Query 037138
Match_columns 806
No_of_seqs 699 out of 3710
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 15:11:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037138.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037138hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.3E-47 1.1E-51 432.3 20.6 293 138-450 131-470 (549)
2 1vt4_I APAF-1 related killer D 100.0 3.2E-38 1.1E-42 360.3 18.6 269 135-444 128-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.9E-36 6.6E-41 381.6 27.7 293 134-450 123-451 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 6.4E-34 2.2E-38 328.5 21.6 288 134-447 123-448 (591)
5 4fmz_A Internalin; leucine ric 99.9 2.1E-22 7.3E-27 216.1 20.1 243 461-747 47-297 (347)
6 2id5_A Lingo-1, leucine rich r 99.9 2E-22 6.7E-27 226.4 16.7 289 463-783 16-332 (477)
7 3o6n_A APL1; leucine-rich repe 99.9 7.6E-22 2.6E-26 215.3 17.2 135 478-626 43-178 (390)
8 3oja_B Anopheles plasmodium-re 99.9 7.6E-22 2.6E-26 227.4 16.3 135 478-626 49-184 (597)
9 3o6n_A APL1; leucine-rich repe 99.9 3.2E-22 1.1E-26 218.4 11.2 149 461-626 48-199 (390)
10 1o6v_A Internalin A; bacterial 99.9 4.2E-21 1.4E-25 214.5 20.5 116 461-584 49-164 (466)
11 3v47_A TOLL-like receptor 5B a 99.9 1.7E-21 5.9E-26 217.3 17.4 133 461-593 33-171 (455)
12 4fcg_A Uncharacterized protein 99.9 1.2E-21 4.2E-26 207.6 14.6 224 479-782 80-312 (328)
13 3v47_A TOLL-like receptor 5B a 99.9 2.9E-21 9.8E-26 215.6 18.1 152 462-627 14-168 (455)
14 2z7x_B TOLL-like receptor 1, v 99.9 1.8E-21 6.1E-26 221.2 16.7 145 461-625 3-150 (520)
15 2z81_A CD282 antigen, TOLL-lik 99.9 1.4E-21 4.9E-26 223.6 14.0 133 461-593 29-165 (549)
16 3t6q_A CD180 antigen; protein- 99.9 3.9E-21 1.3E-25 222.8 17.7 127 461-590 36-167 (606)
17 3oja_B Anopheles plasmodium-re 99.9 6.5E-22 2.2E-26 228.0 11.0 130 461-591 54-186 (597)
18 4ecn_A Leucine-rich repeat pro 99.9 1.2E-21 4.2E-26 230.8 13.4 150 461-627 451-633 (876)
19 1ogq_A PGIP-2, polygalacturona 99.9 1.7E-21 5.7E-26 205.4 12.7 223 480-747 50-278 (313)
20 4ecn_A Leucine-rich repeat pro 99.9 1.8E-21 6.3E-26 229.3 14.2 224 468-713 435-709 (876)
21 3rgz_A Protein brassinosteroid 99.8 4.2E-21 1.4E-25 227.8 16.9 134 479-626 393-527 (768)
22 3vq2_A TLR4, TOLL-like recepto 99.8 8.3E-21 2.8E-25 220.0 18.9 149 463-626 16-166 (606)
23 3rgz_A Protein brassinosteroid 99.8 2.3E-21 8E-26 230.0 14.4 237 461-714 272-551 (768)
24 4fmz_A Internalin; leucine ric 99.8 1.5E-20 5.1E-25 201.7 18.8 267 473-783 37-323 (347)
25 3vq2_A TLR4, TOLL-like recepto 99.8 4.5E-21 1.5E-25 222.3 15.7 130 461-591 35-168 (606)
26 3j0a_A TOLL-like receptor 5; m 99.8 1.2E-20 4.1E-25 226.3 19.8 150 463-626 9-161 (844)
27 2ft3_A Biglycan; proteoglycan, 99.8 1.1E-20 3.8E-25 201.2 17.2 279 461-782 36-331 (332)
28 1ogq_A PGIP-2, polygalacturona 99.8 2E-21 7E-26 204.6 11.1 249 459-752 51-306 (313)
29 4eco_A Uncharacterized protein 99.8 2.4E-21 8.1E-26 224.6 11.8 305 477-798 203-600 (636)
30 3bz5_A Internalin-J, INLJ; leu 99.8 8.9E-21 3E-25 210.2 15.6 282 461-783 45-351 (457)
31 1xku_A Decorin; proteoglycan, 99.8 2.1E-20 7.2E-25 198.9 17.6 231 461-713 34-275 (330)
32 2z63_A TOLL-like receptor 4, v 99.8 1.8E-20 6E-25 215.6 17.8 129 461-590 31-163 (570)
33 3bz5_A Internalin-J, INLJ; leu 99.8 1.3E-20 4.3E-25 209.0 15.8 290 477-797 39-351 (457)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.8E-20 9.6E-25 213.1 19.3 125 461-590 34-160 (562)
35 1ziw_A TOLL-like receptor 3; i 99.8 2.8E-20 9.5E-25 218.6 18.3 149 463-626 9-158 (680)
36 1o6v_A Internalin A; bacterial 99.8 4.3E-20 1.5E-24 206.3 18.7 120 461-589 71-190 (466)
37 3j0a_A TOLL-like receptor 5; m 99.8 3.3E-20 1.1E-24 222.5 18.9 133 461-593 27-165 (844)
38 2id5_A Lingo-1, leucine rich r 99.8 3.4E-20 1.1E-24 208.1 17.7 153 461-628 35-191 (477)
39 3t6q_A CD180 antigen; protein- 99.8 5.2E-20 1.8E-24 213.3 19.5 153 461-626 132-363 (606)
40 4eco_A Uncharacterized protein 99.8 5.8E-21 2E-25 221.3 9.6 217 478-713 247-525 (636)
41 1ziw_A TOLL-like receptor 3; i 99.8 5E-20 1.7E-24 216.4 16.3 130 460-591 27-160 (680)
42 2z7x_B TOLL-like receptor 1, v 99.8 6.9E-20 2.4E-24 208.0 16.0 121 461-588 24-150 (520)
43 2z80_A TOLL-like receptor 2, v 99.8 2.7E-20 9.1E-25 200.1 11.4 255 463-747 36-311 (353)
44 4fcg_A Uncharacterized protein 99.8 9E-20 3.1E-24 193.2 14.6 234 502-797 79-313 (328)
45 2z81_A CD282 antigen, TOLL-lik 99.8 2.9E-19 1E-23 204.4 17.6 125 461-586 53-182 (549)
46 2z63_A TOLL-like receptor 4, v 99.8 3.8E-19 1.3E-23 204.4 18.4 147 466-627 15-163 (570)
47 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5.1E-19 1.8E-23 202.6 19.0 121 461-588 55-181 (562)
48 3zyi_A Leucine-rich repeat-con 99.8 3.2E-19 1.1E-23 198.4 16.6 241 462-747 58-300 (452)
49 3zyj_A Leucine-rich repeat-con 99.8 4.6E-19 1.6E-23 196.4 16.6 241 462-747 47-289 (440)
50 2z66_A Variable lymphocyte rec 99.8 5E-19 1.7E-23 186.1 13.6 243 462-747 11-258 (306)
51 4g8a_A TOLL-like receptor 4; l 99.8 1.3E-18 4.5E-23 202.8 17.2 130 460-590 54-187 (635)
52 1xku_A Decorin; proteoglycan, 99.8 4.6E-18 1.6E-22 180.7 18.5 261 481-782 32-304 (330)
53 2ft3_A Biglycan; proteoglycan, 99.8 3.5E-18 1.2E-22 181.8 17.3 260 481-782 34-305 (332)
54 1ozn_A Reticulon 4 receptor; N 99.8 5.7E-18 2E-22 176.0 16.0 219 462-747 15-235 (285)
55 3zyj_A Leucine-rich repeat-con 99.8 3.1E-18 1.1E-22 189.7 14.7 221 461-713 67-291 (440)
56 3zyi_A Leucine-rich repeat-con 99.8 3E-18 1E-22 190.5 14.4 221 461-713 78-302 (452)
57 2z80_A TOLL-like receptor 2, v 99.8 3.7E-18 1.3E-22 183.3 14.0 237 460-714 54-314 (353)
58 3o53_A Protein LRIM1, AGAP0063 99.7 1.9E-18 6.6E-23 182.3 10.2 250 477-781 31-283 (317)
59 3g06_A SSPH2 (leucine-rich rep 99.7 2.8E-17 9.7E-22 187.4 19.4 113 461-590 43-155 (622)
60 1h6u_A Internalin H; cell adhe 99.7 5.9E-18 2E-22 177.6 12.3 127 477-626 38-164 (308)
61 3oja_A Leucine-rich immune mol 99.7 2.6E-18 9E-23 192.1 9.7 235 477-766 31-267 (487)
62 4g8a_A TOLL-like receptor 4; l 99.7 3E-17 1E-21 191.2 18.8 145 468-627 41-187 (635)
63 1jl5_A Outer protein YOPM; leu 99.7 8.9E-18 3.1E-22 185.9 13.0 216 461-713 14-249 (454)
64 3o53_A Protein LRIM1, AGAP0063 99.7 9.4E-19 3.2E-23 184.8 4.5 242 460-755 36-280 (317)
65 3rfs_A Internalin B, repeat mo 99.7 1E-17 3.5E-22 172.5 11.2 126 461-589 44-170 (272)
66 1h6u_A Internalin H; cell adhe 99.7 3.1E-17 1E-21 172.1 14.3 186 461-713 44-229 (308)
67 1ozn_A Reticulon 4 receptor; N 99.7 3.5E-17 1.2E-21 170.0 14.6 224 483-784 14-238 (285)
68 2z66_A Variable lymphocyte rec 99.7 1.6E-17 5.4E-22 174.6 11.3 222 461-714 31-261 (306)
69 1wwl_A Monocyte differentiatio 99.7 2.3E-17 8E-22 173.6 12.3 228 482-784 65-309 (312)
70 2o6q_A Variable lymphocyte rec 99.7 5.9E-17 2E-21 166.7 15.0 126 482-624 18-144 (270)
71 2z62_A TOLL-like receptor 4, v 99.7 7.7E-17 2.6E-21 166.5 15.8 146 468-628 17-164 (276)
72 1wwl_A Monocyte differentiatio 99.7 3.3E-18 1.1E-22 180.1 5.2 252 477-799 40-310 (312)
73 1jl5_A Outer protein YOPM; leu 99.7 1.1E-16 3.7E-21 177.2 16.8 114 462-589 95-208 (454)
74 2o6q_A Variable lymphocyte rec 99.7 9.7E-17 3.3E-21 165.1 15.3 197 461-713 19-217 (270)
75 2xwt_C Thyrotropin receptor; s 99.7 4.2E-17 1.4E-21 164.6 11.0 211 466-749 19-238 (239)
76 1p9a_G Platelet glycoprotein I 99.7 7.2E-17 2.5E-21 167.6 13.0 195 461-713 13-207 (290)
77 3oja_A Leucine-rich immune mol 99.7 9.4E-17 3.2E-21 179.4 12.1 217 501-783 31-249 (487)
78 3rfs_A Internalin B, repeat mo 99.7 1.2E-16 4E-21 164.7 11.6 181 475-713 36-217 (272)
79 1p9a_G Platelet glycoprotein I 99.7 2.4E-16 8.3E-21 163.6 13.3 170 461-675 34-206 (290)
80 3g06_A SSPH2 (leucine-rich rep 99.7 5.2E-16 1.8E-20 177.0 16.9 226 461-748 64-295 (622)
81 1z7x_W Ribonuclease inhibitor; 99.7 1.9E-17 6.4E-22 185.0 4.7 157 461-626 6-183 (461)
82 1h6t_A Internalin B; cell adhe 99.7 1.4E-16 4.8E-21 165.5 10.0 172 475-713 41-212 (291)
83 1z7x_W Ribonuclease inhibitor; 99.6 6E-17 2.1E-21 180.8 5.4 296 481-798 86-440 (461)
84 3m19_A Variable lymphocyte rec 99.6 9.4E-16 3.2E-20 155.8 12.9 174 461-676 17-191 (251)
85 2ast_B S-phase kinase-associat 99.6 3.4E-16 1.2E-20 166.8 9.7 204 504-747 70-282 (336)
86 2z62_A TOLL-like receptor 4, v 99.6 1.3E-15 4.3E-20 157.4 13.6 201 460-713 30-236 (276)
87 1h6t_A Internalin B; cell adhe 99.6 3.3E-16 1.1E-20 162.7 9.1 190 478-748 22-211 (291)
88 1m9s_A Internalin B; cell inva 99.6 5.3E-16 1.8E-20 176.8 11.5 129 475-626 38-166 (605)
89 2xwt_C Thyrotropin receptor; s 99.6 6.3E-16 2.1E-20 155.9 8.7 194 461-712 34-237 (239)
90 1m9s_A Internalin B; cell inva 99.6 5.8E-16 2E-20 176.5 8.6 192 477-713 18-209 (605)
91 4ay9_X Follicle-stimulating ho 99.6 4.2E-15 1.5E-19 159.0 13.0 231 462-711 13-256 (350)
92 4glp_A Monocyte differentiatio 99.6 1.8E-15 6E-20 159.1 9.5 112 478-590 115-238 (310)
93 2ca6_A RAN GTPase-activating p 99.6 8.9E-16 3.1E-20 166.9 7.5 246 477-748 29-314 (386)
94 1xeu_A Internalin C; cellular 99.6 8.1E-16 2.8E-20 157.1 6.7 170 476-713 15-184 (263)
95 2ca6_A RAN GTPase-activating p 99.6 3.8E-16 1.3E-20 169.8 4.2 272 481-786 10-318 (386)
96 4ezg_A Putative uncharacterize 99.6 4.8E-15 1.6E-19 144.5 11.4 147 461-626 47-194 (197)
97 2v9t_B SLIT homolog 2 protein 99.6 6.6E-15 2.3E-19 146.0 11.8 150 462-626 15-165 (220)
98 2o6s_A Variable lymphocyte rec 99.6 1.1E-14 3.9E-19 143.2 12.9 109 480-589 28-137 (208)
99 4ay9_X Follicle-stimulating ho 99.6 1.3E-14 4.5E-19 155.1 14.5 221 483-754 12-240 (350)
100 3m19_A Variable lymphocyte rec 99.6 8.2E-15 2.8E-19 148.9 11.9 153 461-627 38-193 (251)
101 2qen_A Walker-type ATPase; unk 99.6 9.5E-14 3.3E-18 148.7 20.8 272 135-444 12-348 (350)
102 4glp_A Monocyte differentiatio 99.6 1.1E-14 3.9E-19 152.9 12.5 231 481-784 65-307 (310)
103 1w5s_A Origin recognition comp 99.6 2.1E-14 7.3E-19 157.5 15.0 276 135-429 22-371 (412)
104 3ogk_B Coronatine-insensitive 99.6 1.1E-14 3.8E-19 168.0 12.7 220 478-712 162-447 (592)
105 4ezg_A Putative uncharacterize 99.5 1.2E-14 4.2E-19 141.5 10.0 151 502-713 42-193 (197)
106 3goz_A Leucine-rich repeat-con 99.5 6.8E-15 2.3E-19 158.2 8.3 245 478-747 20-294 (362)
107 2v70_A SLIT-2, SLIT homolog 2 99.5 2.3E-14 7.7E-19 142.1 11.5 151 461-626 14-166 (220)
108 2fna_A Conserved hypothetical 99.5 4.5E-13 1.5E-17 143.8 22.4 270 135-443 13-355 (357)
109 3goz_A Leucine-rich repeat-con 99.5 3.4E-15 1.2E-19 160.6 5.7 268 485-785 3-298 (362)
110 2ast_B S-phase kinase-associat 99.5 6.4E-15 2.2E-19 156.9 6.9 200 461-711 73-282 (336)
111 3e6j_A Variable lymphocyte rec 99.5 3.9E-14 1.3E-18 141.4 11.3 149 461-626 22-172 (229)
112 1xeu_A Internalin C; cellular 99.5 2.1E-14 7.3E-19 146.6 7.8 156 467-675 28-183 (263)
113 3ogk_B Coronatine-insensitive 99.5 2.1E-14 7.1E-19 165.7 8.6 269 478-783 218-525 (592)
114 2v9t_B SLIT homolog 2 protein 99.5 6E-14 2E-18 139.1 10.0 149 483-675 14-163 (220)
115 3cvr_A Invasion plasmid antige 99.5 1.4E-13 4.7E-18 155.1 12.4 185 461-717 62-246 (571)
116 1dce_A Protein (RAB geranylger 99.5 2E-15 6.8E-20 171.0 -3.5 178 477-713 346-545 (567)
117 3e6j_A Variable lymphocyte rec 99.5 1.9E-13 6.4E-18 136.5 11.1 130 461-591 43-174 (229)
118 2xot_A Amphoterin-induced prot 99.4 1.2E-13 4.2E-18 148.2 10.0 156 461-628 21-178 (361)
119 2xot_A Amphoterin-induced prot 99.4 2.4E-13 8.2E-18 145.9 9.2 152 461-626 42-202 (361)
120 2o6s_A Variable lymphocyte rec 99.4 6.6E-13 2.3E-17 130.5 11.6 130 461-591 31-163 (208)
121 2v70_A SLIT-2, SLIT homolog 2 99.4 3.5E-13 1.2E-17 133.6 9.4 130 461-591 35-168 (220)
122 3cvr_A Invasion plasmid antige 99.4 6.6E-13 2.3E-17 149.5 12.1 161 460-677 82-243 (571)
123 2p1m_B Transport inhibitor res 99.4 1.5E-13 5.1E-18 158.6 6.8 17 767-783 502-518 (594)
124 1a9n_A U2A', U2A'; complex (nu 99.4 4.1E-13 1.4E-17 128.0 7.4 143 471-627 10-154 (176)
125 2ell_A Acidic leucine-rich nuc 99.4 8E-13 2.7E-17 125.0 9.3 136 478-627 22-161 (168)
126 1w8a_A SLIT protein; signaling 99.4 1E-12 3.4E-17 127.2 9.8 129 461-591 11-141 (192)
127 2p1m_B Transport inhibitor res 99.4 1.5E-13 5.3E-18 158.4 4.0 261 461-745 108-405 (594)
128 2o6r_A Variable lymphocyte rec 99.4 2.7E-12 9.3E-17 122.5 11.9 128 462-591 11-139 (177)
129 2wfh_A SLIT homolog 2 protein 99.4 2.3E-12 7.9E-17 124.6 11.4 125 462-589 14-139 (193)
130 2ell_A Acidic leucine-rich nuc 99.4 6E-13 2E-17 125.9 6.7 128 460-590 26-161 (168)
131 2je0_A Acidic leucine-rich nuc 99.3 9.7E-13 3.3E-17 121.7 6.7 129 478-621 15-148 (149)
132 4b8c_D Glucose-repressible alc 99.3 4.9E-13 1.7E-17 156.4 5.5 117 495-628 215-331 (727)
133 2qby_B CDC6 homolog 3, cell di 99.3 5.1E-11 1.8E-15 129.1 20.9 272 135-429 20-339 (384)
134 2je0_A Acidic leucine-rich nuc 99.3 8.7E-13 3E-17 122.0 5.5 122 460-584 19-148 (149)
135 1w8a_A SLIT protein; signaling 99.3 1.3E-12 4.5E-17 126.4 6.7 126 483-626 11-139 (192)
136 2wfh_A SLIT homolog 2 protein 99.3 2.7E-12 9.1E-17 124.2 8.7 126 483-626 13-139 (193)
137 1a9n_A U2A', U2A'; complex (nu 99.3 2E-12 6.8E-17 123.2 6.5 125 461-589 22-153 (176)
138 1dce_A Protein (RAB geranylger 99.3 4.8E-12 1.6E-16 143.3 9.6 123 481-619 442-566 (567)
139 1fnn_A CDC6P, cell division co 99.3 3.8E-10 1.3E-14 122.4 23.9 273 135-429 17-351 (389)
140 2v1u_A Cell division control p 99.3 9E-11 3.1E-15 127.3 18.2 273 135-429 19-351 (387)
141 2o6r_A Variable lymphocyte rec 99.2 1.6E-11 5.6E-16 117.0 9.7 129 482-627 9-138 (177)
142 1ds9_A Outer arm dynein; leuci 99.2 1.1E-12 3.8E-17 127.7 0.1 113 499-628 43-155 (198)
143 2qby_A CDC6 homolog 1, cell di 99.2 9.1E-11 3.1E-15 127.2 14.7 275 135-429 20-348 (386)
144 4b8c_D Glucose-repressible alc 99.2 7.8E-12 2.7E-16 146.2 6.4 113 477-593 221-333 (727)
145 2r9u_A Variable lymphocyte rec 99.2 3.3E-11 1.1E-15 114.3 8.7 104 483-590 15-119 (174)
146 3g39_A Variable lymphocyte rec 99.2 3.8E-11 1.3E-15 113.4 8.6 107 481-591 10-117 (170)
147 1njg_A DNA polymerase III subu 99.1 2.3E-10 7.9E-15 115.3 13.5 165 135-323 23-228 (250)
148 3qfl_A MLA10; coiled-coil, (CC 99.1 1.7E-10 5.9E-15 99.5 9.0 69 3-79 15-84 (115)
149 2chg_A Replication factor C sm 99.1 2.9E-10 9.9E-15 112.8 12.0 170 135-322 17-203 (226)
150 1ds9_A Outer arm dynein; leuci 99.1 6.3E-12 2.2E-16 122.3 -1.7 135 477-619 45-180 (198)
151 2r9u_A Variable lymphocyte rec 99.0 4.3E-10 1.5E-14 106.5 9.2 106 461-569 15-122 (174)
152 3g39_A Variable lymphocyte rec 99.0 4.8E-10 1.6E-14 105.8 9.4 103 461-564 12-115 (170)
153 1sxj_B Activator 1 37 kDa subu 98.9 1.4E-09 4.8E-14 114.6 9.5 171 135-323 21-210 (323)
154 3sb4_A Hypothetical leucine ri 98.9 1.9E-09 6.4E-14 113.9 9.2 250 479-777 48-327 (329)
155 2ifg_A High affinity nerve gro 98.9 3.8E-09 1.3E-13 112.5 9.7 103 484-590 12-117 (347)
156 3te6_A Regulatory protein SIR3 98.8 1.5E-08 5E-13 104.2 12.6 153 136-290 21-211 (318)
157 1hqc_A RUVB; extended AAA-ATPa 98.8 3.1E-08 1.1E-12 104.3 15.0 257 135-428 12-324 (324)
158 4fdw_A Leucine rich hypothetic 98.8 7.7E-08 2.6E-12 103.8 16.7 242 477-782 133-381 (401)
159 2ifg_A High affinity nerve gro 98.8 9.2E-09 3.1E-13 109.5 9.2 102 463-564 13-116 (347)
160 1iqp_A RFCS; clamp loader, ext 98.8 1.1E-08 3.9E-13 107.8 9.4 167 135-322 25-211 (327)
161 3un9_A NLR family member X1; l 98.7 1.4E-09 4.7E-14 116.4 0.8 138 480-627 72-225 (372)
162 3sb4_A Hypothetical leucine ri 98.7 1.7E-08 5.6E-13 106.6 8.5 172 479-707 100-327 (329)
163 2chq_A Replication factor C sm 98.6 1E-07 3.6E-12 100.0 10.5 165 135-320 17-201 (319)
164 4fdw_A Leucine rich hypothetic 98.6 3.6E-07 1.2E-11 98.6 14.2 198 481-713 158-357 (401)
165 3un9_A NLR family member X1; l 98.6 9.3E-09 3.2E-13 109.9 1.4 158 461-628 75-254 (372)
166 1jr3_A DNA polymerase III subu 98.6 2.7E-07 9.1E-12 99.2 12.5 169 135-323 16-221 (373)
167 1jbk_A CLPB protein; beta barr 98.5 9.8E-08 3.4E-12 91.8 6.6 46 135-180 22-67 (195)
168 3bos_A Putative DNA replicatio 98.4 2.3E-07 7.8E-12 92.9 6.8 158 135-321 28-215 (242)
169 3pvs_A Replication-associated 98.4 2.5E-06 8.7E-11 92.8 14.9 163 135-320 26-212 (447)
170 1sxj_D Activator 1 41 kDa subu 98.4 5.4E-07 1.8E-11 96.0 8.7 179 135-321 37-233 (353)
171 1sxj_A Activator 1 95 kDa subu 98.3 9.7E-07 3.3E-11 98.7 9.6 176 135-323 39-253 (516)
172 2z4s_A Chromosomal replication 98.3 9.4E-07 3.2E-11 96.4 8.2 165 136-319 106-302 (440)
173 3rw6_A Nuclear RNA export fact 98.3 3.9E-07 1.3E-11 91.3 4.5 105 477-582 138-257 (267)
174 3h4m_A Proteasome-activating n 98.3 1.6E-06 5.5E-11 89.2 9.2 157 135-315 17-222 (285)
175 1d2n_A N-ethylmaleimide-sensit 98.3 7.9E-06 2.7E-10 83.2 13.7 178 136-343 34-264 (272)
176 4fs7_A Uncharacterized protein 98.2 2.7E-06 9.3E-11 91.9 10.0 126 476-621 67-193 (394)
177 1sxj_E Activator 1 40 kDa subu 98.2 1.8E-06 6.3E-11 91.8 8.4 182 135-322 14-236 (354)
178 2ra8_A Uncharacterized protein 98.2 1.3E-06 4.3E-11 92.6 6.9 141 498-675 166-318 (362)
179 4fs7_A Uncharacterized protein 98.2 6E-06 2E-10 89.2 12.0 117 461-584 74-193 (394)
180 3syl_A Protein CBBX; photosynt 98.2 3E-06 1E-10 88.2 9.2 141 136-291 32-218 (309)
181 3uk6_A RUVB-like 2; hexameric 98.2 7.6E-06 2.6E-10 87.5 11.8 178 135-319 44-299 (368)
182 1sxj_C Activator 1 40 kDa subu 98.2 7.6E-06 2.6E-10 86.4 11.4 164 135-319 25-208 (340)
183 3pfi_A Holliday junction ATP-d 98.1 1E-05 3.5E-10 85.4 11.6 156 135-320 29-224 (338)
184 1xwi_A SKD1 protein; VPS4B, AA 98.1 8.1E-05 2.8E-09 77.5 18.2 168 135-323 12-223 (322)
185 3d8b_A Fidgetin-like protein 1 98.1 2.6E-05 8.8E-10 82.7 14.6 166 135-323 84-295 (357)
186 2p65_A Hypothetical protein PF 98.1 3.1E-06 1.1E-10 80.6 6.7 46 135-180 22-67 (187)
187 3eie_A Vacuolar protein sortin 98.1 3.4E-05 1.2E-09 80.5 14.9 165 135-322 18-227 (322)
188 1io0_A Tropomodulin; LRR prote 98.1 1.4E-06 4.8E-11 83.0 3.9 122 497-628 29-166 (185)
189 2qz4_A Paraplegin; AAA+, SPG7, 98.1 2.8E-05 9.6E-10 78.6 13.8 162 135-317 6-215 (262)
190 3b9p_A CG5977-PA, isoform A; A 98.1 5.9E-05 2E-09 77.8 15.9 165 135-322 21-232 (297)
191 1l8q_A Chromosomal replication 98.1 2.3E-05 8E-10 82.0 12.8 152 144-317 23-202 (324)
192 3u61_B DNA polymerase accessor 98.1 1.6E-05 5.6E-10 83.2 11.4 159 135-318 26-211 (324)
193 1a5t_A Delta prime, HOLB; zinc 98.0 5.6E-05 1.9E-09 79.3 15.2 160 140-323 7-205 (334)
194 2qp9_X Vacuolar protein sortin 98.0 6.3E-05 2.1E-09 79.6 15.3 167 135-323 51-261 (355)
195 3vfd_A Spastin; ATPase, microt 98.0 9.1E-05 3.1E-09 79.6 16.7 166 135-322 115-325 (389)
196 3cf0_A Transitional endoplasmi 98.0 5.6E-05 1.9E-09 78.0 14.3 161 135-318 15-223 (301)
197 4gt6_A Cell surface protein; l 98.0 7.7E-05 2.6E-09 80.4 15.3 104 477-584 60-168 (394)
198 2zan_A Vacuolar protein sortin 98.0 0.00023 7.7E-09 77.7 18.9 168 135-323 134-345 (444)
199 1io0_A Tropomodulin; LRR prote 97.9 4.2E-06 1.4E-10 79.6 3.7 112 477-589 33-164 (185)
200 2ra8_A Uncharacterized protein 97.9 1.5E-06 5.2E-11 91.9 0.6 139 477-627 169-321 (362)
201 3n70_A Transport activator; si 97.9 1.4E-05 4.9E-10 72.5 6.4 45 136-180 2-48 (145)
202 3e4g_A ATP synthase subunit S, 97.9 1.3E-05 4.3E-10 74.3 5.4 85 505-589 62-152 (176)
203 3pxg_A Negative regulator of g 97.8 9.5E-05 3.2E-09 81.3 13.0 137 136-291 181-339 (468)
204 3ec2_A DNA replication protein 97.8 1.2E-05 4.2E-10 76.1 4.7 115 140-270 19-142 (180)
205 4gt6_A Cell surface protein; l 97.8 0.00015 5E-09 78.2 13.0 104 477-585 84-191 (394)
206 2w58_A DNAI, primosome compone 97.7 3.1E-05 1.1E-09 74.8 6.0 111 143-270 37-158 (202)
207 3rw6_A Nuclear RNA export fact 97.7 3.1E-05 1.1E-09 77.5 5.8 78 478-557 168-257 (267)
208 3e4g_A ATP synthase subunit S, 97.7 3.7E-05 1.3E-09 71.2 5.8 93 520-624 53-150 (176)
209 1qvr_A CLPB protein; coiled co 97.7 6.3E-05 2.2E-09 89.4 9.1 143 135-290 170-345 (854)
210 4b4t_J 26S protease regulatory 97.7 0.00029 9.8E-09 74.2 12.6 158 135-316 148-354 (405)
211 1lv7_A FTSH; alpha/beta domain 97.7 0.00046 1.6E-08 69.3 13.8 46 135-180 12-69 (257)
212 3hu3_A Transitional endoplasmi 97.7 0.00026 8.8E-09 77.8 12.7 158 135-315 204-406 (489)
213 4h09_A Hypothetical leucine ri 97.6 0.0012 4.1E-08 70.6 17.4 80 478-561 44-123 (379)
214 2gno_A DNA polymerase III, gam 97.6 0.00018 6.1E-09 73.9 10.3 136 139-290 1-152 (305)
215 4b4t_L 26S protease subunit RP 97.6 0.00045 1.5E-08 74.0 13.7 158 135-316 181-387 (437)
216 3pxi_A Negative regulator of g 97.6 0.00048 1.7E-08 80.8 15.1 139 135-292 180-340 (758)
217 1in4_A RUVB, holliday junction 97.6 0.00039 1.3E-08 72.8 12.9 155 135-319 25-219 (334)
218 4b4t_I 26S protease regulatory 97.6 0.00092 3.1E-08 70.6 14.7 158 135-316 182-388 (437)
219 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00065 2.2E-08 79.9 14.1 144 135-290 186-362 (758)
220 4b4t_H 26S protease regulatory 97.5 0.0004 1.4E-08 74.1 11.0 157 136-316 210-415 (467)
221 4b4t_M 26S protease regulatory 97.5 0.00022 7.5E-09 76.3 8.9 158 135-316 181-387 (434)
222 3co5_A Putative two-component 97.5 5.3E-05 1.8E-09 68.5 3.2 45 136-180 5-51 (143)
223 4b4t_K 26S protease regulatory 97.4 0.00068 2.3E-08 72.5 11.2 46 135-180 172-230 (428)
224 2r62_A Cell division protease 97.4 9.5E-05 3.3E-09 75.0 4.3 46 135-180 11-68 (268)
225 1ofh_A ATP-dependent HSL prote 97.4 0.0007 2.4E-08 70.1 11.0 46 135-180 15-74 (310)
226 2ce7_A Cell division protein F 97.3 0.0006 2E-08 74.2 10.1 159 135-316 16-221 (476)
227 2kjq_A DNAA-related protein; s 97.3 0.00011 3.6E-09 66.9 3.1 100 137-270 20-124 (149)
228 4fcw_A Chaperone protein CLPB; 97.3 0.00026 8.8E-09 73.5 6.0 59 136-197 18-85 (311)
229 2c9o_A RUVB-like 1; hexameric 97.2 0.0016 5.5E-08 71.3 12.3 46 135-180 37-87 (456)
230 3cf2_A TER ATPase, transitiona 97.2 0.0015 5.1E-08 75.4 12.3 158 136-316 205-407 (806)
231 1ojl_A Transcriptional regulat 97.2 0.00092 3.2E-08 68.8 9.5 46 135-180 2-49 (304)
232 3t15_A Ribulose bisphosphate c 97.1 0.0055 1.9E-07 62.6 14.0 26 155-180 35-60 (293)
233 3m6a_A ATP-dependent protease 97.1 0.0047 1.6E-07 69.0 14.3 45 136-180 82-132 (543)
234 2x8a_A Nuclear valosin-contain 96.9 0.0081 2.8E-07 60.6 12.7 46 135-180 10-68 (274)
235 1ypw_A Transitional endoplasmi 96.9 0.0044 1.5E-07 72.7 12.0 46 135-180 204-262 (806)
236 1iy2_A ATP-dependent metallopr 96.8 0.013 4.3E-07 59.5 13.8 46 135-180 40-97 (278)
237 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.00063 2.2E-08 69.0 3.4 69 156-245 123-193 (331)
238 1ixz_A ATP-dependent metallopr 96.8 0.014 4.8E-07 58.1 13.4 46 135-180 16-73 (254)
239 2cvh_A DNA repair and recombin 96.7 0.0042 1.4E-07 60.4 8.8 84 155-245 19-116 (220)
240 2dhr_A FTSH; AAA+ protein, hex 96.6 0.012 4.1E-07 64.4 12.6 46 135-180 31-88 (499)
241 3hr8_A Protein RECA; alpha and 96.6 0.005 1.7E-07 64.2 8.7 83 155-245 60-150 (356)
242 3pxi_A Negative regulator of g 96.5 0.00083 2.8E-08 78.8 2.6 59 135-196 491-558 (758)
243 4h09_A Hypothetical leucine ri 96.4 0.0046 1.6E-07 66.0 7.5 127 477-621 214-341 (379)
244 2zr9_A Protein RECA, recombina 96.3 0.0099 3.4E-07 62.1 9.0 83 155-245 60-150 (349)
245 1n0w_A DNA repair protein RAD5 96.2 0.01 3.6E-07 58.6 8.1 89 155-245 23-130 (243)
246 3io5_A Recombination and repai 96.1 0.015 5E-07 58.8 8.9 84 157-246 29-123 (333)
247 1xp8_A RECA protein, recombina 96.1 0.014 4.7E-07 61.3 9.2 83 155-245 73-163 (366)
248 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.0051 1.8E-07 60.4 5.6 39 156-197 23-61 (235)
249 2z43_A DNA repair and recombin 96.1 0.024 8.4E-07 58.7 10.6 89 155-244 106-213 (324)
250 1g5t_A COB(I)alamin adenosyltr 96.0 0.0031 1.1E-07 59.1 3.2 113 155-270 27-162 (196)
251 3rfe_A Platelet glycoprotein I 96.0 0.0069 2.4E-07 53.2 5.2 55 532-589 12-68 (130)
252 2qgz_A Helicase loader, putati 96.0 0.006 2E-07 62.7 5.5 40 141-180 134-176 (308)
253 1v5w_A DMC1, meiotic recombina 96.0 0.026 8.9E-07 58.9 10.5 58 155-213 121-181 (343)
254 1rz3_A Hypothetical protein rb 95.9 0.0078 2.7E-07 57.6 5.4 42 139-180 2-46 (201)
255 2bjv_A PSP operon transcriptio 95.8 0.0082 2.8E-07 60.4 5.7 46 135-180 6-53 (265)
256 1u94_A RECA protein, recombina 95.7 0.021 7.2E-07 59.7 8.3 82 155-244 62-151 (356)
257 3c8u_A Fructokinase; YP_612366 95.7 0.0095 3.3E-07 57.4 5.1 39 142-180 6-46 (208)
258 3dm5_A SRP54, signal recogniti 95.6 0.042 1.4E-06 58.7 10.1 26 155-180 99-124 (443)
259 4a74_A DNA repair and recombin 95.6 0.087 3E-06 51.3 11.7 47 155-201 24-73 (231)
260 2ck3_D ATP synthase subunit be 95.5 0.089 3E-06 56.3 12.2 96 147-244 143-263 (482)
261 3lda_A DNA repair protein RAD5 95.5 0.054 1.8E-06 57.5 10.6 90 155-245 177-284 (400)
262 1qvr_A CLPB protein; coiled co 95.5 0.005 1.7E-07 73.1 2.8 45 136-180 559-612 (854)
263 1jr3_D DNA polymerase III, del 95.4 0.04 1.4E-06 57.6 9.3 152 147-321 9-183 (343)
264 2i1q_A DNA repair and recombin 95.4 0.047 1.6E-06 56.5 9.6 89 155-244 97-214 (322)
265 1pgv_A TMD-1, tropomodulin TMD 95.4 0.012 4E-07 55.5 4.3 120 498-626 35-170 (197)
266 2b8t_A Thymidine kinase; deoxy 95.3 0.0063 2.2E-07 58.9 2.5 108 155-270 11-125 (223)
267 3kb2_A SPBC2 prophage-derived 95.3 0.0088 3E-07 55.5 3.4 24 157-180 2-25 (173)
268 2px0_A Flagellar biosynthesis 95.3 0.037 1.3E-06 56.2 8.3 84 155-242 104-190 (296)
269 1qhx_A CPT, protein (chloramph 95.3 0.0093 3.2E-07 55.7 3.5 24 157-180 4-27 (178)
270 1pzn_A RAD51, DNA repair and r 95.2 0.035 1.2E-06 58.1 7.9 89 155-245 130-242 (349)
271 3rfe_A Platelet glycoprotein I 95.2 0.029 9.9E-07 49.2 6.2 53 508-563 12-67 (130)
272 3cf2_A TER ATPase, transitiona 95.2 0.011 3.8E-07 68.2 4.2 92 135-245 477-581 (806)
273 3ice_A Transcription terminati 95.2 0.015 5.2E-07 60.2 4.8 96 147-245 164-272 (422)
274 3lw7_A Adenylate kinase relate 95.2 0.0096 3.3E-07 55.4 3.1 23 157-180 2-24 (179)
275 1zp6_A Hypothetical protein AT 95.1 0.011 3.8E-07 55.9 3.5 26 155-180 8-33 (191)
276 1vma_A Cell division protein F 95.1 0.047 1.6E-06 55.7 8.3 86 155-244 103-196 (306)
