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL-------------IF 272 (806)
Q Consensus 214 ~~~~~~~~~~~~~l~~~-----l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~-------------~~ 272 (806)
.......+. .+.+.+. ..+++-++|+|+++.. ..++.+...+.. ...+.+|++|.. .+
T Consensus 92 ~~~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~ 170 (504)
T PRK14963 92 AASNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHF 170 (504)
T ss_pred ccccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEE
Confidence 000111111 1112221 2356679999999754 234445444444 445555555543 78
Q ss_pred ecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHH
Q 037138 273 KVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLAL 319 (806)
Q Consensus 273 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 319 (806)
.+.+++.++....+.+.+....... -.+....|++.++|.+--+
T Consensus 171 ~f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 171 RFRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDA 214 (504)
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 9999999999999998775433211 2567888999999987544
No 80
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=4.9e-06 Score=91.79 Aligned_cols=164 Identities=18% Similarity=0.187 Sum_probs=102.9
Q ss_pred CccccchHHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCC-----------------------CeE
Q 037138 135 PTIVGLNSTLEKVWRCLGEER-VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDF-----------------------DVV 190 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F-----------------------~~~ 190 (806)
.+++|.+..++.+...+..++ ...+-++|+.|+||||+|+.+++... -.... .-+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln-c~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv 99 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN-CSALITENTTIKTCEQCTNCISFNNHNHPDI 99 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CccccccCcCcCCCCCChHHHHHhcCCCCcE
Confidence 357999999999988776665 45788999999999999999998762 11110 011
Q ss_pred EEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEe
Q 037138 191 IWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFT 267 (806)
Q Consensus 191 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivT 267 (806)
+.++......+.++. .+++... ..-+.+++-++|+|+++.. ..++.+...+.. ...+.+|++
T Consensus 100 ~eidaas~~~vd~Ir-~iie~a~--------------~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~a 164 (507)
T PRK06645 100 IEIDAASKTSVDDIR-RIIESAE--------------YKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFA 164 (507)
T ss_pred EEeeccCCCCHHHHH-HHHHHHH--------------hccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEE
Confidence 222222222222211 1111110 0113467779999999853 345555555544 455666654
Q ss_pred cCC-------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchH
Q 037138 268 TRL-------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPL 317 (806)
Q Consensus 268 tr~-------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 317 (806)
|.. .+.+.+++.++....+.+.+....... -.+....|++.++|.+-
T Consensus 165 Tte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i---e~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 165 TTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT---DIEALRIIAYKSEGSAR 224 (507)
T ss_pred eCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHH
Confidence 433 688999999999999998875433111 14567789999998763
No 81
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=4.3e-06 Score=92.78 Aligned_cols=169 Identities=17% Similarity=0.147 Sum_probs=103.5
Q ss_pred CccccchHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHhhcCCCC------------------CCCCeEEEEEe
Q 037138 135 PTIVGLNSTLEKVWRCLGEERV-GIIGLYGMGGVGKTTLLAQINNKFLDTP------------------NDFDVVIWVVV 195 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~~ 195 (806)
..++|.+..++.+...+..++. ..+.++|+.|+||||+|+.+++...... ..|.-.+++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 4589999999999999977655 4578999999999999999998651100 11223334433
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-
Q 037138 196 SKDMQLERIQEKIGERIGLLENRSLEERASGIFK-ILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL- 270 (806)
Q Consensus 196 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~- 270 (806)
.....+.++ +.+++ .+.. -..+++-++|+|++... ...+.+...+.. ...+.+|++|.+
T Consensus 96 as~~gvd~i-r~ii~---------------~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~ 159 (546)
T PRK14957 96 ASRTGVEET-KEILD---------------NIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDY 159 (546)
T ss_pred ccccCHHHH-HHHHH---------------HHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECCh
Confidence 222222221 12221 1111 12467779999999753 234445444544 445555544433
Q ss_pred ------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch-HHHHHh
Q 037138 271 ------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP-LALITT 322 (806)
Q Consensus 271 ------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~~ 322 (806)
.+++++++.++....+.+.+...... --.+....|++.++|.+ .|+..+
T Consensus 160 ~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~---~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 160 HKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN---SDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred hhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 78999999999888887765432211 12455678888888855 344333
No 82
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=4.9e-06 Score=91.49 Aligned_cols=170 Identities=18% Similarity=0.214 Sum_probs=102.0
Q ss_pred CccccchHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHhhcCCCCC-------------------CCCeEEEEE
Q 037138 135 PTIVGLNSTLEKVWRCLGEERV-GIIGLYGMGGVGKTTLLAQINNKFLDTPN-------------------DFDVVIWVV 194 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------~F~~~~wv~ 194 (806)
..++|.+..++.+...+..+.+ +.+.++|++|+||||+|+.+++... ... .+..++.++
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~-~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN-CENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-cccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 4689999998888888877766 5688999999999999999988751 110 011223333
Q ss_pred eCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-
Q 037138 195 VSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL- 270 (806)
Q Consensus 195 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~- 270 (806)
.+...++..+ +.|.+.... .-..+++-++|+|++... ...+.+...+.. .....+|++|.+
T Consensus 93 aa~~~gid~i-R~i~~~~~~--------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~ 157 (472)
T PRK14962 93 AASNRGIDEI-RKIRDAVGY--------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNL 157 (472)
T ss_pred CcccCCHHHH-HHHHHHHhh--------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCCh
Confidence 3322222222 122211110 012356679999999643 223344334433 333444444432
Q ss_pred ------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCC-chHHHHHhh
Q 037138 271 ------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGG-LPLALITTG 323 (806)
Q Consensus 271 ------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPlai~~~g 323 (806)
.+.+.+++.++....+.+.+......- -.+....|++.++| ++.|+..+-
T Consensus 158 ~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i---~~eal~~Ia~~s~GdlR~aln~Le 220 (472)
T PRK14962 158 EKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI---DREALSFIAKRASGGLRDALTMLE 220 (472)
T ss_pred HhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHHHHH
Confidence 778899999999988888764332111 14567788887764 466666554
No 83
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.38 E-value=5.8e-07 Score=81.63 Aligned_cols=114 Identities=22% Similarity=0.272 Sum_probs=75.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCC--CCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCC--CCHHHHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDT--PNDFDVVIWVVVSKDMQLERIQEKIGERIGLLEN--RSLEERASGIFKI 230 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~l~~~ 230 (806)
+.+++.|+|.+|+|||++++.+.+..... ...-..++|+.+....+...+...|+.+++.... .+..+..+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35689999999999999999999976100 0003467799988888999999999999998763 4677777888888
Q ss_pred hCCCc-EEEEEecCCCc-c--CcccccccCCCCCCcEEEEecC
Q 037138 231 LSKKK-FLLLLDDVWER-I--DLTKVGIPFPSKNTSKVVFTTR 269 (806)
Q Consensus 231 l~~k~-~LlvlDdv~~~-~--~~~~~~~~~~~~~~s~iivTtr 269 (806)
+...+ .+||+||+... . .++.+..... ..+.+||+..+
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~-~~~~~vvl~G~ 124 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN-ESNIKVVLVGT 124 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC-SCBEEEEEEES
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh-CCCCeEEEEEC
Confidence 86554 59999999753 1 1222222212 45556666544
No 84
>PRK09087 hypothetical protein; Validated
Probab=98.37 E-value=4.4e-06 Score=82.95 Aligned_cols=128 Identities=18% Similarity=0.168 Sum_probs=83.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKK 234 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 234 (806)
..+.+.|+|++|+|||+|++.++... . ..+++.. .+..+++. .+.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~-------~~~i~~~------~~~~~~~~-------------------~~~~- 88 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-D-------ALLIHPN------EIGSDAAN-------------------AAAE- 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-C-------CEEecHH------HcchHHHH-------------------hhhc-
Confidence 34679999999999999999998765 1 1244321 11111111 1111
Q ss_pred cEEEEEecCCCcc-CcccccccCCC--CCCcEEEEecCC--------------------ceecccCChHHHHHHHHhhhC
Q 037138 235 KFLLLLDDVWERI-DLTKVGIPFPS--KNTSKVVFTTRL--------------------IFKVECLRDKEAWELFLDKVG 291 (806)
Q Consensus 235 ~~LlvlDdv~~~~-~~~~~~~~~~~--~~~s~iivTtr~--------------------~~~l~~L~~~e~~~lf~~~~~ 291 (806)
-+|++||+.... +-+.+...+.. ..|..||+|++. .+++++++.++-.+++++.+.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 278889996431 22333333333 457889998874 789999999999999998885
Q ss_pred CCccCCCCChHHHHHHHHHHhCCchHHHH
Q 037138 292 EETLDSHLDIPKLAHTLAKECGGLPLALI 320 (806)
Q Consensus 292 ~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 320 (806)
.....-+ +++...|++.+.|..-++.
T Consensus 168 ~~~~~l~---~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 168 DRQLYVD---PHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred HcCCCCC---HHHHHHHHHHhhhhHHHHH
Confidence 4332222 6778888888887766554
No 85
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.37 E-value=9.7e-07 Score=91.83 Aligned_cols=89 Identities=19% Similarity=0.199 Sum_probs=62.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcc--cHHHHHHHHHHHhCCCC-CCCHHHHHH------
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDM--QLERIQEKIGERIGLLE-NRSLEERAS------ 225 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~-~~~~~~~~~------ 225 (806)
.-.-.+|+|++|+||||||+++|+.. . ..+|+.++||.+.+.. .+.++++.|...+-... .........
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I-~-~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSI-T-TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHH-H-hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 44568899999999999999999997 3 3499999999999887 78888888863221111 222211111
Q ss_pred HHHHH--hCCCcEEEEEecCCC
Q 037138 226 GIFKI--LSKKKFLLLLDDVWE 245 (806)
Q Consensus 226 ~l~~~--l~~k~~LlvlDdv~~ 245 (806)
...++ -.+++++|++|++..
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHH
Confidence 11111 368999999999953
No 86
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.36 E-value=2.4e-06 Score=98.46 Aligned_cols=156 Identities=24% Similarity=0.341 Sum_probs=92.8
Q ss_pred ccccchHHHH---HHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHh
Q 037138 136 TIVGLNSTLE---KVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERI 212 (806)
Q Consensus 136 ~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 212 (806)
.++|.+..+. .+.+.+..+....+.++|++|+||||+|+.+++.. ...|. .++.+. ..+.+
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i~d--------- 92 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGVKD--------- 92 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhhHH---------
Confidence 5789888774 46666677777788999999999999999999876 34441 111110 01111
Q ss_pred CCCCCCCHHHHHHHHHHHh--CCCcEEEEEecCCCc--cCcccccccCCCCCCcEEEE--ecCC--------------ce
Q 037138 213 GLLENRSLEERASGIFKIL--SKKKFLLLLDDVWER--IDLTKVGIPFPSKNTSKVVF--TTRL--------------IF 272 (806)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~l--~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~s~iiv--Ttr~--------------~~ 272 (806)
..+..+.....+ .+++.+|||||++.. ...+.+...+ ..|+.++| ||.+ .+
T Consensus 93 -------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l--E~g~IiLI~aTTenp~~~l~~aL~SR~~v~ 163 (725)
T PRK13341 93 -------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV--ENGTITLIGATTENPYFEVNKALVSRSRLF 163 (725)
T ss_pred -------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh--cCceEEEEEecCCChHhhhhhHhhccccce
Confidence 111111222222 256789999999743 2333332221 34555555 3333 68
Q ss_pred ecccCChHHHHHHHHhhhCCCc--c-CCCCC-hHHHHHHHHHHhCCch
Q 037138 273 KVECLRDKEAWELFLDKVGEET--L-DSHLD-IPKLAHTLAKECGGLP 316 (806)
Q Consensus 273 ~l~~L~~~e~~~lf~~~~~~~~--~-~~~~~-~~~~~~~i~~~c~GlP 316 (806)
.+++|+.++...++.+.+.... . ..... -++....|++.+.|..
T Consensus 164 ~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 164 RLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 8999999999999988764110 0 00111 2456678888887753
No 87
>PRK05642 DNA replication initiation factor; Validated
Probab=98.35 E-value=4.6e-06 Score=83.60 Aligned_cols=132 Identities=16% Similarity=0.276 Sum_probs=82.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKK 235 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 235 (806)
...+.|+|..|+|||.|++.+++... ..-..++|++..+ +... ...+.+.+.+-.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~------~~~~----------------~~~~~~~~~~~d 99 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAE------LLDR----------------GPELLDNLEQYE 99 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHH------HHhh----------------hHHHHHhhhhCC
Confidence 36789999999999999999998762 1224567776432 1111 012233333322
Q ss_pred EEEEEecCCCc---cCccc-ccccCCC--CCCcEEEEecCC--------------------ceecccCChHHHHHHHHhh
Q 037138 236 FLLLLDDVWER---IDLTK-VGIPFPS--KNTSKVVFTTRL--------------------IFKVECLRDKEAWELFLDK 289 (806)
Q Consensus 236 ~LlvlDdv~~~---~~~~~-~~~~~~~--~~~s~iivTtr~--------------------~~~l~~L~~~e~~~lf~~~ 289 (806)
+||+||+... ..|+. +...+.. ..|..+|+|++. .+++++++.++-..+++.+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 6889999632 23432 3333433 457789998875 5788999999999888866
Q ss_pred hCCCccCCCCChHHHHHHHHHHhCCch
Q 037138 290 VGEETLDSHLDIPKLAHTLAKECGGLP 316 (806)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~c~GlP 316 (806)
+......-+ +++...|++.+.|-.
T Consensus 179 a~~~~~~l~---~ev~~~L~~~~~~d~ 202 (234)
T PRK05642 179 ASRRGLHLT---DEVGHFILTRGTRSM 202 (234)
T ss_pred HHHcCCCCC---HHHHHHHHHhcCCCH
Confidence 533221111 567777777777654
No 88
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=8.1e-06 Score=92.09 Aligned_cols=166 Identities=16% Similarity=0.171 Sum_probs=102.4
Q ss_pred CccccchHHHHHHHHHhcCCCce-EEEEEccCCCCHHHHHHHHHhhcCCCC------------------CCCCeEEEEEe
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVG-IIGLYGMGGVGKTTLLAQINNKFLDTP------------------NDFDVVIWVVV 195 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~~ 195 (806)
..+||.+..++.+.+.+..+++. .+.++|+.|+||||+|+.+++...-.. +.|.-.+.+..
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieida 95 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDA 95 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecc
Confidence 46899999999999999877654 467999999999999999988762100 00111122222
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-
Q 037138 196 SKDMQLERIQEKIGERIGLLENRSLEERASGIFK-ILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL- 270 (806)
Q Consensus 196 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~- 270 (806)
+....+.++ +++.+ .+.. -..+++-++|+|++... ...+.+...+.. ....++|.+|.+
T Consensus 96 as~~~Vddi-R~li~---------------~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~ 159 (647)
T PRK07994 96 ASRTKVEDT-RELLD---------------NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (647)
T ss_pred cccCCHHHH-HHHHH---------------HHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCc
Confidence 111111111 11211 1111 12467779999999753 334444444444 345555555544
Q ss_pred ------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHH
Q 037138 271 ------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLAL 319 (806)
Q Consensus 271 ------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 319 (806)
.|++++++.++....+.+.+...... .-.+....|++.++|.+--+
T Consensus 160 ~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~---~e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 160 QKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIP---FEPRALQLLARAADGSMRDA 217 (647)
T ss_pred cccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 88999999999999988776332211 11456678999999987543
No 89
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.1e-05 Score=88.17 Aligned_cols=165 Identities=18% Similarity=0.186 Sum_probs=105.7
Q ss_pred CccccchHHHHHHHHHhcCCCce-EEEEEccCCCCHHHHHHHHHhhcC----CC--------------CCCCCeEEEEEe
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVG-IIGLYGMGGVGKTTLLAQINNKFL----DT--------------PNDFDVVIWVVV 195 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~----~~--------------~~~F~~~~wv~~ 195 (806)
.++||.+..++.+.+.+..+++. .+-++|+.|+||||+|+.++...- .. ...+.-++.++.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 46899999999998888777665 789999999999999999987430 00 011223445554
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC--
Q 037138 196 SKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL-- 270 (806)
Q Consensus 196 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~-- 270 (806)
+...++.++- .+++.... .-..+++-++|+|++... ...+.+...+.. ...+.+|++|..
T Consensus 93 as~~~vddIR-~Iie~~~~--------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~ 157 (491)
T PRK14964 93 ASNTSVDDIK-VILENSCY--------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVK 157 (491)
T ss_pred ccCCCHHHHH-HHHHHHHh--------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChH
Confidence 4443433322 22221110 002356678999999643 234445445544 556777766644
Q ss_pred -----------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchH
Q 037138 271 -----------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPL 317 (806)
Q Consensus 271 -----------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 317 (806)
.+.+.+++.++....+.+.+......- -.+....|++.++|.+-
T Consensus 158 Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i---~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 158 KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH---DEESLKLIAENSSGSMR 212 (491)
T ss_pred HHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHH
Confidence 788999999999998888775443211 14567788999988764
No 90
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=1.4e-05 Score=89.81 Aligned_cols=165 Identities=15% Similarity=0.196 Sum_probs=102.1
Q ss_pred CccccchHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHhhcCCCCC-------------------CCCeEEEEE
Q 037138 135 PTIVGLNSTLEKVWRCLGEERV-GIIGLYGMGGVGKTTLLAQINNKFLDTPN-------------------DFDVVIWVV 194 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------~F~~~~wv~ 194 (806)
.+++|.+..++.|..++..+++ ..+.++|+.|+||||+|+.+.+... -.. .|.-++.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-C~~~~~~~pCg~C~sCr~i~~g~~~DvlEid 94 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-CENAQHGEPCGVCQSCTQIDAGRYVDLLEID 94 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccCCCCCCCCcccHHHHHHhccCccceEEEe
Confidence 4689999999999999987664 4679999999999999999988641 110 111122333
Q ss_pred eCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc--CcccccccCCC-CCCcEEEEecCC-
Q 037138 195 VSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERI--DLTKVGIPFPS-KNTSKVVFTTRL- 270 (806)
Q Consensus 195 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~--~~~~~~~~~~~-~~~s~iivTtr~- 270 (806)
.+....+.. .++++.... . .-..+++-++|+|++.... ....+...+.. ...+++|++|.+
T Consensus 95 aAs~~gVd~-IRelle~a~-------------~-~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~ 159 (709)
T PRK08691 95 AASNTGIDN-IREVLENAQ-------------Y-APTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159 (709)
T ss_pred ccccCCHHH-HHHHHHHHH-------------h-hhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 222222221 111211110 0 0123566799999997532 23333333433 345667766654
Q ss_pred ------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHH
Q 037138 271 ------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLA 318 (806)
Q Consensus 271 ------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 318 (806)
.+.+.+++.++....+.+.+....... -.+....|++.++|.+--
T Consensus 160 ~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i---d~eAL~~Ia~~A~GslRd 216 (709)
T PRK08691 160 HKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY---EPPALQLLGRAAAGSMRD 216 (709)
T ss_pred cccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHhCCCHHH
Confidence 678889999999988888775433211 145678899999888743
No 91
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=2.8e-06 Score=90.37 Aligned_cols=176 Identities=13% Similarity=0.103 Sum_probs=104.8
Q ss_pred CccccchHHHHHHHHHhcCCCce-EEEEEccCCCCHHHHHHHHHhhcCCCC-CCCC------eEEEEEeCCcccHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVG-IIGLYGMGGVGKTTLLAQINNKFLDTP-NDFD------VVIWVVVSKDMQLERIQE 206 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~F~------~~~wv~~s~~~~~~~~~~ 206 (806)
..++|.+..++.+.+.+..+++. .+-++|+.|+||+|+|..+.....-.. ...+ ...-+| .. ....+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~--~~---c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID--PD---HPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC--CC---ChHHH
Confidence 46899999999999999887655 588999999999999999888652100 0000 000000 00 00111
Q ss_pred HHHHHhCCC----------------CCCCHHHHHHHHHHHh-----CCCcEEEEEecCCCc--cCcccccccCCC-CCCc
Q 037138 207 KIGERIGLL----------------ENRSLEERASGIFKIL-----SKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTS 262 (806)
Q Consensus 207 ~i~~~l~~~----------------~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s 262 (806)
.|...-... ..-..++ ++.+.+.+ .+.+.++|+||++.. .....+...+.. ..++
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 111000000 0011222 33344443 356779999999753 233444444444 4566
Q ss_pred EEEEecCC-------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhh
Q 037138 263 KVVFTTRL-------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITTG 323 (806)
Q Consensus 263 ~iivTtr~-------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g 323 (806)
.+|++|.+ .+.+.+++.++..+++........ .+....+++.++|.|..+..+.
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHHh
Confidence 66666655 789999999999999987642211 2223678999999998665544
No 92
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=1.7e-05 Score=85.05 Aligned_cols=164 Identities=10% Similarity=0.069 Sum_probs=100.5
Q ss_pred CccccchHHHHHHHHHhcCCC----------ceEEEEEccCCCCHHHHHHHHHhhcCCC------------------CCC
Q 037138 135 PTIVGLNSTLEKVWRCLGEER----------VGIIGLYGMGGVGKTTLLAQINNKFLDT------------------PND 186 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~----------~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------------~~~ 186 (806)
..++|.+..++.+.+.+..+. ...+-++|++|+||||+|+.++....-. ..|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 458999999999999987653 4568899999999999999998754110 012
Q ss_pred CCeEEEEEe-CCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCcccccccCCC-CCCc
Q 037138 187 FDVVIWVVV-SKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTS 262 (806)
Q Consensus 187 F~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s 262 (806)
.| +.++.. +....+.++ +++.+.+.. .-..+++-++|+|+++.. .....+...+.. ..++
T Consensus 85 pD-~~~i~~~~~~i~i~~i-R~l~~~~~~--------------~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~ 148 (394)
T PRK07940 85 PD-VRVVAPEGLSIGVDEV-RELVTIAAR--------------RPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRT 148 (394)
T ss_pred CC-EEEeccccccCCHHHH-HHHHHHHHh--------------CcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCC
Confidence 22 112211 111112111 111111100 011355668888999754 223334444434 4566
Q ss_pred EEEEecCC-------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHh
Q 037138 263 KVVFTTRL-------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITT 322 (806)
Q Consensus 263 ~iivTtr~-------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 322 (806)
.+|++|.+ .+.+.+++.++..+.+.+..+. . .+.+..+++.++|.|.....+
T Consensus 149 ~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 149 VWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-----D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred eEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 67766655 7899999999999888754321 1 455788999999999755444
No 93
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.27 E-value=2.3e-05 Score=76.07 Aligned_cols=146 Identities=15% Similarity=0.230 Sum_probs=89.7
Q ss_pred HHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHhhcCCCC--------------------CCCCeEEEEEe-CCcccHHH
Q 037138 146 KVWRCLGEERV-GIIGLYGMGGVGKTTLLAQINNKFLDTP--------------------NDFDVVIWVVV-SKDMQLER 203 (806)
Q Consensus 146 ~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------------------~~F~~~~wv~~-s~~~~~~~ 203 (806)
.+.+.+..+++ ..+.++|+.|+||||+|+.+..... .. .+.|. .++.. .....++.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~-~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~ 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALL-CEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQ 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHH
Confidence 45556656655 6789999999999999999988762 11 12222 22221 11122221
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC----------
Q 037138 204 IQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL---------- 270 (806)
Q Consensus 204 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~---------- 270 (806)
+ +++.+.+.. .-..+.+-++|+||+... ...+.+...+.. ...+.+|++|++
T Consensus 81 i-~~i~~~~~~--------------~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s 145 (188)
T TIGR00678 81 V-RELVEFLSR--------------TPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS 145 (188)
T ss_pred H-HHHHHHHcc--------------CcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh
Confidence 1 112221110 001356678999998653 234445444544 456667766655
Q ss_pred ---ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchH
Q 037138 271 ---IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPL 317 (806)
Q Consensus 271 ---~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 317 (806)
.+.+.+++.++..+.+.+. + .. .+.+..|++.++|.|.
T Consensus 146 r~~~~~~~~~~~~~~~~~l~~~-g---i~-----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 146 RCQVLPFPPLSEEALLQWLIRQ-G---IS-----EEAAELLLALAGGSPG 186 (188)
T ss_pred hcEEeeCCCCCHHHHHHHHHHc-C---CC-----HHHHHHHHHHcCCCcc
Confidence 7899999999998888776 1 11 4668899999999885
No 94
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.4e-05 Score=88.82 Aligned_cols=165 Identities=15% Similarity=0.147 Sum_probs=102.6
Q ss_pred CccccchHHHHHHHHHhcCCCce-EEEEEccCCCCHHHHHHHHHhhcCCCC-------------------CCCCeEEEEE
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVG-IIGLYGMGGVGKTTLLAQINNKFLDTP-------------------NDFDVVIWVV 194 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~~F~~~~wv~ 194 (806)
.++||-+..++.+.+++..+.+. .+-++|+.|+||||+|+.+++... -. +.|.-++.++
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~-c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN-CEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc-CCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 45899999999999999877655 468999999999999999988651 11 1122234444
Q ss_pred eCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-
Q 037138 195 VSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL- 270 (806)
Q Consensus 195 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~- 270 (806)
.+....+.++ +++++.+.. .-..++.-++|+|+|... ...+.+...+.. ...+++|++|.+
T Consensus 95 aas~~~v~~i-R~l~~~~~~--------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~ 159 (509)
T PRK14958 95 AASRTKVEDT-RELLDNIPY--------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDH 159 (509)
T ss_pred ccccCCHHHH-HHHHHHHhh--------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECCh
Confidence 3333333332 222222211 012356678999999753 334444444444 456666665544
Q ss_pred ------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHH
Q 037138 271 ------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLA 318 (806)
Q Consensus 271 ------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 318 (806)
.+++++++.++....+.+.+....... -.+....|++.++|.+--
T Consensus 160 ~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~---~~~al~~ia~~s~GslR~ 216 (509)
T PRK14958 160 HKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF---ENAALDLLARAANGSVRD 216 (509)
T ss_pred HhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHH
Confidence 678888998888777766654332111 134567788888887643
No 95
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1e-05 Score=88.02 Aligned_cols=179 Identities=14% Similarity=0.110 Sum_probs=102.2
Q ss_pred CccccchHHHHHHHHHhcCCCce-EEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEE-eCCcccHHHHHHHHHHHh
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVG-IIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVV-VSKDMQLERIQEKIGERI 212 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i~~~l 212 (806)
..++|.+..++.+.+++..+.++ .+.++|+.|+||||+|+.+++... -....+...|.. +....+.....+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-CCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 46899999999999999877665 488999999999999999988762 111110000000 000000000111111000
Q ss_pred CC-------CCCCCHHHHHHHHHHHh-----CCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-------
Q 037138 213 GL-------LENRSLEERASGIFKIL-----SKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL------- 270 (806)
Q Consensus 213 ~~-------~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~------- 270 (806)
.. ......++.. .+.+.+ .+++-++|+|++... ..++.+...+.. ...+.+|++|..
T Consensus 95 ~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 00 0001112221 122222 345668899998754 245555555555 456666655543
Q ss_pred ------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHH
Q 037138 271 ------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLA 318 (806)
Q Consensus 271 ------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 318 (806)
.+++.++++++....+...+...... --.+.+..|++.++|.+--
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~---i~~~al~~l~~~s~g~lr~ 224 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEGIS---VDADALQLIGRKAQGSMRD 224 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHH
Confidence 68889999999988888776332211 1156788999999997743
No 96
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.25 E-value=2.3e-05 Score=84.72 Aligned_cols=168 Identities=13% Similarity=0.159 Sum_probs=102.9
Q ss_pred CccccchHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHhhcCCC-C------------------CCCCeEEEEE
Q 037138 135 PTIVGLNSTLEKVWRCLGEERV-GIIGLYGMGGVGKTTLLAQINNKFLDT-P------------------NDFDVVIWVV 194 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~-~------------------~~F~~~~wv~ 194 (806)
..++|.+..++.+.+++..+.. ..+-++|++|+||||+|+.+....... . .+++. +++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 3579999999999999977654 467899999999999999998775210 0 12332 3333
Q ss_pred eCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-
Q 037138 195 VSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL- 270 (806)
Q Consensus 195 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~- 270 (806)
.+....... .+++...+.. .-..+++-++|+|++... .....+...+.. ...+.+|++|.+
T Consensus 93 ~~~~~~~~~-~~~l~~~~~~--------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~ 157 (355)
T TIGR02397 93 AASNNGVDD-IREILDNVKY--------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEP 157 (355)
T ss_pred ccccCCHHH-HHHHHHHHhc--------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCH
Confidence 221111111 1122221110 012345668999998643 234444444444 455666667654
Q ss_pred ------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHH
Q 037138 271 ------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALIT 321 (806)
Q Consensus 271 ------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 321 (806)
.+++.++++++....+...+.......+ .+.+..+++.++|.|..+..
T Consensus 158 ~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~ 217 (355)
T TIGR02397 158 HKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALS 217 (355)
T ss_pred HHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHH
Confidence 6778889999988888876643321111 46778888999998865533
No 97
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.25 E-value=1.6e-07 Score=103.38 Aligned_cols=130 Identities=28% Similarity=0.299 Sum_probs=79.6
Q ss_pred CCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEEec
Q 037138 479 CPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYLNL 558 (806)
Q Consensus 479 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L 558 (806)
+..+..+.+..|.+..+.. .+..+++|..|++.+| .+..+...+..+++|++|++++|.|+.+. .+..++.|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~~~~-~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILN-HLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhhhhc-ccccccceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhhee
Confidence 4455555566665544222 2566677777777777 44444433666777777777777777664 4566666777777
Q ss_pred CCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHH--hcCCCCCCeeeEEecchhhHH
Q 037138 559 EHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEE--LISLKHLNVLTIALKSFFALQ 629 (806)
Q Consensus 559 ~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~--l~~L~~L~~L~l~~~~~~~~~ 629 (806)
++|. +..++. +..+++|+.+++++|.+... .. +..+.+|+.+.+..|.+..+.
T Consensus 148 ~~N~-i~~~~~--~~~l~~L~~l~l~~n~i~~i---------------e~~~~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 148 SGNL-ISDISG--LESLKSLKLLDLSYNRIVDI---------------ENDELSELISLEELDLGGNSIREIE 202 (414)
T ss_pred ccCc-chhccC--CccchhhhcccCCcchhhhh---------------hhhhhhhccchHHHhccCCchhccc
Confidence 7776 455554 55577777777777766532 12 355666666666666654443
No 98
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.24 E-value=2.6e-06 Score=82.59 Aligned_cols=44 Identities=27% Similarity=0.400 Sum_probs=32.5
Q ss_pred cccchHHHHHHHHHh---cCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 137 IVGLNSTLEKVWRCL---GEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 137 ~~gr~~~~~~l~~~l---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
|+||+++++++...+ .....+.+.|+|.+|+|||+|+++++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 799999999999998 33567999999999999999999999987
No 99
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2.2e-05 Score=88.53 Aligned_cols=167 Identities=16% Similarity=0.186 Sum_probs=101.8
Q ss_pred CccccchHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHhhcCCCC-----------------------CCCCeE
Q 037138 135 PTIVGLNSTLEKVWRCLGEERV-GIIGLYGMGGVGKTTLLAQINNKFLDTP-----------------------NDFDVV 190 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-----------------------~~F~~~ 190 (806)
.++||-+..++.|.+++..+++ ..+-++|+.|+||||+|+.+.+...-.. +.+.-+
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~ 95 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDY 95 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCce
Confidence 4589999999999999987765 5668999999999999999977651000 001112
Q ss_pred EEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEe
Q 037138 191 IWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFT 267 (806)
Q Consensus 191 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivT 267 (806)
++++.+....+.++ +++++.... .-..++.-++|||+|+.. ...+.+...+.. .....+|++
T Consensus 96 ~eldaas~~~Vd~i-Reli~~~~~--------------~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~ 160 (618)
T PRK14951 96 TELDAASNRGVDEV-QQLLEQAVY--------------KPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLA 160 (618)
T ss_pred eecCcccccCHHHH-HHHHHHHHh--------------CcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEE
Confidence 22222222122111 111111100 001345568999999853 344555555544 445566655
Q ss_pred cCC-------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHH
Q 037138 268 TRL-------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLAL 319 (806)
Q Consensus 268 tr~-------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 319 (806)
|.+ .+++++++.++....+.+.+....... -.+....|++.++|.+--+
T Consensus 161 Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i---e~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 161 TTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA---EPQALRLLARAARGSMRDA 222 (618)
T ss_pred ECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 433 789999999999999888765433221 1456788899999876433
No 100
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=1.7e-05 Score=88.26 Aligned_cols=168 Identities=14% Similarity=0.166 Sum_probs=99.1
Q ss_pred CccccchHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHhhcCCCCC--------------------CCCeEEEE
Q 037138 135 PTIVGLNSTLEKVWRCLGEERV-GIIGLYGMGGVGKTTLLAQINNKFLDTPN--------------------DFDVVIWV 193 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--------------------~F~~~~wv 193 (806)
..++|++..++.+.+++..+.+ +.+.++|+.|+||||+|+.+++... -.. +.| .+++
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~-C~~~~~~~~Cg~C~sCr~i~~~~h~D-iieI 93 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN-CLNPKDGDCCNSCSVCESINTNQSVD-IVEL 93 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CCCCCCCCCCcccHHHHHHHcCCCCc-eEEe
Confidence 4689999999999999877654 4688999999999999999988752 111 111 2222
Q ss_pred EeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC
Q 037138 194 VVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL 270 (806)
Q Consensus 194 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~ 270 (806)
..+....+.++ +.+...+.. .. ..+++-++|+|++... ..+..+...+.. ...+.+|++|..
T Consensus 94 daas~igVd~I-ReIi~~~~~-------------~P-~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~ 158 (605)
T PRK05896 94 DAASNNGVDEI-RNIIDNINY-------------LP-TTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTE 158 (605)
T ss_pred ccccccCHHHH-HHHHHHHHh-------------ch-hhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCC
Confidence 22111121111 111111100 00 1234457999999753 334444444433 345555555533
Q ss_pred -------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch-HHHHHh
Q 037138 271 -------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP-LALITT 322 (806)
Q Consensus 271 -------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~~ 322 (806)
.+.+.+++.++....+...+......-. .+.+..+++.++|.+ .|+..+
T Consensus 159 ~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 159 FQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred hHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 7888999999988888876643321111 456778888888865 344333
No 101
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.24 E-value=7.2e-06 Score=81.12 Aligned_cols=143 Identities=17% Similarity=0.219 Sum_probs=84.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKK 235 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 235 (806)
...+.|+|..|+|||.|.+++++...+... =..+++++ ..++...+...+.. ... ..+.+.++ .-
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~-~~~v~y~~------~~~f~~~~~~~~~~---~~~----~~~~~~~~-~~ 98 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHP-GKRVVYLS------AEEFIREFADALRD---GEI----EEFKDRLR-SA 98 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCT-TS-EEEEE------HHHHHHHHHHHHHT---TSH----HHHHHHHC-TS
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccc-cccceeec------HHHHHHHHHHHHHc---ccc----hhhhhhhh-cC
Confidence 456899999999999999999998621111 12466664 34555555554432 112 23444444 34
Q ss_pred EEEEEecCCCccC---cc-cccccCCC--CCCcEEEEecCC--------------------ceecccCChHHHHHHHHhh
Q 037138 236 FLLLLDDVWERID---LT-KVGIPFPS--KNTSKVVFTTRL--------------------IFKVECLRDKEAWELFLDK 289 (806)
Q Consensus 236 ~LlvlDdv~~~~~---~~-~~~~~~~~--~~~s~iivTtr~--------------------~~~l~~L~~~e~~~lf~~~ 289 (806)
=+|++||++.... |+ .+...+.. ..|.+||+|++. .+++++++.++-..++.+.
T Consensus 99 DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~ 178 (219)
T PF00308_consen 99 DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKK 178 (219)
T ss_dssp SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHH
T ss_pred CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHH
Confidence 4788999975322 22 23333333 567899999976 7788888888888888887
Q ss_pred hCCCccCCCCChHHHHHHHHHHhCCch
Q 037138 290 VGEETLDSHLDIPKLAHTLAKECGGLP 316 (806)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~c~GlP 316 (806)
+......- -++++.-|++.+.+..
T Consensus 179 a~~~~~~l---~~~v~~~l~~~~~~~~ 202 (219)
T PF00308_consen 179 AKERGIEL---PEEVIEYLARRFRRDV 202 (219)
T ss_dssp HHHTT--S----HHHHHHHHHHTTSSH
T ss_pred HHHhCCCC---cHHHHHHHHHhhcCCH
Confidence 75433221 1566667777665433
No 102
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.19 E-value=6.4e-05 Score=78.70 Aligned_cols=158 Identities=18% Similarity=0.258 Sum_probs=106.8
Q ss_pred CCccccchHHHHHHHHHhcC----CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHH
Q 037138 134 EPTIVGLNSTLEKVWRCLGE----ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIG 209 (806)
Q Consensus 134 ~~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 209 (806)
+..++||+.+++.+..++.. ...+-+-|.|-+|.|||.+...++.+...-... -.++++++..-....+++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHH
Confidence 35689999999999998854 467889999999999999999999987211111 2557777765556777888887
Q ss_pred HHhC--CCCCCCHHHHHHHHHHHhCCC--cEEEEEecCCCcc--CcccccccC--CCCCCcEEEEec---------CC--
Q 037138 210 ERIG--LLENRSLEERASGIFKILSKK--KFLLLLDDVWERI--DLTKVGIPF--PSKNTSKVVFTT---------RL-- 270 (806)
Q Consensus 210 ~~l~--~~~~~~~~~~~~~l~~~l~~k--~~LlvlDdv~~~~--~~~~~~~~~--~~~~~s~iivTt---------r~-- 270 (806)
..+. ........+....+.....+. .+++|+|+++.-. .-..+...+ +.-+++++|+-- |.
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 7762 222233355555666665443 5899999997532 122222222 335566655422 22
Q ss_pred -----------ceecccCChHHHHHHHHhhhCC
Q 037138 271 -----------IFKVECLRDKEAWELFLDKVGE 292 (806)
Q Consensus 271 -----------~~~l~~L~~~e~~~lf~~~~~~ 292 (806)
.+..+|.+.++-.++|..+...
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~ 340 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE 340 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhc
Confidence 6778999999999999988743
No 103
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.19 E-value=1.2e-06 Score=90.44 Aligned_cols=279 Identities=19% Similarity=0.199 Sum_probs=170.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCC-CeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDF-DVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSK 233 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~ 233 (806)
..+.+.++|.|||||||++-++.. . ...| +.+.++...+-.+...+.-.+...++... .+-+.....+.....+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-~~g~~~~~~~~~~~~~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-QPGDSAVDTLVRRIGD 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhccccc-ccchHHHHHHHHHHhh
Confidence 467899999999999999999998 4 2344 56777777777777777777777676653 2223334456667788
Q ss_pred CcEEEEEecCCCccCcc-cccccCCC-CCCcEEEEecCC--------ceecccCChH-HHHHHHHhhhCCC--ccCCCCC
Q 037138 234 KKFLLLLDDVWERIDLT-KVGIPFPS-KNTSKVVFTTRL--------IFKVECLRDK-EAWELFLDKVGEE--TLDSHLD 300 (806)
Q Consensus 234 k~~LlvlDdv~~~~~~~-~~~~~~~~-~~~s~iivTtr~--------~~~l~~L~~~-e~~~lf~~~~~~~--~~~~~~~ 300 (806)
+|.++|+||..+..+-- ...-.+-. ...-.|+.|+|. .+.+++|+.. ++.++|...+... ...-...
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~ 167 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDD 167 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceeecCC
Confidence 99999999986532211 11111112 344578888888 6778888865 7889987765321 1112233
Q ss_pred hHHHHHHHHHHhCCchHHHHHhh-hcCCCCHHHH----HHHHHHHhhcccCCCCCccchhhhhhhchhcCChhhHHHHHh
Q 037138 301 IPKLAHTLAKECGGLPLALITTG-LGCKKSQEEW----SYAIEILRRSASELPGMGKEVYPLLKFSYDSLSSEIFRSCLL 375 (806)
Q Consensus 301 ~~~~~~~i~~~c~GlPlai~~~g-~~~~~~~~~w----~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl 375 (806)
-...+.+|.+...|.|++|...+ ........+- .+-...+........--.....+.+.+||.-|.. -.+--|-
T Consensus 168 ~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg-we~~~~~ 246 (414)
T COG3903 168 NAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG-WERALFG 246 (414)
T ss_pred chHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh-HHHHHhc
Confidence 46778999999999999998888 2222222222 2222222221111111123678889999999988 5688888
Q ss_pred hhcCCCCCCcccHHHHHHHHHHcCCccCCCchhHHHhHHHHHHHHHHcccceee---CCCcEEehHHHHHHHHHH
Q 037138 376 YCSLFPEDCKIDKIELIECWIGEGFLNGYEGAEVHNQGYYIIGILVHACLLEEV---GSDHVRMHDAIRDMTLWI 447 (806)
Q Consensus 376 ~~~~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~---~~~~~~mHdlv~d~a~~~ 447 (806)
-++.|...|... ...|.+-|-.... ..-.....+..+++.++.... ....++.-+-.+.++...
T Consensus 247 rLa~~~g~f~~~----l~~~~a~g~~~~~----~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yalae 313 (414)
T COG3903 247 RLAVFVGGFDLG----LALAVAAGADVDV----PRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAE 313 (414)
T ss_pred chhhhhhhhccc----HHHHHhcCCcccc----chHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 888888776554 2334443322111 112223335567777776543 233444445555555443
No 104
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.18 E-value=8.3e-08 Score=97.99 Aligned_cols=271 Identities=18% Similarity=0.206 Sum_probs=145.6
Q ss_pred Cccccccccccchhc--chhHhhccCCcccEEEccCCCcccc--cCcccCCCCCCCEEEecCC-Ccc--ccChhhhcCCC
Q 037138 480 PHLLSLFPNINRLKT--IARRFFDFMPSLTVLNLSNNGFLTK--LRPGISKLVSLQYLNLSKT-SIR--ELPKELKALVN 552 (806)
Q Consensus 480 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~~~~~~~--lp~~i~~l~~L~~L~Ls~n-~l~--~lp~~i~~L~~ 552 (806)
..|+.|.+.++.-.. -...+...++++..|++.+|..++. +-..-..+.+|++|++..| .++ .+-.-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 457788888773211 1234456788888888888854332 1111235788899998886 566 23233457888
Q ss_pred CcEEecCCCccccc--cccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecc-hhhHH
Q 037138 553 LKYLNLEHSRYLHT--IPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKS-FFALQ 629 (806)
Q Consensus 553 L~~L~L~~~~~l~~--lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~-~~~~~ 629 (806)
|.+|+++.|..+.. +- ....++.+|+.+.+.||.-.+. ..+...-+....+..+++..+. ++..
T Consensus 218 L~~lNlSwc~qi~~~gv~-~~~rG~~~l~~~~~kGC~e~~l-----------e~l~~~~~~~~~i~~lnl~~c~~lTD~- 284 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQ-ALQRGCKELEKLSLKGCLELEL-----------EALLKAAAYCLEILKLNLQHCNQLTDE- 284 (483)
T ss_pred HHHhhhccCchhhcCcch-HHhccchhhhhhhhcccccccH-----------HHHHHHhccChHhhccchhhhccccch-
Confidence 99999998864433 11 1245566677776666533221 1111111122222233322211 1111
Q ss_pred Hhhhchhhccccccceec--cCCCCCccccccc-ccccccceEeeccccCccc------------cceeeecccCCcCCC
Q 037138 630 RFLSSHELQNCTKSLNLR--YYDDSKSFNIYSL-ADLKHLDKLDLIYCRNLEE------------FKKVMIDFCIKLREV 694 (806)
Q Consensus 630 ~~~~~~~l~~~~~~l~L~--~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~------------L~~L~l~~c~~l~~~ 694 (806)
.+..... .+.++..+. .+.+........+ .+..+|+.|.++.|...+. |+.+.+..|....+.
T Consensus 285 ~~~~i~~--~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 285 DLWLIAC--GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG 362 (483)
T ss_pred HHHHHhh--hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence 1111111 232333333 3333222222233 3568999999999875443 777777777655443
Q ss_pred C---ccccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceecccccccccccccCCCCCchHHHHHccCC
Q 037138 695 T---WLVFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKSIYWNALPSHIWKKLIMGCA 771 (806)
Q Consensus 695 ~---~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~ll~~c~ 771 (806)
. .-.+++.|+.|.|++|..+++-.. ..+. ..-.+...|+.|.|++||.+++ ..|+. +..|+
T Consensus 363 tL~sls~~C~~lr~lslshce~itD~gi----~~l~---~~~c~~~~l~~lEL~n~p~i~d--------~~Le~-l~~c~ 426 (483)
T KOG4341|consen 363 TLASLSRNCPRLRVLSLSHCELITDEGI----RHLS---SSSCSLEGLEVLELDNCPLITD--------ATLEH-LSICR 426 (483)
T ss_pred hHhhhccCCchhccCChhhhhhhhhhhh----hhhh---hccccccccceeeecCCCCchH--------HHHHH-HhhCc
Confidence 2 223678899999998887554310 0001 0112345788888888876654 23333 46788
Q ss_pred CCCCCCCCCC
Q 037138 772 GLKKLPLDSN 781 (806)
Q Consensus 772 ~L~~L~l~~n 781 (806)
+|+.+++-..
T Consensus 427 ~Leri~l~~~ 436 (483)
T KOG4341|consen 427 NLERIELIDC 436 (483)
T ss_pred ccceeeeech
Confidence 8888766543
No 105
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=3.9e-05 Score=86.06 Aligned_cols=165 Identities=15% Similarity=0.160 Sum_probs=100.8
Q ss_pred CccccchHHHHHHHHHhcCCCce-EEEEEccCCCCHHHHHHHHHhhcCCCC------------------CCCCeEEEEEe
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVG-IIGLYGMGGVGKTTLLAQINNKFLDTP------------------NDFDVVIWVVV 195 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~~F~~~~wv~~ 195 (806)
..++|.+..++.+..++..+++. .+.++|+.|+||||+|+.+.....-.. +.|.-.+++..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 46899999999999999876655 568999999999999999988751000 01222233332
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc--CcccccccCCC-CCCcEEEEecCC--
Q 037138 196 SKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERI--DLTKVGIPFPS-KNTSKVVFTTRL-- 270 (806)
Q Consensus 196 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~--~~~~~~~~~~~-~~~s~iivTtr~-- 270 (806)
+....+.++ ++++..... .-..+++-++|+|++.... ..+.+...+.. ...+.+|++|.+
T Consensus 96 ~~~~~vd~i-r~l~~~~~~--------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~ 160 (527)
T PRK14969 96 ASNTQVDAM-RELLDNAQY--------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQ 160 (527)
T ss_pred cccCCHHHH-HHHHHHHhh--------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChh
Confidence 222222221 122221110 0123567799999997542 24444444444 445666655543
Q ss_pred -----------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchH
Q 037138 271 -----------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPL 317 (806)
Q Consensus 271 -----------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 317 (806)
.+++++++.++....+.+.+...... --.+....|++.++|.+-
T Consensus 161 kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~---~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 161 KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP---FDATALQLLARAAAGSMR 215 (527)
T ss_pred hCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHH
Confidence 77889999999888887766433211 114556888888998764
No 106
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.16 E-value=1.6e-05 Score=79.77 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=29.9
Q ss_pred ccchHHH-HHHHHHhc-CCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 138 VGLNSTL-EKVWRCLG-EERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 138 ~gr~~~~-~~l~~~l~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.|..... ..+.++.. ......+.|+|..|+|||+||+.+++..
T Consensus 22 ~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 22 AGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred cCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3554443 33333333 1345678899999999999999999975
No 107
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=4e-05 Score=81.16 Aligned_cols=180 Identities=12% Similarity=0.106 Sum_probs=105.8
Q ss_pred CccccchHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHhhcCCCC-CCCCeEEEEEeCCcccHHHHHHHHHHH-
Q 037138 135 PTIVGLNSTLEKVWRCLGEERV-GIIGLYGMGGVGKTTLLAQINNKFLDTP-NDFDVVIWVVVSKDMQLERIQEKIGER- 211 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~s~~~~~~~~~~~i~~~- 211 (806)
..++|.++..+.+...+..+.. ..+.|+|+.|+||||+|..+.+...... ..+.... ...........+.+...