277 1fx0_B ATP synthase beta chain 95.1 0.087 3E-06 56.6 10.5 96 147-244 155-276 (498)
278 1sky_E F1-ATPase, F1-ATP synth 95.1 0.097 3.3E-06 56.1 10.9 86 157-244 152-255 (473)
279 3vaa_A Shikimate kinase, SK; s 95.1 0.012 4.2E-07 56.1 3.7 26 155-180 24-49 (199)
280 1kgd_A CASK, peripheral plasma 95.1 0.012 4.1E-07 55.2 3.4 24 157-180 6-29 (180)
281 2r44_A Uncharacterized protein 95.0 0.011 3.8E-07 61.6 3.5 44 135-180 27-70 (331)
282 1ly1_A Polynucleotide kinase; 95.0 0.014 4.7E-07 54.6 3.7 22 157-178 3-24 (181)
283 2hf9_A Probable hydrogenase ni 95.0 0.02 7E-07 55.7 5.0 40 141-180 23-62 (226)
284 3hws_A ATP-dependent CLP prote 95.0 0.02 6.7E-07 60.6 5.2 45 136-180 16-75 (363)
285 1kag_A SKI, shikimate kinase I 95.0 0.011 3.7E-07 55.0 2.8 24 157-180 5-28 (173)
286 2ga8_A Hypothetical 39.9 kDa p 95.0 0.024 8.2E-07 58.4 5.6 43 138-180 2-48 (359)
287 3trf_A Shikimate kinase, SK; a 94.9 0.014 4.8E-07 54.9 3.5 25 156-180 5-29 (185)
288 3nbx_X ATPase RAVA; AAA+ ATPas 94.9 0.019 6.4E-07 63.0 4.8 44 135-180 22-65 (500)
289 3uie_A Adenylyl-sulfate kinase 94.8 0.018 6.1E-07 55.0 4.0 28 153-180 22-49 (200)
290 1odf_A YGR205W, hypothetical 3 94.8 0.024 8.3E-07 57.4 5.1 27 154-180 29-55 (290)
291 3kl4_A SRP54, signal recogniti 94.8 0.12 4.3E-06 55.1 10.8 87 155-244 96-189 (433)
292 1um8_A ATP-dependent CLP prote 94.8 0.024 8.4E-07 60.2 5.4 46 135-180 21-96 (376)
293 2ffh_A Protein (FFH); SRP54, s 94.8 0.09 3.1E-06 56.1 9.6 85 155-243 97-189 (425)
294 4eun_A Thermoresistant glucoki 94.7 0.018 6.1E-07 55.0 3.6 27 154-180 27-53 (200)
295 3t61_A Gluconokinase; PSI-biol 94.7 0.014 4.8E-07 55.8 2.9 25 156-180 18-42 (202)
296 2wsm_A Hydrogenase expression/ 94.7 0.021 7.1E-07 55.4 4.1 42 139-180 13-54 (221)
297 2yvu_A Probable adenylyl-sulfa 94.7 0.021 7.2E-07 53.7 4.0 26 155-180 12-37 (186)
298 1nks_A Adenylate kinase; therm 94.6 0.018 6.1E-07 54.5 3.5 24 157-180 2-25 (194)
299 3tr0_A Guanylate kinase, GMP k 94.6 0.017 5.9E-07 55.3 3.4 25 156-180 7-31 (205)
300 1knq_A Gluconate kinase; ALFA/ 94.6 0.019 6.6E-07 53.3 3.6 25 156-180 8-32 (175)
301 1ye8_A Protein THEP1, hypothet 94.6 0.019 6.4E-07 53.6 3.4 23 158-180 2-24 (178)
302 2bdt_A BH3686; alpha-beta prot 94.6 0.02 6.9E-07 54.0 3.6 23 157-179 3-25 (189)
303 2rhm_A Putative kinase; P-loop 94.6 0.022 7.4E-07 53.9 3.9 25 156-180 5-29 (193)
304 2ze6_A Isopentenyl transferase 94.5 0.02 6.8E-07 57.0 3.7 24 157-180 2-25 (253)
305 1g8p_A Magnesium-chelatase 38 94.5 0.013 4.6E-07 61.5 2.6 46 135-180 24-69 (350)
306 3iij_A Coilin-interacting nucl 94.5 0.018 6.1E-07 53.9 3.1 25 156-180 11-35 (180)
307 3tau_A Guanylate kinase, GMP k 94.5 0.022 7.4E-07 54.8 3.8 26 155-180 7-32 (208)
308 3a00_A Guanylate kinase, GMP k 94.5 0.016 5.5E-07 54.6 2.8 24 157-180 2-25 (186)
309 4gp7_A Metallophosphoesterase; 94.5 0.018 6.2E-07 53.4 3.0 23 155-177 8-30 (171)
310 1kht_A Adenylate kinase; phosp 94.5 0.019 6.6E-07 54.2 3.3 24 157-180 4-27 (192)
311 3bh0_A DNAB-like replicative h 94.5 0.12 4.2E-06 53.0 9.6 52 155-211 67-118 (315)
312 2bbw_A Adenylate kinase 4, AK4 94.4 0.021 7.1E-07 56.6 3.6 26 155-180 26-51 (246)
313 3asz_A Uridine kinase; cytidin 94.4 0.024 8.1E-07 54.6 3.9 26 155-180 5-30 (211)
314 1zuh_A Shikimate kinase; alpha 94.4 0.022 7.5E-07 52.5 3.5 26 155-180 6-31 (168)
315 1via_A Shikimate kinase; struc 94.4 0.018 6.2E-07 53.6 2.9 24 157-180 5-28 (175)
316 3e70_C DPA, signal recognition 94.4 0.15 5.2E-06 52.5 10.0 57 154-213 127-184 (328)
317 3umf_A Adenylate kinase; rossm 94.4 0.024 8.3E-07 54.5 3.8 27 154-180 27-53 (217)
318 2qor_A Guanylate kinase; phosp 94.4 0.02 6.7E-07 54.9 3.1 26 155-180 11-36 (204)
319 1uf9_A TT1252 protein; P-loop, 94.4 0.026 8.9E-07 53.8 4.0 26 154-179 6-31 (203)
320 1y63_A LMAJ004144AAA protein; 94.4 0.024 8.2E-07 53.3 3.6 25 155-179 9-33 (184)
321 2xxa_A Signal recognition part 94.4 0.19 6.4E-06 54.0 11.0 87 155-243 99-192 (433)
322 1ukz_A Uridylate kinase; trans 94.4 0.027 9.1E-07 53.9 4.0 27 154-180 13-39 (203)
323 1j8m_F SRP54, signal recogniti 94.3 0.16 5.6E-06 51.5 10.0 85 156-243 98-189 (297)
324 1tev_A UMP-CMP kinase; ploop, 94.3 0.025 8.6E-07 53.5 3.8 25 156-180 3-27 (196)
325 2if2_A Dephospho-COA kinase; a 94.3 0.023 7.9E-07 54.4 3.4 22 157-178 2-23 (204)
326 2c95_A Adenylate kinase 1; tra 94.3 0.025 8.5E-07 53.6 3.6 26 155-180 8-33 (196)
327 2qt1_A Nicotinamide riboside k 94.3 0.027 9.3E-07 54.0 3.9 26 155-180 20-45 (207)
328 2j41_A Guanylate kinase; GMP, 94.3 0.023 8E-07 54.4 3.4 25 156-180 6-30 (207)
329 2jaq_A Deoxyguanosine kinase; 94.3 0.024 8.2E-07 54.1 3.5 23 158-180 2-24 (205)
330 1cke_A CK, MSSA, protein (cyti 94.3 0.024 8.1E-07 55.3 3.5 24 157-180 6-29 (227)
331 1lvg_A Guanylate kinase, GMP k 94.2 0.02 6.9E-07 54.5 2.8 24 157-180 5-28 (198)
332 3tqc_A Pantothenate kinase; bi 94.2 0.041 1.4E-06 56.4 5.2 96 138-234 70-171 (321)
333 1ex7_A Guanylate kinase; subst 94.2 0.022 7.5E-07 53.3 2.9 24 157-180 2-25 (186)
334 2iyv_A Shikimate kinase, SK; t 94.2 0.02 6.9E-07 53.7 2.7 24 157-180 3-26 (184)
335 3ney_A 55 kDa erythrocyte memb 94.2 0.027 9.3E-07 53.1 3.5 26 155-180 18-43 (197)
336 1jjv_A Dephospho-COA kinase; P 94.2 0.026 9E-07 54.0 3.5 22 157-178 3-24 (206)
337 1g41_A Heat shock protein HSLU 94.1 0.03 1E-06 59.9 4.1 46 135-180 15-74 (444)
338 1gvn_B Zeta; postsegregational 94.1 0.045 1.5E-06 55.5 5.3 26 155-180 32-57 (287)
339 3cm0_A Adenylate kinase; ATP-b 94.1 0.03 1E-06 52.6 3.7 24 157-180 5-28 (186)
340 2bwj_A Adenylate kinase 5; pho 94.1 0.029 9.8E-07 53.4 3.5 25 156-180 12-36 (199)
341 3fwy_A Light-independent proto 94.0 0.03 1E-06 57.4 3.8 41 154-197 46-86 (314)
342 3a4m_A L-seryl-tRNA(SEC) kinas 94.0 0.032 1.1E-06 55.7 3.9 25 156-180 4-28 (260)
343 1htw_A HI0065; nucleotide-bind 94.0 0.033 1.1E-06 50.7 3.6 27 154-180 31-57 (158)
344 3l0o_A Transcription terminati 94.0 0.26 9E-06 51.0 10.6 35 146-180 164-199 (427)
345 1e6c_A Shikimate kinase; phosp 94.0 0.025 8.6E-07 52.4 2.9 24 157-180 3-26 (173)
346 1znw_A Guanylate kinase, GMP k 93.9 0.03 1E-06 53.7 3.4 26 155-180 19-44 (207)
347 1qf9_A UMP/CMP kinase, protein 93.9 0.033 1.1E-06 52.6 3.7 25 156-180 6-30 (194)
348 3aez_A Pantothenate kinase; tr 93.9 0.035 1.2E-06 56.9 4.0 27 154-180 88-114 (312)
349 2vli_A Antibiotic resistance p 93.9 0.022 7.5E-07 53.4 2.3 25 156-180 5-29 (183)
350 1tue_A Replication protein E1; 93.9 0.04 1.4E-06 51.9 4.0 37 144-180 45-82 (212)
351 2plr_A DTMP kinase, probable t 93.9 0.036 1.2E-06 53.3 3.9 25 156-180 4-28 (213)
352 1xjc_A MOBB protein homolog; s 93.9 0.035 1.2E-06 50.9 3.5 26 155-180 3-28 (169)
353 3vr4_D V-type sodium ATPase su 93.9 0.13 4.5E-06 54.6 8.3 87 157-244 152-258 (465)
354 3tlx_A Adenylate kinase 2; str 93.8 0.052 1.8E-06 53.5 5.0 27 154-180 27-53 (243)
355 2grj_A Dephospho-COA kinase; T 93.8 0.037 1.3E-06 52.2 3.7 27 154-180 10-36 (192)
356 2pt5_A Shikimate kinase, SK; a 93.8 0.035 1.2E-06 51.1 3.5 23 158-180 2-24 (168)
357 2cdn_A Adenylate kinase; phosp 93.8 0.034 1.2E-06 53.0 3.5 26 155-180 19-44 (201)
358 2jeo_A Uridine-cytidine kinase 93.8 0.039 1.3E-06 54.5 4.0 27 154-180 23-49 (245)
359 1ls1_A Signal recognition part 93.8 0.16 5.6E-06 51.5 8.7 86 155-243 97-189 (295)
360 1z6g_A Guanylate kinase; struc 93.8 0.028 9.6E-07 54.4 2.9 26 155-180 22-47 (218)
361 4e22_A Cytidylate kinase; P-lo 93.7 0.035 1.2E-06 55.1 3.5 26 155-180 26-51 (252)
362 1zd8_A GTP:AMP phosphotransfer 93.7 0.036 1.2E-06 54.0 3.6 25 156-180 7-31 (227)
363 1uj2_A Uridine-cytidine kinase 93.7 0.04 1.4E-06 54.8 3.9 27 154-180 20-46 (252)
364 2pbr_A DTMP kinase, thymidylat 93.6 0.038 1.3E-06 52.3 3.5 23 158-180 2-24 (195)
365 2j37_W Signal recognition part 93.6 0.33 1.1E-05 52.9 11.3 26 155-180 100-125 (504)
366 3oaa_A ATP synthase subunit al 93.6 0.16 5.4E-06 54.5 8.3 91 147-244 152-264 (513)
367 2p5t_B PEZT; postsegregational 93.6 0.05 1.7E-06 54.1 4.3 26 155-180 31-56 (253)
368 1s96_A Guanylate kinase, GMP k 93.5 0.039 1.3E-06 53.3 3.4 26 155-180 15-40 (219)
369 2wwf_A Thymidilate kinase, put 93.5 0.042 1.4E-06 52.8 3.7 25 156-180 10-34 (212)
370 1aky_A Adenylate kinase; ATP:A 93.5 0.043 1.5E-06 53.2 3.6 25 156-180 4-28 (220)
371 1nn5_A Similar to deoxythymidy 93.5 0.044 1.5E-06 52.8 3.7 25 156-180 9-33 (215)
372 3fb4_A Adenylate kinase; psych 93.4 0.04 1.4E-06 53.2 3.4 23 158-180 2-24 (216)
373 3dl0_A Adenylate kinase; phosp 93.4 0.043 1.5E-06 53.0 3.5 23 158-180 2-24 (216)
374 1rj9_A FTSY, signal recognitio 93.4 0.045 1.6E-06 55.8 3.8 26 155-180 101-126 (304)
375 3cmu_A Protein RECA, recombina 93.4 0.13 4.4E-06 65.0 8.3 82 155-244 1426-1515(2050)
376 1zak_A Adenylate kinase; ATP:A 93.4 0.039 1.3E-06 53.6 3.1 26 155-180 4-29 (222)
377 2z0h_A DTMP kinase, thymidylat 93.3 0.046 1.6E-06 51.8 3.5 23 158-180 2-24 (197)
378 2i3b_A HCR-ntpase, human cance 93.3 0.038 1.3E-06 52.0 2.8 24 157-180 2-25 (189)
379 3hjn_A DTMP kinase, thymidylat 93.3 0.16 5.5E-06 48.0 7.2 23 158-180 2-24 (197)
380 2v54_A DTMP kinase, thymidylat 93.2 0.052 1.8E-06 51.8 3.7 25 156-180 4-28 (204)
381 2pez_A Bifunctional 3'-phospho 93.2 0.053 1.8E-06 50.5 3.6 25 156-180 5-29 (179)
382 3k1j_A LON protease, ATP-depen 93.1 0.12 4E-06 58.6 7.0 43 136-180 42-84 (604)
383 1gtv_A TMK, thymidylate kinase 93.1 0.026 8.7E-07 54.5 1.3 24 157-180 1-24 (214)
384 2onk_A Molybdate/tungstate ABC 93.1 0.052 1.8E-06 53.3 3.5 26 154-180 23-48 (240)
385 2f6r_A COA synthase, bifunctio 93.1 0.055 1.9E-06 54.7 3.8 25 154-178 73-97 (281)
386 2qe7_A ATP synthase subunit al 93.1 0.11 3.8E-06 55.9 6.2 93 147-244 152-264 (502)
387 2r9v_A ATP synthase subunit al 93.0 0.099 3.4E-06 56.2 5.8 93 147-244 165-277 (515)
388 3sr0_A Adenylate kinase; phosp 93.0 0.053 1.8E-06 51.8 3.4 23 158-180 2-24 (206)
389 1vht_A Dephospho-COA kinase; s 93.0 0.059 2E-06 52.1 3.8 23 156-178 4-26 (218)
390 2f1r_A Molybdopterin-guanine d 93.0 0.03 1E-06 51.7 1.6 25 156-180 2-26 (171)
391 1sq5_A Pantothenate kinase; P- 93.0 0.097 3.3E-06 53.6 5.6 27 154-180 78-104 (308)
392 2ehv_A Hypothetical protein PH 93.0 0.05 1.7E-06 53.8 3.3 24 155-178 29-52 (251)
393 3d3q_A TRNA delta(2)-isopenten 93.0 0.057 1.9E-06 55.5 3.7 24 157-180 8-31 (340)
394 1m7g_A Adenylylsulfate kinase; 93.0 0.056 1.9E-06 51.9 3.6 27 154-180 23-49 (211)
395 3r20_A Cytidylate kinase; stru 93.0 0.054 1.8E-06 52.7 3.4 25 156-180 9-33 (233)
396 3nwj_A ATSK2; P loop, shikimat 92.9 0.045 1.5E-06 54.0 2.8 25 156-180 48-72 (250)
397 3tif_A Uncharacterized ABC tra 92.9 0.048 1.7E-06 53.4 3.0 35 155-193 30-64 (235)
398 2pcj_A ABC transporter, lipopr 92.9 0.049 1.7E-06 52.9 3.0 26 155-180 29-54 (224)
399 3lnc_A Guanylate kinase, GMP k 92.9 0.036 1.2E-06 54.2 2.0 25 156-180 27-52 (231)
400 3b9q_A Chloroplast SRP recepto 92.9 0.063 2.2E-06 54.7 3.9 26 155-180 99-124 (302)
401 1np6_A Molybdopterin-guanine d 92.8 0.065 2.2E-06 49.6 3.5 25 156-180 6-30 (174)
402 1pgv_A TMD-1, tropomodulin TMD 92.7 0.075 2.6E-06 50.0 3.9 89 524-622 37-135 (197)
403 3exa_A TRNA delta(2)-isopenten 92.7 0.071 2.4E-06 53.8 3.9 25 156-180 3-27 (322)
404 3ake_A Cytidylate kinase; CMP 92.7 0.062 2.1E-06 51.4 3.5 23 158-180 4-26 (208)
405 3b85_A Phosphate starvation-in 92.7 0.047 1.6E-06 52.2 2.5 24 156-179 22-45 (208)
406 4a1f_A DNAB helicase, replicat 92.7 0.24 8.2E-06 51.0 7.9 53 155-212 45-97 (338)
407 3p32_A Probable GTPase RV1496/ 92.6 0.12 4.2E-06 54.1 5.9 37 144-180 65-103 (355)
408 3crm_A TRNA delta(2)-isopenten 92.6 0.067 2.3E-06 54.6 3.7 24 157-180 6-29 (323)
409 3a8t_A Adenylate isopentenyltr 92.6 0.072 2.5E-06 54.5 3.8 26 155-180 39-64 (339)
410 3be4_A Adenylate kinase; malar 92.6 0.064 2.2E-06 51.8 3.3 24 157-180 6-29 (217)
411 3gfo_A Cobalt import ATP-bindi 92.5 0.059 2E-06 54.0 3.0 26 155-180 33-58 (275)
412 2cbz_A Multidrug resistance-as 92.5 0.059 2E-06 52.8 3.0 26 155-180 30-55 (237)
413 1e4v_A Adenylate kinase; trans 92.5 0.067 2.3E-06 51.6 3.4 23 158-180 2-24 (214)
414 1b0u_A Histidine permease; ABC 92.4 0.06 2.1E-06 53.6 3.0 35 155-193 31-65 (262)
415 2xb4_A Adenylate kinase; ATP-b 92.4 0.071 2.4E-06 51.8 3.5 23 158-180 2-24 (223)
416 1ak2_A Adenylate kinase isoenz 92.4 0.077 2.6E-06 51.9 3.7 25 156-180 16-40 (233)
417 1fx0_A ATP synthase alpha chai 92.4 0.1 3.5E-06 56.1 4.8 82 156-244 163-265 (507)
418 2yhs_A FTSY, cell division pro 92.3 0.13 4.3E-06 55.6 5.5 26 155-180 292-317 (503)
419 1ji0_A ABC transporter; ATP bi 92.3 0.066 2.2E-06 52.6 3.0 35 155-193 31-65 (240)
420 2d2e_A SUFC protein; ABC-ATPas 92.3 0.073 2.5E-06 52.7 3.4 25 155-179 28-52 (250)
421 1sgw_A Putative ABC transporte 92.3 0.056 1.9E-06 51.9 2.4 26 155-180 34-59 (214)
422 4eaq_A DTMP kinase, thymidylat 92.3 0.15 5.2E-06 49.6 5.6 26 155-180 25-50 (229)
423 4g1u_C Hemin import ATP-bindin 92.3 0.065 2.2E-06 53.5 3.0 26 155-180 36-61 (266)
424 3end_A Light-independent proto 92.3 0.11 3.8E-06 53.3 4.8 42 153-197 38-79 (307)
425 1g6h_A High-affinity branched- 92.2 0.067 2.3E-06 53.2 3.0 26 155-180 32-57 (257)
426 2pze_A Cystic fibrosis transme 92.2 0.067 2.3E-06 52.1 3.0 26 155-180 33-58 (229)
427 2olj_A Amino acid ABC transpor 92.2 0.067 2.3E-06 53.2 3.0 26 155-180 49-74 (263)
428 1oix_A RAS-related protein RAB 92.2 0.08 2.7E-06 49.9 3.4 26 155-180 28-53 (191)
429 2og2_A Putative signal recogni 92.2 0.086 3E-06 54.9 3.9 26 155-180 156-181 (359)
430 1mv5_A LMRA, multidrug resista 92.2 0.074 2.5E-06 52.4 3.2 26 155-180 27-52 (243)
431 2zu0_C Probable ATP-dependent 92.1 0.076 2.6E-06 53.1 3.3 25 155-179 45-69 (267)
432 3foz_A TRNA delta(2)-isopenten 92.1 0.09 3.1E-06 53.0 3.8 26 155-180 9-34 (316)
433 2ff7_A Alpha-hemolysin translo 92.1 0.072 2.5E-06 52.6 3.0 35 155-193 34-68 (247)
434 4akg_A Glutathione S-transfera 92.0 0.48 1.6E-05 62.1 11.2 78 157-244 1268-1346(2695)
435 1vpl_A ABC transporter, ATP-bi 92.0 0.073 2.5E-06 52.8 3.0 26 155-180 40-65 (256)
436 3gqb_B V-type ATP synthase bet 92.0 0.22 7.6E-06 52.9 6.7 88 156-244 147-261 (464)
437 2qi9_C Vitamin B12 import ATP- 91.9 0.078 2.7E-06 52.3 3.0 26 155-180 25-50 (249)
438 2eyu_A Twitching motility prot 91.9 0.096 3.3E-06 52.1 3.7 27 154-180 23-49 (261)
439 2ghi_A Transport protein; mult 91.8 0.079 2.7E-06 52.7 3.0 34 155-193 45-78 (260)
440 3f9v_A Minichromosome maintena 91.8 0.056 1.9E-06 60.9 2.1 46 135-180 295-351 (595)
441 2dr3_A UPF0273 protein PH0284; 91.8 0.1 3.5E-06 51.4 3.9 40 155-197 22-61 (247)
442 2ixe_A Antigen peptide transpo 91.8 0.08 2.7E-06 53.0 3.0 26 155-180 44-69 (271)
443 2v9p_A Replication protein E1; 91.8 0.09 3.1E-06 53.4 3.4 27 154-180 124-150 (305)
444 2ihy_A ABC transporter, ATP-bi 91.7 0.082 2.8E-06 53.1 3.0 26 155-180 46-71 (279)
445 2yz2_A Putative ABC transporte 91.7 0.083 2.8E-06 52.8 3.0 26 155-180 32-57 (266)
446 2dyk_A GTP-binding protein; GT 91.7 0.11 3.8E-06 47.0 3.7 24 157-180 2-25 (161)
447 2nq2_C Hypothetical ABC transp 91.7 0.083 2.8E-06 52.3 3.0 26 155-180 30-55 (253)
448 2c61_A A-type ATP synthase non 91.6 0.3 1E-05 52.2 7.4 97 148-244 143-259 (469)
449 1a7j_A Phosphoribulokinase; tr 91.6 0.052 1.8E-06 55.1 1.5 26 155-180 4-29 (290)
450 2wji_A Ferrous iron transport 91.6 0.1 3.5E-06 47.7 3.4 23 157-179 4-26 (165)
451 1ltq_A Polynucleotide kinase; 91.6 0.1 3.4E-06 53.4 3.6 23 157-179 3-25 (301)
452 2ck3_A ATP synthase subunit al 91.6 0.17 5.8E-06 54.5 5.4 97 147-244 152-272 (510)
453 3vr4_A V-type sodium ATPase ca 91.6 0.54 1.8E-05 51.2 9.3 57 147-208 222-280 (600)
454 1yrb_A ATP(GTP)binding protein 91.6 0.11 3.7E-06 51.8 3.8 26 155-180 13-38 (262)
455 2f9l_A RAB11B, member RAS onco 91.6 0.1 3.5E-06 49.4 3.5 25 156-180 5-29 (199)
456 1zu4_A FTSY; GTPase, signal re 91.5 0.12 4E-06 53.2 3.9 27 154-180 103-129 (320)
457 3zvl_A Bifunctional polynucleo 91.5 0.1 3.5E-06 56.0 3.7 27 154-180 256-282 (416)
458 3iqw_A Tail-anchored protein t 91.5 0.25 8.7E-06 50.9 6.5 50 151-203 11-60 (334)
459 3io3_A DEHA2D07832P; chaperone 91.4 0.22 7.5E-06 51.7 6.0 51 151-202 13-63 (348)
460 2zej_A Dardarin, leucine-rich 91.4 0.085 2.9E-06 49.3 2.6 22 158-179 4-25 (184)
461 1q57_A DNA primase/helicase; d 91.4 0.57 2E-05 51.6 9.7 53 155-211 241-293 (503)
462 3sop_A Neuronal-specific septi 91.3 0.11 3.7E-06 52.0 3.4 23 158-180 4-26 (270)
463 1r6b_X CLPA protein; AAA+, N-t 91.3 0.19 6.6E-06 58.7 6.0 46 135-180 458-512 (758)
464 2qmh_A HPR kinase/phosphorylas 91.2 0.12 4E-06 48.4 3.3 25 156-180 34-58 (205)
465 1q3t_A Cytidylate kinase; nucl 91.2 0.13 4.4E-06 50.4 3.8 26 155-180 15-40 (236)
466 1nlf_A Regulatory protein REPA 91.2 0.1 3.6E-06 52.6 3.2 26 155-180 29-54 (279)
467 3cmu_A Protein RECA, recombina 91.2 0.35 1.2E-05 61.1 8.3 83 155-245 382-472 (2050)
468 1svm_A Large T antigen; AAA+ f 91.1 0.13 4.3E-06 54.1 3.8 27 154-180 167-193 (377)
469 1cr0_A DNA primase/helicase; R 91.1 0.11 3.8E-06 52.9 3.3 26 155-180 34-59 (296)
470 2ged_A SR-beta, signal recogni 91.1 0.22 7.5E-06 46.7 5.2 26 155-180 47-72 (193)
471 4gzl_A RAS-related C3 botulinu 91.0 0.13 4.6E-06 48.9 3.7 42 139-180 13-54 (204)
472 2pjz_A Hypothetical protein ST 91.0 0.11 3.7E-06 51.7 3.0 24 156-179 30-53 (263)
473 3cmw_A Protein RECA, recombina 90.9 0.32 1.1E-05 60.7 7.6 79 157-243 384-470 (1706)
474 1tq4_A IIGP1, interferon-induc 90.9 0.16 5.4E-06 54.0 4.3 26 154-179 67-92 (413)
475 2wjg_A FEOB, ferrous iron tran 90.9 0.14 4.9E-06 47.7 3.7 24 156-179 7-30 (188)
476 2ocp_A DGK, deoxyguanosine kin 90.9 0.15 5.1E-06 50.1 3.9 25 156-180 2-26 (241)
477 2ce2_X GTPase HRAS; signaling 90.8 0.13 4.3E-06 46.7 3.2 23 158-180 5-27 (166)
478 2vp4_A Deoxynucleoside kinase; 90.8 0.096 3.3E-06 51.1 2.4 25 155-179 19-43 (230)
479 3lv8_A DTMP kinase, thymidylat 90.8 0.28 9.6E-06 47.7 5.7 37 156-194 27-63 (236)
480 2q6t_A DNAB replication FORK h 90.7 0.72 2.5E-05 49.8 9.5 53 155-211 199-251 (444)
481 3mfy_A V-type ATP synthase alp 90.7 0.39 1.3E-05 52.1 7.0 57 147-208 217-275 (588)
482 4edh_A DTMP kinase, thymidylat 90.7 0.38 1.3E-05 46.1 6.5 25 156-180 6-30 (213)
483 3eph_A TRNA isopentenyltransfe 90.7 0.14 4.8E-06 53.7 3.6 25 156-180 2-26 (409)
484 1z2a_A RAS-related protein RAB 90.6 0.14 4.7E-06 46.7 3.2 25 156-180 5-29 (168)
485 2bbs_A Cystic fibrosis transme 90.6 0.12 4.2E-06 52.2 3.0 26 155-180 63-88 (290)
486 3fvq_A Fe(3+) IONS import ATP- 90.6 0.13 4.6E-06 53.3 3.3 26 155-180 29-54 (359)
487 2r6a_A DNAB helicase, replicat 90.5 1.7 5.7E-05 47.1 12.2 51 155-209 202-252 (454)
488 3v9p_A DTMP kinase, thymidylat 90.5 0.22 7.4E-06 48.2 4.5 25 156-180 25-49 (227)
489 1g8f_A Sulfate adenylyltransfe 90.5 0.21 7.2E-06 54.5 4.9 43 138-180 375-419 (511)
490 3tui_C Methionine import ATP-b 90.5 0.14 4.8E-06 53.3 3.3 26 155-180 53-78 (366)
491 3kta_A Chromosome segregation 90.3 0.15 5.3E-06 47.4 3.3 24 157-180 27-50 (182)
492 2gj8_A MNME, tRNA modification 90.3 0.14 4.9E-06 47.1 3.1 24 157-180 5-28 (172)
493 3nh6_A ATP-binding cassette SU 90.3 0.093 3.2E-06 53.4 1.9 26 155-180 79-104 (306)
494 3con_A GTPase NRAS; structural 90.3 0.15 5.1E-06 47.8 3.2 24 157-180 22-45 (190)
495 1zj6_A ADP-ribosylation factor 90.3 0.26 9E-06 45.9 4.9 34 145-179 6-39 (187)
496 1fzq_A ADP-ribosylation factor 90.3 0.18 6.3E-06 46.8 3.8 26 154-179 14-39 (181)
497 4tmk_A Protein (thymidylate ki 90.3 0.36 1.2E-05 46.2 5.9 52 157-210 4-55 (213)
498 2nzj_A GTP-binding protein REM 90.2 0.14 4.8E-06 47.1 2.9 25 156-180 4-28 (175)
499 1u0j_A DNA replication protein 90.2 0.29 1E-05 48.2 5.3 36 145-180 91-128 (267)
500 1cp2_A CP2, nitrogenase iron p 90.2 0.29 9.8E-06 48.9 5.4 38 157-197 2-39 (269)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.3e-47 Score=432.32 Aligned_cols=293 Identities=15% Similarity=0.110 Sum_probs=238.0
Q ss_pred ccchHHHHHHHHHhcCC---CceEEEEEccCCCCHHHHHHHHHh--hcCCCCCCCCeEEEEEeCCcc--cHHHHHHHHHH
Q 037138 138 VGLNSTLEKVWRCLGEE---RVGIIGLYGMGGVGKTTLLAQINN--KFLDTPNDFDVVIWVVVSKDM--QLERIQEKIGE 210 (806)
Q Consensus 138 ~gr~~~~~~l~~~l~~~---~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~ 210 (806)
|||+.++++|.++|..+ .+++|+|+||||+||||||+++|+ +. ++..+|+.++||++++.+ ++..++..|+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 59999999999999643 689999999999999999999998 44 568999999999999985 89999999999
Q ss_pred HhCCCC---------CCCHHHHHHHHHHHhCCC-cEEEEEecCCCccCcccccccCCCCCCcEEEEecCC----------
Q 037138 211 RIGLLE---------NRSLEERASGIFKILSKK-KFLLLLDDVWERIDLTKVGIPFPSKNTSKVVFTTRL---------- 270 (806)
Q Consensus 211 ~l~~~~---------~~~~~~~~~~l~~~l~~k-~~LlvlDdv~~~~~~~~~~~~~~~~~~s~iivTtr~---------- 270 (806)
+++... ..+.......+++.|+++ |+||||||||+..++ .+ +..+||+||||||+
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~~~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----AQELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----HHHTTCEEEEEESBGGGGGGCCSC
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----cccCCCEEEEEcCCHHHHHHcCCC
Confidence 998642 234566788999999996 999999999997644 11 11369999999998
Q ss_pred --ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhh-hcCCCCHHHHHHHHHHHhhcccCC
Q 037138 271 --IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITTG-LGCKKSQEEWSYAIEILRRSASEL 347 (806)
Q Consensus 271 --~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g-~~~~~~~~~w~~~l~~l~~~~~~~ 347 (806)
.|++++|+.+|||+||.+.++... .++.+++++++|+++|+|+||||+++| ....+ .|..+ +.+.+..+..
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~---~w~~~-~~l~~~l~~~ 358 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK---TFEKM-AQLNNKLESR 358 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS---SHHHH-HHHHHHHHHH
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc---hHHHH-HHhHHHhhcc
Confidence 489999999999999999987653 246788899999999999999999999 33333 35544 4554443321
Q ss_pred CCCccchhhhhhhchhcCChhhHHHHHh-----------hhcCCCCCCcccHHHHHHHHHHc--CCccCCC-chhHHHhH
Q 037138 348 PGMGKEVYPLLKFSYDSLSSEIFRSCLL-----------YCSLFPEDCKIDKIELIECWIGE--GFLNGYE-GAEVHNQG 413 (806)
Q Consensus 348 ~~~~~~~~~~l~~sy~~L~~~~~k~cfl-----------~~~~fp~~~~i~~~~li~~Wia~--g~i~~~~-~~~~~~~~ 413 (806)
. ..++.+++.+||++||+ ++|.||+ |||+||+++.|+ +++|+|+ ||+...+ ....++.+
T Consensus 359 ~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~ 431 (549)
T 2a5y_B 359 G--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA 431 (549)
T ss_dssp C--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH
T ss_pred c--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHH
Confidence 1 24799999999999998 8999999 999999999999 8999999 9998765 55566677
Q ss_pred HHHHHHHHHcccceee---CCCcEEehHHHHHHHHHHHhh
Q 037138 414 YYIIGILVHACLLEEV---GSDHVRMHDAIRDMTLWIACE 450 (806)
Q Consensus 414 ~~~~~~L~~~sll~~~---~~~~~~mHdlv~d~a~~~~~~ 450 (806)
+ ++++|+++||++.. ...+|+|||++|++|++++.+
T Consensus 432 ~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~ 470 (549)
T 2a5y_B 432 D-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDA 470 (549)
T ss_dssp H-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCT
T ss_pred H-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHH
Confidence 7 99999999999986 345799999999999987754
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=3.2e-38 Score=360.28 Aligned_cols=269 Identities=16% Similarity=0.199 Sum_probs=218.7
Q ss_pred CccccchHHHHHHHHHhcC-CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCe-EEEEEeCCcccHHHHHHHHHHHh
Q 037138 135 PTIVGLNSTLEKVWRCLGE-ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDV-VIWVVVSKDMQLERIQEKIGERI 212 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~i~~~l 212 (806)
+..|||+.++++|.++|.+ ++.++|+|+||||+||||||+++|++. ++..+|+. ++|+++++.++...++..|++.+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3459999999999999965 568999999999999999999999875 45778986 99999999999888888887754
Q ss_pred CCC---C----C------CCHHHHHHHHHHHh---CCCcEEEEEecCCCccCcccccccCCCCCCcEEEEecCC------
Q 037138 213 GLL---E----N------RSLEERASGIFKIL---SKKKFLLLLDDVWERIDLTKVGIPFPSKNTSKVVFTTRL------ 270 (806)
Q Consensus 213 ~~~---~----~------~~~~~~~~~l~~~l---~~k~~LlvlDdv~~~~~~~~~~~~~~~~~~s~iivTtr~------ 270 (806)
+.. . . .+.++....+++.| .++|+||||||||+...|+.+. .||+||||||+
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~------pGSRILVTTRd~~Va~~ 280 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN------LSCKILLTTRFKQVTDF 280 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH------SSCCEEEECSCSHHHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC------CCeEEEEeccChHHHHh
Confidence 321 0 1 12344556677755 7899999999999987777652 58999999998
Q ss_pred -----ceecc------cCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhh--hcCC-CCHHHHHHH
Q 037138 271 -----IFKVE------CLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITTG--LGCK-KSQEEWSYA 336 (806)
Q Consensus 271 -----~~~l~------~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g--~~~~-~~~~~w~~~ 336 (806)
.|.++ +|+.+|||+||++.++.. ..++..+| |+|+||||+++| ++.+ .+.++|...
T Consensus 281 l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~ 350 (1221)
T 1vt4_I 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV 350 (1221)
T ss_dssp HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC
T ss_pred cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC
Confidence 46777 999999999999985432 12334444 999999999999 4444 367888752
Q ss_pred HHHHhhcccCCCCCccchhhhhhhchhcCChhhH-HHHHhhhcCCCCCCcccHHHHHHHHHHcCCccCCCchhHHHhHHH
Q 037138 337 IEILRRSASELPGMGKEVYPLLKFSYDSLSSEIF-RSCLLYCSLFPEDCKIDKIELIECWIGEGFLNGYEGAEVHNQGYY 415 (806)
Q Consensus 337 l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~cfl~~~~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~~~~~~~ 415 (806)
..+.+..+|.+||+.||+ +. |.||+|||+||+++.|+++.++.+|+++| ++.+..