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHHHHHcCC
Confidence 4589999999999999987764 4688999999999999999998762100 0011110 00011111122222211
Q ss_pred ------hCCC---------CCCCHHHHHHHHHHHh-----CCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEec
Q 037138 212 ------IGLL---------ENRSLEERASGIFKIL-----SKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTT 268 (806)
Q Consensus 212 ------l~~~---------~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTt 268 (806)
+..+ ..-..++ ...+.+++ .+++-++|+|++... ...+.+...+.. ..+..+|++|
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 0000 0111222 23344443 356779999999754 223334333333 3344444444
Q ss_pred CC-------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhh
Q 037138 269 RL-------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITTG 323 (806)
Q Consensus 269 r~-------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g 323 (806)
.. .+++.+++.++..+++.+...... --.+....|++.++|.|..+..+.
T Consensus 179 ~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 179 HSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33 899999999999999987432111 114557889999999998665444
No 108
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=3.7e-05 Score=86.90 Aligned_cols=165 Identities=15% Similarity=0.147 Sum_probs=102.0
Q ss_pred CccccchHHHHHHHHHhcCCCce-EEEEEccCCCCHHHHHHHHHhhcCCCCCCCC------------------------e
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVG-IIGLYGMGGVGKTTLLAQINNKFLDTPNDFD------------------------V 189 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~------------------------~ 189 (806)
.+++|.+..++.+.+.+..++.. .+-++|+.|+||||+|+.+++... -..... -
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~-c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~D 102 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN-YEGPDGDGGPTIDLCGVGEHCQAIMEGRHVD 102 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC-cCCccccCCCccccCcccHHHHHHhcCCCCc
Confidence 46899999999999999877644 688999999999999999988752 111000 0
Q ss_pred EEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HhCCCcEEEEEecCCCcc--CcccccccCCC-CCCcEEE
Q 037138 190 VIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFK-ILSKKKFLLLLDDVWERI--DLTKVGIPFPS-KNTSKVV 265 (806)
Q Consensus 190 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlvlDdv~~~~--~~~~~~~~~~~-~~~s~ii 265 (806)
++++.......+.++ ++|++ .++. -..+++-++|+|++.... ..+.+...+.. ...+.+|
T Consensus 103 v~e~~a~s~~gvd~I-ReIie---------------~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fI 166 (598)
T PRK09111 103 VLEMDAASHTGVDDI-REIIE---------------SVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFI 166 (598)
T ss_pred eEEecccccCCHHHH-HHHHH---------------HHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEE
Confidence 122221111111111 11111 1110 123456689999996542 34445444444 4566666
Q ss_pred EecCC-------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHH
Q 037138 266 FTTRL-------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLAL 319 (806)
Q Consensus 266 vTtr~-------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 319 (806)
++|.. .+.+..++.++....+.+.+......- -.+....|++.++|.+.-+
T Consensus 167 l~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i---~~eAl~lIa~~a~Gdlr~a 230 (598)
T PRK09111 167 FATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV---EDEALALIARAAEGSVRDG 230 (598)
T ss_pred EEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 55533 788999999999999888764332111 1466788899999987544
No 109
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=4.4e-05 Score=85.41 Aligned_cols=170 Identities=16% Similarity=0.192 Sum_probs=103.8
Q ss_pred CccccchHHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCC-------------------CeEEEEE
Q 037138 135 PTIVGLNSTLEKVWRCLGEER-VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDF-------------------DVVIWVV 194 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F-------------------~~~~wv~ 194 (806)
.+++|.+..++.|.+.+..++ ...+.++|+.|+||||+|+.+++... -.... .-++++.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~-C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId 94 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN-CETAPTGEPCNTCEQCRKVTQGMHVDVVEID 94 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc-ccCCCCCCCCcccHHHHHHhcCCCCceEEEe
Confidence 357999999999998887765 46777899999999999999998762 11100 0122332
Q ss_pred eCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-
Q 037138 195 VSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL- 270 (806)
Q Consensus 195 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~- 270 (806)
.+....+.++ +.+.+.+. ..-..+++-++|+|++... ...+.+...+.. .....+|++|..
T Consensus 95 ~a~~~~Id~i-R~L~~~~~--------------~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~ 159 (624)
T PRK14959 95 GASNRGIDDA-KRLKEAIG--------------YAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEP 159 (624)
T ss_pred cccccCHHHH-HHHHHHHH--------------hhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCCh
Confidence 2211122111 11111110 0012456779999999754 334445444443 344555555543
Q ss_pred ------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch-HHHHHhh
Q 037138 271 ------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP-LALITTG 323 (806)
Q Consensus 271 ------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~~g 323 (806)
.+++++++.++....+...+....... -.+.+..|++.++|.+ .|+..+.
T Consensus 160 ~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i---d~eal~lIA~~s~GdlR~Al~lLe 222 (624)
T PRK14959 160 HKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY---DPAAVRLIARRAAGSVRDSMSLLG 222 (624)
T ss_pred hhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 688999999999988887664332111 1567788999999854 5666654
No 110
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.13 E-value=6.2e-06 Score=86.45 Aligned_cols=90 Identities=18% Similarity=0.200 Sum_probs=63.1
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCc--ccHHHHHHHHHHHhCCCC-CCCHHH---HHH--
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKD--MQLERIQEKIGERIGLLE-NRSLEE---RAS-- 225 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~-~~~~~~---~~~-- 225 (806)
..-..++|+|++|+|||||++.+++.. . ..+|+..+||.+.+. .++.++++.+...+-... ...... .+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 345679999999999999999999987 3 348999999999866 789999999954332211 111111 111
Q ss_pred --HHHH-HhCCCcEEEEEecCCC
Q 037138 226 --GIFK-ILSKKKFLLLLDDVWE 245 (806)
Q Consensus 226 --~l~~-~l~~k~~LlvlDdv~~ 245 (806)
.... .-+|++++|++|++..
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhH
Confidence 1111 1368999999999953
No 111
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.13 E-value=2.7e-05 Score=83.95 Aligned_cols=158 Identities=21% Similarity=0.260 Sum_probs=93.8
Q ss_pred CccccchHHHHHHHHHhcC-------------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccH
Q 037138 135 PTIVGLNSTLEKVWRCLGE-------------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQL 201 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 201 (806)
.++.|++..++++.+.+.- ...+-+.++|++|+|||++|+.+++.. ...| +.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~---- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----
Confidence 4578999999999887631 134568999999999999999999987 2333 22211
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHH-hCCCcEEEEEecCCCcc----------C------cccccccCC---CCCC
Q 037138 202 ERIQEKIGERIGLLENRSLEERASGIFKI-LSKKKFLLLLDDVWERI----------D------LTKVGIPFP---SKNT 261 (806)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~~-l~~k~~LlvlDdv~~~~----------~------~~~~~~~~~---~~~~ 261 (806)
..+..... + ........+.+. -...+.+|+|||++... + +..+...+. ...+
T Consensus 190 ~~l~~~~~---g-----~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 261 (364)
T TIGR01242 190 SELVRKYI---G-----EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGN 261 (364)
T ss_pred HHHHHHhh---h-----HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 11111110 0 111111222222 23467899999997531 0 111111111 1346
Q ss_pred cEEEEecCC----------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch
Q 037138 262 SKVVFTTRL----------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP 316 (806)
Q Consensus 262 s~iivTtr~----------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 316 (806)
..||.||.. .+.+...+.++..++|+.++.........+ ...+++.+.|..
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 678888864 577889999999999998775433222222 356667777764
No 112
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.12 E-value=3.5e-07 Score=100.66 Aligned_cols=110 Identities=28% Similarity=0.438 Sum_probs=90.5
Q ss_pred ccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEEecCCCccccccccccccCCCCCcE
Q 037138 501 DFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHV 580 (806)
Q Consensus 501 ~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~ 580 (806)
..+..+..+++..| .+...-..++.+.+|.+|++.+|.|..+...+..+++|++|++++|. ++.+.. +..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~--l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG--LSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc--hhhccchhh
Confidence 45667777778888 55554456888999999999999999887668999999999999998 577765 788999999
Q ss_pred EEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHH
Q 037138 581 LRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQ 629 (806)
Q Consensus 581 L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 629 (806)
|++.+|.+... ..+..+++|+.+++++|.+..+.
T Consensus 145 L~l~~N~i~~~---------------~~~~~l~~L~~l~l~~n~i~~ie 178 (414)
T KOG0531|consen 145 LNLSGNLISDI---------------SGLESLKSLKLLDLSYNRIVDIE 178 (414)
T ss_pred heeccCcchhc---------------cCCccchhhhcccCCcchhhhhh
Confidence 99999998754 35566889999999988887665
No 113
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=5.2e-05 Score=82.16 Aligned_cols=165 Identities=15% Similarity=0.204 Sum_probs=97.8
Q ss_pred CccccchHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHhhcCC-----CCCCCCeE-EEEEeCCcccHHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLGEERV-GIIGLYGMGGVGKTTLLAQINNKFLD-----TPNDFDVV-IWVVVSKDMQLERIQEK 207 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~-----~~~~F~~~-~wv~~s~~~~~~~~~~~ 207 (806)
..++|.+..++.+.+.+..+.. +.+.++|++|+||||+|+.+.+.... ....|... +-+......++.++ +.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i-~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI-RN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-HH
Confidence 3579999999999999987654 58889999999999999999887521 01122211 11111111112211 12
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc--CcccccccCCC-CCCcEEEEecCC-------------c
Q 037138 208 IGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERI--DLTKVGIPFPS-KNTSKVVFTTRL-------------I 271 (806)
Q Consensus 208 i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~--~~~~~~~~~~~-~~~s~iivTtr~-------------~ 271 (806)
+++++.. .-..+++-++++|++.... .+..+...+.. ...+.+|++|.. .
T Consensus 96 l~~~~~~--------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~ 161 (367)
T PRK14970 96 LIDQVRI--------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQI 161 (367)
T ss_pred HHHHHhh--------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhccee
Confidence 2211110 0113455689999986432 24444333333 344555555532 6
Q ss_pred eecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchH
Q 037138 272 FKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPL 317 (806)
Q Consensus 272 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 317 (806)
++++++++++....+...+......-. .+....+++.++|.+-
T Consensus 162 v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr 204 (367)
T PRK14970 162 FDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALR 204 (367)
T ss_pred EecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHH
Confidence 788899999988888876643331111 4677888888888654
No 114
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=4e-05 Score=87.31 Aligned_cols=164 Identities=13% Similarity=0.194 Sum_probs=103.9
Q ss_pred CccccchHHHHHHHHHhcCCCce-EEEEEccCCCCHHHHHHHHHhhcC--------------------CCCCCCCeEEEE
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVG-IIGLYGMGGVGKTTLLAQINNKFL--------------------DTPNDFDVVIWV 193 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~--------------------~~~~~F~~~~wv 193 (806)
..++|.+..++.+...+..+.+. .+.++|+.|+||||+|+.+..... ....+|+. ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 46899999999999999877655 578999999999999999888651 01123442 233
Q ss_pred EeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEec-C
Q 037138 194 VVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTT-R 269 (806)
Q Consensus 194 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTt-r 269 (806)
..+....+.++. .++.++... -..+++-++|+|++... ...+.+...+.. ..++.+|++| +
T Consensus 96 d~~~~~~vd~Ir-~li~~~~~~--------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~ 160 (614)
T PRK14971 96 DAASNNSVDDIR-NLIEQVRIP--------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTE 160 (614)
T ss_pred cccccCCHHHHH-HHHHHHhhC--------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 333222222222 121221100 01345668899998754 335555555555 4556665544 3
Q ss_pred C------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchH
Q 037138 270 L------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPL 317 (806)
Q Consensus 270 ~------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 317 (806)
. .+.+.+++.++....+.+.+........ .+.+..|++.++|-.-
T Consensus 161 ~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr 217 (614)
T PRK14971 161 KHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMR 217 (614)
T ss_pred chhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHH
Confidence 2 7899999999999988887644332111 4567889999998664
No 115
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.11 E-value=0.00045 Score=67.94 Aligned_cols=153 Identities=18% Similarity=0.211 Sum_probs=93.5
Q ss_pred CccccchHHHHHHHHHhc-----CCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLG-----EERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIG 209 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 209 (806)
..|+|.++.++++.-++. +.....|-++|++|.||||||.-+++.. .+ .+ -++-++...-..-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-gv--n~----k~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-GV--NL----KITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-cC--Ce----EecccccccChhhHHHHH
Confidence 358999999988876663 3567899999999999999999999987 22 21 122222111111122222
Q ss_pred HHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc---------Cccc---------------ccccCCCCCCcEEE
Q 037138 210 ERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERI---------DLTK---------------VGIPFPSKNTSKVV 265 (806)
Q Consensus 210 ~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~---------~~~~---------------~~~~~~~~~~s~ii 265 (806)
..+. ..=++++|++.... ..++ +...+ .+-+-|=
T Consensus 99 t~Le--------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldL--ppFTLIG 156 (332)
T COG2255 99 TNLE--------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDL--PPFTLIG 156 (332)
T ss_pred hcCC--------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccC--CCeeEee
Confidence 2222 22244556553210 0011 11111 1234455
Q ss_pred EecCC-------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHH
Q 037138 266 FTTRL-------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLAL 319 (806)
Q Consensus 266 vTtr~-------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 319 (806)
.|||. +.+++..+.+|-.++..+.+..-.... -++.+.+|++...|-|--+
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i---~~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEI---DEEAALEIARRSRGTPRIA 220 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCC---ChHHHHHHHHhccCCcHHH
Confidence 68887 778999999999999998874332222 2567899999999999533
No 116
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=7.1e-05 Score=84.12 Aligned_cols=168 Identities=14% Similarity=0.149 Sum_probs=102.8
Q ss_pred CccccchHHHHHHHHHhcCCCceE-EEEEccCCCCHHHHHHHHHhhcCCCC---------------------CCCCeEEE
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGI-IGLYGMGGVGKTTLLAQINNKFLDTP---------------------NDFDVVIW 192 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~---------------------~~F~~~~w 192 (806)
.+++|.+..++.|.+++..+++.. +.++|+.|+||||+|+.+++...-.. .+.+ ++.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~d-vie 91 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSID-VVE 91 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCce-EEE
Confidence 468999999999999998876654 68999999999999999998752000 0111 222
Q ss_pred EEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEec
Q 037138 193 VVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFK-ILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTT 268 (806)
Q Consensus 193 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTt 268 (806)
+..+....+.++ ++|. +.+.. -..+++-++|+|++... ...+.+...+.. .....+|++|
T Consensus 92 idaas~~gvd~i-Rel~---------------~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 92 LDAASHGGVDDT-RELR---------------DRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred eccccccCHHHH-HHHH---------------HHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 322222122211 1111 11111 11356668999998743 334445445544 4455555555
Q ss_pred CC-------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchH-HHHHh
Q 037138 269 RL-------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPL-ALITT 322 (806)
Q Consensus 269 r~-------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~ 322 (806)
.. .+.+.+++.++..+.+.+.+....... -.+....|++.++|-+- |+..+
T Consensus 156 te~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i---~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 156 TEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV---DDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred CChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 43 789999999999888877664332111 14566788899998763 44443
No 117
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.09 E-value=1.4e-05 Score=78.98 Aligned_cols=168 Identities=14% Similarity=0.167 Sum_probs=110.5
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeE-EEEEeCCcccHHHHHHHHHHHhC
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVV-IWVVVSKDMQLERIQEKIGERIG 213 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~-~wv~~s~~~~~~~~~~~i~~~l~ 213 (806)
..++|.+..+.-+.+.+.....++...+|++|.|||+-|..++... -..+.|.++ .-.|+|....+.-+-..
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~K------ 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREK------ 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhh------
Confidence 4578999999999999888888999999999999999999998886 334555533 44556655433311111
Q ss_pred CCCCCCHHHHHHHHHHHh--CCCc-EEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-------------ceec
Q 037138 214 LLENRSLEERASGIFKIL--SKKK-FLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL-------------IFKV 274 (806)
Q Consensus 214 ~~~~~~~~~~~~~l~~~l--~~k~-~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~-------------~~~l 274 (806)
.++.+.......... .-++ -.+|||+++.. +.|..++..+.. ...++.|..+.. .|..
T Consensus 109 ---ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrF 185 (346)
T KOG0989|consen 109 ---IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRF 185 (346)
T ss_pred ---hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcC
Confidence 111221111111000 1123 47999999864 567777766655 555665443332 7899
Q ss_pred ccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCc
Q 037138 275 ECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGL 315 (806)
Q Consensus 275 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 315 (806)
++|.+++...-++..+..+....+ .+..+.|++.++|-
T Consensus 186 k~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 186 KKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGD 223 (346)
T ss_pred CCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCc
Confidence 999999999988888865543322 45678899999874
No 118
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=4.4e-06 Score=58.54 Aligned_cols=40 Identities=40% Similarity=0.588 Sum_probs=26.2
Q ss_pred CCCCEEEecCCCccccChhhhcCCCCcEEecCCCccccccc
Q 037138 528 VSLQYLNLSKTSIRELPKELKALVNLKYLNLEHSRYLHTIP 568 (806)
Q Consensus 528 ~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp 568 (806)
++|++|++++|+|+.+|..+++|++|++|++++|+ +..+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 35777777777777777667777777777777776 34444
No 119
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.09 E-value=2.1e-05 Score=86.48 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=98.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKK 235 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 235 (806)
..-+.|+|..|+|||+|++++++... ....-..+++++ ..++...+...+... ......+++.++ +.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~-~~~~~~~v~yv~------~~~f~~~~~~~l~~~-----~~~~~~~~~~~~-~~ 207 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIE-SNFSDLKVSYMS------GDEFARKAVDILQKT-----HKEIEQFKNEIC-QN 207 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEE------HHHHHHHHHHHHHHh-----hhHHHHHHHHhc-cC
Confidence 35688999999999999999999651 111122445554 345666666655421 012233444444 34
Q ss_pred EEEEEecCCCcc----CcccccccCCC--CCCcEEEEecCC--------------------ceecccCChHHHHHHHHhh
Q 037138 236 FLLLLDDVWERI----DLTKVGIPFPS--KNTSKVVFTTRL--------------------IFKVECLRDKEAWELFLDK 289 (806)
Q Consensus 236 ~LlvlDdv~~~~----~~~~~~~~~~~--~~~s~iivTtr~--------------------~~~l~~L~~~e~~~lf~~~ 289 (806)
-+||+||+.... ..+.+...+.. ..|..||+|+.. ...+++++.++-.+++.++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 488899996432 12334444443 556688998764 6679999999999999988
Q ss_pred hCCCccCCCCChHHHHHHHHHHhCCchHHHHHhh
Q 037138 290 VGEETLDSHLDIPKLAHTLAKECGGLPLALITTG 323 (806)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g 323 (806)
+...... ..--+++...|++.++|.|-.+.-+.
T Consensus 288 ~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 288 IKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 7432211 11226788999999999987764443
No 120
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.08 E-value=2.4e-07 Score=94.76 Aligned_cols=269 Identities=16% Similarity=0.188 Sum_probs=160.6
Q ss_pred CCCCcccccccccc-chhcch-hHhhccCCcccEEEccCCCccccc--CcccCCCCCCCEEEecCC-Ccc--ccChhhhc
Q 037138 477 PTCPHLLSLFPNIN-RLKTIA-RRFFDFMPSLTVLNLSNNGFLTKL--RPGISKLVSLQYLNLSKT-SIR--ELPKELKA 549 (806)
Q Consensus 477 ~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~~~~~~~l--p~~i~~l~~L~~L~Ls~n-~l~--~lp~~i~~ 549 (806)
.+|+++..|.+.++ .+++.. ..+-..++.|++|+|..|..++.. -.....+++|+||++++| .|+ .+-.-...
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 68999999998888 343332 233456899999999997555432 123456899999999998 454 34445567
Q ss_pred CCCCcEEecCCCccccccccccc----cCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecch
Q 037138 550 LVNLKYLNLEHSRYLHTIPRQLI----CSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSF 625 (806)
Q Consensus 550 L~~L~~L~L~~~~~l~~lp~~~~----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 625 (806)
+.+|+.+.+++|.- ++.+.+ ..+.-+-.+++..|..... ......-..+..|+.|+.+....
T Consensus 241 ~~~l~~~~~kGC~e---~~le~l~~~~~~~~~i~~lnl~~c~~lTD-----------~~~~~i~~~c~~lq~l~~s~~t~ 306 (483)
T KOG4341|consen 241 CKELEKLSLKGCLE---LELEALLKAAAYCLEILKLNLQHCNQLTD-----------EDLWLIACGCHALQVLCYSSCTD 306 (483)
T ss_pred chhhhhhhhccccc---ccHHHHHHHhccChHhhccchhhhccccc-----------hHHHHHhhhhhHhhhhcccCCCC
Confidence 77788888888742 222222 2344566666667644332 11222334567788888775443
Q ss_pred hhHHHhhhchhhccccccceeccCCCCCccccccc-ccccccceEeeccccCccc------------cceeeecccCCcC
Q 037138 626 FALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSL-ADLKHLDKLDLIYCRNLEE------------FKKVMIDFCIKLR 692 (806)
Q Consensus 626 ~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~------------L~~L~l~~c~~l~ 692 (806)
.+-..+.....-...++.+.+..+..........+ .++++|+.+++..|..... |+.+.++.|...+
T Consensus 307 ~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~it 386 (483)
T KOG4341|consen 307 ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELIT 386 (483)
T ss_pred CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhh
Confidence 22211111111123344444444443222211122 3568889898888754332 7888888887776
Q ss_pred CCC------ccccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceecccccccccccccCCCCCchHHHH
Q 037138 693 EVT------WLVFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKSIYWNALPSHIWKKL 766 (806)
Q Consensus 693 ~~~------~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~l 766 (806)
+.. ....+..|..|.|++|+.+++- .+..+..+++|+.+++.+|....+ ...+.+
T Consensus 387 D~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~-----------~Le~l~~c~~Leri~l~~~q~vtk--------~~i~~~ 447 (483)
T KOG4341|consen 387 DEGIRHLSSSSCSLEGLEVLELDNCPLITDA-----------TLEHLSICRNLERIELIDCQDVTK--------EAISRF 447 (483)
T ss_pred hhhhhhhhhccccccccceeeecCCCCchHH-----------HHHHHhhCcccceeeeechhhhhh--------hhhHHH
Confidence 651 2245678999999999985442 113455667888888888765543 223333
Q ss_pred HccCCCCCCCCC
Q 037138 767 IMGCAGLKKLPL 778 (806)
Q Consensus 767 l~~c~~L~~L~l 778 (806)
..+||+++..-+
T Consensus 448 ~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 448 ATHLPNIKVHAY 459 (483)
T ss_pred HhhCccceehhh
Confidence 567888876443
No 121
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.08 E-value=0.00012 Score=73.93 Aligned_cols=176 Identities=18% Similarity=0.208 Sum_probs=109.4
Q ss_pred HHHHHHHHhcC---CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCC----eEEEEEeCCcccHHHHHHHHHHHhCCC
Q 037138 143 TLEKVWRCLGE---ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFD----VVIWVVVSKDMQLERIQEKIGERIGLL 215 (806)
Q Consensus 143 ~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~----~~~wv~~s~~~~~~~~~~~i~~~l~~~ 215 (806)
.++++.+++.. ...+-+.|||.+|+|||++++++.... .....-+ .++.|.....++...+...|+.+++.+
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h-p~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLH-PPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHC-CCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 34445555533 356779999999999999999999876 2221111 577888889999999999999999987
Q ss_pred C--CCCHHHHHHHHHHHhCC-CcEEEEEecCCCcc-----Cccccccc---CCC-CCCcEEEEecCC-------------
Q 037138 216 E--NRSLEERASGIFKILSK-KKFLLLLDDVWERI-----DLTKVGIP---FPS-KNTSKVVFTTRL------------- 270 (806)
Q Consensus 216 ~--~~~~~~~~~~l~~~l~~-k~~LlvlDdv~~~~-----~~~~~~~~---~~~-~~~s~iivTtr~------------- 270 (806)
. ..+.......+...++. +--+||+|++.+.- ....+... +.+ -.-+-|.+-|+.
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~ 203 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS 203 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh
Confidence 6 44444444444455543 44589999997621 11111111 222 344566777765
Q ss_pred ---ceecccCChHHH-HHHHHhhhC--CCccCCCCChHHHHHHHHHHhCCchHHH
Q 037138 271 ---IFKVECLRDKEA-WELFLDKVG--EETLDSHLDIPKLAHTLAKECGGLPLAL 319 (806)
Q Consensus 271 ---~~~l~~L~~~e~-~~lf~~~~~--~~~~~~~~~~~~~~~~i~~~c~GlPlai 319 (806)
++.++.-..++- ..|+..... .-...+.-...++++.|...++|+.--+
T Consensus 204 RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 204 RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 556655554444 444432211 1111222344789999999999987443
No 122
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=5.9e-05 Score=85.38 Aligned_cols=182 Identities=15% Similarity=0.110 Sum_probs=100.5
Q ss_pred CccccchHHHHHHHHHhcCCCce-EEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEE-eCCcccHHHHHHHHHHHh
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVG-IIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVV-VSKDMQLERIQEKIGERI 212 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~~i~~~l 212 (806)
..++|.+..++.+.+.+..+.+. .+.++|+.|+||||+|+.+++... -....+.-.|-. +....+.....+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~-c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC-CCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 46899999999999988876654 588999999999999999988762 111110000100 000000000111110000
Q ss_pred CC-------CCCCCHHHHHHHHHHH----hCCCcEEEEEecCCCcc--CcccccccCCC-CCCcEEEEecCC--------
Q 037138 213 GL-------LENRSLEERASGIFKI----LSKKKFLLLLDDVWERI--DLTKVGIPFPS-KNTSKVVFTTRL-------- 270 (806)
Q Consensus 213 ~~-------~~~~~~~~~~~~l~~~----l~~k~~LlvlDdv~~~~--~~~~~~~~~~~-~~~s~iivTtr~-------- 270 (806)
.. ......++..+.+... ..+.+-++|+|+++... ..+.+...+.. ...+.+|++|..
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI 174 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 00 0011122222111111 23556688999987542 34445555544 445555555543
Q ss_pred -----ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchH-HHH
Q 037138 271 -----IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPL-ALI 320 (806)
Q Consensus 271 -----~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~ 320 (806)
.+++.+++.++....+.+.+......- -.+.+..|++.++|..- |+.
T Consensus 175 ~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I---~~eal~~La~~s~Gdlr~al~ 227 (620)
T PRK14954 175 ASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI---DADALQLIARKAQGSMRDAQS 227 (620)
T ss_pred HhhceEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHH
Confidence 688999999998888877654322111 15678889999998543 443
No 123
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=7.8e-05 Score=87.25 Aligned_cols=165 Identities=13% Similarity=0.167 Sum_probs=102.5
Q ss_pred CccccchHHHHHHHHHhcCCCce-EEEEEccCCCCHHHHHHHHHhhcCCCC---------------------CCCCeEEE
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVG-IIGLYGMGGVGKTTLLAQINNKFLDTP---------------------NDFDVVIW 192 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~---------------------~~F~~~~w 192 (806)
..+||.+..++.|.+.+..+++. .+.++|+.|+||||+|+.+.+...-.. .++| +++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v~e 93 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-VTE 93 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-EEE
Confidence 35899999999999999877665 578999999999999999988762100 1122 223
Q ss_pred EEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecC
Q 037138 193 VVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTR 269 (806)
Q Consensus 193 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr 269 (806)
++-.....+.++- ++.+.+ ...-..++.-++|||++... ...+.+...+.. ...+.+|++|.
T Consensus 94 idaas~~~Vd~iR-~l~~~~--------------~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 94 IDAASHGGVDDAR-ELRERA--------------FFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred ecccccCCHHHHH-HHHHHH--------------HhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 3222222222221 111111 01113456668999999753 344555555555 45666665554
Q ss_pred C-------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHH
Q 037138 270 L-------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLA 318 (806)
Q Consensus 270 ~-------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 318 (806)
. .|.+..++.++...++.+.+....... -.+....|++.++|.+..
T Consensus 159 ~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i---d~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 159 EPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV---EPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred ChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHH
Confidence 3 688999999999888887664332111 144567889999987743
No 124
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=9.9e-05 Score=81.69 Aligned_cols=166 Identities=16% Similarity=0.203 Sum_probs=102.5
Q ss_pred CccccchHHHHHHHHHhcCCCce-EEEEEccCCCCHHHHHHHHHhhcCCC--C-----------------CCCCeEEEEE
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVG-IIGLYGMGGVGKTTLLAQINNKFLDT--P-----------------NDFDVVIWVV 194 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~--~-----------------~~F~~~~wv~ 194 (806)
..++|-+..++.+...+..++.. ++-++|+.|+||||+|+.+++..... . .+++ ++.+.
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d-v~eld 92 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID-IIEMD 92 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-EEEec
Confidence 45899999999999999777665 56899999999999999988765110 0 1111 22222
Q ss_pred eCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-
Q 037138 195 VSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL- 270 (806)
Q Consensus 195 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~- 270 (806)
.+....+.++.. ++.+... .-..+++-++|+|++... ...+.+...+.. ...+.+|++|.+
T Consensus 93 aas~~gId~IRe-lie~~~~--------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~ 157 (535)
T PRK08451 93 AASNRGIDDIRE-LIEQTKY--------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDP 157 (535)
T ss_pred cccccCHHHHHH-HHHHHhh--------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECCh
Confidence 222112222211 1111100 001245668999999753 233444444434 456666666654
Q ss_pred ------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHH
Q 037138 271 ------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLAL 319 (806)
Q Consensus 271 ------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 319 (806)
.+++.+++.++....+...+....... -.+.+..|++.++|.+--+
T Consensus 158 ~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i---~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 158 LKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY---EPEALEILARSGNGSLRDT 215 (535)
T ss_pred hhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHH
Confidence 789999999999988887764433111 1567889999999988544
No 125
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.05 E-value=2.3e-05 Score=83.67 Aligned_cols=106 Identities=17% Similarity=0.168 Sum_probs=71.9
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHH-hC
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGER-IG 213 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-l~ 213 (806)
.++++.+...+.+...|.. .+.|.++|++|+|||++|+.+++.. .....|+.+.||++++.++..++...+.-. .+
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCCCCCC
Confidence 3568889999999988864 3577789999999999999999987 445678899999999998877765433110 11
Q ss_pred CCCCCCHHHHHHHHHHHh--CCCcEEEEEecCCC
Q 037138 214 LLENRSLEERASGIFKIL--SKKKFLLLLDDVWE 245 (806)
Q Consensus 214 ~~~~~~~~~~~~~l~~~l--~~k~~LlvlDdv~~ 245 (806)
...... ...+.+...- .++++++|+|++..
T Consensus 252 y~~~~G--~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 252 FRRKDG--IFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred eEecCc--hHHHHHHHHHhcccCCcEEEEehhhc
Confidence 000000 0111112221 24789999999964
No 126
>PRK06620 hypothetical protein; Validated
Probab=98.05 E-value=1.1e-05 Score=79.29 Aligned_cols=117 Identities=14% Similarity=0.073 Sum_probs=65.9
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcE
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKF 236 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~ 236 (806)
+.+.|+|++|+|||+|++.+++.. .. .++. ..+. . . +.. +..-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~------------------~-~-------~~~-~~~d 87 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF------------------N-E-------EIL-EKYN 87 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh------------------c-h-------hHH-hcCC
Confidence 668999999999999999988865 11 1111 0000 0 0 011 1235
Q ss_pred EEEEecCCCccCcccccccCCC--CCCcEEEEecCC------------------ceecccCChHHHHHHHHhhhCCCccC
Q 037138 237 LLLLDDVWERIDLTKVGIPFPS--KNTSKVVFTTRL------------------IFKVECLRDKEAWELFLDKVGEETLD 296 (806)
Q Consensus 237 LlvlDdv~~~~~~~~~~~~~~~--~~~s~iivTtr~------------------~~~l~~L~~~e~~~lf~~~~~~~~~~ 296 (806)
++++||+....+ ..+...+.. ..|..||+|++. .+.+++++.++-..++++.+......
T Consensus 88 ~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~ 166 (214)
T PRK06620 88 AFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVT 166 (214)
T ss_pred EEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 788999963221 122222222 457789999986 46666666666666665554322111
Q ss_pred CCCChHHHHHHHHHHhCC
Q 037138 297 SHLDIPKLAHTLAKECGG 314 (806)
Q Consensus 297 ~~~~~~~~~~~i~~~c~G 314 (806)
. -+++...|++.+.|
T Consensus 167 l---~~ev~~~L~~~~~~ 181 (214)
T PRK06620 167 I---SRQIIDFLLVNLPR 181 (214)
T ss_pred C---CHHHHHHHHHHccC
Confidence 1 14555555555554
No 127
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.04 E-value=9e-05 Score=80.28 Aligned_cols=158 Identities=19% Similarity=0.270 Sum_probs=92.6
Q ss_pred CccccchHHHHHHHHHhcC-------------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccH
Q 037138 135 PTIVGLNSTLEKVWRCLGE-------------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQL 201 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 201 (806)
.++.|++..++++.+.+.. ...+-|.++|++|+|||++|+++++.. ... |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----
Confidence 3578999999999886621 245678999999999999999999986 222 222221
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHH-hCCCcEEEEEecCCCcc----------C--c-ccccccC---C---CCCC
Q 037138 202 ERIQEKIGERIGLLENRSLEERASGIFKI-LSKKKFLLLLDDVWERI----------D--L-TKVGIPF---P---SKNT 261 (806)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~~-l~~k~~LlvlDdv~~~~----------~--~-~~~~~~~---~---~~~~ 261 (806)
..+.... . . ........+.+. -...+.+|+|||++... + . ..+...+ . ...+
T Consensus 199 ~~l~~~~---~----g-~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 270 (389)
T PRK03992 199 SELVQKF---I----G-EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGN 270 (389)
T ss_pred HHHhHhh---c----c-chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCC
Confidence 1111111 0 1 111122222222 23567899999997521 0 0 0111111 1 1235
Q ss_pred cEEEEecCC----------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch
Q 037138 262 SKVVFTTRL----------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP 316 (806)
Q Consensus 262 s~iivTtr~----------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 316 (806)
..||.||.. .+.+++.+.++-.++|+.++.........++ ..+++.+.|.-
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~s 337 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGAS 337 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCCC
Confidence 677878864 5788999999999999987754332222233 45566666653
No 128
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.03 E-value=1.8e-07 Score=101.61 Aligned_cols=104 Identities=26% Similarity=0.288 Sum_probs=57.6
Q ss_pred CCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcc-cCCCCCCCEEEecCCCccccChhhhcCCCCcEEe
Q 037138 479 CPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPG-ISKLVSLQYLNLSKTSIRELPKELKALVNLKYLN 557 (806)
Q Consensus 479 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~-i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~ 557 (806)
++.|+.|+|++|+++++. ++..+++|+.|||++| .+..+|.- ...+ +|+.|+|++|.+++|- ++.+|.+|+.||
T Consensus 186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrnN~l~tL~-gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRNNALTTLR-GIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhh-hheeeeecccHHHhhh-hHHhhhhhhccc
Confidence 355666666666665554 3566666666666666 34444421 1222 2666666666666553 566666666666
Q ss_pred cCCCcccc--ccccccccCCCCCcEEEeecccCC
Q 037138 558 LEHSRYLH--TIPRQLICSFSMLHVLRMVNCDYS 589 (806)
Q Consensus 558 L~~~~~l~--~lp~~~~~~l~~L~~L~l~~~~~~ 589 (806)
+++|-+.. .+.+ ++.|..|+.|+|.||.+.
T Consensus 261 lsyNll~~hseL~p--LwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEP--LWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhHhhhhcchhhhH--HHHHHHHHHHhhcCCccc
Confidence 66663222 1111 445566666666666553
No 129
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.0001 Score=84.18 Aligned_cols=174 Identities=13% Similarity=0.143 Sum_probs=101.1
Q ss_pred CccccchHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhC
Q 037138 135 PTIVGLNSTLEKVWRCLGEERV-GIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIG 213 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 213 (806)
..++|.+..++.+..++..+.+ ..+.++|+.|+||||+|+.+++.. ........ ....+.....+.|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l-~c~~~~~~------~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV-NCTTNDPK------GRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh-cCCCCCCC------CCCCccCHHHHHHhcCCC
Confidence 4689999999999988877655 456899999999999999999876 11110000 000011112222221111
Q ss_pred CC-------CCCCHHHHHHHHHHH-----hCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC--------
Q 037138 214 LL-------ENRSLEERASGIFKI-----LSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL-------- 270 (806)
Q Consensus 214 ~~-------~~~~~~~~~~~l~~~-----l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~-------- 270 (806)
.. .....++. +.+.+. ..+++-++|+|++... ...+.+...+.. ...+.+|++|..
T Consensus 89 ~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 89 VDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 00 00111111 111111 1245678999998643 334445444444 445666666644
Q ss_pred -----ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHH
Q 037138 271 -----IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLAL 319 (806)
Q Consensus 271 -----~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 319 (806)
.+.+..++.++....+...+....... -.+.+..|++.++|.+..+
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i---~~eal~~La~~s~Gdlr~a 218 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGINL---EPGALEAIARAATGSMRDA 218 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 677888899888888877764432111 1466788999999988544
No 130
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.00 E-value=5e-05 Score=77.82 Aligned_cols=45 Identities=24% Similarity=0.318 Sum_probs=33.5
Q ss_pred ccccchHHHHHHHHHhc---------------CCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 136 TIVGLNSTLEKVWRCLG---------------EERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~---------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.++|.+..+++|.+... .+....+.++|++|+||||+|+.+++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 47888877766654321 1245678899999999999999998864
No 131
>CHL00181 cbbX CbbX; Provisional
Probab=97.99 E-value=0.0001 Score=76.05 Aligned_cols=141 Identities=11% Similarity=0.098 Sum_probs=73.8
Q ss_pred ccccchHHHHHHHHHhc--------C-------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCccc
Q 037138 136 TIVGLNSTLEKVWRCLG--------E-------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQ 200 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~--------~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 200 (806)
.++|.+..+++|.++.. . .....+.++|++|+||||+|+.+++... ..+.-...-|+.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~-~~g~~~~~~~~~v~~--- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILY-KLGYIKKGHLLTVTR--- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHH-HcCCCCCCceEEecH---
Confidence 46777776665544321 0 1233578999999999999999988651 111111122444442
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc-----------cCcccccccCCC-CCCcEEEEec
Q 037138 201 LERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWER-----------IDLTKVGIPFPS-KNTSKVVFTT 268 (806)
Q Consensus 201 ~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~-----------~~~~~~~~~~~~-~~~s~iivTt 268 (806)
.++... ... .........+.+ . ..-+|++|++... ...+.+...+.. ..+.+||+++
T Consensus 100 -~~l~~~----~~g---~~~~~~~~~l~~-a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag 168 (287)
T CHL00181 100 -DDLVGQ----YIG---HTAPKTKEVLKK-A--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAG 168 (287)
T ss_pred -HHHHHH----Hhc---cchHHHHHHHHH-c--cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 122222 111 111111112222 2 2349999999642 111222222333 3455677776
Q ss_pred CC-------------------ceecccCChHHHHHHHHhhhC
Q 037138 269 RL-------------------IFKVECLRDKEAWELFLDKVG 291 (806)
Q Consensus 269 r~-------------------~~~l~~L~~~e~~~lf~~~~~ 291 (806)
.. .+.+++++.+|..+++...+.
T Consensus 169 ~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 169 YKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred CcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHH
Confidence 42 567777777777777766653
No 132
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=7.3e-07 Score=87.08 Aligned_cols=134 Identities=18% Similarity=0.087 Sum_probs=84.9
Q ss_pred Cccccccccccchhcc-hhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCC-Cccc--cChhhhcCCCCcE
Q 037138 480 PHLLSLFPNINRLKTI-ARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKT-SIRE--LPKELKALVNLKY 555 (806)
Q Consensus 480 ~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n-~l~~--lp~~i~~L~~L~~ 555 (806)
+.|+.|+|++..++.- ....++.|.+|+.|.|.+++.-..+-..|.+-.+|+.|||+.| .+++ +.--+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4577888887765432 2345677888888888888666666667778888888888876 5663 2334678888888
Q ss_pred EecCCCccccccccccccC-CCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEec
Q 037138 556 LNLEHSRYLHTIPRQLICS-FSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALK 623 (806)
Q Consensus 556 L~L~~~~~l~~lp~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 623 (806)
|+|+.|......-.-.+.. -.+|..|+++|+...-. ......-...+++|..|+++.+
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~----------~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ----------KSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh----------hhHHHHHHHhCCceeeeccccc
Confidence 8888886444332211111 35778888877643211 0112223355677777777654
No 133
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.00021 Score=78.70 Aligned_cols=164 Identities=15% Similarity=0.178 Sum_probs=99.9
Q ss_pred CccccchHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHhhcCCC--------------------CCCCCeEEEE
Q 037138 135 PTIVGLNSTLEKVWRCLGEERV-GIIGLYGMGGVGKTTLLAQINNKFLDT--------------------PNDFDVVIWV 193 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~~F~~~~wv 193 (806)
.+++|.+..++.+.+.+..+.. ..+.++|+.|+||||+|+.+++..... ..+++ .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i 95 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEI 95 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEe
Confidence 4689999999999999977665 567899999999999999998865210 01122 1222
Q ss_pred EeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC
Q 037138 194 VVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL 270 (806)
Q Consensus 194 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~ 270 (806)
.-.....+.++ +.+.+.+. ..-..+++-++|+|++... ...+.+...+.. ..+..+|++|..
T Consensus 96 ~g~~~~gid~i-r~i~~~l~--------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~ 160 (451)
T PRK06305 96 DGASHRGIEDI-RQINETVL--------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTE 160 (451)
T ss_pred eccccCCHHHH-HHHHHHHH--------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCC
Confidence 21111112221 11211111 0012356778999998643 233344444444 445666665543
Q ss_pred -------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchH
Q 037138 271 -------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPL 317 (806)
Q Consensus 271 -------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 317 (806)
.+.+.++++++....+...+....... -.+.+..|++.++|.+-
T Consensus 161 ~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i---~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 161 IHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET---SREALLPIARAAQGSLR 217 (451)
T ss_pred hHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHH
Confidence 688999999999888877664322111 15667889999998653
No 134
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.94 E-value=0.00013 Score=74.60 Aligned_cols=151 Identities=19% Similarity=0.265 Sum_probs=101.4
Q ss_pred CCccccchHHHHHHHHHhcCCC---ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHH
Q 037138 134 EPTIVGLNSTLEKVWRCLGEER---VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGE 210 (806)
Q Consensus 134 ~~~~~gr~~~~~~l~~~l~~~~---~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 210 (806)
++.+.+|+.+++.+...+.+.. ++.|-|+|..|.|||.+.+++.+.. .. ..+|+++-..++.+.++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NL---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CC---cceeeehHHhccHHHHHHHHHH
Confidence 4678899999999999996642 4566899999999999999999986 22 3589999999999999999999
Q ss_pred HhCCCC--C----CCHHH---HHHHHHH--Hh--CCCcEEEEEecCCCccCccccc----ccCCC--CCCcEEEEecCC-
Q 037138 211 RIGLLE--N----RSLEE---RASGIFK--IL--SKKKFLLLLDDVWERIDLTKVG----IPFPS--KNTSKVVFTTRL- 270 (806)
Q Consensus 211 ~l~~~~--~----~~~~~---~~~~l~~--~l--~~k~~LlvlDdv~~~~~~~~~~----~~~~~--~~~s~iivTtr~- 270 (806)
+.+..+ + .+.+. ....+.+ .. +++.++||||+++...|.+.+. ..+.. ....-+|+++-.
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~ 158 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPS 158 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 985222 1 11111 1222222 11 2468999999997654443321 01111 222334444432
Q ss_pred ---------------ceecccCChHHHHHHHHhhh
Q 037138 271 ---------------IFKVECLRDKEAWELFLDKV 290 (806)
Q Consensus 271 ---------------~~~l~~L~~~e~~~lf~~~~ 290 (806)
++..+.-+.+|...++.+.-
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 56777888888888876543
No 135
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.94 E-value=7.3e-05 Score=82.15 Aligned_cols=162 Identities=20% Similarity=0.248 Sum_probs=95.7
Q ss_pred cccchHHH--HHHHHHhcCC-CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCC-eEEEEEeCCcccHHHHHHHHHHHh
Q 037138 137 IVGLNSTL--EKVWRCLGEE-RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFD-VVIWVVVSKDMQLERIQEKIGERI 212 (806)
Q Consensus 137 ~~gr~~~~--~~l~~~l~~~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l 212 (806)
++|-.... ....++..+. ...-+.|+|++|+|||+||+++++... ..+.+ .++|++. .++...+...+
T Consensus 108 v~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~~ 179 (440)
T PRK14088 108 VVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDSM 179 (440)
T ss_pred ccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHH
Confidence 45754332 2333333322 244699999999999999999999862 22222 4667753 34555565555
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCccC---c-ccccccCCC--CCCcEEEEecCC----------------
Q 037138 213 GLLENRSLEERASGIFKILSKKKFLLLLDDVWERID---L-TKVGIPFPS--KNTSKVVFTTRL---------------- 270 (806)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~---~-~~~~~~~~~--~~~s~iivTtr~---------------- 270 (806)
.. .... .+.+.+..+.-+|++||+..... . +.+...+.. ..|..||+||..
T Consensus 180 ~~---~~~~----~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~ 252 (440)
T PRK14088 180 KE---GKLN----EFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRF 252 (440)
T ss_pred hc---ccHH----HHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHH
Confidence 32 1222 23333334456899999974321 1 223333333 445678888853
Q ss_pred ----ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch
Q 037138 271 ----IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP 316 (806)
Q Consensus 271 ----~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 316 (806)
.+.+++.+.+.-.+++++.+......-+ +++...|++.+.|.-
T Consensus 253 ~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~~ 299 (440)
T PRK14088 253 QMGLVAKLEPPDEETRKKIARKMLEIEHGELP---EEVLNFVAENVDDNL 299 (440)
T ss_pred hcCceEeeCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHhccccCH
Confidence 5578888888888888777643321211 566777777777654
No 136
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.93 E-value=7.9e-05 Score=88.36 Aligned_cols=168 Identities=15% Similarity=0.174 Sum_probs=94.0
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCC--C-CCCCeEEE-EEeCCcccHHHHHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDT--P-NDFDVVIW-VVVSKDMQLERIQEKIGE 210 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~-~~F~~~~w-v~~s~~~~~~~~~~~i~~ 210 (806)
..++||+++++++++.|......-+.++|++|+||||+|+.++...... . ...+..+| +.++.-..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a---------- 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA---------- 256 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc----------
Confidence 3579999999999999987766677799999999999999999976211 0 01123333 32221000
Q ss_pred HhCCCCCCCHHHHHHHHHHHh--CCCcEEEEEecCCCcc------CcccccccC-CC-CCC-cEEEEecCC---------
Q 037138 211 RIGLLENRSLEERASGIFKIL--SKKKFLLLLDDVWERI------DLTKVGIPF-PS-KNT-SKVVFTTRL--------- 270 (806)
Q Consensus 211 ~l~~~~~~~~~~~~~~l~~~l--~~k~~LlvlDdv~~~~------~~~~~~~~~-~~-~~~-s~iivTtr~--------- 270 (806)
+.....+.+...+.+.+.+ .+++.+|++|++.... .-.+....+ |. ..| -++|-||..
T Consensus 257 --g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~ 334 (852)
T TIGR03345 257 --GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKKYFEK 334 (852)
T ss_pred --ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhc
Confidence 0000111222222222222 2578999999986431 111111112 23 333 455555442
Q ss_pred ---------ceecccCChHHHHHHHHhhhCCCcc-CCCCChHHHHHHHHHHhCC
Q 037138 271 ---------IFKVECLRDKEAWELFLDKVGEETL-DSHLDIPKLAHTLAKECGG 314 (806)
Q Consensus 271 ---------~~~l~~L~~~e~~~lf~~~~~~~~~-~~~~~~~~~~~~i~~~c~G 314 (806)
.+.+++++.++...++......-.. ..-.--.+....+++.+.+
T Consensus 335 d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 335 DPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred cHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 7899999999999997544322110 0001124455666666654
No 137
>PF14516 AAA_35: AAA-like domain
Probab=97.91 E-value=0.001 Score=70.54 Aligned_cols=178 Identities=14% Similarity=0.129 Sum_probs=110.2
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCc-----ccHHHHHHH--
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKD-----MQLERIQEK-- 207 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-----~~~~~~~~~-- 207 (806)
+..|.|...-+++.+.+.+. -..+.|.|+-.+|||+|...+.+.. + +..+ .++++++..- .+..+.++.
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l-~-~~~~-~~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERL-Q-QQGY-RCVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHH-H-HCCC-EEEEEEeecCCCcccCCHHHHHHHHH
Confidence 45688987777777777653 3588999999999999999999887 2 2333 4567876542 245545544
Q ss_pred --HHHHhCCCC---------CCCHHHHHHHHHHHh---CCCcEEEEEecCCCccCc----ccccccCC----------C-
Q 037138 208 --IGERIGLLE---------NRSLEERASGIFKIL---SKKKFLLLLDDVWERIDL----TKVGIPFP----------S- 258 (806)
Q Consensus 208 --i~~~l~~~~---------~~~~~~~~~~l~~~l---~~k~~LlvlDdv~~~~~~----~~~~~~~~----------~- 258 (806)
|.++++... ..+.......+.+.+ .+++.+|+||+|+..... .++...+. .
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~ 166 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW 166 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc
Confidence 445554432 111122223344432 268999999999753221 11111110 0
Q ss_pred CCCcEEEEecC-C---------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHh
Q 037138 259 KNTSKVVFTTR-L---------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITT 322 (806)
Q Consensus 259 ~~~s~iivTtr-~---------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 322 (806)
..=+-|++.+. . .+.|++++.+|...|..++-..-. .+..++|...+||+|.-+..+
T Consensus 167 ~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~Lv~~~ 239 (331)
T PF14516_consen 167 QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYLVQKA 239 (331)
T ss_pred ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHHHHHH
Confidence 11111222211 1 789999999999999887632211 233899999999999988888
Q ss_pred h
Q 037138 323 G 323 (806)
Q Consensus 323 g 323 (806)
+
T Consensus 240 ~ 240 (331)
T PF14516_consen 240 C 240 (331)
T ss_pred H
Confidence 8
No 138
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00032 Score=77.78 Aligned_cols=166 Identities=14% Similarity=0.128 Sum_probs=97.4
Q ss_pred CccccchHHHHHHHHHhcCCCce-EEEEEccCCCCHHHHHHHHHhhcCC--CC----------------CCCCeEEEEEe
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVG-IIGLYGMGGVGKTTLLAQINNKFLD--TP----------------NDFDVVIWVVV 195 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~--~~----------------~~F~~~~wv~~ 195 (806)
..++|.+..++.+.+++..+.+. .+.++|+.|+||||+|+.++..... .. +.|.-.+++..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 35799999999999999876554 4678999999999999999886510 00 01112233322
Q ss_pred CCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-
Q 037138 196 SKDMQLERIQEKIGERIGLLENRSLEERASGIFK-ILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL- 270 (806)
Q Consensus 196 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~- 270 (806)
+....+.++ +.+. +.+.. -..+++-++|+|++... ...+.+...+.. .....+|++|..
T Consensus 96 as~~gvd~i-r~I~---------------~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~ 159 (486)
T PRK14953 96 ASNRGIDDI-RALR---------------DAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEY 159 (486)
T ss_pred ccCCCHHHH-HHHH---------------HHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCH
Confidence 222111111 1111 11111 12356779999998743 223444444444 344555554432
Q ss_pred ------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHH
Q 037138 271 ------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLAL 319 (806)
Q Consensus 271 ------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 319 (806)
.+.+.+++.++....+...+....... -.+.+..|++.++|.+-.+
T Consensus 160 ~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i---d~~al~~La~~s~G~lr~a 217 (486)
T PRK14953 160 DKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY---EEKALDLLAQASEGGMRDA 217 (486)
T ss_pred HHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 678888888888888777654322111 1456677888888866443
No 139
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.90 E-value=3.9e-05 Score=81.04 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=50.1
Q ss_pred hccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCC-CccccChhhhcCCCCcEEecCCCccccccccccccCCCCC
Q 037138 500 FDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKT-SIRELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSML 578 (806)
Q Consensus 500 ~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n-~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L 578 (806)
+..+.+++.|++++| .+..+|. -..+|+.|.+++| .++.+|..+ ..+|++|++++|..+..+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-------cc
Confidence 445678888888888 6777772 2246888888875 666777655 25788888888855566664 36
Q ss_pred cEEEeecc
Q 037138 579 HVLRMVNC 586 (806)
Q Consensus 579 ~~L~l~~~ 586 (806)
+.|++..+
T Consensus 115 e~L~L~~n 122 (426)
T PRK15386 115 RSLEIKGS 122 (426)
T ss_pred ceEEeCCC
Confidence 66666543
No 140
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.89 E-value=0.00012 Score=77.61 Aligned_cols=115 Identities=14% Similarity=0.153 Sum_probs=69.4
Q ss_pred CccccchHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhC
Q 037138 135 PTIVGLNSTLEKVWRCLGEERV-GIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIG 213 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 213 (806)
..++|.+...+.+..++..+.. .++.++|++|+||||+|+.+++.. .. ....++.+. .....+...+. ...
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~---~~~~i~~~~-~~~~~i~~~l~-~~~ 92 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GA---EVLFVNGSD-CRIDFVRNRLT-RFA 92 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Cc---cceEeccCc-ccHHHHHHHHH-HHH
Confidence 4579999999999999877654 566679999999999999999875 12 133444444 22222211111 110
Q ss_pred CCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc---CcccccccCCC-CCCcEEEEecCC
Q 037138 214 LLENRSLEERASGIFKILSKKKFLLLLDDVWERI---DLTKVGIPFPS-KNTSKVVFTTRL 270 (806)
Q Consensus 214 ~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~---~~~~~~~~~~~-~~~s~iivTtr~ 270 (806)
.. ..+.+.+-++|+||+.... ....+...+.. ..++++|+||..
T Consensus 93 -----------~~--~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~ 140 (316)
T PHA02544 93 -----------ST--VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANN 140 (316)
T ss_pred -----------Hh--hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCC
Confidence 00 0012445689999997541 12223332333 567788888865
No 141
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00034 Score=78.87 Aligned_cols=165 Identities=15% Similarity=0.159 Sum_probs=100.6
Q ss_pred CccccchHHHHHHHHHhcCCCce-EEEEEccCCCCHHHHHHHHHhhcCCC-------------------CCCCCeEEEEE
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVG-IIGLYGMGGVGKTTLLAQINNKFLDT-------------------PNDFDVVIWVV 194 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~~F~~~~wv~ 194 (806)
..++|-+..++.+..++..+... .+-++|+.|+||||+|+.+++...-. ..+++. +++.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv-~~id 94 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV-IEID 94 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe-EEec
Confidence 46899999999999999876554 58899999999999999999876210 011221 1221
Q ss_pred eCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC
Q 037138 195 VSKDMQLERIQEKIGERIGLLENRSLEERASGIFK-ILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL 270 (806)
Q Consensus 195 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~ 270 (806)
......+.++. ++ .+.+.. -..+++-++|+|++... ..++.+...+.. ...+.+|.+|..
T Consensus 95 gas~~~vddIr-~l---------------~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 95 GASNTSVQDVR-QI---------------KEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred CcccCCHHHHH-HH---------------HHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence 11111111111 11 111111 12456678999998754 234455545544 455666665543
Q ss_pred -------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHH
Q 037138 271 -------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLAL 319 (806)
Q Consensus 271 -------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 319 (806)
.+.+.+++.++....+.+.+....... -.+.+..|++.++|.+-.+
T Consensus 159 ~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i---d~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 159 VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY---EDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred hHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 578888999888888877664332111 1566777888888877443
No 142
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1.5e-05 Score=55.83 Aligned_cols=40 Identities=43% Similarity=0.613 Sum_probs=31.5
Q ss_pred CcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccC
Q 037138 504 PSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELP 544 (806)
Q Consensus 504 ~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp 544 (806)
++|++|++++| .+..+|+.+++|++|++|++++|.|+.+|
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 46888999998 55677877889999999999999888765
No 143
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00029 Score=80.22 Aligned_cols=168 Identities=14% Similarity=0.153 Sum_probs=99.1
Q ss_pred CccccchHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHhhcCCCCC----------------CCCeEEEEEeCC
Q 037138 135 PTIVGLNSTLEKVWRCLGEERV-GIIGLYGMGGVGKTTLLAQINNKFLDTPN----------------DFDVVIWVVVSK 197 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----------------~F~~~~wv~~s~ 197 (806)
..++|.+..++.+.+++..+++ ..+-++|+.|+||||+|+.++...--... +++ ++++....
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vieidaas 96 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-IIEMDAAS 96 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EEEEeccc
Confidence 3589999999999999977654 45679999999999999999886511000 011 11111111
Q ss_pred cccHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC---
Q 037138 198 DMQLERIQEKIGERIGLLENRSLEERASGIFK-ILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL--- 270 (806)
Q Consensus 198 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~--- 270 (806)
...+.+ .+++ .+.+.. -..+++-++|+|++... ..+..+...+.. ...+.+|++|..
T Consensus 97 n~~vd~-IReL---------------ie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~K 160 (725)
T PRK07133 97 NNGVDE-IREL---------------IENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHK 160 (725)
T ss_pred cCCHHH-HHHH---------------HHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhh
Confidence 111111 1111 111111 12366779999998643 334444444433 344454444433
Q ss_pred ----------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchH-HHHHh
Q 037138 271 ----------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPL-ALITT 322 (806)
Q Consensus 271 ----------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~ 322 (806)
.+.+.+++.++....+...+....... -.+.+..|++.++|.+- |+..+
T Consensus 161 Ll~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i---d~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 161 IPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY---EKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred hhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 788999999999988887654322111 14567889999988664 44443
No 144
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00031 Score=80.11 Aligned_cols=175 Identities=12% Similarity=0.089 Sum_probs=100.0
Q ss_pred CccccchHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhC
Q 037138 135 PTIVGLNSTLEKVWRCLGEERV-GIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIG 213 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 213 (806)
..++|.+..++.+..++..++. ..+-++|+.|+||||+|+.+++... ....+... ....+.....+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~--c~~~~~~~----~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN--CLNSDKPT----PEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc--CCCcCCCC----CCCCcccHHHHHHhcCCC
Confidence 3579999999999999877653 6788999999999999999998862 11111000 000111112222211111
Q ss_pred CC-------CCCCHHHHHHHHHHH-----hCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC--------
Q 037138 214 LL-------ENRSLEERASGIFKI-----LSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL-------- 270 (806)
Q Consensus 214 ~~-------~~~~~~~~~~~l~~~-----l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~-------- 270 (806)
.. .....++.. .+.+. ..+++-++|+|++... ...+.+...+.. ...+.+|++|.+
T Consensus 90 ~D~~ei~~~~~~~vd~IR-eii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIR-ELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred ccEEEEeccccCCHHHHH-HHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 00 001111111 11111 1355668999999754 334445444444 344555554433
Q ss_pred -----ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHH
Q 037138 271 -----IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLAL 319 (806)
Q Consensus 271 -----~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 319 (806)
.+.+..++.++....+...+....... -.+.+..|++.++|.+..+
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i---s~~al~~La~~s~G~lr~A 219 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI---EPEALTLVAQRSQGGLRDA 219 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 677888999888887777664332111 1356788999999877544
No 145
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.86 E-value=1.2e-06 Score=75.60 Aligned_cols=90 Identities=22% Similarity=0.312 Sum_probs=55.3
Q ss_pred CCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEEec
Q 037138 479 CPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYLNL 558 (806)
Q Consensus 479 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L 558 (806)
...|...++++|.+.++|+.+-..++.++.|+|++| -+..+|..+..++.|+.|+++.|.+...|.-+..|.+|-.|+.
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 345555666666666666665556666666666666 4555666666666666666666666666666666666666666
Q ss_pred CCCccccccccc
Q 037138 559 EHSRYLHTIPRQ 570 (806)
Q Consensus 559 ~~~~~l~~lp~~ 570 (806)
.+|. ...+|-.
T Consensus 131 ~~na-~~eid~d 141 (177)
T KOG4579|consen 131 PENA-RAEIDVD 141 (177)
T ss_pred CCCc-cccCcHH
Confidence 6654 3445443
No 146
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.86 E-value=0.00018 Score=74.22 Aligned_cols=141 Identities=11% Similarity=0.072 Sum_probs=74.9
Q ss_pred ccccchHHHHHHHHHhc---------C------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCccc
Q 037138 136 TIVGLNSTLEKVWRCLG---------E------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQ 200 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~---------~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 200 (806)
.++|.+..++++.++.. . ....-+.++|++|+||||+|+.++.... ........-++.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~-~~g~~~~~~~v~v~~--- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILH-RLGYVRKGHLVSVTR--- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHH-HcCCcccceEEEecH---
Confidence 35777766666544321 0 1123588999999999999988877652 112222223444442
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc------cC-----cccccccCCC-CCCcEEEEec
Q 037138 201 LERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWER------ID-----LTKVGIPFPS-KNTSKVVFTT 268 (806)
Q Consensus 201 ~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~------~~-----~~~~~~~~~~-~~~s~iivTt 268 (806)
.++ +..+.. .+.......+.+ . ..-+|+||++... .+ +..+...+.. ..+.+||+++
T Consensus 99 -~~l----~~~~~g---~~~~~~~~~~~~-a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~ 167 (284)
T TIGR02880 99 -DDL----VGQYIG---HTAPKTKEILKR-A--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAG 167 (284)
T ss_pred -HHH----hHhhcc---cchHHHHHHHHH-c--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 122 222211 111111122222 2 2358899999632 01 2223333333 3455666665
Q ss_pred CC-------------------ceecccCChHHHHHHHHhhhC
Q 037138 269 RL-------------------IFKVECLRDKEAWELFLDKVG 291 (806)
Q Consensus 269 r~-------------------~~~l~~L~~~e~~~lf~~~~~ 291 (806)
.. .+++++++.+|-..++...+.
T Consensus 168 ~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 168 YKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred CcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 42 567888888888888877663
No 147
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.86 E-value=0.00019 Score=75.98 Aligned_cols=244 Identities=17% Similarity=0.117 Sum_probs=133.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKK 234 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 234 (806)
....+.|||..|.|||.|++++.+.. .........+.++ .+....+++..+.. ...+..++.. .
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~~----se~f~~~~v~a~~~-------~~~~~Fk~~y--~ 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYLT----SEDFTNDFVKALRD-------NEMEKFKEKY--S 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEecc----HHHHHHHHHHHHHh-------hhHHHHHHhh--c
Confidence 47799999999999999999999987 3444423333332 23333344333321 2233445544 3
Q ss_pred cEEEEEecCCCccC----cccccccCCC--CCCcEEEEecCC--------------------ceecccCChHHHHHHHHh
Q 037138 235 KFLLLLDDVWERID----LTKVGIPFPS--KNTSKVVFTTRL--------------------IFKVECLRDKEAWELFLD 288 (806)
Q Consensus 235 ~~LlvlDdv~~~~~----~~~~~~~~~~--~~~s~iivTtr~--------------------~~~l~~L~~~e~~~lf~~ 288 (806)
-=++++||++-... .+.+...+.. ..|..||+|++. .+.+.+.+.+....++.+
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~k 255 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRK 255 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHH
Confidence 44899999975322 2334444544 456699999976 789999999999999988
Q ss_pred hhCCCccCCCCChHHHHHHHHHHh----CCchHHHHHhh---h--cCCCCHHHHHHHHHHHhhcccCCCCCccchhhhhh
Q 037138 289 KVGEETLDSHLDIPKLAHTLAKEC----GGLPLALITTG---L--GCKKSQEEWSYAIEILRRSASELPGMGKEVYPLLK 359 (806)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~i~~~c----~GlPlai~~~g---~--~~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~ 359 (806)
.+.......+ .+++.-|++.. .-+.-|+..+. . ...-+.+.-+.++..+...... -..+++..+..
T Consensus 256 ka~~~~~~i~---~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~~--itie~I~~~Va 330 (408)
T COG0593 256 KAEDRGIEIP---DEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGEK--ITIEDIQKIVA 330 (408)
T ss_pred HHHhcCCCCC---HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhccccc--CCHHHHHHHHH
Confidence 7754433322 33344444333 23334443333 1 1223555555555444333221 11112222222
Q ss_pred hchhcCChhhHHHHHhhhcCCCCCCcccHHHHHHHHHHcCCccCCCchhHHHhHHHHHHHHHHcccceeeCCCcEEehHH
Q 037138 360 FSYDSLSSEIFRSCLLYCSLFPEDCKIDKIELIECWIGEGFLNGYEGAEVHNQGYYIIGILVHACLLEEVGSDHVRMHDA 439 (806)
Q Consensus 360 ~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~mHdl 439 (806)
-. |.+..+++.. =-.......+.+++.....+|.+.||.+.+..-. +=|.-
T Consensus 331 ~~----------------------y~v~~~dl~s------~~R~~~i~~~RqiamyL~r~lt~~Slp~IG~~Fg-rdHtT 381 (408)
T COG0593 331 EY----------------------YNVKVSDLLS------KSRTRNIVRPRQIAMYLARELTNLSLPEIGKAFG-RDHTT 381 (408)
T ss_pred HH----------------------hCCCHHHhhc------cccccccchHHHHHHHHHHHHccCcHHHHHHHhC-CCccH
Confidence 11 1222222210 0111124456778888889999999988874333 55655
Q ss_pred HHHHHHHHH
Q 037138 440 IRDMTLWIA 448 (806)
Q Consensus 440 v~d~a~~~~ 448 (806)
|-.-.+.+.
T Consensus 382 V~~a~~kI~ 390 (408)
T COG0593 382 VLHAVRKIE 390 (408)
T ss_pred HHHHHHHHH
Confidence 544444444
No 148
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.85 E-value=5.6e-07 Score=97.88 Aligned_cols=99 Identities=33% Similarity=0.337 Sum_probs=42.1
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
+++.+++|++.++.....|++|++|++++|.+..+|.-...++. |.+|.|++| -...+ ..+.+|.+|+.||+++|-|
T Consensus 190 e~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL-~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 190 ESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTTL-RGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred hhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHhh-hhHHhhhhhhccchhHhhh
Confidence 33444444444444334444555555555544444432222233 455555544 22222 1344444555555554433
Q ss_pred cccC--hhhhcCCCCcEEecCCCc
Q 037138 541 RELP--KELKALVNLKYLNLEHSR 562 (806)
Q Consensus 541 ~~lp--~~i~~L~~L~~L~L~~~~ 562 (806)
.... .-++.|..|+.|+|.+|.
T Consensus 267 ~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 267 SEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hcchhhhHHHHHHHHHHHhhcCCc
Confidence 3111 123444444455554443
No 149
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.85 E-value=0.00039 Score=76.23 Aligned_cols=140 Identities=14% Similarity=0.114 Sum_probs=83.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKK 235 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 235 (806)
..-+.|+|+.|+|||+||+++++... .....+++++. ..+...+...+... . .+.++..++ +.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~~------~~f~~~~~~~l~~~---~----~~~f~~~~~-~~ 203 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVRS------ELFTEHLVSAIRSG---E----MQRFRQFYR-NV 203 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEeeH------HHHHHHHHHHHhcc---h----HHHHHHHcc-cC
Confidence 35688999999999999999999872 12234556642 33444444444321 1 123444443 34
Q ss_pred EEEEEecCCCccC----cccccccCCC--CCCcEEEEecCC--------------------ceecccCChHHHHHHHHhh
Q 037138 236 FLLLLDDVWERID----LTKVGIPFPS--KNTSKVVFTTRL--------------------IFKVECLRDKEAWELFLDK 289 (806)
Q Consensus 236 ~LlvlDdv~~~~~----~~~~~~~~~~--~~~s~iivTtr~--------------------~~~l~~L~~~e~~~lf~~~ 289 (806)
-+|++||+..... .+.+...+.. ..|..||+||.. .+.+++++.++-.+++.+.
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 4888899864321 2233333332 346778888854 5678888888888888877
Q ss_pred hCCCccCCCCChHHHHHHHHHHhCCc
Q 037138 290 VGEETLDSHLDIPKLAHTLAKECGGL 315 (806)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~c~Gl 315 (806)
+......-+ +++...|++.+.|.
T Consensus 284 ~~~~~~~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 284 AEALSIRIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHcCCCCC---HHHHHHHHHhcCCC
Confidence 644321111 45566666666543
No 150
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.84 E-value=0.00016 Score=79.38 Aligned_cols=144 Identities=22% Similarity=0.248 Sum_probs=83.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKK 235 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 235 (806)
...+.|+|++|+|||+||+++++... ....=..+++++. .++...+...+.. .... .+.+.+++ .
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~-~~~~~~~v~yi~~------~~~~~~~~~~~~~---~~~~----~~~~~~~~-~ 200 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEIL-ENNPNAKVVYVSS------EKFTNDFVNALRN---NKME----EFKEKYRS-V 200 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH-HhCCCCcEEEEEH------HHHHHHHHHHHHc---CCHH----HHHHHHHh-C
Confidence 35688999999999999999999872 1111124566643 3344445444432 1222 23333332 3
Q ss_pred EEEEEecCCCccC----cccccccCCC--CCCcEEEEecCC--------------------ceecccCChHHHHHHHHhh
Q 037138 236 FLLLLDDVWERID----LTKVGIPFPS--KNTSKVVFTTRL--------------------IFKVECLRDKEAWELFLDK 289 (806)
Q Consensus 236 ~LlvlDdv~~~~~----~~~~~~~~~~--~~~s~iivTtr~--------------------~~~l~~L~~~e~~~lf~~~ 289 (806)
-+|||||+..... .+.+...+.. ..+..+|+|+.. .+.+++.+.++-..++.+.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 4889999975321 1223222322 346678888864 4667777777777777777
Q ss_pred hCCCccCCCCChHHHHHHHHHHhCCchH
Q 037138 290 VGEETLDSHLDIPKLAHTLAKECGGLPL 317 (806)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~c~GlPl 317 (806)
+.......+ +++...|++.+.|.+-
T Consensus 281 ~~~~~~~l~---~e~l~~ia~~~~~~~r 305 (405)
T TIGR00362 281 AEEEGLELP---DEVLEFIAKNIRSNVR 305 (405)
T ss_pred HHHcCCCCC---HHHHHHHHHhcCCCHH
Confidence 643321111 5566677777766543
No 151
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.83 E-value=0.00043 Score=77.28 Aligned_cols=142 Identities=18% Similarity=0.173 Sum_probs=88.2
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcE
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKF 236 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~ 236 (806)
..+.|+|..|+|||.|++.+++... ....-..++|++. .++..++...+.. .. ...+++.+.+ -=
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~-~~~~g~~V~Yita------eef~~el~~al~~---~~----~~~f~~~y~~-~D 379 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYAR-RLYPGTRVRYVSS------EEFTNEFINSIRD---GK----GDSFRRRYRE-MD 379 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEeeH------HHHHHHHHHHHHh---cc----HHHHHHHhhc-CC
Confidence 4589999999999999999999862 1111124566653 3444444443321 11 1223333333 34
Q ss_pred EEEEecCCCcc---Cc-ccccccCCC--CCCcEEEEecCC--------------------ceecccCChHHHHHHHHhhh
Q 037138 237 LLLLDDVWERI---DL-TKVGIPFPS--KNTSKVVFTTRL--------------------IFKVECLRDKEAWELFLDKV 290 (806)
Q Consensus 237 LlvlDdv~~~~---~~-~~~~~~~~~--~~~s~iivTtr~--------------------~~~l~~L~~~e~~~lf~~~~ 290 (806)
+|||||+.... .+ +.+...+.. ..|..|||||+. .+.+++.+.+.-.+++.+++
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 78899997532 12 223333433 456789999876 77899999999999998887
Q ss_pred CCCccCCCCChHHHHHHHHHHhCCch
Q 037138 291 GEETLDSHLDIPKLAHTLAKECGGLP 316 (806)
Q Consensus 291 ~~~~~~~~~~~~~~~~~i~~~c~GlP 316 (806)
........ +++...|++.+.+..
T Consensus 460 ~~r~l~l~---~eVi~yLa~r~~rnv 482 (617)
T PRK14086 460 VQEQLNAP---PEVLEFIASRISRNI 482 (617)
T ss_pred HhcCCCCC---HHHHHHHHHhccCCH
Confidence 54432222 567777777776554
No 152
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.83 E-value=0.00012 Score=81.33 Aligned_cols=144 Identities=19% Similarity=0.203 Sum_probs=84.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKK 235 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 235 (806)
..-+.|+|++|+|||+||+.+++... ....-..+++++.. ++...+...+.. ... ..+.+.++ +.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~~------~~~~~~~~~~~~---~~~----~~~~~~~~-~~ 212 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTSE------KFTNDFVNALRN---NTM----EEFKEKYR-SV 212 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEHH------HHHHHHHHHHHc---CcH----HHHHHHHh-cC
Confidence 35689999999999999999999872 11112245566532 333444444321 112 23333443 34
Q ss_pred EEEEEecCCCccC----cccccccCCC--CCCcEEEEecCC--------------------ceecccCChHHHHHHHHhh
Q 037138 236 FLLLLDDVWERID----LTKVGIPFPS--KNTSKVVFTTRL--------------------IFKVECLRDKEAWELFLDK 289 (806)
Q Consensus 236 ~LlvlDdv~~~~~----~~~~~~~~~~--~~~s~iivTtr~--------------------~~~l~~L~~~e~~~lf~~~ 289 (806)
-+|||||+..... .+.+...+.. ..|..||+||.. .+.+++.+.++-..++.+.
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHH
Confidence 4899999964321 1233332322 345668888864 4677788888888888777
Q ss_pred hCCCccCCCCChHHHHHHHHHHhCCchH
Q 037138 290 VGEETLDSHLDIPKLAHTLAKECGGLPL 317 (806)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~i~~~c~GlPl 317 (806)
+....... -+++...|++.+.|..-
T Consensus 293 ~~~~~~~l---~~e~l~~ia~~~~~~~R 317 (450)
T PRK00149 293 AEEEGIDL---PDEVLEFIAKNITSNVR 317 (450)
T ss_pred HHHcCCCC---CHHHHHHHHcCcCCCHH
Confidence 64322111 15667777777776654
No 153
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.82 E-value=0.00026 Score=76.26 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=91.2
Q ss_pred CccccchHHHHHHHHHhc----C---------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccH
Q 037138 135 PTIVGLNSTLEKVWRCLG----E---------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQL 201 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 201 (806)
.++.|.+..++++.+.+. . ...+-|.++|++|+|||++|+.+++.. ...| +.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f---i~i~~------ 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF---IRVVG------ 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEeh------
Confidence 357899988888877652 1 245778899999999999999999986 2333 22211
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc----------C------cccccccCC---CCCCc
Q 037138 202 ERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERI----------D------LTKVGIPFP---SKNTS 262 (806)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~----------~------~~~~~~~~~---~~~~s 262 (806)
..+.... + ........+.+.......+.+|+||+++... + +..+...+. ...+.
T Consensus 213 s~l~~k~---~----ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 213 SEFVQKY---L----GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred HHHHHHh---c----chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE
Confidence 1111111 0 1111111122222334678999999986421 0 011111111 13456
Q ss_pred EEEEecCC----------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch
Q 037138 263 KVVFTTRL----------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP 316 (806)
Q Consensus 263 ~iivTtr~----------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 316 (806)
.||+||.. .+.+...+.++...+|.............++ .++++.+.|.-
T Consensus 286 ~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 286 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred EEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCCC
Confidence 78888875 5788888888888888876644332222233 44555666654
No 154
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=3e-06 Score=82.90 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=10.1
Q ss_pred CCCcccccceeccccccccc
Q 037138 732 NLKPFAKLQYLHLRALPSLK 751 (806)
Q Consensus 732 ~~~~~~~L~~L~L~~~~~L~ 751 (806)
.+.+||.|..|.+++.|-+.
T Consensus 244 ~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 244 ALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred HHcCCchhheeeccCCcccc
Confidence 44455555555555544333
No 155
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00034 Score=79.58 Aligned_cols=167 Identities=14% Similarity=0.145 Sum_probs=97.5
Q ss_pred CccccchHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHhhcCCCC-------------------CCCCeEEEEE
Q 037138 135 PTIVGLNSTLEKVWRCLGEERV-GIIGLYGMGGVGKTTLLAQINNKFLDTP-------------------NDFDVVIWVV 194 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~~F~~~~wv~ 194 (806)
.+++|.+..++.+.+.+..+++ ..+.++|+.|+||||+|+.+++...-.. .++| ++.+.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d-~~eid 94 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD-VFEID 94 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC-eeeee
Confidence 4689999999999999887765 4568999999999999999988752100 0111 11122
Q ss_pred eCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC
Q 037138 195 VSKDMQLERIQEKIGERIGLLENRSLEERASGIFK-ILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL 270 (806)
Q Consensus 195 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~ 270 (806)
......+.++ +++... +.. -..+++-++|+|++... ...+.+...+.. ...+.+|++|..
T Consensus 95 ~~s~~~v~~i-r~l~~~---------------~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~ 158 (576)
T PRK14965 95 GASNTGVDDI-RELREN---------------VKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTE 158 (576)
T ss_pred ccCccCHHHH-HHHHHH---------------HHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCC
Confidence 1111122221 111111 110 01345568999999643 234444444444 445666655543
Q ss_pred -------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch-HHHHH
Q 037138 271 -------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP-LALIT 321 (806)
Q Consensus 271 -------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~ 321 (806)
.+.+.+++.++....+...+......- -.+....|++.++|.. .|+..
T Consensus 159 ~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i---~~~al~~la~~a~G~lr~al~~ 220 (576)
T PRK14965 159 PHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI---SDAALALVARKGDGSMRDSLST 220 (576)
T ss_pred hhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 667888888888777776654332111 1456777888888755 34433
No 156
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.77 E-value=0.00016 Score=78.49 Aligned_cols=139 Identities=17% Similarity=0.168 Sum_probs=82.6
Q ss_pred ccccchHHHHHHHHHhcC-------------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH
Q 037138 136 TIVGLNSTLEKVWRCLGE-------------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE 202 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 202 (806)
++.|.+..++++.+.+.- ....-+.++|++|+|||++|+.+++.. ...| +.+..+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f---i~V~~se----- 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF---LRVVGSE----- 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE---EEEecch-----
Confidence 468999998888776631 235568899999999999999999986 3333 2222111
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCccC----------------cccccccCC---CCCCcE
Q 037138 203 RIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERID----------------LTKVGIPFP---SKNTSK 263 (806)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~----------------~~~~~~~~~---~~~~s~ 263 (806)
+... .. ..........+.....+.+.+|+||+++.... +..+...+. ...+..
T Consensus 253 -L~~k----~~---Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~ 324 (438)
T PTZ00361 253 -LIQK----YL---GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVK 324 (438)
T ss_pred -hhhh----hc---chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeE
Confidence 1111 00 11111111122223346788999999853210 001111111 133567
Q ss_pred EEEecCC----------------ceecccCChHHHHHHHHhhhCCC
Q 037138 264 VVFTTRL----------------IFKVECLRDKEAWELFLDKVGEE 293 (806)
Q Consensus 264 iivTtr~----------------~~~l~~L~~~e~~~lf~~~~~~~ 293 (806)
||+||.. .+.+...+.++..++|..++...
T Consensus 325 VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 325 VIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM 370 (438)
T ss_pred EEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 8888875 67889999999999999876543
No 157
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.77 E-value=0.00013 Score=87.12 Aligned_cols=142 Identities=22% Similarity=0.331 Sum_probs=83.6
Q ss_pred ccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCC--CCCC-CeEEEEEeCCcccHHHHHHHHHHHh
Q 037138 136 TIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDT--PNDF-DVVIWVVVSKDMQLERIQEKIGERI 212 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l 212 (806)
.++||+++++++++.|......-+.++|++|+|||++|+.++...... .... +..+|. + +...++.
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a------ 248 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA------ 248 (821)
T ss_pred CCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc------
Confidence 479999999999999987666667799999999999999998876211 1111 234442 1 2221111
Q ss_pred CCCCCCCHHHHHHHHHHHh-CCCcEEEEEecCCCcc---------CcccccccCCCCCC-cEEEEecCC-----------
Q 037138 213 GLLENRSLEERASGIFKIL-SKKKFLLLLDDVWERI---------DLTKVGIPFPSKNT-SKVVFTTRL----------- 270 (806)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~l-~~k~~LlvlDdv~~~~---------~~~~~~~~~~~~~~-s~iivTtr~----------- 270 (806)
+.....+.++....+.+.+ ..++.+|++|++.... +...+..+.. ..| -++|.+|..
T Consensus 249 g~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l-~rg~l~~IgaTt~~ey~~~ie~D~ 327 (821)
T CHL00095 249 GTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPAL-ARGELQCIGATTLDEYRKHIEKDP 327 (821)
T ss_pred cCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHH-hCCCcEEEEeCCHHHHHHHHhcCH
Confidence 1111223344444443333 3568999999995321 1111211111 223 344444432
Q ss_pred -------ceecccCChHHHHHHHHhh
Q 037138 271 -------IFKVECLRDKEAWELFLDK 289 (806)
Q Consensus 271 -------~~~l~~L~~~e~~~lf~~~ 289 (806)
.+.++..+.++...++...
T Consensus 328 aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 328 ALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHhcceEEecCCCCHHHHHHHHHHH
Confidence 6678888888888887654
No 158
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.77 E-value=0.00018 Score=79.15 Aligned_cols=147 Identities=15% Similarity=0.169 Sum_probs=83.8
Q ss_pred ccccchHHHHHHHHHhcC-------------CCceEEEEEccCCCCHHHHHHHHHhhcCCCC---CCCCeEEEEEeCCcc
Q 037138 136 TIVGLNSTLEKVWRCLGE-------------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTP---NDFDVVIWVVVSKDM 199 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~F~~~~wv~~s~~~ 199 (806)
++.|.+..++++.+.+.- ...+-+.++|++|+|||++|+++++... .. ..+....|+.+...
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~-~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA-QRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc-cccccccCCceeEEeccch-
Confidence 467899999888876521 2456689999999999999999999862 11 01223445554331
Q ss_pred cHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-hCCCcEEEEEecCCCcc---------Cc-----ccccccCCC---CCC
Q 037138 200 QLERIQEKIGERIGLLENRSLEERASGIFKI-LSKKKFLLLLDDVWERI---------DL-----TKVGIPFPS---KNT 261 (806)
Q Consensus 200 ~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~-l~~k~~LlvlDdv~~~~---------~~-----~~~~~~~~~---~~~ 261 (806)
+++.. .............+..+.. -.+++.+|+||+++... +. ..+...+.. ..+
T Consensus 261 ---eLl~k----yvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ 333 (512)
T TIGR03689 261 ---ELLNK----YVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDN 333 (512)
T ss_pred ---hhccc----ccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCc
Confidence 11100 0000000011111112221 23578999999997421 11 122222222 234
Q ss_pred cEEEEecCC----------------ceecccCChHHHHHHHHhhhC
Q 037138 262 SKVVFTTRL----------------IFKVECLRDKEAWELFLDKVG 291 (806)
Q Consensus 262 s~iivTtr~----------------~~~l~~L~~~e~~~lf~~~~~ 291 (806)
..||.||.. .+.++..+.++..++|+.+..
T Consensus 334 ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 334 VIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred eEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 456666654 578999999999999988764
No 159
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.76 E-value=0.00014 Score=85.72 Aligned_cols=142 Identities=17% Similarity=0.270 Sum_probs=83.4
Q ss_pred ccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCC--CCCC-CeEEEEEeCCcccHHHHHHHHHHHh
Q 037138 136 TIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDT--PNDF-DVVIWVVVSKDMQLERIQEKIGERI 212 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l 212 (806)
.++||+++++++++.|......-+.++|++|+|||++|+.+++..... ...+ +..+|. + +...+...
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a~----- 252 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLAG----- 252 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhhh-----
Confidence 579999999999999977666677899999999999999999976211 1111 233332 1 11111110
Q ss_pred CCCCCCCHHHHHHHHHHHh-CCCcEEEEEecCCCcc----------CcccccccCCC-CCCc-EEE-EecCC--------
Q 037138 213 GLLENRSLEERASGIFKIL-SKKKFLLLLDDVWERI----------DLTKVGIPFPS-KNTS-KVV-FTTRL-------- 270 (806)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~l-~~k~~LlvlDdv~~~~----------~~~~~~~~~~~-~~~s-~ii-vTtr~-------- 270 (806)
.....+.++..+.+.+.+ +.++.+|++|++.... +...+.. +. ..|. ++| .||+.
T Consensus 253 -~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~--~~l~~g~i~~IgaTt~~e~~~~~~~ 329 (731)
T TIGR02639 253 -TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLK--PALSSGKLRCIGSTTYEEYKNHFEK 329 (731)
T ss_pred -ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHH--HHHhCCCeEEEEecCHHHHHHHhhh
Confidence 000123334444444444 3468999999986321 1111111 22 3332 344 45541
Q ss_pred ---------ceecccCChHHHHHHHHhhh
Q 037138 271 ---------IFKVECLRDKEAWELFLDKV 290 (806)
Q Consensus 271 ---------~~~l~~L~~~e~~~lf~~~~ 290 (806)
.+.++.++.++..+++....
T Consensus 330 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 330 DRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred hHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 66778888888888877544
No 160
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=1.9e-05 Score=77.43 Aligned_cols=83 Identities=23% Similarity=0.294 Sum_probs=56.3
Q ss_pred CCCCccccccccccchhcchh--HhhccCCcccEEEccCCCccc---ccCcccCCCCCCCEEEecCCCcc--ccChhhhc
Q 037138 477 PTCPHLLSLFPNINRLKTIAR--RFFDFMPSLTVLNLSNNGFLT---KLRPGISKLVSLQYLNLSKTSIR--ELPKELKA 549 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~~~~~~---~lp~~i~~l~~L~~L~Ls~n~l~--~lp~~i~~ 549 (806)
..+..++.|+|.+|.+.+... ..+.+|+.|++|+|+.|+... .+| ..+.+|++|-|.++.+. .+...+..
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhhc
Confidence 557778888888887765542 346778888888888874332 233 34567888888777554 55556677
Q ss_pred CCCCcEEecCCCc
Q 037138 550 LVNLKYLNLEHSR 562 (806)
Q Consensus 550 L~~L~~L~L~~~~ 562 (806)
++.++.|.++.|.
T Consensus 145 lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 145 LPKVTELHMSDNS 157 (418)
T ss_pred chhhhhhhhccch
Confidence 7777777777773
No 161
>PRK08116 hypothetical protein; Validated
Probab=97.72 E-value=5.8e-05 Score=77.09 Aligned_cols=100 Identities=27% Similarity=0.288 Sum_probs=60.5
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcE
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKF 236 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~ 236 (806)
..+.++|.+|+|||.||.++++... ..-..+++++ ..+++..+..........+. ..+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~~~~~~----~~~~~~l~~~d- 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSSGKEDE----NEIIRSLVNAD- 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhccccccH----HHHHHHhcCCC-
Confidence 4588999999999999999999972 2234466665 34455555544432211222 22334444444
Q ss_pred EEEEecCCC--ccCcc--cccccCCC--CCCcEEEEecCC
Q 037138 237 LLLLDDVWE--RIDLT--KVGIPFPS--KNTSKVVFTTRL 270 (806)
Q Consensus 237 LlvlDdv~~--~~~~~--~~~~~~~~--~~~s~iivTtr~ 270 (806)
||||||+.. ..+|. .+...+.. ..+..+||||..
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 899999943 23333 23333333 467789999983
No 162
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=0.0016 Score=68.04 Aligned_cols=179 Identities=17% Similarity=0.188 Sum_probs=104.1
Q ss_pred CccccchHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHhhcCCC------------CCCCCeEEEEEeCCcccH
Q 037138 135 PTIVGLNSTLEKVWRCLGEERV-GIIGLYGMGGVGKTTLLAQINNKFLDT------------PNDFDVVIWVVVSKDMQL 201 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~------------~~~F~~~~wv~~s~~~~~ 201 (806)
..++|.+..++.+.+.+..+++ ...-++|+.|+||+++|..++....-. .....-..|+.-....+-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 3579999999999999987764 799999999999999999887765211 011112234321100000
Q ss_pred HHHHHHHHHHhCCCC----CCCHHHHHHHHHHHh-----CCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecC
Q 037138 202 ERIQEKIGERIGLLE----NRSLEERASGIFKIL-----SKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTR 269 (806)
Q Consensus 202 ~~~~~~i~~~l~~~~----~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr 269 (806)
..+-.+-+...+... .-..++ .+.+.+.+ .+.+-++|+|++... .....+...+.. . .+.+|++|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred cccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEEC
Confidence 000001111111000 111122 23344443 356779999998754 234444444444 3 445555554
Q ss_pred C-------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHH
Q 037138 270 L-------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALIT 321 (806)
Q Consensus 270 ~-------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 321 (806)
+ .+.+.++++++..+.+.+...... .......++..++|.|..+..
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHH
Confidence 4 889999999999999987643211 111136788999999966544
No 163
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.0011 Score=75.21 Aligned_cols=159 Identities=13% Similarity=0.113 Sum_probs=95.1
Q ss_pred CccccchHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHhhcCCC-------------------CCCCCeEEEEE
Q 037138 135 PTIVGLNSTLEKVWRCLGEERV-GIIGLYGMGGVGKTTLLAQINNKFLDT-------------------PNDFDVVIWVV 194 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~~F~~~~wv~ 194 (806)
..++|.+..++.+.+++..+.+ ..+-++|+.|+||||+|+.+.....-. ..++| ++.+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d-v~eid 94 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD-VIEID 94 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC-eEEee
Confidence 4689999999999999977654 456789999999999999998765100 01122 12222
Q ss_pred eCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-----hCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEE
Q 037138 195 VSKDMQLERIQEKIGERIGLLENRSLEERASGIFKI-----LSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVF 266 (806)
Q Consensus 195 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~-----l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iiv 266 (806)
.+.... .++ ...+.+. ..+++-++|+|++... ..+..+...+.. .....+|+
T Consensus 95 aas~~~-------------------vd~-ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIl 154 (559)
T PRK05563 95 AASNNG-------------------VDE-IRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFIL 154 (559)
T ss_pred ccccCC-------------------HHH-HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEE
Confidence 211111 111 1112221 2456678999999743 234444444444 34455555
Q ss_pred ecCC-------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchH
Q 037138 267 TTRL-------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPL 317 (806)
Q Consensus 267 Ttr~-------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 317 (806)
+|.. .+.+.+++.++....+...+........ .+....|++.++|-+.
T Consensus 155 att~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R 215 (559)
T PRK05563 155 ATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMR 215 (559)
T ss_pred EeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHH
Confidence 4433 5778888888888877776643321111 4556778888887664
No 164
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.68 E-value=2.4e-05 Score=89.84 Aligned_cols=84 Identities=24% Similarity=0.368 Sum_probs=43.2
Q ss_pred CCCCccccccccccchhcc-hhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccC--hhhhcCCCC
Q 037138 477 PTCPHLLSLFPNINRLKTI-ARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELP--KELKALVNL 553 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp--~~i~~L~~L 553 (806)
..+|.|++|.+.+-.+..- ....+.++++|+.||+|++ .+..+ ..+++|++|+.|.+.+=.+..-+ ..+.+|++|
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 3456666666655433111 1223455666666666666 34444 45566666666665554444211 234556666
Q ss_pred cEEecCCCc
Q 037138 554 KYLNLEHSR 562 (806)
Q Consensus 554 ~~L~L~~~~ 562 (806)
++||+|...
T Consensus 223 ~vLDIS~~~ 231 (699)
T KOG3665|consen 223 RVLDISRDK 231 (699)
T ss_pred Ceeeccccc
Confidence 666666543
No 165
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.67 E-value=0.00076 Score=65.94 Aligned_cols=46 Identities=22% Similarity=0.417 Sum_probs=38.6
Q ss_pred CccccchHHHHHHHHH----hcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRC----LGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~----l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|.|..++.+++- +......-+-+||..|+|||++++++.+..
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 4689999999888764 344567778899999999999999999987
No 166
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.67 E-value=0.00021 Score=82.99 Aligned_cols=144 Identities=19% Similarity=0.274 Sum_probs=81.6
Q ss_pred ccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCC---CCeEEEEEeCCcccHHHHHHHHHHHh
Q 037138 136 TIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPND---FDVVIWVVVSKDMQLERIQEKIGERI 212 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~---F~~~~wv~~s~~~~~~~~~~~i~~~l 212 (806)
.++||+++++++++.|......-+.++|++|+|||++|+.++.......-. .+..+|.. +...++.
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~lla------ 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSLLA------ 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHHhc------
Confidence 479999999999999977655566789999999999999999875211111 23444421 1111110
Q ss_pred CCCCCCCHHHHHHHHHHHh-CCCcEEEEEecCCCcc----------CcccccccCCCCCCcEEEEecCC-----------
Q 037138 213 GLLENRSLEERASGIFKIL-SKKKFLLLLDDVWERI----------DLTKVGIPFPSKNTSKVVFTTRL----------- 270 (806)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~l-~~k~~LlvlDdv~~~~----------~~~~~~~~~~~~~~s~iivTtr~----------- 270 (806)
+.....+.+...+.+...+ +..+.+|++|++.... +...+..++.....-++|.+|..
T Consensus 256 G~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~D~ 335 (758)
T PRK11034 256 GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDR 335 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhccH
Confidence 1111223333434443333 3567899999996421 11111122211222344444432
Q ss_pred -------ceecccCChHHHHHHHHhhh
Q 037138 271 -------IFKVECLRDKEAWELFLDKV 290 (806)
Q Consensus 271 -------~~~l~~L~~~e~~~lf~~~~ 290 (806)
.+.++..+.++...++....
T Consensus 336 AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 336 ALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 56777777777777776543
No 167
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.65 E-value=0.00044 Score=74.92 Aligned_cols=154 Identities=19% Similarity=0.185 Sum_probs=92.7
Q ss_pred cchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCC
Q 037138 139 GLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENR 218 (806)
Q Consensus 139 gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 218 (806)
.|..-+.++.+.+..... ++.|.|+-++||||+++.+..... +. .+++..-+......-+.+.
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~---~~---~iy~~~~d~~~~~~~l~d~---------- 83 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLL---EE---IIYINFDDLRLDRIELLDL---------- 83 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCC---cc---eEEEEecchhcchhhHHHH----------
Confidence 344455566665544444 999999999999999987777652 22 5666543321111111111
Q ss_pred CHHHHHHHHHHHhCCCcEEEEEecCCCccCcccccccCCC-CCCcEEEEecCC-----------------ceecccCChH
Q 037138 219 SLEERASGIFKILSKKKFLLLLDDVWERIDLTKVGIPFPS-KNTSKVVFTTRL-----------------IFKVECLRDK 280 (806)
Q Consensus 219 ~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~~~~~~~~~~~-~~~s~iivTtr~-----------------~~~l~~L~~~ 280 (806)
...+...-..++..++||.|....+|+.....+.+ ++. +|++|+-+ .+.+.|||..
T Consensus 84 -----~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~ 157 (398)
T COG1373 84 -----LRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFR 157 (398)
T ss_pred -----HHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHH
Confidence 11112211227889999999999999987666666 555 88888866 7899999999
Q ss_pred HHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHh
Q 037138 281 EAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITT 322 (806)
Q Consensus 281 e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 322 (806)
|...+....+ . ....+..-.---..||.|-++..-
T Consensus 158 Efl~~~~~~~-----~--~~~~~~~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 158 EFLKLKGEEI-----E--PSKLELLFEKYLETGGFPESVKAD 192 (398)
T ss_pred HHHhhccccc-----c--hhHHHHHHHHHHHhCCCcHHHhCc
Confidence 8876543000 0 000111222233468888776553
No 168
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.0014 Score=68.82 Aligned_cols=144 Identities=12% Similarity=0.136 Sum_probs=85.1
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCC-------------------CCCCeEEEEEeC---CcccHHHHHHHHHHHhC
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTP-------------------NDFDVVIWVVVS---KDMQLERIQEKIGERIG 213 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~~F~~~~wv~~s---~~~~~~~~~~~i~~~l~ 213 (806)
...+-++|+.|+||||+|+.++....-.. .|-| ..|+.-. +...++++- ++.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~~~~i~id~iR-~l~~--- 96 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEADKTIKVDQVR-ELVS--- 96 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCCCCCCCHHHHH-HHHH---
Confidence 45688999999999999999988762100 1112 2222211 111221111 1111
Q ss_pred CCCCCCHHHHHHHHHH-HhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-------------ceeccc
Q 037138 214 LLENRSLEERASGIFK-ILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL-------------IFKVEC 276 (806)
Q Consensus 214 ~~~~~~~~~~~~~l~~-~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~-------------~~~l~~ 276 (806)
.+.. -..+++-++|+|+++.. .....+...+.. ..++.+|+||.+ .+.+.+
T Consensus 97 ------------~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~ 164 (328)
T PRK05707 97 ------------FVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPL 164 (328)
T ss_pred ------------HHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCC
Confidence 1111 11244555678999753 334445444544 556777777766 789999
Q ss_pred CChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhh
Q 037138 277 LRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITTG 323 (806)
Q Consensus 277 L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g 323 (806)
++.+++.+.+....... ..+.+..++..++|.|..+..+.