T Consensus 351 -------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~ 406 (1221)
T 1vt4_I 351 -------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMV 406 (1221)
T ss_dssp -------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHH
T ss_pred -------------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHH
Confidence 125899999999999999 67 99999999999999999999999999887 135778
Q ss_pred HHHHHHHcccceee-CCCcEEehHHHHHHH
Q 037138 416 IIGILVHACLLEEV-GSDHVRMHDAIRDMT 444 (806)
Q Consensus 416 ~~~~L~~~sll~~~-~~~~~~mHdlv~d~a 444 (806)
++++|+++||++.. ...+|+|||++++++
T Consensus 407 ~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 407 VVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 99999999999986 457899999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.9e-36 Score=381.63 Aligned_cols=293 Identities=23% Similarity=0.279 Sum_probs=239.3
Q ss_pred CCccccchHHHHHHHHHhc--CCCceEEEEEccCCCCHHHHHHHHHhhcCCCCC-CCCeEEEEEeCCcc--cHHHHHHHH
Q 037138 134 EPTIVGLNSTLEKVWRCLG--EERVGIIGLYGMGGVGKTTLLAQINNKFLDTPN-DFDVVIWVVVSKDM--QLERIQEKI 208 (806)
Q Consensus 134 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~F~~~~wv~~s~~~--~~~~~~~~i 208 (806)
.+.||||++++++|.+.|. ++++++|+|+||||+||||||+++|++...... +|+.++||++++.. +....+..+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 4569999999999999994 467899999999999999999999998411133 55788899999854 345557777
Q ss_pred HHHhCCCC------CCCHHHHHHHHHHHhCCC--cEEEEEecCCCccCcccccccCCCCCCcEEEEecCC----------
Q 037138 209 GERIGLLE------NRSLEERASGIFKILSKK--KFLLLLDDVWERIDLTKVGIPFPSKNTSKVVFTTRL---------- 270 (806)
Q Consensus 209 ~~~l~~~~------~~~~~~~~~~l~~~l~~k--~~LlvlDdv~~~~~~~~~~~~~~~~~~s~iivTtr~---------- 270 (806)
+..+.... ..+.++....++..+.++ |+||||||||+..+|..+ .+||+||||||+
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~------~~~~~ilvTtR~~~~~~~~~~~ 276 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF------DNQCQILLTTRDKSVTDSVMGP 276 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT------CSSCEEEEEESSTTTTTTCCSC
T ss_pred HHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh------cCCCEEEEEcCCHHHHHhhcCC
Confidence 77776532 456788889999999877 999999999988766654 568999999998
Q ss_pred --ceeccc-CChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhh--hcCCCCHHHHHHHHHHHhhccc
Q 037138 271 --IFKVEC-LRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITTG--LGCKKSQEEWSYAIEILRRSAS 345 (806)
Q Consensus 271 --~~~l~~-L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g--~~~~~~~~~w~~~l~~l~~~~~ 345 (806)
.+.+++ |+++||++||...++... +.+.+++++|+++|+|+||||+++| ++.+. ..|..+++.+....+
T Consensus 277 ~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~ 350 (1249)
T 3sfz_A 277 KHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQF 350 (1249)
T ss_dssp BCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCC
T ss_pred ceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhh
Confidence 577885 999999999998885432 3456789999999999999999999 44333 579999999877643
Q ss_pred CC-C----CCccchhhhhhhchhcCChhhHHHHHhhhcCCCCCCcccHHHHHHHHHHcCCccCCCchhHHHhHHHHHHHH
Q 037138 346 EL-P----GMGKEVYPLLKFSYDSLSSEIFRSCLLYCSLFPEDCKIDKIELIECWIGEGFLNGYEGAEVHNQGYYIIGIL 420 (806)
Q Consensus 346 ~~-~----~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~~~~~~~~~~~L 420 (806)
.. . ...+.+..++.+||+.||+ +.|.||+|||+||+++.|+++.++.+|.++ ++.++.++++|
T Consensus 351 ~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~~L 418 (1249)
T 3sfz_A 351 KRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQEF 418 (1249)
T ss_dssp CCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHHHH
T ss_pred hhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHHHH
Confidence 32 1 1124689999999999999 799999999999999999999999999654 35678899999
Q ss_pred HHcccceeeCCC---cEEehHHHHHHHHHHHhh
Q 037138 421 VHACLLEEVGSD---HVRMHDAIRDMTLWIACE 450 (806)
Q Consensus 421 ~~~sll~~~~~~---~~~mHdlv~d~a~~~~~~ 450 (806)
+++||++....+ +|+||+++|++++..+.+
T Consensus 419 ~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 419 VNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred HhccceEEecCCCceEEEecHHHHHHHHhhhhH
Confidence 999999987333 499999999999987654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=6.4e-34 Score=328.52 Aligned_cols=288 Identities=23% Similarity=0.296 Sum_probs=225.6
Q ss_pred CCccccchHHHHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHhhcCCC-CCCC-CeEEEEEeCCcccHHHHHH---
Q 037138 134 EPTIVGLNSTLEKVWRCLGE--ERVGIIGLYGMGGVGKTTLLAQINNKFLDT-PNDF-DVVIWVVVSKDMQLERIQE--- 206 (806)
Q Consensus 134 ~~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~~F-~~~~wv~~s~~~~~~~~~~--- 206 (806)
.+.||||+.++++|.+.|.. ++.++|+|+||||+||||||++++++. .. ..+| +.++|++++... ...++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~~-~~~~~~~l~ 200 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQD-KSGLLMKLQ 200 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESCC-HHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCCc-hHHHHHHHH
Confidence 35699999999999999963 568999999999999999999999875 33 4678 589999998752 233333
Q ss_pred HHHHHhCC------CCCCCHHHHHHHHHHHhCC--CcEEEEEecCCCccCcccccccCCCCCCcEEEEecCC--------
Q 037138 207 KIGERIGL------LENRSLEERASGIFKILSK--KKFLLLLDDVWERIDLTKVGIPFPSKNTSKVVFTTRL-------- 270 (806)
Q Consensus 207 ~i~~~l~~------~~~~~~~~~~~~l~~~l~~--k~~LlvlDdv~~~~~~~~~~~~~~~~~~s~iivTtr~-------- 270 (806)
.++..++. ....+.+.....++..+.+ +++||||||||+...+..+ ..|++||||||+
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l------~~~~~ilvTsR~~~~~~~~~ 274 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF------DSQCQILLTTRDKSVTDSVM 274 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT------CSSCEEEEEESCGGGGTTCC
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh------cCCCeEEEECCCcHHHHhcC
Confidence 34445542 1145677778888888865 7999999999986555432 468999999998
Q ss_pred --ceec---ccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhh--hcCCCCHHHHHHHHHHHhhc
Q 037138 271 --IFKV---ECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITTG--LGCKKSQEEWSYAIEILRRS 343 (806)
Q Consensus 271 --~~~l---~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g--~~~~~~~~~w~~~l~~l~~~ 343 (806)
.+.+ ++|+.+||++||...++... ....+.+.+|+++|+|+|+||+.+| ++.. ..+|..+++.+...
T Consensus 275 ~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l~~~ 348 (591)
T 1z6t_A 275 GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQLQNK 348 (591)
T ss_dssp SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHHHSC
T ss_pred CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHHHHh
Confidence 3444 58999999999999886532 1224578999999999999999999 4333 34799998888765
Q ss_pred ccC-C----CCCccchhhhhhhchhcCChhhHHHHHhhhcCCCCCCcccHHHHHHHHHHcCCccCCCchhHHHhHHHHHH
Q 037138 344 ASE-L----PGMGKEVYPLLKFSYDSLSSEIFRSCLLYCSLFPEDCKIDKIELIECWIGEGFLNGYEGAEVHNQGYYIIG 418 (806)
Q Consensus 344 ~~~-~----~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~Wia~g~i~~~~~~~~~~~~~~~~~ 418 (806)
... + ......+..++..||+.||+ +.|.||++||+||+++.|+.+.++..|.++ .+.+..++.
T Consensus 349 ~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~l~ 416 (591)
T 1z6t_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDILQ 416 (591)
T ss_dssp CCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHHHH
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHHHHH
Confidence 322 1 11224789999999999999 789999999999999999999999999643 235677899
Q ss_pred HHHHcccceeeC---CCcEEehHHHHHHHHHH
Q 037138 419 ILVHACLLEEVG---SDHVRMHDAIRDMTLWI 447 (806)
Q Consensus 419 ~L~~~sll~~~~---~~~~~mHdlv~d~a~~~ 447 (806)
+|+++||++... ...|+||+++|++++..
T Consensus 417 ~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 417 EFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 999999998652 34799999999999877
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=2.1e-22 Score=216.11 Aligned_cols=243 Identities=16% Similarity=0.245 Sum_probs=174.5
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
+++.+.++.+..++....+++|++|++++|.++.+++ +..+++|++|++++| .+..+| .+..+++|++|++++|.+
T Consensus 47 ~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~i 122 (347)
T 4fmz_A 47 TKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDNI 122 (347)
T ss_dssp SEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSCC
T ss_pred cEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCcc
Confidence 6788888888888887889999999999999988877 889999999999999 455555 689999999999999999
Q ss_pred cccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeE
Q 037138 541 RELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTI 620 (806)
Q Consensus 541 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 620 (806)
..+|. +..+++|++|++++|.....++. +..+++|++|++++|.+... ..+..+++|+.|++
T Consensus 123 ~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~---------------~~~~~l~~L~~L~l 184 (347)
T 4fmz_A 123 SDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDV---------------TPIANLTDLYSLSL 184 (347)
T ss_dssp CCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCC---------------GGGGGCTTCSEEEC
T ss_pred cCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCc---------------hhhccCCCCCEEEc
Confidence 98886 88999999999999976666665 88999999999999887654 12667788888888
Q ss_pred EecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCcc--------ccceeeecccCCcC
Q 037138 621 ALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLE--------EFKKVMIDFCIKLR 692 (806)
Q Consensus 621 ~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~--------~L~~L~l~~c~~l~ 692 (806)
+.|.+..+.. +..+..+..+....+...... .+..+++|+.|++++|.... .|+.|.+++| .++
T Consensus 185 ~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~ 256 (347)
T 4fmz_A 185 NYNQIEDISP------LASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN-QIS 256 (347)
T ss_dssp TTSCCCCCGG------GGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCC
T ss_pred cCCccccccc------ccCCCccceeecccCCCCCCc-hhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCC-ccC
Confidence 7776654432 223333344444443332222 25666777777777764322 2666666665 344
Q ss_pred CCCccccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceeccccc
Q 037138 693 EVTWLVFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRAL 747 (806)
Q Consensus 693 ~~~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~ 747 (806)
.++.+..+++|+.|++++|.+ ..+| .+..+++|+.|++++|
T Consensus 257 ~~~~~~~l~~L~~L~l~~n~l----------~~~~----~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 257 DINAVKDLTKLKMLNVGSNQI----------SDIS----VLNNLSQLNSLFLNNN 297 (347)
T ss_dssp CCGGGTTCTTCCEEECCSSCC----------CCCG----GGGGCTTCSEEECCSS
T ss_pred CChhHhcCCCcCEEEccCCcc----------CCCh----hhcCCCCCCEEECcCC
Confidence 445566677777777777765 2222 2344566777776664
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=2e-22 Score=226.37 Aligned_cols=289 Identities=18% Similarity=0.195 Sum_probs=184.6
Q ss_pred EeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccc
Q 037138 463 ISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRE 542 (806)
Q Consensus 463 ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~ 542 (806)
+....+.+..+|.. -.+++++|++++|.++.+++..|..+++|++|+|++|.+.+..|..|.++++|++|+|++|.++.
T Consensus 16 v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 94 (477)
T 2id5_A 16 VLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94 (477)
T ss_dssp EECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred EEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc
Confidence 44445556666643 23678888888888888877778888888888888886655567788888888888888888888
Q ss_pred cChh-hhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEE
Q 037138 543 LPKE-LKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIA 621 (806)
Q Consensus 543 lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 621 (806)
+|.. +.++++|++|++++|.+ ..++...+..+++|++|++++|.+.+..+ ..+..+++|+.|+++
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~~~~l~~L~~L~l~ 160 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLVYISH-------------RAFSGLNSLEQLTLE 160 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEEECCTTCCEECT-------------TSSTTCTTCCEEEEE
T ss_pred cCcccccCCCCCCEEECCCCcc-ccCChhHccccccCCEEECCCCccceeCh-------------hhccCCCCCCEEECC
Confidence 8764 67888888888888874 44443447888888888888887764322 346677788888888
Q ss_pred ecchhhHHHhhhchhhccccccceeccCCCCCcccc-cccccccccceEeeccccCcc----------ccceeeecccCC
Q 037138 622 LKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNI-YSLADLKHLDKLDLIYCRNLE----------EFKKVMIDFCIK 690 (806)
Q Consensus 622 ~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~----------~L~~L~l~~c~~ 690 (806)
.|.+..+.. ..+..+..+..|....+...... ..+..+++|+.|++++|.... .|+.|++++|..
T Consensus 161 ~n~l~~~~~----~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 236 (477)
T 2id5_A 161 KCNLTSIPT----EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236 (477)
T ss_dssp SCCCSSCCH----HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC
T ss_pred CCcCcccCh----hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc
Confidence 777654331 12233344444444444332222 356777888888888765433 377777777643
Q ss_pred cCCCC--ccccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceeccccc-------------cccccccc
Q 037138 691 LREVT--WLVFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRAL-------------PSLKSIYW 755 (806)
Q Consensus 691 l~~~~--~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~-------------~~L~~l~~ 755 (806)
+.++ .+..+++|+.|+|++|.+. .++. ..+..+++|+.|+|+++ ++|+.+..
T Consensus 237 -~~~~~~~~~~l~~L~~L~Ls~n~l~----------~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 237 -TAVPYLAVRHLVYLRFLNLSYNPIS----------TIEG--SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp -CSCCHHHHTTCTTCCEEECCSSCCC----------EECT--TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC
T ss_pred -cccCHHHhcCccccCeeECCCCcCC----------ccCh--hhccccccCCEEECCCCccceECHHHhcCcccCCEEEC
Confidence 3333 4567788888888887762 2221 22344556666666542 23333333
Q ss_pred CCCCCchHHHH-HccCCCCCCCCCCCCcc
Q 037138 756 NALPSHIWKKL-IMGCAGLKKLPLDSNSR 783 (806)
Q Consensus 756 ~~~~~~~L~~l-l~~c~~L~~L~l~~n~~ 783 (806)
....+..+..- +..|++|+.|++++|.+
T Consensus 304 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 304 SGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred CCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 22222222222 45667777777777764
No 7
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=7.6e-22 Score=215.34 Aligned_cols=135 Identities=18% Similarity=0.205 Sum_probs=78.6
Q ss_pred CCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccCh-hhhcCCCCcEE
Q 037138 478 TCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPK-ELKALVNLKYL 556 (806)
Q Consensus 478 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L 556 (806)
.+++++.|++++|.++.+|...|..+++|++|++++|.+.+..|..+..+++|++|++++|.++.+|. .++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 34566666666666666666666666666666666664333333456666666666666666665533 35666666666
Q ss_pred ecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchh
Q 037138 557 NLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFF 626 (806)
Q Consensus 557 ~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 626 (806)
++++|. +..+|...+.++++|++|++++|.+.+..+ ..+..+++|+.|+++.|.+.
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-------------~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIED-------------DTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCT-------------TTTSSCTTCCEEECCSSCCS
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccCh-------------hhccCCCCCCEEECCCCcCC
Confidence 666665 345555545666666666666665554322 23455566666666655544
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=7.6e-22 Score=227.42 Aligned_cols=135 Identities=18% Similarity=0.205 Sum_probs=79.3
Q ss_pred CCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccCh-hhhcCCCCcEE
Q 037138 478 TCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPK-ELKALVNLKYL 556 (806)
Q Consensus 478 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L 556 (806)
.+++++.|++++|.+..+|+.+|..+++|++|+|++|.+.+..|..|+.+++|++|+|++|.++.+|. .++++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 34556666666666666666666666666666666664444444466666666666666666665543 34666666666
Q ss_pred ecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchh
Q 037138 557 NLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFF 626 (806)
Q Consensus 557 ~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 626 (806)
+|++|. +..+|...++++++|++|++++|.+.+..| ..+..+++|+.|+++.|.+.
T Consensus 129 ~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-------------~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 129 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIED-------------DTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCT-------------TTTTTCTTCCEEECTTSCCS
T ss_pred EeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCCh-------------hhhhcCCcCcEEECcCCCCC
Confidence 666665 345555545666666666666666554332 23455566666666555544
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=3.2e-22 Score=218.36 Aligned_cols=149 Identities=13% Similarity=0.173 Sum_probs=123.7
Q ss_pred EEEeeecccccccCCC--CCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCC
Q 037138 461 RRISLMRNKIEKLSDT--PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKT 538 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n 538 (806)
+.+.+..+.+..+|.. ..+++|++|++++|.+..+++..|..+++|++|++++|.+.+..|..++.+++|++|++++|
T Consensus 48 ~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 127 (390)
T 3o6n_A 48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127 (390)
T ss_dssp SEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC
Confidence 7788888888888763 67899999999999999999888999999999999999666666777999999999999999
Q ss_pred CccccChh-hhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCe
Q 037138 539 SIRELPKE-LKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNV 617 (806)
Q Consensus 539 ~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 617 (806)
.++.+|.. ++++++|++|++++|.+ ..++...+..+++|++|++++|.+.+. .+..+++|+.
T Consensus 128 ~l~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------~~~~l~~L~~ 190 (390)
T 3o6n_A 128 DLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHV----------------DLSLIPSLFH 190 (390)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTSSCTTCCEEECCSSCCSBC----------------CGGGCTTCSE
T ss_pred ccCcCCHHHhcCCCCCcEEECCCCcc-CccChhhccCCCCCCEEECCCCcCCcc----------------ccccccccce
Confidence 99999987 48999999999999984 556555589999999999999988753 2344556666
Q ss_pred eeEEecchh
Q 037138 618 LTIALKSFF 626 (806)
Q Consensus 618 L~l~~~~~~ 626 (806)
|+++.|.+.
T Consensus 191 L~l~~n~l~ 199 (390)
T 3o6n_A 191 ANVSYNLLS 199 (390)
T ss_dssp EECCSSCCS
T ss_pred eeccccccc
Confidence 666555443
No 10
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=4.2e-21 Score=214.51 Aligned_cols=116 Identities=22% Similarity=0.322 Sum_probs=83.9
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
+.+.+.++.+..++....+++|++|++++|.+..+++ +..+++|++|++++|. +..++. ++++++|++|++++|.+
T Consensus 49 ~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~l 124 (466)
T 1o6v_A 49 TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTLFNNQI 124 (466)
T ss_dssp CEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC
T ss_pred cEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCc-cccChh-hcCCCCCCEEECCCCCC
Confidence 6677777777777766777888888888888777766 7788888888888884 444444 77888888888888888
Q ss_pred cccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEee
Q 037138 541 RELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMV 584 (806)
Q Consensus 541 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~ 584 (806)
+.+|. +.++++|++|++++|. +..+|. +..+++|++|+++
T Consensus 125 ~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 125 TDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFG 164 (466)
T ss_dssp CCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEE
T ss_pred CCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecC
Confidence 77765 7778888888888776 444553 5555555555554
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=1.7e-21 Score=217.34 Aligned_cols=133 Identities=21% Similarity=0.249 Sum_probs=102.8
Q ss_pred EEEeeecccccccC--CCCCCCccccccccccchh-cchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecC
Q 037138 461 RRISLMRNKIEKLS--DTPTCPHLLSLFPNINRLK-TIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSK 537 (806)
Q Consensus 461 ~~ls~~~~~~~~~~--~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~ 537 (806)
+++.+.++.+..++ ...++++|++|++++|.+. .+++..|..+++|++|+|++|.+.+..|..++++++|++|++++
T Consensus 33 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 112 (455)
T 3v47_A 33 NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ 112 (455)
T ss_dssp CEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTT
T ss_pred CEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCC
Confidence 67788888877753 2477888888888888775 56667788888888888888866666688888888888888888
Q ss_pred CCccc-cChh--hhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCC
Q 037138 538 TSIRE-LPKE--LKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIP 593 (806)
Q Consensus 538 n~l~~-lp~~--i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 593 (806)
|.++. +|.. ++.+++|++|++++|.+....|...+.++++|++|++++|.+.+..+
T Consensus 113 n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 113 CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp SCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred CCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 88874 4444 78888888888888885544465557888888999888888776543
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=1.2e-21 Score=207.56 Aligned_cols=224 Identities=20% Similarity=0.288 Sum_probs=164.2
Q ss_pred CCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEEec
Q 037138 479 CPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYLNL 558 (806)
Q Consensus 479 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L 558 (806)
.++++.|++++|.+..+|.. +..+++|++|+|++|.+ ..+|..++.+++|++|+|++|.++.+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l-~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGL-MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCC-CCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCc-cchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 46788999999988888776 56699999999999954 48898999999999999999999999999999999999999
Q ss_pred CCCcccccccccccc---------CCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHH
Q 037138 559 EHSRYLHTIPRQLIC---------SFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQ 629 (806)
Q Consensus 559 ~~~~~l~~lp~~~~~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 629 (806)
++|+.++.+|.. +. .+++|++|++++|.+. .+| ..+..+++|+.|+++.|.+..+.
T Consensus 158 ~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp-------------~~l~~l~~L~~L~L~~N~l~~l~ 222 (328)
T 4fcg_A 158 RACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR-SLP-------------ASIANLQNLKSLKIRNSPLSALG 222 (328)
T ss_dssp EEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC-CCC-------------GGGGGCTTCCEEEEESSCCCCCC
T ss_pred CCCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC-cch-------------HhhcCCCCCCEEEccCCCCCcCc
Confidence 998888888876 43 4899999999999877 444 45788899999999887664321
Q ss_pred HhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCCCccccCCCcceEeee
Q 037138 630 RFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFAPNLKSIHIA 709 (806)
Q Consensus 630 ~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~ 709 (806)
+.+..+++|+.|++++|...+. .+..+..+++|+.|+|+
T Consensus 223 ----------------------------~~l~~l~~L~~L~Ls~n~~~~~-------------~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 223 ----------------------------PAIHHLPKLEELDLRGCTALRN-------------YPPIFGGRAPLKRLILK 261 (328)
T ss_dssp ----------------------------GGGGGCTTCCEEECTTCTTCCB-------------CCCCTTCCCCCCEEECT
T ss_pred ----------------------------hhhccCCCCCEEECcCCcchhh-------------hHHHhcCCCCCCEEECC
Confidence 1345567777777777653321 12345666777777777
Q ss_pred cCccchhhhcccccCccccccCCCCcccccceecccccccccccccCCCCCchHHHHHccCCCCCCCCCCCCc
Q 037138 710 NCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKSIYWNALPSHIWKKLIMGCAGLKKLPLDSNS 782 (806)
Q Consensus 710 ~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~ll~~c~~L~~L~l~~n~ 782 (806)
+|... +.+|. .+..+++|++|+|++|+.+..++.. +.++++|+.+.+..|.
T Consensus 262 ~n~~~---------~~~p~---~~~~l~~L~~L~L~~n~~~~~iP~~----------l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 262 DCSNL---------LTLPL---DIHRLTQLEKLDLRGCVNLSRLPSL----------IAQLPANCIILVPPHL 312 (328)
T ss_dssp TCTTC---------CBCCT---TGGGCTTCCEEECTTCTTCCCCCGG----------GGGSCTTCEEECCGGG
T ss_pred CCCch---------hhcch---hhhcCCCCCEEeCCCCCchhhccHH----------HhhccCceEEeCCHHH
Confidence 77662 44554 2344567777777776666555422 3455666666655443
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=2.9e-21 Score=215.56 Aligned_cols=152 Identities=14% Similarity=0.214 Sum_probs=125.0
Q ss_pred EEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCccccc-CcccCCCCCCCEEEecCCCc
Q 037138 462 RISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKL-RPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 462 ~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~l~~L~~L~Ls~n~l 540 (806)
.+....+.+..+|. -.++|++|++++|.++.+++..|..+++|++|++++|...+.+ |..+.++++|++|+|++|.+
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 34555667777776 3379999999999999998888999999999999999666555 56799999999999999999
Q ss_pred ccc-ChhhhcCCCCcEEecCCCcccccccc-ccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCee
Q 037138 541 REL-PKELKALVNLKYLNLEHSRYLHTIPR-QLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVL 618 (806)
Q Consensus 541 ~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 618 (806)
+.+ |..++++++|++|++++|.+.+.+|. ..+..+++|++|++++|.+.+..|. ..+..+++|+.|
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~~~~~l~~L~~L 159 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA------------SFFLNMRRFHVL 159 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC------------GGGGGCTTCCEE
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc------------cccCCCCcccEE
Confidence 966 77899999999999999986543333 3478999999999999998876441 127788999999
Q ss_pred eEEecchhh
Q 037138 619 TIALKSFFA 627 (806)
Q Consensus 619 ~l~~~~~~~ 627 (806)
+++.|.+..
T Consensus 160 ~L~~n~l~~ 168 (455)
T 3v47_A 160 DLTFNKVKS 168 (455)
T ss_dssp ECTTCCBSC
T ss_pred eCCCCcccc
Confidence 998887654
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=221.16 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=124.6
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
+.+.+.++.+..+|.... ++|++|++++|.+..+++..|..+++|++|+|++|.+.+..|..++++++|++|+|++|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 467888888988886533 8999999999999999988899999999999999977666788999999999999999999
Q ss_pred cccChhhhcCCCCcEEecCCCcccc-ccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCC--Ce
Q 037138 541 RELPKELKALVNLKYLNLEHSRYLH-TIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHL--NV 617 (806)
Q Consensus 541 ~~lp~~i~~L~~L~~L~L~~~~~l~-~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L--~~ 617 (806)
+.+|.. .+++|++|++++|.+.+ .+|.. ++++++|++|++++|.+.+. .+..+++| +.
T Consensus 82 ~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~~----------------~~~~l~~L~L~~ 142 (520)
T 2z7x_B 82 VKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEKS----------------SVLPIAHLNISK 142 (520)
T ss_dssp CEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCGG----------------GGGGGTTSCEEE
T ss_pred eecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccchh----------------hccccccceeeE
Confidence 999987 89999999999998544 36665 89999999999999987642 45566666 89
Q ss_pred eeEEecch
Q 037138 618 LTIALKSF 625 (806)
Q Consensus 618 L~l~~~~~ 625 (806)
|+++.|.+
T Consensus 143 L~l~~n~l 150 (520)
T 2z7x_B 143 VLLVLGET 150 (520)
T ss_dssp EEEEECTT
T ss_pred EEeecccc
Confidence 99998876
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=1.4e-21 Score=223.62 Aligned_cols=133 Identities=25% Similarity=0.312 Sum_probs=101.1
Q ss_pred EEEeeecccccccC--CCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCC
Q 037138 461 RRISLMRNKIEKLS--DTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKT 538 (806)
Q Consensus 461 ~~ls~~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n 538 (806)
+.+.+.++.+..++ ...++++|++|++++|.+..+++..|..+++|++|++++|.+.+..|..++++++|++|++++|
T Consensus 29 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 29 KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108 (549)
T ss_dssp CEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC
T ss_pred cEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC
Confidence 67777777777653 3467888888888888888887777888888888888888555544555888888888888888
Q ss_pred Cccc--cChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCC
Q 037138 539 SIRE--LPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIP 593 (806)
Q Consensus 539 ~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 593 (806)
.++. .|..++++++|++|++++|...+.+|...+.++++|++|++++|.+.+..|
T Consensus 109 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 8874 466788888888888888876677775557888888888888887765443
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=3.9e-21 Score=222.76 Aligned_cols=127 Identities=19% Similarity=0.130 Sum_probs=88.4
Q ss_pred EEEeeecccccccC--CCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCC
Q 037138 461 RRISLMRNKIEKLS--DTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKT 538 (806)
Q Consensus 461 ~~ls~~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n 538 (806)
+++.+.+|.+..++ ...++++|++|++++|.+..+.+..|.++++|++|+|++|.+.+..|..++++++|++|++++|
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 115 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS
T ss_pred cEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc
Confidence 66677777776653 2366777777777777777776666777777777777777655556677777777777777777
Q ss_pred Ccccc-ChhhhcCCCCcEEecCCCcccccc--ccccccCCCCCcEEEeecccCCC
Q 037138 539 SIREL-PKELKALVNLKYLNLEHSRYLHTI--PRQLICSFSMLHVLRMVNCDYSG 590 (806)
Q Consensus 539 ~l~~l-p~~i~~L~~L~~L~L~~~~~l~~l--p~~~~~~l~~L~~L~l~~~~~~~ 590 (806)
.++.+ |..++++++|++|++++|.+ ..+ |. +..+++|++|++++|.+.+
T Consensus 116 ~i~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~--~~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 116 GISSIDFIPLHNQKTLESLYLGSNHI-SSIKLPK--GFPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp CCSCGGGSCCTTCTTCCEEECCSSCC-CCCCCCT--TCCCTTCCEEECCSSCCCE
T ss_pred CcccCCcchhccCCcccEEECCCCcc-cccCccc--ccCCcccCEEEcccCcccc
Confidence 77765 45677777777777777764 333 33 4447777777777776654
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=6.5e-22 Score=228.00 Aligned_cols=130 Identities=14% Similarity=0.185 Sum_probs=110.3
Q ss_pred EEEeeecccccccCCC--CCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCC
Q 037138 461 RRISLMRNKIEKLSDT--PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKT 538 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n 538 (806)
+.+.+..+.+..+|.. ..+++|++|++++|.+..+++..|..+++|++|+|++|.+.+..|..++++++|++|+|++|
T Consensus 54 ~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 133 (597)
T 3oja_B 54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133 (597)
T ss_dssp SEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC
Confidence 5667777888877763 57899999999999999998888999999999999999666666667899999999999999
Q ss_pred CccccChh-hhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCC
Q 037138 539 SIRELPKE-LKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGK 591 (806)
Q Consensus 539 ~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~ 591 (806)
.++.+|.. ++++++|++|++++|.+ ..+|+..++.+++|++|++++|.+.+.
T Consensus 134 ~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 134 DLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred CCCCCCHHHhccCCCCCEEEeeCCcC-CCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 99999877 48999999999999985 455554589999999999999987753
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=1.2e-21 Score=230.75 Aligned_cols=150 Identities=17% Similarity=0.237 Sum_probs=124.6
Q ss_pred EEEeeecccccc------------------cCCC-C--CCCccccccccccchhcchhHhhccCCcccEEEccCCC-ccc
Q 037138 461 RRISLMRNKIEK------------------LSDT-P--TCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNG-FLT 518 (806)
Q Consensus 461 ~~ls~~~~~~~~------------------~~~~-~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~-~~~ 518 (806)
+.+.+.+|.+.. +|.. . ++++|++|++++|.+....+..|..+++|++|+|++|+ +.+
T Consensus 451 ~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg 530 (876)
T 4ecn_A 451 QIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA 530 (876)
T ss_dssp CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH
T ss_pred CEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc
Confidence 788888888887 7765 3 79999999999998766656779999999999999997 665
Q ss_pred -ccCcccCCCC-------CCCEEEecCCCccccCh--hhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccC
Q 037138 519 -KLRPGISKLV-------SLQYLNLSKTSIRELPK--ELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDY 588 (806)
Q Consensus 519 -~lp~~i~~l~-------~L~~L~Ls~n~l~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~ 588 (806)
.+|..++.+. +|++|+|++|.++.+|. .++++++|++|++++|.+ ..+| . ++.+++|+.|++++|.+
T Consensus 531 ~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp-~-~~~L~~L~~L~Ls~N~l 607 (876)
T 4ecn_A 531 AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLE-A-FGTNVKLTDLKLDYNQI 607 (876)
T ss_dssp HHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCC-CBCC-C-CCTTSEESEEECCSSCC
T ss_pred ccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCc-ccch-h-hcCCCcceEEECcCCcc
Confidence 6888777665 99999999999999999 899999999999999985 5899 4 89999999999999988
Q ss_pred CCCCCCCccccCCccchHHHhcCCCC-CCeeeEEecchhh
Q 037138 589 SGKIPLDSILFGGCESLVEELISLKH-LNVLTIALKSFFA 627 (806)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~l~~L~~-L~~L~l~~~~~~~ 627 (806)
. .+| ..+..+++ |+.|+++.|.+..
T Consensus 608 ~-~lp-------------~~l~~l~~~L~~L~Ls~N~L~~ 633 (876)
T 4ecn_A 608 E-EIP-------------EDFCAFTDQVEGLGFSHNKLKY 633 (876)
T ss_dssp S-CCC-------------TTSCEECTTCCEEECCSSCCCS
T ss_pred c-cch-------------HHHhhccccCCEEECcCCCCCc
Confidence 7 555 24556666 7777777666553
No 19
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=1.7e-21 Score=205.35 Aligned_cols=223 Identities=19% Similarity=0.214 Sum_probs=115.2
Q ss_pred Cccccccccccchhc--chhHhhccCCcccEEEccC-CCcccccCcccCCCCCCCEEEecCCCcc-ccChhhhcCCCCcE
Q 037138 480 PHLLSLFPNINRLKT--IARRFFDFMPSLTVLNLSN-NGFLTKLRPGISKLVSLQYLNLSKTSIR-ELPKELKALVNLKY 555 (806)
Q Consensus 480 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~-~~~~~~lp~~i~~l~~L~~L~Ls~n~l~-~lp~~i~~L~~L~~ 555 (806)
.+++.|++++|.+.+ ..+..|..+++|++|++++ |.+.+.+|..++++++|++|++++|.++ .+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 345555555555543 2223355555555555553 4444455555555555555555555555 55555555555555
Q ss_pred EecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCC-CCCeeeEEecchhhHHHhhhc
Q 037138 556 LNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLK-HLNVLTIALKSFFALQRFLSS 634 (806)
Q Consensus 556 L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~l~~~~~~~~~~~~~~ 634 (806)
|++++|.+.+.+|.. +..+++|++|++++|.+.+.+| ..+..++ +|+.|+++.|.+.+.. +
T Consensus 130 L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p-------------~~l~~l~~~L~~L~L~~N~l~~~~----~ 191 (313)
T 1ogq_A 130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIP-------------DSYGSFSKLFTSMTISRNRLTGKI----P 191 (313)
T ss_dssp EECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEECC-------------GGGGCCCTTCCEEECCSSEEEEEC----C
T ss_pred EeCCCCccCCcCChH-HhcCCCCCeEECcCCcccCcCC-------------HHHhhhhhcCcEEECcCCeeeccC----C
Confidence 555555543345543 5555555555555555544333 3344454 5555555555443111 1
Q ss_pred hhhccccccceeccCCCCCcc-cccccccccccceEeeccccCccccceeeecccCCcCCCCccccCCCcceEeeecCcc
Q 037138 635 HELQNCTKSLNLRYYDDSKSF-NIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFAPNLKSIHIANCHF 713 (806)
Q Consensus 635 ~~l~~~~~~l~L~~~~~~~~~-~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~~~~ 713 (806)
..+... .+..|+...|.... ....+..+++|+.|++++|.... .++.+..+++|++|+|++|.+
T Consensus 192 ~~~~~l-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------------~~~~~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 192 PTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF--------------DLGKVGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp GGGGGC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC--------------BGGGCCCCTTCCEEECCSSCC
T ss_pred hHHhCC-cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee--------------ecCcccccCCCCEEECcCCcc
Confidence 111111 13333333332221 12256677888888888775321 122344567777777777766
Q ss_pred chhhhcccccCccccccCCCCcccccceeccccc
Q 037138 714 MQEIISARKLGEVPELIGNLKPFAKLQYLHLRAL 747 (806)
Q Consensus 714 ~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~ 747 (806)
.+.+|.. +..+++|++|+|+++
T Consensus 257 ---------~~~~p~~---l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 257 ---------YGTLPQG---LTQLKFLHSLNVSFN 278 (313)
T ss_dssp ---------EECCCGG---GGGCTTCCEEECCSS
T ss_pred ---------cCcCChH---HhcCcCCCEEECcCC
Confidence 2345543 334457777777764
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=1.8e-21 Score=229.29 Aligned_cols=224 Identities=15% Similarity=0.165 Sum_probs=160.1
Q ss_pred ccccccCC-CCCCCccccccccccchhc------------------chhHh-hccCCcccEEEccCCCcccccCcccCCC
Q 037138 468 NKIEKLSD-TPTCPHLLSLFPNINRLKT------------------IARRF-FDFMPSLTVLNLSNNGFLTKLRPGISKL 527 (806)
Q Consensus 468 ~~~~~~~~-~~~~~~L~~L~l~~n~l~~------------------~~~~~-~~~l~~L~~L~Ls~~~~~~~lp~~i~~l 527 (806)
|.+..+|. ..++++|++|++++|.++. +|..+ |..+++|++|+|++|.+.+.+|..++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 44444654 3678999999999999988 66653 3499999999999998899999999999
Q ss_pred CCCCEEEecCCC-cc--ccChhhhcCC-------CCcEEecCCCcccccccc--ccccCCCCCcEEEeecccCCCCCCCC
Q 037138 528 VSLQYLNLSKTS-IR--ELPKELKALV-------NLKYLNLEHSRYLHTIPR--QLICSFSMLHVLRMVNCDYSGKIPLD 595 (806)
Q Consensus 528 ~~L~~L~Ls~n~-l~--~lp~~i~~L~-------~L~~L~L~~~~~l~~lp~--~~~~~l~~L~~L~l~~~~~~~~~~~~ 595 (806)
++|++|+|++|. ++ .+|..+++++ +|++|++++|.+ ..+|. . ++++++|++|++++|.+. .+|
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~-l~~L~~L~~L~Ls~N~l~-~lp-- 589 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL-EEFPASAS-LQKMVKLGLLDCVHNKVR-HLE-- 589 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC-CBCCCHHH-HTTCTTCCEEECTTSCCC-BCC--
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC-CccCChhh-hhcCCCCCEEECCCCCcc-cch--
Confidence 999999999998 88 4898888777 999999999985 58997 5 899999999999999887 433
Q ss_pred ccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhchhhccccc-cceeccCCCCCcccccccccc--cccceEeec
Q 037138 596 SILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSHELQNCTK-SLNLRYYDDSKSFNIYSLADL--KHLDKLDLI 672 (806)
Q Consensus 596 ~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~-~l~L~~~~~~~~~~~~~l~~l--~~L~~L~L~ 672 (806)
.+..+++|+.|+++.|.+..++ ..+..+.. +..|....|........+..+ ++|+.|+|+
T Consensus 590 ------------~~~~L~~L~~L~Ls~N~l~~lp-----~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 590 ------------AFGTNVKLTDLKLDYNQIEEIP-----EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp ------------CCCTTSEESEEECCSSCCSCCC-----TTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECC
T ss_pred ------------hhcCCCcceEEECcCCccccch-----HHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECc
Confidence 5778899999999999876443 22444444 445555544433222233333 237777777
Q ss_pred cccCcc---------------ccceeeecccCCcCCCCcc-ccCCCcceEeeecCcc
Q 037138 673 YCRNLE---------------EFKKVMIDFCIKLREVTWL-VFAPNLKSIHIANCHF 713 (806)
Q Consensus 673 ~~~~~~---------------~L~~L~l~~c~~l~~~~~l-~~l~~L~~L~L~~~~~ 713 (806)
+|.... .|+.|++++|.....+..+ ..+++|+.|+|++|.+
T Consensus 653 ~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp SSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC
T ss_pred CCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC
Confidence 664321 2555666655433222222 2455666666666554
No 21
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=4.2e-21 Score=227.80 Aligned_cols=134 Identities=23% Similarity=0.296 Sum_probs=96.4
Q ss_pred CCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCcc-ccChhhhcCCCCcEEe
Q 037138 479 CPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIR-ELPKELKALVNLKYLN 557 (806)
Q Consensus 479 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~ 557 (806)
+++|+.|++++|.+....+..|..+++|++|++++|.+.+.+|..++.+++|++|++++|.+. .+|..++.+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 566777777777776555555777777777777777666677777777777777777777776 6677777777777777
Q ss_pred cCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchh
Q 037138 558 LEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFF 626 (806)
Q Consensus 558 L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 626 (806)
+++|.+.+.+|.. +.++++|++|++++|.+.+.+| ..++.+++|+.|+++.|.+.
T Consensus 473 L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p-------------~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 473 LDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIP-------------KWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp CCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCC-------------GGGGGCTTCCEEECCSSCCE
T ss_pred ecCCcccCcCCHH-HhcCCCCCEEEccCCccCCcCC-------------hHHhcCCCCCEEECCCCccc
Confidence 7777765566665 6777777777777777776655 45667777777777777664
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=8.3e-21 Score=219.99 Aligned_cols=149 Identities=20% Similarity=0.211 Sum_probs=88.9
Q ss_pred EeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccc
Q 037138 463 ISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRE 542 (806)
Q Consensus 463 ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~ 542 (806)
+...++.+..+|... .+++++|++++|.++.+++..|.++++|++|++++|.+.+..|..|+++++|++|+|++|.++.
T Consensus 16 ~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 16 YQCMDQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94 (606)
T ss_dssp EECTTSCCSSCCTTS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC
T ss_pred eEccCCCcccCCCCC-CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc
Confidence 344444555555422 2566666666666666666556666666666666664444445566666666666666666665
Q ss_pred c-ChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCC-CCCCCccccCCccchHHHhcCCCCCCeeeE
Q 037138 543 L-PKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSG-KIPLDSILFGGCESLVEELISLKHLNVLTI 620 (806)
Q Consensus 543 l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 620 (806)
+ |..++++++|++|++++|. +..+|...++++++|++|++++|.+.+ .+| ..+..+++|+.|++
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp-------------~~~~~l~~L~~L~L 160 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLP-------------AYFSNLTNLVHVDL 160 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCC-------------GGGGTCTTCCEEEC
T ss_pred cChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceech-------------HhHhhcCCCCEEEc
Confidence 5 5566666666666666665 344443336666666666666666553 223 34566666666666
Q ss_pred Eecchh
Q 037138 621 ALKSFF 626 (806)
Q Consensus 621 ~~~~~~ 626 (806)
+.|.+.
T Consensus 161 s~n~l~ 166 (606)
T 3vq2_A 161 SYNYIQ 166 (606)
T ss_dssp CSSCCC
T ss_pred cCCcce
Confidence 665543
No 23
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=2.3e-21 Score=230.03 Aligned_cols=237 Identities=24% Similarity=0.213 Sum_probs=117.5
Q ss_pred EEEeeeccccc-ccCCC--CCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcc-cCCCCCCCEEEec
Q 037138 461 RRISLMRNKIE-KLSDT--PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPG-ISKLVSLQYLNLS 536 (806)
Q Consensus 461 ~~ls~~~~~~~-~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~-i~~l~~L~~L~Ls 536 (806)
+.+.+..|.+. .+|.. ..+++|++|++++|.+....+..|..+++|++|++++|.+.+.+|.. ++.+++|++|+++
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence 44555555544 33322 12355666666666555444444555666666666655444455543 5555555555555
Q ss_pred CCCcc-ccChhhhcCC-CCcEEecCCCccccccccc-------------------------cccCCCCCcEEEeecccCC
Q 037138 537 KTSIR-ELPKELKALV-NLKYLNLEHSRYLHTIPRQ-------------------------LICSFSMLHVLRMVNCDYS 589 (806)
Q Consensus 537 ~n~l~-~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~-------------------------~~~~l~~L~~L~l~~~~~~ 589 (806)
+|.++ .+|..+.+++ +|++|++++|.+.+.+|.. .++++++|++|++++|.+.