T Consensus 165 ~~~~~~~~~L~~~~~~~-------~~~~~~~~l~la~Gsp~~A~~l~ 204 (328)
T PRK05707 165 PSNEESLQWLQQALPES-------DERERIELLTLAGGSPLRALQLH 204 (328)
T ss_pred cCHHHHHHHHHHhcccC-------ChHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999887654211 13446678899999997655443
No 169
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.64 E-value=0.0026 Score=61.94 Aligned_cols=166 Identities=16% Similarity=0.213 Sum_probs=103.4
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeC-CcccHHHHHHHHHHHhCCCCCCCHHHH----HHHH
Q 037138 153 EERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVS-KDMQLERIQEKIGERIGLLENRSLEER----ASGI 227 (806)
Q Consensus 153 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~~~----~~~l 227 (806)
.++-+++.++|.-|.|||++++++.... . =+.++-|.+. +..+...+...|+.++..+........ ...+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~-~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L 122 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASL-N----EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDREL 122 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhc-C----CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHH
Confidence 3567799999999999999999555544 1 1222224433 345777888889888887554444333 3334
Q ss_pred HHHh-CCCc-EEEEEecCCCc--cCcccccccCCC-CCCc---EEEEecCC-------------------c-eecccCCh
Q 037138 228 FKIL-SKKK-FLLLLDDVWER--IDLTKVGIPFPS-KNTS---KVVFTTRL-------------------I-FKVECLRD 279 (806)
Q Consensus 228 ~~~l-~~k~-~LlvlDdv~~~--~~~~~~~~~~~~-~~~s---~iivTtr~-------------------~-~~l~~L~~ 279 (806)
.... +++| ..++.||.... ..++.++..... ..++ +|+..-.. . |.+.|++.
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 4433 5777 99999998643 233332221111 1111 12222211 3 89999999
Q ss_pred HHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhh
Q 037138 280 KEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITTG 323 (806)
Q Consensus 280 ~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g 323 (806)
++...++...........+---.+....|.....|.|.+|..++
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 99999888876443211111225667889999999999998877
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.64 E-value=0.00023 Score=65.22 Aligned_cols=89 Identities=22% Similarity=0.108 Sum_probs=49.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHhCCC
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLL-ENRSLEERASGIFKILSKK 234 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~l~~~l~~k 234 (806)
...+.|+|++|+||||+|+.++.... .....++++..+........... ....... ...........+....+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG---PPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC---CCCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 35789999999999999999999872 22234566654443222111111 0011111 1222333333444444443
Q ss_pred -cEEEEEecCCCccC
Q 037138 235 -KFLLLLDDVWERID 248 (806)
Q Consensus 235 -~~LlvlDdv~~~~~ 248 (806)
..++++|++.....
T Consensus 78 ~~~viiiDei~~~~~ 92 (148)
T smart00382 78 KPDVLILDEITSLLD 92 (148)
T ss_pred CCCEEEEECCcccCC
Confidence 48999999987543
No 171
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.63 E-value=0.00061 Score=81.25 Aligned_cols=45 Identities=20% Similarity=0.386 Sum_probs=40.8
Q ss_pred ccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 136 TIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.++||+.+++++++.|......-+.++|++|+|||++|+.++...
T Consensus 179 ~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999987766677799999999999999999986
No 172
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.56 E-value=0.0012 Score=74.45 Aligned_cols=158 Identities=13% Similarity=0.115 Sum_probs=86.5
Q ss_pred CccccchHHHHHHHHHhc---C---------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH
Q 037138 135 PTIVGLNSTLEKVWRCLG---E---------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE 202 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 202 (806)
.+++|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++.. ...| +.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eeccH----H
Confidence 357888877766655442 1 234468899999999999999999876 2222 22221 1
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc----C--------c----ccccccCC---CCCCcE
Q 037138 203 RIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERI----D--------L----TKVGIPFP---SKNTSK 263 (806)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~----~--------~----~~~~~~~~---~~~~s~ 263 (806)
++.... . ..........+.......+.+|+|||++... . . ..+...+. ...+-.
T Consensus 123 ~~~~~~----~---g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~ 195 (495)
T TIGR01241 123 DFVEMF----V---GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVI 195 (495)
T ss_pred HHHHHH----h---cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeE
Confidence 111111 0 1111222222333334567899999996421 0 0 01111111 123445
Q ss_pred EEEecCC----------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCc
Q 037138 264 VVFTTRL----------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGL 315 (806)
Q Consensus 264 iivTtr~----------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 315 (806)
||.||.. .+.++..+.++-.++|+..+........ .....+++.+.|.
T Consensus 196 vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~----~~l~~la~~t~G~ 259 (495)
T TIGR01241 196 VIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD----VDLKAVARRTPGF 259 (495)
T ss_pred EEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc----hhHHHHHHhCCCC
Confidence 6666654 5677888888888888877643321111 1234677777764
No 173
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.54 E-value=2e-05 Score=68.39 Aligned_cols=99 Identities=24% Similarity=0.294 Sum_probs=83.3
Q ss_pred ehHHHHHHHHHHHhhhhhcccceEEEEEeeecccccccCCC--CCCCccccccccccchhcchhHhhccCCcccEEEccC
Q 037138 436 MHDAIRDMTLWIACEVEKEKENVLRRRISLMRNKIEKLSDT--PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSN 513 (806)
Q Consensus 436 mHdlv~d~a~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 513 (806)
|||.++.+.. ......+++++|.+.++|.. ..++.+++|++.+|.+..+|.. +..++.||.|+++.
T Consensus 42 i~davy~l~~-----------~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 42 IADAVYMLSK-----------GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRF 109 (177)
T ss_pred HHHHHHHHhC-----------CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhccccc
Confidence 6777666542 33446788999999988755 6677999999999999999988 99999999999999
Q ss_pred CCcccccCcccCCCCCCCEEEecCCCccccChhh
Q 037138 514 NGFLTKLRPGISKLVSLQYLNLSKTSIRELPKEL 547 (806)
Q Consensus 514 ~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i 547 (806)
| .+...|.-|..|.+|-+|+..+|.+.++|-.+
T Consensus 110 N-~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 110 N-PLNAEPRVIAPLIKLDMLDSPENARAEIDVDL 142 (177)
T ss_pred C-ccccchHHHHHHHhHHHhcCCCCccccCcHHH
Confidence 9 67778888888999999999999988888663
No 174
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.54 E-value=0.00031 Score=84.03 Aligned_cols=141 Identities=13% Similarity=0.191 Sum_probs=82.8
Q ss_pred ccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCC----CCeEEE-EEeCCcccHHHHHHHHHH
Q 037138 136 TIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPND----FDVVIW-VVVSKDMQLERIQEKIGE 210 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~----F~~~~w-v~~s~~~~~~~~~~~i~~ 210 (806)
.++||+.+++++++.|......-+.++|++|+|||++|+.++..... ... ....+| +.+ ..+..
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~~p~~l~~~~~~~l~~------~~l~a---- 242 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN-GDVPESLKNKRLLALDM------GALIA---- 242 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc-cCCchhhcCCeEEEeeH------HHHhh----
Confidence 47999999999999997766667778999999999999999987621 111 122233 221 11110
Q ss_pred HhCCCCCCCHHHHHHHHHHHhC--CCcEEEEEecCCCccC---------cccccccCCCCCC-cEEEEecC-C-------
Q 037138 211 RIGLLENRSLEERASGIFKILS--KKKFLLLLDDVWERID---------LTKVGIPFPSKNT-SKVVFTTR-L------- 270 (806)
Q Consensus 211 ~l~~~~~~~~~~~~~~l~~~l~--~k~~LlvlDdv~~~~~---------~~~~~~~~~~~~~-s~iivTtr-~------- 270 (806)
+.....+.+.....+...+. +++.+|++|++..... ...+..+.. ..| -++|.+|. .
T Consensus 243 --~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l-~~g~i~~IgaTt~~e~r~~~~ 319 (852)
T TIGR03346 243 --GAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL-ARGELHCIGATTLDEYRKYIE 319 (852)
T ss_pred --cchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh-hcCceEEEEeCcHHHHHHHhh
Confidence 00011223333333333332 4689999999974321 111211111 233 34444443 2
Q ss_pred ----------ceecccCChHHHHHHHHhhh
Q 037138 271 ----------IFKVECLRDKEAWELFLDKV 290 (806)
Q Consensus 271 ----------~~~l~~L~~~e~~~lf~~~~ 290 (806)
.+.++..+.++...++....
T Consensus 320 ~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 320 KDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred cCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 57788888888888887654
No 175
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.50 E-value=5.4e-05 Score=87.04 Aligned_cols=137 Identities=19% Similarity=0.195 Sum_probs=76.4
Q ss_pred Cccccccccccc--hhcchhHhhccCCcccEEEccCCCccc-ccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEE
Q 037138 480 PHLLSLFPNINR--LKTIARRFFDFMPSLTVLNLSNNGFLT-KLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYL 556 (806)
Q Consensus 480 ~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~Ls~~~~~~-~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L 556 (806)
.+|+.|++++.. ..+.+...-..+|+|+.|.+++-.... .+..-..++++|..||+|+++++.+ .++++|+||++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 567777777652 123344444557777777777753322 2333445667777777777777776 567777777777
Q ss_pred ecCCCccccc-cccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecch
Q 037138 557 NLEHSRYLHT-IPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSF 625 (806)
Q Consensus 557 ~L~~~~~l~~-lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 625 (806)
.+.+=.+... --.. +-+|++|+.||+|......... -.....+--..|++|+.|+++++.+
T Consensus 201 ~mrnLe~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~-------ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 201 SMRNLEFESYQDLID-LFNLKKLRVLDISRDKNNDDTK-------IIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hccCCCCCchhhHHH-HhcccCCCeeeccccccccchH-------HHHHHHHhcccCccccEEecCCcch
Confidence 7765443221 0012 4567777777777654433210 0000112223467777777775544
No 176
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.48 E-value=0.00016 Score=76.55 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=46.8
Q ss_pred EEEeeecccccccCCCCCCCcccccccccc-chhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCC
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNIN-RLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTS 539 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~ 539 (806)
+++.+..+.+..+|..+ ++|++|.+++| .++.+|.. + .++|++|++++|..+..+|. +|+.|+++++.
T Consensus 55 ~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~ 123 (426)
T PRK15386 55 GRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPE------SVRSLEIKGSA 123 (426)
T ss_pred CEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccc------ccceEEeCCCC
Confidence 56777777777776332 35888888765 45444432 2 25788888888755556664 46666666654
Q ss_pred ---ccccChhh
Q 037138 540 ---IRELPKEL 547 (806)
Q Consensus 540 ---l~~lp~~i 547 (806)
+..+|.++
T Consensus 124 ~~~L~~LPssL 134 (426)
T PRK15386 124 TDSIKNVPNGL 134 (426)
T ss_pred CcccccCcchH
Confidence 44566544
No 177
>PRK08118 topology modulation protein; Reviewed
Probab=97.48 E-value=7.2e-05 Score=70.61 Aligned_cols=36 Identities=36% Similarity=0.574 Sum_probs=29.1
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEE
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIW 192 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~w 192 (806)
..|.|+|++|+||||||+.+++...-..-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987323356777775
No 178
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.46 E-value=0.0028 Score=66.44 Aligned_cols=99 Identities=23% Similarity=0.294 Sum_probs=55.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKK 235 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 235 (806)
...+.++|.+|+|||.||.++++... ... ..++++++. +++..+...-. ....+... . .+.+. .-
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~--~~g-~~V~y~t~~------~l~~~l~~~~~-~~~~~~~~---~-~~~l~-~~ 247 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL--DRG-KSVIYRTAD------ELIEILREIRF-NNDKELEE---V-YDLLI-NC 247 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH--HCC-CeEEEEEHH------HHHHHHHHHHh-ccchhHHH---H-HHHhc-cC
Confidence 37799999999999999999999872 222 356777543 33333322111 11111111 1 22232 22
Q ss_pred EEEEEecCCCc--cCc--ccccccCCC--CCCcEEEEecC
Q 037138 236 FLLLLDDVWER--IDL--TKVGIPFPS--KNTSKVVFTTR 269 (806)
Q Consensus 236 ~LlvlDdv~~~--~~~--~~~~~~~~~--~~~s~iivTtr 269 (806)
=||||||+... ..| ..+...+.. ..+..+||||.
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSN 287 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTN 287 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 48999999543 222 233333333 44667899887
No 179
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.46 E-value=0.00012 Score=68.19 Aligned_cols=106 Identities=23% Similarity=0.234 Sum_probs=63.8
Q ss_pred CccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccC--hhhhcCCCCcEEe
Q 037138 480 PHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELP--KELKALVNLKYLN 557 (806)
Q Consensus 480 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp--~~i~~L~~L~~L~ 557 (806)
.+...++++.|.+..++. |..++.|..|.|++|.+...-|.--..+++|..|.|.+|+|.++- ..+..++.|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 345566777776655544 667777777777777444433433334566777777777766543 2355667777777
Q ss_pred cCCCccccc--cccccccCCCCCcEEEeeccc
Q 037138 558 LEHSRYLHT--IPRQLICSFSMLHVLRMVNCD 587 (806)
Q Consensus 558 L~~~~~l~~--lp~~~~~~l~~L~~L~l~~~~ 587 (806)
+-+|..... --..++.++++|++||..+..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 776652111 112346778888888876543
No 180
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.45 E-value=0.0033 Score=69.56 Aligned_cols=132 Identities=14% Similarity=0.129 Sum_probs=87.3
Q ss_pred CccccchHHHHHHHHHhc----C-CCceEEEEEccCCCCHHHHHHHHHhhcC-----CCCCCCCeEEEEEeCCcccHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLG----E-ERVGIIGLYGMGGVGKTTLLAQINNKFL-----DTPNDFDVVIWVVVSKDMQLERI 204 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~----~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~-----~~~~~F~~~~wv~~s~~~~~~~~ 204 (806)
..+-+||.+..+|..++. + +.-+.+-|.|.+|+|||..+..|.+... .....|+ .+.|+.-.-....++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 346789999999988874 2 3445999999999999999999998542 1123443 344554445568999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHhC-----CCcEEEEEecCCCccC--cccccccCCC--CCCcEEEEec
Q 037138 205 QEKIGERIGLLENRSLEERASGIFKILS-----KKKFLLLLDDVWERID--LTKVGIPFPS--KNTSKVVFTT 268 (806)
Q Consensus 205 ~~~i~~~l~~~~~~~~~~~~~~l~~~l~-----~k~~LlvlDdv~~~~~--~~~~~~~~~~--~~~s~iivTt 268 (806)
+..|...+.... .......+.+..++. .+..+|++|+++.... .+-+...+.+ .++||++|-+
T Consensus 475 Y~~I~~~lsg~~-~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 475 YEKIWEALSGER-VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHhcccCc-ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 999999997653 233333444555443 4678999999865322 2223444444 6778766543
No 181
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0027 Score=67.18 Aligned_cols=133 Identities=8% Similarity=0.089 Sum_probs=82.0
Q ss_pred cccc-chHHHHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHhhcCCCC-------------------CCCCeEEEEE
Q 037138 136 TIVG-LNSTLEKVWRCLGEERV-GIIGLYGMGGVGKTTLLAQINNKFLDTP-------------------NDFDVVIWVV 194 (806)
Q Consensus 136 ~~~g-r~~~~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~~F~~~~wv~ 194 (806)
.++| -+..++.+.+.+..+++ ...-++|+.|+||||+|+.+.+...-.. .|.|......
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~ 85 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP 85 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc
Confidence 4567 77788888888876654 4568999999999999999987752100 1222221111
Q ss_pred eCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-----hCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEE
Q 037138 195 VSKDMQLERIQEKIGERIGLLENRSLEERASGIFKI-----LSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVF 266 (806)
Q Consensus 195 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~-----l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iiv 266 (806)
.+.... .++..+ +.+. ..+.+-++|+|++... ...+.+...+.. ..++.+|+
T Consensus 86 ~~~~i~-------------------id~ir~-l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il 145 (329)
T PRK08058 86 DGQSIK-------------------KDQIRY-LKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAIL 145 (329)
T ss_pred ccccCC-------------------HHHHHH-HHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEE
Confidence 111111 111111 1111 2355668999998653 234445555555 56777777
Q ss_pred ecCC-------------ceecccCChHHHHHHHHh
Q 037138 267 TTRL-------------IFKVECLRDKEAWELFLD 288 (806)
Q Consensus 267 Ttr~-------------~~~l~~L~~~e~~~lf~~ 288 (806)
+|.+ .+++.+++.++..+.+..
T Consensus 146 ~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 146 LTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred EeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 7755 789999999999888865
No 182
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.0044 Score=64.52 Aligned_cols=162 Identities=14% Similarity=0.121 Sum_probs=94.0
Q ss_pred hHHHHHHHHHhcCCCce-EEEEEccCCCCHHHHHHHHHhhcCCC----------------CCCCCeEEEEEeCCcccHHH
Q 037138 141 NSTLEKVWRCLGEERVG-IIGLYGMGGVGKTTLLAQINNKFLDT----------------PNDFDVVIWVVVSKDMQLER 203 (806)
Q Consensus 141 ~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~----------------~~~F~~~~wv~~s~~~~~~~ 203 (806)
+...+.+...+..+++. .+-++|+.|+||+++|..++....-. ..|-| ..||.......-.+
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~~~k 88 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRTGDK 88 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCccccc
Confidence 34566777777666554 68899999999999999988765210 01111 22221110000000
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHh-----CCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-----
Q 037138 204 IQEKIGERIGLLENRSLEERASGIFKIL-----SKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL----- 270 (806)
Q Consensus 204 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~----- 270 (806)
....-..++ .+.+.+.+ .+++-++|+|+++.. ..-..+...+.. ..++.+|++|.+
T Consensus 89 ----------~~~~I~idq-IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lL 157 (319)
T PRK08769 89 ----------LRTEIVIEQ-VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLP 157 (319)
T ss_pred ----------ccccccHHH-HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCc
Confidence 000001111 22233322 356679999999754 233344444444 556777777665
Q ss_pred --------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhh
Q 037138 271 --------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITTG 323 (806)
Q Consensus 271 --------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g 323 (806)
.+.+.+++.+++.+.+... +.. ...+..++..++|.|+.+..+.
T Consensus 158 pTIrSRCq~i~~~~~~~~~~~~~L~~~-~~~--------~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 158 ATIRSRCQRLEFKLPPAHEALAWLLAQ-GVS--------ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hHHHhhheEeeCCCcCHHHHHHHHHHc-CCC--------hHHHHHHHHHcCCCHHHHHHHh
Confidence 7899999999999888653 111 2336778999999998765544
No 183
>PRK10536 hypothetical protein; Provisional
Probab=97.41 E-value=0.0018 Score=64.22 Aligned_cols=130 Identities=15% Similarity=0.172 Sum_probs=73.2
Q ss_pred ccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEE--e--CCc-----ccHH----
Q 037138 136 TIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVV--V--SKD-----MQLE---- 202 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~--~--s~~-----~~~~---- 202 (806)
.+.++......++.++.+. .+|.+.|++|+|||+||.++..+... .+.|+.++-.. + ++. -+..
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~-~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~ 132 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALI-HKDVDRIIVTRPVLQADEDLGFLPGDIAEKFA 132 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHh-cCCeeEEEEeCCCCCchhhhCcCCCCHHHHHH
Confidence 3567888888888888664 49999999999999999999886411 23455443332 1 110 0111
Q ss_pred HHHHHHHHHhCCCCC-CCHHHHHH----H----HHHHhCCCcE---EEEEecCCCccCcccccccCCC-CCCcEEEEecC
Q 037138 203 RIQEKIGERIGLLEN-RSLEERAS----G----IFKILSKKKF---LLLLDDVWERIDLTKVGIPFPS-KNTSKVVFTTR 269 (806)
Q Consensus 203 ~~~~~i~~~l~~~~~-~~~~~~~~----~----l~~~l~~k~~---LlvlDdv~~~~~~~~~~~~~~~-~~~s~iivTtr 269 (806)
-.++.+...+..-.. ...+.... . =..+++|+.+ +||+|++.+... ..+...+.. +.+|++|+|--
T Consensus 133 p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 133 PYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLTRLGENVTVIVNGD 211 (262)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHhhcCCCCEEEEeCC
Confidence 112222222211000 01111100 0 0134566655 999999976433 444444445 78999998865
No 184
>PHA00729 NTP-binding motif containing protein
Probab=97.40 E-value=0.00072 Score=65.89 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=29.1
Q ss_pred HHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 146 KVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 146 ~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
++++.+...+...|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555666677789999999999999999999875
No 185
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.40 E-value=0.00022 Score=66.40 Aligned_cols=107 Identities=24% Similarity=0.287 Sum_probs=75.6
Q ss_pred CCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhh-cCCCCcEEecCCCcc--ccccccccccCCCCCc
Q 037138 503 MPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELK-ALVNLKYLNLEHSRY--LHTIPRQLICSFSMLH 579 (806)
Q Consensus 503 l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~-~L~~L~~L~L~~~~~--l~~lp~~~~~~l~~L~ 579 (806)
......+||++| .+..++ .+..++.|.+|.|.+|.|+.+-+.+. .+++|..|.+.+|.+ ++.+.+ +..+++|+
T Consensus 41 ~d~~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p--La~~p~L~ 116 (233)
T KOG1644|consen 41 LDQFDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP--LASCPKLE 116 (233)
T ss_pred ccccceeccccc-chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch--hccCCccc
Confidence 346677889988 455554 56778889999999999987766654 467799999988863 233333 56788999
Q ss_pred EEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEec
Q 037138 580 VLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALK 623 (806)
Q Consensus 580 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 623 (806)
+|.+-+|.....-. .-...+..+++|+.|++..-
T Consensus 117 ~Ltll~Npv~~k~~----------YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKN----------YRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeeecCCchhcccC----------ceeEEEEecCcceEeehhhh
Confidence 99888887764311 11235677888888887754
No 186
>PRK12377 putative replication protein; Provisional
Probab=97.38 E-value=0.00055 Score=68.59 Aligned_cols=99 Identities=24% Similarity=0.217 Sum_probs=57.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKK 234 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 234 (806)
+...+.++|.+|+|||+||.++++... .....++++++. +++..+-..... ..... .+.+.+ .+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~------~l~~~l~~~~~~--~~~~~----~~l~~l-~~ 163 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVP------DVMSRLHESYDN--GQSGE----KFLQEL-CK 163 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHH------HHHHHHHHHHhc--cchHH----HHHHHh-cC
Confidence 346789999999999999999999872 233346676543 444444333211 11111 222223 35
Q ss_pred cEEEEEecCCCc--cCcc--cccccCCC--CCCcEEEEecC
Q 037138 235 KFLLLLDDVWER--IDLT--KVGIPFPS--KNTSKVVFTTR 269 (806)
Q Consensus 235 ~~LlvlDdv~~~--~~~~--~~~~~~~~--~~~s~iivTtr 269 (806)
--||||||+... ..|. .+...+.. .+.-.+||||.
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 569999999532 2232 23333333 34456788877
No 187
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.36 E-value=0.013 Score=69.82 Aligned_cols=46 Identities=30% Similarity=0.380 Sum_probs=38.0
Q ss_pred CccccchHHHHHHHHHhcC------CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGE------ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|.+..++++.+++.. ....++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999998886631 234589999999999999999999987
No 188
>CHL00176 ftsH cell division protein; Validated
Probab=97.36 E-value=0.0018 Score=73.96 Aligned_cols=157 Identities=14% Similarity=0.126 Sum_probs=86.3
Q ss_pred CccccchHHHHHHHHHh---cCC---------CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH
Q 037138 135 PTIVGLNSTLEKVWRCL---GEE---------RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE 202 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l---~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 202 (806)
.+++|.++.++++.+.+ .+. ..+-|.++|++|+|||++|+.+++.. ... ++.++. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~----s 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISG----S 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccH----H
Confidence 45788887776665543 321 24568999999999999999999875 112 233221 1
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc------------C----cccccccCCC---CCCcE
Q 037138 203 RIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERI------------D----LTKVGIPFPS---KNTSK 263 (806)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~------------~----~~~~~~~~~~---~~~s~ 263 (806)
++.... . ..........+.......+.+|++||++... . +..+...+.. ..+-.
T Consensus 251 ~f~~~~---~----g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~Vi 323 (638)
T CHL00176 251 EFVEMF---V----GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVI 323 (638)
T ss_pred HHHHHh---h----hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCee
Confidence 111100 0 0111122223334446788999999996321 0 1112111111 33456
Q ss_pred EEEecCC----------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCC
Q 037138 264 VVFTTRL----------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGG 314 (806)
Q Consensus 264 iivTtr~----------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G 314 (806)
||.||.. .+.+...+.++-.++++.++...... .......+++.+.|
T Consensus 324 VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~----~d~~l~~lA~~t~G 386 (638)
T CHL00176 324 VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS----PDVSLELIARRTPG 386 (638)
T ss_pred EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc----hhHHHHHHHhcCCC
Confidence 6666654 46677777888888887776442211 12234566666666
No 189
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.35 E-value=0.00043 Score=65.67 Aligned_cols=97 Identities=21% Similarity=0.230 Sum_probs=66.6
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCC
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGL 214 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 214 (806)
.++||-++.++.+.-...+++.+-+.|.||+|+||||-+..+++.. -...+-+.+.-.+.|+...+.-+-..|-. +
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L-LG~~~ke~vLELNASdeRGIDvVRn~IK~-F-- 102 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL-LGDSYKEAVLELNASDERGIDVVRNKIKM-F-- 102 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH-hChhhhhHhhhccCccccccHHHHHHHHH-H--
Confidence 3589999999999888889999999999999999999999998887 22334455666666665444333222210 0
Q ss_pred CCCCCHHHHHHHHHHH--h-CCCcEEEEEecCCCcc
Q 037138 215 LENRSLEERASGIFKI--L-SKKKFLLLLDDVWERI 247 (806)
Q Consensus 215 ~~~~~~~~~~~~l~~~--l-~~k~~LlvlDdv~~~~ 247 (806)
.++. + .++--++|||+.++..
T Consensus 103 ------------AQ~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 103 ------------AQKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred ------------HHhhccCCCCceeEEEeeccchhh
Confidence 0111 1 2455689999998753
No 190
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.34 E-value=0.00012 Score=71.13 Aligned_cols=44 Identities=11% Similarity=-0.113 Sum_probs=22.5
Q ss_pred ccccceecccccccccccccCCCCCchHHHH-HccCCCCCCCCCCCCcc
Q 037138 736 FAKLQYLHLRALPSLKSIYWNALPSHIWKKL-IMGCAGLKKLPLDSNSR 783 (806)
Q Consensus 736 ~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~l-l~~c~~L~~L~l~~n~~ 783 (806)
+|+|..|...+.. ...+...-.++..+ -...|-|..|...+|++
T Consensus 271 ~p~l~~L~~~Yne----~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 271 VPNLMPLPGDYNE----RRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred CCCccccccchhh----hcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 5666666665421 11111122334444 45667777777777763
No 191
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.32 E-value=0.00061 Score=67.16 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=30.2
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEe
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVV 195 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 195 (806)
-.++|+|..|+||||++..+.... ...|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 467789999999999999999887 678887777754
No 192
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.30 E-value=0.00067 Score=76.88 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=39.1
Q ss_pred CccccchHHHHHHHHHhcCC-----CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGEE-----RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~-----~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|.++.++++..++... ...++.|+|++|+||||+++.++...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999888652 34579999999999999999999875
No 193
>PRK06921 hypothetical protein; Provisional
Probab=97.28 E-value=0.00063 Score=69.38 Aligned_cols=97 Identities=18% Similarity=0.254 Sum_probs=56.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKK 234 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 234 (806)
....+.++|.+|+|||+||.++++... ...-..++|++. .+++..+.... .... ...+.+. +
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~------~~l~~~l~~~~--------~~~~-~~~~~~~-~ 177 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF------VEGFGDLKDDF--------DLLE-AKLNRMK-K 177 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH------HHHHHHHHHHH--------HHHH-HHHHHhc-C
Confidence 456799999999999999999999872 221345667764 23333332221 1111 1222232 3
Q ss_pred cEEEEEecCCC-------ccCcc--cccccCCC--CCCcEEEEecC
Q 037138 235 KFLLLLDDVWE-------RIDLT--KVGIPFPS--KNTSKVVFTTR 269 (806)
Q Consensus 235 ~~LlvlDdv~~-------~~~~~--~~~~~~~~--~~~s~iivTtr 269 (806)
-=||||||+.. ..+|. .+...+.. ..+..+||||.
T Consensus 178 ~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn 223 (266)
T PRK06921 178 VEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSE 223 (266)
T ss_pred CCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 45999999932 12333 23333333 34567888887
No 194
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.19 E-value=0.00057 Score=61.85 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=20.7
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q 037138 159 IGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~ 180 (806)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5789999999999999999997
No 195
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.013 Score=60.02 Aligned_cols=182 Identities=19% Similarity=0.263 Sum_probs=103.2
Q ss_pred cccchHHHHHHHHHhcC-------------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHH
Q 037138 137 IVGLNSTLEKVWRCLGE-------------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLER 203 (806)
Q Consensus 137 ~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~ 203 (806)
+=|-++.+++|.+...- +.++=|-+||++|.|||-||++|++.. ...| +.|... +
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----IrvvgS----E 220 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVGS----E 220 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEeccH----H
Confidence 45788888888887631 367788999999999999999999986 3333 333221 1
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHh-CCCcEEEEEecCCCcc----------C------cccccccCC---CCCCcE
Q 037138 204 IQEKIGERIGLLENRSLEERASGIFKIL-SKKKFLLLLDDVWERI----------D------LTKVGIPFP---SKNTSK 263 (806)
Q Consensus 204 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l-~~k~~LlvlDdv~~~~----------~------~~~~~~~~~---~~~~s~ 263 (806)
+.+..+ | +-.-+...+...- ...+.+|++|.++... + .-++...+. ....-|
T Consensus 221 lVqKYi---G-----EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvK 292 (406)
T COG1222 221 LVQKYI---G-----EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVK 292 (406)
T ss_pred HHHHHh---c-----cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeE
Confidence 211111 1 1122233333333 3568999999987421 1 111222221 145568
Q ss_pred EEEecCC----------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHH----HHHhh
Q 037138 264 VVFTTRL----------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLA----LITTG 323 (806)
Q Consensus 264 iivTtr~----------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPla----i~~~g 323 (806)
||..|.. .++++.-+.+.-.++|+-++..-.....-+++ .+++.|.|.-=| +.+=|
T Consensus 293 VI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdlkaictEA 368 (406)
T COG1222 293 VIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADLKAICTEA 368 (406)
T ss_pred EEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHHHHHHHHH
Confidence 8887765 56777555555566788777654434444554 455556655433 22222
Q ss_pred ----hcCC---CCHHHHHHHHHHHhh
Q 037138 324 ----LGCK---KSQEEWSYAIEILRR 342 (806)
Q Consensus 324 ----~~~~---~~~~~w~~~l~~l~~ 342 (806)
++.. -+.+++.++.+..-.
T Consensus 369 Gm~AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 369 GMFAIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred hHHHHHhccCeecHHHHHHHHHHHHh
Confidence 2222 355666666555433
No 196
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.007 Score=66.70 Aligned_cols=152 Identities=18% Similarity=0.185 Sum_probs=83.5
Q ss_pred ccccchHHHHHHHHHhcC-------------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH
Q 037138 136 TIVGLNSTLEKVWRCLGE-------------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE 202 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 202 (806)
++=|-|+.+.+|.+.+.- ...+-|-.+|++|+|||++|+++++.. .-.| +.++- .
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkg----p 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKG----P 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccC----H
Confidence 344577777776655421 357788999999999999999999986 3444 22211 1
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCccC-------------cccccccCCC-CCCcE--EEE
Q 037138 203 RIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERID-------------LTKVGIPFPS-KNTSK--VVF 266 (806)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~-------------~~~~~~~~~~-~~~s~--iiv 266 (806)
+++... - ..++....+..++.=+--+.++.||+++.... +.++..-+.. ..... ||-
T Consensus 503 EL~sk~----v---GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViA 575 (693)
T KOG0730|consen 503 ELFSKY----V---GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIA 575 (693)
T ss_pred HHHHHh----c---CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEe
Confidence 111111 0 22222222223333344568999998864210 1112122222 12222 333
Q ss_pred ec-CC---------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHH
Q 037138 267 TT-RL---------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAH 306 (806)
Q Consensus 267 Tt-r~---------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~ 306 (806)
.| |. .+.++.-+.+--.++|+.++..-.....-+++++++
T Consensus 576 ATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 576 ATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred ccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 33 22 567777777777889999886554444445666654
No 197
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.14 E-value=0.0028 Score=59.49 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=67.6
Q ss_pred cchHHHHHHHHHhcCCCce-EEEEEccCCCCHHHHHHHHHhhcCCCC-----------------CCCCeEEEEEeCCc--
Q 037138 139 GLNSTLEKVWRCLGEERVG-IIGLYGMGGVGKTTLLAQINNKFLDTP-----------------NDFDVVIWVVVSKD-- 198 (806)
Q Consensus 139 gr~~~~~~l~~~l~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~-----------------~~F~~~~wv~~s~~-- 198 (806)
|-+...+.+.+.+..++++ .+-++|+.|+||+|+|..++....-.. ....-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 5567778888888777655 679999999999999999988652111 11222333332221
Q ss_pred -ccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC
Q 037138 199 -MQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL 270 (806)
Q Consensus 199 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~ 270 (806)
..+.++. .+...+... -..+++-++|+||++.. .....+...+.. ..++.+|++|++
T Consensus 81 ~i~i~~ir-~i~~~~~~~--------------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLS--------------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS---------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred hhhHHHHH-HHHHHHHHH--------------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 2232222 222222111 11346779999999754 344555555544 678898888886
No 198
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.003 Score=70.18 Aligned_cols=143 Identities=22% Similarity=0.278 Sum_probs=82.0
Q ss_pred cccchHHHHHHHHHhc------CCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHH
Q 037138 137 IVGLNSTLEKVWRCLG------EERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGE 210 (806)
Q Consensus 137 ~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 210 (806)
=+|.++.+++|++.|. +-+-+++++||++|||||+|++.++.-. .+.| +-++++.-.|..+|-..=-.
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf---vR~sLGGvrDEAEIRGHRRT 398 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF---VRISLGGVRDEAEIRGHRRT 398 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE---EEEecCccccHHHhcccccc
Confidence 3899999999999883 1245799999999999999999999987 3444 22333333333332111000
Q ss_pred HhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc-C--------ccccccc---------CCC--CCCcE-EEEecC
Q 037138 211 RIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERI-D--------LTKVGIP---------FPS--KNTSK-VVFTTR 269 (806)
Q Consensus 211 ~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~-~--------~~~~~~~---------~~~--~~~s~-iivTtr 269 (806)
.+|. .. ....+.+ ...+.+.-+++||.++... + +-++..| ... -.=|+ +.|||-
T Consensus 399 YIGa---mP-GrIiQ~m-kka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTA 473 (782)
T COG0466 399 YIGA---MP-GKIIQGM-KKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATA 473 (782)
T ss_pred cccc---CC-hHHHHHH-HHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeec
Confidence 0110 00 0011111 2234567799999997431 0 1111111 111 11133 345554
Q ss_pred C--------------ceecccCChHHHHHHHHhhh
Q 037138 270 L--------------IFKVECLRDKEAWELFLDKV 290 (806)
Q Consensus 270 ~--------------~~~l~~L~~~e~~~lf~~~~ 290 (806)
+ ++++.+.+++|=.++-+++.
T Consensus 474 Nsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 474 NSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred CccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4 78899999999888877765
No 199
>PRK07261 topology modulation protein; Provisional
Probab=97.13 E-value=0.0013 Score=62.49 Aligned_cols=67 Identities=19% Similarity=0.319 Sum_probs=42.2
Q ss_pred EEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEE
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFL 237 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~L 237 (806)
.|.|+|++|+||||||+++.....-..-+.|...|-.... ..+.++....+...+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~-- 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQ-------------------ERDDDDMIADISNFLLKHD-- 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccc-------------------cCCHHHHHHHHHHHHhCCC--
Confidence 4899999999999999999876511122455555532111 2234445555666666666
Q ss_pred EEEecCCC
Q 037138 238 LLLDDVWE 245 (806)
Q Consensus 238 lvlDdv~~ 245 (806)
.|+|+.-.
T Consensus 61 wIidg~~~ 68 (171)
T PRK07261 61 WIIDGNYS 68 (171)
T ss_pred EEEcCcch
Confidence 67788643
No 200
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0087 Score=65.10 Aligned_cols=91 Identities=21% Similarity=0.242 Sum_probs=59.7
Q ss_pred ccccchHHHHHHHHHhcC------------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHH
Q 037138 136 TIVGLNSTLEKVWRCLGE------------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLER 203 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~ 203 (806)
++=|.++.+.++.+.+.. ...+-|-++|++|+|||.||+++++.. . +-++.++-+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~-------vPf~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-G-------VPFLSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-C-------CceEeecch-----
Confidence 456888888888776621 256778899999999999999999987 2 222333321
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCC
Q 037138 204 IQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWE 245 (806)
Q Consensus 204 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~ 245 (806)
+|+.... ..+.+...+...+.-..-++++++|+++-
T Consensus 258 ---eivSGvS---GESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGVS---GESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhcccC---cccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 2222222 33333333344455567899999999974
No 201
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.11 E-value=0.0022 Score=64.15 Aligned_cols=112 Identities=20% Similarity=0.221 Sum_probs=62.4
Q ss_pred HHHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCH
Q 037138 143 TLEKVWRCLGE--ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSL 220 (806)
Q Consensus 143 ~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 220 (806)
.+..+.++..+ .....+.++|.+|+|||+||.++++... ..-..+++++ ..++...+-.... ....+.
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~-~~~~~~ 153 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFS-NSETSE 153 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHh-hccccH
Confidence 34444444432 2345789999999999999999999872 2224556664 3445554443332 111122
Q ss_pred HHHHHHHHHHhCCCcEEEEEecCCCc--cCccc--ccccCCC--CCCcEEEEecC
Q 037138 221 EERASGIFKILSKKKFLLLLDDVWER--IDLTK--VGIPFPS--KNTSKVVFTTR 269 (806)
Q Consensus 221 ~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~--~~~~~~~--~~~s~iivTtr 269 (806)
..+.+.+. +.=+||+||+... .+|.. +...+.. .....+||||.
T Consensus 154 ----~~~l~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSN 203 (244)
T PRK07952 154 ----EQLLNDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTN 203 (244)
T ss_pred ----HHHHHHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 22333444 3448888999643 23432 2222222 34567788877
No 202
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.10 E-value=0.0028 Score=66.50 Aligned_cols=99 Identities=18% Similarity=0.188 Sum_probs=64.0
Q ss_pred HHHHHHHhcC-CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCe-EEEEEeCCc-ccHHHHHHHHHHHhCCCC-CCC
Q 037138 144 LEKVWRCLGE-ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDV-VIWVVVSKD-MQLERIQEKIGERIGLLE-NRS 219 (806)
Q Consensus 144 ~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~s~~-~~~~~~~~~i~~~l~~~~-~~~ 219 (806)
..++++.+.. +.-.-+.|+|.+|+|||||++.+++... ..+-+. ++|+.+.+. ..+.++.+.+...+.... ...
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 3456666643 3335669999999999999999998762 223344 467777654 467888888887666432 111
Q ss_pred HHHH------HHHHHHHh--CCCcEEEEEecCC
Q 037138 220 LEER------ASGIFKIL--SKKKFLLLLDDVW 244 (806)
Q Consensus 220 ~~~~------~~~l~~~l--~~k~~LlvlDdv~ 244 (806)
.... .....+++ ++++++||+|++-
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 1111 11222222 6899999999984
No 203
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.10 E-value=0.0029 Score=74.73 Aligned_cols=46 Identities=26% Similarity=0.423 Sum_probs=37.4
Q ss_pred CccccchHHHHHHHHHhcC-------C--CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGE-------E--RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|.+..++.+.+.+.. . ...++.++|+.|+|||+||+.++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 4578999888888887742 1 24578899999999999999999876
No 204
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=3.7e-05 Score=74.74 Aligned_cols=101 Identities=26% Similarity=0.250 Sum_probs=80.1
Q ss_pred CCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccCh--hhhcCCCCcE
Q 037138 478 TCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPK--ELKALVNLKY 555 (806)
Q Consensus 478 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~--~i~~L~~L~~ 555 (806)
.+.+.+.|++.+|.++++.- ...|+.|.||.||-| .+..+. .+..|++|+.|+|..|.|..+-+ -+.+|++|+.
T Consensus 17 dl~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHHHH--HHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 35677888999998888764 678999999999999 455553 57889999999999998886643 4689999999
Q ss_pred EecCCCcccccccc----ccccCCCCCcEEE
Q 037138 556 LNLEHSRYLHTIPR----QLICSFSMLHVLR 582 (806)
Q Consensus 556 L~L~~~~~l~~lp~----~~~~~l~~L~~L~ 582 (806)
|.|..|...+.-+. .++..|++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99998876555543 2456688888886
No 205
>PRK08181 transposase; Validated
Probab=97.07 E-value=0.00097 Score=67.70 Aligned_cols=98 Identities=20% Similarity=0.165 Sum_probs=55.4
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKK 235 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 235 (806)
..-+.++|++|+|||.||..+.+... .....++|+++ .++...+..... ..+.... .+.+ .+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~~------~~L~~~l~~a~~---~~~~~~~----l~~l-~~~ 168 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTRT------TDLVQKLQVARR---ELQLESA----IAKL-DKF 168 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeeeH------HHHHHHHHHHHh---CCcHHHH----HHHH-hcC
Confidence 34589999999999999999998762 22334566643 445555533221 1222222 2222 234
Q ss_pred EEEEEecCCCc--cCc--ccccccCCC-CCCcEEEEecCC
Q 037138 236 FLLLLDDVWER--IDL--TKVGIPFPS-KNTSKVVFTTRL 270 (806)
Q Consensus 236 ~LlvlDdv~~~--~~~--~~~~~~~~~-~~~s~iivTtr~ 270 (806)
=||||||+... ..+ ..+...+.. -.+..+||||..
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 49999999632 111 122233333 223578999883
No 206
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.06 E-value=0.0003 Score=68.56 Aligned_cols=85 Identities=28% Similarity=0.385 Sum_probs=44.2
Q ss_pred cCCcccEEEccCCCcccccCcccCCCCCCCEEEecCC--Ccc-ccChhhhcCCCCcEEecCCCcc--ccccccccccCCC
Q 037138 502 FMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKT--SIR-ELPKELKALVNLKYLNLEHSRY--LHTIPRQLICSFS 576 (806)
Q Consensus 502 ~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n--~l~-~lp~~i~~L~~L~~L~L~~~~~--l~~lp~~~~~~l~ 576 (806)
.+..|..|++.+...+ .+ ..+-.|++|++|.+|.| .+. .++....++++|++|++++|++ +..+++ +..+.
T Consensus 41 ~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELE 116 (260)
T ss_pred cccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhc
Confidence 3444445555444222 11 13335666666666666 333 4444455556666666666652 123333 45566
Q ss_pred CCcEEEeecccCCC
Q 037138 577 MLHVLRMVNCDYSG 590 (806)
Q Consensus 577 ~L~~L~l~~~~~~~ 590 (806)
+|..|++++|....
T Consensus 117 nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTN 130 (260)
T ss_pred chhhhhcccCCccc
Confidence 66666666665543
No 207
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.02 E-value=0.011 Score=69.56 Aligned_cols=47 Identities=28% Similarity=0.354 Sum_probs=39.6
Q ss_pred CCccccchHHHHHHHHHhcC------CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 134 EPTIVGLNSTLEKVWRCLGE------ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 134 ~~~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+.+.+|.++.+++|++++.. ....++.++|++|+||||+|+.++...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999988742 245689999999999999999999876
No 208
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.02 E-value=0.00029 Score=68.59 Aligned_cols=107 Identities=28% Similarity=0.280 Sum_probs=75.6
Q ss_pred CCCCccccccccccchhcchhHhhccCCcccEEEccCC--CcccccCcccCCCCCCCEEEecCCCcccc--ChhhhcCCC
Q 037138 477 PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNN--GFLTKLRPGISKLVSLQYLNLSKTSIREL--PKELKALVN 552 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~--~~~~~lp~~i~~l~~L~~L~Ls~n~l~~l--p~~i~~L~~ 552 (806)
..+..|..|.+.+..++.+.. |..+++|+.|.+|.| +..+.++.....+++|++|++++|+|..+ -..+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 345666677776666655543 677889999999999 56666766667779999999999987732 124677888
Q ss_pred CcEEecCCCccccccc---cccccCCCCCcEEEeecc
Q 037138 553 LKYLNLEHSRYLHTIP---RQLICSFSMLHVLRMVNC 586 (806)
Q Consensus 553 L~~L~L~~~~~l~~lp---~~~~~~l~~L~~L~l~~~ 586 (806)
|..|++.+|.... +- ..+|.-+++|.+|+-...
T Consensus 118 L~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 9999999886322 22 234566788888876544
No 209
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.01 E-value=0.029 Score=67.14 Aligned_cols=46 Identities=28% Similarity=0.432 Sum_probs=37.5
Q ss_pred CccccchHHHHHHHHHhcC-------C--CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGE-------E--RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|.+..++.+...+.. . ...++.++|+.|+|||++|+.+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999888887742 1 23578899999999999999999875
No 210
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.99 E-value=0.00083 Score=64.74 Aligned_cols=127 Identities=16% Similarity=0.178 Sum_probs=62.8
Q ss_pred chHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeC----Cc--ccHHH-------HHH
Q 037138 140 LNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVS----KD--MQLER-------IQE 206 (806)
Q Consensus 140 r~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s----~~--~~~~~-------~~~ 206 (806)
+..+-...++.|. ...++.+.|++|+|||.||.+.+-+. -..+.|+.++++.-. +. |-+-+ ...
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TTTH
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 3445555666665 56699999999999999999998765 234788888887521 11 00011 122
Q ss_pred HHHHHhCCCC-CCCHHHHHHH------HHHHhCCC---cEEEEEecCCCccCcccccccCCC-CCCcEEEEecCC
Q 037138 207 KIGERIGLLE-NRSLEERASG------IFKILSKK---KFLLLLDDVWERIDLTKVGIPFPS-KNTSKVVFTTRL 270 (806)
Q Consensus 207 ~i~~~l~~~~-~~~~~~~~~~------l~~~l~~k---~~LlvlDdv~~~~~~~~~~~~~~~-~~~s~iivTtr~ 270 (806)
.+.+.+..-. ....+...+. -..+++|+ ..++|+|++.+.. -.++...+.. +.|||||++--.
T Consensus 82 p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t-~~~~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 82 PIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLT-PEELKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG---HHHHHHHHTTB-TT-EEEEEE--
T ss_pred HHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCC-HHHHHHHHcccCCCcEEEEecCc
Confidence 2222222211 2222222211 01234454 4699999997632 2233333455 789999998653
No 211
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.025 Score=59.04 Aligned_cols=162 Identities=7% Similarity=0.072 Sum_probs=90.7
Q ss_pred HHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCC---e-E----EEEEeCCcccHHHHHHHHHHHh
Q 037138 142 STLEKVWRCLGEER-VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFD---V-V----IWVVVSKDMQLERIQEKIGERI 212 (806)
Q Consensus 142 ~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~---~-~----~wv~~s~~~~~~~~~~~i~~~l 212 (806)
...+.+.+.+..+. ...+-+.|+.|+||+++|+.++....- ..... + . -++..+..+|+..+...