T Consensus 352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc
Confidence 55555 5555555444 4455544444433333332 1344444444444444443
Q ss_pred CCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhchhhccccccceeccCCCCCcccc-cccccccccce
Q 037138 590 GKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNI-YSLADLKHLDK 668 (806)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~-~~l~~l~~L~~ 668 (806)
+.+| ..+..+++|+.|+++.|.+.+.. +..+..+..+..|+...|...... ..+..+++|+.
T Consensus 432 ~~~p-------------~~l~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 494 (768)
T 3rgz_A 432 GTIP-------------SSLGSLSKLRDLKLWLNMLEGEI----PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494 (768)
T ss_dssp SCCC-------------GGGGGCTTCCEEECCSSCCCSCC----CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred Cccc-------------HHHhcCCCCCEEECCCCcccCcC----CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCE
Confidence 3322 34555555555655555543211 122333334444444444333222 24556666666
Q ss_pred EeeccccCcc----------ccceeeecccCCcCC-CCccccCCCcceEeeecCccc
Q 037138 669 LDLIYCRNLE----------EFKKVMIDFCIKLRE-VTWLVFAPNLKSIHIANCHFM 714 (806)
Q Consensus 669 L~L~~~~~~~----------~L~~L~l~~c~~l~~-~~~l~~l~~L~~L~L~~~~~~ 714 (806)
|+|++|...+ .|+.|++++|..... +..+..+++|+.|+|++|.+.
T Consensus 495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 6666664332 256666666554422 335566666777777666654
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=1.5e-20 Score=201.68 Aligned_cols=267 Identities=19% Similarity=0.249 Sum_probs=202.5
Q ss_pred cCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCC
Q 037138 473 LSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVN 552 (806)
Q Consensus 473 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~ 552 (806)
+.....+++|++|++++|.+..++. +..+++|++|++++| .+..+|. +..+++|++|++++|.++.+| .+..+++
T Consensus 37 ~~~~~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~ 111 (347)
T 4fmz_A 37 VVTQEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTN 111 (347)
T ss_dssp EECHHHHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTT
T ss_pred cccchhcccccEEEEeCCccccchh--hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCc
Confidence 3334567899999999999988865 889999999999999 5556665 999999999999999999886 6999999
Q ss_pred CcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhh
Q 037138 553 LKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFL 632 (806)
Q Consensus 553 L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 632 (806)
|++|++++|. +..+|. +..+++|++|++++|.....++ .+..+++|+.|+++.+.+.....
T Consensus 112 L~~L~l~~n~-i~~~~~--~~~l~~L~~L~l~~n~~~~~~~--------------~~~~l~~L~~L~l~~~~~~~~~~-- 172 (347)
T 4fmz_A 112 LRELYLNEDN-ISDISP--LANLTKMYSLNLGANHNLSDLS--------------PLSNMTGLNYLTVTESKVKDVTP-- 172 (347)
T ss_dssp CSEEECTTSC-CCCCGG--GTTCTTCCEEECTTCTTCCCCG--------------GGTTCTTCCEEECCSSCCCCCGG--
T ss_pred CCEEECcCCc-ccCchh--hccCCceeEEECCCCCCccccc--------------chhhCCCCcEEEecCCCcCCchh--
Confidence 9999999998 567776 8899999999999997654433 47889999999999888765542
Q ss_pred hchhhccccccceeccCCCCCcccccccccccccceEeeccccCc--------cccceeeecccCCcCCCCccccCCCcc
Q 037138 633 SSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNL--------EEFKKVMIDFCIKLREVTWLVFAPNLK 704 (806)
Q Consensus 633 ~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~--------~~L~~L~l~~c~~l~~~~~l~~l~~L~ 704 (806)
+..+..+..++...+..... +.+..+++|+.|++++|... ..|+.|.+++|.. +..+.+..+++|+
T Consensus 173 ----~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~ 246 (347)
T 4fmz_A 173 ----IANLTDLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKI-TDLSPLANLSQLT 246 (347)
T ss_dssp ----GGGCTTCSEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC-CCCGGGTTCTTCC
T ss_pred ----hccCCCCCEEEccCCccccc-ccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCcc-CCCcchhcCCCCC
Confidence 33444555555555543332 24788899999999998643 2489999998754 4444588899999
Q ss_pred eEeeecCccchhhhcccccCccccccCCCCcccccceeccccc-----------ccccccccCCCCCchHHHH-HccCCC
Q 037138 705 SIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRAL-----------PSLKSIYWNALPSHIWKKL-IMGCAG 772 (806)
Q Consensus 705 ~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~-----------~~L~~l~~~~~~~~~L~~l-l~~c~~ 772 (806)
.|++++|.+ ..++ .+..+++|++|+++++ ++|+.+......+.....- +.+|++
T Consensus 247 ~L~l~~n~l----------~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 247 WLEIGTNQI----------SDIN----AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp EEECCSSCC----------CCCG----GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred EEECCCCcc----------CCCh----hHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence 999999987 2333 3556789999999874 4444444444443333222 677888
Q ss_pred CCCCCCCCCcc
Q 037138 773 LKKLPLDSNSR 783 (806)
Q Consensus 773 L~~L~l~~n~~ 783 (806)
|+.|++++|..
T Consensus 313 L~~L~L~~n~l 323 (347)
T 4fmz_A 313 LTTLFLSQNHI 323 (347)
T ss_dssp CSEEECCSSSC
T ss_pred CCEEEccCCcc
Confidence 88888888874
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=4.5e-21 Score=222.27 Aligned_cols=130 Identities=21% Similarity=0.190 Sum_probs=110.0
Q ss_pred EEEeeecccccccCC--CCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCC
Q 037138 461 RRISLMRNKIEKLSD--TPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKT 538 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n 538 (806)
+.+.+.++.+..++. ..++++|++|++++|.++.+++..|.++++|++|+|++|.+.+..|..|+++++|++|++++|
T Consensus 35 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS
T ss_pred CEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC
Confidence 778888888887764 478899999999999998888888999999999999999666666888999999999999999
Q ss_pred CccccC-hhhhcCCCCcEEecCCCcccc-ccccccccCCCCCcEEEeecccCCCC
Q 037138 539 SIRELP-KELKALVNLKYLNLEHSRYLH-TIPRQLICSFSMLHVLRMVNCDYSGK 591 (806)
Q Consensus 539 ~l~~lp-~~i~~L~~L~~L~L~~~~~l~-~lp~~~~~~l~~L~~L~l~~~~~~~~ 591 (806)
.++.+| ..++++++|++|++++|.+.. .+|.. ++++++|++|++++|.+.+.
T Consensus 115 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred ccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceec
Confidence 998776 678999999999999998543 56776 88999999999998877653
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=226.29 Aligned_cols=150 Identities=16% Similarity=0.220 Sum_probs=101.6
Q ss_pred EeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCccccc-CcccCCCCCCCEEEecCCCcc
Q 037138 463 ISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKL-RPGISKLVSLQYLNLSKTSIR 541 (806)
Q Consensus 463 ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~l~~L~~L~Ls~n~l~ 541 (806)
+..+.+.+..+|. -.++|++|++++|.++.+.+..|..+++|++|+|++|...+.+ |..|+++++|++|+|++|.+.
T Consensus 9 ~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp EEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred EEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 3444556666665 4567777777777777776666777777777777777555555 666777777777777777777
Q ss_pred cc-ChhhhcCCCCcEEecCCCcccccccc-ccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeee
Q 037138 542 EL-PKELKALVNLKYLNLEHSRYLHTIPR-QLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLT 619 (806)
Q Consensus 542 ~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 619 (806)
.+ |..++++++|++|+|++|.+.+.+|. ..++++++|++|++++|.+.+..+ ...++.+++|+.|+
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~------------~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL------------HPSFGKLNSLKSID 154 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC------------CGGGGTCSSCCEEE
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc------------chhHhhCCCCCEEE
Confidence 54 66777777777777777765443443 236677777777777777665322 12466777777777
Q ss_pred EEecchh
Q 037138 620 IALKSFF 626 (806)
Q Consensus 620 l~~~~~~ 626 (806)
++.|.+.
T Consensus 155 Ls~N~i~ 161 (844)
T 3j0a_A 155 FSSNQIF 161 (844)
T ss_dssp EESSCCC
T ss_pred CCCCcCC
Confidence 7766553
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1.1e-20 Score=201.18 Aligned_cols=279 Identities=16% Similarity=0.137 Sum_probs=192.1
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
+.+.+.++.+..+|... .++|++|++++|.+..+++..|..+++|++|++++|.+.+..|..++.+++|++|++++|.+
T Consensus 36 ~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 114 (332)
T 2ft3_A 36 RVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114 (332)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC
T ss_pred CEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC
Confidence 56677777888777543 47999999999999999888899999999999999976666688999999999999999999
Q ss_pred cccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCC--CCCCCccccCCccchHHHhcCCCCCCee
Q 037138 541 RELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSG--KIPLDSILFGGCESLVEELISLKHLNVL 618 (806)
Q Consensus 541 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~~~~l~~L~~L~~L 618 (806)
+.+|..+. ++|++|++++|. +..+|...+..+++|++|++++|.+.. ..+ ..+..+ +|+.|
T Consensus 115 ~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------~~~~~l-~L~~L 177 (332)
T 2ft3_A 115 VEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP-------------GAFDGL-KLNYL 177 (332)
T ss_dssp CSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT-------------TSSCSC-CCSCC
T ss_pred CccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCc-------------ccccCC-ccCEE
Confidence 99998776 899999999998 567777768999999999999998753 211 345555 88889
Q ss_pred eEEecchhhHHHhhhchhhccccccceeccCCCCCccc-ccccccccccceEeeccccCcc----------ccceeeecc
Q 037138 619 TIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFN-IYSLADLKHLDKLDLIYCRNLE----------EFKKVMIDF 687 (806)
Q Consensus 619 ~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~----------~L~~L~l~~ 687 (806)
+++.|.+..++. .+...++ .|....+..... ...+..+++|+.|++++|.... .|+.|++++
T Consensus 178 ~l~~n~l~~l~~-----~~~~~L~--~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 178 RISEAKLTGIPK-----DLPETLN--ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250 (332)
T ss_dssp BCCSSBCSSCCS-----SSCSSCS--CCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred ECcCCCCCccCc-----cccCCCC--EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC
Confidence 998888765432 1222333 334444433322 2367788899999998875322 266677766
Q ss_pred cCCcCCCCccccCCCcceEeeecCccchhhhcccccCcccc-ccCCC---CcccccceecccccccccccccCCCCCchH
Q 037138 688 CIKLREVTWLVFAPNLKSIHIANCHFMQEIISARKLGEVPE-LIGNL---KPFAKLQYLHLRALPSLKSIYWNALPSHIW 763 (806)
Q Consensus 688 c~~l~~~~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~-~~~~~---~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L 763 (806)
+.-...+.++..+++|+.|++++|.+. .+|. .+... ..+++|+.|++++++ +..+....
T Consensus 251 N~l~~lp~~l~~l~~L~~L~l~~N~l~----------~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~------ 313 (332)
T 2ft3_A 251 NKLSRVPAGLPDLKLLQVVYLHTNNIT----------KVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQP------ 313 (332)
T ss_dssp SCCCBCCTTGGGCTTCCEEECCSSCCC----------BCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCG------
T ss_pred CcCeecChhhhcCccCCEEECCCCCCC----------ccChhHccccccccccccccceEeecCc-ccccccCc------
Confidence 644444445677777777777777662 2221 11111 124667777777644 22111111
Q ss_pred HHHHccCCCCCCCCCCCCc
Q 037138 764 KKLIMGCAGLKKLPLDSNS 782 (806)
Q Consensus 764 ~~ll~~c~~L~~L~l~~n~ 782 (806)
..+..|++|+.+.+++|.
T Consensus 314 -~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 314 -ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -GGGTTBCCSTTEEC----
T ss_pred -ccccccchhhhhhccccc
Confidence 014567778888777764
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=2e-21 Score=204.64 Aligned_cols=249 Identities=18% Similarity=0.219 Sum_probs=200.1
Q ss_pred EEEEEeeecccccc---cCC-CCCCCccccccccc-cchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEE
Q 037138 459 LRRRISLMRNKIEK---LSD-TPTCPHLLSLFPNI-NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYL 533 (806)
Q Consensus 459 ~~~~ls~~~~~~~~---~~~-~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L 533 (806)
.++.+.+.++.+.. +|. ..++++|++|++++ |.+....+..|..+++|++|++++|.+.+.+|..++.+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 46888999988874 443 47899999999995 88876666669999999999999997777999999999999999
Q ss_pred EecCCCcc-ccChhhhcCCCCcEEecCCCccccccccccccCCC-CCcEEEeecccCCCCCCCCccccCCccchHHHhcC
Q 037138 534 NLSKTSIR-ELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFS-MLHVLRMVNCDYSGKIPLDSILFGGCESLVEELIS 611 (806)
Q Consensus 534 ~Ls~n~l~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 611 (806)
++++|.++ .+|..++.+++|++|++++|.+.+.+|.. +..++ +|++|++++|.+.+.+| ..+..
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~-------------~~~~~ 196 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP-------------PTFAN 196 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECC-------------GGGGG
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCC-------------hHHhC
Confidence 99999999 89999999999999999999976688987 78887 99999999999886655 45666
Q ss_pred CCCCCeeeEEecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCc
Q 037138 612 LKHLNVLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKL 691 (806)
Q Consensus 612 L~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l 691 (806)
++ |+.|+++.|.+.... +..+..+..+..|....|......+.+..+++|++|++++|...+
T Consensus 197 l~-L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~------------- 258 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLEGDA----SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG------------- 258 (313)
T ss_dssp CC-CSEEECCSSEEEECC----GGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEE-------------
T ss_pred Cc-ccEEECcCCcccCcC----CHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccC-------------
Confidence 76 999999998876432 233445566666777666655555567788999999999986321
Q ss_pred CCCCccccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceecccccccccc
Q 037138 692 REVTWLVFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKS 752 (806)
Q Consensus 692 ~~~~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~ 752 (806)
..+.++..+++|+.|+|++|.+ .+.+|. ...+++|+.|++++.+.+..
T Consensus 259 ~~p~~l~~l~~L~~L~Ls~N~l---------~~~ip~----~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 259 TLPQGLTQLKFLHSLNVSFNNL---------CGEIPQ----GGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSEE---------EEECCC----STTGGGSCGGGTCSSSEEES
T ss_pred cCChHHhcCcCCCEEECcCCcc---------cccCCC----CccccccChHHhcCCCCccC
Confidence 1245678899999999999988 346664 25678999999998776654
No 29
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=2.4e-21 Score=224.56 Aligned_cols=305 Identities=13% Similarity=0.126 Sum_probs=162.2
Q ss_pred CCCCccccccccccchhc------------------chhHhhc--cCCcccEEEccCCCcccccCcccCCCCCCCEEEec
Q 037138 477 PTCPHLLSLFPNINRLKT------------------IARRFFD--FMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLS 536 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~~------------------~~~~~~~--~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls 536 (806)
.++++|++|++++|.+++ +|.. +. .+++|++|+|++|.+.+.+|..++++++|++|+++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 455666666666666655 4433 44 66666666666665566666666666666666666
Q ss_pred CCC-cc--ccChhhhcC------CCCcEEecCCCcccccccc--ccccCCCCCcEEEeecccCCCCCCC-------Cccc
Q 037138 537 KTS-IR--ELPKELKAL------VNLKYLNLEHSRYLHTIPR--QLICSFSMLHVLRMVNCDYSGKIPL-------DSIL 598 (806)
Q Consensus 537 ~n~-l~--~lp~~i~~L------~~L~~L~L~~~~~l~~lp~--~~~~~l~~L~~L~l~~~~~~~~~~~-------~~~~ 598 (806)
+|. ++ .+|..++++ ++|++|++++|.+ ..+|. . ++++++|++|++++|.+.+.+|. ....
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l-~~ip~~~~-l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL-KTFPVETS-LQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC-SSCCCHHH-HTTCTTCCEEECCSCCCEEECCCCEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcC-CccCchhh-hccCCCCCEEeCcCCcCccchhhhCCCCCCCEEE
Confidence 665 55 366666555 6666666666653 35665 3 56666666666666666544430 0000
Q ss_pred cCC--ccchHHHhcCCCC-CCeeeEEecchhhHHHhhhchhhccccccceeccCCCCCcccc-cccc-------cccccc
Q 037138 599 FGG--CESLVEELISLKH-LNVLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNI-YSLA-------DLKHLD 667 (806)
Q Consensus 599 ~~~--~~~~~~~l~~L~~-L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~-~~l~-------~l~~L~ 667 (806)
+++ ....+..+..+++ |+.|+++.|.+..++... ....+..+..|+...|...... ..+. .+++|+
T Consensus 360 L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~---~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIF---DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp CCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCC---CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred CCCCccccccHhhhhhcccCcEEEccCCcCcccchhh---hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 000 0011234666677 777777777765432111 1111113444444444433322 2344 556788
Q ss_pred eEeeccccCc----------cccceeeecccCCcCCCCcc-cc-------CCCcceEeeecCccchhhhcccccCccccc
Q 037138 668 KLDLIYCRNL----------EEFKKVMIDFCIKLREVTWL-VF-------APNLKSIHIANCHFMQEIISARKLGEVPEL 729 (806)
Q Consensus 668 ~L~L~~~~~~----------~~L~~L~l~~c~~l~~~~~l-~~-------l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~ 729 (806)
.|++++|... ..|+.|.++++.....+... .. +++|+.|+|++|.+ ..+|..
T Consensus 437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l----------~~lp~~ 506 (636)
T 4eco_A 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL----------TKLSDD 506 (636)
T ss_dssp EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCC----------CBCCGG
T ss_pred EEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcC----------CccChh
Confidence 8888877532 23777777776544322222 11 22788888888876 345543
Q ss_pred cCCCCcccccceeccccc------------ccccccccCC------CC-CchHHHHHccCCCCCCCCCCCCcc-------
Q 037138 730 IGNLKPFAKLQYLHLRAL------------PSLKSIYWNA------LP-SHIWKKLIMGCAGLKKLPLDSNSR------- 783 (806)
Q Consensus 730 ~~~~~~~~~L~~L~L~~~------------~~L~~l~~~~------~~-~~~L~~ll~~c~~L~~L~l~~n~~------- 783 (806)
+. ...+++|+.|+|+++ ++|+.+.... .. ...+..-+.+|++|+.|++++|.+
T Consensus 507 ~~-~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~ 585 (636)
T 4eco_A 507 FR-ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI 585 (636)
T ss_dssp GS-TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC
T ss_pred hh-hccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhH
Confidence 22 014567777777762 2233332210 00 000111145678888888888764
Q ss_pred cccceeEeeeecccC
Q 037138 784 KEHRLVNRERRQKSG 798 (806)
Q Consensus 784 ~~~l~~i~~~~~~~~ 798 (806)
...|+.+....+.+.
T Consensus 586 ~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 586 TPNISVLDIKDNPNI 600 (636)
T ss_dssp CTTCCEEECCSCTTC
T ss_pred hCcCCEEECcCCCCc
Confidence 234555555555443
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=8.9e-21 Score=210.16 Aligned_cols=282 Identities=18% Similarity=0.154 Sum_probs=133.7
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
+.+.+.++.+..+|....+++|++|++++|.++.++ +..+++|++|++++|. +..+| ++.+++|++|++++|.+
T Consensus 45 ~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L~~N~l 118 (457)
T 3bz5_A 45 TSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTNKL 118 (457)
T ss_dssp CEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECCSSCC
T ss_pred CEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEECCCCcC
Confidence 445555555555554455556666666666555543 4555566666666553 22232 55555556666655555
Q ss_pred cccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCc------cccCCc--cchHHHhcCC
Q 037138 541 RELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDS------ILFGGC--ESLVEELISL 612 (806)
Q Consensus 541 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~------~~~~~~--~~~~~~l~~L 612 (806)
+.+| ++.+++|++|++++|.+ ..+| ++.+++|++|++++|...+.+++.. ..++.. ... .+..+
T Consensus 119 ~~l~--~~~l~~L~~L~l~~N~l-~~l~---l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l--~l~~l 190 (457)
T 3bz5_A 119 TKLD--VSQNPLLTYLNCARNTL-TEID---VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL--DVSQN 190 (457)
T ss_dssp SCCC--CTTCTTCCEEECTTSCC-SCCC---CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC--CCTTC
T ss_pred Ceec--CCCCCcCCEEECCCCcc-ceec---cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee--ccccC
Confidence 5554 55555555555555552 3332 4455555555555553332211000 000000 000 13344
Q ss_pred CCCCeeeEEecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCcc--------------
Q 037138 613 KHLNVLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLE-------------- 678 (806)
Q Consensus 613 ~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-------------- 678 (806)
++|+.|+++.|.+..+ .+..+..+..|+...|..... + +..+++|+.|++++|....
T Consensus 191 ~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~l~~i-p-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l 261 (457)
T 3bz5_A 191 KLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNKLTEI-D-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHC 261 (457)
T ss_dssp TTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCSCC-C-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEEC
T ss_pred CCCCEEECcCCcCCee-------ccccCCCCCEEECcCCccccc-C-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEec
Confidence 4455555544444332 122223333333333332221 1 4445555555555543211
Q ss_pred ---ccceeeecccCCcCCCCccccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceeccccccccccccc
Q 037138 679 ---EFKKVMIDFCIKLREVTWLVFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKSIYW 755 (806)
Q Consensus 679 ---~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~~ 755 (806)
.|+.+++++|..+..++ .+.+++|+.|++++|..+ +.+|. .+++|+.|++++|++|+.+..
T Consensus 262 ~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l---------~~l~~------~~~~L~~L~l~~~~~L~~L~L 325 (457)
T 3bz5_A 262 IQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQL---------YLLDC------QAAGITELDLSQNPKLVYLYL 325 (457)
T ss_dssp TTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTC---------CEEEC------TTCCCSCCCCTTCTTCCEEEC
T ss_pred cCCCCCEEECCCCccCCccc-ccccccCCEEECCCCccc---------ceecc------CCCcceEechhhcccCCEEEC
Confidence 13444444444333332 345677777777777653 33331 124555566666666666555
Q ss_pred CCCCCchHHHHHccCCCCCCCCCCCCcc
Q 037138 756 NALPSHIWKKLIMGCAGLKKLPLDSNSR 783 (806)
Q Consensus 756 ~~~~~~~L~~ll~~c~~L~~L~l~~n~~ 783 (806)
....+..+. +.+|++|+.|++++|++
T Consensus 326 ~~N~l~~l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 326 NNTELTELD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp TTCCCSCCC--CTTCTTCSEEECCSSCC
T ss_pred CCCcccccc--cccCCcCcEEECCCCCC
Confidence 444333321 55666666666666654
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=2.1e-20 Score=198.92 Aligned_cols=231 Identities=18% Similarity=0.199 Sum_probs=165.1
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
+.+.+..+.+..+|... .+++++|++++|.++.+++..|..+++|++|++++|.+.+..|..++.+++|++|++++|.+
T Consensus 34 ~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (330)
T 1xku_A 34 RVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112 (330)
T ss_dssp TEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred eEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC
Confidence 55666667777777532 47899999999999999988899999999999999966666688999999999999999999
Q ss_pred cccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeE
Q 037138 541 RELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTI 620 (806)
Q Consensus 541 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 620 (806)
+.+|..+. ++|++|++++|. +..++...+.++++|++|++++|.+... ......+..+++|+.|++
T Consensus 113 ~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 113 KELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSS-----------GIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp SBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGG-----------GBCTTGGGGCTTCCEEEC
T ss_pred CccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCcc-----------CcChhhccCCCCcCEEEC
Confidence 99998765 799999999998 5667766689999999999999987531 011246788999999999
Q ss_pred EecchhhHHHhhhchhhccccccceeccCCCCCccc-ccccccccccceEeeccccCcc----------ccceeeecccC
Q 037138 621 ALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFN-IYSLADLKHLDKLDLIYCRNLE----------EFKKVMIDFCI 689 (806)
Q Consensus 621 ~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~----------~L~~L~l~~c~ 689 (806)
+.|.+..++. .+.. .+..|....+..... ...+..+++|+.|++++|.... .|+.|++++|.
T Consensus 179 ~~n~l~~l~~-----~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 179 ADTNITTIPQ-----GLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp CSSCCCSCCS-----SCCT--TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred CCCccccCCc-----cccc--cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence 9888765432 1122 333444444433332 3467888999999999885321 14444444443
Q ss_pred CcCCCCccccCCCcceEeeecCcc
Q 037138 690 KLREVTWLVFAPNLKSIHIANCHF 713 (806)
Q Consensus 690 ~l~~~~~l~~l~~L~~L~L~~~~~ 713 (806)
....+.++..+++|+.|++++|.+
T Consensus 252 l~~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 252 LVKVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp CSSCCTTTTTCSSCCEEECCSSCC
T ss_pred CccCChhhccCCCcCEEECCCCcC
Confidence 222223344444444444444443
No 32
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=215.65 Aligned_cols=129 Identities=22% Similarity=0.262 Sum_probs=96.7
Q ss_pred EEEeeecccccccC--CCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCC
Q 037138 461 RRISLMRNKIEKLS--DTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKT 538 (806)
Q Consensus 461 ~~ls~~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n 538 (806)
+++.+.++.+..++ ...++++|++|++++|.+..+++..|..+++|++|+|++|.+.+..|..|+++++|++|++++|
T Consensus 31 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 110 (570)
T 2z63_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (570)
T ss_dssp CEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc
Confidence 67777777777665 3467888888888888888887777888888888888888555555567888888888888888
Q ss_pred CccccCh-hhhcCCCCcEEecCCCcccc-ccccccccCCCCCcEEEeecccCCC
Q 037138 539 SIRELPK-ELKALVNLKYLNLEHSRYLH-TIPRQLICSFSMLHVLRMVNCDYSG 590 (806)
Q Consensus 539 ~l~~lp~-~i~~L~~L~~L~L~~~~~l~-~lp~~~~~~l~~L~~L~l~~~~~~~ 590 (806)
.++.+|. .++++++|++|++++|.+.. .+|.. ++++++|++|++++|.+.+
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred ccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccce
Confidence 8877765 57788888888888887433 35665 7778888888887776543
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=1.3e-20 Score=208.95 Aligned_cols=290 Identities=14% Similarity=0.113 Sum_probs=171.0
Q ss_pred CCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEE
Q 037138 477 PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYL 556 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L 556 (806)
.++++|++|++++|.++.++ .+..+++|++|++++|. +..+| ++.+++|++|++++|.++.+| ++++++|++|
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred hHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCc-CCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 45789999999999999886 38999999999999995 55555 899999999999999999886 8999999999
Q ss_pred ecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCc------cccCCcc-chHHHhcCCCCCCeeeEEecchhhHH
Q 037138 557 NLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDS------ILFGGCE-SLVEELISLKHLNVLTIALKSFFALQ 629 (806)
Q Consensus 557 ~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~------~~~~~~~-~~~~~l~~L~~L~~L~l~~~~~~~~~ 629 (806)
++++|. +..+| ++.+++|++|++++|.+.+. ++.. ..+.... .....+..+++|+.|+++.|.+..++
T Consensus 112 ~L~~N~-l~~l~---~~~l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~ 186 (457)
T 3bz5_A 112 NCDTNK-LTKLD---VSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD 186 (457)
T ss_dssp ECCSSC-CSCCC---CTTCTTCCEEECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC
T ss_pred ECCCCc-CCeec---CCCCCcCCEEECCCCcccee-ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec
Confidence 999998 45565 78999999999999988763 2110 0000000 00002334445555555544443321
Q ss_pred HhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCcc-------ccceeeecccCCcCCCCccccCCC
Q 037138 630 RFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLE-------EFKKVMIDFCIKLREVTWLVFAPN 702 (806)
Q Consensus 630 ~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~-------~L~~L~l~~c~~l~~~~~l~~l~~ 702 (806)
+..+..+..+....+..... .+..+++|+.|++++|...+ .|+.|+++++.- +..+ ...+++
T Consensus 187 -------l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l-~~~~-~~~l~~ 255 (457)
T 3bz5_A 187 -------VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPL-TELD-VSTLSK 255 (457)
T ss_dssp -------CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCC-SCCC-CTTCTT
T ss_pred -------cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcC-CCcC-HHHCCC
Confidence 11222223333333322221 24445555555555553211 134444443321 1111 222333
Q ss_pred cceEeeecCccchhhh-cccccCccccccCCCCcccccceecccccccccccccCCCCCchHHHH-HccCCCCCCCCCCC
Q 037138 703 LKSIHIANCHFMQEII-SARKLGEVPELIGNLKPFAKLQYLHLRALPSLKSIYWNALPSHIWKKL-IMGCAGLKKLPLDS 780 (806)
Q Consensus 703 L~~L~L~~~~~~~~i~-~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~l-l~~c~~L~~L~l~~ 780 (806)
|+.|++++|....--. .+...+.+| ...+++|+.|++++|+.+..++. ..+.++.+ +.+|++|+.|++++
T Consensus 256 L~~L~l~~n~L~~L~l~~n~~~~~~~-----~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~~~L~~L~L~~ 327 (457)
T 3bz5_A 256 LTTLHCIQTDLLEIDLTHNTQLIYFQ-----AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQNPKLVYLYLNN 327 (457)
T ss_dssp CCEEECTTCCCSCCCCTTCTTCCEEE-----CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTCTTCCEEECTT
T ss_pred CCEEeccCCCCCEEECCCCccCCccc-----ccccccCCEEECCCCcccceecc---CCCcceEechhhcccCCEEECCC
Confidence 3333332222100000 000012222 23457888888888888777764 33556666 88889999999888
Q ss_pred Cccc-------ccceeEeeeeccc
Q 037138 781 NSRK-------EHRLVNRERRQKS 797 (806)
Q Consensus 781 n~~~-------~~l~~i~~~~~~~ 797 (806)
|.+. ..|+.+....+..
T Consensus 328 N~l~~l~l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 328 TELTELDVSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp CCCSCCCCTTCTTCSEEECCSSCC
T ss_pred CcccccccccCCcCcEEECCCCCC
Confidence 8743 3445555444443
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=2.8e-20 Score=213.13 Aligned_cols=125 Identities=16% Similarity=0.272 Sum_probs=105.4
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
+.+.+.++.+..+|... .++|++|++++|.+..+++..|..+++|++|+|++|.+.+..|..|+++++|++|+|++|.+
T Consensus 34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp CEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC
Confidence 57788888888887643 38899999999999999888899999999999999966666688899999999999999999
Q ss_pred cccChhhhcCCCCcEEecCCCccccccc--cccccCCCCCcEEEeecccCCC
Q 037138 541 RELPKELKALVNLKYLNLEHSRYLHTIP--RQLICSFSMLHVLRMVNCDYSG 590 (806)
Q Consensus 541 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~~~~~l~~L~~L~l~~~~~~~ 590 (806)
+.+|.. .+++|++|++++|.+ ..+| .. ++++++|++|++++|.+..
T Consensus 113 ~~lp~~--~l~~L~~L~Ls~N~l-~~l~~p~~-~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 113 QNISCC--PMASLRHLDLSFNDF-DVLPVCKE-FGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CEECSC--CCTTCSEEECCSSCC-SBCCCCGG-GGGCTTCCEEEEECSBCCT
T ss_pred CccCcc--ccccCCEEECCCCCc-cccCchHh-hcccCcccEEecCCCcccc
Confidence 999877 899999999999984 4443 44 8899999999999988764
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=2.8e-20 Score=218.63 Aligned_cols=149 Identities=19% Similarity=0.180 Sum_probs=98.5
Q ss_pred EeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccc
Q 037138 463 ISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRE 542 (806)
Q Consensus 463 ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~ 542 (806)
+...++.+..+|... .+++++|++++|.++.+++..|..+++|++|+|++|.+.+..|..++++++|++|+|++|.++.
T Consensus 9 ~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 87 (680)
T 1ziw_A 9 ADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 87 (680)
T ss_dssp EECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC
T ss_pred eECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc
Confidence 344445555565432 2577777777777777777667777777777777775555556667777777777777777777
Q ss_pred cCh-hhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEE
Q 037138 543 LPK-ELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIA 621 (806)
Q Consensus 543 lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 621 (806)
+|. .++++++|++|++++|. +..+|+..++++++|++|++++|.+.+..+ ..+..+++|+.|+++
T Consensus 88 l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-------------~~~~~l~~L~~L~L~ 153 (680)
T 1ziw_A 88 LSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKL-------------GTQVQLENLQELLLS 153 (680)
T ss_dssp CCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCC-------------CSSSCCTTCCEEECC
T ss_pred cChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCc-------------hhhcccccCCEEEcc
Confidence 765 47777777777777776 345554446777777777777776665433 234556666666666
Q ss_pred ecchh
Q 037138 622 LKSFF 626 (806)
Q Consensus 622 ~~~~~ 626 (806)
.|.+.
T Consensus 154 ~n~l~ 158 (680)
T 1ziw_A 154 NNKIQ 158 (680)
T ss_dssp SSCCC
T ss_pred CCccc
Confidence 65543
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.83 E-value=4.3e-20 Score=206.31 Aligned_cols=120 Identities=23% Similarity=0.399 Sum_probs=86.3
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
+.+.+.++.+..++...++++|+.|++++|.+..+++ +..+++|++|++++| .+..+|. +..+++|++|++++|.+
T Consensus 71 ~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~l 146 (466)
T 1o6v_A 71 TQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDIDP-LKNLTNLNRLELSSNTI 146 (466)
T ss_dssp CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEEEE
T ss_pred CEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCCCChH-HcCCCCCCEEECCCCcc
Confidence 7788888888877767788899999999988887776 888899999999988 4455554 88888999999988888
Q ss_pred cccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCC
Q 037138 541 RELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYS 589 (806)
Q Consensus 541 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 589 (806)
..+|. ++.+++|++|+++++ ...++. +.++++|++|++++|.+.
T Consensus 147 ~~~~~-~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 147 SDISA-LSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKVS 190 (466)
T ss_dssp CCCGG-GTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCChh-hccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcCC
Confidence 77663 666666666666422 233332 555566666666555544
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=3.3e-20 Score=222.50 Aligned_cols=133 Identities=18% Similarity=0.177 Sum_probs=112.9
Q ss_pred EEEeeecccccccC--CCCCCCcccccccccc-chhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecC
Q 037138 461 RRISLMRNKIEKLS--DTPTCPHLLSLFPNIN-RLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSK 537 (806)
Q Consensus 461 ~~ls~~~~~~~~~~--~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~ 537 (806)
+.+.+..|.+..+. ...++++|++|++++| .+..+++..|.++++|++|+|++|.+.+..|..|+++++|++|+|++
T Consensus 27 ~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 106 (844)
T 3j0a_A 27 ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106 (844)
T ss_dssp CEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTT
T ss_pred CEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcC
Confidence 78889999888764 3488999999999999 45567677899999999999999977777799999999999999999
Q ss_pred CCccc-cChh--hhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCC
Q 037138 538 TSIRE-LPKE--LKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIP 593 (806)
Q Consensus 538 n~l~~-lp~~--i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 593 (806)
|.++. +|.. ++++++|++|++++|.+.+..|...++++++|++|++++|.+.+..+
T Consensus 107 n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred CCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 99984 5665 89999999999999986554443448999999999999998876543
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=3.4e-20 Score=208.13 Aligned_cols=153 Identities=25% Similarity=0.325 Sum_probs=122.1
Q ss_pred EEEeeecccccccC--CCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccC-cccCCCCCCCEEEecC
Q 037138 461 RRISLMRNKIEKLS--DTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLR-PGISKLVSLQYLNLSK 537 (806)
Q Consensus 461 ~~ls~~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~l~~L~~L~Ls~ 537 (806)
+.+.+.+|.+..++ ...++++|++|++++|.+..+.+..|..+++|++|+|++|. +..+| ..+.++++|++|+|++
T Consensus 35 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~ 113 (477)
T 2id5_A 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISE 113 (477)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTT
T ss_pred cEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCC
Confidence 67888888888774 34788999999999999988888889999999999999995 44555 4578899999999999
Q ss_pred CCcccc-ChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCC
Q 037138 538 TSIREL-PKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLN 616 (806)
Q Consensus 538 n~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 616 (806)
|.+..+ |..+..+++|++|++++|.+ ..++...+..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus 114 n~i~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~l~~l~~L~ 179 (477)
T 2id5_A 114 NKIVILLDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLTSIPT-------------EALSHLHGLI 179 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEEECCTTC-CEECTTSSTTCTTCCEEEEESCCCSSCCH-------------HHHTTCTTCC
T ss_pred CccccCChhHccccccCCEEECCCCcc-ceeChhhccCCCCCCEEECCCCcCcccCh-------------hHhcccCCCc
Confidence 998855 56788999999999999984 44544448899999999999998775422 4577778888
Q ss_pred eeeEEecchhhH
Q 037138 617 VLTIALKSFFAL 628 (806)
Q Consensus 617 ~L~l~~~~~~~~ 628 (806)
.|+++.|.+..+
T Consensus 180 ~L~l~~n~i~~~ 191 (477)
T 2id5_A 180 VLRLRHLNINAI 191 (477)
T ss_dssp EEEEESCCCCEE
T ss_pred EEeCCCCcCcEe
Confidence 888887766543
No 39
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=5.2e-20 Score=213.25 Aligned_cols=153 Identities=21% Similarity=0.210 Sum_probs=99.0
Q ss_pred EEEeeeccccccc--CCCCCCCccccccccccchhcchhHhhccCCccc--EEEccCCCccccc----------------
Q 037138 461 RRISLMRNKIEKL--SDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLT--VLNLSNNGFLTKL---------------- 520 (806)
Q Consensus 461 ~~ls~~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~--~L~Ls~~~~~~~l---------------- 520 (806)
+.+.+.+|.+..+ +....+++|++|++++|.+..+++..|..+++|+ .|++++|.+.+..
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 211 (606)
T 3t6q_A 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211 (606)
T ss_dssp CEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTT
T ss_pred cEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCC
Confidence 6677777777665 4445577888888888877777666677777766 6666666433222
Q ss_pred -----------------------------------------------------------CcccCCCCCCCEEEecCCCcc
Q 037138 521 -----------------------------------------------------------RPGISKLVSLQYLNLSKTSIR 541 (806)
Q Consensus 521 -----------------------------------------------------------p~~i~~l~~L~~L~Ls~n~l~ 541 (806)
|..++.+++|++|++++|.++
T Consensus 212 ~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 291 (606)
T 3t6q_A 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291 (606)
T ss_dssp CSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS
T ss_pred chhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC
Confidence 223566677777777777777
Q ss_pred ccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEE
Q 037138 542 ELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIA 621 (806)
Q Consensus 542 ~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 621 (806)
.+|..+..+++|++|++++|.+ ..+++..+..+++|++|++++|.+.+.++. ..+..+++|+.|+++
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~------------~~~~~l~~L~~L~l~ 358 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKF-ENLCQISASNFPSLTHLSIKGNTKRLELGT------------GCLENLENLRELDLS 358 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCC-SBGGGGCGGGCTTCSEEECCSCSSCCBCCS------------STTTTCTTCCEEECC
T ss_pred CCChhhcccccCCEEECccCCc-CcCchhhhhccCcCCEEECCCCCcccccch------------hhhhccCcCCEEECC
Confidence 7777777777777777777764 344333367777777777777766544331 124455556666655
Q ss_pred ecchh
Q 037138 622 LKSFF 626 (806)
Q Consensus 622 ~~~~~ 626 (806)
.|.+.
T Consensus 359 ~n~l~ 363 (606)
T 3t6q_A 359 HDDIE 363 (606)
T ss_dssp SSCCC
T ss_pred CCccc
Confidence 55543
No 40
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=5.8e-21 Score=221.28 Aligned_cols=217 Identities=13% Similarity=0.179 Sum_probs=107.1
Q ss_pred CCCccccccccccchhcchhHhhccCCcccEEEccCCC-ccc-ccCcccCCC------CCCCEEEecCCCccccCh--hh
Q 037138 478 TCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNG-FLT-KLRPGISKL------VSLQYLNLSKTSIRELPK--EL 547 (806)
Q Consensus 478 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~-~~~-~lp~~i~~l------~~L~~L~Ls~n~l~~lp~--~i 547 (806)
++++|++|++++|.+....+..|..+++|++|++++|. +.+ .+|..++.+ ++|++|++++|.++.+|. .+
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l 326 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh
Confidence 45556666665555444333445555555555555554 333 455555444 555555555555555555 55
Q ss_pred hcCCCCcEEecCCCccccccc----------------------cccccCCCC-CcEEEeecccCCCCCCCCccccCCccc
Q 037138 548 KALVNLKYLNLEHSRYLHTIP----------------------RQLICSFSM-LHVLRMVNCDYSGKIPLDSILFGGCES 604 (806)
Q Consensus 548 ~~L~~L~~L~L~~~~~l~~lp----------------------~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~ 604 (806)
+++++|++|++++|.+.+.+| .. +..+++ |++|++++|.+. .+|
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N~l~-~lp----------- 393 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN-FCGFTEQVENLSFAHNKLK-YIP----------- 393 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTT-SEEECTTCCEEECCSSCCS-SCC-----------
T ss_pred ccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHh-hhhhcccCcEEEccCCcCc-ccc-----------
Confidence 555555555555555433454 33 444444 555555554444 222
Q ss_pred hHHHhcC--CCCCCeeeEEecchhhHHHhhhchhhc-------cccccceeccCCCCCccccc-ccccccccceEeeccc
Q 037138 605 LVEELIS--LKHLNVLTIALKSFFALQRFLSSHELQ-------NCTKSLNLRYYDDSKSFNIY-SLADLKHLDKLDLIYC 674 (806)
Q Consensus 605 ~~~~l~~--L~~L~~L~l~~~~~~~~~~~~~~~~l~-------~~~~~l~L~~~~~~~~~~~~-~l~~l~~L~~L~L~~~ 674 (806)
..+.. +++|+.|+++.|.+.+.. +..+. .+..+..|....|....... .+..+++|+.|+|++|
T Consensus 394 --~~~~~~~l~~L~~L~Ls~N~l~~~~----p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 394 --NIFDAKSVSVMSAIDFSYNEIGSVD----GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp --SCCCTTCSSCEEEEECCSSCTTTTT----TCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS
T ss_pred --hhhhhcccCccCEEECcCCcCCCcc----hhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC
Confidence 12222 236777777766664321 11111 22233344444443332111 2334566666666665
Q ss_pred cCcc-----------------ccceeeecccCCcCCCCccc--cCCCcceEeeecCcc
Q 037138 675 RNLE-----------------EFKKVMIDFCIKLREVTWLV--FAPNLKSIHIANCHF 713 (806)
Q Consensus 675 ~~~~-----------------~L~~L~l~~c~~l~~~~~l~--~l~~L~~L~L~~~~~ 713 (806)
.... .|+.|+++++.....+..+. .+++|+.|+|++|.+
T Consensus 468 ~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l 525 (636)
T 4eco_A 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF 525 (636)
T ss_dssp CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCC
T ss_pred CCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCC
Confidence 4210 35556666554333333443 566666666666665
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=5e-20 Score=216.41 Aligned_cols=130 Identities=23% Similarity=0.273 Sum_probs=108.8
Q ss_pred EEEEeeecccccccCC--CCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCc-ccCCCCCCCEEEec
Q 037138 460 RRRISLMRNKIEKLSD--TPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRP-GISKLVSLQYLNLS 536 (806)
Q Consensus 460 ~~~ls~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~l~~L~~L~Ls 536 (806)
++++.+.++.+..++. ..++++|++|++++|.+..+++..|..+++|++|+|++|. +..+|. .|+++++|++|+++
T Consensus 27 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~ 105 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLM 105 (680)
T ss_dssp CSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECC
T ss_pred CcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEECC
Confidence 3778888888887764 4778999999999999999888889999999999999994 445554 69999999999999
Q ss_pred CCCccccC-hhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCC
Q 037138 537 KTSIRELP-KELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGK 591 (806)
Q Consensus 537 ~n~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~ 591 (806)
+|.++.+| ..++++++|++|++++|.+.+..|. .++++++|++|++++|.+.+.
T Consensus 106 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp SSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCB
T ss_pred CCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCccccc
Confidence 99999776 5789999999999999985444444 488999999999999887654
No 42
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=6.9e-20 Score=208.03 Aligned_cols=121 Identities=24% Similarity=0.298 Sum_probs=105.3
Q ss_pred EEEeeecccccccCC--CCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCC
Q 037138 461 RRISLMRNKIEKLSD--TPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKT 538 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n 538 (806)
+++.+.++.+..++. ..++++|++|++++|.++.+++..|..+++|++|+|++| .+..+|.. .+++|++|++++|
T Consensus 24 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L~~N 100 (520)
T 2z7x_B 24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLDLSFN 100 (520)
T ss_dssp SEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEECCSS
T ss_pred cEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEeccCC
Confidence 778899998887753 478999999999999999998888999999999999999 45578876 8999999999999
Q ss_pred Cccc--cChhhhcCCCCcEEecCCCccccccccccccCCCCC--cEEEeecccC
Q 037138 539 SIRE--LPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSML--HVLRMVNCDY 588 (806)
Q Consensus 539 ~l~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L--~~L~l~~~~~ 588 (806)
.++. +|..++++++|++|++++|.+.. . .+..+++| ++|++++|.+
T Consensus 101 ~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~-~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 101 AFDALPICKEFGNMSQLKFLGLSTTHLEK---S-SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCSSCCCCGGGGGCTTCCEEEEEESSCCG---G-GGGGGTTSCEEEEEEEECTT
T ss_pred ccccccchhhhccCCcceEEEecCcccch---h-hccccccceeeEEEeecccc
Confidence 9985 67899999999999999998533 1 26777888 9999999988
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=2.7e-20 Score=200.06 Aligned_cols=255 Identities=20% Similarity=0.193 Sum_probs=172.5
Q ss_pred EeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccc
Q 037138 463 ISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRE 542 (806)
Q Consensus 463 ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~ 542 (806)
....++.++.+|.. -.++|++|++++|.++.++...|..+++|++|++++|.+.+..|..++++++|++|++++|.++.
T Consensus 36 c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (353)
T 2z80_A 36 CKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN 114 (353)
T ss_dssp EECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred eeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc
Confidence 34556677777753 23689999999999999988789999999999999996666667789999999999999999999
Q ss_pred cChh-hhcCCCCcEEecCCCcccccccc-ccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeE
Q 037138 543 LPKE-LKALVNLKYLNLEHSRYLHTIPR-QLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTI 620 (806)
Q Consensus 543 lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 620 (806)
+|.. ++++++|++|++++|. +..+|. ..+..+++|++|++++|.....++ ...+..+++|+.|++
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~------------~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQ------------RKDFAGLTFLEELEI 181 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEEC------------TTTTTTCCEEEEEEE
T ss_pred CCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccC------------HHHccCCCCCCEEEC
Confidence 8876 8899999999999997 567776 558899999999999985333222 135778889999999
Q ss_pred EecchhhHHHhhhchhhccccccceeccCCCCCccccc-ccccccccceEeeccccCccc-------------cceeeec
Q 037138 621 ALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIY-SLADLKHLDKLDLIYCRNLEE-------------FKKVMID 686 (806)
Q Consensus 621 ~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~-------------L~~L~l~ 686 (806)
+.|.+.... +..+..+.++..|....+....... .+..+++|+.|++++|..... ++.+.+.
T Consensus 182 ~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 182 DASDLQSYE----PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp EETTCCEEC----TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred CCCCcCccC----HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence 988775432 2233344444445444443322211 234577888888888754321 2333333
Q ss_pred ccCCc-----CCCCccccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceeccccc
Q 037138 687 FCIKL-----REVTWLVFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRAL 747 (806)
Q Consensus 687 ~c~~l-----~~~~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~ 747 (806)
++.-. ..+.++..+++|+.|+|++|.+ ..+|.. .+..+++|++|+|+++
T Consensus 258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l----------~~i~~~--~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQL----------KSVPDG--IFDRLTSLQKIWLHTN 311 (353)
T ss_dssp SCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC----------CCCCTT--TTTTCTTCCEEECCSS
T ss_pred cccccCcchhhhHHHHhcccCCCEEECCCCCC----------CccCHH--HHhcCCCCCEEEeeCC
Confidence 22110 0122345566677777776665 344431 1244566677776663
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=9e-20 Score=193.21 Aligned_cols=234 Identities=20% Similarity=0.260 Sum_probs=171.2
Q ss_pred cCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEE
Q 037138 502 FMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVL 581 (806)
Q Consensus 502 ~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L 581 (806)
...++++|+|++| .+..+|..++.+++|++|+|++|.++.+|..++++++|++|++++|.+ ..+|.. ++++++|++|
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~-l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL-RALPAS-IASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCC-CCCCGG-GGGCTTCCEE
T ss_pred cccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcc-ccCcHH-HhcCcCCCEE
Confidence 4688999999999 566899999999999999999999999999999999999999999984 588987 8999999999
Q ss_pred EeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhchhhccccccceeccCCCCCcccccccc
Q 037138 582 RMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLA 661 (806)
Q Consensus 582 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~ 661 (806)
++++|...+.+|..-.. ......+..+++|+.|+++.|.+..++ ..+.
T Consensus 156 ~L~~n~~~~~~p~~~~~----~~~~~~~~~l~~L~~L~L~~n~l~~lp----------------------------~~l~ 203 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS----TDASGEHQGLVNLQSLRLEWTGIRSLP----------------------------ASIA 203 (328)
T ss_dssp EEEEETTCCCCCSCSEE----EC-CCCEEESTTCCEEEEEEECCCCCC----------------------------GGGG
T ss_pred ECCCCCCccccChhHhh----ccchhhhccCCCCCEEECcCCCcCcch----------------------------Hhhc
Confidence 99999988877622110 001123556899999999987654221 1466
Q ss_pred cccccceEeeccccCccccceeeecccCCcCCCCccccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccce
Q 037138 662 DLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQY 741 (806)
Q Consensus 662 ~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~ 741 (806)
.+++|++|+|++|... ..++.+..+++|+.|+|++|... +.+|. .+..+++|++
T Consensus 204 ~l~~L~~L~L~~N~l~--------------~l~~~l~~l~~L~~L~Ls~n~~~---------~~~p~---~~~~l~~L~~ 257 (328)
T 4fcg_A 204 NLQNLKSLKIRNSPLS--------------ALGPAIHHLPKLEELDLRGCTAL---------RNYPP---IFGGRAPLKR 257 (328)
T ss_dssp GCTTCCEEEEESSCCC--------------CCCGGGGGCTTCCEEECTTCTTC---------CBCCC---CTTCCCCCCE
T ss_pred CCCCCCEEEccCCCCC--------------cCchhhccCCCCCEEECcCCcch---------hhhHH---HhcCCCCCCE
Confidence 7889999999998522 12346778999999999999883 56664 4556789999
Q ss_pred ecccccccccccccCCCCCchHHHH-HccCCCCCCCCCCCCcccccceeEeeeeccc
Q 037138 742 LHLRALPSLKSIYWNALPSHIWKKL-IMGCAGLKKLPLDSNSRKEHRLVNRERRQKS 797 (806)
Q Consensus 742 L~L~~~~~L~~l~~~~~~~~~L~~l-l~~c~~L~~L~l~~n~~~~~l~~i~~~~~~~ 797 (806)
|+|++|..+..++.....++.|+.+ +.+|+.+..+|-.... ...++.+.......
T Consensus 258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~-L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG-SCTTCEEECCGGGS
T ss_pred EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh-ccCceEEeCCHHHH
Confidence 9999998887776543334444444 4444444444433222 33444554444433
No 45
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=2.9e-19 Score=204.38 Aligned_cols=125 Identities=20% Similarity=0.255 Sum_probs=98.0
Q ss_pred EEEeeecccccccCC--CCCCCccccccccccchhcchhHhhccCCcccEEEccCCCccc-ccCcccCCCCCCCEEEecC
Q 037138 461 RRISLMRNKIEKLSD--TPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLT-KLRPGISKLVSLQYLNLSK 537 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~-~lp~~i~~l~~L~~L~Ls~ 537 (806)
+.+.+.+|.+..++. ...+++|++|++++|.+..+++..|..+++|++|++++|.+.+ ..|..++++++|++|++++
T Consensus 53 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~ 132 (549)
T 2z81_A 53 QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132 (549)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEE
T ss_pred cEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCC
Confidence 778888888887653 4788999999999999999998889999999999999995544 3567889999999999999
Q ss_pred CC-ccccC-hhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecc
Q 037138 538 TS-IRELP-KELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNC 586 (806)
Q Consensus 538 n~-l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~ 586 (806)
|. +..+| ..++++++|++|++++|.+.+..|.. ++.+++|++|++++|
T Consensus 133 n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLS 182 (549)
T ss_dssp SSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECS
T ss_pred CccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccC
Confidence 97 66776 47888999999999988865555554 555544444444433
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=3.8e-19 Score=204.45 Aligned_cols=147 Identities=22% Similarity=0.231 Sum_probs=122.8
Q ss_pred ecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccC-
Q 037138 466 MRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELP- 544 (806)
Q Consensus 466 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp- 544 (806)
....+..+|.. -.+++++|++++|.++.+++..|..+++|++|+|++|.+.+..|..|+++++|++|+|++|.++.+|
T Consensus 15 ~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (570)
T 2z63_A 15 MELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (570)
T ss_dssp CSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH
Confidence 34455666653 2368999999999999998888999999999999999666555678999999999999999999776
Q ss_pred hhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCC-CCCCCccccCCccchHHHhcCCCCCCeeeEEec
Q 037138 545 KELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSG-KIPLDSILFGGCESLVEELISLKHLNVLTIALK 623 (806)
Q Consensus 545 ~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 623 (806)
..++++++|++|++++|. +..+|...++++++|++|++++|.+.+ .+| ..+..+++|+.|+++.|
T Consensus 94 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp-------------~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLP-------------EYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCC-------------GGGGGCTTCCEEECTTS
T ss_pred hhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecCh-------------hhhcccCCCCEEeCcCC
Confidence 679999999999999998 567776458999999999999998875 234 56888999999999887
Q ss_pred chhh
Q 037138 624 SFFA 627 (806)
Q Consensus 624 ~~~~ 627 (806)
.+..
T Consensus 160 ~l~~ 163 (570)
T 2z63_A 160 KIQS 163 (570)
T ss_dssp CCCE
T ss_pred ccce
Confidence 7644
No 47
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=5.1e-19 Score=202.63 Aligned_cols=121 Identities=26% Similarity=0.396 Sum_probs=104.8
Q ss_pred EEEeeecccccccC--CCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCC
Q 037138 461 RRISLMRNKIEKLS--DTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKT 538 (806)
Q Consensus 461 ~~ls~~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n 538 (806)
+.+.+.+|.+..++ ...++++|++|++++|.++.+++..|..+++|++|+|++| .+..+|.. .+++|++|++++|
T Consensus 55 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~Ls~N 131 (562)
T 3a79_B 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRHLDLSFN 131 (562)
T ss_dssp CEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSEEECCSS
T ss_pred CEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCEEECCCC
Confidence 78899999998876 4588999999999999999998888999999999999999 45678877 8999999999999
Q ss_pred CccccC--hhhhcCCCCcEEecCCCccccccccccccCCCCC--cEEEeecccC
Q 037138 539 SIRELP--KELKALVNLKYLNLEHSRYLHTIPRQLICSFSML--HVLRMVNCDY 588 (806)
Q Consensus 539 ~l~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L--~~L~l~~~~~ 588 (806)
.++.+| ..++++++|++|++++|.+.. .+ +..+++| ++|++++|.+
T Consensus 132 ~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 132 DFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEEEESSC
T ss_pred CccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEeecccc
Confidence 999764 789999999999999998533 22 4555666 9999999988
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=3.2e-19 Score=198.35 Aligned_cols=241 Identities=18% Similarity=0.172 Sum_probs=178.8
Q ss_pred EEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCcc
Q 037138 462 RISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIR 541 (806)
Q Consensus 462 ~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~ 541 (806)
.+...+..+..+|.. -.++++.|++++|.++.+++..|..+++|++|+|++|.+.+..|..|.++++|++|+|++|.++
T Consensus 58 ~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136 (452)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC
Confidence 345555666677643 2368999999999999998888999999999999999666666788999999999999999999
Q ss_pred ccChh-hhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeE
Q 037138 542 ELPKE-LKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTI 620 (806)
Q Consensus 542 ~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 620 (806)
.+|.. +..+++|++|++++|. +..+|...+.++++|++|++++|...+.++. ..+..+++|+.|++
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~------------~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISE------------GAFEGLFNLKYLNL 203 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECT------------TTTTTCTTCCEEEC
T ss_pred ccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccCh------------hhccCCCCCCEEEC
Confidence 88765 7889999999999998 5677776789999999999998766554331 25778899999999
Q ss_pred EecchhhHHHhhhchhhccccccceeccCCCCCccc-ccccccccccceEeeccccCccccceeeecccCCcCCCCcccc
Q 037138 621 ALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFN-IYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVF 699 (806)
Q Consensus 621 ~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~ 699 (806)
+.|.+..++ .+..+..+..|+...|..... ...+..+++|+.|+|++|.... + .+..+..
T Consensus 204 ~~n~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~---------~~~~~~~ 264 (452)
T 3zyi_A 204 GMCNIKDMP------NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL----I---------ERNAFDG 264 (452)
T ss_dssp TTSCCSSCC------CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE----E---------CTTTTTT
T ss_pred CCCcccccc------cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce----E---------CHHHhcC
Confidence 988776543 233344455555555544333 2357777888888888775211 1 1234667
Q ss_pred CCCcceEeeecCccchhhhcccccCccccccCCCCcccccceeccccc
Q 037138 700 APNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRAL 747 (806)
Q Consensus 700 l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~ 747 (806)
+++|+.|+|++|.+ ..+|. ..+..+++|+.|+|++.
T Consensus 265 l~~L~~L~L~~N~l----------~~~~~--~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 265 LASLVELNLAHNNL----------SSLPH--DLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CTTCCEEECCSSCC----------SCCCT--TSSTTCTTCCEEECCSS
T ss_pred CCCCCEEECCCCcC----------CccCh--HHhccccCCCEEEccCC
Confidence 88999999999977 34443 23455678999999874
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=4.6e-19 Score=196.41 Aligned_cols=241 Identities=21% Similarity=0.236 Sum_probs=176.4
Q ss_pred EEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCcc
Q 037138 462 RISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIR 541 (806)
Q Consensus 462 ~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~ 541 (806)
.+......+..+|... .++++.|++++|.+..+++..|..+++|++|+|++|.+.+..|..|.++++|++|+|++|.++
T Consensus 47 ~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 47 KVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125 (440)
T ss_dssp EEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred EEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC
Confidence 4455556677776532 378899999999999988888999999999999999665556678899999999999999999
Q ss_pred ccCh-hhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeE
Q 037138 542 ELPK-ELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTI 620 (806)
Q Consensus 542 ~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 620 (806)
.+|. .+..+++|++|++++|. +..+|...+.++++|++|++++|...+.++. ..+..+++|+.|++
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~------------~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 126 TIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISE------------GAFEGLSNLRYLNL 192 (440)
T ss_dssp SCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECT------------TTTTTCSSCCEEEC
T ss_pred eeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCc------------chhhcccccCeecC
Confidence 8876 58899999999999998 5677776688999999999998765544331 35778889999999
Q ss_pred EecchhhHHHhhhchhhccccccceeccCCCCCccc-ccccccccccceEeeccccCccccceeeecccCCcCCCCcccc
Q 037138 621 ALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFN-IYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVF 699 (806)
Q Consensus 621 ~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~ 699 (806)
+.|.+..++ .+..+.++..|+...|..... ...+..+++|+.|+|++|... .+ .+..+..
T Consensus 193 ~~n~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~----~~---------~~~~~~~ 253 (440)
T 3zyj_A 193 AMCNLREIP------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ----VI---------ERNAFDN 253 (440)
T ss_dssp TTSCCSSCC------CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC----EE---------CTTSSTT
T ss_pred CCCcCcccc------ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee----EE---------ChhhhcC
Confidence 888776543 233344455555555543332 236777888888888877521 11 1234567
Q ss_pred CCCcceEeeecCccchhhhcccccCccccccCCCCcccccceeccccc
Q 037138 700 APNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRAL 747 (806)
Q Consensus 700 l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~ 747 (806)
+++|+.|+|++|.+ ..+|. ..+..+++|+.|+|++.
T Consensus 254 l~~L~~L~L~~N~l----------~~~~~--~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 254 LQSLVEINLAHNNL----------TLLPH--DLFTPLHHLERIHLHHN 289 (440)
T ss_dssp CTTCCEEECTTSCC----------CCCCT--TTTSSCTTCCEEECCSS
T ss_pred CCCCCEEECCCCCC----------CccCh--hHhccccCCCEEEcCCC
Confidence 88899999999877 34443 23455678899998873
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=5e-19 Score=186.11 Aligned_cols=243 Identities=20% Similarity=0.206 Sum_probs=170.1
Q ss_pred EEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCccc--ccCcccCCCCCCCEEEecCCC
Q 037138 462 RISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLT--KLRPGISKLVSLQYLNLSKTS 539 (806)
Q Consensus 462 ~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~--~lp~~i~~l~~L~~L~Ls~n~ 539 (806)
.+....+.+..+|.. -.++|+.|++++|.++.++...|..+++|++|++++|.+.. ..|..+..+++|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 455666677777753 34789999999999999999889999999999999995432 236677789999999999999
Q ss_pred ccccChhhhcCCCCcEEecCCCcccccccc-ccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCee
Q 037138 540 IRELPKELKALVNLKYLNLEHSRYLHTIPR-QLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVL 618 (806)
Q Consensus 540 l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 618 (806)
+..+|..+..+++|++|++++|. +..+|. ..+..+++|++|++++|.+.+..+ ..+..+++|+.|
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~~~~l~~L~~L 155 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-------------GIFNGLSSLEVL 155 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECST-------------TTTTTCTTCCEE
T ss_pred cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccch-------------hhcccCcCCCEE
Confidence 99999999999999999999998 455554 448899999999999998775543 357788999999
Q ss_pred eEEecchhhHHHhhhchhhccccccceeccCCCCCccc-ccccccccccceEeeccccCccccceeeecccCCcCCCCcc
Q 037138 619 TIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFN-IYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWL 697 (806)
Q Consensus 619 ~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l 697 (806)
+++.|.+... ..+..+..+..+..|+...+..... ...+..+++|+.|++++|.... + ....+
T Consensus 156 ~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------~-~~~~~ 219 (306)
T 2z66_A 156 KMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS------------L-DTFPY 219 (306)
T ss_dssp ECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB------------C-CSGGG
T ss_pred ECCCCccccc---cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc------------c-Chhhc
Confidence 9988876531 0112223333444444444433322 2345566666666666664211 0 01135
Q ss_pred ccCCCcceEeeecCccchhhhcccccCccccccCCCCccc-ccceeccccc
Q 037138 698 VFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFA-KLQYLHLRAL 747 (806)
Q Consensus 698 ~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~-~L~~L~L~~~ 747 (806)
..+++|+.|+|++|.+. +..|. .+..+| +|++|+|+++
T Consensus 220 ~~l~~L~~L~L~~N~l~---------~~~~~---~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIM---------TSKKQ---ELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp TTCTTCCEEECTTSCCC---------BCSSS---SCCCCCTTCCEEECTTC
T ss_pred cCcccCCEeECCCCCCc---------ccCHH---HHHhhhccCCEEEccCC
Confidence 56788888888888762 23332 333443 7888888763
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.78 E-value=1.3e-18 Score=202.78 Aligned_cols=130 Identities=22% Similarity=0.259 Sum_probs=109.3
Q ss_pred EEEEeeecccccccCC--CCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecC
Q 037138 460 RRRISLMRNKIEKLSD--TPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSK 537 (806)
Q Consensus 460 ~~~ls~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~ 537 (806)
++.+.+.+|.++.++. +.++++|++|++++|.++.+++..|.++++|++|+|++|++.+..|..|.++++|++|+|++
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~ 133 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTT
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCC
Confidence 3788999999998864 47899999999999999999998899999999999999954443445689999999999999
Q ss_pred CCccccCh-hhhcCCCCcEEecCCCcccc-ccccccccCCCCCcEEEeecccCCC
Q 037138 538 TSIRELPK-ELKALVNLKYLNLEHSRYLH-TIPRQLICSFSMLHVLRMVNCDYSG 590 (806)
Q Consensus 538 n~l~~lp~-~i~~L~~L~~L~L~~~~~l~-~lp~~~~~~l~~L~~L~l~~~~~~~ 590 (806)
|.++.+|. .+++|++|++|++++|.+.. .+|.. ++.+++|++|++++|.+.+
T Consensus 134 N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 134 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred CcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCccccc
Confidence 99998876 48999999999999998533 34554 7889999999999987754
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=4.6e-18 Score=180.74 Aligned_cols=261 Identities=20% Similarity=0.212 Sum_probs=180.5
Q ss_pred ccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCcccc-ChhhhcCCCCcEEecC
Q 037138 481 HLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIREL-PKELKALVNLKYLNLE 559 (806)
Q Consensus 481 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~L~ 559 (806)
+++.++++++.++.+|... .+.|++|++++|.+.+..+..++++++|++|++++|.++.+ |..++.+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 7899999999888887643 36899999999965555555899999999999999999977 7889999999999999
Q ss_pred CCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhchhhcc
Q 037138 560 HSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSHELQN 639 (806)
Q Consensus 560 ~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~ 639 (806)
+|. +..+|... .++|++|++++|.+.+.. ...+..+++|+.|+++.|.+..... ....+..
T Consensus 109 ~n~-l~~l~~~~---~~~L~~L~l~~n~l~~~~-------------~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~ 169 (330)
T 1xku_A 109 KNQ-LKELPEKM---PKTLQELRVHENEITKVR-------------KSVFNGLNQMIVVELGTNPLKSSGI--ENGAFQG 169 (330)
T ss_dssp SSC-CSBCCSSC---CTTCCEEECCSSCCCBBC-------------HHHHTTCTTCCEEECCSSCCCGGGB--CTTGGGG
T ss_pred CCc-CCccChhh---cccccEEECCCCcccccC-------------HhHhcCCccccEEECCCCcCCccCc--ChhhccC
Confidence 998 57888763 279999999999887542 2568899999999999887754221 1223444
Q ss_pred ccccceeccCCCCCcccccccccccccceEeeccccCcc----------ccceeeecccCCcCCCC-ccccCCCcceEee
Q 037138 640 CTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLE----------EFKKVMIDFCIKLREVT-WLVFAPNLKSIHI 708 (806)
Q Consensus 640 ~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~----------~L~~L~l~~c~~l~~~~-~l~~l~~L~~L~L 708 (806)
+..+..|....+........+ .++|++|++++|.... .|+.|+++++.....++ .+..+++|+.|+|
T Consensus 170 l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 247 (330)
T 1xku_A 170 MKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247 (330)
T ss_dssp CTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred CCCcCEEECCCCccccCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEEC
Confidence 555555555555433222222 2788999998875422 27777777764333332 5667788888888
Q ss_pred ecCccchhhhcccccCccccccCCCCcccccceecccccccccccccCCCCCchHHHHHccCCCCCCCCCCCCc
Q 037138 709 ANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKSIYWNALPSHIWKKLIMGCAGLKKLPLDSNS 782 (806)
Q Consensus 709 ~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~ll~~c~~L~~L~l~~n~ 782 (806)
++|.+ ..+|. .+..+++|++|+++++ .++.++......... ....+.|+.|++++|.
T Consensus 248 ~~N~l----------~~lp~---~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~---~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 248 NNNKL----------VKVPG---GLADHKYIQVVYLHNN-NISAIGSNDFCPPGY---NTKKASYSGVSLFSNP 304 (330)
T ss_dssp CSSCC----------SSCCT---TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSC---CTTSCCCSEEECCSSS
T ss_pred CCCcC----------ccCCh---hhccCCCcCEEECCCC-cCCccChhhcCCccc---ccccccccceEeecCc
Confidence 88876 35664 3445578888888863 455554332211100 0123556666666665
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=3.5e-18 Score=181.85 Aligned_cols=260 Identities=20% Similarity=0.180 Sum_probs=180.6
Q ss_pred ccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCcccc-ChhhhcCCCCcEEecC
Q 037138 481 HLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIREL-PKELKALVNLKYLNLE 559 (806)
Q Consensus 481 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~L~ 559 (806)
+++.++++++.++.+|... .++|++|++++|.+.+..|..+.++++|++|++++|.++.+ |..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 7899999999998888753 47899999999965555567899999999999999999976 6789999999999999
Q ss_pred CCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhchhhcc
Q 037138 560 HSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSHELQN 639 (806)
Q Consensus 560 ~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~ 639 (806)
+|. +..+|.. +. ++|++|++++|.+....+ ..+..+++|+.|+++.|.+...... +..+..
T Consensus 111 ~n~-l~~l~~~-~~--~~L~~L~l~~n~i~~~~~-------------~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~~ 171 (332)
T 2ft3_A 111 KNH-LVEIPPN-LP--SSLVELRIHDNRIRKVPK-------------GVFSGLRNMNCIEMGGNPLENSGFE--PGAFDG 171 (332)
T ss_dssp SSC-CCSCCSS-CC--TTCCEEECCSSCCCCCCS-------------GGGSSCSSCCEEECCSCCCBGGGSC--TTSSCS
T ss_pred CCc-CCccCcc-cc--ccCCEEECCCCccCccCH-------------hHhCCCccCCEEECCCCccccCCCC--cccccC
Confidence 998 5788876 33 899999999998875432 3578899999999999887542211 122222
Q ss_pred ccccceeccCCCCCcccccccccccccceEeeccccCcc----------ccceeeecccCCcCCCC-ccccCCCcceEee
Q 037138 640 CTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLE----------EFKKVMIDFCIKLREVT-WLVFAPNLKSIHI 708 (806)
Q Consensus 640 ~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~----------~L~~L~l~~c~~l~~~~-~l~~l~~L~~L~L 708 (806)
. ++..+....+........+ .++|++|++++|.... .|+.|+++++.....++ ++..+++|+.|++
T Consensus 172 l-~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 248 (332)
T 2ft3_A 172 L-KLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248 (332)
T ss_dssp C-CCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred C-ccCEEECcCCCCCccCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEEC
Confidence 2 4445555554433322222 2689999999885422 26777777764433333 5677888888888
Q ss_pred ecCccchhhhcccccCccccccCCCCcccccceecccccccccccccCCCCCchHHHHHccCCCCCCCCCCCCc
Q 037138 709 ANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKSIYWNALPSHIWKKLIMGCAGLKKLPLDSNS 782 (806)
Q Consensus 709 ~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~ll~~c~~L~~L~l~~n~ 782 (806)
++|.+ ..+|.. +..+++|++|++++ ..++.++......... ....++|+.|.+++|.
T Consensus 249 ~~N~l----------~~lp~~---l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~---~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 249 DNNKL----------SRVPAG---LPDLKLLQVVYLHT-NNITKVGVNDFCPVGF---GVKRAYYNGISLFNNP 305 (332)
T ss_dssp CSSCC----------CBCCTT---GGGCTTCCEEECCS-SCCCBCCTTSSSCSSC---CSSSCCBSEEECCSSS
T ss_pred CCCcC----------eecChh---hhcCccCCEEECCC-CCCCccChhHcccccc---ccccccccceEeecCc
Confidence 88876 456643 44567888888887 3455554332211000 0113556666666665
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=5.7e-18 Score=175.96 Aligned_cols=219 Identities=20% Similarity=0.233 Sum_probs=160.3
Q ss_pred EEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCC-c
Q 037138 462 RISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTS-I 540 (806)
Q Consensus 462 ~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~-l 540 (806)
.+....+.+..+|.. -.++|+.|++++|.++.+++..|..+++|++|++++|.+.+..|..+..+++|++|++++|. +
T Consensus 15 ~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp EEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred EEEcCcCCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 455566677777653 35799999999999999998889999999999999996666668899999999999999997 8
Q ss_pred ccc-ChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeee
Q 037138 541 REL-PKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLT 619 (806)
Q Consensus 541 ~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 619 (806)
..+ |..+..+++|++|++++|.+ ..++...+.++++|++|++++|.+....+ ..+..+++|+.|+
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPD-------------DTFRDLGNLTHLF 159 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCT-------------TTTTTCTTCCEEE
T ss_pred cccCHHHhcCCcCCCEEECCCCcC-CEECHhHhhCCcCCCEEECCCCcccccCH-------------hHhccCCCccEEE
Confidence 877 67899999999999999984 55555558999999999999998875432 3477889999999
Q ss_pred EEecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCCCcccc
Q 037138 620 IALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVF 699 (806)
Q Consensus 620 l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~ 699 (806)
++.|.+..+.. ..+..+++|+.|++++|.... + .+..+..
T Consensus 160 l~~n~l~~~~~---------------------------~~~~~l~~L~~L~l~~n~l~~----~---------~~~~~~~ 199 (285)
T 1ozn_A 160 LHGNRISSVPE---------------------------RAFRGLHSLDRLLLHQNRVAH----V---------HPHAFRD 199 (285)
T ss_dssp CCSSCCCEECT---------------------------TTTTTCTTCCEEECCSSCCCE----E---------CTTTTTT
T ss_pred CCCCcccccCH---------------------------HHhcCccccCEEECCCCcccc----c---------CHhHccC
Confidence 98876643220 134556677777777764211 0 1234455
Q ss_pred CCCcceEeeecCccchhhhcccccCccccccCCCCcccccceeccccc
Q 037138 700 APNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRAL 747 (806)
Q Consensus 700 l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~ 747 (806)
+++|+.|++++|.+ ..+|. ..+..+++|+.|++++.
T Consensus 200 l~~L~~L~l~~n~l----------~~~~~--~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 200 LGRLMTLYLFANNL----------SALPT--EALAPLRALQYLRLNDN 235 (285)
T ss_dssp CTTCCEEECCSSCC----------SCCCH--HHHTTCTTCCEEECCSS
T ss_pred cccccEeeCCCCcC----------CcCCH--HHcccCcccCEEeccCC
Confidence 66777777777765 22221 11234457777777663
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=3.1e-18 Score=189.70 Aligned_cols=221 Identities=20% Similarity=0.252 Sum_probs=178.2
Q ss_pred EEEeeecccccccC--CCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCC
Q 037138 461 RRISLMRNKIEKLS--DTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKT 538 (806)
Q Consensus 461 ~~ls~~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n 538 (806)
+.+.+..|.+..++ ...++++|++|++++|.+..+++..|.++++|++|+|++|.+....+..+..+++|++|+|++|
T Consensus 67 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 67 RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146 (440)
T ss_dssp SEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred cEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence 67888889888775 3478999999999999999999889999999999999999554444457999999999999999
Q ss_pred CccccCh-hhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCe
Q 037138 539 SIRELPK-ELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNV 617 (806)
Q Consensus 539 ~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 617 (806)
.++.+|. .+.++++|++|++++|+.+..+|...+.++++|++|++++|.+... | .+..+++|+.
T Consensus 147 ~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~--------------~~~~l~~L~~ 211 (440)
T 3zyj_A 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P--------------NLTPLIKLDE 211 (440)
T ss_dssp CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C--------------CCTTCSSCCE
T ss_pred cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c--------------ccCCCcccCE
Confidence 9998876 6899999999999998778889887799999999999999988743 2 4678899999
Q ss_pred eeEEecchhhHHHhhhchhhccccccceeccCCCCCcccc-cccccccccceEeeccccCccccceeeecccCCcCCCCc
Q 037138 618 LTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNI-YSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTW 696 (806)
Q Consensus 618 L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~ 696 (806)
|+++.|.+..+. +..+..+..+..|...+|...... ..+..+++|+.|+|++|.... + ....
T Consensus 212 L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~---------~~~~ 274 (440)
T 3zyj_A 212 LDLSGNHLSAIR----PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL----L---------PHDL 274 (440)
T ss_dssp EECTTSCCCEEC----TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC----C---------CTTT
T ss_pred EECCCCccCccC----hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc----c---------ChhH
Confidence 999999876543 334455666666666666544332 468889999999999985221 0 1124
Q ss_pred cccCCCcceEeeecCcc
Q 037138 697 LVFAPNLKSIHIANCHF 713 (806)
Q Consensus 697 l~~l~~L~~L~L~~~~~ 713 (806)
+..+++|+.|+|++|+.
T Consensus 275 ~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 275 FTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TSSCTTCCEEECCSSCE
T ss_pred hccccCCCEEEcCCCCc
Confidence 56789999999999986
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=3e-18 Score=190.49 Aligned_cols=221 Identities=20% Similarity=0.227 Sum_probs=178.2
Q ss_pred EEEeeecccccccC--CCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCC
Q 037138 461 RRISLMRNKIEKLS--DTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKT 538 (806)
Q Consensus 461 ~~ls~~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n 538 (806)
+.+.+.+|.+..++ ...++++|+.|++++|.+..+++..|.++++|++|+|++|.+....+..+..+++|++|+|++|
T Consensus 78 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 157 (452)
T 3zyi_A 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157 (452)
T ss_dssp SEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred cEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence 77888999988774 3478999999999999999999888999999999999999655444556899999999999999
Q ss_pred CccccCh-hhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCe
Q 037138 539 SIRELPK-ELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNV 617 (806)
Q Consensus 539 ~l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 617 (806)
.++.+|. .+.++++|++|++++|+.++.+|...+..+++|++|++++|.+.+. | .+..+++|+.
T Consensus 158 ~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~--------------~~~~l~~L~~ 222 (452)
T 3zyi_A 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P--------------NLTPLVGLEE 222 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C--------------CCTTCTTCCE
T ss_pred CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c--------------cccccccccE
Confidence 9998876 6899999999999998778899987799999999999999988753 2 4678899999
Q ss_pred eeEEecchhhHHHhhhchhhccccccceeccCCCCCccc-ccccccccccceEeeccccCccccceeeecccCCcCCCCc
Q 037138 618 LTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFN-IYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTW 696 (806)
Q Consensus 618 L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~-~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~ 696 (806)
|+++.|.+..+. +..+..+..+..|...+|..... ...+..+++|+.|+|++|.... + ....
T Consensus 223 L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~---------~~~~ 285 (452)
T 3zyi_A 223 LEMSGNHFPEIR----PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS----L---------PHDL 285 (452)
T ss_dssp EECTTSCCSEEC----GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC----C---------CTTS
T ss_pred EECcCCcCcccC----cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc----c---------ChHH
Confidence 999999886543 23445555666666666654433 2468889999999999985211 0 0123
Q ss_pred cccCCCcceEeeecCcc
Q 037138 697 LVFAPNLKSIHIANCHF 713 (806)
Q Consensus 697 l~~l~~L~~L~L~~~~~ 713 (806)
+..+++|+.|+|++|+.