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC-~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~----- 82 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC-QTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI----- 82 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc-----
Confidence 34556777776655 457779999999999999999876521 01000 0 0 00000111111000000
Q ss_pred CCCCCCCHHHHHHHHHHHh-----CCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-------------c
Q 037138 213 GLLENRSLEERASGIFKIL-----SKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL-------------I 271 (806)
Q Consensus 213 ~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~-------------~ 271 (806)
. ...-..++. +.+.+.+ .+++-++|+|+++.. .....+...+.. ..++.+|++|.+ .
T Consensus 83 ~-~~~I~id~i-R~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 83 D-NKDIGVDQV-REINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred c-CCCCCHHHH-HHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 0 000112221 2222222 366778899999754 334445444544 556676766655 7
Q ss_pred eecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHH
Q 037138 272 FKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLAL 319 (806)
Q Consensus 272 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 319 (806)
+.+.+++.++..+.+....... ...+...++.++|.|+.+
T Consensus 161 ~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred EeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 8999999999998887654211 123567788999999644
No 212
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.99 E-value=0.0052 Score=72.80 Aligned_cols=45 Identities=33% Similarity=0.375 Sum_probs=36.6
Q ss_pred ccccchHHHHHHHHHhcC-------------CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 136 TIVGLNSTLEKVWRCLGE-------------ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
++.|.+..++++.+.+.- ...+.|.++|++|+||||||+.+++..
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 478999998888776521 234678899999999999999999976
No 213
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.98 E-value=0.0024 Score=61.78 Aligned_cols=85 Identities=22% Similarity=0.238 Sum_probs=53.8
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC-cccHHHHHHHHHHHhCCCC-----CCCHHHHHHHHHH
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIGLLE-----NRSLEERASGIFK 229 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~l~~ 229 (806)
++||.++|+.|+||||.+.+++.... ..-..+..++... .....+-++..++.++.+. ..+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~---~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK---LKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH---HTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh---hccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 47999999999999999999888872 2244577777543 2355677788888888653 2234444433333
Q ss_pred HhCC-CcEEEEEecC
Q 037138 230 ILSK-KKFLLLLDDV 243 (806)
Q Consensus 230 ~l~~-k~~LlvlDdv 243 (806)
..+. +.=++++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 3333 3347777765
No 214
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.02 Score=65.77 Aligned_cols=104 Identities=21% Similarity=0.348 Sum_probs=64.1
Q ss_pred CccccchHHHHHHHHHhcC---------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLGE---------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQ 205 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 205 (806)
..++|-+..++.+.+.+.. ....+.-..|+.|||||-||++++... .+.=+..+-++.|.-.. -
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~E----k 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYME----K 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHH----H
Confidence 4689999999999888732 246788889999999999999999876 11113334443332111 1
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHhCCCcE-EEEEecCCC
Q 037138 206 EKIGERIGLLENRSLEERASGIFKILSKKKF-LLLLDDVWE 245 (806)
Q Consensus 206 ~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~-LlvlDdv~~ 245 (806)
+.+.+-+|.+...---+-...|-+..+.++| +|.||+|..
T Consensus 564 HsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred HHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhh
Confidence 1222333443311111113345566778888 888999974
No 215
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.96 E-value=0.0082 Score=71.18 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=87.3
Q ss_pred ccccchHHHHHHHHHhcC-------------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH
Q 037138 136 TIVGLNSTLEKVWRCLGE-------------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE 202 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 202 (806)
++.|.+..++++.+.+.- ...+-|.++|++|+|||++|+++++.. ...| +.++. .
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~----~ 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRG----P 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----H
Confidence 467888887777665521 234568899999999999999999986 2232 22221 1
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc-----C---------cccccccCCC---CCCcEEE
Q 037138 203 RIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERI-----D---------LTKVGIPFPS---KNTSKVV 265 (806)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~-----~---------~~~~~~~~~~---~~~s~ii 265 (806)
++ +... ...+...........-...+.+|++|+++... . ..++...+.. ..+--||
T Consensus 522 ~l----~~~~---vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI 594 (733)
T TIGR01243 522 EI----LSKW---VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVI 594 (733)
T ss_pred HH----hhcc---cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEE
Confidence 11 1111 01122222222222334667999999986421 0 1111111221 2344566
Q ss_pred EecCC----------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch
Q 037138 266 FTTRL----------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP 316 (806)
Q Consensus 266 vTtr~----------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 316 (806)
.||.. .+.++..+.++-.++|+.+..........+ ...+++.+.|.-
T Consensus 595 ~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 595 AATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 66644 567788888888888876654332222222 345666677653
No 216
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.94 E-value=0.036 Score=58.88 Aligned_cols=184 Identities=16% Similarity=0.207 Sum_probs=111.4
Q ss_pred chHHHHHHHHHhcCCCceEEEEEccCCCCHHHHH-HHHHhhcCCCCCCCCeEEEEEeCCc---ccHHHHHHHHHHHhCCC
Q 037138 140 LNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLL-AQINNKFLDTPNDFDVVIWVVVSKD---MQLERIQEKIGERIGLL 215 (806)
Q Consensus 140 r~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~F~~~~wv~~s~~---~~~~~~~~~i~~~l~~~ 215 (806)
|.+..++|..||.+..-..|.|.||-|+||+.|+ .++..+. +.++.+++.+- .+-..+...++.++|-.
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5677899999999888889999999999999999 7776664 12677765432 23344445555544321
Q ss_pred -----------------------C---CCCHHHHHHH--------HHH-------------------Hh---CCCcEEEE
Q 037138 216 -----------------------E---NRSLEERASG--------IFK-------------------IL---SKKKFLLL 239 (806)
Q Consensus 216 -----------------------~---~~~~~~~~~~--------l~~-------------------~l---~~k~~Llv 239 (806)
. ..+.+..... |++ +| ..++-+||
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 1 2233222222 111 01 01366899
Q ss_pred EecCCCccC-----cccc---cccCCCCCCcEEEEecCC-----------------ceecccCChHHHHHHHHhhhCCCc
Q 037138 240 LDDVWERID-----LTKV---GIPFPSKNTSKVVFTTRL-----------------IFKVECLRDKEAWELFLDKVGEET 294 (806)
Q Consensus 240 lDdv~~~~~-----~~~~---~~~~~~~~~s~iivTtr~-----------------~~~l~~L~~~e~~~lf~~~~~~~~ 294 (806)
+|+.-+..+ |+.+ ...+...+-.+||++|-+ .+.|...+++.|.++.........
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~ 233 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDT 233 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccc
Confidence 999865322 1221 112222456788888866 678999999999999988875431
Q ss_pred cC------------CC-----CChHHHHHHHHHHhCCchHHHHHhh--hcCCCCH
Q 037138 295 LD------------SH-----LDIPKLAHTLAKECGGLPLALITTG--LGCKKSQ 330 (806)
Q Consensus 295 ~~------------~~-----~~~~~~~~~i~~~c~GlPlai~~~g--~~~~~~~ 330 (806)
.. .. .....-....++..||=-.=+..++ +..+.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 234 EDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred cccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 00 00 1123334556677788777777777 4444444
No 217
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.93 E-value=0.011 Score=60.61 Aligned_cols=55 Identities=22% Similarity=0.265 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHH
Q 037138 143 TLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQ 205 (806)
Q Consensus 143 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 205 (806)
.++++..++..+ .-|-+.|++|+|||++|+.++... .. ..+.++++...+..+++
T Consensus 10 l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHHh
Confidence 344555555433 345589999999999999998754 22 34566666665555554
No 218
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.92 E-value=0.0046 Score=67.85 Aligned_cols=170 Identities=15% Similarity=0.171 Sum_probs=102.1
Q ss_pred CccccchHHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhC
Q 037138 135 PTIVGLNSTLEKVWRCLGEER-VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIG 213 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 213 (806)
++++|-+.....|...+..++ ..-....|+-|+||||+|+.++.-. .-. + + ......+.....+.|...-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~Akal-NC~-~-----~-~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKAL-NCE-N-----G-PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHh-cCC-C-----C-CCCCcchhhhhhHhhhcCCc
Confidence 457999999999999987664 3456678999999999999998865 111 0 0 11111222222233322100
Q ss_pred CCC-------CCCHHHHHHHHHHHh-----CCCcEEEEEecCC--CccCcccccccCCC-CCCcEEEEecCC--------
Q 037138 214 LLE-------NRSLEERASGIFKIL-----SKKKFLLLLDDVW--ERIDLTKVGIPFPS-KNTSKVVFTTRL-------- 270 (806)
Q Consensus 214 ~~~-------~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~--~~~~~~~~~~~~~~-~~~s~iivTtr~-------- 270 (806)
... ....++ .+.+.+.. +++--+.|+|+|. +...|..+...+.. ......|..|.+
T Consensus 88 ~DviEiDaASn~gVdd-iR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 88 IDVIEIDAASNTGVDD-IREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred ccchhhhhhhccChHH-HHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhh
Confidence 000 111222 22233322 4555689999996 34556666655555 455565555554
Q ss_pred -----ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch
Q 037138 271 -----IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP 316 (806)
Q Consensus 271 -----~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 316 (806)
.|.++.++.++-...+...+..+.+... .+....|++..+|..
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSL 214 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCCh
Confidence 7899999999888888888765543322 455667777777643
No 219
>PRK06526 transposase; Provisional
Probab=96.90 E-value=0.0011 Score=66.97 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=52.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKK 234 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 234 (806)
...-+.++|++|+|||+||..+..... ...+ .+.|+ +..++...+..... ..... ..+.. + .+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~--~~g~-~v~f~------t~~~l~~~l~~~~~---~~~~~---~~l~~-l-~~ 159 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRAC--QAGH-RVLFA------TAAQWVARLAAAHH---AGRLQ---AELVK-L-GR 159 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHH--HCCC-chhhh------hHHHHHHHHHHHHh---cCcHH---HHHHH-h-cc
Confidence 345689999999999999999988762 2222 23443 23344444433221 11111 22222 2 23
Q ss_pred cEEEEEecCCCcc--Cc--ccccccCCC--CCCcEEEEecCC
Q 037138 235 KFLLLLDDVWERI--DL--TKVGIPFPS--KNTSKVVFTTRL 270 (806)
Q Consensus 235 ~~LlvlDdv~~~~--~~--~~~~~~~~~--~~~s~iivTtr~ 270 (806)
.-+||+||+.... .+ +.+...+.. ..+ .+|+||..
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~ 200 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNK 200 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCC
Confidence 4589999996421 11 122222222 233 48888884
No 220
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.90 E-value=0.0037 Score=74.45 Aligned_cols=47 Identities=23% Similarity=0.407 Sum_probs=38.7
Q ss_pred CCccccchHHHHHHHHHhcC---------CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 134 EPTIVGLNSTLEKVWRCLGE---------ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 134 ~~~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...++|.+..++.+.+.+.. ....++.++|++|+|||.+|+.++...
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999887731 234578999999999999999998876
No 221
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.89 E-value=0.0042 Score=68.74 Aligned_cols=139 Identities=17% Similarity=0.128 Sum_probs=76.8
Q ss_pred CccccchHHHHHHHHHh---cC-------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHH
Q 037138 135 PTIVGLNSTLEKVWRCL---GE-------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERI 204 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l---~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~ 204 (806)
.++.|.+..++.+.+.. .. ...+-|-++|++|+|||.+|+.+++.. .-.| +-+..+ .+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~l 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------KL 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------Hh
Confidence 35678777666665422 11 245678899999999999999999987 2222 122211 11
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCccC----c----------ccccccCCC-CCCcEEEEecC
Q 037138 205 QEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERID----L----------TKVGIPFPS-KNTSKVVFTTR 269 (806)
Q Consensus 205 ~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~----~----------~~~~~~~~~-~~~s~iivTtr 269 (806)
... . ...+.....+.+...-...+.+|++|+++.... . ..+...+.. ..+--||.||.
T Consensus 296 ~~~----~---vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN 368 (489)
T CHL00195 296 FGG----I---VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATAN 368 (489)
T ss_pred ccc----c---cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 110 0 011111111222222235789999999974211 0 001111112 23344666775
Q ss_pred C----------------ceecccCChHHHHHHHHhhhCC
Q 037138 270 L----------------IFKVECLRDKEAWELFLDKVGE 292 (806)
Q Consensus 270 ~----------------~~~l~~L~~~e~~~lf~~~~~~ 292 (806)
. .+.++.-+.++-.++|+.+...
T Consensus 369 ~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 369 NIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred ChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 4 5778888888888898877644
No 222
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.88 E-value=0.00082 Score=59.80 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=21.7
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+|+|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 223
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0058 Score=67.55 Aligned_cols=140 Identities=20% Similarity=0.110 Sum_probs=83.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCc--ccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKD--MQLERIQEKIGERIGLLENRSLEERASGIFKILS 232 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~ 232 (806)
...-|-|.|+.|+|||+||+++++... +.+.-.+.+|+++.- ...+.+++.+.. ..-+.+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~---------------vfse~~~ 492 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLNN---------------VFSEALW 492 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHHH---------------HHHHHHh
Confidence 356789999999999999999999983 666667778877643 234444444322 2234456
Q ss_pred CCcEEEEEecCCCcc--------Cccc-----------ccccCCCCCCc--EEEEecCC----------------ceecc
Q 037138 233 KKKFLLLLDDVWERI--------DLTK-----------VGIPFPSKNTS--KVVFTTRL----------------IFKVE 275 (806)
Q Consensus 233 ~k~~LlvlDdv~~~~--------~~~~-----------~~~~~~~~~~s--~iivTtr~----------------~~~l~ 275 (806)
-.+-++||||++-.. +|.. +...+. ..+. .+|.|... .+.+.
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~-~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYL-KRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH-ccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 678899999996321 1211 111111 2333 34455544 56788
Q ss_pred cCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCc
Q 037138 276 CLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGL 315 (806)
Q Consensus 276 ~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 315 (806)
.+...+-.++++........ ....+...-++.+|+|.
T Consensus 572 ap~~~~R~~IL~~~~s~~~~---~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNLS---DITMDDLDFLSVKTEGY 608 (952)
T ss_pred CcchhHHHHHHHHHHHhhhh---hhhhHHHHHHHHhcCCc
Confidence 88877777777665532221 11122233377777764
No 224
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.87 E-value=0.031 Score=58.21 Aligned_cols=150 Identities=13% Similarity=0.077 Sum_probs=91.3
Q ss_pred HHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHhhcCCC------------------CCCCCeEEEEEe---CCcc
Q 037138 142 STLEKVWRCLGEER-VGIIGLYGMGGVGKTTLLAQINNKFLDT------------------PNDFDVVIWVVV---SKDM 199 (806)
Q Consensus 142 ~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------------~~~F~~~~wv~~---s~~~ 199 (806)
...+++.+.+..++ ...+-++|+.|+||+++|+.++....-. ..|-| ..|+.- ++..
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~~I 88 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKEGKSI 88 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcCCCcC
Confidence 34566677666554 4578899999999999999987754210 01222 122211 0111
Q ss_pred cHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHh-----CCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-
Q 037138 200 QLERIQEKIGERIGLLENRSLEERASGIFKIL-----SKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL- 270 (806)
Q Consensus 200 ~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~- 270 (806)
. .++. +.+.+.+ .+.+-++|+|+++.. .....+...+.. ..++.+|++|.+
T Consensus 89 ~-------------------vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (319)
T PRK06090 89 T-------------------VEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQ 148 (319)
T ss_pred C-------------------HHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 1 1221 1222222 345668899999754 344455555544 556766666654
Q ss_pred ------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhh
Q 037138 271 ------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITTG 323 (806)
Q Consensus 271 ------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g 323 (806)
.+.+.+++.+++.+.+.... . . .+..+++.++|.|+.+..+.
T Consensus 149 ~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~-~-------~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 149 KRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---I-T-------VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred hhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---C-c-------hHHHHHHHcCCCHHHHHHHh
Confidence 78999999999998886531 0 0 24567899999998775544
No 225
>PRK09183 transposase/IS protein; Provisional
Probab=96.86 E-value=0.0019 Score=65.63 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=51.2
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKK 235 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 235 (806)
...+.|+|++|+|||+||..+++... ... ..+.+++ ..++...+..... .... ...+... ..+.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~--~~G-~~v~~~~------~~~l~~~l~~a~~---~~~~---~~~~~~~-~~~~ 165 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAV--RAG-IKVRFTT------AADLLLQLSTAQR---QGRY---KTTLQRG-VMAP 165 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH--HcC-CeEEEEe------HHHHHHHHHHHHH---CCcH---HHHHHHH-hcCC
Confidence 35677999999999999999987751 122 2344443 2334333322211 1111 1122222 2345
Q ss_pred EEEEEecCCCc--cCcc--cccccCCC--CCCcEEEEecC
Q 037138 236 FLLLLDDVWER--IDLT--KVGIPFPS--KNTSKVVFTTR 269 (806)
Q Consensus 236 ~LlvlDdv~~~--~~~~--~~~~~~~~--~~~s~iivTtr 269 (806)
-++|+||+... ..+. .+...+.. ..+ .+|+||.
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~-s~iiTsn 204 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKG-SMILTSN 204 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcC-cEEEecC
Confidence 69999999642 1111 12222222 334 4888887
No 226
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.83 E-value=0.025 Score=63.92 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=38.3
Q ss_pred ccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 136 TIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+++|.+..++.+...+......-|.|+|++|+|||++|+.+++..
T Consensus 66 ~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999887766655667899999999999999998753
No 227
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.81 E-value=0.0073 Score=61.06 Aligned_cols=133 Identities=19% Similarity=0.198 Sum_probs=80.0
Q ss_pred CccccchHHHHHHHHHhcC----CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccH-HHHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLGE----ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQL-ERIQEKIG 209 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~-~~~~~~i~ 209 (806)
..++|-.++..++-+++.. ++..-+.|+|+.|.|||+|...+..+..+..++ .+-|........ .-+++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhhHHHHHHHH
Confidence 4578999988888888854 566778899999999999998888874233333 344444443322 22445555
Q ss_pred HHhCCCC------CCCHHHHHHHHHHHhCC------CcEEEEEecCCCccC------cccccccCC-C-CCCcEEEEecC
Q 037138 210 ERIGLLE------NRSLEERASGIFKILSK------KKFLLLLDDVWERID------LTKVGIPFP-S-KNTSKVVFTTR 269 (806)
Q Consensus 210 ~~l~~~~------~~~~~~~~~~l~~~l~~------k~~LlvlDdv~~~~~------~~~~~~~~~-~-~~~s~iivTtr 269 (806)
.|+.... ..+..+....+...|+. -++++|+|+.+--.. +-.+..... . .+-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 5543221 34445555556555532 368889988763211 111111111 1 45677889999
Q ss_pred C
Q 037138 270 L 270 (806)
Q Consensus 270 ~ 270 (806)
-
T Consensus 181 l 181 (408)
T KOG2228|consen 181 L 181 (408)
T ss_pred c
Confidence 4
No 228
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.81 E-value=0.0017 Score=67.77 Aligned_cols=45 Identities=24% Similarity=0.426 Sum_probs=40.2
Q ss_pred ccccchHHHHHHHHHhcC------CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 136 TIVGLNSTLEKVWRCLGE------ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+++|.++.++++++++.. ...+++.++|++|+||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999998843 356899999999999999999999987
No 229
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.47 Score=46.11 Aligned_cols=45 Identities=27% Similarity=0.350 Sum_probs=35.0
Q ss_pred ccccchHHHHHHHHHhc-------------CCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 136 TIVGLNSTLEKVWRCLG-------------EERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
++=|.+..+.++.+... -+.++-|.++|++|+|||-||++|+++.
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 34567777777666542 1467788899999999999999999986
No 230
>PRK04132 replication factor C small subunit; Provisional
Probab=96.80 E-value=0.017 Score=67.69 Aligned_cols=137 Identities=12% Similarity=0.081 Sum_probs=87.4
Q ss_pred cCCCCHHHHHHHHHhhcCCCCCCC-CeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEec
Q 037138 164 MGGVGKTTLLAQINNKFLDTPNDF-DVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDD 242 (806)
Q Consensus 164 ~~GiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDd 242 (806)
|.++||||+|..++++. -. +.+ ..++-++.|+..++..+.. ++..+....+ .-..+.-++|+|+
T Consensus 574 Ph~lGKTT~A~ala~~l-~g-~~~~~~~lElNASd~rgid~IR~-iIk~~a~~~~------------~~~~~~KVvIIDE 638 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FG-ENWRHNFLELNASDERGINVIRE-KVKEFARTKP------------IGGASFKIIFLDE 638 (846)
T ss_pred CCcccHHHHHHHHHHhh-hc-ccccCeEEEEeCCCcccHHHHHH-HHHHHHhcCC------------cCCCCCEEEEEEC
Confidence 77899999999999986 11 222 3567788887666554433 3222210000 0012457999999
Q ss_pred CCCcc--CcccccccCCC-CCCcEEEEecCC-------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHH
Q 037138 243 VWERI--DLTKVGIPFPS-KNTSKVVFTTRL-------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAH 306 (806)
Q Consensus 243 v~~~~--~~~~~~~~~~~-~~~s~iivTtr~-------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~ 306 (806)
++... ....+...+.. ...+++|.+|.+ .+.+.+++.++-...+...+....... -.+...
T Consensus 639 aD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i---~~e~L~ 715 (846)
T PRK04132 639 ADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL---TEEGLQ 715 (846)
T ss_pred cccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC---CHHHHH
Confidence 98643 44445444444 456677776655 789999999998888877664332111 156788
Q ss_pred HHHHHhCCchHH
Q 037138 307 TLAKECGGLPLA 318 (806)
Q Consensus 307 ~i~~~c~GlPla 318 (806)
.|++.|+|-+-.
T Consensus 716 ~Ia~~s~GDlR~ 727 (846)
T PRK04132 716 AILYIAEGDMRR 727 (846)
T ss_pred HHHHHcCCCHHH
Confidence 999999998743
No 231
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.80 E-value=0.0065 Score=61.26 Aligned_cols=88 Identities=23% Similarity=0.396 Sum_probs=56.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCC-CeEEEEEeCCcc-cHHHHHHHHHHHhCCCC--------CCCHHHH-
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDF-DVVIWVVVSKDM-QLERIQEKIGERIGLLE--------NRSLEER- 223 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~- 223 (806)
+-.-++|.|.+|+||||||+.+++.. +.+| +.++++-+.+.. .+.++.+.+...-.... ......+
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 44678999999999999999999987 3334 456666676654 45666666654322111 2222221
Q ss_pred -----HHHHHHHh--C-CCcEEEEEecCCC
Q 037138 224 -----ASGIFKIL--S-KKKFLLLLDDVWE 245 (806)
Q Consensus 224 -----~~~l~~~l--~-~k~~LlvlDdv~~ 245 (806)
+-.+.+++ + ++.+|+++||+-.
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 11234444 3 8999999999843
No 232
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.79 E-value=0.0083 Score=60.11 Aligned_cols=87 Identities=21% Similarity=0.224 Sum_probs=55.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCC------CeEEEEEeCCcccHHHHHHHHHHHhCC-----------CCC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDF------DVVIWVVVSKDMQLERIQEKIGERIGL-----------LEN 217 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F------~~~~wv~~s~~~~~~~~~~~i~~~l~~-----------~~~ 217 (806)
.-.++.|+|.+|+|||++|.+++.... ..- ..++|++....++...+.+ +++.... ...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~---~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ---LPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh---cccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEeC
Confidence 457999999999999999999987651 222 5689999887777655543 2232211 113
Q ss_pred CCHHHHHHHHHHHhC----CCcEEEEEecCCC
Q 037138 218 RSLEERASGIFKILS----KKKFLLLLDDVWE 245 (806)
Q Consensus 218 ~~~~~~~~~l~~~l~----~k~~LlvlDdv~~ 245 (806)
.+.++....+..... .+.-++|+|.+..
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 445555555554432 3445899998753
No 233
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.77 E-value=0.0004 Score=78.66 Aligned_cols=212 Identities=20% Similarity=0.227 Sum_probs=114.4
Q ss_pred CCCcccccccccc-chhcc-hhHhhccCCcccEEEccCC-Cccccc----CcccCCCCCCCEEEecCCC-ccc--cChhh
Q 037138 478 TCPHLLSLFPNIN-RLKTI-ARRFFDFMPSLTVLNLSNN-GFLTKL----RPGISKLVSLQYLNLSKTS-IRE--LPKEL 547 (806)
Q Consensus 478 ~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~~-~~~~~l----p~~i~~l~~L~~L~Ls~n~-l~~--lp~~i 547 (806)
.++.|+.|.+..+ .+... .......++.|+.|+++++ ...... +.....+.+|+.|+++++. ++. +..-.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3678888887776 33332 1234667888899988873 122211 1233456888888888876 552 22222
Q ss_pred hcCCCCcEEecCCCcccc-ccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecc-h
Q 037138 548 KALVNLKYLNLEHSRYLH-TIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKS-F 625 (806)
Q Consensus 548 ~~L~~L~~L~L~~~~~l~-~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~-~ 625 (806)
..+++|++|.+.+|..++ .--..+...+++|++|++++|..... ..+.....++++|+.|.+.... .
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d-----------~~l~~~~~~c~~l~~l~~~~~~~c 334 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD-----------SGLEALLKNCPNLRELKLLSLNGC 334 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH-----------HHHHHHHHhCcchhhhhhhhcCCC
Confidence 337888888887776322 11112245678899999887765422 1122334446666554433211 0
Q ss_pred hhHHHhhhchhhccccccceeccCCCCC--cccccccccccccceEeeccccCccccc-eeeecccCCcC-CCCc-cccC
Q 037138 626 FALQRFLSSHELQNCTKSLNLRYYDDSK--SFNIYSLADLKHLDKLDLIYCRNLEEFK-KVMIDFCIKLR-EVTW-LVFA 700 (806)
Q Consensus 626 ~~~~~~~~~~~l~~~~~~l~L~~~~~~~--~~~~~~l~~l~~L~~L~L~~~~~~~~L~-~L~l~~c~~l~-~~~~-l~~l 700 (806)
..+.. +.+....... ......+..+++|+.+.+..+. ..... .+.+.+|+.++ .+.. ....
T Consensus 335 ~~l~~-------------~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~ 400 (482)
T KOG1947|consen 335 PSLTD-------------LSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLELRLCRS 400 (482)
T ss_pred ccHHH-------------HHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHHHhccC
Confidence 00110 0000000000 1111245677888888888887 44333 56777887773 2221 1223
Q ss_pred CCcceEeeecCccc
Q 037138 701 PNLKSIHIANCHFM 714 (806)
Q Consensus 701 ~~L~~L~L~~~~~~ 714 (806)
.+|+.|+++.|...
T Consensus 401 ~~l~~L~l~~~~~~ 414 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLV 414 (482)
T ss_pred CccceEecccCccc
Confidence 33888888888763
No 234
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.76 E-value=0.062 Score=58.65 Aligned_cols=86 Identities=23% Similarity=0.257 Sum_probs=52.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC-cccHHHHHHHHHHHhCCCC-----CCCHHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIGLLE-----NRSLEERASGIF 228 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~l~ 228 (806)
.+.+|.++|.+|+||||+|..++... . ...+ .++-|++.. .....+.++.++.+++.+. ..+.........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L-~-~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF-K-KKGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-H-HcCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 46899999999999999999999877 2 2222 344454422 1233455666777766543 123333333333
Q ss_pred HHhCCCcEEEEEecCC
Q 037138 229 KILSKKKFLLLLDDVW 244 (806)
Q Consensus 229 ~~l~~k~~LlvlDdv~ 244 (806)
+...+. -++|+|..-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 344444 578888773
No 235
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.75 E-value=0.0027 Score=61.91 Aligned_cols=83 Identities=24% Similarity=0.307 Sum_probs=45.9
Q ss_pred CCccccccccccchhcc----hhHhhccCCcccEEEccCCCcccc----cC-------cccCCCCCCCEEEecCCCcc-c
Q 037138 479 CPHLLSLFPNINRLKTI----ARRFFDFMPSLTVLNLSNNGFLTK----LR-------PGISKLVSLQYLNLSKTSIR-E 542 (806)
Q Consensus 479 ~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~~~~~~~----lp-------~~i~~l~~L~~L~Ls~n~l~-~ 542 (806)
...+..++|++|.|..- ....+.+-++|++.+++.- +++. +| +.+-+|++|+..+||+|.+. +
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 34555666777654321 1222445566777777665 3332 22 23455677777777777655 3
Q ss_pred cChh----hhcCCCCcEEecCCCc
Q 037138 543 LPKE----LKALVNLKYLNLEHSR 562 (806)
Q Consensus 543 lp~~----i~~L~~L~~L~L~~~~ 562 (806)
.|+. |++-+.|.||.+++|.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC
Confidence 4432 4455667777777665
No 236
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.74 E-value=0.05 Score=57.50 Aligned_cols=154 Identities=10% Similarity=0.061 Sum_probs=92.0
Q ss_pred HHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHhhcCC---C----------------CCCCCeEEEEEeCCcccH
Q 037138 142 STLEKVWRCLGEER-VGIIGLYGMGGVGKTTLLAQINNKFLD---T----------------PNDFDVVIWVVVSKDMQL 201 (806)
Q Consensus 142 ~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~---~----------------~~~F~~~~wv~~s~~~~~ 201 (806)
..-+++.+.+..++ ...+-+.|+.|+||+|+|..++....- . ..|-|. .++.-...
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~--- 84 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLTPEKG--- 84 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecccc---
Confidence 34566777776654 557779999999999999998776520 0 112221 12210000
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHh-----CCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC---
Q 037138 202 ERIQEKIGERIGLLENRSLEERASGIFKIL-----SKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL--- 270 (806)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~--- 270 (806)
...-..++. +.+.+.+ .+++-++|+|+++.. .....+...+.. ..++.+|++|.+
T Consensus 85 -------------~~~I~idqi-R~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~ 150 (334)
T PRK07993 85 -------------KSSLGVDAV-REVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPAR 150 (334)
T ss_pred -------------cccCCHHHH-HHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence 000112221 2222222 367779999998754 334445555544 556766666655
Q ss_pred ----------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHH
Q 037138 271 ----------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALIT 321 (806)
Q Consensus 271 ----------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 321 (806)
.+.+.+++.+++.+.+....+.. .+.+..+++.++|.|..+..
T Consensus 151 lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~~~--------~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 151 LLATLRSRCRLHYLAPPPEQYALTWLSREVTMS--------QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred ChHHHHhccccccCCCCCHHHHHHHHHHccCCC--------HHHHHHHHHHcCCCHHHHHH
Confidence 78899999999998876542211 33467889999999965433
No 237
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.72 E-value=0.0064 Score=60.06 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=37.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQE 206 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 206 (806)
.-.++-|+|++|+|||++|.+++... ......++|++... ++..++.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHH
Confidence 45799999999999999999998876 23356899999875 66655544
No 238
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.71 E-value=0.063 Score=56.61 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=53.5
Q ss_pred CCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-------------ceecccCChHHHHHHHHhhhCCCccC
Q 037138 233 KKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL-------------IFKVECLRDKEAWELFLDKVGEETLD 296 (806)
Q Consensus 233 ~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~-------------~~~l~~L~~~e~~~lf~~~~~~~~~~ 296 (806)
+++-++|+|+++.. .....+...+.. ..++.+|++|.+ .+.+.+++.++..+.+... +..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~~--- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GVA--- 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CCC---
Confidence 45668899999754 345555555555 566766665554 7899999999999888764 111
Q ss_pred CCCChHHHHHHHHHHhCCchHHHHHhh
Q 037138 297 SHLDIPKLAHTLAKECGGLPLALITTG 323 (806)
Q Consensus 297 ~~~~~~~~~~~i~~~c~GlPlai~~~g 323 (806)
. ...++..++|.|..+..+.
T Consensus 207 ---~----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 207 ---D----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred ---h----HHHHHHHcCCCHHHHHHHH
Confidence 1 2335788999997554443
No 239
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.71 E-value=0.009 Score=59.78 Aligned_cols=85 Identities=27% Similarity=0.348 Sum_probs=52.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHH--------hCCCCCCCHHHH---
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGER--------IGLLENRSLEER--- 223 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~--------l~~~~~~~~~~~--- 223 (806)
.-.++.|+|.+|+|||++|.+++.... ..-..++|++.. .++...+.+ ++.. +......+..+.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERFKQ-IAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHHHH-HHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 457999999999999999999988762 234678999887 555554432 2221 111112233222
Q ss_pred HHHHHHHhCCCcEEEEEecCC
Q 037138 224 ASGIFKILSKKKFLLLLDDVW 244 (806)
Q Consensus 224 ~~~l~~~l~~k~~LlvlDdv~ 244 (806)
.+.+...++.+.-++|+|.+.
T Consensus 97 i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHhcccEEEEeCcH
Confidence 233333444566688888873
No 240
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.69 E-value=0.0037 Score=74.98 Aligned_cols=60 Identities=25% Similarity=0.381 Sum_probs=43.9
Q ss_pred CccccchHHHHHHHHHhcC-------C--CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC
Q 037138 135 PTIVGLNSTLEKVWRCLGE-------E--RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK 197 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 197 (806)
..++|.+..++.+.+.+.. . ...++.++|++|+|||++|+.+.... ...-...+.++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l---~~~~~~~i~~d~s~ 633 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL---FDDEDAMVRIDMSE 633 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---cCCCCcEEEEechh
Confidence 4589999999999888743 1 24578899999999999999999876 22223344555543
No 241
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.69 E-value=0.00099 Score=63.48 Aligned_cols=97 Identities=23% Similarity=0.296 Sum_probs=52.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKK 234 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 234 (806)
...-+.++|.+|+|||.||..+.+... ... ..+.|++ ..+++..+-..-. ...... +.+.+. +
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~--~~g-~~v~f~~------~~~L~~~l~~~~~---~~~~~~----~~~~l~-~ 108 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI--RKG-YSVLFIT------ASDLLDELKQSRS---DGSYEE----LLKRLK-R 108 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH--HTT---EEEEE------HHHHHHHHHCCHC---CTTHCH----HHHHHH-T
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc--cCC-cceeEee------cCceecccccccc---ccchhh----hcCccc-c
Confidence 346799999999999999999998872 222 3466775 3445555432111 122222 223333 2
Q ss_pred cEEEEEecCCCcc--Ccc--cccccCCC--CCCcEEEEecC
Q 037138 235 KFLLLLDDVWERI--DLT--KVGIPFPS--KNTSKVVFTTR 269 (806)
Q Consensus 235 ~~LlvlDdv~~~~--~~~--~~~~~~~~--~~~s~iivTtr 269 (806)
-=||||||+-... .|. .+...+.. .+ ..+||||.
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~-~~tIiTSN 148 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYER-KPTIITSN 148 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEES
T ss_pred ccEecccccceeeecccccccchhhhhHhhcc-cCeEeeCC
Confidence 3478899996432 221 12222222 23 36888988
No 242
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.68 E-value=0.059 Score=59.32 Aligned_cols=87 Identities=25% Similarity=0.295 Sum_probs=47.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC-cccHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHh
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIGLLE--NRSLEERASGIFKIL 231 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~l~~~l 231 (806)
...+|+|+|++|+||||++..++.... .......+..++... .......++.....++... ..+.......+. .+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la-~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~-~l 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFA-AQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE-RL 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHH-Hh
Confidence 357999999999999999999887651 122223455555421 1112222333333343322 233333333333 33
Q ss_pred CCCcEEEEEecCC
Q 037138 232 SKKKFLLLLDDVW 244 (806)
Q Consensus 232 ~~k~~LlvlDdv~ 244 (806)
.+ .-+|++|..-
T Consensus 427 ~~-~DLVLIDTaG 438 (559)
T PRK12727 427 RD-YKLVLIDTAG 438 (559)
T ss_pred cc-CCEEEecCCC
Confidence 33 4578888764
No 243
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.67 E-value=0.0069 Score=63.06 Aligned_cols=114 Identities=24% Similarity=0.242 Sum_probs=66.8
Q ss_pred cchHHHHHHHHHhcC----CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCC
Q 037138 139 GLNSTLEKVWRCLGE----ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGL 214 (806)
Q Consensus 139 gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 214 (806)
++....+...+++.+ ....-+.++|..|+|||.||.++++... ... ..+.++++ ..++..+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g-~~v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKG-VSSTLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcC-CCEEEEEH------HHHHHHHHHHHhc
Confidence 444445555555542 2456799999999999999999999982 222 34566654 3455555444421
Q ss_pred CCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCccc--ccc-cCCC--CCCcEEEEecC
Q 037138 215 LENRSLEERASGIFKILSKKKFLLLLDDVWER--IDLTK--VGI-PFPS--KNTSKVVFTTR 269 (806)
Q Consensus 215 ~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~--~~~-~~~~--~~~s~iivTtr 269 (806)
.+..+ ..+.+ .+-=||||||+... .+|.. +.. .+.. ..+..+|+||.
T Consensus 206 ---~~~~~----~l~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 206 ---GSVKE----KIDAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred ---CcHHH----HHHHh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 12222 22223 24558999999633 34432 322 2222 35678899987
No 244
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.67 E-value=0.0074 Score=70.48 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=37.9
Q ss_pred CccccchHHHHHHHHHhcC---------CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGE---------ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|-++.++.+.+.+.. .....+-++|++|+|||++|+.++...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999998887741 234578999999999999999998876
No 245
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.65 E-value=0.015 Score=61.94 Aligned_cols=119 Identities=15% Similarity=0.164 Sum_probs=73.2
Q ss_pred cccchHHHHHHHHHhcC-CCceE-EEEEccCCCCHHHHHHHHHhhcCCCCC-------------------CCCeEEEEEe
Q 037138 137 IVGLNSTLEKVWRCLGE-ERVGI-IGLYGMGGVGKTTLLAQINNKFLDTPN-------------------DFDVVIWVVV 195 (806)
Q Consensus 137 ~~gr~~~~~~l~~~l~~-~~~~v-i~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------~F~~~~wv~~ 195 (806)
++|-+....++..+..+ ++.+. +-++|++|+||||+|..+++... ... ..+.+..++.
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELL-CENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHh-CCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 56777777888877763 44555 99999999999999999999862 111 1234555555
Q ss_pred CCccc---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc--CcccccccCCC-CCCcEEEEecC
Q 037138 196 SKDMQ---LERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERI--DLTKVGIPFPS-KNTSKVVFTTR 269 (806)
Q Consensus 196 s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~--~~~~~~~~~~~-~~~s~iivTtr 269 (806)
++... ..+..+++.+...... ..++.-++++|+++... .-..+...+.. ...+.+|++|.
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~--------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESP--------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCC--------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 54443 2333333333322110 03677899999997542 23334333444 66778888777
Q ss_pred C
Q 037138 270 L 270 (806)
Q Consensus 270 ~ 270 (806)
.
T Consensus 148 ~ 148 (325)
T COG0470 148 D 148 (325)
T ss_pred C
Confidence 5
No 246
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.65 E-value=0.028 Score=54.26 Aligned_cols=46 Identities=24% Similarity=0.418 Sum_probs=37.8
Q ss_pred CccccchHHHHHHHHH----hcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRC----LGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~----l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|.|..++.+++- +......-|-+||--|+|||+|++++.+..
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 3579999888888763 334466788999999999999999999987
No 247
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.64 E-value=0.014 Score=56.69 Aligned_cols=157 Identities=17% Similarity=0.219 Sum_probs=88.9
Q ss_pred CccccchHHHHH---HHHHhcCC------CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHH
Q 037138 135 PTIVGLNSTLEK---VWRCLGEE------RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQ 205 (806)
Q Consensus 135 ~~~~gr~~~~~~---l~~~l~~~------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 205 (806)
+++||.+..+.+ |++.|.+. .++-|-.+|++|.|||-+|+++++.. +-.| +-|. ..+
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~---l~vk------at~-- 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL---LLVK------ATE-- 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce---EEec------hHH--
Confidence 457898877654 56677552 57899999999999999999999987 2222 1111 111
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHh-CCCcEEEEEecCCCc----------cCccc----ccccCC---CCCCcEEEEe
Q 037138 206 EKIGERIGLLENRSLEERASGIFKIL-SKKKFLLLLDDVWER----------IDLTK----VGIPFP---SKNTSKVVFT 267 (806)
Q Consensus 206 ~~i~~~l~~~~~~~~~~~~~~l~~~l-~~k~~LlvlDdv~~~----------~~~~~----~~~~~~---~~~~s~iivT 267 (806)
-|-+.+ .+...+..++.++- +.-++++.+|.++-. .+..+ +..-+. .+.|-..|..
T Consensus 187 -liGehV-----Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 187 -LIGEHV-----GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred -HHHHHh-----hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 121111 12233333333332 456899999988632 11111 111121 1456566666
Q ss_pred cCC--------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCc
Q 037138 268 TRL--------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGL 315 (806)
Q Consensus 268 tr~--------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 315 (806)
|.+ .++...-+++|-..++..++..-..+...+ .+.++++.+|+
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 654 566666777888888877763322111111 45566666654
No 248
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.63 E-value=0.0027 Score=65.82 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=25.1
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+..++|||++|+|||.+|+++++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999999997
No 249
>PRK06696 uridine kinase; Validated
Probab=96.59 E-value=0.0032 Score=62.84 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=35.0
Q ss_pred cchHHHHHHHHHhc---CCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 139 GLNSTLEKVWRCLG---EERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 139 gr~~~~~~l~~~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.|++.+++|.+.+. .+...+|+|.|.+|+||||+|+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 46667777777764 3578899999999999999999999886
No 250
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.57 E-value=0.0066 Score=63.06 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=56.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCC-------CCCCHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLL-------ENRSLEERASGI 227 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~~~l 227 (806)
.-+++-|+|++|+||||||.+++... ...-..++||+....++.. .+++++.. ...+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45688899999999999999988765 2234578899887766653 33444332 244556665555
Q ss_pred HHHhC-CCcEEEEEecCC
Q 037138 228 FKILS-KKKFLLLLDDVW 244 (806)
Q Consensus 228 ~~~l~-~k~~LlvlDdv~ 244 (806)
...++ +..-++|+|-|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55543 456699999875
No 251
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.011 Score=63.12 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=35.8
Q ss_pred ccccchH---HHHHHHHHhcCC---------CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 136 TIVGLNS---TLEKVWRCLGEE---------RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 136 ~~~gr~~---~~~~l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
++-|-|+ ++++|+++|.++ =++-|-++|++|.|||-||++|+...
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 4567665 567778888763 25678899999999999999999986
No 252
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0041 Score=71.12 Aligned_cols=140 Identities=16% Similarity=0.250 Sum_probs=83.4
Q ss_pred ccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCC------CeEEEEEeCCcccHHHHHHHHH
Q 037138 136 TIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDF------DVVIWVVVSKDMQLERIQEKIG 209 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F------~~~~wv~~s~~~~~~~~~~~i~ 209 (806)
.++||+++++++++.|....-.--.++|.+|||||++|.-++.+.. .+.- ..++-.+ +.
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv--~g~VP~~L~~~~i~sLD-------------~g 235 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIV--NGDVPESLKDKRIYSLD-------------LG 235 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHh--cCCCCHHHcCCEEEEec-------------HH
Confidence 3799999999999999664333345689999999999888888752 1111 1111111 11
Q ss_pred HHh-CCCCCCCHHHHHHHHHHHhC-CCcEEEEEecCCCccCc-------ccccccC-CC-CCC--cEEEEecCC------
Q 037138 210 ERI-GLLENRSLEERASGIFKILS-KKKFLLLLDDVWERIDL-------TKVGIPF-PS-KNT--SKVVFTTRL------ 270 (806)
Q Consensus 210 ~~l-~~~~~~~~~~~~~~l~~~l~-~k~~LlvlDdv~~~~~~-------~~~~~~~-~~-~~~--s~iivTtr~------ 270 (806)
.-. +.....+.+++.+.+.+.++ .++++|++|.+.....- -+..+.+ |. ..| -.|-.||-+
T Consensus 236 ~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~i 315 (786)
T COG0542 236 SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYI 315 (786)
T ss_pred HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHh
Confidence 111 11225677777777777664 45899999998643111 1112222 22 334 344455543
Q ss_pred -----------ceecccCChHHHHHHHHhhh
Q 037138 271 -----------IFKVECLRDKEAWELFLDKV 290 (806)
Q Consensus 271 -----------~~~l~~L~~~e~~~lf~~~~ 290 (806)
++.++..+.+++..+++...
T Consensus 316 EKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 316 EKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred hhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 56677777777777665443
No 253
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.022 Score=62.16 Aligned_cols=141 Identities=16% Similarity=0.232 Sum_probs=81.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKK 234 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 234 (806)
...-|-+||++|+|||-||++|+|.. .-.| ++|... +++..-+ ..+........++.=..-
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkYV-------GESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKYV-------GESERAVRQVFQRARASA 604 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHHh-------hhHHHHHHHHHHHhhcCC
Confidence 45678899999999999999999987 3444 443321 1222111 222222222233333467
Q ss_pred cEEEEEecCCCcc-------C------cccccccCCC---CCCcEEEEecCC----------------ceecccCChHHH
Q 037138 235 KFLLLLDDVWERI-------D------LTKVGIPFPS---KNTSKVVFTTRL----------------IFKVECLRDKEA 282 (806)
Q Consensus 235 ~~LlvlDdv~~~~-------~------~~~~~~~~~~---~~~s~iivTtr~----------------~~~l~~L~~~e~ 282 (806)
+++|+||+++... . ..++..-+.. ..|--||-.|.. ...+..-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 9999999997421 1 1122222211 345555655543 566777888888
Q ss_pred HHHHHhhhC--CCccCCCCChHHHHHHHHHHhCCch
Q 037138 283 WELFLDKVG--EETLDSHLDIPKLAHTLAKECGGLP 316 (806)
Q Consensus 283 ~~lf~~~~~--~~~~~~~~~~~~~~~~i~~~c~GlP 316 (806)
.++++.... +.....+-++.++|+. .+|.|.-
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 999988775 3333444567777654 3555543
No 254
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.54 E-value=0.011 Score=59.74 Aligned_cols=88 Identities=24% Similarity=0.305 Sum_probs=53.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCC----CCCeEEEEEeCCcccHHHHHHHHHHHhCCCC-----------CCC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPN----DFDVVIWVVVSKDMQLERIQEKIGERIGLLE-----------NRS 219 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----------~~~ 219 (806)
.-.++.|+|.+|+|||++|.+++-.. .... ....++|++....++..++.+ +++..+... ..+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCC
Confidence 45799999999999999999997553 1111 136899999888777655433 333332211 222
Q ss_pred HHHH---HHHHHHHhC-C-CcEEEEEecCC
Q 037138 220 LEER---ASGIFKILS-K-KKFLLLLDDVW 244 (806)
Q Consensus 220 ~~~~---~~~l~~~l~-~-k~~LlvlDdv~ 244 (806)
.++. ...+...+. . +.-++|+|-+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 3332 233444443 3 55688888874
No 255
>PRK10867 signal recognition particle protein; Provisional
Probab=96.54 E-value=0.1 Score=56.79 Aligned_cols=88 Identities=17% Similarity=0.258 Sum_probs=49.7
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccH--HHHHHHHHHHhCCCC-----CCCHHHHHHH
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQL--ERIQEKIGERIGLLE-----NRSLEERASG 226 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~-----~~~~~~~~~~ 226 (806)
..+.+|.++|++|+||||.|..++.... .. .-..++.|+. +.+.. .+-++..++..+.+. ..+.......
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~-~~-~G~kV~lV~~-D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~ 174 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLK-KK-KKKKVLLVAA-DVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKA 174 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH-Hh-cCCcEEEEEc-cccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHH
Confidence 3478999999999999999988887662 11 1223444543 23332 233444555555432 2344454444
Q ss_pred HHHHhCCCcE-EEEEecCC
Q 037138 227 IFKILSKKKF-LLLLDDVW 244 (806)
Q Consensus 227 l~~~l~~k~~-LlvlDdv~ 244 (806)
..+..+.+.+ ++|+|-.-
T Consensus 175 a~~~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 175 ALEEAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHHHHhcCCCEEEEeCCC
Confidence 4443444444 67777653
No 256
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.53 E-value=0.013 Score=55.17 Aligned_cols=40 Identities=28% Similarity=0.463 Sum_probs=30.9
Q ss_pred EEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCccc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQ 200 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 200 (806)
++.|+|.+|+||||++..+.... ...-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcchH
Confidence 46899999999999999999887 22345678887765543
No 257
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.47 E-value=0.0098 Score=61.77 Aligned_cols=83 Identities=17% Similarity=0.166 Sum_probs=56.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC-------CCCHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE-------NRSLEERASGI 227 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~l 227 (806)
.-+++-|+|++|+||||||.++.... ...-..++||+....++.. .+++++... ..+.++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45799999999999999999987776 2233567899877766553 344444321 44556665555
Q ss_pred HHHhC-CCcEEEEEecCCC
Q 037138 228 FKILS-KKKFLLLLDDVWE 245 (806)
Q Consensus 228 ~~~l~-~k~~LlvlDdv~~ 245 (806)
...++ +..-++|+|.|-.