T Consensus 286 ~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNPW 302 (452)
T ss_dssp STTCTTCCEEECCSSCE
T ss_pred hccccCCCEEEccCCCc
Confidence 56789999999999975
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=183.33 Aligned_cols=237 Identities=19% Similarity=0.218 Sum_probs=175.5
Q ss_pred EEEEeeecccccccCC--CCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcc-cCCCCCCCEEEec
Q 037138 460 RRRISLMRNKIEKLSD--TPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPG-ISKLVSLQYLNLS 536 (806)
Q Consensus 460 ~~~ls~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~-i~~l~~L~~L~Ls 536 (806)
.+.+.+.++.+..++. ..++++|++|++++|.++.+++..|..+++|++|++++|. +..+|.. ++.+++|++|+++
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECT
T ss_pred CcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECC
Confidence 3788888999888765 5789999999999999999988889999999999999995 4556654 8999999999999
Q ss_pred CCCccccCh--hhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCC
Q 037138 537 KTSIRELPK--ELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKH 614 (806)
Q Consensus 537 ~n~l~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 614 (806)
+|.++.+|. .+..+++|++|++++|..++.++...+.++++|++|++++|.+.+..| ..+..+++
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~l~~l~~ 199 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP-------------KSLKSIQN 199 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-------------TTTTTCSE
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH-------------HHHhcccc
Confidence 999999987 689999999999999965677766568999999999999998876534 46778889
Q ss_pred CCeeeEEecchhhHHHhhhchhhccccccceeccCCCCCcccc----cccccccccceEeeccccCc-------------
Q 037138 615 LNVLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNI----YSLADLKHLDKLDLIYCRNL------------- 677 (806)
Q Consensus 615 L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~----~~l~~l~~L~~L~L~~~~~~------------- 677 (806)
|+.|+++.|.+..+.... +..+..+..|+..++...... ........++.++++++...
T Consensus 200 L~~L~l~~n~l~~~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~ 275 (353)
T 2z80_A 200 VSHLILHMKQHILLLEIF----VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275 (353)
T ss_dssp EEEEEEECSCSTTHHHHH----HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHT
T ss_pred CCeecCCCCccccchhhh----hhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhc
Confidence 999999998876554321 112233333333333222111 11223455666666655322
Q ss_pred -cccceeeecccCCcCCCCc-cccCCCcceEeeecCccc
Q 037138 678 -EEFKKVMIDFCIKLREVTW-LVFAPNLKSIHIANCHFM 714 (806)
Q Consensus 678 -~~L~~L~l~~c~~l~~~~~-l~~l~~L~~L~L~~~~~~ 714 (806)
..|+.|+++++.-...+.. +..+++|++|+|++|+..
T Consensus 276 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 276 ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 2377777777644433334 478999999999999873
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=1.9e-18 Score=182.34 Aligned_cols=250 Identities=14% Similarity=0.045 Sum_probs=167.2
Q ss_pred CCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEE
Q 037138 477 PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYL 556 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L 556 (806)
..+++|+.|++++|.+..+++..|..+++|++|+|++|.+.+..| +..+++|++|++++|.++.+| .+++|++|
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L 104 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETL 104 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEE
Confidence 456789999999999988888888999999999999995544333 888999999999999888776 34889999
Q ss_pred ecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhchh
Q 037138 557 NLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSHE 636 (806)
Q Consensus 557 ~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~ 636 (806)
++++|. +..++. ..+++|++|++++|.+.+..+ ..+..+++|+.|+++.|.+.... +..
T Consensus 105 ~l~~n~-l~~~~~---~~~~~L~~L~l~~N~l~~~~~-------------~~~~~l~~L~~L~Ls~N~l~~~~----~~~ 163 (317)
T 3o53_A 105 HAANNN-ISRVSC---SRGQGKKNIYLANNKITMLRD-------------LDEGCRSRVQYLDLKLNEIDTVN----FAE 163 (317)
T ss_dssp ECCSSC-CSEEEE---CCCSSCEEEECCSSCCCSGGG-------------BCTGGGSSEEEEECTTSCCCEEE----GGG
T ss_pred ECCCCc-cCCcCc---cccCCCCEEECCCCCCCCccc-------------hhhhccCCCCEEECCCCCCCccc----HHH
Confidence 999987 455554 347889999999988875422 24566788889988888765432 111
Q ss_pred h-ccccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCCCccccCCCcceEeeecCccch
Q 037138 637 L-QNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFAPNLKSIHIANCHFMQ 715 (806)
Q Consensus 637 l-~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~~~~~~ 715 (806)
+ ..+..+..|+...|..... +....+++|+.|++++|.. ...++.+..+++|+.|++++|.+
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l--------------~~l~~~~~~l~~L~~L~L~~N~l-- 226 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKL--------------AFMGPEFQSAAGVTWISLRNNKL-- 226 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCC--------------CEECGGGGGGTTCSEEECTTSCC--
T ss_pred HhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcC--------------CcchhhhcccCcccEEECcCCcc--
Confidence 1 1223334444444433222 2333466666777666642 22234567789999999999987
Q ss_pred hhhcccccCccccccCCCCcccccceecccccccc-cccccCCCCCchHHHH-HccCCCCCCCCCCCC
Q 037138 716 EIISARKLGEVPELIGNLKPFAKLQYLHLRALPSL-KSIYWNALPSHIWKKL-IMGCAGLKKLPLDSN 781 (806)
Q Consensus 716 ~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L-~~l~~~~~~~~~L~~l-l~~c~~L~~L~l~~n 781 (806)
..+|. .+..+++|+.|++++++-. ..++.....++.++.+ +.+++.++..+....
T Consensus 227 --------~~l~~---~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~ 283 (317)
T 3o53_A 227 --------VLIEK---ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283 (317)
T ss_dssp --------CEECT---TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCC
T ss_pred --------cchhh---HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhcc
Confidence 45664 3455679999999985433 1222222345667776 666666665544443
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=2.8e-17 Score=187.42 Aligned_cols=113 Identities=21% Similarity=0.242 Sum_probs=92.0
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
+.+.+.++.+..+|.... ++|++|++++|.++.++. .+++|++|+|++| .+..+|. .+++|++|++++|.+
T Consensus 43 ~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 43 AVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSNPL 113 (622)
T ss_dssp CEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSCCC
T ss_pred cEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCCcC
Confidence 567888888888876433 789999999998888776 5788999999999 4566776 678999999999999
Q ss_pred cccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCC
Q 037138 541 RELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSG 590 (806)
Q Consensus 541 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~ 590 (806)
+.+|. .+++|+.|++++|+ +..+|.. +++|++|++++|.+.+
T Consensus 114 ~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 114 THLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLAS 155 (622)
T ss_dssp CCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCSC
T ss_pred CCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcCCC
Confidence 98887 67889999999987 5667763 4889999999888765
No 60
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=5.9e-18 Score=177.59 Aligned_cols=127 Identities=21% Similarity=0.322 Sum_probs=81.3
Q ss_pred CCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEE
Q 037138 477 PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYL 556 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L 556 (806)
.++++|++|++++|.+..++. +..+++|++|++++| .+..+|. +..+++|++|++++|.++.+| .+..+++|++|
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred HHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 345667777777776666542 666777777777777 3444444 667777777777777766665 46667777777
Q ss_pred ecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchh
Q 037138 557 NLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFF 626 (806)
Q Consensus 557 ~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 626 (806)
++++|. +..+|. +..+++|++|++++|.+.+. ..+..+++|+.|+++.|.+.
T Consensus 113 ~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~---------------~~l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 113 DLTSTQ-ITDVTP--LAGLSNLQVLYLDLNQITNI---------------SPLAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp ECTTSC-CCCCGG--GTTCTTCCEEECCSSCCCCC---------------GGGGGCTTCCEEECCSSCCC
T ss_pred ECCCCC-CCCchh--hcCCCCCCEEECCCCccCcC---------------ccccCCCCccEEEccCCcCC
Confidence 777776 345554 66677777777777666543 12556666777766665543
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=2.6e-18 Score=192.07 Aligned_cols=235 Identities=15% Similarity=0.050 Sum_probs=165.6
Q ss_pred CCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEE
Q 037138 477 PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYL 556 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L 556 (806)
..+++|++|++++|.+..+++..|..+++|++|+|++|.+.+..| ++.+++|++|+|++|.++.+|. .++|++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 456799999999999999988889999999999999996554444 8999999999999999988774 3899999
Q ss_pred ecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhchh
Q 037138 557 NLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSHE 636 (806)
Q Consensus 557 ~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~ 636 (806)
++++|.+ ..+|. ..+++|++|++++|.+.+..| ..+..+++|+.|+++.|.+.+.. +..
T Consensus 105 ~L~~N~l-~~~~~---~~l~~L~~L~L~~N~l~~~~~-------------~~~~~l~~L~~L~Ls~N~l~~~~----~~~ 163 (487)
T 3oja_A 105 HAANNNI-SRVSC---SRGQGKKNIYLANNKITMLRD-------------LDEGCRSRVQYLDLKLNEIDTVN----FAE 163 (487)
T ss_dssp ECCSSCC-CCEEE---CCCSSCEEEECCSSCCCSGGG-------------BCGGGGSSEEEEECTTSCCCEEE----GGG
T ss_pred ECcCCcC-CCCCc---cccCCCCEEECCCCCCCCCCc-------------hhhcCCCCCCEEECCCCCCCCcC----hHH
Confidence 9999984 55554 357889999999998886533 34677889999999888776532 122
Q ss_pred hc-cccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCCCccccCCCcceEeeecCccch
Q 037138 637 LQ-NCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFAPNLKSIHIANCHFMQ 715 (806)
Q Consensus 637 l~-~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~~~~~~ 715 (806)
+. .+..+..|+...|..... +....+++|+.|+|++|.. ...++.+..+++|+.|+|++|.+
T Consensus 164 l~~~l~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~l--------------~~~~~~~~~l~~L~~L~Ls~N~l-- 226 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKL--------------AFMGPEFQSAAGVTWISLRNNKL-- 226 (487)
T ss_dssp GGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCC--------------CEECGGGGGGTTCSEEECTTSCC--
T ss_pred HhhhCCcccEEecCCCccccc-cccccCCCCCEEECCCCCC--------------CCCCHhHcCCCCccEEEecCCcC--
Confidence 22 234444555555544333 2344567777777777642 12234567789999999999987
Q ss_pred hhhcccccCccccccCCCCcccccceecccccccc-cccccCCCCCchHHHH
Q 037138 716 EIISARKLGEVPELIGNLKPFAKLQYLHLRALPSL-KSIYWNALPSHIWKKL 766 (806)
Q Consensus 716 ~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L-~~l~~~~~~~~~L~~l 766 (806)
..+|. .+..+++|+.|++++++-. ..++.....++.+..+
T Consensus 227 --------~~lp~---~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 227 --------VLIEK---ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (487)
T ss_dssp --------CEECT---TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred --------cccch---hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence 35665 3455679999999985433 1222222334555555
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.73 E-value=3e-17 Score=191.22 Aligned_cols=145 Identities=21% Similarity=0.204 Sum_probs=121.8
Q ss_pred ccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccCh-h
Q 037138 468 NKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPK-E 546 (806)
Q Consensus 468 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~-~ 546 (806)
..+..+|... -+++++|+|++|.++.+++..|.++++|++|+|++|.+.+..|..|.+|++|++|+|++|+++.+|. .
T Consensus 41 ~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 119 (635)
T 4g8a_A 41 LNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 119 (635)
T ss_dssp SCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred CCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence 3556666431 1479999999999999999889999999999999996555556679999999999999999999986 5
Q ss_pred hhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCC-CCCCccccCCccchHHHhcCCCCCCeeeEEecch
Q 037138 547 LKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGK-IPLDSILFGGCESLVEELISLKHLNVLTIALKSF 625 (806)
Q Consensus 547 i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 625 (806)
|.+|++|++|++++|+ +..+|...|+++++|++|++++|.+... +| ..+..+++|+.|+++.|.+
T Consensus 120 f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~-------------~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLP-------------EYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp GTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCC-------------GGGGGCTTCCEEECCSSCC
T ss_pred hcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCc-------------hhhccchhhhhhcccCccc
Confidence 7999999999999998 5778877799999999999999988653 22 4677889999999988876
Q ss_pred hh
Q 037138 626 FA 627 (806)
Q Consensus 626 ~~ 627 (806)
..
T Consensus 186 ~~ 187 (635)
T 4g8a_A 186 QS 187 (635)
T ss_dssp CE
T ss_pred cc
Confidence 43
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=8.9e-18 Score=185.85 Aligned_cols=216 Identities=17% Similarity=0.130 Sum_probs=142.8
Q ss_pred EEEeeecccccccCC-CCCCCccccccccccchhcchhHhhccCCcc-------------cEEEccCCCcccccCcccCC
Q 037138 461 RRISLMRNKIEKLSD-TPTCPHLLSLFPNINRLKTIARRFFDFMPSL-------------TVLNLSNNGFLTKLRPGISK 526 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------~~L~Ls~~~~~~~lp~~i~~ 526 (806)
+.+.+.++.+..+|. ..++++|+.|++++|.+.+..+..++.+++| ++|++++| .+..+|..
T Consensus 14 ~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~~--- 89 (454)
T 1jl5_A 14 QEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPEL--- 89 (454)
T ss_dssp --------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCSC---
T ss_pred hhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCCC---
Confidence 667777888877775 4788999999999998875555557777664 88999998 45556652
Q ss_pred CCCCCEEEecCCCccccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchH
Q 037138 527 LVSLQYLNLSKTSIRELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLV 606 (806)
Q Consensus 527 l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 606 (806)
.++|++|++++|.++.+|.. +++|++|++++|. +..+|. + .++|++|++++|.+.+ +|
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~--~--~~~L~~L~L~~n~l~~-lp------------- 147 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSD--L--PPLLEYLGVSNNQLEK-LP------------- 147 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCS--C--CTTCCEEECCSSCCSS-CC-------------
T ss_pred cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccC--C--CCCCCEEECcCCCCCC-Cc-------------
Confidence 36889999999988888854 4788899998887 455554 1 2688999998887764 33
Q ss_pred HHhcCCCCCCeeeEEecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCcc------cc
Q 037138 607 EELISLKHLNVLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLE------EF 680 (806)
Q Consensus 607 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~------~L 680 (806)
.+..+++|+.|+++.|.+..++.. ... +..|+...+.... .+.+..+++|+.|++++|...+ .|
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~lp~~------~~~--L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L 217 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKKLPDL------PPS--LEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKKLPDLPLSL 217 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSCCCCC------CTT--CCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred -ccCCCCCCCEEECCCCcCcccCCC------ccc--ccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCcCCCCcCcc
Confidence 377888999999998887654321 123 3344444443333 2368888999999999886543 48
Q ss_pred ceeeecccCCcCCCCccccCCCcceEeeecCcc
Q 037138 681 KKVMIDFCIKLREVTWLVFAPNLKSIHIANCHF 713 (806)
Q Consensus 681 ~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~~~~ 713 (806)
+.|++++|. ++.++.+..+++|+.|++++|.+
T Consensus 218 ~~L~l~~n~-l~~lp~~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 218 ESIVAGNNI-LEELPELQNLPFLTTIYADNNLL 249 (454)
T ss_dssp CEEECCSSC-CSSCCCCTTCTTCCEEECCSSCC
T ss_pred cEEECcCCc-CCcccccCCCCCCCEEECCCCcC
Confidence 888998874 44566678889999999999876
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=9.4e-19 Score=184.75 Aligned_cols=242 Identities=15% Similarity=0.132 Sum_probs=183.3
Q ss_pred EEEEeeecccccccCC--CCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecC
Q 037138 460 RRRISLMRNKIEKLSD--TPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSK 537 (806)
Q Consensus 460 ~~~ls~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~ 537 (806)
.+.+.+.++.+..++. ...+++|++|++++|.+...++ |..+++|++|++++| .+..+| .+++|++|++++
T Consensus 36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~L~l~~ 108 (317)
T 3o53_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELL----VGPSIETLHAAN 108 (317)
T ss_dssp CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEE----ECTTCCEEECCS
T ss_pred CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-cccccc----CCCCcCEEECCC
Confidence 4788899998887752 4789999999999999987776 899999999999999 455554 348999999999
Q ss_pred CCccccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHh-cCCCCCC
Q 037138 538 TSIRELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEEL-ISLKHLN 616 (806)
Q Consensus 538 n~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~ 616 (806)
|.++.+|.. .+++|++|++++|.+ ..++...++.+++|++|++++|.+.+..+ ..+ ..+++|+
T Consensus 109 n~l~~~~~~--~~~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------------~~~~~~l~~L~ 172 (317)
T 3o53_A 109 NNISRVSCS--RGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNF-------------AELAASSDTLE 172 (317)
T ss_dssp SCCSEEEEC--CCSSCEEEECCSSCC-CSGGGBCTGGGSSEEEEECTTSCCCEEEG-------------GGGGGGTTTCC
T ss_pred CccCCcCcc--ccCCCCEEECCCCCC-CCccchhhhccCCCCEEECCCCCCCcccH-------------HHHhhccCcCC
Confidence 999987643 478999999999984 55655458889999999999998875422 233 4789999
Q ss_pred eeeEEecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCCCc
Q 037138 617 VLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTW 696 (806)
Q Consensus 617 ~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~ 696 (806)
.|+++.|.+..+.. ...+..+..|+...|......+.+..+++|+.|++++|... . .+..
T Consensus 173 ~L~L~~N~l~~~~~------~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~----~----------l~~~ 232 (317)
T 3o53_A 173 HLNLQYNFIYDVKG------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV----L----------IEKA 232 (317)
T ss_dssp EEECTTSCCCEEEC------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC----E----------ECTT
T ss_pred EEECCCCcCccccc------ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc----c----------hhhH
Confidence 99999998866532 11244555666666655554456888999999999998522 1 1234
Q ss_pred cccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceeccccccccccccc
Q 037138 697 LVFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKSIYW 755 (806)
Q Consensus 697 l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~~ 755 (806)
+..+++|+.|++++|.... +.+|.++ ..+++|+.|++.+++.++....
T Consensus 233 ~~~l~~L~~L~l~~N~~~~--------~~~~~~~---~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 233 LRFSQNLEHFDLRGNGFHC--------GTLRDFF---SKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CCCCTTCCEEECTTCCCBH--------HHHHHHH---HTCHHHHHHHHHHHHHHHSSSS
T ss_pred hhcCCCCCEEEccCCCccC--------cCHHHHH---hccccceEEECCCchhccCCch
Confidence 6778999999999999842 2344333 3457999999998777766543
No 65
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=1e-17 Score=172.55 Aligned_cols=126 Identities=25% Similarity=0.353 Sum_probs=60.5
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
+.+.+..+.+..++....+++|++|++++|.+..++ .+..+++|++|++++|.+.+..|..++.+++|++|++++|.+
T Consensus 44 ~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 121 (272)
T 3rfs_A 44 DQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121 (272)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred eeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcC
Confidence 334444444444444444555555555555544432 244555555555555533332333345555555555555555
Q ss_pred cccChh-hhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCC
Q 037138 541 RELPKE-LKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYS 589 (806)
Q Consensus 541 ~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 589 (806)
+.+|.. ++.+++|++|++++|. +..+|...++.+++|++|++++|.+.
T Consensus 122 ~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 122 QSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcC
Confidence 544432 3455555555555554 23444333445555555555555444
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=3.1e-17 Score=172.14 Aligned_cols=186 Identities=23% Similarity=0.307 Sum_probs=156.0
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
+.+.+.++.+..++....+++|++|++++|.+..+++ +..+++|++|++++|. +..+| .+..+++|++|++++|.+
T Consensus 44 ~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~~n~l 119 (308)
T 1h6u_A 44 TTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTSTQI 119 (308)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTTSCC
T ss_pred CEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECCCCCC
Confidence 7788889999888888889999999999999998887 8999999999999995 55565 799999999999999999
Q ss_pred cccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeE
Q 037138 541 RELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTI 620 (806)
Q Consensus 541 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 620 (806)
+.+|. +..+++|++|++++|. +..+|. +..+++|++|++++|.+.+. ..+..+++|+.|++
T Consensus 120 ~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~---------------~~l~~l~~L~~L~l 180 (308)
T 1h6u_A 120 TDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQVSDL---------------TPLANLSKLTTLKA 180 (308)
T ss_dssp CCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCCC---------------GGGTTCTTCCEEEC
T ss_pred CCchh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCCcCCCC---------------hhhcCCCCCCEEEC
Confidence 99875 9999999999999998 566776 88999999999999988753 13788999999999
Q ss_pred EecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCCCccccC
Q 037138 621 ALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFA 700 (806)
Q Consensus 621 ~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l 700 (806)
+.|.+..+. .+..+++|+.|++++|.. ...+.+..+
T Consensus 181 ~~n~l~~~~-----------------------------~l~~l~~L~~L~L~~N~l---------------~~~~~l~~l 216 (308)
T 1h6u_A 181 DDNKISDIS-----------------------------PLASLPNLIEVHLKNNQI---------------SDVSPLANT 216 (308)
T ss_dssp CSSCCCCCG-----------------------------GGGGCTTCCEEECTTSCC---------------CBCGGGTTC
T ss_pred CCCccCcCh-----------------------------hhcCCCCCCEEEccCCcc---------------CccccccCC
Confidence 877664332 245678899999988842 223346778
Q ss_pred CCcceEeeecCcc
Q 037138 701 PNLKSIHIANCHF 713 (806)
Q Consensus 701 ~~L~~L~L~~~~~ 713 (806)
++|+.|++++|.+
T Consensus 217 ~~L~~L~l~~N~i 229 (308)
T 1h6u_A 217 SNLFIVTLTNQTI 229 (308)
T ss_dssp TTCCEEEEEEEEE
T ss_pred CCCCEEEccCCee
Confidence 9999999999987
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=3.5e-17 Score=169.96 Aligned_cols=224 Identities=17% Similarity=0.151 Sum_probs=172.3
Q ss_pred ccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCcccc-ChhhhcCCCCcEEecCCC
Q 037138 483 LSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIREL-PKELKALVNLKYLNLEHS 561 (806)
Q Consensus 483 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~L~~~ 561 (806)
++++++++.++.+|.. ..++|++|++++|.+.+..+..+..+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 5778888888888764 357999999999965555556799999999999999999977 778999999999999999
Q ss_pred ccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhchhhcccc
Q 037138 562 RYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSHELQNCT 641 (806)
Q Consensus 562 ~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~~ 641 (806)
..++.++...+..+++|++|++++|.+.+..+ ..+..+++|+.|+++.|.+..+.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~~~~l~~L~~L~l~~n~l~~~~------------ 145 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGP-------------GLFRGLAALQYLYLQDNALQALP------------ 145 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-------------TTTTTCTTCCEEECCSSCCCCCC------------
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECH-------------hHhhCCcCCCEEECCCCcccccC------------
Confidence 75677755558999999999999999876533 45778899999999877654221
Q ss_pred ccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCCCccccCCCcceEeeecCccchhhhccc
Q 037138 642 KSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFAPNLKSIHIANCHFMQEIISAR 721 (806)
Q Consensus 642 ~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~~~~~~~i~~~~ 721 (806)
...+..+++|+.|++++|... .+ ....+..+++|+.|++++|.+.
T Consensus 146 ---------------~~~~~~l~~L~~L~l~~n~l~----~~---------~~~~~~~l~~L~~L~l~~n~l~------- 190 (285)
T 1ozn_A 146 ---------------DDTFRDLGNLTHLFLHGNRIS----SV---------PERAFRGLHSLDRLLLHQNRVA------- 190 (285)
T ss_dssp ---------------TTTTTTCTTCCEEECCSSCCC----EE---------CTTTTTTCTTCCEEECCSSCCC-------
T ss_pred ---------------HhHhccCCCccEEECCCCccc----cc---------CHHHhcCccccCEEECCCCccc-------
Confidence 114677899999999998521 11 0124667899999999999872
Q ss_pred ccCccccccCCCCcccccceecccccccccccccCCCCCchHHHHHccCCCCCCCCCCCCccc
Q 037138 722 KLGEVPELIGNLKPFAKLQYLHLRALPSLKSIYWNALPSHIWKKLIMGCAGLKKLPLDSNSRK 784 (806)
Q Consensus 722 ~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~ll~~c~~L~~L~l~~n~~~ 784 (806)
+..|. .+..+++|+.|+++++ +++.++. ..+..+++|+.|++++|.+.
T Consensus 191 --~~~~~---~~~~l~~L~~L~l~~n-~l~~~~~---------~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 191 --HVHPH---AFRDLGRLMTLYLFAN-NLSALPT---------EALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp --EECTT---TTTTCTTCCEEECCSS-CCSCCCH---------HHHTTCTTCCEEECCSSCEE
T ss_pred --ccCHh---HccCcccccEeeCCCC-cCCcCCH---------HHcccCcccCEEeccCCCcc
Confidence 23343 4556789999999985 5554321 22578899999999999853
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=1.6e-17 Score=174.62 Aligned_cols=222 Identities=19% Similarity=0.225 Sum_probs=171.3
Q ss_pred EEEeeecccccccCC--CCCCCccccccccccchhcch--hHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEec
Q 037138 461 RRISLMRNKIEKLSD--TPTCPHLLSLFPNINRLKTIA--RRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLS 536 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls 536 (806)
+.+.+.++.+..++. ..++++|++|++++|.+..+. +..+..+++|++|++++| .+..+|..+..+++|++|+++
T Consensus 31 ~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~ 109 (306)
T 2z66_A 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQ 109 (306)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECT
T ss_pred CEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEEECC
Confidence 778899999988876 368999999999999887552 334667999999999999 566788889999999999999
Q ss_pred CCCccccCh--hhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCC-CCCCCccccCCccchHHHhcCCC
Q 037138 537 KTSIRELPK--ELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSG-KIPLDSILFGGCESLVEELISLK 613 (806)
Q Consensus 537 ~n~l~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~L~ 613 (806)
+|.++.+|. .+..+++|++|++++|.+....| ..+..+++|++|++++|.+.+ .+| ..+..++
T Consensus 110 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~-------------~~~~~l~ 175 (306)
T 2z66_A 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLP-------------DIFTELR 175 (306)
T ss_dssp TSEEESSTTTTTTTTCTTCCEEECTTSCCEECST-TTTTTCTTCCEEECTTCEEGGGEEC-------------SCCTTCT
T ss_pred CCcccccccchhhhhccCCCEEECCCCcCCccch-hhcccCcCCCEEECCCCccccccch-------------hHHhhCc
Confidence 999998874 78999999999999998544444 448899999999999998765 222 3577889
Q ss_pred CCCeeeEEecchhhHHHhhhchhhccccccceeccCCCCCcccc-cccccccccceEeeccccCccccceeeecccCCcC
Q 037138 614 HLNVLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNI-YSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLR 692 (806)
Q Consensus 614 ~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~ 692 (806)
+|+.|+++.|.+..+. +..+..+..+..|....|...... ..+..+++|+.|++++|.....
T Consensus 176 ~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------- 238 (306)
T 2z66_A 176 NLTFLDLSQCQLEQLS----PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS------------- 238 (306)
T ss_dssp TCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC-------------
T ss_pred CCCEEECCCCCcCCcC----HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc-------------
Confidence 9999999998876542 223444555666666665443332 3577889999999999853221
Q ss_pred CCCccccC-CCcceEeeecCccc
Q 037138 693 EVTWLVFA-PNLKSIHIANCHFM 714 (806)
Q Consensus 693 ~~~~l~~l-~~L~~L~L~~~~~~ 714 (806)
.+..+..+ ++|+.|+|++|.+.
T Consensus 239 ~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 239 KKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SSSSCCCCCTTCCEEECTTCCEE
T ss_pred CHHHHHhhhccCCEEEccCCCee
Confidence 12345556 48999999999873
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=2.3e-17 Score=173.58 Aligned_cols=228 Identities=21% Similarity=0.165 Sum_probs=156.7
Q ss_pred cccccccccchhc--chhHh------hccCCcccEEEccCCCcccccCccc--CCCCCCCEEEecCCCccccChhhhcC-
Q 037138 482 LLSLFPNINRLKT--IARRF------FDFMPSLTVLNLSNNGFLTKLRPGI--SKLVSLQYLNLSKTSIRELPKELKAL- 550 (806)
Q Consensus 482 L~~L~l~~n~l~~--~~~~~------~~~l~~L~~L~Ls~~~~~~~lp~~i--~~l~~L~~L~Ls~n~l~~lp~~i~~L- 550 (806)
|+.|++++|.+.. ++... +..+++|++|+|++|.+.+.+|..+ +.+++|++|++++|.++.+|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 8889999987754 23221 1268999999999997777888876 88999999999999999888888887
Q ss_pred ----CCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHh--cCCCCCCeeeEEecc
Q 037138 551 ----VNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEEL--ISLKHLNVLTIALKS 624 (806)
Q Consensus 551 ----~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~~L~l~~~~ 624 (806)
++|++|++++|++ ..+|...++.+++|++|++++|.+.+.++ .+..+ ..+++|+.|+++.|.
T Consensus 145 ~~~~~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------~~~~~~~~~l~~L~~L~L~~N~ 212 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELGERG-----------LISALCPLKFPTLQVLALRNAG 212 (312)
T ss_dssp TTCCTTCCEEEEESCSC-CCCCTTTCCCCSSCCEEECCSCTTCHHHH-----------HHHHSCTTSCTTCCEEECTTSC
T ss_pred HhhcCCCcEEEeeCCCC-ccchHHHhccCCCCCEEECCCCCcCcchH-----------HHHHHHhccCCCCCEEECCCCc
Confidence 8999999999984 55664458999999999999998764311 12344 788999999998887
Q ss_pred hhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCCCccccCCCcc
Q 037138 625 FFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFAPNLK 704 (806)
Q Consensus 625 ~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~ 704 (806)
+..+..... ..+..+++|+.|++++|..... ...+.+..+++|+
T Consensus 213 l~~~~~~~~------------------------~~~~~l~~L~~L~Ls~N~l~~~------------~~~~~~~~l~~L~ 256 (312)
T 1wwl_A 213 METPSGVCS------------------------ALAAARVQLQGLDLSHNSLRDA------------AGAPSCDWPSQLN 256 (312)
T ss_dssp CCCHHHHHH------------------------HHHHTTCCCSEEECTTSCCCSS------------CCCSCCCCCTTCC
T ss_pred CcchHHHHH------------------------HHHhcCCCCCEEECCCCcCCcc------------cchhhhhhcCCCC
Confidence 764432111 0123456777777777742210 0112334467777
Q ss_pred eEeeecCccchhhhcccccCccccccCCCCcccccceecccccccccccccCCCCCchHHHHHccCCCCCCCCCCCCccc
Q 037138 705 SIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKSIYWNALPSHIWKKLIMGCAGLKKLPLDSNSRK 784 (806)
Q Consensus 705 ~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~ll~~c~~L~~L~l~~n~~~ 784 (806)
.|+|++|.+ ..+|..+. ++|++|+|++ .+++.++. +..+++|+.|++++|.+.
T Consensus 257 ~L~Ls~N~l----------~~ip~~~~-----~~L~~L~Ls~-N~l~~~p~-----------~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 257 SLNLSFTGL----------KQVPKGLP-----AKLSVLDLSY-NRLDRNPS-----------PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EEECTTSCC----------SSCCSSCC-----SEEEEEECCS-SCCCSCCC-----------TTTSCEEEEEECTTCTTT
T ss_pred EEECCCCcc----------Chhhhhcc-----CCceEEECCC-CCCCCChh-----------HhhCCCCCEEeccCCCCC
Confidence 888877776 35554222 5777888776 35555421 235677777777777643
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=5.9e-17 Score=166.72 Aligned_cols=126 Identities=21% Similarity=0.290 Sum_probs=66.5
Q ss_pred cccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhh-hcCCCCcEEecCC
Q 037138 482 LLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKEL-KALVNLKYLNLEH 560 (806)
Q Consensus 482 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i-~~L~~L~~L~L~~ 560 (806)
+++++++++.++.+|... .++|+.|+|++|.+.+..+..+..+++|++|++++|.++.+|..+ ..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 445555555555555431 145566666666333323335555666666666666665555442 5566666666666
Q ss_pred CccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecc
Q 037138 561 SRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKS 624 (806)
Q Consensus 561 ~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 624 (806)
|. +..+|...+..+++|++|++++|.+....+ ..+..+++|+.|+++.|.
T Consensus 95 n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 95 NK-LQALPIGVFDQLVNLAELRLDRNQLKSLPP-------------RVFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp SC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCT-------------TTTTTCTTCCEEECCSSC
T ss_pred Cc-CCcCCHhHcccccCCCEEECCCCccCeeCH-------------HHhCcCcCCCEEECCCCc
Confidence 55 344554445556666666666655544322 234455556655555443
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=7.7e-17 Score=166.53 Aligned_cols=146 Identities=21% Similarity=0.211 Sum_probs=120.1
Q ss_pred ccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccC-hh
Q 037138 468 NKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELP-KE 546 (806)
Q Consensus 468 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp-~~ 546 (806)
..+..+|... .++|++|++++|.++.+++..|..+++|++|++++|.+.+..+..+..+++|++|++++|.++.+| ..
T Consensus 17 ~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 17 LNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp SCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence 3455555432 257999999999999998878999999999999999655555668999999999999999999776 57
Q ss_pred hhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCC-CCCCccccCCccchHHHhcCCCCCCeeeEEecch
Q 037138 547 LKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGK-IPLDSILFGGCESLVEELISLKHLNVLTIALKSF 625 (806)
Q Consensus 547 i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 625 (806)
+.++++|++|++++|. +..++...++.+++|++|++++|.+.+. +| ..+..+++|+.|+++.|.+
T Consensus 96 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~-------------~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 96 FSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLP-------------EYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp TTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCC-------------GGGGGCTTCCEEECCSSCC
T ss_pred hcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCc-------------hhhccCCCCCEEECCCCCC
Confidence 8999999999999998 4556654489999999999999988753 23 5688899999999998876
Q ss_pred hhH
Q 037138 626 FAL 628 (806)
Q Consensus 626 ~~~ 628 (806)
..+
T Consensus 162 ~~~ 164 (276)
T 2z62_A 162 QSI 164 (276)
T ss_dssp CEE
T ss_pred CcC
Confidence 543
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=3.3e-18 Score=180.13 Aligned_cols=252 Identities=15% Similarity=0.098 Sum_probs=171.7
Q ss_pred CCCCccccccccccchhcchhHhhccCCcccEEEccCCCc-ccccCcccC-------CCCCCCEEEecCCCcc-ccChhh
Q 037138 477 PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGF-LTKLRPGIS-------KLVSLQYLNLSKTSIR-ELPKEL 547 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~-~~~lp~~i~-------~l~~L~~L~Ls~n~l~-~lp~~i 547 (806)
...++|+.|++++|.+ .+|...... |++|+|++|.+ ...+|..+. ++++|++|++++|.++ .+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3456789999999988 777664443 89999999955 234666665 7899999999999998 788876
Q ss_pred --hcCCCCcEEecCCCccccccccccccCC-----CCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeE
Q 037138 548 --KALVNLKYLNLEHSRYLHTIPRQLICSF-----SMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTI 620 (806)
Q Consensus 548 --~~L~~L~~L~L~~~~~l~~lp~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 620 (806)
+.+++|++|++++|.+ ..+|.. ++.+ ++|++|++++|.+.+..+ ..+..+++|+.|++
T Consensus 116 ~~~~l~~L~~L~Ls~N~l-~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~-------------~~~~~l~~L~~L~L 180 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSW-ATRDAW-LAELQQWLKPGLKVLSIAQAHSLNFSC-------------EQVRVFPALSTLDL 180 (312)
T ss_dssp SSCCSCCCSEEEEESCBC-SSSSSH-HHHHHTTCCTTCCEEEEESCSCCCCCT-------------TTCCCCSSCCEEEC
T ss_pred HHhcCCCccEEEccCCCC-cchhHH-HHHHHHhhcCCCcEEEeeCCCCccchH-------------HHhccCCCCCEEEC
Confidence 8999999999999985 445754 6666 899999999999876543 46788999999999
Q ss_pred EecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCC--Cccc
Q 037138 621 ALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREV--TWLV 698 (806)
Q Consensus 621 ~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~--~~l~ 698 (806)
+.|.+.+...... . ..+..+++|++|++++|.... +... ..+.
T Consensus 181 s~N~l~~~~~~~~--~---------------------~~~~~l~~L~~L~L~~N~l~~------------~~~~~~~~~~ 225 (312)
T 1wwl_A 181 SDNPELGERGLIS--A---------------------LCPLKFPTLQVLALRNAGMET------------PSGVCSALAA 225 (312)
T ss_dssp CSCTTCHHHHHHH--H---------------------SCTTSCTTCCEEECTTSCCCC------------HHHHHHHHHH
T ss_pred CCCCcCcchHHHH--H---------------------HHhccCCCCCEEECCCCcCcc------------hHHHHHHHHh
Confidence 9887543211100 0 023567899999999985220 0011 1234
Q ss_pred cCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceecccccccccccccCCCCCchHHHH-HccCCCCCCCC
Q 037138 699 FAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKSIYWNALPSHIWKKL-IMGCAGLKKLP 777 (806)
Q Consensus 699 ~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~l-l~~c~~L~~L~ 777 (806)
.+++|+.|++++|.+. +..|. ..+..+++|++|+++++ +++.++.... +.|+.+ ++++ +++.+|
T Consensus 226 ~l~~L~~L~Ls~N~l~---------~~~~~--~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p 290 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLR---------DAAGA--PSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNP 290 (312)
T ss_dssp TTCCCSEEECTTSCCC---------SSCCC--SCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCC
T ss_pred cCCCCCEEECCCCcCC---------cccch--hhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCCh
Confidence 6799999999999872 22221 23445689999999984 4555553221 444444 4332 444443
Q ss_pred CCCCcccccceeEeeeecccCC
Q 037138 778 LDSNSRKEHRLVNRERRQKSGG 799 (806)
Q Consensus 778 l~~n~~~~~l~~i~~~~~~~~~ 799 (806)
. . ....+|+.+....+.+.+
T Consensus 291 ~-~-~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 291 S-P-DELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C-T-TTSCEEEEEECTTCTTTC
T ss_pred h-H-hhCCCCCEEeccCCCCCC
Confidence 3 1 123566677776666554
No 73
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=1.1e-16 Score=177.17 Aligned_cols=114 Identities=22% Similarity=0.355 Sum_probs=53.6
Q ss_pred EEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCcc
Q 037138 462 RISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIR 541 (806)
Q Consensus 462 ~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~ 541 (806)
.+.+.+|.+..+|.. +++|++|++++|.+..++.. .++|++|++++|.+ ..+| .++.+++|++|++++|.++
T Consensus 95 ~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l-~~lp-~~~~l~~L~~L~l~~N~l~ 166 (454)
T 1jl5_A 95 SLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQL-EKLP-ELQNSSFLKIIDVDNNSLK 166 (454)
T ss_dssp EEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSSCCS
T ss_pred EEEccCCcCCccccc--cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCC-CCCc-ccCCCCCCCEEECCCCcCc
Confidence 344444444443321 24455555555444433321 13555555555522 2344 3555555555555555555
Q ss_pred ccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCC
Q 037138 542 ELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYS 589 (806)
Q Consensus 542 ~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 589 (806)
.+|..+ .+|++|++++|. +..+|. ++++++|++|++++|.+.
T Consensus 167 ~lp~~~---~~L~~L~L~~n~-l~~l~~--~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 167 KLPDLP---PSLEFIAAGNNQ-LEELPE--LQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CCCCCC---TTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSSCCS
T ss_pred ccCCCc---ccccEEECcCCc-CCcCcc--ccCCCCCCEEECCCCcCC
Confidence 554332 355555555554 233442 455555555555555544
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=9.7e-17 Score=165.09 Aligned_cols=197 Identities=18% Similarity=0.219 Sum_probs=151.9
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCc-ccCCCCCCCEEEecCCC
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRP-GISKLVSLQYLNLSKTS 539 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~l~~L~~L~Ls~n~ 539 (806)
+.+...++.+..+|... .++++.|++++|.+..+++..|..+++|++|++++|.+ ..+|. .+..+++|++|++++|.
T Consensus 19 ~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 19 NSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEECCSSC
T ss_pred CEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEECCCCc
Confidence 45677778888877532 36899999999999999988899999999999999954 45554 46889999999999999
Q ss_pred ccccChh-hhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCee
Q 037138 540 IRELPKE-LKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVL 618 (806)
Q Consensus 540 l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 618 (806)
++.+|.. +..+++|++|++++|. +..+|...+..+++|++|++++|.+.+..+ ..+..+++|+.|
T Consensus 97 l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-------------~~~~~l~~L~~L 162 (270)
T 2o6q_A 97 LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPK-------------GVFDKLTSLKEL 162 (270)
T ss_dssp CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------------TTTTTCTTCCEE
T ss_pred CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCH-------------hHccCCccccee
Confidence 9988764 6899999999999998 566776668999999999999998875422 246778889988
Q ss_pred eEEecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCCCccc
Q 037138 619 TIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLV 698 (806)
Q Consensus 619 ~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~ 698 (806)
+++.|.+..+. ...+..+++|+.|+|++|.... + ....+.
T Consensus 163 ~L~~n~l~~~~---------------------------~~~~~~l~~L~~L~L~~N~l~~-~------------~~~~~~ 202 (270)
T 2o6q_A 163 RLYNNQLKRVP---------------------------EGAFDKLTELKTLKLDNNQLKR-V------------PEGAFD 202 (270)
T ss_dssp ECCSSCCSCCC---------------------------TTTTTTCTTCCEEECCSSCCSC-C------------CTTTTT
T ss_pred EecCCcCcEeC---------------------------hhHhccCCCcCEEECCCCcCCc-C------------CHHHhc
Confidence 88876553221 1135667888888888874211 0 011355
Q ss_pred cCCCcceEeeecCcc
Q 037138 699 FAPNLKSIHIANCHF 713 (806)
Q Consensus 699 ~l~~L~~L~L~~~~~ 713 (806)
.+++|+.|+|++|+.
T Consensus 203 ~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 203 SLEKLKMLQLQENPW 217 (270)
T ss_dssp TCTTCCEEECCSSCB
T ss_pred cccCCCEEEecCCCe
Confidence 678888888888875
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=4.2e-17 Score=164.60 Aligned_cols=211 Identities=17% Similarity=0.214 Sum_probs=146.0
Q ss_pred ecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccC-cccCCCCCCCEEEecC-CCcccc
Q 037138 466 MRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLR-PGISKLVSLQYLNLSK-TSIREL 543 (806)
Q Consensus 466 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~l~~L~~L~Ls~-n~l~~l 543 (806)
.+..+..+|. -.++|+.|++++|.++.+++..|..+++|++|++++|..++.+| ..+.++++|++|++++ |.++.+
T Consensus 19 ~c~~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 19 TCKDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp EECSCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred EccCccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 3444666665 34578888888888888888778888889999998885244444 4788888899999988 888877
Q ss_pred Ch-hhhcCCCCcEEecCCCccccccccccccCCCCCc---EEEeecc-cCCCCCCCCccccCCccchHHHhcCCCCCC-e
Q 037138 544 PK-ELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLH---VLRMVNC-DYSGKIPLDSILFGGCESLVEELISLKHLN-V 617 (806)
Q Consensus 544 p~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~-~ 617 (806)
|. .+.++++|++|++++|. +..+|. +..+++|+ +|++++| .+....+ ..+..+++|+ .
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~-------------~~~~~l~~L~~~ 160 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTG-LKMFPD--LTKVYSTDIFFILEITDNPYMTSIPV-------------NAFQGLCNETLT 160 (239)
T ss_dssp CTTSEECCTTCCEEEEEEEC-CCSCCC--CTTCCBCCSEEEEEEESCTTCCEECT-------------TTTTTTBSSEEE
T ss_pred CHHHhCCCCCCCEEeCCCCC-Cccccc--cccccccccccEEECCCCcchhhcCc-------------ccccchhcceeE
Confidence 74 57888888889888887 456776 77788887 8888888 5553211 2466777788 7
Q ss_pred eeEEecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCCCcc
Q 037138 618 LTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWL 697 (806)
Q Consensus 618 L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l 697 (806)
|+++.|.+..++ ...+.. ++|+.|++++|..+..+ ....+
T Consensus 161 L~l~~n~l~~i~---------------------------~~~~~~-~~L~~L~L~~n~~l~~i------------~~~~~ 200 (239)
T 2xwt_C 161 LKLYNNGFTSVQ---------------------------GYAFNG-TKLDAVYLNKNKYLTVI------------DKDAF 200 (239)
T ss_dssp EECCSCCCCEEC---------------------------TTTTTT-CEEEEEECTTCTTCCEE------------CTTTT
T ss_pred EEcCCCCCcccC---------------------------HhhcCC-CCCCEEEcCCCCCcccC------------CHHHh
Confidence 777766543221 012233 57888888877422111 01235
Q ss_pred ccC-CCcceEeeecCccchhhhcccccCccccccCCCCcccccceeccccccc
Q 037138 698 VFA-PNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPS 749 (806)
Q Consensus 698 ~~l-~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~ 749 (806)
..+ ++|+.|++++|.+ ..+|. ..|++|+.|+++++.+
T Consensus 201 ~~l~~~L~~L~l~~N~l----------~~l~~-----~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 201 GGVYSGPSLLDVSQTSV----------TALPS-----KGLEHLKELIARNTWT 238 (239)
T ss_dssp TTCSBCCSEEECTTCCC----------CCCCC-----TTCTTCSEEECTTC--
T ss_pred hccccCCcEEECCCCcc----------ccCCh-----hHhccCceeeccCccC
Confidence 567 8899999999887 45553 1577899999887654
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=7.2e-17 Score=167.55 Aligned_cols=195 Identities=22% Similarity=0.175 Sum_probs=121.9
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
+.+.+..+.+..+|... .++++.|++++|.+..+++..|..+++|++|+|++|. +..+|.. +.+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~Ls~N~l 89 (290)
T 1p9a_G 13 LEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDLSHNQL 89 (290)
T ss_dssp CEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEECCSSCC
T ss_pred cEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEECCCCcC
Confidence 44555566666665432 2567777777777777766667777777777777773 4444433 6677777777777777
Q ss_pred cccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeE
Q 037138 541 RELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTI 620 (806)
Q Consensus 541 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 620 (806)
+.+|..+..+++|++|++++|+ +..+|...|..+++|++|++++|.+....+ ..+..+++|+.|++
T Consensus 90 ~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-------------~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 90 QSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPP-------------GLLTPTPKLEKLSL 155 (290)
T ss_dssp SSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCT-------------TTTTTCTTCCEEEC
T ss_pred CcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccCh-------------hhcccccCCCEEEC
Confidence 7777777777777777777776 455655556777777777777776664322 23456666776666
Q ss_pred EecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCCCccccC
Q 037138 621 ALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFA 700 (806)
Q Consensus 621 ~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l 700 (806)
+.|.+..+. ...+..+++|+.|+|++|... ..+..+..+
T Consensus 156 ~~N~l~~l~---------------------------~~~~~~l~~L~~L~L~~N~l~--------------~ip~~~~~~ 194 (290)
T 1p9a_G 156 ANNNLTELP---------------------------AGLLNGLENLDTLLLQENSLY--------------TIPKGFFGS 194 (290)
T ss_dssp TTSCCSCCC---------------------------TTTTTTCTTCCEEECCSSCCC--------------CCCTTTTTT
T ss_pred CCCcCCccC---------------------------HHHhcCcCCCCEEECCCCcCC--------------ccChhhccc
Confidence 655443211 013455667777777776421 112344455
Q ss_pred CCcceEeeecCcc
Q 037138 701 PNLKSIHIANCHF 713 (806)
Q Consensus 701 ~~L~~L~L~~~~~ 713 (806)
++|+.|+|++|+.
T Consensus 195 ~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 195 HLLPFAFLHGNPW 207 (290)
T ss_dssp CCCSEEECCSCCB
T ss_pred ccCCeEEeCCCCc
Confidence 6777777777765
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=9.4e-17 Score=179.44 Aligned_cols=217 Identities=18% Similarity=0.147 Sum_probs=159.2
Q ss_pred ccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEEecCCCccccccccccccCCCCCcE
Q 037138 501 DFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHV 580 (806)
Q Consensus 501 ~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~ 580 (806)
..+++|++|+|++|.+.+..|..++.+++|++|+|++|.++.+++ ++.+++|++|++++|. +..+|. .++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~-----~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV-----GPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE-----CTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC-----CCCcCE
Confidence 345599999999997666667899999999999999999997665 9999999999999997 566664 389999
Q ss_pred EEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhchhhccccccceeccCCCCCcccc-cc
Q 037138 581 LRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNI-YS 659 (806)
Q Consensus 581 L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~-~~ 659 (806)
|++++|.+.+..+ ..+++|+.|+++.|.+.... +..+..+..+..|+...|...... ..
T Consensus 104 L~L~~N~l~~~~~----------------~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (487)
T 3oja_A 104 LHAANNNISRVSC----------------SRGQGKKNIYLANNKITMLR----DLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (487)
T ss_dssp EECCSSCCCCEEE----------------CCCSSCEEEECCSSCCCSGG----GBCGGGGSSEEEEECTTSCCCEEEGGG
T ss_pred EECcCCcCCCCCc----------------cccCCCCEEECCCCCCCCCC----chhhcCCCCCCEEECCCCCCCCcChHH
Confidence 9999999876422 34688999999999887653 233444556666666666555432 34
Q ss_pred cc-cccccceEeeccccCccccceeeecccCCcCCCCccccCCCcceEeeecCccchhhhcccccCccccccCCCCcccc
Q 037138 660 LA-DLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAK 738 (806)
Q Consensus 660 l~-~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~ 738 (806)
+. .+++|+.|+|++|... .++....+++|+.|+|++|.+ ..+|.. +..+++
T Consensus 164 l~~~l~~L~~L~Ls~N~l~---------------~~~~~~~l~~L~~L~Ls~N~l----------~~~~~~---~~~l~~ 215 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIY---------------DVKGQVVFAKLKTLDLSSNKL----------AFMGPE---FQSAAG 215 (487)
T ss_dssp GGGGTTTCCEEECTTSCCC---------------EEECCCCCTTCCEEECCSSCC----------CEECGG---GGGGTT
T ss_pred HhhhCCcccEEecCCCccc---------------cccccccCCCCCEEECCCCCC----------CCCCHh---HcCCCC
Confidence 44 6789999999988522 123334589999999999988 345543 456689
Q ss_pred cceecccccccccccccCCCCCchHHHHHccCCCCCCCCCCCCcc
Q 037138 739 LQYLHLRALPSLKSIYWNALPSHIWKKLIMGCAGLKKLPLDSNSR 783 (806)
Q Consensus 739 L~~L~L~~~~~L~~l~~~~~~~~~L~~ll~~c~~L~~L~l~~n~~ 783 (806)
|+.|+|+++ .+..++.. +..+++|+.|++++|..
T Consensus 216 L~~L~Ls~N-~l~~lp~~----------l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 216 VTWISLRNN-KLVLIEKA----------LRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CSEEECTTS-CCCEECTT----------CCCCTTCCEEECTTCCB
T ss_pred ccEEEecCC-cCcccchh----------hccCCCCCEEEcCCCCC
Confidence 999999983 34443321 24556777777777664
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=1.2e-16 Score=164.66 Aligned_cols=181 Identities=18% Similarity=0.289 Sum_probs=127.3
Q ss_pred CCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChh-hhcCCCC
Q 037138 475 DTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKE-LKALVNL 553 (806)
Q Consensus 475 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L 553 (806)
....+++|+.|++++|.+..++. +..+++|++|++++|.+ ..++ .++.+++|++|++++|.++.+|.. ++++++|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKL-HDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCC-CCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCC-CCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 34567788888888888776654 77888999999998844 4444 788888999999999988877654 6888999
Q ss_pred cEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhh
Q 037138 554 KYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLS 633 (806)
Q Consensus 554 ~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 633 (806)
++|++++|. +..+|...++.+++|++|++++|.+.+..+ ..+..+++|+.|+++.|.+..+.
T Consensus 112 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------~~~~~l~~L~~L~l~~n~l~~~~---- 173 (272)
T 3rfs_A 112 KELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPK-------------GVFDKLTNLTELDLSYNQLQSLP---- 173 (272)
T ss_dssp CEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------------TTTTTCTTCCEEECCSSCCCCCC----
T ss_pred CEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCH-------------HHhccCccCCEEECCCCCcCccC----
Confidence 999999887 456666657888899999998888775432 24567788888888776554221
Q ss_pred chhhccccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCCCccccCCCcceEeeecCcc
Q 037138 634 SHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFAPNLKSIHIANCHF 713 (806)
Q Consensus 634 ~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~~~~ 713 (806)
...+..+++|+.|++++|.... + .+..+..+++|+.|++++|..
T Consensus 174 -----------------------~~~~~~l~~L~~L~L~~N~l~~------------~-~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 174 -----------------------EGVFDKLTQLKDLRLYQNQLKS------------V-PDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp -----------------------TTTTTTCTTCCEEECCSSCCSC------------C-CTTTTTTCTTCCEEECCSSCB
T ss_pred -----------------------HHHhcCCccCCEEECCCCcCCc------------c-CHHHHhCCcCCCEEEccCCCc
Confidence 0134556777777777764211 0 012345667777777777765
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=2.4e-16 Score=163.55 Aligned_cols=170 Identities=23% Similarity=0.234 Sum_probs=142.1
Q ss_pred EEEeeecccccccC--CCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCC
Q 037138 461 RRISLMRNKIEKLS--DTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKT 538 (806)
Q Consensus 461 ~~ls~~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n 538 (806)
+.+.+.+|.+..++ ....+++|+.|++++|.++.++.. ..+++|++|++++| .+..+|..+..+++|++|++++|
T Consensus 34 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN 110 (290)
T ss_dssp CEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS
T ss_pred CEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC
Confidence 77888888887764 347899999999999999888763 78999999999999 56788999999999999999999
Q ss_pred CccccC-hhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCe
Q 037138 539 SIRELP-KELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNV 617 (806)
Q Consensus 539 ~l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 617 (806)
.++.+| ..+..+++|++|++++|+ +..+|...+..+++|+.|++++|.+....+ ..+..+++|+.
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-------------~~~~~l~~L~~ 176 (290)
T 1p9a_G 111 RLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPA-------------GLLNGLENLDT 176 (290)
T ss_dssp CCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCCT-------------TTTTTCTTCCE
T ss_pred cCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCccCH-------------HHhcCcCCCCE
Confidence 999887 468999999999999998 577888778999999999999999875422 34678999999
Q ss_pred eeEEecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeecccc
Q 037138 618 LTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCR 675 (806)
Q Consensus 618 L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 675 (806)
|+++.|.+..++ ..+..+.+|+.|+|++|+
T Consensus 177 L~L~~N~l~~ip----------------------------~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 177 LLLQENSLYTIP----------------------------KGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EECCSSCCCCCC----------------------------TTTTTTCCCSEEECCSCC
T ss_pred EECCCCcCCccC----------------------------hhhcccccCCeEEeCCCC
Confidence 999888765322 123345678899998886
No 80
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.67 E-value=5.2e-16 Score=176.99 Aligned_cols=226 Identities=21% Similarity=0.218 Sum_probs=167.6
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
+.+.+.+|.+..+|. .+++|++|++++|.++.+|. .+++|++|++++| .+..+|. .+++|++|++++|.+
T Consensus 64 ~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~N~l 133 (622)
T 3g06_A 64 TTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFGNQL 133 (622)
T ss_dssp SEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCSSCC
T ss_pred cEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCCCCC
Confidence 678899999998886 68999999999999988876 6899999999999 5666776 678999999999999
Q ss_pred cccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeE
Q 037138 541 RELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTI 620 (806)
Q Consensus 541 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 620 (806)
+.+|.. +++|++|++++|. +..+|. .+++|+.|++++|.+... | ..+++|+.|++
T Consensus 134 ~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~~l-~----------------~~~~~L~~L~L 188 (622)
T 3g06_A 134 TSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLTSL-P----------------MLPSGLQELSV 188 (622)
T ss_dssp SCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSCC-C----------------CCCTTCCEEEC
T ss_pred CcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCCCC-c----------------ccCCCCcEEEC
Confidence 999975 4899999999997 566775 357899999999988753 1 34678999999
Q ss_pred EecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCc------cccceeeecccCCcCCC
Q 037138 621 ALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNL------EEFKKVMIDFCIKLREV 694 (806)
Q Consensus 621 ~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~------~~L~~L~l~~c~~l~~~ 694 (806)
+.|.+..++.. ...++ .|...+|...... ..+++|+.|++++|... ..|+.|+++++ .++.+
T Consensus 189 s~N~l~~l~~~------~~~L~--~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N-~L~~l 256 (622)
T 3g06_A 189 SDNQLASLPTL------PSELY--KLWAYNNRLTSLP---ALPSGLKELIVSGNRLTSLPVLPSELKELMVSGN-RLTSL 256 (622)
T ss_dssp CSSCCSCCCCC------CTTCC--EEECCSSCCSSCC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCC
T ss_pred CCCCCCCCCCc------cchhh--EEECcCCcccccC---CCCCCCCEEEccCCccCcCCCCCCcCcEEECCCC-CCCcC
Confidence 98887654321 12233 3333333332211 12478899999888543 23778888776 44445
Q ss_pred CccccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceecccccc
Q 037138 695 TWLVFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALP 748 (806)
Q Consensus 695 ~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~ 748 (806)
+. .+++|+.|+|++|.+ ..+|.. +..+++|+.|+|++++
T Consensus 257 p~--~~~~L~~L~Ls~N~L----------~~lp~~---l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 257 PM--LPSGLLSLSVYRNQL----------TRLPES---LIHLSSETTVNLEGNP 295 (622)
T ss_dssp CC--CCTTCCEEECCSSCC----------CSCCGG---GGGSCTTCEEECCSCC
T ss_pred Cc--ccccCcEEeCCCCCC----------CcCCHH---HhhccccCEEEecCCC
Confidence 44 578889999998877 456653 4456788888888743
No 81
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=1.9e-17 Score=184.98 Aligned_cols=157 Identities=18% Similarity=0.190 Sum_probs=78.3
Q ss_pred EEEeeecccccccCC---CCCCCccccccccccchhcc----hhHhhccCCcccEEEccCCCcccccCccc-CCCC----
Q 037138 461 RRISLMRNKIEKLSD---TPTCPHLLSLFPNINRLKTI----ARRFFDFMPSLTVLNLSNNGFLTKLRPGI-SKLV---- 528 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~---~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i-~~l~---- 528 (806)
+++.+.++.+...+. ...+++|++|++++|.+... .+..+..+++|++|+|++|.+....+..+ ..+.
T Consensus 6 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~ 85 (461)
T 1z7x_W 6 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC 85 (461)
T ss_dssp EEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTC
T ss_pred eehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCC
Confidence 445555554433211 23455666666666655432 12335556666666666664333222222 1233
Q ss_pred CCCEEEecCCCcc-----ccChhhhcCCCCcEEecCCCcccccccc----ccccCCCCCcEEEeecccCCCCCCCCcccc
Q 037138 529 SLQYLNLSKTSIR-----ELPKELKALVNLKYLNLEHSRYLHTIPR----QLICSFSMLHVLRMVNCDYSGKIPLDSILF 599 (806)
Q Consensus 529 ~L~~L~Ls~n~l~-----~lp~~i~~L~~L~~L~L~~~~~l~~lp~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 599 (806)
+|++|++++|.++ .+|..+..+++|++|++++|.+....+. ......++|++|++++|.+....
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~------- 158 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS------- 158 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG-------
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH-------
Confidence 4666666666665 3455566666666666666653221111 11222445666666666554320
Q ss_pred CCccchHHHhcCCCCCCeeeEEecchh
Q 037138 600 GGCESLVEELISLKHLNVLTIALKSFF 626 (806)
Q Consensus 600 ~~~~~~~~~l~~L~~L~~L~l~~~~~~ 626 (806)
.......+..+++|+.|+++.|.+.
T Consensus 159 --~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 159 --CEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp --HHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred --HHHHHHHHhhCCCCCEEECcCCCcc
Confidence 1122344555566666666665543
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=1.4e-16 Score=165.51 Aligned_cols=172 Identities=24% Similarity=0.363 Sum_probs=127.0
Q ss_pred CCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCc
Q 037138 475 DTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLK 554 (806)
Q Consensus 475 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~ 554 (806)
....+++|+.|++++|.+..++. +..+++|++|++++|. +..++. +..+++|++|++++|.++.+|. +..+++|+
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 115 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLK 115 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCC
T ss_pred chhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCC
Confidence 33457788888888888877754 7788888888888884 444554 8888888888888888887764 88888888
Q ss_pred EEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhc
Q 037138 555 YLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSS 634 (806)
Q Consensus 555 ~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 634 (806)
+|++++|. +..++. +..+++|++|++++|.+.+. ..+..+++|+.|+++.|.+..+.
T Consensus 116 ~L~L~~n~-i~~~~~--l~~l~~L~~L~l~~n~l~~~---------------~~l~~l~~L~~L~L~~N~l~~~~----- 172 (291)
T 1h6t_A 116 SLSLEHNG-ISDING--LVHLPQLESLYLGNNKITDI---------------TVLSRLTKLDTLSLEDNQISDIV----- 172 (291)
T ss_dssp EEECTTSC-CCCCGG--GGGCTTCCEEECCSSCCCCC---------------GGGGGCTTCSEEECCSSCCCCCG-----
T ss_pred EEECCCCc-CCCChh--hcCCCCCCEEEccCCcCCcc---------------hhhccCCCCCEEEccCCccccch-----
Confidence 88888887 455653 77888888888888877643 35677888888888766554321
Q ss_pred hhhccccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCCCccccCCCcceEeeecCcc
Q 037138 635 HELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFAPNLKSIHIANCHF 713 (806)
Q Consensus 635 ~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~~~~ 713 (806)
.+..+++|+.|++++|. ++.++.+..+++|+.|++++|..
T Consensus 173 ------------------------~l~~l~~L~~L~L~~N~---------------i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 173 ------------------------PLAGLTKLQNLYLSKNH---------------ISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp ------------------------GGTTCTTCCEEECCSSC---------------CCBCGGGTTCTTCSEEEEEEEEE
T ss_pred ------------------------hhcCCCccCEEECCCCc---------------CCCChhhccCCCCCEEECcCCcc
Confidence 24556788888888874 22234566788888888888876
No 83
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=6e-17 Score=180.83 Aligned_cols=296 Identities=17% Similarity=0.127 Sum_probs=177.6
Q ss_pred ccccccccccchhc----chhHhhccCCcccEEEccCCCcccccCccc-----CCCCCCCEEEecCCCccc-----cChh
Q 037138 481 HLLSLFPNINRLKT----IARRFFDFMPSLTVLNLSNNGFLTKLRPGI-----SKLVSLQYLNLSKTSIRE-----LPKE 546 (806)
Q Consensus 481 ~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i-----~~l~~L~~L~Ls~n~l~~-----lp~~ 546 (806)
+|++|++++|.++. ..+..+..+++|++|++++|.+....+..+ ..+++|++|++++|.++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 68888888887763 234557788888888888885433322222 235578888888887773 4566
Q ss_pred hhcCCCCcEEecCCCccccccccc----cccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEe
Q 037138 547 LKALVNLKYLNLEHSRYLHTIPRQ----LICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIAL 622 (806)
Q Consensus 547 i~~L~~L~~L~L~~~~~l~~lp~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 622 (806)
+..+++|++|++++|.+....+.. +...+++|++|++++|.+... +.......+..+++|+.|+++.
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~---------~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD---------NCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT---------HHHHHHHHHHHCTTCCEEECCS
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH---------HHHHHHHHHHhCCCccEEeccC
Confidence 777788888888888743222221 111356888888888876642 1112345677788899999988
Q ss_pred cchhhHHHhhhchhh-ccccccceeccCCCCCccc-----ccccccccccceEeeccccCc---------------cccc
Q 037138 623 KSFFALQRFLSSHEL-QNCTKSLNLRYYDDSKSFN-----IYSLADLKHLDKLDLIYCRNL---------------EEFK 681 (806)
Q Consensus 623 ~~~~~~~~~~~~~~l-~~~~~~l~L~~~~~~~~~~-----~~~l~~l~~L~~L~L~~~~~~---------------~~L~ 681 (806)
|.+...........+ ..+..+..|+...+..... ...+..+++|++|++++|... ..|+
T Consensus 237 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 316 (461)
T 1z7x_W 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCC
T ss_pred CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccce
Confidence 876543211101111 1233444555444433321 124556788999999988642 2588
Q ss_pred eeeecccCCcCC-----CCccccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceecccccccccccccC
Q 037138 682 KVMIDFCIKLRE-----VTWLVFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKSIYWN 756 (806)
Q Consensus 682 ~L~l~~c~~l~~-----~~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~~~ 756 (806)
.|.+++|..... +.++..+++|+.|+|++|.+....+. .+...+. ...++|++|++++|. +..-
T Consensus 317 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~-----~l~~~l~--~~~~~L~~L~L~~n~-i~~~--- 385 (461)
T 1z7x_W 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR-----ELCQGLG--QPGSVLRVLWLADCD-VSDS--- 385 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH-----HHHHHHT--STTCCCCEEECTTSC-CCHH---
T ss_pred eeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH-----HHHHHHc--CCCCceEEEECCCCC-CChh---
Confidence 888888763322 23456679999999999976322111 1111111 124689999998852 2110
Q ss_pred CCCCchHHHHHccCCCCCCCCCCCCcccc---------------cceeEeeeecccC
Q 037138 757 ALPSHIWKKLIMGCAGLKKLPLDSNSRKE---------------HRLVNRERRQKSG 798 (806)
Q Consensus 757 ~~~~~~L~~ll~~c~~L~~L~l~~n~~~~---------------~l~~i~~~~~~~~ 798 (806)
....+...+..|++|+.|++++|.+.. .++.+...+..|+
T Consensus 386 --~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 386 --SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp --HHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred --hHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 001222226789999999999997532 4666666655554
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=9.4e-16 Score=155.81 Aligned_cols=174 Identities=18% Similarity=0.217 Sum_probs=142.5
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
+.+...++.+..+|... .++++.|++++|.+..+++..|..+++|++|+|++|.+.+..|..+..+++|++|+|++|.+
T Consensus 17 ~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95 (251)
T ss_dssp TEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred eEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence 35667777888887543 37899999999999999888899999999999999976666677789999999999999999
Q ss_pred cccCh-hhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeee
Q 037138 541 RELPK-ELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLT 619 (806)
Q Consensus 541 ~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 619 (806)
+.+|. .+..+++|++|++++|. +..+|...+..+++|++|++++|.+.+..+ ..+..+++|+.|+
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------------~~~~~l~~L~~L~ 161 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPA-------------GAFDKLTNLQTLS 161 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------------TTTTTCTTCCEEE
T ss_pred cccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCH-------------HHcCcCcCCCEEE
Confidence 98875 56899999999999998 567887768899999999999998875433 3577889999999
Q ss_pred EEecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccC
Q 037138 620 IALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRN 676 (806)
Q Consensus 620 l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 676 (806)
++.|.+..+. ...+..+++|+.|+|++|+.
T Consensus 162 L~~N~l~~~~---------------------------~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 162 LSTNQLQSVP---------------------------HGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCSSCCSCCC---------------------------TTTTTTCTTCCEEECCSCCB
T ss_pred CCCCcCCccC---------------------------HHHHhCCCCCCEEEeeCCce
Confidence 9887664321 11466778899999998863
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=3.4e-16 Score=166.82 Aligned_cols=204 Identities=18% Similarity=0.157 Sum_probs=97.4
Q ss_pred CcccEEEccCCCcccccCcccCCCCCCCEEEecCCCcc-c-cChhhhcCCCCcEEecCCCccccccccccccCCCCCcEE
Q 037138 504 PSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIR-E-LPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVL 581 (806)
Q Consensus 504 ~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~-~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L 581 (806)
+++++|++++|.+.+ .+..+..+++|++|++++|.++ . +|..+..+++|++|++++|.+....|.. ++.+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~-~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQ-PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECS-CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEE
T ss_pred ccceEEEcCCccccc-cchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEE
Confidence 455555555552222 2223444555555555555544 1 4444555555555555555433333333 4455555555
Q ss_pred Eeecc-cCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEec-chhhHHHhhhchhhcccc-ccceeccCCCC--Cc-c
Q 037138 582 RMVNC-DYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALK-SFFALQRFLSSHELQNCT-KSLNLRYYDDS--KS-F 655 (806)
Q Consensus 582 ~l~~~-~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~-~~~~~~~~~~~~~l~~~~-~~l~L~~~~~~--~~-~ 655 (806)
++++| .+.+. .....+..+++|+.|+++.| .+..... ...+..+. .+..|....+. .. .
T Consensus 148 ~L~~~~~l~~~------------~l~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~l~~~L~~L~l~~~~~~~~~~ 212 (336)
T 2ast_B 148 NLSGCSGFSEF------------ALQTLLSSCSRLDELNLSWCFDFTEKHV---QVAVAHVSETITQLNLSGYRKNLQKS 212 (336)
T ss_dssp ECTTCBSCCHH------------HHHHHHHHCTTCCEEECCCCTTCCHHHH---HHHHHHSCTTCCEEECCSCGGGSCHH
T ss_pred ECCCCCCCCHH------------HHHHHHhcCCCCCEEcCCCCCCcChHHH---HHHHHhcccCCCEEEeCCCcccCCHH
Confidence 55555 22210 11223444555555555544 3332100 00011111 11122221110 00 0
Q ss_pred c-ccccccccccceEeeccccCccccceeeecccCCcCCCCccccCCCcceEeeecCccchhhhcccccCccccccCCCC
Q 037138 656 N-IYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLK 734 (806)
Q Consensus 656 ~-~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~ 734 (806)
. ...+..+++|+.|++++|..++ -..+..+..+++|++|+|++|..+ .+..+..+.
T Consensus 213 ~l~~~~~~~~~L~~L~l~~~~~l~------------~~~~~~l~~l~~L~~L~l~~~~~~-----------~~~~~~~l~ 269 (336)
T 2ast_B 213 DLSTLVRRCPNLVHLDLSDSVMLK------------NDCFQEFFQLNYLQHLSLSRCYDI-----------IPETLLELG 269 (336)
T ss_dssp HHHHHHHHCTTCSEEECTTCTTCC------------GGGGGGGGGCTTCCEEECTTCTTC-----------CGGGGGGGG
T ss_pred HHHHHHhhCCCCCEEeCCCCCcCC------------HHHHHHHhCCCCCCEeeCCCCCCC-----------CHHHHHHHh
Confidence 0 1134456777777777765211 112345677899999999999632 122222455
Q ss_pred cccccceeccccc
Q 037138 735 PFAKLQYLHLRAL 747 (806)
Q Consensus 735 ~~~~L~~L~L~~~ 747 (806)
.+|+|+.|++++|
T Consensus 270 ~~~~L~~L~l~~~ 282 (336)
T 2ast_B 270 EIPTLKTLQVFGI 282 (336)
T ss_dssp GCTTCCEEECTTS
T ss_pred cCCCCCEEeccCc
Confidence 6789999999987
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=1.3e-15 Score=157.40 Aligned_cols=201 Identities=20% Similarity=0.183 Sum_probs=153.5
Q ss_pred EEEEeeecccccccCC--CCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecC
Q 037138 460 RRRISLMRNKIEKLSD--TPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSK 537 (806)
Q Consensus 460 ~~~ls~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~ 537 (806)
.+.+.+.++.+..++. ..++++|++|++++|.+..+++..|..+++|++|++++|.+.+..|..+.++++|++|++++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 109 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence 3788888998888763 47899999999999999999988899999999999999966666667899999999999999
Q ss_pred CCccccCh-hhhcCCCCcEEecCCCcccc-ccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCC
Q 037138 538 TSIRELPK-ELKALVNLKYLNLEHSRYLH-TIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHL 615 (806)
Q Consensus 538 n~l~~lp~-~i~~L~~L~~L~L~~~~~l~-~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 615 (806)
|.+..++. .++.+++|++|++++|.+.. .+|.. +..+++|++|++++|.+.+..+ .....+..++.|
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~----------~~~~~l~~L~~l 178 (276)
T 2z62_A 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC----------TDLRVLHQMPLL 178 (276)
T ss_dssp SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECG----------GGGHHHHTCTTC
T ss_pred CCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCCH----------HHhhhhhhcccc
Confidence 99998776 68999999999999998533 25765 8999999999999998875422 223445555555
Q ss_pred C-eeeEEecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCC
Q 037138 616 N-VLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREV 694 (806)
Q Consensus 616 ~-~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~ 694 (806)
. .|+++.|.+..+. +......+|+.|++++|... ..+
T Consensus 179 ~l~L~ls~n~l~~~~----------------------------~~~~~~~~L~~L~L~~n~l~--------------~~~ 216 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQ----------------------------PGAFKEIRLKELALDTNQLK--------------SVP 216 (276)
T ss_dssp CEEEECCSSCCCEEC----------------------------TTSSCSCCEEEEECCSSCCS--------------CCC
T ss_pred ceeeecCCCcccccC----------------------------ccccCCCcccEEECCCCcee--------------ecC
Confidence 4 5666655443221 11222347888888887521 111
Q ss_pred -CccccCCCcceEeeecCcc
Q 037138 695 -TWLVFAPNLKSIHIANCHF 713 (806)
Q Consensus 695 -~~l~~l~~L~~L~L~~~~~ 713 (806)
..+..+++|+.|+|++|++
T Consensus 217 ~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 217 DGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp TTTTTTCCSCCEEECCSSCB
T ss_pred HhHhcccccccEEEccCCcc
Confidence 2356789999999999988
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=3.3e-16 Score=162.70 Aligned_cols=190 Identities=17% Similarity=0.236 Sum_probs=149.9
Q ss_pred CCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEEe
Q 037138 478 TCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYLN 557 (806)
Q Consensus 478 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~ 557 (806)
.+.++..+.+..+.+..+.. +..+++|++|++++| .+..+| .+..+++|++|++++|.++.+|. +..+++|++|+
T Consensus 22 ~l~~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~ 96 (291)
T 1h6t_A 22 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLF 96 (291)
T ss_dssp HHHHHHHHHTTCSCTTSEEC--HHHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred HHHHHHHHHhcCCCcccccc--hhhcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEE
Confidence 34455566666666665543 467889999999999 556665 58899999999999999999887 99999999999
Q ss_pred cCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhchhh
Q 037138 558 LEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSHEL 637 (806)
Q Consensus 558 L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l 637 (806)
+++|. +..+|. +..+++|++|++++|.+.+. ..+..+++|+.|+++.|.+..+
T Consensus 97 l~~n~-l~~~~~--l~~l~~L~~L~L~~n~i~~~---------------~~l~~l~~L~~L~l~~n~l~~~--------- 149 (291)
T 1h6t_A 97 LDENK-VKDLSS--LKDLKKLKSLSLEHNGISDI---------------NGLVHLPQLESLYLGNNKITDI--------- 149 (291)
T ss_dssp CCSSC-CCCGGG--GTTCTTCCEEECTTSCCCCC---------------GGGGGCTTCCEEECCSSCCCCC---------
T ss_pred CCCCc-CCCChh--hccCCCCCEEECCCCcCCCC---------------hhhcCCCCCCEEEccCCcCCcc---------
Confidence 99998 566765 89999999999999988753 3578899999999987765432
Q ss_pred ccccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCCCccccCCCcceEeeecCccchhh
Q 037138 638 QNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFAPNLKSIHIANCHFMQEI 717 (806)
Q Consensus 638 ~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~~~~~~~i 717 (806)
+.+..+++|+.|++++|.. +.++.+..+++|+.|++++|.+
T Consensus 150 --------------------~~l~~l~~L~~L~L~~N~l---------------~~~~~l~~l~~L~~L~L~~N~i---- 190 (291)
T 1h6t_A 150 --------------------TVLSRLTKLDTLSLEDNQI---------------SDIVPLAGLTKLQNLYLSKNHI---- 190 (291)
T ss_dssp --------------------GGGGGCTTCSEEECCSSCC---------------CCCGGGTTCTTCCEEECCSSCC----
T ss_pred --------------------hhhccCCCCCEEEccCCcc---------------ccchhhcCCCccCEEECCCCcC----
Confidence 1466788999999998842 2233377889999999999987
Q ss_pred hcccccCccccccCCCCcccccceecccccc
Q 037138 718 ISARKLGEVPELIGNLKPFAKLQYLHLRALP 748 (806)
Q Consensus 718 ~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~ 748 (806)
..+| .+..+++|+.|++++++
T Consensus 191 ------~~l~----~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 191 ------SDLR----ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp ------CBCG----GGTTCTTCSEEEEEEEE
T ss_pred ------CCCh----hhccCCCCCEEECcCCc
Confidence 3454 35667899999999853
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=5.3e-16 Score=176.76 Aligned_cols=129 Identities=26% Similarity=0.415 Sum_probs=90.8
Q ss_pred CCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCc
Q 037138 475 DTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLK 554 (806)
Q Consensus 475 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~ 554 (806)
....+++|+.|++++|.+..++. +..+++|+.|+|++|. +..+|. +..+++|++|+|++|.+..+| .+..|++|+
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLK 112 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCC
T ss_pred chhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCC
Confidence 33456777777887777776653 6777888888888774 444443 777788888888888777766 577778888
Q ss_pred EEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchh
Q 037138 555 YLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFF 626 (806)
Q Consensus 555 ~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 626 (806)
+|+|++|. +..+|. +..+++|+.|++++|.+.+. ..+..+++|+.|+++.|.+.
T Consensus 113 ~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~l---------------~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 113 SLSLEHNG-ISDING--LVHLPQLESLYLGNNKITDI---------------TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp EEECTTSC-CCCCGG--GGGCTTCSEEECCSSCCCCC---------------GGGGSCTTCSEEECCSSCCC
T ss_pred EEEecCCC-CCCCcc--ccCCCccCEEECCCCccCCc---------------hhhcccCCCCEEECcCCcCC
Confidence 88888776 445554 67778888888887776643 35667777777777766554
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=6.3e-16 Score=155.92 Aligned_cols=194 Identities=13% Similarity=0.246 Sum_probs=150.3
Q ss_pred EEEeeecccccccCC--CCCCCccccccccccc-hhcchhHhhccCCcccEEEccC-CCcccccCcccCCCCCCCEEEec
Q 037138 461 RRISLMRNKIEKLSD--TPTCPHLLSLFPNINR-LKTIARRFFDFMPSLTVLNLSN-NGFLTKLRPGISKLVSLQYLNLS 536 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~--~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~-~~~~~~lp~~i~~l~~L~~L~Ls 536 (806)
+.+.+.++.+..++. ..++++|++|++++|. ++.+++..|..+++|++|++++ |.+.+..+..+..+++|++|+++
T Consensus 34 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~ 113 (239)
T 2xwt_C 34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113 (239)
T ss_dssp CEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEE
T ss_pred cEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCC
Confidence 678889999988875 4789999999999997 9999988899999999999998 74444444678999999999999
Q ss_pred CCCccccChhhhcCCCCc---EEecCCCccccccccccccCCCCCc-EEEeecccCCCCCCCCccccCCccchHHHhcCC
Q 037138 537 KTSIRELPKELKALVNLK---YLNLEHSRYLHTIPRQLICSFSMLH-VLRMVNCDYSGKIPLDSILFGGCESLVEELISL 612 (806)
Q Consensus 537 ~n~l~~lp~~i~~L~~L~---~L~L~~~~~l~~lp~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 612 (806)
+|.++.+|. +..+++|+ +|++++|..+..+|...+..+++|+ +|++++|.+. .+|. ..+..