T Consensus 126 ~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHhhccCCcEEEEcchhh
Confidence 55553 4567999999853
No 258
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.44 E-value=0.014 Score=59.34 Aligned_cols=89 Identities=28% Similarity=0.292 Sum_probs=54.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCC---CCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC-----------CCCH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLD---TPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE-----------NRSL 220 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----------~~~~ 220 (806)
.-.+.=|+|.+|+|||.||.+++-...- ..+.=..++||+-...|...++. +|++..+... ..+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 3468889999999999999888755311 11222479999999889888775 4566544321 2333
Q ss_pred HHHHHH---HHHHh-CCCcEEEEEecCC
Q 037138 221 EERASG---IFKIL-SKKKFLLLLDDVW 244 (806)
Q Consensus 221 ~~~~~~---l~~~l-~~k~~LlvlDdv~ 244 (806)
++.... +...+ ..+--|||+|.+-
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHhhccccceEEEEecchH
Confidence 333332 22333 2344588888873
No 259
>PRK04296 thymidine kinase; Provisional
Probab=96.44 E-value=0.0033 Score=60.85 Aligned_cols=107 Identities=18% Similarity=0.050 Sum_probs=58.8
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHhC
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE----NRSLEERASGIFKILS 232 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~l~~~l~ 232 (806)
.++.|+|+.|.||||+|..+..+. ..+-..++.+. ..++.......++++++... .....+..+.+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~---~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY---EERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH---HHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 477899999999999999998886 22233344442 11121222233445554322 1233444444444 33
Q ss_pred CCcEEEEEecCCCc--cCcccccccCCCCCCcEEEEecCC
Q 037138 233 KKKFLLLLDDVWER--IDLTKVGIPFPSKNTSKVVFTTRL 270 (806)
Q Consensus 233 ~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~s~iivTtr~ 270 (806)
++.-+||+|.+.-. ++..++...+ ...|..||+|.+.
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l-~~~g~~vi~tgl~ 115 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL-DDLGIPVICYGLD 115 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH-HHcCCeEEEEecC
Confidence 45568999999532 1122221111 1467889999886
No 260
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.44 E-value=0.015 Score=58.89 Aligned_cols=75 Identities=28% Similarity=0.330 Sum_probs=46.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKK 234 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 234 (806)
...-+.++|.+|+|||.||.++.+... ..--.+.++++ .++..++...... .. ....+.+.+ .+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~---~~g~sv~f~~~------~el~~~Lk~~~~~---~~---~~~~l~~~l-~~ 167 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL---KAGISVLFITA------PDLLSKLKAAFDE---GR---LEEKLLREL-KK 167 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEEEH------HHHHHHHHHHHhc---Cc---hHHHHHHHh-hc
Confidence 677899999999999999999999982 22234566653 4555555544432 11 111222222 22
Q ss_pred cEEEEEecCCC
Q 037138 235 KFLLLLDDVWE 245 (806)
Q Consensus 235 ~~LlvlDdv~~ 245 (806)
-=||||||+-.
T Consensus 168 ~dlLIiDDlG~ 178 (254)
T COG1484 168 VDLLIIDDIGY 178 (254)
T ss_pred CCEEEEecccC
Confidence 34899999964
No 261
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.011 Score=59.37 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=50.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcC-CCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCC
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFL-DTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKK 234 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 234 (806)
-++|-++|++|.|||+|+++++++.. +..+.+....-+.++. ..++.+.. ...++-...+-+++.+.+.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWF----sESgKlV~kmF~kI~ELv~d~ 248 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWF----SESGKLVAKMFQKIQELVEDR 248 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHH----hhhhhHHHHHHHHHHHHHhCC
Confidence 47899999999999999999999872 2223444444444322 22222222 222344555566667767655
Q ss_pred c--EEEEEecCCC
Q 037138 235 K--FLLLLDDVWE 245 (806)
Q Consensus 235 ~--~LlvlDdv~~ 245 (806)
. +.+.+|+|.+
T Consensus 249 ~~lVfvLIDEVES 261 (423)
T KOG0744|consen 249 GNLVFVLIDEVES 261 (423)
T ss_pred CcEEEEEeHHHHH
Confidence 4 4577898854
No 262
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.42 E-value=0.0034 Score=57.24 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=31.4
Q ss_pred ccchHHHHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 138 VGLNSTLEKVWRCLGE--ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 138 ~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
||.-..++++.+.+.. .....|.|.|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4666667777666643 344567889999999999999999876
No 263
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.42 E-value=0.15 Score=55.21 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+|.++|++|+||||+|..++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998776
No 264
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.39 E-value=0.0069 Score=57.96 Aligned_cols=36 Identities=25% Similarity=0.454 Sum_probs=29.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEE
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWV 193 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv 193 (806)
...+|.+.|+.|+||||+|+.++... ...+..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 45699999999999999999999987 3445555555
No 265
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.37 E-value=0.0087 Score=61.22 Aligned_cols=129 Identities=15% Similarity=0.193 Sum_probs=72.4
Q ss_pred cchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEE----EeCCcc-----c----HHHHH
Q 037138 139 GLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWV----VVSKDM-----Q----LERIQ 205 (806)
Q Consensus 139 gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv----~~s~~~-----~----~~~~~ 205 (806)
+|..+..--+++|.++++..|.+.|.+|.|||.||-+..-...-.++.|..++-. .++++. . +.--.
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWm 307 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWM 307 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchH
Confidence 4666666677888999999999999999999999877654432234555544322 133321 1 11122
Q ss_pred HHHHHHh---CCCCCCCHHHHHHHHH----------HHhCCC---cEEEEEecCCCccCcccccccCCC-CCCcEEEEec
Q 037138 206 EKIGERI---GLLENRSLEERASGIF----------KILSKK---KFLLLLDDVWERIDLTKVGIPFPS-KNTSKVVFTT 268 (806)
Q Consensus 206 ~~i~~~l---~~~~~~~~~~~~~~l~----------~~l~~k---~~LlvlDdv~~~~~~~~~~~~~~~-~~~s~iivTt 268 (806)
+.|...+ ....... ....+.+. .+.+|+ +-++|+|+..+.. -.++...+.. +.||||+.|-
T Consensus 308 q~i~DnLE~L~~~~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT-pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 308 QAIFDNLEVLFSPNEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT-PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred HHHHhHHHHHhcccccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC-HHHHHHHHHhccCCCEEEEcC
Confidence 2332222 1111111 22222221 223444 4589999997632 2233344555 8999999886
Q ss_pred C
Q 037138 269 R 269 (806)
Q Consensus 269 r 269 (806)
-
T Consensus 386 d 386 (436)
T COG1875 386 D 386 (436)
T ss_pred C
Confidence 5
No 266
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.34 E-value=0.09 Score=55.32 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=22.9
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-...+.++|+.|+||||+|+.++...
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHH
Confidence 335568899999999999999998875
No 267
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.32 E-value=0.0089 Score=66.47 Aligned_cols=73 Identities=25% Similarity=0.335 Sum_probs=55.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhC--
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILS-- 232 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~-- 232 (806)
.-++.-++|++|.||||||+-++++. .| .++=|++|+..+...+-..|...+... ..+.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~-------------s~l~ad 385 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNH-------------SVLDAD 385 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhc-------------cccccC
Confidence 46799999999999999999999875 23 477889999888877766665544322 2332
Q ss_pred CCcEEEEEecCCCc
Q 037138 233 KKKFLLLLDDVWER 246 (806)
Q Consensus 233 ~k~~LlvlDdv~~~ 246 (806)
+++.-||+|+++..
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 67889999999753
No 268
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.32 E-value=0.035 Score=55.20 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=33.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCccc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQ 200 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 200 (806)
.-.++.|.|.+|+||||+|.+++... ...-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCCH
Confidence 46789999999999999999998876 22234678887655543
No 269
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.30 E-value=0.0021 Score=72.79 Aligned_cols=114 Identities=25% Similarity=0.189 Sum_probs=77.2
Q ss_pred hccCCcccEEEccCCCcccc--cCcccCCCCCCCEEEecCC--Ccccc----ChhhhcCCCCcEEecCCCccccccc-cc
Q 037138 500 FDFMPSLTVLNLSNNGFLTK--LRPGISKLVSLQYLNLSKT--SIREL----PKELKALVNLKYLNLEHSRYLHTIP-RQ 570 (806)
Q Consensus 500 ~~~l~~L~~L~Ls~~~~~~~--lp~~i~~l~~L~~L~Ls~n--~l~~l----p~~i~~L~~L~~L~L~~~~~l~~lp-~~ 570 (806)
...++.|+.|.+.++..+.. +-.....+++|+.|+++++ .+... +.....+++|+.|+++++..++..- ..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 44588999999998855554 3346677899999999973 22221 2344567999999999987433322 12
Q ss_pred cccCCCCCcEEEeecccC-CCCCCCCccccCCccchHHHhcCCCCCCeeeEEecch
Q 037138 571 LICSFSMLHVLRMVNCDY-SGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSF 625 (806)
Q Consensus 571 ~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 625 (806)
+...+++|++|.+.+|.. +. ..+......+++|+.|+++.+..
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~------------~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTD------------EGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHhhCCCcceEccCCCCccch------------hHHHHHHHhcCcccEEeeecCcc
Confidence 123488999999877763 32 23344556788899999986654
No 270
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.28 E-value=0.03 Score=51.70 Aligned_cols=110 Identities=22% Similarity=0.147 Sum_probs=61.6
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC---cccHHHHHHHHHHHh-----CCCC---CCCHHH---
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK---DMQLERIQEKIGERI-----GLLE---NRSLEE--- 222 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~~~l-----~~~~---~~~~~~--- 222 (806)
..|-|++..|.||||+|...+-+. ..+=-.+.+|.+-+ ...-..+++.+ ..+ +... ..+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra---~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA---LGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHH
Confidence 578899999999999999988876 22223455554432 23334444333 000 0000 111111
Q ss_pred ----HHHHHHHHhCC-CcEEEEEecCCCc-----cCcccccccCCC-CCCcEEEEecCC
Q 037138 223 ----RASGIFKILSK-KKFLLLLDDVWER-----IDLTKVGIPFPS-KNTSKVVFTTRL 270 (806)
Q Consensus 223 ----~~~~l~~~l~~-k~~LlvlDdv~~~-----~~~~~~~~~~~~-~~~s~iivTtr~ 270 (806)
..+..++.+.. .-=|||||++-.. .+.+.+...+.. ..+..||+|.|.
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~ 137 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRN 137 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCC
Confidence 11223344444 4459999998532 344445555555 567899999995
No 271
>PRK09354 recA recombinase A; Provisional
Probab=96.28 E-value=0.015 Score=60.92 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=57.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC-------CCCHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE-------NRSLEERASGI 227 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~l 227 (806)
.-+++-|+|++|+||||||.++.... ...-..++||+....++.. .+++++... ..+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45688899999999999999988776 2334678999988777753 344444321 44556665555
Q ss_pred HHHhC-CCcEEEEEecCCC
Q 037138 228 FKILS-KKKFLLLLDDVWE 245 (806)
Q Consensus 228 ~~~l~-~k~~LlvlDdv~~ 245 (806)
...++ +..-++|+|-|-.
T Consensus 131 ~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHHhhcCCCCEEEEeChhh
Confidence 55553 4566999999853
No 272
>PRK08233 hypothetical protein; Provisional
Probab=96.27 E-value=0.014 Score=56.24 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=23.1
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+|+|.|++|+||||+|+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999999876
No 273
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.035 Score=59.52 Aligned_cols=135 Identities=21% Similarity=0.223 Sum_probs=77.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKK 234 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k 234 (806)
....+.+.|++|+|||+||.+++... .|..+--++-.+- ++...............+..+..
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiSpe~m-------------iG~sEsaKc~~i~k~F~DAYkS~ 598 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS-----DFPFVKIISPEDM-------------IGLSESAKCAHIKKIFEDAYKSP 598 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc-----CCCeEEEeChHHc-------------cCccHHHHHHHHHHHHHHhhcCc
Confidence 56678899999999999999998764 6664433321110 11111111112222333445667
Q ss_pred cEEEEEecCCCccCcccccccC------------CC--CCCcEEE-EecCC----------------ceecccCCh-HHH
Q 037138 235 KFLLLLDDVWERIDLTKVGIPF------------PS--KNTSKVV-FTTRL----------------IFKVECLRD-KEA 282 (806)
Q Consensus 235 ~~LlvlDdv~~~~~~~~~~~~~------------~~--~~~s~ii-vTtr~----------------~~~l~~L~~-~e~ 282 (806)
--.||+||+....+|-.++..+ .. ..|-|.+ ++|.+ .|+++.++. ++.
T Consensus 599 lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~ 678 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQL 678 (744)
T ss_pred ceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHH
Confidence 7799999998777776554332 22 3444443 33333 678888876 666
Q ss_pred HHHHHhhh-CCCccCCCCChHHHHHHHHHHh
Q 037138 283 WELFLDKV-GEETLDSHLDIPKLAHTLAKEC 312 (806)
Q Consensus 283 ~~lf~~~~-~~~~~~~~~~~~~~~~~i~~~c 312 (806)
.+.++..- +. +.+...++++...+|
T Consensus 679 ~~vl~~~n~fs-----d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 679 LEVLEELNIFS-----DDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHccCCC-----cchhHHHHHHHhccc
Confidence 66665542 22 223455566666655
No 274
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.25 E-value=0.0052 Score=67.60 Aligned_cols=45 Identities=24% Similarity=0.412 Sum_probs=40.2
Q ss_pred ccccchHHHHHHHHHh------cCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 136 TIVGLNSTLEKVWRCL------GEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+++|.++.+++|++.| .+..-+++.++|++|+||||||+.+++-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 5799999999999988 23567899999999999999999999976
No 275
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.11 Score=57.96 Aligned_cols=96 Identities=20% Similarity=0.264 Sum_probs=61.2
Q ss_pred ccccchHHHHHHHHHhcC------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHH
Q 037138 136 TIVGLNSTLEKVWRCLGE------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIG 209 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 209 (806)
+=+|.++.+++|++++.- -+-++++.+|++|||||.+|+.++.-.- +++| -++|+.-.|..+|-..=-
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkFf----RfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKFF----RFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--CceE----EEeccccccHHhhcccce
Confidence 348999999999998842 3568999999999999999999999872 3333 234444444444422110
Q ss_pred HHhCCCCCCCHHHHHHHHHHHh---CCCcEEEEEecCCC
Q 037138 210 ERIGLLENRSLEERASGIFKIL---SKKKFLLLLDDVWE 245 (806)
Q Consensus 210 ~~l~~~~~~~~~~~~~~l~~~l---~~k~~LlvlDdv~~ 245 (806)
.. ...+..++-+.| +...-|+.+|+|+.
T Consensus 486 TY--------VGAMPGkiIq~LK~v~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 486 TY--------VGAMPGKIIQCLKKVKTENPLILIDEVDK 516 (906)
T ss_pred ee--------eccCChHHHHHHHhhCCCCceEEeehhhh
Confidence 01 111112233333 44566889999964
No 276
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.22 E-value=0.051 Score=53.60 Aligned_cols=195 Identities=12% Similarity=0.162 Sum_probs=112.7
Q ss_pred ccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCC---CCCCCCeEEEEEeCC----------cc---
Q 037138 136 TIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLD---TPNDFDVVIWVVVSK----------DM--- 199 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~~F~~~~wv~~s~----------~~--- 199 (806)
.+.++++...++.......+.+..-++|+.|.||-|.+..+.+..-. .+-.-+..-|.+-|. ++
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 35677877788877777678899999999999999988777665411 111223344443222 11
Q ss_pred --------cHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcE-EEEEecCCCc--cCcccccccCCC-CCCcEEEEe
Q 037138 200 --------QLERIQEKIGERIGLLENRSLEERASGIFKILSKKKF-LLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFT 267 (806)
Q Consensus 200 --------~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~-LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivT 267 (806)
.-.-+.++|++++.-.. .+. .-..+.| ++|+-.+++. +....++..... .+.+|+|+.
T Consensus 94 itPSDaG~~DRvViQellKevAQt~---------qie-~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~ 163 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQ---------QIE-TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILV 163 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhc---------chh-hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEE
Confidence 11223333333332110 000 0112333 5666666532 222333333333 455666653
Q ss_pred cCC-------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch-HHHHHhh---hc-----
Q 037138 268 TRL-------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP-LALITTG---LG----- 325 (806)
Q Consensus 268 tr~-------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~~g---~~----- 325 (806)
-.+ .+++...+++|-...+++.+..+....+ .+++..|+++++|.- -|+-++- +.
T Consensus 164 cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~ 240 (351)
T KOG2035|consen 164 CNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFT 240 (351)
T ss_pred ecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhcccccc
Confidence 322 7899999999999999998866553333 789999999999864 4443332 11
Q ss_pred ---CCCCHHHHHHHHHHHhhc
Q 037138 326 ---CKKSQEEWSYAIEILRRS 343 (806)
Q Consensus 326 ---~~~~~~~w~~~l~~l~~~ 343 (806)
..-..-+|+-++......
T Consensus 241 a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 241 ANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred ccCCCCCCccHHHHHHHHHHH
Confidence 112446899887766554
No 277
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.20 E-value=0.0053 Score=59.86 Aligned_cols=105 Identities=12% Similarity=0.131 Sum_probs=56.5
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE-RIQEKIGERIGLLENRSLEERASGIFKILSKKK 235 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~ 235 (806)
++|.|+|+.|+||||++..+.... .......++.- .++.... .-...+..+-.. ..+.....+.++..+...+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~v--g~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTI-EDPIEFVHESKRSLINQREV--GLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEE-cCCccccccCccceeeeccc--CCCccCHHHHHHHHhcCCc
Confidence 578999999999999999887765 22333343332 2211100 000011111100 1122334556777777777
Q ss_pred EEEEEecCCCccCcccccccCCCCCCcEEEEecC
Q 037138 236 FLLLLDDVWERIDLTKVGIPFPSKNTSKVVFTTR 269 (806)
Q Consensus 236 ~LlvlDdv~~~~~~~~~~~~~~~~~~s~iivTtr 269 (806)
=.+++|++.+.+....+.... ..|..++.|+.
T Consensus 76 d~ii~gEird~e~~~~~l~~a--~~G~~v~~t~H 107 (198)
T cd01131 76 DVILVGEMRDLETIRLALTAA--ETGHLVMSTLH 107 (198)
T ss_pred CEEEEcCCCCHHHHHHHHHHH--HcCCEEEEEec
Confidence 899999997665444322211 33555666654
No 278
>PRK06547 hypothetical protein; Provisional
Probab=96.17 E-value=0.0075 Score=57.03 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=28.5
Q ss_pred HHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 147 VWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 147 l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+...+......+|+|.|++|+||||+|+.+....
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444556788999999999999999999998875
No 279
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.2 Score=48.47 Aligned_cols=151 Identities=15% Similarity=0.224 Sum_probs=85.5
Q ss_pred ccc-chHHHHHHHHHhc-------------CCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH
Q 037138 137 IVG-LNSTLEKVWRCLG-------------EERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE 202 (806)
Q Consensus 137 ~~g-r~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 202 (806)
++| .+..+++|.+.+. =.+++-+.++|++|.|||-||++|+++. ..-|+.||..
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs---- 215 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS---- 215 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH----
Confidence 454 4666666666552 1357778899999999999999999986 2455667643
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHh----CCCcEEEEEecCCCcc----------Ccc------cccccCC---CC
Q 037138 203 RIQEKIGERIGLLENRSLEERASGIFKIL----SKKKFLLLLDDVWERI----------DLT------KVGIPFP---SK 259 (806)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l----~~k~~LlvlDdv~~~~----------~~~------~~~~~~~---~~ 259 (806)
++.+..+ .+....+++.+ ..-+-++++|++++.. +-+ ++...+. ..
T Consensus 216 elvqk~i-----------gegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 216 ELVQKYI-----------GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred HHHHHHh-----------hhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc
Confidence 2222211 11112222221 3457889999987531 100 1112222 14
Q ss_pred CCcEEEEecCC----------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHH
Q 037138 260 NTSKVVFTTRL----------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAK 310 (806)
Q Consensus 260 ~~s~iivTtr~----------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~ 310 (806)
++-+||..|.. .++..+-+++.-.++++-+...-+.....++..+|+++..
T Consensus 285 knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~g 351 (404)
T KOG0728|consen 285 KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPG 351 (404)
T ss_pred cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCC
Confidence 56677777754 5666666666666677655433332233455666655543
No 280
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.16 E-value=0.053 Score=62.95 Aligned_cols=138 Identities=14% Similarity=0.081 Sum_probs=74.2
Q ss_pred ccccchHHHHHHHHHh---cC---------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHH
Q 037138 136 TIVGLNSTLEKVWRCL---GE---------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLER 203 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~ 203 (806)
++.|.+..++++.+.+ .+ .-.+-|.++|++|+|||++|+.++... ...| +.++.++
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~~------ 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSD------ 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehHH------
Confidence 4567766665554433 22 113458999999999999999999876 2232 2222221
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCccC----------------cccccccCCC---CCCcEE
Q 037138 204 IQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERID----------------LTKVGIPFPS---KNTSKV 264 (806)
Q Consensus 204 ~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~----------------~~~~~~~~~~---~~~s~i 264 (806)
+... .. ..........+...-...+.+|++|+++.... +..+...+.. ..+.-|
T Consensus 221 ~~~~----~~---g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~viv 293 (644)
T PRK10733 221 FVEM----FV---GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV 293 (644)
T ss_pred hHHh----hh---cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeE
Confidence 1110 00 11111222223333345788999999965310 0111111111 234455
Q ss_pred EEecCC----------------ceecccCChHHHHHHHHhhhCC
Q 037138 265 VFTTRL----------------IFKVECLRDKEAWELFLDKVGE 292 (806)
Q Consensus 265 ivTtr~----------------~~~l~~L~~~e~~~lf~~~~~~ 292 (806)
|.||.. .+.+...+.++-.++++.+...
T Consensus 294 IaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 294 IAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred EEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 556654 5667777777777888776644
No 281
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.16 E-value=0.014 Score=52.78 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=34.3
Q ss_pred EEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCC
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLL 215 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 215 (806)
+|.|.|++|+||||+|+.++++. .-.| | +.-.++++|++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~-----v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKL-----V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCce-----e------eccHHHHHHHHHcCCC
Confidence 68999999999999999999987 1111 1 3346889999888764
No 282
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.055 Score=61.75 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=93.8
Q ss_pred CccccchHHHHHHH---HHhcCC---------CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH
Q 037138 135 PTIVGLNSTLEKVW---RCLGEE---------RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE 202 (806)
Q Consensus 135 ~~~~gr~~~~~~l~---~~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 202 (806)
.++.|-|+.+++|. ++|.++ -++=+-++|++|+|||-||++++... . +=|+++|-.
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-g-------VPF~svSGS---- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G-------VPFFSVSGS---- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-C-------CceeeechH----
Confidence 35678877665554 455542 35678899999999999999999986 2 233444422
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHh-CCCcEEEEEecCCCccC-----------------cccccccCCC-CCCc-
Q 037138 203 RIQEKIGERIGLLENRSLEERASGIFKIL-SKKKFLLLLDDVWERID-----------------LTKVGIPFPS-KNTS- 262 (806)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-~~k~~LlvlDdv~~~~~-----------------~~~~~~~~~~-~~~s- 262 (806)
+.++.+... -..+.+.+...- ...+.++.+|+++...- +.++..-+.. ..++
T Consensus 379 ----EFvE~~~g~----~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 ----EFVEMFVGV----GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred ----HHHHHhccc----chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 111111110 022222233222 35688999998864211 1222111211 1222
Q ss_pred EE-EEecCC----------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHH
Q 037138 263 KV-VFTTRL----------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLAL 319 (806)
Q Consensus 263 ~i-ivTtr~----------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 319 (806)
.| +-+|+. .+.++.-+..+-.++|..++..-... .+..++++ |+...-|.+=|.
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 33 334443 67888888889999999888654322 34456666 888888887654
No 283
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.15 E-value=0.017 Score=69.28 Aligned_cols=46 Identities=24% Similarity=0.379 Sum_probs=37.5
Q ss_pred CccccchHHHHHHHHHhcC-------C--CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGE-------E--RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|-+..++.+.+.+.. . ....+.++|+.|+|||+||+.+++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 5689999999999887742 1 23567799999999999999999876
No 284
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.14 E-value=0.024 Score=58.60 Aligned_cols=86 Identities=26% Similarity=0.337 Sum_probs=47.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCc-ccHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHh
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGLLE--NRSLEERASGIFKIL 231 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~--~~~~~~~~~~l~~~l 231 (806)
...+|+|+|++|+||||++..++... .....-..+..|+.... ......+......++.+. ..+.....+.+.. +
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~-~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF-VLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-L 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-c
Confidence 45799999999999999999998876 21111124566654321 122233333444444433 3344444433333 3
Q ss_pred CCCcEEEEEecC
Q 037138 232 SKKKFLLLLDDV 243 (806)
Q Consensus 232 ~~k~~LlvlDdv 243 (806)
.+ .=+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 33 347777753
No 285
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.14 E-value=0.0024 Score=37.14 Aligned_cols=19 Identities=32% Similarity=0.733 Sum_probs=9.8
Q ss_pred CCEEEecCCCccccChhhh
Q 037138 530 LQYLNLSKTSIRELPKELK 548 (806)
Q Consensus 530 L~~L~Ls~n~l~~lp~~i~ 548 (806)
|++|+|++|.++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 286
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.13 E-value=0.032 Score=58.26 Aligned_cols=89 Identities=19% Similarity=0.220 Sum_probs=56.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCC---CCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC-----------CCCH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDT---PNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE-----------NRSL 220 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----------~~~~ 220 (806)
.-+++-|+|++|+|||+++.+++-..... ...=..++||+....|+++++.+ ++++++... ..+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 45788899999999999999877533110 11124789999999888888754 566655431 1233
Q ss_pred HHHHH---HHHHHh-CCCcEEEEEecCC
Q 037138 221 EERAS---GIFKIL-SKKKFLLLLDDVW 244 (806)
Q Consensus 221 ~~~~~---~l~~~l-~~k~~LlvlDdv~ 244 (806)
++..+ .+...+ .++--|||+|.+-
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 33332 233333 2344578888874
No 287
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.041 Score=56.83 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=32.7
Q ss_pred ccccchHHHHHHHHHhcC------------CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 136 TIVGLNSTLEKVWRCLGE------------ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
++.|.++.++-|.++..- ..-+-|..+|++|.|||-||++|+..-
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 355666655555544311 245678899999999999999999986
No 288
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.08 E-value=0.033 Score=58.67 Aligned_cols=89 Identities=21% Similarity=0.205 Sum_probs=55.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcC-CC--CCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC-----------CCCH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFL-DT--PNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE-----------NRSL 220 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~--~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----------~~~~ 220 (806)
.-+++-|+|.+|+|||+|+.+++-... .. ...-..++||+....|.+.++.+ +++.++... ..+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 456888999999999999999864331 10 11224789999999999888755 556655431 2333
Q ss_pred HHHHHH---HHHHh-CCCcEEEEEecCC
Q 037138 221 EERASG---IFKIL-SKKKFLLLLDDVW 244 (806)
Q Consensus 221 ~~~~~~---l~~~l-~~k~~LlvlDdv~ 244 (806)
++.... +...+ ..+--|||+|.+-
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 333222 22233 2334578888874
No 289
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.07 E-value=0.017 Score=56.46 Aligned_cols=82 Identities=28% Similarity=0.402 Sum_probs=54.2
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcc-cHHHHHHHHHHHhCCCC--------CCCHHH----
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDM-QLERIQEKIGERIGLLE--------NRSLEE---- 222 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~~---- 222 (806)
-.-++|.|.+|+|||+|+..+.+.. .-+.++++.+++.. .+.++.+++...-.... ......
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 3578999999999999999999986 13445888887653 56666666644311111 222211
Q ss_pred ------HHHHHHHHhCCCcEEEEEecCC
Q 037138 223 ------RASGIFKILSKKKFLLLLDDVW 244 (806)
Q Consensus 223 ------~~~~l~~~l~~k~~LlvlDdv~ 244 (806)
.++.++. +++.+|+++||+-
T Consensus 90 ~~~a~t~AEyfrd--~G~dVlli~Dslt 115 (215)
T PF00006_consen 90 PYTALTIAEYFRD--QGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHH--TTSEEEEEEETHH
T ss_pred hccchhhhHHHhh--cCCceeehhhhhH
Confidence 2233333 7999999999983
No 290
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.06 E-value=0.022 Score=54.82 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
||.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999876
No 291
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.06 E-value=0.042 Score=62.14 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=44.8
Q ss_pred CccccchHHHHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCc
Q 037138 135 PTIVGLNSTLEKVWRCLGE--ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKD 198 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 198 (806)
..++|+...+.++.+.+.. ..-.-|-|+|..|+|||++|+.+++...+ .-...+.|+++.-
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r---~~~p~v~v~c~~~ 249 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR---ADKPLVYLNCAAL 249 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc---CCCCeEEEEcccC
Confidence 4689999999888887743 34557889999999999999999987521 2223455665543
No 292
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.05 E-value=0.0068 Score=54.63 Aligned_cols=25 Identities=44% Similarity=0.510 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..-|+|.|++|+||||+++.+.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3468999999999999999999987
No 293
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.05 E-value=0.067 Score=63.05 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=36.5
Q ss_pred ccccchHHHHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 136 TIVGLNSTLEKVWRCLGE--ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.++|+...+.++.+.+.. ..-.-|-|+|..|+|||++|+.+++..
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 589999888888766642 334578899999999999999999875
No 294
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.00 E-value=0.017 Score=55.47 Aligned_cols=111 Identities=21% Similarity=0.255 Sum_probs=62.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEE---eCCcccHHHHH------HHHHHHhCCCC-------CC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVV---VSKDMQLERIQ------EKIGERIGLLE-------NR 218 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~---~s~~~~~~~~~------~~i~~~l~~~~-------~~ 218 (806)
.-.+++|+|..|.|||||++.++... ....+.+++. +.. .+..... .++++.++... .-
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 45689999999999999999998875 2233444442 221 1222211 12445544332 11
Q ss_pred CHHH-HHHHHHHHhCCCcEEEEEecCCCccC---cccccccCCC--CC-CcEEEEecCC
Q 037138 219 SLEE-RASGIFKILSKKKFLLLLDDVWERID---LTKVGIPFPS--KN-TSKVVFTTRL 270 (806)
Q Consensus 219 ~~~~-~~~~l~~~l~~k~~LlvlDdv~~~~~---~~~~~~~~~~--~~-~s~iivTtr~ 270 (806)
+..+ ..-.+...+-..+-++++|+.-..-| .+.+...+.. .. +..||++|.+
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~ 157 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD 157 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 1112 22235556667888999999865433 2233333332 22 6678888774
No 295
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.98 E-value=0.035 Score=58.63 Aligned_cols=86 Identities=22% Similarity=0.257 Sum_probs=49.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCccc--HHHHHHHHHHHhCCCC--CCCHHHHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQ--LERIQEKIGERIGLLE--NRSLEERASGIFKI 230 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~--~~~~~~~~~~l~~~ 230 (806)
+.++|+++|++|+||||++..++... . ... ..+..++.. .+. ..+-++..++.++.+. ..+.....+.+...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L-~-~~G-kkVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~l 315 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF-H-GKK-KTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYF 315 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH-H-HcC-CcEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHH
Confidence 45799999999999999999998876 2 222 234455542 332 2233344444455443 34555555544443
Q ss_pred hCC-CcEEEEEecCC
Q 037138 231 LSK-KKFLLLLDDVW 244 (806)
Q Consensus 231 l~~-k~~LlvlDdv~ 244 (806)
-.. +.=++++|-.-
T Consensus 316 k~~~~~DvVLIDTaG 330 (436)
T PRK11889 316 KEEARVDYILIDTAG 330 (436)
T ss_pred HhccCCCEEEEeCcc
Confidence 221 23467778664
No 296
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.96 E-value=0.025 Score=53.86 Aligned_cols=84 Identities=21% Similarity=0.224 Sum_probs=44.7
Q ss_pred EEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCc-ccHHHHHHHHHHHhCCCC-----CCCHHHHH-HHHHHH
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGLLE-----NRSLEERA-SGIFKI 230 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~-~~l~~~ 230 (806)
++.++|++|+||||+++.++.... . .. ..++.++.... ....+.+...+...+.+. ..+..+.. +.+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~-~-~g-~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK-K-KG-KKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHA 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-H-CC-CcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 688999999999999999998762 1 11 23444443321 123333444444443321 23334333 233333
Q ss_pred hCCCcEEEEEecCC
Q 037138 231 LSKKKFLLLLDDVW 244 (806)
Q Consensus 231 l~~k~~LlvlDdv~ 244 (806)
..+..-++|+|..-
T Consensus 79 ~~~~~d~viiDt~g 92 (173)
T cd03115 79 REENFDVVIVDTAG 92 (173)
T ss_pred HhCCCCEEEEECcc
Confidence 34344356677654
No 297
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.21 Score=48.75 Aligned_cols=53 Identities=25% Similarity=0.369 Sum_probs=41.1
Q ss_pred ccCCCCC--CccccchHHHHHHHHHhcC-------------CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 128 VDARPVE--PTIVGLNSTLEKVWRCLGE-------------ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 128 ~~~~~~~--~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+++.|++ +++=|-++.++++++.+.= ..++-+..+|++|.|||-+|++.+...
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 4555554 3567889999999987721 246678899999999999999998765
No 298
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.91 E-value=0.037 Score=55.01 Aligned_cols=88 Identities=24% Similarity=0.198 Sum_probs=55.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC-----cccHHHHHHHHHHHhCCCC--------CCCHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK-----DMQLERIQEKIGERIGLLE--------NRSLE 221 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~--------~~~~~ 221 (806)
+-.+++|||..|+||||+++.+..-. . .-.+.++..-.+ .....+-..++++.++... .-+-.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~---~-pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE---E-PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc---C-CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 45789999999999999999998876 1 122333333211 1223344556666666443 12222
Q ss_pred HHHH-HHHHHhCCCcEEEEEecCCCc
Q 037138 222 ERAS-GIFKILSKKKFLLLLDDVWER 246 (806)
Q Consensus 222 ~~~~-~l~~~l~~k~~LlvlDdv~~~ 246 (806)
++++ .+.+.|.-++-++|.|+.-+.
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSa 139 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSA 139 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhh
Confidence 2222 366778889999999987654
No 299
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.90 E-value=0.0063 Score=54.63 Aligned_cols=22 Identities=36% Similarity=0.764 Sum_probs=20.3
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q 037138 159 IGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~ 180 (806)
|+|.|++|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998873
No 300
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.88 E-value=0.017 Score=61.19 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=36.7
Q ss_pred CccccchHHHHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGE--ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|+...+.++.+.+.. ..-.-|.|+|..|+||+++|+.++...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s 53 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC
Confidence 3589999988888887743 334567789999999999999998754
No 301
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.055 Score=60.81 Aligned_cols=92 Identities=17% Similarity=0.209 Sum_probs=60.2
Q ss_pred CccccchHHHHHHHHHhcC------------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH
Q 037138 135 PTIVGLNSTLEKVWRCLGE------------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE 202 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 202 (806)
.++=|-++.+.+|.+-+.- .+.+=|-++|++|+|||-+|++|+... . ..|++|..+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---s-----L~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---S-----LNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---e-----eeEEeecCH----
Confidence 3456788888888886632 146678899999999999999999987 1 334444332
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCC
Q 037138 203 RIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWE 245 (806)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~ 245 (806)
+++..-+ +.+++...+...+.=..++++|.||++++
T Consensus 740 ELLNMYV-------GqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ELLNMYV-------GQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHHHh-------cchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 1211111 23333333333444457899999999975
No 302
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.86 E-value=0.62 Score=49.59 Aligned_cols=59 Identities=17% Similarity=0.249 Sum_probs=39.8
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcc--cHHHHHHHHHHHhCCCC
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDM--QLERIQEKIGERIGLLE 216 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~ 216 (806)
..+.||-.+|.-|.||||-|-.+++... . .....-+...+.+ ..-+-++.++.+.+.+.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lk---k-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLK---K-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHH---H-cCCceEEEecccCChHHHHHHHHHHHHcCCce
Confidence 3578999999999999999999999882 2 2223333333333 34455677777776544
No 303
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.86 E-value=0.035 Score=55.57 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=25.0
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
....+|+|.|++|+|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 568899999999999999999999876
No 304
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.85 E-value=0.029 Score=59.63 Aligned_cols=87 Identities=21% Similarity=0.272 Sum_probs=50.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC-cccHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHh
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIGLLE--NRSLEERASGIFKIL 231 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~l~~~l 231 (806)
.-.++.++|+.|+||||++.++..... .......+..++... .....+-++...+.++.+. ..+..+....+ ..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l-~~l 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL-AEL 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH-HHh
Confidence 356999999999999999999998751 111123455565322 2234455555666666543 22222333333 334
Q ss_pred CCCcEEEEEecCC
Q 037138 232 SKKKFLLLLDDVW 244 (806)
Q Consensus 232 ~~k~~LlvlDdv~ 244 (806)
.++ -++++|..-
T Consensus 214 ~~~-DlVLIDTaG 225 (374)
T PRK14722 214 RNK-HMVLIDTIG 225 (374)
T ss_pred cCC-CEEEEcCCC
Confidence 454 456689874
No 305
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.85 E-value=0.072 Score=56.22 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=42.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCC-C-C-CCCCeEEEEEeCCcccHHHHHHHHHHHhCC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLD-T-P-NDFDVVIWVVVSKDMQLERIQEKIGERIGL 214 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~-~-~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 214 (806)
.-.++-|+|.+|+|||++|..++-.... . . ..-..++||+....|.++++. +|++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 4678889999999999999988754310 0 1 112379999999998888764 45666543
No 306
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.85 E-value=0.04 Score=58.17 Aligned_cols=57 Identities=25% Similarity=0.373 Sum_probs=41.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCC----CCCeEEEEEeCCcccHHHHHHHHHHHhC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPN----DFDVVIWVVVSKDMQLERIQEKIGERIG 213 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 213 (806)
.-.++-|+|++|+|||++|.+++-... ... .=..++||+....++..++.+. ++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~-~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQ-LPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhc-cccccCCCCceEEEEeCCCCcCHHHHHHH-HHHcC
Confidence 467888999999999999999987641 111 1147999999988888776543 34443
No 307
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.85 E-value=0.042 Score=55.96 Aligned_cols=120 Identities=14% Similarity=0.067 Sum_probs=63.5
Q ss_pred HHHHHHh-cCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEE---eCCcccHHHHHHHH--HHHhCCCC--
Q 037138 145 EKVWRCL-GEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVV---VSKDMQLERIQEKI--GERIGLLE-- 216 (806)
Q Consensus 145 ~~l~~~l-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~---~s~~~~~~~~~~~i--~~~l~~~~-- 216 (806)
+.++..+ ...+..-++|+|+.|+|||||.+.+..... .....+++. +.......++...+ +.|.....
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~ 174 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRT 174 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecchhHHHHHHHhcccccccccccc
Confidence 3344444 334567899999999999999999998762 223333432 21111112222111 01111000
Q ss_pred -CCCHHHHHHHHHHHhC-CCcEEEEEecCCCccCcccccccCCCCCCcEEEEecCC
Q 037138 217 -NRSLEERASGIFKILS-KKKFLLLLDDVWERIDLTKVGIPFPSKNTSKVVFTTRL 270 (806)
Q Consensus 217 -~~~~~~~~~~l~~~l~-~k~~LlvlDdv~~~~~~~~~~~~~~~~~~s~iivTtr~ 270 (806)
..+.......+...+. ..+-++++|++-....+..+...+ ..|..||+||..
T Consensus 175 ~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~--~~G~~vI~ttH~ 228 (270)
T TIGR02858 175 DVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL--HAGVSIIATAHG 228 (270)
T ss_pred cccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH--hCCCEEEEEech
Confidence 0011111223343333 578899999987655554443332 357789999884
No 308
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=0.00077 Score=65.86 Aligned_cols=106 Identities=22% Similarity=0.236 Sum_probs=77.4
Q ss_pred CCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEEecCCCcccccccc-ccccCCCCCcEE
Q 037138 503 MPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYLNLEHSRYLHTIPR-QLICSFSMLHVL 581 (806)
Q Consensus 503 l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~~~~~l~~L~~L 581 (806)
+.+.+.|++.+|. +..+. ...+|+.|+.|.||-|+|++|. .+..|++|+.|+|+.|. +..+.. ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~-L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCC-ccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhH
Confidence 5567788888884 44432 4457999999999999999885 58899999999999987 444432 236789999999
Q ss_pred EeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeE
Q 037138 582 RMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTI 620 (806)
Q Consensus 582 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 620 (806)
-|..|.-.+.-+ ...-...+..|++|+.|+-
T Consensus 94 WL~ENPCc~~ag--------~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 94 WLDENPCCGEAG--------QNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhccCCcccccc--------hhHHHHHHHHcccchhccC
Confidence 998887665422 1223345677788877763
No 309
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.84 E-value=0.035 Score=60.34 Aligned_cols=89 Identities=18% Similarity=0.239 Sum_probs=50.8
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC-cccHHHHHHHHHHHhCCCC-----CCCHHHHHHHH
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIGLLE-----NRSLEERASGI 227 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~l 227 (806)
..+.++.++|.+|+||||.|..++... ..+..+ .++-|++.. .+...+-++......+.+. ..+..+.....
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l-~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~a 174 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYL-KKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRA 174 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH-HHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHH
Confidence 346899999999999999999988775 111222 344444332 1122334445556555442 23444444444
Q ss_pred HHHhCCCcE-EEEEecCC
Q 037138 228 FKILSKKKF-LLLLDDVW 244 (806)
Q Consensus 228 ~~~l~~k~~-LlvlDdv~ 244 (806)
.+....+.+ ++|+|-.-
T Consensus 175 l~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 175 LEYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHHhcCCCEEEEeCCC
Confidence 444444445 77777654
No 310
>PRK14974 cell division protein FtsY; Provisional
Probab=95.83 E-value=0.064 Score=56.36 Aligned_cols=87 Identities=22% Similarity=0.285 Sum_probs=49.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCccc--HHHHHHHHHHHhCCCC-----CCCHHHHH-HH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQ--LERIQEKIGERIGLLE-----NRSLEERA-SG 226 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~-----~~~~~~~~-~~ 226 (806)
+..+|.++|++|+||||++..++... . ...+ .++.+. .+.+. ...-++..+..++.+. ..+..... +.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l-~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL-K-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 47899999999999999988888766 2 2233 333443 33332 2334555666666533 22332222 22
Q ss_pred HHHHhCCCcEEEEEecCCC
Q 037138 227 IFKILSKKKFLLLLDDVWE 245 (806)
Q Consensus 227 l~~~l~~k~~LlvlDdv~~ 245 (806)
+...-....-++++|-.-.
T Consensus 215 i~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHHhCCCCEEEEECCCc
Confidence 2222222223888998753
No 311
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.83 E-value=0.026 Score=54.08 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|.|+.|+|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44689999999999999999998875
No 312
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.82 E-value=0.0076 Score=47.25 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+|+|.|.+|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999874
No 313
>PRK07667 uridine kinase; Provisional
Probab=95.81 E-value=0.012 Score=57.20 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=29.6
Q ss_pred HHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 144 LEKVWRCLGE--ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 144 ~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+.+.+.+.. +...+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455566643 456799999999999999999999876
No 314
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.81 E-value=0.024 Score=50.85 Aligned_cols=103 Identities=18% Similarity=0.276 Sum_probs=56.9
Q ss_pred CCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccCh-hhhcCCCCcE
Q 037138 477 PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPK-ELKALVNLKY 555 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~ 555 (806)
.+|++|+.+.+.. .+..+....|..++.|+.+.+..+ ....-...+..+.+|+++.+.+ .+..++. .+..+++|+.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 5667777777764 466777777888888888888775 4433344667777788888865 4444443 4556788888
Q ss_pred EecCCCccccccccccccCCCCCcEEEeec
Q 037138 556 LNLEHSRYLHTIPRQLICSFSMLHVLRMVN 585 (806)
Q Consensus 556 L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~ 585 (806)
+++..+ +..++...+.++ +|+.+.+..
T Consensus 86 i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 86 IDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 888654 456666667776 777777654
No 315
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.80 E-value=0.035 Score=56.99 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=43.2
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHH--HHHHhCCCCCCCHHHHHHHHHHHh
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEK--IGERIGLLENRSLEERASGIFKIL 231 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~--i~~~l~~~~~~~~~~~~~~l~~~l 231 (806)
..+.+|||.|..|+||||+|+.+..-. .....-..+..++...-+...+.... +.+..+.+...+.....+.+...-
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll-~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL-SRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH-hhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence 467899999999999999998886655 11000112344443322222222222 111222233556666666666655
Q ss_pred CCC
Q 037138 232 SKK 234 (806)
Q Consensus 232 ~~k 234 (806)
.++
T Consensus 139 ~g~ 141 (290)
T TIGR00554 139 SGK 141 (290)
T ss_pred CCC
Confidence 554
No 316
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.80 E-value=0.0075 Score=58.71 Aligned_cols=78 Identities=15% Similarity=0.180 Sum_probs=43.6
Q ss_pred EEEEEccCCCCHHHHHHHHHhhcCCCCCCCC---eEEEEEeCCcccHHHHHHHHHHHh------CCCCCCCHHHHHHHHH
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKFLDTPNDFD---VVIWVVVSKDMQLERIQEKIGERI------GLLENRSLEERASGIF 228 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~---~~~wv~~s~~~~~~~~~~~i~~~l------~~~~~~~~~~~~~~l~ 228 (806)
||+|.|++|+||||+|+.+..... ..... ....++...-......... -... ..+...+.+...+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~--~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN--KRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--TCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--ccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 799999999999999999999872 22222 2333332222221221111 1111 1111456677777777
Q ss_pred HHhCCCcEEE
Q 037138 229 KILSKKKFLL 238 (806)
Q Consensus 229 ~~l~~k~~Ll 238 (806)
...+++.+-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666666543
No 317
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.78 E-value=0.062 Score=54.21 Aligned_cols=91 Identities=22% Similarity=0.216 Sum_probs=58.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCC-CCCCCCeEEEEEeCCcc-cHHHHHHHHHHHhCCCC--------CCCHHHH-
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLD-TPNDFDVVIWVVVSKDM-QLERIQEKIGERIGLLE--------NRSLEER- 223 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~- 223 (806)
.-.-++|.|..|+|||+|+..+.+...- .+..-+.++++-+.+.. .+.++.+.+...-.... ..+.-.+
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 4457899999999999999998887510 12335678888887754 56677777665422221 1221111
Q ss_pred -----HHHHHHHh--C-CCcEEEEEecCCC
Q 037138 224 -----ASGIFKIL--S-KKKFLLLLDDVWE 245 (806)
Q Consensus 224 -----~~~l~~~l--~-~k~~LlvlDdv~~ 245 (806)
.-.+.+++ + ++++|+++||+-.
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 11234444 3 7899999999854
No 318
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.75 E-value=0.12 Score=58.95 Aligned_cols=47 Identities=21% Similarity=0.233 Sum_probs=38.1
Q ss_pred CCccccchHHHHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 134 EPTIVGLNSTLEKVWRCLGE--ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 134 ~~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...++|....+.++.+.+.. ..-..|.|+|..|+|||++|+.+++..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 35689999999998887743 334456799999999999999999875
No 319
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.75 E-value=0.024 Score=53.77 Aligned_cols=106 Identities=16% Similarity=0.115 Sum_probs=56.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCC--C---CCCC--eEEEEEeCCcccHHHHHHHHHHHhCCCC--------CCC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDT--P---NDFD--VVIWVVVSKDMQLERIQEKIGERIGLLE--------NRS 219 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~---~~F~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~--------~~~ 219 (806)
.-.+++|+|+.|+|||||.+.+..+.-.+ . ..|. .+.|+ .+ .+.+..++... .-+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 44689999999999999999986432110 0 0111 12232 21 34556655431 111
Q ss_pred HHHH-HHHHHHHhCCC--cEEEEEecCCCccCc---ccccccCCC--CCCcEEEEecCC
Q 037138 220 LEER-ASGIFKILSKK--KFLLLLDDVWERIDL---TKVGIPFPS--KNTSKVVFTTRL 270 (806)
Q Consensus 220 ~~~~-~~~l~~~l~~k--~~LlvlDdv~~~~~~---~~~~~~~~~--~~~s~iivTtr~ 270 (806)
..+. .-.+...+-.+ +-++++|+.-..-+. +.+...+.. ..|..||++|.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~ 148 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN 148 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 1221 12244455556 778889998654332 222222322 246778888874
No 320
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.75 E-value=0.025 Score=56.09 Aligned_cols=115 Identities=21% Similarity=0.269 Sum_probs=65.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCC----------CC---CeEEEEEe----CCc--ccH---------------
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPN----------DF---DVVIWVVV----SKD--MQL--------------- 201 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----------~F---~~~~wv~~----s~~--~~~--------------- 201 (806)
-.+++|+|+.|.|||||.+.+..-....++ .+ ..+.||.= ... .++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 379999999999999999999884321111 01 23555521 111 011
Q ss_pred -------HHHHHHHHHHhCCCC-------CCCHHHH-HHHHHHHhCCCcEEEEEecCCCccCcc---cccccCCC--CCC
Q 037138 202 -------ERIQEKIGERIGLLE-------NRSLEER-ASGIFKILSKKKFLLLLDDVWERIDLT---KVGIPFPS--KNT 261 (806)
Q Consensus 202 -------~~~~~~i~~~l~~~~-------~~~~~~~-~~~l~~~l~~k~~LlvlDdv~~~~~~~---~~~~~~~~--~~~ 261 (806)
.+...+.+++++... .-+--+. .-.+.+.|..++=|++||+--...|.. .+...+.. ..|
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg 189 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG 189 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 233444555555443 1122222 234667788899999999865433321 22222222 338
Q ss_pred cEEEEecCC
Q 037138 262 SKVVFTTRL 270 (806)
Q Consensus 262 s~iivTtr~ 270 (806)
.-|++.|.+
T Consensus 190 ~tIl~vtHD 198 (254)
T COG1121 190 KTVLMVTHD 198 (254)
T ss_pred CEEEEEeCC
Confidence 899999987
No 321
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.73 E-value=0.0039 Score=58.83 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+|.|.|.+|+||||+|..+....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 68999999999999999998775
No 322
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.72 E-value=0.021 Score=60.82 Aligned_cols=46 Identities=24% Similarity=0.271 Sum_probs=37.3
Q ss_pred CccccchHHHHHHHHHhcCC--------------CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGEE--------------RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~--------------~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|.++.++.+.-.+... ..+.|.++|++|+|||++|+.++...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46889998888886655421 24688999999999999999999986
No 323
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.70 E-value=0.055 Score=58.02 Aligned_cols=87 Identities=20% Similarity=0.257 Sum_probs=53.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCC-CCCCeEEEEEeCCccc--HHHHHHHHHHHhCCCC--CCCHHHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTP-NDFDVVIWVVVSKDMQ--LERIQEKIGERIGLLE--NRSLEERASGIFK 229 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~--~~~~~~~~~~l~~ 229 (806)
..++|.++|+.|+||||.+..++....... ..-..+..+++. ++. ...-++..++.++.+. .....+....+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 457999999999999999999988762111 122345555544 332 2333566666666543 3444555444444
Q ss_pred HhCCCcEEEEEecCC
Q 037138 230 ILSKKKFLLLLDDVW 244 (806)
Q Consensus 230 ~l~~k~~LlvlDdv~ 244 (806)
. .+.-++++|..-
T Consensus 252 ~--~~~DlVLIDTaG 264 (388)
T PRK12723 252 S--KDFDLVLVDTIG 264 (388)
T ss_pred h--CCCCEEEEcCCC
Confidence 3 345688899875
No 324
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.70 E-value=0.15 Score=52.93 Aligned_cols=92 Identities=20% Similarity=0.176 Sum_probs=56.9
Q ss_pred HHHHhcCC---CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC-------
Q 037138 147 VWRCLGEE---RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE------- 216 (806)
Q Consensus 147 l~~~l~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------- 216 (806)
+-..|..+ .-+++-|+|+.|+||||||..+.... ...-..++||+....++... +++++...
T Consensus 41 LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~ 112 (322)
T PF00154_consen 41 LDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQ 112 (322)
T ss_dssp HHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE
T ss_pred cchhhccCccccCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhhH-----HHhcCccccceEEec
Confidence 33445433 35699999999999999999998876 23345789999988776643 34444322
Q ss_pred CCCHHHHHHHHHHHhC-CCcEEEEEecCCCc
Q 037138 217 NRSLEERASGIFKILS-KKKFLLLLDDVWER 246 (806)
Q Consensus 217 ~~~~~~~~~~l~~~l~-~k~~LlvlDdv~~~ 246 (806)
+...++....+...++ +..-++|+|-|-..
T Consensus 113 P~~~E~al~~~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 113 PDTGEQALWIAEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp -SSHHHHHHHHHHHHHTTSESEEEEE-CTT-
T ss_pred CCcHHHHHHHHHHHhhcccccEEEEecCccc
Confidence 5556666665556554 34458999988653
No 325
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.69 E-value=0.054 Score=55.46 Aligned_cols=87 Identities=22% Similarity=0.293 Sum_probs=49.6
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH--HHHHHHHHHhCCCC-----CCCHHH-HHH
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE--RIQEKIGERIGLLE-----NRSLEE-RAS 225 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~-----~~~~~~-~~~ 225 (806)
.+.++|.++|++|+||||++..++... . ..-..+..++.. .+... +-+...++..+... ..+... ..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l-~--~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~ 145 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL-K--KQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFD 145 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHH
Confidence 456899999999999999999998876 2 222356666543 23222 23333444444321 222222 223
Q ss_pred HHHHHhCCCcEEEEEecCC
Q 037138 226 GIFKILSKKKFLLLLDDVW 244 (806)
Q Consensus 226 ~l~~~l~~k~~LlvlDdv~ 244 (806)
.+.....+..-++++|-.-
T Consensus 146 ~l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 146 AIQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHHCCCCEEEEeCCC
Confidence 3444334445578888764
No 326
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.69 E-value=0.12 Score=54.55 Aligned_cols=44 Identities=16% Similarity=0.223 Sum_probs=33.5
Q ss_pred cccchHHHHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 137 IVGLNSTLEKVWRCLGE--ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 137 ~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
++|....+.++.+.+.. ..-.-|-|+|..|+||+++|+.+++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 36777777777766633 334557899999999999999998865
No 327
>PTZ00035 Rad51 protein; Provisional
Probab=95.68 E-value=0.13 Score=54.40 Aligned_cols=88 Identities=23% Similarity=0.250 Sum_probs=54.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCC----CCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC-----------CCC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDT----PNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE-----------NRS 219 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----------~~~ 219 (806)
.-.++.|+|.+|+|||||+.+++-.. .. ...=..++||+....++..++ .++++.++... ..+
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCC
Confidence 46789999999999999999987654 21 112236779998877777764 44455544321 233
Q ss_pred HHHHHHHH---HHHh-CCCcEEEEEecCC
Q 037138 220 LEERASGI---FKIL-SKKKFLLLLDDVW 244 (806)
Q Consensus 220 ~~~~~~~l---~~~l-~~k~~LlvlDdv~ 244 (806)
.++....+ ...+ ..+--|||+|-+.
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSit 223 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSAT 223 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 33333332 2222 2344588888874
No 328
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.66 E-value=0.015 Score=54.65 Aligned_cols=109 Identities=19% Similarity=0.230 Sum_probs=58.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC--cccHHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHh
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK--DMQLERIQEKIGERIGLLENRSLEE-RASGIFKIL 231 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~l~~~l 231 (806)
.-.+++|+|..|.|||||.+.++... ....+.+++.-.+ ..+..+..+ ..++....-+..+ ..-.+...+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~qLS~G~~qrl~laral 97 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDARR---AGIAMVYQLSVGERQMVEIARAL 97 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHHHh---cCeEEEEecCHHHHHHHHHHHHH
Confidence 44689999999999999999998875 2234455543111 111111111 1111111122222 222345566
Q ss_pred CCCcEEEEEecCCCccC---cccccccCCC--CCCcEEEEecCC
Q 037138 232 SKKKFLLLLDDVWERID---LTKVGIPFPS--KNTSKVVFTTRL 270 (806)
Q Consensus 232 ~~k~~LlvlDdv~~~~~---~~~~~~~~~~--~~~s~iivTtr~ 270 (806)
-.++-++++|+.-..-| ...+...+.. ..|..||++|.+
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 141 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 67788899999865433 2223333322 346677888775
No 329
>PTZ00301 uridine kinase; Provisional
Probab=95.66 E-value=0.01 Score=58.08 Aligned_cols=25 Identities=32% Similarity=0.631 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+|+|.|.+|+||||||+.+....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 5799999999999999999998765
No 330
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.65 E-value=0.01 Score=58.50 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=24.5
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999999876
No 331
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.64 E-value=0.036 Score=50.89 Aligned_cols=98 Identities=27% Similarity=0.314 Sum_probs=52.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHhCC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSL-EERASGIFKILSK 233 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~l~~~l~~ 233 (806)
.-.+++|+|..|.|||||++.+..... ...+.+|+.-.. .+.....-+. +...-.+...+-.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~~~~-------------~i~~~~~lS~G~~~rv~laral~~ 87 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE----PDEGIVTWGSTV-------------KIGYFEQLSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC----CCceEEEECCeE-------------EEEEEccCCHHHHHHHHHHHHHhc
Confidence 446899999999999999999988752 223334332100 0000000111 1122234555666
Q ss_pred CcEEEEEecCCCccCc---ccccccCCCCCCcEEEEecCC
Q 037138 234 KKFLLLLDDVWERIDL---TKVGIPFPSKNTSKVVFTTRL 270 (806)
Q Consensus 234 k~~LlvlDdv~~~~~~---~~~~~~~~~~~~s~iivTtr~ 270 (806)
++-++++|+.-..-|. ..+...+... +..||++|.+
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~-~~til~~th~ 126 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY-PGTVILVSHD 126 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc-CCEEEEEECC
Confidence 7788999988654332 2222222221 2467777764
No 332
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.64 E-value=0.095 Score=54.97 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=40.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcC-C--CCCCCCeEEEEEeCCcccHHHHHHHHHHHhC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFL-D--TPNDFDVVIWVVVSKDMQLERIQEKIGERIG 213 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~-~--~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 213 (806)
.-.++.|+|.+|+||||||.+++.... . ....-..++|++....+...++ .++++.++
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 467999999999999999999876431 0 0111236799998887777764 34455544
No 333
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.63 E-value=0.023 Score=53.92 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.|.|.|.+|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 334
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.62 E-value=0.092 Score=52.86 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=35.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEK 207 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 207 (806)
.-+++.|.|.+|+|||++|.++.... -..-..++||+... +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeC--CHHHHHHH
Confidence 56799999999999999999976654 12345788888765 34455444
No 335
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.16 Score=57.43 Aligned_cols=138 Identities=17% Similarity=0.107 Sum_probs=80.2
Q ss_pred ccccchHHHHHHHHHhc-------------CCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH
Q 037138 136 TIVGLNSTLEKVWRCLG-------------EERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE 202 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 202 (806)
.+.|.+..++.+.+.+. -...+.+-++|++|+|||.||+++++.. ...|-.+.+-.
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~~-------- 311 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGSE-------- 311 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCHH--------
Confidence 34566666655554431 1346689999999999999999999965 34442221111
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCccC-------------cccccccCCC---CCCcEEEE
Q 037138 203 RIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERID-------------LTKVGIPFPS---KNTSKVVF 266 (806)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~-------------~~~~~~~~~~---~~~s~iiv 266 (806)
+..... ..+.....+......+..+..|++|+++.... ..++...+.. ..+..||-
T Consensus 312 -----l~sk~v---Gesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~ 383 (494)
T COG0464 312 -----LLSKWV---GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIA 383 (494)
T ss_pred -----Hhcccc---chHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEe
Confidence 110000 12222223333344467899999999975311 1122222322 33334555
Q ss_pred ecCC----------------ceecccCChHHHHHHHHhhhCC
Q 037138 267 TTRL----------------IFKVECLRDKEAWELFLDKVGE 292 (806)
Q Consensus 267 Ttr~----------------~~~l~~L~~~e~~~lf~~~~~~ 292 (806)
||.. .+.+.+-+.++..+.|+.+...
T Consensus 384 aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 384 ATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred cCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 5543 6778888889999999888754
No 336
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.58 E-value=0.011 Score=54.27 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999999876
No 337
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.56 E-value=0.059 Score=56.81 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=41.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCC---CCCCCeEEEEEeCCcccHHHHHHHHHHHhC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDT---PNDFDVVIWVVVSKDMQLERIQEKIGERIG 213 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 213 (806)
.-.++-|+|.+|+||||++.+++-..... ...=..++||+....++..++.+ +++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 46788999999999999999998765110 00113799999988888777654 344443
No 338
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.56 E-value=0.067 Score=57.99 Aligned_cols=87 Identities=26% Similarity=0.245 Sum_probs=49.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCC-------CCCCCHHHH----
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGL-------LENRSLEER---- 223 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~-------~~~~~~~~~---- 223 (806)
.-..++|+|..|+|||||++.+.... .....+++..-....++..+....+..... +.......+
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 34579999999999999999887654 122344444432344455444433333211 112222111
Q ss_pred --HHHHHHHh--CCCcEEEEEecCCC
Q 037138 224 --ASGIFKIL--SKKKFLLLLDDVWE 245 (806)
Q Consensus 224 --~~~l~~~l--~~k~~LlvlDdv~~ 245 (806)
.-.+.+++ +++.+|+++||+-.
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchHH
Confidence 11233333 58999999999853
No 339
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.56 E-value=0.077 Score=56.84 Aligned_cols=81 Identities=26% Similarity=0.365 Sum_probs=49.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC-------CCCHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE-------NRSLEERASGI 227 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~l 227 (806)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++. .-++.++... ..+.+...+.+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 457999999999999999999998762 22346888876543 23322 2234444321 22333333333
Q ss_pred HHHhCCCcEEEEEecCC
Q 037138 228 FKILSKKKFLLLLDDVW 244 (806)
Q Consensus 228 ~~~l~~k~~LlvlDdv~ 244 (806)
. ..+.-++|+|.+.
T Consensus 155 ~---~~~~~lVVIDSIq 168 (372)
T cd01121 155 E---ELKPDLVIIDSIQ 168 (372)
T ss_pred H---hcCCcEEEEcchH
Confidence 2 2356678888874
No 340
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.96 Score=48.37 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.5
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+=--++||+|+|||++..++++..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc
Confidence 446689999999999999999987
No 341
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.55 E-value=0.066 Score=50.07 Aligned_cols=113 Identities=21% Similarity=0.133 Sum_probs=61.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC---cccHHHHHHHHH---HHhCCCC---CCCH-----
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK---DMQLERIQEKIG---ERIGLLE---NRSL----- 220 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~---~~l~~~~---~~~~----- 220 (806)
....|-|++..|.||||.|..++-+.. ...+ .++.+.+-+ ...-..++..+. .+.+... ..+.
T Consensus 4 ~~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~-~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 4 ERGIIIVHTGNGKGKTTAAFGMALRAL--GHGK-KVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred cccEEEEECCCCCChHHHHHHHHHHHH--HCCC-eEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHH
Confidence 346888999999999999999888762 2222 343333222 233334443320 0001100 1111
Q ss_pred --HHHHHHHHHHhCCCc-EEEEEecCCC-----ccCcccccccCCC-CCCcEEEEecCC
Q 037138 221 --EERASGIFKILSKKK-FLLLLDDVWE-----RIDLTKVGIPFPS-KNTSKVVFTTRL 270 (806)
Q Consensus 221 --~~~~~~l~~~l~~k~-~LlvlDdv~~-----~~~~~~~~~~~~~-~~~s~iivTtr~ 270 (806)
.+..+..++.+...+ =+||||++-. ..+.+.+...+.. ..+..||+|-|.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~ 139 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRG 139 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCC
Confidence 112223444454444 4999999853 2344455555545 567799999995
No 342
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.54 E-value=0.073 Score=57.45 Aligned_cols=86 Identities=26% Similarity=0.327 Sum_probs=54.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcc-cHHHHHHHHHHHhCCCC--------CCCHHHH--
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDM-QLERIQEKIGERIGLLE--------NRSLEER-- 223 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~-- 223 (806)
.-..++|+|..|+|||||++.++... ..+.++.+-+++.. .+.++.+.++..-+... ..+...+
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 45679999999999999999998754 22456666676654 44556666544422221 2222221
Q ss_pred ----HHHHHHHh--CCCcEEEEEecCCC
Q 037138 224 ----ASGIFKIL--SKKKFLLLLDDVWE 245 (806)
Q Consensus 224 ----~~~l~~~l--~~k~~LlvlDdv~~ 245 (806)
+-.+.+++ +++.+|+++||+-.
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 11233444 68999999999853
No 343
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.53 E-value=0.025 Score=53.87 Aligned_cols=49 Identities=27% Similarity=0.381 Sum_probs=36.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHH
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGE 210 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 210 (806)
..+|+|-||-|+||||||+.++++. . | .+++-.+.+++=+....+++-+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l-~----~-~~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL-G----F-KVFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh-C----C-ceeeecccCChHHHHHHHhHHH
Confidence 4689999999999999999999998 2 2 2444556666666666666543
No 344
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.2 Score=49.90 Aligned_cols=91 Identities=19% Similarity=0.256 Sum_probs=57.5
Q ss_pred CccccchHHHHHHHHHhc----------C--CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH
Q 037138 135 PTIVGLNSTLEKVWRCLG----------E--ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE 202 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~----------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 202 (806)
+++.|.|..++.+.+... . ...+-|.++|++|.||+.||++|+... . ... .+||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA-n-STF------FSvSSS---- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA-N-STF------FSVSSS---- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc-C-Cce------EEeehH----
Confidence 356788888888877542 1 246789999999999999999999986 1 222 344432
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHh-CCCcEEEEEecCCC
Q 037138 203 RIQEKIGERIGLLENRSLEERASGIFKIL-SKKKFLLLLDDVWE 245 (806)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l-~~k~~LlvlDdv~~ 245 (806)
++ ++... ...+.+.+.|.+.- +.|+-+|++|+|+.
T Consensus 201 DL----vSKWm----GESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 201 DL----VSKWM----GESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred HH----HHHHh----ccHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 11 11111 11223333333332 57899999999974
No 345
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.49 E-value=0.17 Score=51.70 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=28.8
Q ss_pred HHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 147 VWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 147 l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+++.+.+..+|.|+|.+|+|||||+..+.+..
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344455789999999999999999999999986
No 346
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.49 E-value=0.012 Score=57.83 Aligned_cols=27 Identities=37% Similarity=0.497 Sum_probs=24.1
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+...+|+|+|++|+||||||+.+....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999999876
No 347
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.49 E-value=0.057 Score=50.97 Aligned_cols=111 Identities=13% Similarity=0.124 Sum_probs=56.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCC--CC---eEEEEEeCCcccH--HHHHHHHHHHhCCCCCCCHH-HHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPND--FD---VVIWVVVSKDMQL--ERIQEKIGERIGLLENRSLE-ERASG 226 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~--F~---~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~~~-~~~~~ 226 (806)
.-.+++|+|..|.|||||++.+........+. ++ .+.+ +.+.+.. ..+.+.+.-. ....-+.. ...-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~--~~~~LS~G~~~rv~ 101 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP--WDDVLSGGEQQRLA 101 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc--CCCCCCHHHHHHHH
Confidence 44689999999999999999999875221111 11 1222 2333211 1222332210 11122222 22223
Q ss_pred HHHHhCCCcEEEEEecCCCccCcc---cccccCCCCCCcEEEEecCC
Q 037138 227 IFKILSKKKFLLLLDDVWERIDLT---KVGIPFPSKNTSKVVFTTRL 270 (806)
Q Consensus 227 l~~~l~~k~~LlvlDdv~~~~~~~---~~~~~~~~~~~s~iivTtr~ 270 (806)
+...+-.++-++++|+.-..-|.. .+...+... +..||++|.+
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~~tiiivsh~ 147 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL-GITVISVGHR 147 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh-CCEEEEEeCC
Confidence 555666777888999876543322 222222111 3567777764
No 348
>PRK06762 hypothetical protein; Provisional
Probab=95.47 E-value=0.013 Score=55.45 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+|.|.|++|+||||+|+.+....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 349
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.45 E-value=0.06 Score=58.77 Aligned_cols=89 Identities=24% Similarity=0.348 Sum_probs=58.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcc-cHHHHHHHHHHHhCCCC--------CCCHHHH--
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDM-QLERIQEKIGERIGLLE--------NRSLEER-- 223 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~-- 223 (806)
+-.-++|.|.+|+|||||+.++..... +.+-+.++++-+.+.. .+.++...+...-.... ..+...+
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 446799999999999999999988762 2356788888777654 45666666654322211 2222221
Q ss_pred ----HHHHHHHh---CCCcEEEEEecCCC
Q 037138 224 ----ASGIFKIL---SKKKFLLLLDDVWE 245 (806)
Q Consensus 224 ----~~~l~~~l---~~k~~LlvlDdv~~ 245 (806)
+-.+.+++ +++.+|+++|++-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 12344555 38999999999943
No 350
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.42 E-value=0.013 Score=56.77 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
++++|.|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998765
No 351
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.41 E-value=0.04 Score=52.40 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=23.6
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345699999999999999999998865
No 352
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.37 E-value=0.093 Score=55.34 Aligned_cols=87 Identities=20% Similarity=0.151 Sum_probs=53.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCc-ccHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHh
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGLLE--NRSLEERASGIFKIL 231 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~--~~~~~~~~~~l~~~l 231 (806)
+.+++.++|+.|+||||++..++... ... -..+.+|+...- .....-++..++.++.+. ..+..+..+.+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 46899999999999999999998765 212 235666665432 223445566666666543 345555544444322
Q ss_pred -CCCcEEEEEecCC
Q 037138 232 -SKKKFLLLLDDVW 244 (806)
Q Consensus 232 -~~k~~LlvlDdv~ 244 (806)
.+..=++++|-.-
T Consensus 282 ~~~~~D~VLIDTAG 295 (407)
T PRK12726 282 YVNCVDHILIDTVG 295 (407)
T ss_pred hcCCCCEEEEECCC
Confidence 1344677888764
No 353
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.37 E-value=0.04 Score=52.48 Aligned_cols=26 Identities=42% Similarity=0.570 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|..|.|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998865
No 354
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.36 E-value=0.015 Score=56.08 Aligned_cols=26 Identities=38% Similarity=0.650 Sum_probs=24.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
++.+|||.|.+|+||||+|+.++...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999988
No 355
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.36 E-value=0.071 Score=52.82 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+|+|.|.+|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 356
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.36 E-value=0.035 Score=50.61 Aligned_cols=43 Identities=30% Similarity=0.325 Sum_probs=32.5
Q ss_pred EEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHH
Q 037138 159 IGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEK 207 (806)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 207 (806)
|.++|++|+|||+||+.++... . ....-+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~---~~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---G---RPVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---T---CEEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---h---cceEEEEeccccccccceee
Confidence 6789999999999999999986 1 23455678887777776544
No 357
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.35 E-value=0.045 Score=54.71 Aligned_cols=97 Identities=12% Similarity=0.168 Sum_probs=60.1
Q ss_pred CccccchHHHHHHHHHhcC-------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLGE-------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEK 207 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~-------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 207 (806)
..++|..-.++.|+..+.+ .++-|++.+|.+|+||.-+++.+++...+...+= .....
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S---------------~~V~~ 146 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRS---------------PFVHH 146 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccc---------------hhHHH
Confidence 3467766666666666632 3677999999999999999999998862211111 11222
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHh-----CCCcEEEEEecCCCc
Q 037138 208 IGERIGLLENRSLEERASGIFKIL-----SKKKFLLLLDDVWER 246 (806)
Q Consensus 208 i~~~l~~~~~~~~~~~~~~l~~~l-----~~k~~LlvlDdv~~~ 246 (806)
...+...+.....+.-..+|++++ .-+|-|+|+|+|+..
T Consensus 147 fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 147 FVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 333333333334444344444443 347999999999864
No 358
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.35 E-value=0.062 Score=52.79 Aligned_cols=26 Identities=42% Similarity=0.666 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
....|.++||+|.||||..|.++.+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH
Confidence 56788899999999999999999987
No 359
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.34 E-value=0.08 Score=53.77 Aligned_cols=88 Identities=20% Similarity=0.169 Sum_probs=58.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhC---CCCCCCHHHHHHHH---H
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIG---LLENRSLEERASGI---F 228 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~---~~~~~~~~~~~~~l---~ 228 (806)
.-+++=|+|+.|.||||+|.+++-.. ...-..++||+.-..+++..+..--...+. .....+.++....+ .
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 45788899999999999999988776 334448999999999988776443333122 22244444443333 3
Q ss_pred HHhCCCcEEEEEecCCC
Q 037138 229 KILSKKKFLLLLDDVWE 245 (806)
Q Consensus 229 ~~l~~k~~LlvlDdv~~ 245 (806)
.....+--|+|+|-|-.
T Consensus 136 ~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 136 RSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HhccCCCCEEEEecCcc
Confidence 33333456999998854
No 360
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.34 E-value=0.11 Score=56.42 Aligned_cols=86 Identities=23% Similarity=0.313 Sum_probs=53.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcc-cHHHHHHHHHHHhCCCC--------CCCHHHH--
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDM-QLERIQEKIGERIGLLE--------NRSLEER-- 223 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~-- 223 (806)
.-..++|+|..|+|||||++.+++.. ..+.++++-++... .+.++....+..-+... ..+...+
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 55789999999999999999998765 12455566666544 34455554444322211 2222221
Q ss_pred ----HHHHHHHh--CCCcEEEEEecCCC
Q 037138 224 ----ASGIFKIL--SKKKFLLLLDDVWE 245 (806)
Q Consensus 224 ----~~~l~~~l--~~k~~LlvlDdv~~ 245 (806)
+-.+.+++ +++.+|+++||+-.
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 11233444 68999999999853
No 361
>PRK03839 putative kinase; Provisional
Probab=95.30 E-value=0.014 Score=56.05 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999986
No 362
>PRK05439 pantothenate kinase; Provisional
Probab=95.27 E-value=0.099 Score=54.15 Aligned_cols=81 Identities=20% Similarity=0.140 Sum_probs=44.7
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHH--HHHHHhCCCCCCCHHHHHHHHHHHh
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQE--KIGERIGLLENRSLEERASGIFKIL 231 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~--~i~~~l~~~~~~~~~~~~~~l~~~l 231 (806)
...-+|+|.|.+|+||||+|+.+.... .....-..+.-++...-+...+.+. .+...-+.+..-+.+...+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l-~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk 162 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL-SRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVK 162 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH-HhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHH
Confidence 467899999999999999999998865 1111112233343332222222211 1222223333456666666666655
Q ss_pred CCCc
Q 037138 232 SKKK 235 (806)
Q Consensus 232 ~~k~ 235 (806)
.|+.
T Consensus 163 ~G~~ 166 (311)
T PRK05439 163 SGKP 166 (311)
T ss_pred cCCC
Confidence 6665
No 363
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.26 E-value=0.11 Score=52.55 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=33.3
Q ss_pred EEEEEccCCCCHHHHHHHHHhhcCCCCCCC---------CeEEEEEeCCcc-cHHHHHHHHHHHh
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKFLDTPNDF---------DVVIWVVVSKDM-QLERIQEKIGERI 212 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F---------~~~~wv~~s~~~-~~~~~~~~i~~~l 212 (806)
+..|+|++|+|||+||.+++-........| ..+++++...+. .+.+=+..+...+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~ 67 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHL 67 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhc
Confidence 567899999999999999987642111111 245666655543 2333344444443
No 364
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.26 E-value=0.095 Score=57.07 Aligned_cols=89 Identities=22% Similarity=0.362 Sum_probs=57.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcc-cHHHHHHHHHHHhCCCC--------CCCHHHH--
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDM-QLERIQEKIGERIGLLE--------NRSLEER-- 223 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~-- 223 (806)
.-.-++|.|.+|+|||||+.++..... .++=+.++++-+.+.. .+.++.+.+...-.... ..+...+
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~--~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 446789999999999999999877652 1222467777776654 56667777765422221 2222222
Q ss_pred ----HHHHHHHh---CCCcEEEEEecCCC
Q 037138 224 ----ASGIFKIL---SKKKFLLLLDDVWE 245 (806)
Q Consensus 224 ----~~~l~~~l---~~k~~LlvlDdv~~ 245 (806)
+-.+.+++ +++.+|+++|++-.
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 22344555 78999999999853
No 365
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.25 E-value=0.054 Score=57.99 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=22.3
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++.++|++|+||||+|.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 366
>PRK08149 ATP synthase SpaL; Validated
Probab=95.25 E-value=0.1 Score=56.45 Aligned_cols=86 Identities=16% Similarity=0.269 Sum_probs=52.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCc-ccHHHHHHHHHHHhCCCC--------CCCHHH---
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGLLE--------NRSLEE--- 222 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~--------~~~~~~--- 222 (806)
+-..++|+|..|+|||||++.++... .-+.++...+... .++.++..+......... ..+...
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 45689999999999999999998764 2233444444433 345566666655432211 222211
Q ss_pred ---HHHHHHHHh--CCCcEEEEEecCCC
Q 037138 223 ---RASGIFKIL--SKKKFLLLLDDVWE 245 (806)
Q Consensus 223 ---~~~~l~~~l--~~k~~LlvlDdv~~ 245 (806)
.+-.+.+++ ++|.+||++||+-.
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 112233333 68999999999854
No 367
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.24 E-value=0.031 Score=48.82 Aligned_cols=45 Identities=18% Similarity=0.319 Sum_probs=34.3
Q ss_pred ccccchHHHHHHHHHhc----C---CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 136 TIVGLNSTLEKVWRCLG----E---ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~----~---~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.++|-+-..+.+++.+. + .++-|++.+|.+|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 46676666666666553 2 467799999999999999999988873
No 368
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.22 E-value=0.86 Score=47.24 Aligned_cols=157 Identities=11% Similarity=0.078 Sum_probs=89.4
Q ss_pred HHHHHHHhcCCCc-eEEEEEccCCCCHHHHHHHHHhhcC-------CCCCCCCeEEEEEe-CCcccHHHHHHHHHHHhCC
Q 037138 144 LEKVWRCLGEERV-GIIGLYGMGGVGKTTLLAQINNKFL-------DTPNDFDVVIWVVV-SKDMQLERIQEKIGERIGL 214 (806)
Q Consensus 144 ~~~l~~~l~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~-------~~~~~F~~~~wv~~-s~~~~~~~~~~~i~~~l~~ 214 (806)
++.+.+.+..++. .+.-++|..|+||+++|..+.+... ....|-+.+.++.. +....+.++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 4455556655554 5566999999999999999987751 11112222333332 2223333332 22222211
Q ss_pred CCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc--CcccccccCCC-CCCcEEEEecCC-------------ceecccCC
Q 037138 215 LENRSLEERASGIFKILSKKKFLLLLDDVWERI--DLTKVGIPFPS-KNTSKVVFTTRL-------------IFKVECLR 278 (806)
Q Consensus 215 ~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~--~~~~~~~~~~~-~~~s~iivTtr~-------------~~~l~~L~ 278 (806)
. ..-.+.+-++|+|++.... ....+...+.. ..++.+|++|.+ .+++.+++
T Consensus 84 ~-------------~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~ 150 (299)
T PRK07132 84 S-------------SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPD 150 (299)
T ss_pred C-------------CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCC
Confidence 0 0012577889999986542 23344444544 556666665544 78899999
Q ss_pred hHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhh
Q 037138 279 DKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITTG 323 (806)
Q Consensus 279 ~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g 323 (806)
+++..+.+... +. . ++.+..++...+|.=-|+..+.
T Consensus 151 ~~~l~~~l~~~-~~-~-------~~~a~~~a~~~~~~~~a~~~~~ 186 (299)
T PRK07132 151 QQKILAKLLSK-NK-E-------KEYNWFYAYIFSNFEQAEKYIN 186 (299)
T ss_pred HHHHHHHHHHc-CC-C-------hhHHHHHHHHcCCHHHHHHHHh
Confidence 99988777654 11 1 3446777777777445565554
No 369
>PRK04040 adenylate kinase; Provisional
Probab=95.20 E-value=0.017 Score=55.57 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+|+|+|++|+||||+++.+....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999886
No 370
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.20 E-value=0.028 Score=61.15 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=37.6
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++||++.++.+...+..+ .-|-|.|++|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 35899999999998887544 357789999999999999999876
No 371
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.19 E-value=0.073 Score=53.54 Aligned_cols=48 Identities=19% Similarity=0.135 Sum_probs=35.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEK 207 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 207 (806)
.-+++.|+|.+|+|||++|.++..... ..=..++|++.... ..++.+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~~--~~~~~~~ 71 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTENT--SKSYLKQ 71 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCCC--HHHHHHH
Confidence 567999999999999999999966541 22357889988654 3445444
No 372
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.18 E-value=0.042 Score=58.62 Aligned_cols=46 Identities=24% Similarity=0.242 Sum_probs=37.9
Q ss_pred CccccchHHHHHHHHHhcC--------------CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGE--------------ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|.+..++.+..++.. .....|.++|++|+|||++|+.+....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999888877632 024688999999999999999999986
No 373
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.18 E-value=0.047 Score=51.95 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|.|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 44689999999999999999999865
No 374
>PTZ00494 tuzin-like protein; Provisional
Probab=95.17 E-value=1.3 Score=47.39 Aligned_cols=147 Identities=16% Similarity=0.096 Sum_probs=91.9
Q ss_pred CCccccchHHHHHHHHHhcC---CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHH
Q 037138 134 EPTIVGLNSTLEKVWRCLGE---ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGE 210 (806)
Q Consensus 134 ~~~~~gr~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 210 (806)
...+|.|+.+-..+.+.|.. ..++++.+.|.-|.||++|.+....+. . -..++|+|... ++-++.|++
T Consensus 370 ~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE-~-----~paV~VDVRg~---EDtLrsVVK 440 (664)
T PTZ00494 370 EAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE-G-----VALVHVDVGGT---EDTLRSVVR 440 (664)
T ss_pred cccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc-C-----CCeEEEEecCC---cchHHHHHH
Confidence 35678998887777666643 478999999999999999999988775 1 14677887654 556788889
Q ss_pred HhCCCCC----CCHHHHHHH---HHHHhCCCcEEEEEecCCCccCcccccc---cCCC-CCCcEEEE-------ecCC--
Q 037138 211 RIGLLEN----RSLEERASG---IFKILSKKKFLLLLDDVWERIDLTKVGI---PFPS-KNTSKVVF-------TTRL-- 270 (806)
Q Consensus 211 ~l~~~~~----~~~~~~~~~---l~~~l~~k~~LlvlDdv~~~~~~~~~~~---~~~~-~~~s~iiv-------Ttr~-- 270 (806)
.++.+.. +-++-..+. -.....++.-+||+-= .+...+..+.. .+.. ..-|.|++ |+-+
T Consensus 441 ALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkL-REGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n~~ 519 (664)
T PTZ00494 441 ALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRL-REGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLNVS 519 (664)
T ss_pred HhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEe-ccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhhcc
Confidence 9988762 222222222 2223445655666542 22222222211 1111 33455554 2222
Q ss_pred -----ceecccCChHHHHHHHHhhh
Q 037138 271 -----IFKVECLRDKEAWELFLDKV 290 (806)
Q Consensus 271 -----~~~l~~L~~~e~~~lf~~~~ 290 (806)
.|.+++++..+|.+.-.+..
T Consensus 520 LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 520 SRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred CccceeEecCCcCHHHHHHHHhccc
Confidence 78899999999998876654
No 375
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.17 E-value=0.083 Score=53.89 Aligned_cols=40 Identities=20% Similarity=0.340 Sum_probs=31.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK 197 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 197 (806)
.-+++.|.|.+|+||||+|.++..... ..=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 467999999999999999999876641 2234688888764
No 376
>PRK04328 hypothetical protein; Provisional
Probab=95.17 E-value=0.087 Score=53.41 Aligned_cols=41 Identities=17% Similarity=0.132 Sum_probs=31.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKD 198 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 198 (806)
.-+++.|.|.+|+|||+||.++.... ...-..++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC
Confidence 46799999999999999999977664 123456888887664
No 377
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.16 E-value=0.019 Score=57.02 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
-|.|.|++|+||||+|+.++...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999886
No 378
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.14 E-value=0.035 Score=49.57 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=28.4
Q ss_pred HHHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 143 TLEKVWRCLGE--ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 143 ~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+.+++-+.+.. ..-.+|.+.|.-|+||||+++.++...
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34444444432 344589999999999999999999986
No 379
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.11 E-value=0.096 Score=52.87 Aligned_cols=84 Identities=18% Similarity=0.194 Sum_probs=51.1
Q ss_pred CceEEEEEccCCCCHHHHH-HHHHhhcCCCCCCCCeE-EEEEeCCcc-cHHHHHHHHHHHhCCCC--------CCCHHH-
Q 037138 155 RVGIIGLYGMGGVGKTTLL-AQINNKFLDTPNDFDVV-IWVVVSKDM-QLERIQEKIGERIGLLE--------NRSLEE- 222 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~F~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~~- 222 (806)
+-.-++|.|.+|+|||+|| ..+.+.. .-+.+ +++-+.+.. .+.++.+.+...-.... ..+...
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 4457899999999999996 5565543 22444 666676654 45666666654322111 121211
Q ss_pred ---------HHHHHHHHhCCCcEEEEEecCCC
Q 037138 223 ---------RASGIFKILSKKKFLLLLDDVWE 245 (806)
Q Consensus 223 ---------~~~~l~~~l~~k~~LlvlDdv~~ 245 (806)
.++.++. +++.+|+|+||+-.
T Consensus 143 ~~a~~~a~aiAE~fr~--~G~~Vlvl~DslTr 172 (274)
T cd01132 143 YLAPYTGCAMGEYFMD--NGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHHHHHHHHHH--CCCCEEEEEcChHH
Confidence 2233333 68999999999854
No 380
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.11 E-value=0.056 Score=51.32 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45689999999999999999999875
No 381
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.10 E-value=0.11 Score=48.42 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=24.1
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..-.++.++|++|.||||+.+.+|...
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 345689999999999999999999986
No 382
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.10 E-value=0.015 Score=50.32 Aligned_cols=22 Identities=36% Similarity=0.706 Sum_probs=19.9
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q 037138 159 IGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~ 180 (806)
|-|+|.+|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988876
No 383
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.09 E-value=0.15 Score=53.24 Aligned_cols=86 Identities=28% Similarity=0.359 Sum_probs=51.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC-cccHHHHHHHHHHHhCCCC--------CCCHHHH--
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIGLLE--------NRSLEER-- 223 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~--------~~~~~~~-- 223 (806)
.-..++|+|..|+|||||++.+.... . -+..+..-+.. ..++.++.......-+... ..+....
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~-~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT-T----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC-C----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 44678999999999999999998765 1 13334444443 3355555555554432211 2221111
Q ss_pred ----HHHHHHHh--CCCcEEEEEecCCC
Q 037138 224 ----ASGIFKIL--SKKKFLLLLDDVWE 245 (806)
Q Consensus 224 ----~~~l~~~l--~~k~~LlvlDdv~~ 245 (806)
.-.+.+++ ++|.+|+++||+-.
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 11223333 68999999999843
No 384
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.2 Score=52.70 Aligned_cols=92 Identities=26% Similarity=0.393 Sum_probs=59.8
Q ss_pred HHHHHHHhcCC--CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC-----
Q 037138 144 LEKVWRCLGEE--RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE----- 216 (806)
Q Consensus 144 ~~~l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----- 216 (806)
+.++-+.|..+ .-++|.|-|-+|+|||||.-+++.+.. . .. .++||+-.+...-. +--++.++...
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA-~-~~--~vLYVsGEES~~Qi---klRA~RL~~~~~~l~l 151 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA-K-RG--KVLYVSGEESLQQI---KLRADRLGLPTNNLYL 151 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH-h-cC--cEEEEeCCcCHHHH---HHHHHHhCCCccceEE
Confidence 44555556553 457999999999999999999999982 2 22 78888765543322 23345555322
Q ss_pred --CCCHHHHHHHHHHHhCCCcEEEEEecCCC
Q 037138 217 --NRSLEERASGIFKILSKKKFLLLLDDVWE 245 (806)
Q Consensus 217 --~~~~~~~~~~l~~~l~~k~~LlvlDdv~~ 245 (806)
..+.+...+.+.+ .++-++|+|-+..
T Consensus 152 ~aEt~~e~I~~~l~~---~~p~lvVIDSIQT 179 (456)
T COG1066 152 LAETNLEDIIAELEQ---EKPDLVVIDSIQT 179 (456)
T ss_pred ehhcCHHHHHHHHHh---cCCCEEEEeccce
Confidence 3444444444433 6788999999854
No 385
>PRK00625 shikimate kinase; Provisional
Probab=95.06 E-value=0.018 Score=54.50 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=21.2
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.|.++||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999886
No 386
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.05 E-value=0.53 Score=48.98 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=39.3
Q ss_pred cccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHH
Q 037138 137 IVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQ 205 (806)
Q Consensus 137 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 205 (806)
++=.......+...+..+ +.|.|.|++|+||||+|++++... ... .+.|.++...+..++.
T Consensus 47 y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l---~~~---~~rV~~~~~l~~~Dli 107 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARL---NWP---CVRVNLDSHVSRIDLV 107 (327)
T ss_pred ccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHH---CCC---eEEEEecCCCChhhcC
Confidence 333334455566666433 458999999999999999999987 222 2355555555544443
No 387
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.01 E-value=0.073 Score=61.75 Aligned_cols=82 Identities=16% Similarity=0.192 Sum_probs=57.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC-------CCCHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE-------NRSLEERASGI 227 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~l 227 (806)
.-+++-|+|.+|+||||||.+++... ...-..++||+....++.. .+++++... ..+.++....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a---~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANA---QAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 46788899999999999998876654 1223568999988777743 566666542 44555555556
Q ss_pred HHHhC-CCcEEEEEecCC
Q 037138 228 FKILS-KKKFLLLLDDVW 244 (806)
Q Consensus 228 ~~~l~-~k~~LlvlDdv~ 244 (806)
...++ ++.-+||+|-+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 66554 456689999985
No 388
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.99 E-value=0.14 Score=55.41 Aligned_cols=86 Identities=28% Similarity=0.403 Sum_probs=54.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcc-cHHHHHHHHHHHhCCCC--------CCCHHHH--
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDM-QLERIQEKIGERIGLLE--------NRSLEER-- 223 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~-- 223 (806)
+-..++|.|..|+|||||.+.+++.. .-+.++++-+++.. .+.++....+..-+... ..+...+
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 45689999999999999999999875 22567777777654 44555544433222111 2222221
Q ss_pred ----HHHHHHHh--CCCcEEEEEecCCC
Q 037138 224 ----ASGIFKIL--SKKKFLLLLDDVWE 245 (806)
Q Consensus 224 ----~~~l~~~l--~~k~~LlvlDdv~~ 245 (806)
+-.+.+++ +++++|+++||+-.
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 11233444 68999999999853
No 389
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.98 E-value=0.23 Score=52.56 Aligned_cols=86 Identities=23% Similarity=0.272 Sum_probs=49.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC-cccHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHh
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIGLLE--NRSLEERASGIFKIL 231 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~l~~~l 231 (806)
+-++|.+||+.||||||-..+++.... ....=..+..|+... .....+-++.-++-++.+. ..+..+....+.. +
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~-l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA-L 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH-h
Confidence 479999999999999886666555551 112234566666432 2234444555555566554 5555555554443 3
Q ss_pred CCCcEEEEEecC
Q 037138 232 SKKKFLLLLDDV 243 (806)
Q Consensus 232 ~~k~~LlvlDdv 243 (806)
++. =+|.+|=+
T Consensus 280 ~~~-d~ILVDTa 290 (407)
T COG1419 280 RDC-DVILVDTA 290 (407)
T ss_pred hcC-CEEEEeCC
Confidence 333 34444544
No 390
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.98 E-value=0.097 Score=51.84 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.|.|.|++|+||||+|+.++...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 391
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.97 E-value=0.12 Score=56.15 Aligned_cols=89 Identities=28% Similarity=0.408 Sum_probs=58.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcc-cHHHHHHHHHHHhCCCC--------CCCHHHH--
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDM-QLERIQEKIGERIGLLE--------NRSLEER-- 223 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~-- 223 (806)
.-.-++|.|.+|+|||+|+.++.... . +.+-+.++++-+.... .+.++.+.+...-.... ..+...+
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 44678999999999999999998875 2 2334688888887654 45666666654322211 2222221
Q ss_pred ----HHHHHHHh---CCCcEEEEEecCCC
Q 037138 224 ----ASGIFKIL---SKKKFLLLLDDVWE 245 (806)
Q Consensus 224 ----~~~l~~~l---~~k~~LlvlDdv~~ 245 (806)
+-.+.+++ +++.+|+++||+-.
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 12344554 46999999999854
No 392
>PRK05922 type III secretion system ATPase; Validated
Probab=94.97 E-value=0.15 Score=55.18 Aligned_cols=86 Identities=16% Similarity=0.297 Sum_probs=50.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCc-ccHHHHHHHHHHHhCCCC--------CCCHHHH--
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGLLE--------NRSLEER-- 223 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~--------~~~~~~~-- 223 (806)
.-..++|+|..|+|||||.+.+.... ..+...++-++.. ..+...+.+......... ..+...+
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 45579999999999999999998764 1233344334332 234455555444332221 1111111
Q ss_pred ----HHHHHHHh--CCCcEEEEEecCCC
Q 037138 224 ----ASGIFKIL--SKKKFLLLLDDVWE 245 (806)
Q Consensus 224 ----~~~l~~~l--~~k~~LlvlDdv~~ 245 (806)
+-.+.+++ +++.+|+++||+-.
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 11233444 68999999999854
No 393
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.95 E-value=0.046 Score=62.51 Aligned_cols=75 Identities=11% Similarity=0.177 Sum_probs=57.1
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCC
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGL 214 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 214 (806)
..++|.++.++.+...+... +.+.++|++|+||||+|+.+.... ...+++..+|..- ...+...+++.++.+++.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l--~~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELL--PKEELQDILVYPN-PEDPNNPKIRTVPAGKGK 105 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHc--ChHhHHHheEeeC-CCcchHHHHHHHHHhcCH
Confidence 45789999998888877655 468899999999999999999876 2445677888654 344667777777766653
No 394
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.94 E-value=0.017 Score=56.39 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+|+|.|++|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998864
No 395
>PRK06217 hypothetical protein; Validated
Probab=94.93 E-value=0.022 Score=54.79 Aligned_cols=34 Identities=32% Similarity=0.549 Sum_probs=26.2
Q ss_pred EEEEEccCCCCHHHHHHHHHhhcCCCCCCC--CeEEEE
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKFLDTPNDF--DVVIWV 193 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F--~~~~wv 193 (806)
.|.|.|.+|+||||+|+++.... . ..+| |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l-~-~~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL-D-IPHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-C-CcEEEcCceeec
Confidence 58999999999999999999986 2 2333 455554
No 396
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.92 E-value=0.022 Score=49.86 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=19.1
Q ss_pred EEEEccCCCCHHHHHHHHHhhcCCCCCCCC
Q 037138 159 IGLYGMGGVGKTTLLAQINNKFLDTPNDFD 188 (806)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~~~~~~~F~ 188 (806)
|-|+|.+|+||||+|+.++... ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCcee
Confidence 6789999999999999999987 45563
No 397
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.92 E-value=0.04 Score=48.97 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=26.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK 197 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 197 (806)
.+-|.|.|.+|+||||+|.+++... . .-|+++|+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~---~~~i~isd 40 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----G---LEYIEISD 40 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----C---CceEehhh
Confidence 4568899999999999999999764 1 34667665
No 398
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.91 E-value=0.068 Score=57.71 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=36.6
Q ss_pred CCccccchHHHHHHHHHhc-------C----C-------CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 134 EPTIVGLNSTLEKVWRCLG-------E----E-------RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 134 ~~~~~gr~~~~~~l~~~l~-------~----~-------~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...++|.++.++.+...+. . . ..+.|.++|++|+|||++|+.++...
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 4568999999888866551 1 1 12579999999999999999999765
No 399
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.91 E-value=0.0093 Score=61.04 Aligned_cols=88 Identities=22% Similarity=0.330 Sum_probs=48.9
Q ss_pred HHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHH
Q 037138 145 EKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERA 224 (806)
Q Consensus 145 ~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 224 (806)
..+++.+...+. -+-++|+.|+|||++++...... .. ..| .+.-++.+...+...+++.+-..+....
T Consensus 23 ~~ll~~l~~~~~-pvLl~G~~GtGKT~li~~~l~~l-~~-~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~-------- 90 (272)
T PF12775_consen 23 SYLLDLLLSNGR-PVLLVGPSGTGKTSLIQNFLSSL-DS-DKY-LVITINFSAQTTSNQLQKIIESKLEKRR-------- 90 (272)
T ss_dssp HHHHHHHHHCTE-EEEEESSTTSSHHHHHHHHHHCS-TT-CCE-EEEEEES-TTHHHHHHHHCCCTTECECT--------
T ss_pred HHHHHHHHHcCC-cEEEECCCCCchhHHHHhhhccC-Cc-ccc-ceeEeeccCCCCHHHHHHHHhhcEEcCC--------
Confidence 345555555544 55789999999999999988765 22 222 2445666665555544432211111100
Q ss_pred HHHHHHhCCCcEEEEEecCC
Q 037138 225 SGIFKILSKKKFLLLLDDVW 244 (806)
Q Consensus 225 ~~l~~~l~~k~~LlvlDdv~ 244 (806)
.....--.+|+.++++||+.
T Consensus 91 ~~~~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 91 GRVYGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp TEEEEEESSSEEEEEEETTT
T ss_pred CCCCCCCCCcEEEEEecccC
Confidence 00000014688899999985
No 400
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.90 E-value=0.093 Score=57.43 Aligned_cols=85 Identities=21% Similarity=0.254 Sum_probs=48.2
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcc-cHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHhC
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDM-QLERIQEKIGERIGLLE--NRSLEERASGIFKILS 232 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--~~~~~~~~~~l~~~l~ 232 (806)
.+++.++|++|+||||++..++... .....-..+..|+..... ....-++...+.++.+. ..+..+....+.. +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC
Confidence 3699999999999999999887765 101222456667653321 11222333344444433 3344444444443 23
Q ss_pred CCcEEEEEecC
Q 037138 233 KKKFLLLLDDV 243 (806)
Q Consensus 233 ~k~~LlvlDdv 243 (806)
..=+|++|..
T Consensus 299 -~~DlVlIDt~ 308 (424)
T PRK05703 299 -DCDVILIDTA 308 (424)
T ss_pred -CCCEEEEeCC
Confidence 3467888866
No 401
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.89 E-value=0.12 Score=55.86 Aligned_cols=86 Identities=30% Similarity=0.399 Sum_probs=50.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC-cccHHHHHHHHHHHhCCCC--------CCCHHHH--
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIGLLE--------NRSLEER-- 223 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~--------~~~~~~~-- 223 (806)
.-..++|+|..|+|||||++.+.... . . +....+.+.. ...+.++.+..+..-+... ..+...+
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~---~-~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT---D-A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC---C-C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 44689999999999999999888765 1 1 2223333333 3345556555544322221 2222111
Q ss_pred ----HHHHHHHh--CCCcEEEEEecCCC
Q 037138 224 ----ASGIFKIL--SKKKFLLLLDDVWE 245 (806)
Q Consensus 224 ----~~~l~~~l--~~k~~LlvlDdv~~ 245 (806)
+-.+.+++ +++.+|+++||+-.
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 11233444 68999999999853
No 402
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.88 E-value=0.044 Score=52.92 Aligned_cols=43 Identities=35% Similarity=0.422 Sum_probs=31.3
Q ss_pred EEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE 202 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 202 (806)
.|+|.|-||+||||+|..+..... ..+-..++-|+...++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~--~~~~~~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLL--SKGGYNVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHH--hcCCceEEEEeCCCCCChH
Confidence 689999999999999999666652 2221346667777776654
No 403
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.88 E-value=0.019 Score=54.87 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 404
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.059 Score=52.52 Aligned_cols=45 Identities=24% Similarity=0.320 Sum_probs=34.3
Q ss_pred ccccchHHHHHHHHHhcC-------------CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 136 TIVGLNSTLEKVWRCLGE-------------ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
++=|-.+.++++.+...- +.++-|-.+|++|.|||-+|++|+|+.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 344566677777665421 456778899999999999999999986
No 405
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.87 E-value=0.11 Score=48.96 Aligned_cols=57 Identities=18% Similarity=0.169 Sum_probs=37.0
Q ss_pred cccchHHHHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeC
Q 037138 137 IVGLNSTLEKVWRCLGE--ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVS 196 (806)
Q Consensus 137 ~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s 196 (806)
++|....+.++.+.+.. ....-|-|+|..|+||+.+|+.+++... ..-...+-|+++
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~---r~~~pfi~vnc~ 59 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP---RKNGPFISVNCA 59 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST---TTTS-EEEEETT
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh---cccCCeEEEehh
Confidence 46888888888776643 2234556999999999999999999752 222233455555
No 406
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.87 E-value=0.031 Score=51.33 Aligned_cols=36 Identities=28% Similarity=0.218 Sum_probs=27.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEE
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVV 194 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 194 (806)
..||-|.|.+|+||||||+++.... ...-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L---~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL---FARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH---HHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEec
Confidence 3689999999999999999999988 23334566664
No 407
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.87 E-value=0.15 Score=55.67 Aligned_cols=90 Identities=16% Similarity=0.143 Sum_probs=52.7
Q ss_pred CceEEEEEccCCCCHHHHH-HHHHhhcCCC-----CCCCCeEEEEEeCCcccHHHHHHHHHHHhC-CCC--------CCC
Q 037138 155 RVGIIGLYGMGGVGKTTLL-AQINNKFLDT-----PNDFDVVIWVVVSKDMQLERIQEKIGERIG-LLE--------NRS 219 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~-----~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~--------~~~ 219 (806)
+-.-++|.|..|+|||+|| ..+.+.. .+ .+.-+.++++-+++...-..-+.+.+++-+ ... ..+
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 3456899999999999997 5566653 11 124457888888877543322333334333 111 111
Q ss_pred HHHH------HHHHHHHh--CCCcEEEEEecCCC
Q 037138 220 LEER------ASGIFKIL--SKKKFLLLLDDVWE 245 (806)
Q Consensus 220 ~~~~------~~~l~~~l--~~k~~LlvlDdv~~ 245 (806)
...+ .-.+.+++ +++.+|+|+||+-.
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1111 11223333 58999999999854
No 408
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.86 E-value=0.15 Score=51.09 Aligned_cols=41 Identities=32% Similarity=0.353 Sum_probs=31.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKD 198 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 198 (806)
.-.++.|.|.+|+||||+|.++..... ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC
Confidence 457999999999999999998776541 22357888887443
No 409
>PHA02774 E1; Provisional
Probab=94.80 E-value=0.11 Score=57.65 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=34.4
Q ss_pred HHHHHHHhcC-CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeC
Q 037138 144 LEKVWRCLGE-ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVS 196 (806)
Q Consensus 144 ~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s 196 (806)
+..+..++.. .+...+.|+|++|+|||.+|..+.+-. . -..+.||+..
T Consensus 421 l~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L-~----G~vi~fvN~~ 469 (613)
T PHA02774 421 LTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFL-K----GKVISFVNSK 469 (613)
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh-C----CCEEEEEECc
Confidence 4455555543 345689999999999999999999876 1 2345677653
No 410
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.76 E-value=0.19 Score=58.18 Aligned_cols=85 Identities=22% Similarity=0.313 Sum_probs=51.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCccc--HHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHh
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQ--LERIQEKIGERIGLLE--NRSLEERASGIFKIL 231 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~--~~~~~~~~~~l~~~l 231 (806)
..||+++|+.|+||||.+.+++.... .......+..++.. .+. ..+-++...+.++.+. ..+..+..+.+. .+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~-~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~ 261 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV-AREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-AL 261 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH-HHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-Hh
Confidence 47999999999999999999987651 11112345555432 332 4455566666666544 345555544444 34
Q ss_pred CCCcEEEEEecCC
Q 037138 232 SKKKFLLLLDDVW 244 (806)
Q Consensus 232 ~~k~~LlvlDdv~ 244 (806)
+++ =+|++|=.-
T Consensus 262 ~~~-D~VLIDTAG 273 (767)
T PRK14723 262 GDK-HLVLIDTVG 273 (767)
T ss_pred cCC-CEEEEeCCC
Confidence 444 377777664
No 411
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.75 E-value=0.1 Score=50.73 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=20.5
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q 037138 159 IGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~ 180 (806)
|.|.|++|+||||+|+.++...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999875
No 412
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.72 E-value=0.19 Score=55.56 Aligned_cols=91 Identities=26% Similarity=0.368 Sum_probs=53.2
Q ss_pred HHHHHHhcCC--CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC------
Q 037138 145 EKVWRCLGEE--RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE------ 216 (806)
Q Consensus 145 ~~l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------ 216 (806)
..+-+.|..+ .-.++.|.|.+|+|||||+.+++.... ..-..++|++....+ .++... ++.++...
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees~--~qi~~r-a~rlg~~~~~l~~~ 140 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEESA--SQIKLR-AERLGLPSDNLYLL 140 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEccccH--HHHHHH-HHHcCCChhcEEEe
Confidence 3444444432 456999999999999999999998762 222467888865543 333222 34444321
Q ss_pred -CCCHHHHHHHHHHHhCCCcEEEEEecCC
Q 037138 217 -NRSLEERASGIFKILSKKKFLLLLDDVW 244 (806)
Q Consensus 217 -~~~~~~~~~~l~~~l~~k~~LlvlDdv~ 244 (806)
..+.+...+.+. +.+.-++|+|.+.
T Consensus 141 ~e~~l~~i~~~i~---~~~~~lVVIDSIq 166 (446)
T PRK11823 141 AETNLEAILATIE---EEKPDLVVIDSIQ 166 (446)
T ss_pred CCCCHHHHHHHHH---hhCCCEEEEechh
Confidence 233443333332 2345578888764
No 413
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.72 E-value=0.044 Score=57.75 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=39.7
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+||.+..+..++-.+.++...-+.|.|..|+|||||++.+..-.
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 3579999999998877777777778899999999999999998765
No 414
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.70 E-value=0.17 Score=55.03 Aligned_cols=89 Identities=21% Similarity=0.357 Sum_probs=57.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcc-cHHHHHHHHHHHhCCCC--------CCCHHHH--
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDM-QLERIQEKIGERIGLLE--------NRSLEER-- 223 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~-- 223 (806)
+-.-++|.|.+|+|||||+..+..... .++=+.++++-+.... .+.++.+++...-.... ..+...+
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 446789999999999999999887651 2223467777776653 45667777654322211 2222222
Q ss_pred ----HHHHHHHh---CCCcEEEEEecCCC
Q 037138 224 ----ASGIFKIL---SKKKFLLLLDDVWE 245 (806)
Q Consensus 224 ----~~~l~~~l---~~k~~LlvlDdv~~ 245 (806)
+-.+.+++ +++.+|+++||+-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 12344555 57899999999954
No 415
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.70 E-value=0.12 Score=50.07 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=29.9
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhcCCCCCCC-------CeEEEEEeCCcc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKFLDTPNDF-------DVVIWVVVSKDM 199 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F-------~~~~wv~~s~~~ 199 (806)
.++.|.|++|+||||++.++..........| ..++|++.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 5888999999999999999988774322222 378888876653
No 416
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.70 E-value=0.028 Score=53.53 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...|.|+|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999986
No 417
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.70 E-value=0.09 Score=60.35 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=51.1
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCC
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGL 214 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 214 (806)
..++|.++.++.+...+.... .+.++|++|+||||+|+.+.+.. . ...|...+++. ....+...+++.++.+++.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l-~-~~~~~~~~~~~-n~~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELL-P-DEELEDILVYP-NPEDPNMPRIVEVPAGEGR 92 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHc-C-chhheeEEEEe-CCCCCchHHHHHHHHhhch
Confidence 457899998888877776553 55599999999999999999887 2 23333333332 2223455567777766654
No 418
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.70 E-value=0.026 Score=54.07 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.9
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+++|+|++|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998875
No 419
>PRK14532 adenylate kinase; Provisional
Probab=94.70 E-value=0.13 Score=49.73 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=20.3
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q 037138 159 IGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~ 180 (806)
|.|.|++|+||||+|+.++...
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7789999999999999998875
No 420
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.14 Score=49.47 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.--+.+|.|+.|.||||||..+..+.
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999998875
No 421
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.69 E-value=0.19 Score=54.46 Aligned_cols=86 Identities=22% Similarity=0.282 Sum_probs=46.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC-cccHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHh
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIGLLE--NRSLEERASGIFKIL 231 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~l~~~l 231 (806)
.-.+|+++|+.|+||||++..+.... ......+.+..++... .....+-+...++.++.+. ..+..+....+. .+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l 267 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-EL 267 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hh
Confidence 34799999999999999999888754 1112223444444322 1223333445555555443 334444333332 34
Q ss_pred CCCcEEEEEecC
Q 037138 232 SKKKFLLLLDDV 243 (806)
Q Consensus 232 ~~k~~LlvlDdv 243 (806)
+++ -++++|-.
T Consensus 268 ~~~-d~VLIDTa 278 (420)
T PRK14721 268 RGK-HMVLIDTV 278 (420)
T ss_pred cCC-CEEEecCC
Confidence 443 34666654
No 422
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.68 E-value=0.039 Score=58.12 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=40.8
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+.+||-++.+..+...+.+..++-|.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999888888888888899999999999999997764
No 423
>PRK06851 hypothetical protein; Provisional
Probab=94.66 E-value=0.51 Score=50.10 Aligned_cols=55 Identities=24% Similarity=0.215 Sum_probs=39.2
Q ss_pred ccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCc
Q 037138 138 VGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKD 198 (806)
Q Consensus 138 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 198 (806)
-|.-.-.+.+. ++--+++.|.|++|+|||||+++++.... ...++..++-|-+++
T Consensus 200 ~G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a~--~~G~~v~~~hC~~dP 254 (367)
T PRK06851 200 KGAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAAE--ERGFDVEVYHCGFDP 254 (367)
T ss_pred CcHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHHH--hCCCeEEEEeCCCCC
Confidence 34444444443 45568899999999999999999999872 456666666665544
No 424
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.65 E-value=0.32 Score=56.93 Aligned_cols=46 Identities=20% Similarity=0.184 Sum_probs=35.6
Q ss_pred CccccchHHHHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGE--ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+.++|....+.++.+.+.. ..-.-|-|+|..|+||+++|+.+++..
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 4578988888887776643 223346799999999999999998875
No 425
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.63 E-value=0.024 Score=52.20 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+|.|.|++|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 426
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.62 E-value=0.037 Score=52.26 Aligned_cols=41 Identities=24% Similarity=0.209 Sum_probs=30.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK 197 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 197 (806)
...++-+.|+.|+|||.+|+.++... .. +.....+-++.+.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l-~~-~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELL-FV-GSERPLIRIDMSE 42 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHH-T--SSCCEEEEEEGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHh-cc-CCccchHHHhhhc
Confidence 35688899999999999999999988 21 4455666666554
No 427
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.61 E-value=0.06 Score=59.28 Aligned_cols=88 Identities=23% Similarity=0.188 Sum_probs=48.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEE-EEEeCCccc-HHHHHHHHHHHhC-CCCCCCHH------HHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVI-WVVVSKDMQ-LERIQEKIGERIG-LLENRSLE------ERAS 225 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~-wv~~s~~~~-~~~~~~~i~~~l~-~~~~~~~~------~~~~ 225 (806)
.-.-..|+|++|+|||||++.+.+... ..+-+..+ .+-|.+... +.++.+.+-..+- ........ ...-
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 445688999999999999999999652 23334443 334554432 3333332200000 01111111 1122
Q ss_pred HHHHHh--CCCcEEEEEecCC
Q 037138 226 GIFKIL--SKKKFLLLLDDVW 244 (806)
Q Consensus 226 ~l~~~l--~~k~~LlvlDdv~ 244 (806)
.+.+++ .++.+||++|++-
T Consensus 493 ~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCch
Confidence 233444 7899999999984
No 428
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.61 E-value=0.026 Score=51.83 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=19.0
Q ss_pred EEEEEccCCCCHHHHHHHHH
Q 037138 158 IIGLYGMGGVGKTTLLAQIN 177 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~ 177 (806)
.|+|.|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999998
No 429
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.59 E-value=0.16 Score=55.01 Aligned_cols=87 Identities=25% Similarity=0.331 Sum_probs=52.2
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCc-ccHHHHHHHHHHHhCCCC--------CCCHHHH-
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGLLE--------NRSLEER- 223 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~--------~~~~~~~- 223 (806)
..-..++|+|..|+|||||++.+.+.. +.+..+++.+... ..+.+...+....-.... .....++
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~ 227 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV 227 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHH
Confidence 355689999999999999999998764 2344556555543 344455555432111111 1222111
Q ss_pred -----HHHHHHHh--CCCcEEEEEecCCC
Q 037138 224 -----ASGIFKIL--SKKKFLLLLDDVWE 245 (806)
Q Consensus 224 -----~~~l~~~l--~~k~~LlvlDdv~~ 245 (806)
+-.+.+++ +++++|+++||+-.
T Consensus 228 ~a~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 228 RALFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 11233444 68999999999953
No 430
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.59 E-value=0.044 Score=53.33 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|..|+|||||++.+..-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 45689999999999999999998765
No 431
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.58 E-value=0.0017 Score=61.74 Aligned_cols=85 Identities=25% Similarity=0.217 Sum_probs=39.4
Q ss_pred hccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEEecCCCccccccccccccCCCCCc
Q 037138 500 FDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLH 579 (806)
Q Consensus 500 ~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~ 579 (806)
+..+...++||++.| ..-.+-..++.++.|..|+++.|.+..+|..++.+..++++++..|. ....|.+ ++.++.++
T Consensus 38 i~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s-~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKS-QKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCcc-ccccCCcc
Confidence 444444455555544 22233334444444445555555554555555555555555444443 3444443 44455555
Q ss_pred EEEeeccc
Q 037138 580 VLRMVNCD 587 (806)
Q Consensus 580 ~L~l~~~~ 587 (806)
++++.++.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 55444443
No 432
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.58 E-value=0.061 Score=48.19 Aligned_cols=105 Identities=22% Similarity=0.320 Sum_probs=59.4
Q ss_pred cccccCC--CCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccCh-
Q 037138 469 KIEKLSD--TPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPK- 545 (806)
Q Consensus 469 ~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~- 545 (806)
.+..++. ...+++|+.+.+..+ +..++...|..++.|+.+.+.++ ....-...+..+.+|+.+++..+ +..++.
T Consensus 22 ~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~ 98 (129)
T PF13306_consen 22 TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN-LKSIGDNAFSNCTNLKNIDIPSN-ITEIGSS 98 (129)
T ss_dssp T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST-T-EE-TTTTTT-TTECEEEETTT--BEEHTT
T ss_pred CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc-ccccccccccccccccccccCcc-ccEEchh
Confidence 3444433 367888999998875 88888888999999999999764 44333456777999999999775 665654
Q ss_pred hhhcCCCCcEEecCCCccccccccccccCCCCCc
Q 037138 546 ELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLH 579 (806)
Q Consensus 546 ~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~ 579 (806)
.+.++ +|+.+.+..+ +..++...|.++++|+
T Consensus 99 ~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 99 SFSNC-NLKEINIPSN--ITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTTT--T--EEE-TTB---SS----GGG------
T ss_pred hhcCC-CceEEEECCC--ccEECCccccccccCC
Confidence 46676 9999998764 5677887788887774
No 433
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.58 E-value=0.11 Score=56.45 Aligned_cols=86 Identities=24% Similarity=0.356 Sum_probs=51.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcc-cHHHHHHHHHHHhCCCC--------CCCHHHH--
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDM-QLERIQEKIGERIGLLE--------NRSLEER-- 223 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~-- 223 (806)
.-..++|+|..|+|||||++.+.... ..+.++...+.... ...++...+...-.... ......+
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 44679999999999999999998754 12344444444432 45555555554432221 1111111
Q ss_pred ----HHHHHHHh--CCCcEEEEEecCCC
Q 037138 224 ----ASGIFKIL--SKKKFLLLLDDVWE 245 (806)
Q Consensus 224 ----~~~l~~~l--~~k~~LlvlDdv~~ 245 (806)
+-.+.+++ +++.+|+++||+-.
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 11233444 68999999999854
No 434
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.58 E-value=0.095 Score=53.49 Aligned_cols=104 Identities=22% Similarity=0.255 Sum_probs=57.0
Q ss_pred ccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCC
Q 037138 138 VGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLEN 217 (806)
Q Consensus 138 ~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 217 (806)
.|...+..+.+..+....-.+|.|.|+.|.||||+++.+..... ..-..++.+.-...+.... + .++... .
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~---~~~~~iitiEdp~E~~~~~----~-~q~~v~-~ 132 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN---TPEKNIITVEDPVEYQIPG----I-NQVQVN-E 132 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC---CCCCeEEEECCCceecCCC----c-eEEEeC-C
Confidence 45444443444444445567899999999999999998877651 1111222222111111110 0 111111 1
Q ss_pred CCHHHHHHHHHHHhCCCcEEEEEecCCCccCcc
Q 037138 218 RSLEERASGIFKILSKKKFLLLLDDVWERIDLT 250 (806)
Q Consensus 218 ~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~~~ 250 (806)
.......+.++..++..+=.++++++.+.+...
T Consensus 133 ~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 133 KAGLTFARGLRAILRQDPDIIMVGEIRDAETAE 165 (264)
T ss_pred cCCcCHHHHHHHHhccCCCEEEeccCCCHHHHH
Confidence 111234556777788888899999998766544
No 435
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.58 E-value=0.044 Score=51.22 Aligned_cols=107 Identities=24% Similarity=0.261 Sum_probs=57.3
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcc--cHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHhC
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDM--QLERIQEKIGERIGLLENRS-LEERASGIFKILS 232 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~-~~~~~~~l~~~l~ 232 (806)
-.+++|+|..|.|||||++.+.... ......+++.-.... ...+.. ..+.....-+ -+...-.+...+.
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~~~----~~i~~~~qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEELR----RRIGYVPQLSGGQRQRVALARALL 96 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHHHH----hceEEEeeCCHHHHHHHHHHHHHh
Confidence 3699999999999999999998875 233455554321111 111111 1111100011 1222223455556
Q ss_pred CCcEEEEEecCCCccCc---ccccccCCC--CCCcEEEEecCC
Q 037138 233 KKKFLLLLDDVWERIDL---TKVGIPFPS--KNTSKVVFTTRL 270 (806)
Q Consensus 233 ~k~~LlvlDdv~~~~~~---~~~~~~~~~--~~~s~iivTtr~ 270 (806)
..+-++++|+.-..-|. ..+...+.. ..+..++++|.+
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~ 139 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 67889999998654332 222222222 235677777764
No 436
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.57 E-value=0.044 Score=49.85 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=28.5
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK 197 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 197 (806)
++|.|+|..|+|||||++.+.+... ...+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4899999999999999999999982 34555555666544
No 437
>PF13245 AAA_19: Part of AAA domain
Probab=94.56 E-value=0.082 Score=42.18 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=18.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhh
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNK 179 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~ 179 (806)
+-+++.|.|++|.|||+++......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567888999999999554444433
No 438
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.14 Score=47.85 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
-..+.|.|+.|+|||||.+.++.-.
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHccc
Confidence 3578899999999999999998865
No 439
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.55 E-value=0.026 Score=53.96 Aligned_cols=23 Identities=35% Similarity=0.743 Sum_probs=21.6
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 440
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.53 E-value=0.18 Score=50.33 Aligned_cols=49 Identities=20% Similarity=0.250 Sum_probs=32.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKI 208 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 208 (806)
.-.++.|.|.+|+||||+|.++..... +.. ..+++++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL--QNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEeCCC--CHHHHHHHH
Confidence 356999999999999999877665541 122 4567776433 445555555
No 441
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.52 E-value=0.049 Score=52.37 Aligned_cols=37 Identities=32% Similarity=0.464 Sum_probs=30.2
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEe
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVV 195 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~ 195 (806)
.++|.|+|+.|+|||||++.+.... ...|...+..+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeecc
Confidence 4789999999999999999999987 567765555543
No 442
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.52 E-value=0.14 Score=48.59 Aligned_cols=113 Identities=20% Similarity=0.117 Sum_probs=63.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC---cccHHHHHHHHH--H--HhCCCC---CCCHHH--
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK---DMQLERIQEKIG--E--RIGLLE---NRSLEE-- 222 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~--~--~l~~~~---~~~~~~-- 222 (806)
....|-|+|..|-||||.|..+.-+. ..+=-.+..+.+-+ ...-..+++.+- . +.+... ..+.++
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra---~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA---VGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH---HHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHH
Confidence 45789999999999999999988876 22223444444332 223333433320 0 001100 111111
Q ss_pred -----HHHHHHHHhCC-CcEEEEEecCCC-----ccCcccccccCCC-CCCcEEEEecCC
Q 037138 223 -----RASGIFKILSK-KKFLLLLDDVWE-----RIDLTKVGIPFPS-KNTSKVVFTTRL 270 (806)
Q Consensus 223 -----~~~~l~~~l~~-k~~LlvlDdv~~-----~~~~~~~~~~~~~-~~~s~iivTtr~ 270 (806)
..+..++.+.. +-=+||||++-. ..+.+++...+.. ..+..||+|-|.
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~ 157 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRG 157 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCC
Confidence 22233444544 445999999853 2344555555555 667799999995
No 443
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.50 E-value=0.027 Score=52.18 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.6
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+|.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998874
No 444
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.48 E-value=0.026 Score=30.32 Aligned_cols=16 Identities=38% Similarity=0.675 Sum_probs=6.2
Q ss_pred CCCEEEecCCCccccC
Q 037138 529 SLQYLNLSKTSIRELP 544 (806)
Q Consensus 529 ~L~~L~Ls~n~l~~lp 544 (806)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554444
No 445
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.46 E-value=0.061 Score=54.68 Aligned_cols=23 Identities=39% Similarity=0.663 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.|.++|++|+||||+|+++....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999876
No 446
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.45 E-value=0.22 Score=51.36 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=36.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGER 211 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 211 (806)
.-.++.|.|.+|+||||++.+++.... ..+=..++|++.... ..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 345888999999999999999988752 222346888887653 34455555443
No 447
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.45 E-value=0.2 Score=54.59 Aligned_cols=88 Identities=24% Similarity=0.308 Sum_probs=52.2
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC--------CCCHHHH--
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE--------NRSLEER-- 223 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~--------~~~~~~~-- 223 (806)
.+-..++|.|..|+|||||++.++... .. -..+++..-.....+.++.+.+...-.... ..+...+
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~-~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGT-QC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC-CC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 355689999999999999999998765 11 123444333334455555555554422211 1211111
Q ss_pred ----HHHHHHHh--CCCcEEEEEecCCC
Q 037138 224 ----ASGIFKIL--SKKKFLLLLDDVWE 245 (806)
Q Consensus 224 ----~~~l~~~l--~~k~~LlvlDdv~~ 245 (806)
+-.+.+++ +++.+|+++||+-.
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 11233444 58999999999853
No 448
>PRK13949 shikimate kinase; Provisional
Probab=94.44 E-value=0.032 Score=52.76 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=22.0
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-|.|+|++|+||||+++.++...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999987
No 449
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.43 E-value=0.033 Score=53.11 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=22.1
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998875
No 450
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.42 E-value=0.034 Score=50.49 Aligned_cols=23 Identities=48% Similarity=0.754 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999875
No 451
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.41 E-value=0.22 Score=52.24 Aligned_cols=26 Identities=35% Similarity=0.616 Sum_probs=24.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+|+++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56899999999999999999999887
No 452
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.41 E-value=0.041 Score=52.49 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+|.|+|++|+||||+|+.++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999999886
No 453
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=94.41 E-value=0.14 Score=55.59 Aligned_cols=87 Identities=24% Similarity=0.324 Sum_probs=48.2
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC-cccHHHHHHHHHHHhCCCC--------CCC-----
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIGLLE--------NRS----- 219 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~--------~~~----- 219 (806)
..-..++|+|..|+|||||++.+.... . .+..+...+.. ...+.++....+..-+... ..+
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~-~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl 227 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRYT-Q----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRI 227 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhccc-C----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhH
Confidence 355789999999999999999988754 1 12322232322 2233333333333322211 111
Q ss_pred -HHHHHHHHHHHh--CCCcEEEEEecCCC
Q 037138 220 -LEERASGIFKIL--SKKKFLLLLDDVWE 245 (806)
Q Consensus 220 -~~~~~~~l~~~l--~~k~~LlvlDdv~~ 245 (806)
..+....+.+++ +++.+|+++||+-.
T Consensus 228 ~a~e~a~~iAEyfr~~g~~Vll~~Dsltr 256 (434)
T PRK07196 228 KATELCHAIATYYRDKGHDVLLLVDSLTR 256 (434)
T ss_pred HHHHHHHHHHHHhhhccCCEEEeecchhH
Confidence 111222233333 58999999999854
No 454
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.40 E-value=0.037 Score=51.91 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=23.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 46799999999999999999999876
No 455
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.40 E-value=0.044 Score=54.18 Aligned_cols=63 Identities=21% Similarity=0.236 Sum_probs=37.2
Q ss_pred HHHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHH
Q 037138 143 TLEKVWRCLGE--ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQE 206 (806)
Q Consensus 143 ~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 206 (806)
...++++.+.. ++..+|+|.|+||+|||||...+.... ...++--.++-|+-|.+++--.++.
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCCCCcccc
Confidence 34455555533 578899999999999999999998887 3333333455555555555444443
No 456
>PRK13947 shikimate kinase; Provisional
Probab=94.40 E-value=0.032 Score=53.05 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
-|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999986
No 457
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.40 E-value=0.073 Score=60.82 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=34.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHH
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGE 210 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 210 (806)
-++..|.|.+|+||||+++.+.....+....-...+.+......-...+.+.+..
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 4688899999999999999988765211111124555655554444555555443
No 458
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.40 E-value=0.057 Score=55.03 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=19.7
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+.|.|.|.+|+||||+|+++....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 578999999999999999999987
No 459
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.38 E-value=0.032 Score=53.55 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.9
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998864
No 460
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.37 E-value=0.11 Score=52.22 Aligned_cols=64 Identities=30% Similarity=0.361 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCC----CCCCCCeEEEEEeCCcccHHHHHHHHH
Q 037138 144 LEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLD----TPNDFDVVIWVVVSKDMQLERIQEKIG 209 (806)
Q Consensus 144 ~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~~F~~~~wv~~s~~~~~~~~~~~i~ 209 (806)
.+.+...+.... +..|+|++|+||||++..+...... ....-+..+-++...+..+..++..+.
T Consensus 7 ~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~ 74 (236)
T PF13086_consen 7 REAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLK 74 (236)
T ss_dssp HHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHH
Confidence 334444443332 7889999999999776666655411 013344455555555545555554443
No 461
>PRK14531 adenylate kinase; Provisional
Probab=94.35 E-value=0.15 Score=48.96 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.7
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..|.|.|++|+||||+++.++...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999886
No 462
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.35 E-value=0.26 Score=54.55 Aligned_cols=52 Identities=27% Similarity=0.357 Sum_probs=36.1
Q ss_pred HHHHHHHhcCC--CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCc
Q 037138 144 LEKVWRCLGEE--RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKD 198 (806)
Q Consensus 144 ~~~l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 198 (806)
+..+-+.|..+ .-.++.|.|.+|+|||||+.++..... ..-..++|++....
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a---~~g~kvlYvs~EEs 133 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA---KNQMKVLYVSGEES 133 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEECcCC
Confidence 34444455432 457999999999999999999987762 11235788876543
No 463
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.35 E-value=0.11 Score=50.58 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|.|+.|.|||||.+.+..-.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998864
No 464
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.34 E-value=0.05 Score=57.22 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=38.0
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|.+..++.+.-.+.+.+..-+-+.|.+|+||||+|+.+..-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 4579999999888766655556678999999999999999997765
No 465
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.34 E-value=0.046 Score=54.81 Aligned_cols=62 Identities=23% Similarity=0.301 Sum_probs=45.2
Q ss_pred HHHHHHhc--CCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHH
Q 037138 145 EKVWRCLG--EERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEK 207 (806)
Q Consensus 145 ~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 207 (806)
.+++..+. .++..+|||.|.||+|||||.-.+.... ...++--.++-|+-|.+++--.|+.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCcccccc
Confidence 34555553 3678899999999999999999998887 44555556677777777765555544
No 466
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.32 E-value=0.15 Score=55.32 Aligned_cols=88 Identities=25% Similarity=0.261 Sum_probs=52.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC--------CCCHHHH---
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE--------NRSLEER--- 223 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~--------~~~~~~~--- 223 (806)
.-..++|+|..|+|||||++.++... . . ...++...-.+...+.+.....+..-+... ..+...+
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~-~--~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNA-K--A-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC-C--C-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 45688999999999999999998875 1 1 122333222233566666665554432211 1222111
Q ss_pred ---HHHHHHHh--CCCcEEEEEecCCCc
Q 037138 224 ---ASGIFKIL--SKKKFLLLLDDVWER 246 (806)
Q Consensus 224 ---~~~l~~~l--~~k~~LlvlDdv~~~ 246 (806)
+..+.+++ +++++|+++||+-..
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 11233333 589999999998653
No 467
>PRK14530 adenylate kinase; Provisional
Probab=94.31 E-value=0.035 Score=55.01 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=21.8
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998876
No 468
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.29 E-value=0.24 Score=53.63 Aligned_cols=86 Identities=29% Similarity=0.399 Sum_probs=51.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCc-ccHHHHHHHHHHHhCCCC--------CCCHHHH--
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGLLE--------NRSLEER-- 223 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~--------~~~~~~~-- 223 (806)
.-..++|+|..|+|||||++.+.+.. . .+..+...+... ..+.++.......-.... ..+...+
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~-~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~ 210 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYT-E----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLR 210 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCC-C----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 44679999999999999999888765 1 234445555554 345555555543321111 2222111
Q ss_pred ----HHHHHHHh--CCCcEEEEEecCCC
Q 037138 224 ----ASGIFKIL--SKKKFLLLLDDVWE 245 (806)
Q Consensus 224 ----~~~l~~~l--~~k~~LlvlDdv~~ 245 (806)
+-.+.+++ +++.+|+++||+-.
T Consensus 211 a~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 211 AAFYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 11233443 68999999999843
No 469
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.25 Score=57.93 Aligned_cols=101 Identities=16% Similarity=0.281 Sum_probs=67.9
Q ss_pred CccccchHHHHHHHHHhcC------C--CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLGE------E--RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQE 206 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 206 (806)
..++|-++.+..|.+.+.. + ......+.|+.|+|||-||++++.-. .+..+..+-++.|. ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse------~~e 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSE------FQE 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhh------hhh
Confidence 3467888888888887743 2 45678899999999999999999876 45555555555443 222
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHhCCCcE-EEEEecCCC
Q 037138 207 KIGERIGLLENRSLEERASGIFKILSKKKF-LLLLDDVWE 245 (806)
Q Consensus 207 ~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~-LlvlDdv~~ 245 (806)
+.+-.+.+...-..+....|.+.++.++| +|+||||+.
T Consensus 633 -vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 633 -VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred -hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhh
Confidence 33333444333333444567788888887 677899975
No 470
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.26 E-value=0.051 Score=55.64 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=36.3
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKD 198 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~ 198 (806)
..-+++.|+|.+|+|||++|.++.... ......++||+....
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC
Confidence 466899999999999999999999987 445888999998764
No 471
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.26 E-value=0.091 Score=56.62 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 143 TLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 143 ~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+.+++.+.......+.|.|.||+|||+|.+++.+..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 34556666666677889999999999999999999987
No 472
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.26 E-value=0.16 Score=55.95 Aligned_cols=85 Identities=20% Similarity=0.279 Sum_probs=46.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcc--cHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHh
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDM--QLERIQEKIGERIGLLE--NRSLEERASGIFKIL 231 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~--~~~~~~~~~~l~~~l 231 (806)
..|++++|+.|+||||++.+++.... .+..-..+..|+.. .+ ...+-++...+..+... ..+..+....+ ..+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~-~~~G~~kV~LI~~D-t~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L 332 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV-MRHGASKVALLTTD-SYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SEL 332 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH-HhcCCCeEEEEeCC-ccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hhc
Confidence 47999999999999999999998651 12112244555532 23 33334444455555433 22222222222 234
Q ss_pred CCCcEEEEEecCC
Q 037138 232 SKKKFLLLLDDVW 244 (806)
Q Consensus 232 ~~k~~LlvlDdv~ 244 (806)
.++ -.+++|-.-
T Consensus 333 ~d~-d~VLIDTaG 344 (484)
T PRK06995 333 RNK-HIVLIDTIG 344 (484)
T ss_pred cCC-CeEEeCCCC
Confidence 444 366777653
No 473
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.23 E-value=0.048 Score=53.61 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=27.2
Q ss_pred HhcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 150 CLGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 150 ~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+.+.++++|+++|..|+|||||..++....
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455789999999999999999999998875
No 474
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.19 E-value=0.27 Score=55.22 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=41.7
Q ss_pred HHHHHHhcCC--CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhC
Q 037138 145 EKVWRCLGEE--RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIG 213 (806)
Q Consensus 145 ~~l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 213 (806)
..+-+.|..+ .-+++.|.|++|+|||||+.++..... ..-..+++++.... ..++...+ ++++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eEs--~~~i~~~~-~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEES--RAQLLRNA-YSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCC--HHHHHHHH-HHcC
Confidence 3444455442 567999999999999999999988762 23356788776553 34444443 4443
No 475
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.18 E-value=0.13 Score=50.62 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q 037138 159 IGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~ 180 (806)
|.|.|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998875
No 476
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=94.14 E-value=0.17 Score=55.39 Aligned_cols=90 Identities=18% Similarity=0.216 Sum_probs=55.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCC--eEEEEEeCCcc-cHHHHHHHHHHHhCCCC--------CCCHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFD--VVIWVVVSKDM-QLERIQEKIGERIGLLE--------NRSLEER 223 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~--~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~ 223 (806)
.-.-++|.|..|+|||||+..+.+.. ...+.+. .++++-+++.. .+.++.+.+...-.... ..+...+
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 34578999999999999999998865 2211111 56667676554 56666666654422221 1211111
Q ss_pred ------HHHHHHHh---CCCcEEEEEecCCC
Q 037138 224 ------ASGIFKIL---SKKKFLLLLDDVWE 245 (806)
Q Consensus 224 ------~~~l~~~l---~~k~~LlvlDdv~~ 245 (806)
+-.+.+++ +++++|+++||+-.
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 12244555 47899999999854
No 477
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.14 E-value=0.035 Score=65.33 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=22.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhh
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNK 179 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~ 179 (806)
+..+++|.|+.|.||||+.+.+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 4579999999999999999998765
No 478
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.09 E-value=0.28 Score=53.65 Aligned_cols=88 Identities=20% Similarity=0.260 Sum_probs=48.7
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCC--------CCCCHHH---
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLL--------ENRSLEE--- 222 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~--------~~~~~~~--- 222 (806)
..-..++|+|..|+|||||++.+.... .. -..++++.--+..++.++....+..-... ...+...
T Consensus 156 ~~Gq~i~I~G~sG~GKStLl~~I~~~~-~~---~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~ 231 (438)
T PRK07721 156 GKGQRVGIFAGSGVGKSTLMGMIARNT-SA---DLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIK 231 (438)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccc-CC---CeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHH
Confidence 456789999999999999999988765 21 12344433223333444433322111110 0111111
Q ss_pred ---HHHHHHHHh--CCCcEEEEEecCCC
Q 037138 223 ---RASGIFKIL--SKKKFLLLLDDVWE 245 (806)
Q Consensus 223 ---~~~~l~~~l--~~k~~LlvlDdv~~ 245 (806)
.+-.+.+++ +++.+|+++||+-.
T Consensus 232 ~~~~a~~iAEyfr~~g~~Vll~~Dsltr 259 (438)
T PRK07721 232 GAYTATAIAEYFRDQGLNVMLMMDSVTR 259 (438)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeChHH
Confidence 111233444 68999999999853
No 479
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.08 E-value=0.041 Score=51.20 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=20.4
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q 037138 159 IGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~ 180 (806)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 480
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.08 E-value=0.08 Score=55.13 Aligned_cols=49 Identities=29% Similarity=0.326 Sum_probs=36.1
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHH
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEK 207 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 207 (806)
.+++.+.|.|||||||+|.+.+-... .....++-|+..+..++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA---~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA---ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH---HcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999766652 22245777777776666666554
No 481
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.08 E-value=0.22 Score=53.90 Aligned_cols=90 Identities=22% Similarity=0.279 Sum_probs=57.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCC--CCCC---------eEEEEEeCCcccHHHHHHHHHHHhC-CCC------
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTP--NDFD---------VVIWVVVSKDMQLERIQEKIGERIG-LLE------ 216 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~~F~---------~~~wv~~s~~~~~~~~~~~i~~~l~-~~~------ 216 (806)
.-.-++|.|.+|+|||||+.++.+.. ... .-.| .++++-+++.....+.+.+.+..-+ ...
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~-~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQA-GLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhh-ccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 44578999999999999999998875 210 0012 5677778877666666666655544 221
Q ss_pred --CCCHHHH------HHHHHHHh---CCCcEEEEEecCCC
Q 037138 217 --NRSLEER------ASGIFKIL---SKKKFLLLLDDVWE 245 (806)
Q Consensus 217 --~~~~~~~------~~~l~~~l---~~k~~LlvlDdv~~ 245 (806)
..+.-.+ +-.+.+++ +++.+|+++||+-.
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 2222111 11244554 46999999999853
No 482
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.07 E-value=0.041 Score=54.06 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+|+|+|++|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999875
No 483
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.07 E-value=0.05 Score=52.70 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+|.|.|.+|+||||+|+.++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999875
No 484
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.06 E-value=0.047 Score=51.84 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...|.|+|+.|+||||+|+.+....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3469999999999999999999876
No 485
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.06 E-value=0.041 Score=53.06 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.6
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.++.|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997765
No 486
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=0.43 Score=53.56 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=35.7
Q ss_pred CccccchHHHHHH---HHHhcCC---------CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKV---WRCLGEE---------RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l---~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.++.|.|+.++++ +++|.++ -++-|..+|++|.|||.||++++...
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA 207 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 207 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc
Confidence 4568988776665 4455543 25678899999999999999999987
No 487
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.05 E-value=0.069 Score=56.98 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=59.5
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHHhC
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE-RIQEKIGERIGLLENRSLEERASGIFKILS 232 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~ 232 (806)
.....|.|.|+.|.||||+++.+.... .......++. +.++.... .-...+..+.. .........+.++..++
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E~~~~~~~~~i~q~e--vg~~~~~~~~~l~~~lr 193 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIEYVHRNKRSLINQRE--VGLDTLSFANALRAALR 193 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChhhhccCccceEEccc--cCCCCcCHHHHHHHhhc
Confidence 345789999999999999999988765 2333444443 22221110 00000011100 01122334556777888
Q ss_pred CCcEEEEEecCCCccCcccccccCCCCCCcEEEEecC
Q 037138 233 KKKFLLLLDDVWERIDLTKVGIPFPSKNTSKVVFTTR 269 (806)
Q Consensus 233 ~k~~LlvlDdv~~~~~~~~~~~~~~~~~~s~iivTtr 269 (806)
..+=.+++|++.+...+....... ..|..|+.|..
T Consensus 194 ~~pd~i~vgEird~~~~~~~l~aa--~tGh~v~~T~H 228 (343)
T TIGR01420 194 EDPDVILIGEMRDLETVELALTAA--ETGHLVFGTLH 228 (343)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHH--HcCCcEEEEEc
Confidence 899999999998765554321111 33545555543
No 488
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.04 E-value=0.088 Score=54.69 Aligned_cols=46 Identities=26% Similarity=0.409 Sum_probs=41.2
Q ss_pred CccccchHHHHHHHHHhcC------CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGE------ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|.++.++++++.+.. ..-+++-++|+.|.||||||..+.+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999998843 467899999999999999999999887
No 489
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=94.03 E-value=0.5 Score=49.29 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=37.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcc-cHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDM-QLERIQEKI 208 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i 208 (806)
+-..++|.|..|+|||+|++++.+.. +-+.++++-+.+.. .+.+++.++
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 44589999999999999999998864 23578888887654 455666664
No 490
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.03 E-value=0.047 Score=48.16 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.5
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q 037138 159 IGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~ 180 (806)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999876
No 491
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.01 E-value=0.071 Score=49.25 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 142 STLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 142 ~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++++.+.+.+ +++.++|..|||||||+..+..+.
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 346677777754 799999999999999999998874
No 492
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.01 E-value=0.05 Score=46.37 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.1
Q ss_pred ceEEEEEccCCCCHHHHHHHHH
Q 037138 156 VGIIGLYGMGGVGKTTLLAQIN 177 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~ 177 (806)
-..++|+|+.|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 493
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.00 E-value=0.037 Score=52.12 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=20.0
Q ss_pred EEEEccCCCCHHHHHHHHHhhc
Q 037138 159 IGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 159 i~I~G~~GiGKTtLa~~v~~~~ 180 (806)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 494
>PLN02924 thymidylate kinase
Probab=93.99 E-value=0.2 Score=49.58 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=23.4
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
-..|+|-|..|+||||+|+.+++..
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l 40 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFL 40 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999998
No 495
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.95 E-value=0.055 Score=57.65 Aligned_cols=97 Identities=22% Similarity=0.227 Sum_probs=55.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCC----CCCCeEEEEEeCCcccHHHHHHHHHHHhCCC--CCCCHHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTP----NDFDVVIWVVVSKDMQLERIQEKIGERIGLL--ENRSLEERASGIF 228 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~l~ 228 (806)
.++=+-|||..|.|||-|+-.+|+.. .++ -|| .....++-+.+... ....+. .+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~l-p~~~k~R~HF--------------h~Fm~~vh~~l~~~~~~~~~l~----~va 121 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSL-PIKRKRRVHF--------------HEFMLDVHSRLHQLRGQDDPLP----QVA 121 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhC-Cccccccccc--------------cHHHHHHHHHHHHHhCCCccHH----HHH
Confidence 56789999999999999999999987 332 233 22333333332211 122223 334
Q ss_pred HHhCCCcEEEEEecCCC--ccCcccccccCCC--CCCcEEEEecCC
Q 037138 229 KILSKKKFLLLLDDVWE--RIDLTKVGIPFPS--KNTSKVVFTTRL 270 (806)
Q Consensus 229 ~~l~~k~~LlvlDdv~~--~~~~~~~~~~~~~--~~~s~iivTtr~ 270 (806)
+.+.++..||.||+..= ..+---+...+.. ..|..+|.||..
T Consensus 122 ~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~ 167 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNR 167 (362)
T ss_pred HHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCC
Confidence 45566777999998742 2222122223333 456666666654
No 496
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.94 E-value=0.05 Score=49.49 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+++.|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999998887654
No 497
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=93.94 E-value=0.16 Score=49.76 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=23.7
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+....|+|+|.+|+|||||...+.+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 456789999999999999999998764
No 498
>PRK14527 adenylate kinase; Provisional
Probab=93.91 E-value=0.054 Score=52.50 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+|.|+|++|+||||+|+.++...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 499
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.90 E-value=0.057 Score=52.67 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=24.6
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
....+|+|+|++|+||||||+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999875
No 500
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.86 E-value=0.034 Score=53.60 Aligned_cols=36 Identities=28% Similarity=0.131 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 144 LEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 144 ~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+++...... -..+.|+|+.|+||||+++.+....
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33444433333 4689999999999999999998765
Done!