T Consensus 114 ~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~------------~~~~~- 178 (239)
T 2xwt_C 114 NTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG------------YAFNG- 178 (239)
T ss_dssp EECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT------------TTTTT-
T ss_pred CCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH------------hhcCC-
Confidence 999999997 88889998 9999999336788877789999999 9999999876 3331 12222
Q ss_pred CCCCeeeEEecc-hhhHHHhhhchhhccccccceeccCCCCCcccccccccc-cccceEeeccccCccccceeeecccCC
Q 037138 613 KHLNVLTIALKS-FFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADL-KHLDKLDLIYCRNLEEFKKVMIDFCIK 690 (806)
Q Consensus 613 ~~L~~L~l~~~~-~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l-~~L~~L~L~~~~~~~~L~~L~l~~c~~ 690 (806)
++|+.|+++.|. +..+ ....+..+ ++|+.|++++|..
T Consensus 179 ~~L~~L~L~~n~~l~~i---------------------------~~~~~~~l~~~L~~L~l~~N~l-------------- 217 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVI---------------------------DKDAFGGVYSGPSLLDVSQTSV-------------- 217 (239)
T ss_dssp CEEEEEECTTCTTCCEE---------------------------CTTTTTTCSBCCSEEECTTCCC--------------
T ss_pred CCCCEEEcCCCCCcccC---------------------------CHHHhhccccCCcEEECCCCcc--------------
Confidence 677777776552 3221 11246667 8899999998742
Q ss_pred cCCCCccccCCCcceEeeecCc
Q 037138 691 LREVTWLVFAPNLKSIHIANCH 712 (806)
Q Consensus 691 l~~~~~l~~l~~L~~L~L~~~~ 712 (806)
+.++. ..+++|+.|+++++.
T Consensus 218 -~~l~~-~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 218 -TALPS-KGLEHLKELIARNTW 237 (239)
T ss_dssp -CCCCC-TTCTTCSEEECTTC-
T ss_pred -ccCCh-hHhccCceeeccCcc
Confidence 12221 157889999998874
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=5.8e-16 Score=176.45 Aligned_cols=192 Identities=18% Similarity=0.202 Sum_probs=133.8
Q ss_pred CCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEE
Q 037138 477 PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYL 556 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L 556 (806)
..+..+..+.+..+.+..+.. +..+++|+.|++++| .+..+| .+..|++|++|+|++|.+..+|. +..|++|+.|
T Consensus 18 ~~l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L 92 (605)
T 1m9s_A 18 DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEE
T ss_pred HHHHHHHHHhccCCCcccccc--hhcCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEE
Confidence 445566777777777776655 577899999999999 566666 68999999999999999998887 9999999999
Q ss_pred ecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhchh
Q 037138 557 NLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSHE 636 (806)
Q Consensus 557 ~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~ 636 (806)
+|++|. +..+|. +..+++|+.|++++|.+... ..+..+++|+.|+++.|.+..+. .
T Consensus 93 ~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~l---------------~~l~~l~~L~~L~Ls~N~l~~l~------~ 148 (605)
T 1m9s_A 93 FLDENK-IKDLSS--LKDLKKLKSLSLEHNGISDI---------------NGLVHLPQLESLYLGNNKITDIT------V 148 (605)
T ss_dssp ECCSSC-CCCCTT--STTCTTCCEEECTTSCCCCC---------------GGGGGCTTCSEEECCSSCCCCCG------G
T ss_pred ECcCCC-CCCChh--hccCCCCCEEEecCCCCCCC---------------ccccCCCccCEEECCCCccCCch------h
Confidence 999998 566774 89999999999999988753 35788999999999988765432 1
Q ss_pred hccccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCCCccccCCCcceEeeecCcc
Q 037138 637 LQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFAPNLKSIHIANCHF 713 (806)
Q Consensus 637 l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~~~~ 713 (806)
+..+..+..|+...|......+ +..+++|+.|+|++|. +..++.+..+++|+.|+|++|.+
T Consensus 149 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~---------------i~~l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 149 LSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH---------------ISDLRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp GGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC---------------CCBCGGGTTCTTCSEEECCSEEE
T ss_pred hcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC---------------CCCChHHccCCCCCEEEccCCcC
Confidence 2223333333333333222222 4444555555555442 11123344555566666665554
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=4.2e-15 Score=158.96 Aligned_cols=231 Identities=15% Similarity=0.119 Sum_probs=163.8
Q ss_pred EEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCc-ccCCCCCCCE-EEecCCC
Q 037138 462 RISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRP-GISKLVSLQY-LNLSKTS 539 (806)
Q Consensus 462 ~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~l~~L~~-L~Ls~n~ 539 (806)
.+.-.++.++.+|... .++++.|++++|.++.+++..|.++++|++|+|++|.+.+.+|. .|.++++|+. +.+++|+
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 3455567788887532 46899999999999999998899999999999999977676764 5788988876 5666789
Q ss_pred ccccC-hhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCC-CCCCe
Q 037138 540 IRELP-KELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISL-KHLNV 617 (806)
Q Consensus 540 l~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~ 617 (806)
++.+| ..+..+++|++|++++|. +..+|...+....++..|++.++.....++. ..+..+ ..++.
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~------------~~f~~~~~~l~~ 158 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIER------------NSFVGLSFESVI 158 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECT------------TSSTTSBSSCEE
T ss_pred ccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccc------------cchhhcchhhhh
Confidence 99885 567999999999999998 5667765466677888898877544333331 123344 46788
Q ss_pred eeEEecchhhHHHhhhchhhccccccceeccCC--CCCcccccccccccccceEeeccccCcc-------ccceeeeccc
Q 037138 618 LTIALKSFFALQRFLSSHELQNCTKSLNLRYYD--DSKSFNIYSLADLKHLDKLDLIYCRNLE-------EFKKVMIDFC 688 (806)
Q Consensus 618 L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~--~~~~~~~~~l~~l~~L~~L~L~~~~~~~-------~L~~L~l~~c 688 (806)
|+++.|.+..+.. ......++..+.... .....+...+..+++|+.|+|++|.... .|+.|.+.++
T Consensus 159 L~L~~N~i~~i~~-----~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 159 LWLNKNGIQEIHN-----SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233 (350)
T ss_dssp EECCSSCCCEECT-----TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC
T ss_pred hccccccccCCCh-----hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC
Confidence 9999888876532 122334555555543 2333333467899999999999985322 2666666666
Q ss_pred CCcCCCCccccCCCcceEeeecC
Q 037138 689 IKLREVTWLVFAPNLKSIHIANC 711 (806)
Q Consensus 689 ~~l~~~~~l~~l~~L~~L~L~~~ 711 (806)
..++.+|.+..+++|+.+++.++
T Consensus 234 ~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 234 YNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCCCCCCTTTCCSCCEEECSCH
T ss_pred CCcCcCCCchhCcChhhCcCCCC
Confidence 66666666666666776666544
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=1.8e-15 Score=159.07 Aligned_cols=112 Identities=19% Similarity=0.066 Sum_probs=46.8
Q ss_pred CCCccccccccccchhcc----hhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccc---cCh--hhh
Q 037138 478 TCPHLLSLFPNINRLKTI----ARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRE---LPK--ELK 548 (806)
Q Consensus 478 ~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~---lp~--~i~ 548 (806)
.+++|++|++++|.+... +...+..+++|++|+|++|.+.+..|..++.+++|++|+|++|.+.. +|. .++
T Consensus 115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 194 (310)
T 4glp_A 115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH 194 (310)
T ss_dssp CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence 344455555555444331 11222344455555555543333333444444555555555544331 211 123
Q ss_pred cCCCCcEEecCCCcccccccc---ccccCCCCCcEEEeecccCCC
Q 037138 549 ALVNLKYLNLEHSRYLHTIPR---QLICSFSMLHVLRMVNCDYSG 590 (806)
Q Consensus 549 ~L~~L~~L~L~~~~~l~~lp~---~~~~~l~~L~~L~l~~~~~~~ 590 (806)
.+++|++|++++|. +..+|. ..++.+++|++|++++|.+.+
T Consensus 195 ~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 195 KFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRA 238 (310)
T ss_dssp SSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred cCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence 44445555555444 222222 112344444555554444443
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=8.9e-16 Score=166.85 Aligned_cols=246 Identities=14% Similarity=0.103 Sum_probs=154.9
Q ss_pred CCCCccccccccccchhcchhH----hhccCCcccEEEccCCC---cccccCccc-------CCCCCCCEEEecCCCccc
Q 037138 477 PTCPHLLSLFPNINRLKTIARR----FFDFMPSLTVLNLSNNG---FLTKLRPGI-------SKLVSLQYLNLSKTSIRE 542 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~~~---~~~~lp~~i-------~~l~~L~~L~Ls~n~l~~ 542 (806)
..+++|++|++++|.+...... .+..+++|++|+|++|. +.+.+|..+ ..+++|++|+|++|.+..
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 4567889999999977665332 36678999999998862 223445444 688999999999998875
Q ss_pred -----cChhhhcCCCCcEEecCCCccccccccc---cccCC---------CCCcEEEeecccCCCCCCCCccccCCccch
Q 037138 543 -----LPKELKALVNLKYLNLEHSRYLHTIPRQ---LICSF---------SMLHVLRMVNCDYSGKIPLDSILFGGCESL 605 (806)
Q Consensus 543 -----lp~~i~~L~~L~~L~L~~~~~l~~lp~~---~~~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 605 (806)
+|..+..+++|++|+|++|.+....+.. .+..+ ++|++|++++|.+... ....+
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~---------~~~~l 179 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG---------SMKEW 179 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG---------GHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH---------HHHHH
Confidence 7778888999999999999753222211 13333 8899999998887621 11223
Q ss_pred HHHhcCCCCCCeeeEEecchhhHH--HhhhchhhccccccceeccCCCCCc----c-cccccccccccceEeeccccCcc
Q 037138 606 VEELISLKHLNVLTIALKSFFALQ--RFLSSHELQNCTKSLNLRYYDDSKS----F-NIYSLADLKHLDKLDLIYCRNLE 678 (806)
Q Consensus 606 ~~~l~~L~~L~~L~l~~~~~~~~~--~~~~~~~l~~~~~~l~L~~~~~~~~----~-~~~~l~~l~~L~~L~L~~~~~~~ 678 (806)
...+..+++|+.|+++.|.+.... .+. ...+..+..+..|+...|... . ....+..+++|+.|+|++|....
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~-~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLL-LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHH-HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HHHHHhCCCcCEEECcCCCCCHhHHHHHH-HHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 356778889999999888776322 111 113334445555555555432 1 11246667788888888775221
Q ss_pred ccceeeecccCCcCCCCcc--ccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceecccccc
Q 037138 679 EFKKVMIDFCIKLREVTWL--VFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALP 748 (806)
Q Consensus 679 ~L~~L~l~~c~~l~~~~~l--~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~ 748 (806)
. .....+..+ +.+++|+.|+|++|.+...- ...+|..+. ..+|+|++|++++++
T Consensus 259 ~---------~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g-----~~~l~~~l~--~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 259 R---------GAAAVVDAFSKLENIGLQTLRLQYNEIELDA-----VRTLKTVID--EKMPDLLFLELNGNR 314 (386)
T ss_dssp H---------HHHHHHHHHHTCSSCCCCEEECCSSCCBHHH-----HHHHHHHHH--HHCTTCCEEECTTSB
T ss_pred h---------hHHHHHHHHhhccCCCeEEEECcCCcCCHHH-----HHHHHHHHH--hcCCCceEEEccCCc
Confidence 0 000001233 33799999999999884310 012443221 235799999999854
No 94
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=8.1e-16 Score=157.14 Aligned_cols=170 Identities=22% Similarity=0.266 Sum_probs=133.4
Q ss_pred CCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcE
Q 037138 476 TPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKY 555 (806)
Q Consensus 476 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~ 555 (806)
...+.++..+.++.+.++.++. +..+++|++|++++| .+..+| .+..+++|++|++++|.++.+|. +..+++|++
T Consensus 15 d~~l~~l~~l~l~~~~i~~~~~--~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~ 89 (263)
T 1xeu_A 15 DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEE 89 (263)
T ss_dssp SHHHHHHHHHHHTCSCTTSEEC--HHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCE
T ss_pred CHHHHHHHHHHhcCCCcccccc--hhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCE
Confidence 3466778888898888888773 788899999999999 566677 78889999999999999998887 899999999
Q ss_pred EecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhch
Q 037138 556 LNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSH 635 (806)
Q Consensus 556 L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~ 635 (806)
|++++|. +..+|. +.. ++|++|++++|.+.+. ..+..+++|+.|+++.|.+..+.
T Consensus 90 L~L~~N~-l~~l~~--~~~-~~L~~L~L~~N~l~~~---------------~~l~~l~~L~~L~Ls~N~i~~~~------ 144 (263)
T 1xeu_A 90 LSVNRNR-LKNLNG--IPS-ACLSRLFLDNNELRDT---------------DSLIHLKNLEILSIRNNKLKSIV------ 144 (263)
T ss_dssp EECCSSC-CSCCTT--CCC-SSCCEEECCSSCCSBS---------------GGGTTCTTCCEEECTTSCCCBCG------
T ss_pred EECCCCc-cCCcCc--ccc-CcccEEEccCCccCCC---------------hhhcCcccccEEECCCCcCCCCh------
Confidence 9999998 566776 344 8999999999987743 25778888999888877654321
Q ss_pred hhccccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCCCccccCCCcceEeeecCcc
Q 037138 636 ELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFAPNLKSIHIANCHF 713 (806)
Q Consensus 636 ~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~~~~ 713 (806)
.+..+++|+.|++++|... ....+..+++|+.|++++|..
T Consensus 145 -----------------------~l~~l~~L~~L~L~~N~i~---------------~~~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 145 -----------------------MLGFLSKLEVLDLHGNEIT---------------NTGGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp -----------------------GGGGCTTCCEEECTTSCCC---------------BCTTSTTCCCCCEEEEEEEEE
T ss_pred -----------------------HHccCCCCCEEECCCCcCc---------------chHHhccCCCCCEEeCCCCcc
Confidence 3556788888998887522 124566788899999999887
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.58 E-value=3.8e-16 Score=169.84 Aligned_cols=272 Identities=17% Similarity=0.102 Sum_probs=172.9
Q ss_pred ccccccccccchhcchhHhhccCCcccEEEccCCCcccc----cCcccCCCCCCCEEEecCCCcc----ccChhh-----
Q 037138 481 HLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTK----LRPGISKLVSLQYLNLSKTSIR----ELPKEL----- 547 (806)
Q Consensus 481 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~----lp~~i~~l~~L~~L~Ls~n~l~----~lp~~i----- 547 (806)
.|+...+....+..++.. +..+++|++|+|++|.+... ++..+..+++|++|+|++|.+. .+|..+
T Consensus 10 ~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~ 88 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88 (386)
T ss_dssp CCEESSCCSHHHHTTSHH-HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHH-HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence 344444444455555543 78899999999999965544 4455788999999999997554 445554
Q ss_pred --hcCCCCcEEecCCCcccc----ccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCC---------
Q 037138 548 --KALVNLKYLNLEHSRYLH----TIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISL--------- 612 (806)
Q Consensus 548 --~~L~~L~~L~L~~~~~l~----~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L--------- 612 (806)
..+++|++|+|++|.+.. .+|.. +..+++|++|++++|.+....+ ......+..+
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~---------~~l~~~l~~l~~~~~~~~~ 158 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQAG---------AKIARALQELAVNKKAKNA 158 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHHH---------HHHHHHHHHHHHHHHHHTC
T ss_pred HHhhCCcccEEECCCCcCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHHH---------HHHHHHHHHHhhhhhcccC
Confidence 689999999999998544 36655 7889999999999998753211 1122334445
Q ss_pred CCCCeeeEEecchh--hHHHhhhchhhccccccceeccCCCCCcc-----ccc-ccccccccceEeeccccCccccceee
Q 037138 613 KHLNVLTIALKSFF--ALQRFLSSHELQNCTKSLNLRYYDDSKSF-----NIY-SLADLKHLDKLDLIYCRNLEEFKKVM 684 (806)
Q Consensus 613 ~~L~~L~l~~~~~~--~~~~~~~~~~l~~~~~~l~L~~~~~~~~~-----~~~-~l~~l~~L~~L~L~~~~~~~~L~~L~ 684 (806)
++|+.|+++.|.+. .+..+. ..+..+..+..|....+.... ..+ .+..+++|+.|+|++|.....
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~--~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~----- 231 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWA--KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL----- 231 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHH--HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH-----
T ss_pred CCCcEEECCCCCCCcHHHHHHH--HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH-----
Confidence 89999999999875 333221 223334455555555554331 122 677788899999988853100
Q ss_pred ecccCCcCCCCccccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceecccccccccccccCCCCCchHH
Q 037138 685 IDFCIKLREVTWLVFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKSIYWNALPSHIWK 764 (806)
Q Consensus 685 l~~c~~l~~~~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~ 764 (806)
+. ...+..+..+++|+.|+|++|.+...-. ..+|..+.. ..+++|+.|+|+++. +... ....+.
T Consensus 232 --g~--~~l~~~l~~~~~L~~L~L~~n~i~~~~~-----~~l~~~l~~-~~~~~L~~L~L~~n~-i~~~-----g~~~l~ 295 (386)
T 2ca6_A 232 --GS--SALAIALKSWPNLRELGLNDCLLSARGA-----AAVVDAFSK-LENIGLQTLRLQYNE-IELD-----AVRTLK 295 (386)
T ss_dssp --HH--HHHHHHGGGCTTCCEEECTTCCCCHHHH-----HHHHHHHHT-CSSCCCCEEECCSSC-CBHH-----HHHHHH
T ss_pred --HH--HHHHHHHccCCCcCEEECCCCCCchhhH-----HHHHHHHhh-ccCCCeEEEECcCCc-CCHH-----HHHHHH
Confidence 00 0012346678999999999998732210 113322211 235799999999842 1110 001133
Q ss_pred HH-HccCCCCCCCCCCCCccccc
Q 037138 765 KL-IMGCAGLKKLPLDSNSRKEH 786 (806)
Q Consensus 765 ~l-l~~c~~L~~L~l~~n~~~~~ 786 (806)
.. ..+|++|+.|++++|.+...
T Consensus 296 ~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHhcCCCceEEEccCCcCCcc
Confidence 33 36799999999999986543
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=4.8e-15 Score=144.46 Aligned_cols=147 Identities=15% Similarity=0.157 Sum_probs=126.8
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
+.+.+.++.+..++....+++|++|++++|.+..++ .+..+++|++|++++|.+.+..|..++.+++|++|++++|.+
T Consensus 47 ~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i 124 (197)
T 4ezg_A 47 TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124 (197)
T ss_dssp CEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC
T ss_pred cEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc
Confidence 678888999998887788999999999999877665 488999999999999977777888999999999999999999
Q ss_pred c-ccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeee
Q 037138 541 R-ELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLT 619 (806)
Q Consensus 541 ~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 619 (806)
+ ..|..++.+++|++|++++|..++.+|. +..+++|++|++++|.+.+. ..+..+++|+.|+
T Consensus 125 ~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~---------------~~l~~l~~L~~L~ 187 (197)
T 4ezg_A 125 DDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY---------------RGIEDFPKLNQLY 187 (197)
T ss_dssp BGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC---------------TTGGGCSSCCEEE
T ss_pred CcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh---------------HHhccCCCCCEEE
Confidence 8 4778899999999999999986788884 89999999999999988753 2577889999999
Q ss_pred EEecchh
Q 037138 620 IALKSFF 626 (806)
Q Consensus 620 l~~~~~~ 626 (806)
++.|.+.
T Consensus 188 l~~N~i~ 194 (197)
T 4ezg_A 188 AFSQTIG 194 (197)
T ss_dssp ECBC---
T ss_pred eeCcccC
Confidence 9988764
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.57 E-value=6.6e-15 Score=146.01 Aligned_cols=150 Identities=19% Similarity=0.255 Sum_probs=128.3
Q ss_pred EEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCcc
Q 037138 462 RISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIR 541 (806)
Q Consensus 462 ~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~ 541 (806)
.+...++.+..+|... .++|+.|++++|.+..+++..|..+++|++|+|++|.+.+..|..|..+++|++|+|++|.++
T Consensus 15 ~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp EEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred EEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 4556677777777543 378999999999999999888999999999999999776667889999999999999999999
Q ss_pred ccChh-hhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeE
Q 037138 542 ELPKE-LKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTI 620 (806)
Q Consensus 542 ~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 620 (806)
.+|.. +..+++|++|+|++|. +..++...+..+++|++|++++|.+.+..+ ..+..+++|+.|++
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAK-------------GTFSPLRAIQTMHL 159 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT-------------TTTTTCTTCCEEEC
T ss_pred ccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECH-------------HHHhCCCCCCEEEe
Confidence 99876 5889999999999998 456655559999999999999999886533 35778899999999
Q ss_pred Eecchh
Q 037138 621 ALKSFF 626 (806)
Q Consensus 621 ~~~~~~ 626 (806)
+.|.+.
T Consensus 160 ~~N~~~ 165 (220)
T 2v9t_B 160 AQNPFI 165 (220)
T ss_dssp CSSCEE
T ss_pred CCCCcC
Confidence 988764
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.57 E-value=1.1e-14 Score=143.20 Aligned_cols=109 Identities=30% Similarity=0.418 Sum_probs=56.3
Q ss_pred CccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChh-hhcCCCCcEEec
Q 037138 480 PHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKE-LKALVNLKYLNL 558 (806)
Q Consensus 480 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~L 558 (806)
++|+.|++++|.++.+++..|..+++|++|++++|.+.+..+..+..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 4555555555555555555555555555555555533322222345555555555555555555433 355555555555
Q ss_pred CCCccccccccccccCCCCCcEEEeecccCC
Q 037138 559 EHSRYLHTIPRQLICSFSMLHVLRMVNCDYS 589 (806)
Q Consensus 559 ~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 589 (806)
++|. +..+|...+..+++|++|++++|.+.
T Consensus 108 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 108 NTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCc-CcccCHhHhccCCcCCEEECCCCccc
Confidence 5554 33444433455555555555555443
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=1.3e-14 Score=155.11 Aligned_cols=221 Identities=15% Similarity=0.125 Sum_probs=136.0
Q ss_pred ccccccccchhcchhHhhccCCcccEEEccCCCcccccCc-ccCCCCCCCEEEecCCCcc-ccCh-hhhcCCCCcEEe-c
Q 037138 483 LSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRP-GISKLVSLQYLNLSKTSIR-ELPK-ELKALVNLKYLN-L 558 (806)
Q Consensus 483 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~l~~L~~L~Ls~n~l~-~lp~-~i~~L~~L~~L~-L 558 (806)
++++.++++++.+|... .+++++|+|++| .+..+|. .|.++++|++|+|++|.+. .+|. .+.++++|+.+. +
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56777888888888763 367899999999 4556664 6889999999999999875 5664 468888887644 4
Q ss_pred CCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEec-chhhHHHhhhchhh
Q 037138 559 EHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALK-SFFALQRFLSSHEL 637 (806)
Q Consensus 559 ~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~-~~~~~~~~~~~~~l 637 (806)
++|+ +..+|++.|..+++|++|++++|.+....+ ..+....++..+++..+ .+..+. ...+
T Consensus 88 ~~N~-l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~-------------~~~~~~~~l~~l~l~~~~~i~~l~----~~~f 149 (350)
T 4ay9_X 88 KANN-LLYINPEAFQNLPNLQYLLISNTGIKHLPD-------------VHKIHSLQKVLLDIQDNINIHTIE----RNSF 149 (350)
T ss_dssp EETT-CCEECTTSBCCCTTCCEEEEEEECCSSCCC-------------CTTCCBSSCEEEEEESCTTCCEEC----TTSS
T ss_pred cCCc-ccccCchhhhhccccccccccccccccCCc-------------hhhcccchhhhhhhcccccccccc----ccch
Confidence 4455 677777778999999999999998875422 12233345556666532 222221 0111
Q ss_pred cccc-ccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCCC--ccccCCCcceEeeecCccc
Q 037138 638 QNCT-KSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVT--WLVFAPNLKSIHIANCHFM 714 (806)
Q Consensus 638 ~~~~-~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~--~l~~l~~L~~L~L~~~~~~ 714 (806)
.... .+..|....|......+......+|+.|++ .++..++.++ .+..+++|+.|+|++|.+
T Consensus 150 ~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l--------------~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l- 214 (350)
T 4ay9_X 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL--------------SDNNNLEELPNDVFHGASGPVILDISRTRI- 214 (350)
T ss_dssp TTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEEC--------------TTCTTCCCCCTTTTTTEECCSEEECTTSCC-
T ss_pred hhcchhhhhhccccccccCCChhhccccchhHHhh--------------ccCCcccCCCHHHhccCcccchhhcCCCCc-
Confidence 1111 122233333322221112222334444444 4444555544 357788999999999987
Q ss_pred hhhhcccccCccccccCCCCcccccceecccccccccccc
Q 037138 715 QEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKSIY 754 (806)
Q Consensus 715 ~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~ 754 (806)
..+|. ..|.+|+.|.+.++.+++.++
T Consensus 215 ---------~~lp~-----~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 215 ---------HSLPS-----YGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp ---------CCCCS-----SSCTTCCEEECTTCTTCCCCC
T ss_pred ---------CccCh-----hhhccchHhhhccCCCcCcCC
Confidence 45653 234577777777777777665
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=8.2e-15 Score=148.85 Aligned_cols=153 Identities=24% Similarity=0.303 Sum_probs=132.6
Q ss_pred EEEeeecccccccCC--CCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCC
Q 037138 461 RRISLMRNKIEKLSD--TPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKT 538 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n 538 (806)
+.+.+.++.+..++. ..++++|++|++++|.+..+++..|..+++|++|+|++|.+.+..|..+..+++|++|+|++|
T Consensus 38 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence 678888888887754 478899999999999999999988999999999999999666555567899999999999999
Q ss_pred CccccChh-hhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCe
Q 037138 539 SIRELPKE-LKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNV 617 (806)
Q Consensus 539 ~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 617 (806)
.++.+|.. +..+++|++|++++|. +..+|...+..+++|++|++++|.+.+..+ ..+..+++|+.
T Consensus 118 ~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------~~~~~l~~L~~ 183 (251)
T 3m19_A 118 QLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPH-------------GAFDRLGKLQT 183 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT-------------TTTTTCTTCCE
T ss_pred cCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCH-------------HHHhCCCCCCE
Confidence 99988876 6899999999999998 567777668999999999999999886533 35778899999
Q ss_pred eeEEecchhh
Q 037138 618 LTIALKSFFA 627 (806)
Q Consensus 618 L~l~~~~~~~ 627 (806)
|+++.|.+..
T Consensus 184 L~l~~N~~~c 193 (251)
T 3m19_A 184 ITLFGNQFDC 193 (251)
T ss_dssp EECCSCCBCT
T ss_pred EEeeCCceeC
Confidence 9999988753
No 101
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.57 E-value=9.5e-14 Score=148.68 Aligned_cols=272 Identities=15% Similarity=0.071 Sum_probs=168.6
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcc------cHHHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDM------QLERIQEKI 208 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~------~~~~~~~~i 208 (806)
..++||+.+++++.+++..+ +++.|+|++|+|||||++++++.. . .+|+++.... +...+.+.+
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKEL 81 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHHH
Confidence 56899999999999988654 799999999999999999999875 1 7788765432 556666666
Q ss_pred HHHhCC-----------------CC---CCCHHHHHHHHHHHhCC-CcEEEEEecCCCccC---------cccccccCCC
Q 037138 209 GERIGL-----------------LE---NRSLEERASGIFKILSK-KKFLLLLDDVWERID---------LTKVGIPFPS 258 (806)
Q Consensus 209 ~~~l~~-----------------~~---~~~~~~~~~~l~~~l~~-k~~LlvlDdv~~~~~---------~~~~~~~~~~ 258 (806)
.+.+.. .. ..+..+..+.+.+.... ++++|||||++.... +..+......
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~ 161 (350)
T 2qen_A 82 QSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS 161 (350)
T ss_dssp HHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh
Confidence 665532 00 13455555666555542 399999999976432 1112111111
Q ss_pred CCCcEEEEecCC-----------------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCc
Q 037138 259 KNTSKVVFTTRL-----------------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGL 315 (806)
Q Consensus 259 ~~~s~iivTtr~-----------------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 315 (806)
..+.++|+|++. .+.+.+|+.+|+.+++...+...... --.+.+..|++.|+|+
T Consensus 162 ~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~---~~~~~~~~i~~~tgG~ 238 (350)
T 2qen_A 162 LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD---VPENEIEEAVELLDGI 238 (350)
T ss_dssp CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHHTTC
T ss_pred cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCC
Confidence 346788887542 47789999999999998765322111 1146788999999999
Q ss_pred hHHHHHhh-h-cCCCCHHHHHHHHHHHhhcccCCCCCccchhhhhhhchhcC---ChhhHHHHHhhhcCCCCCCcccHHH
Q 037138 316 PLALITTG-L-GCKKSQEEWSYAIEILRRSASELPGMGKEVYPLLKFSYDSL---SSEIFRSCLLYCSLFPEDCKIDKIE 390 (806)
Q Consensus 316 Plai~~~g-~-~~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~~k~cfl~~~~fp~~~~i~~~~ 390 (806)
|+++..++ . ....+...+.. .+.. .+...+.-.+..+ ++ ..+..+..+|. . ..+...
T Consensus 239 P~~l~~~~~~~~~~~~~~~~~~---~~~~----------~~~~~~~~~l~~l~~~~~-~~~~~l~~la~-g---~~~~~~ 300 (350)
T 2qen_A 239 PGWLVVFGVEYLRNGDFGRAMK---RTLE----------VAKGLIMGELEELRRRSP-RYVDILRAIAL-G---YNRWSL 300 (350)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHH---HHHH----------HHHHHHHHHHHHHHHHCH-HHHHHHHHHHT-T---CCSHHH
T ss_pred HHHHHHHHHHHhccccHhHHHH---HHHH----------HHHHHHHHHHHHHHhCCh-hHHHHHHHHHh-C---CCCHHH
Confidence 99999988 2 11122222211 1111 1111111111222 55 67888888887 2 134444
Q ss_pred HHHHHHHcCCccCCCchhHHHhHHHHHHHHHHcccceeeCCCcEE-ehHHHHHHH
Q 037138 391 LIECWIGEGFLNGYEGAEVHNQGYYIIGILVHACLLEEVGSDHVR-MHDAIRDMT 444 (806)
Q Consensus 391 li~~Wia~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~-mHdlv~d~a 444 (806)
+....-+. .- .. .......+++.|.+.+++...+ +.|. .|.+++.+.
T Consensus 301 l~~~~~~~-~~-~~----~~~~~~~~l~~L~~~gli~~~~-~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 301 IRDYLAVK-GT-KI----PEPRLYALLENLKKMNWIVEED-NTYKIADPVVATVL 348 (350)
T ss_dssp HHHHHHHT-TC-CC----CHHHHHHHHHHHHHTTSEEEET-TEEEESSHHHHHHH
T ss_pred HHHHHHHH-hC-CC----CHHHHHHHHHHHHhCCCEEecC-CEEEEecHHHHHHH
Confidence 44332111 00 10 1234567899999999998764 4455 477777764
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=152.89 Aligned_cols=231 Identities=16% Similarity=0.095 Sum_probs=153.5
Q ss_pred ccccccccccchh-----cchhHhhccCCcccEEEccCCCcccccCccc--CCCCCCCEEEecCCCccc-cC----hhhh
Q 037138 481 HLLSLFPNINRLK-----TIARRFFDFMPSLTVLNLSNNGFLTKLRPGI--SKLVSLQYLNLSKTSIRE-LP----KELK 548 (806)
Q Consensus 481 ~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i--~~l~~L~~L~Ls~n~l~~-lp----~~i~ 548 (806)
.++.|.+..+.+. .+.. +..+++|++|++++|.+.+..|..+ ..+++|++|+|++|.++. .| ..+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALR--VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHH--HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCcCCHHHHHHHHH--hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 3455555555432 2222 2345679999999998788888888 899999999999999884 33 3456
Q ss_pred cCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhH
Q 037138 549 ALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFAL 628 (806)
Q Consensus 549 ~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 628 (806)
.+++|++|++++|.+ ..+|...++.+++|++|++++|.+.+.... .....+..+++|+.|+++.|.+..+
T Consensus 143 ~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------~~~~~~~~l~~L~~L~Ls~N~l~~l 212 (310)
T 4glp_A 143 LKPGLKVLSIAQAHS-PAFSCEQVRAFPALTSLDLSDNPGLGERGL---------MAALCPHKFPAIQNLALRNTGMETP 212 (310)
T ss_dssp BCSCCCEEEEECCSS-CCCCTTSCCCCTTCCEEECCSCTTCHHHHH---------HTTSCTTSSCCCCSCBCCSSCCCCH
T ss_pred hccCCCEEEeeCCCc-chhhHHHhccCCCCCEEECCCCCCccchhh---------hHHHhhhcCCCCCEEECCCCCCCch
Confidence 799999999999985 556655589999999999999987532000 0001235788999999998877544
Q ss_pred HHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCCCccccCCCcceEee
Q 037138 629 QRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFAPNLKSIHI 708 (806)
Q Consensus 629 ~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L 708 (806)
...... .+..+++|++|+|++|...... -..+..+..+++|++|+|
T Consensus 213 ~~~~~~------------------------l~~~l~~L~~L~Ls~N~l~~~~----------p~~~~~~~~~~~L~~L~L 258 (310)
T 4glp_A 213 TGVCAA------------------------LAAAGVQPHSLDLSHNSLRATV----------NPSAPRCMWSSALNSLNL 258 (310)
T ss_dssp HHHHHH------------------------HHHHTCCCSSEECTTSCCCCCC----------CSCCSSCCCCTTCCCEEC
T ss_pred HHHHHH------------------------HHhcCCCCCEEECCCCCCCccc----------hhhHHhccCcCcCCEEEC
Confidence 321100 1345678888888887532110 000111222378888888
Q ss_pred ecCccchhhhcccccCccccccCCCCcccccceecccccccccccccCCCCCchHHHHHccCCCCCCCCCCCCccc
Q 037138 709 ANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKSIYWNALPSHIWKKLIMGCAGLKKLPLDSNSRK 784 (806)
Q Consensus 709 ~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~ll~~c~~L~~L~l~~n~~~ 784 (806)
++|.+ ..+|..+ +++|+.|+|++ .+++.++. +..+++|+.|++++|.+.
T Consensus 259 s~N~l----------~~lp~~~-----~~~L~~L~Ls~-N~l~~~~~-----------~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 259 SFAGL----------EQVPKGL-----PAKLRVLDLSS-NRLNRAPQ-----------PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSSCC----------CSCCSCC-----CSCCSCEECCS-CCCCSCCC-----------TTSCCCCSCEECSSTTTS
T ss_pred CCCCC----------Cchhhhh-----cCCCCEEECCC-CcCCCCch-----------hhhCCCccEEECcCCCCC
Confidence 88887 3566432 26888888887 35555421 135688888888888753
No 103
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.56 E-value=2.1e-14 Score=157.51 Aligned_cols=276 Identities=14% Similarity=0.066 Sum_probs=172.6
Q ss_pred CccccchHHHHHHHHHh-c----C--CCceEEEE--EccCCCCHHHHHHHHHhhcCCC--CCCCC-eEEEEEeCCcccHH
Q 037138 135 PTIVGLNSTLEKVWRCL-G----E--ERVGIIGL--YGMGGVGKTTLLAQINNKFLDT--PNDFD-VVIWVVVSKDMQLE 202 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l-~----~--~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~--~~~F~-~~~wv~~s~~~~~~ 202 (806)
..++||+.+++++.+++ . . .....+.| +|++|+||||||+.+++..... ...|+ .++|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 57899999999999888 3 2 24556666 9999999999999999876110 01122 46788876777888
Q ss_pred HHHHHHHHHhCCCC---CCCHHHHHHHHHHHhC--CCcEEEEEecCCCccC--------cccccccC---CC-C--CCcE
Q 037138 203 RIQEKIGERIGLLE---NRSLEERASGIFKILS--KKKFLLLLDDVWERID--------LTKVGIPF---PS-K--NTSK 263 (806)
Q Consensus 203 ~~~~~i~~~l~~~~---~~~~~~~~~~l~~~l~--~k~~LlvlDdv~~~~~--------~~~~~~~~---~~-~--~~s~ 263 (806)
.++..++.+++... ..+.......+...+. +++++|||||++.... +..+...+ +. + ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 99999999987543 3345566666776664 7899999999986321 22221111 11 2 3445
Q ss_pred EEEecCC--------------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhC------CchH
Q 037138 264 VVFTTRL--------------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECG------GLPL 317 (806)
Q Consensus 264 iivTtr~--------------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~------GlPl 317 (806)
||+||+. .+.+.+++.++++++|...+.... ....--.+....|++.|+ |.|.
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~G~p~ 260 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL-RDTVWEPRHLELISDVYGEDKGGDGSAR 260 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB-CTTSCCHHHHHHHHHHHCGGGTSCCCHH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC-CCCCCChHHHHHHHHHHHHhccCCCcHH
Confidence 7778763 278999999999999976642111 001112567889999999 9997
Q ss_pred HHHHhh-----h--cC---CCCHHHHHHHHHHHhhcccCCCCCccchhhhhhhchhcCChhhHHHHHhhhcCCC--CCCc
Q 037138 318 ALITTG-----L--GC---KKSQEEWSYAIEILRRSASELPGMGKEVYPLLKFSYDSLSSEIFRSCLLYCSLFP--EDCK 385 (806)
Q Consensus 318 ai~~~g-----~--~~---~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp--~~~~ 385 (806)
.+..+. . .. .-+.+.+..++..... ...+.-++..||. ..+.++..++.+. .+..
T Consensus 261 ~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 261 RAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSI-HELIILRLIAEATLGGMEW 327 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCH-HHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCC
Confidence 554443 1 11 1233444433321100 2234556788998 6788888888653 2334
Q ss_pred ccHHHHHHHHH--H---cCCccCCCchhHHHhHHHHHHHHHHcccceee
Q 037138 386 IDKIELIECWI--G---EGFLNGYEGAEVHNQGYYIIGILVHACLLEEV 429 (806)
Q Consensus 386 i~~~~li~~Wi--a---~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~ 429 (806)
+...++...+- + .|. .. ........+++.|...+++...
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNV-KP----RGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCC-CC----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHHHHhhcCC-CC----CCHHHHHHHHHHHHhCCCEEee
Confidence 55555544432 1 121 00 1123455679999999999764
No 104
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.55 E-value=1.1e-14 Score=167.98 Aligned_cols=220 Identities=13% Similarity=0.078 Sum_probs=114.2
Q ss_pred CCCccccccccccchhcc----hhHhhccCCcccEEEccCCCcc----cccCcccCCCCCCCEEEecCCCccccChhhhc
Q 037138 478 TCPHLLSLFPNINRLKTI----ARRFFDFMPSLTVLNLSNNGFL----TKLRPGISKLVSLQYLNLSKTSIRELPKELKA 549 (806)
Q Consensus 478 ~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~~~~~----~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~ 549 (806)
.|++|++|++++|.+.+. ...++..+++|++|++++|... ..++..+.++++|++|++++|.+..+|..+.+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 456677777776655433 2233455666777777666433 23444455666677777776666666666666
Q ss_pred CCCCcEEecCCCcc--------------------------ccccccccccCCCCCcEEEeecccCCCCCCCCccccCCcc
Q 037138 550 LVNLKYLNLEHSRY--------------------------LHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCE 603 (806)
Q Consensus 550 L~~L~~L~L~~~~~--------------------------l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 603 (806)
+++|++|+++++.. ...+|.. +..+++|++|++++|.+.+.
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~Ls~~~l~~~------------ 308 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL-FPFAAQIRKLDLLYALLETE------------ 308 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGG-GGGGGGCCEEEETTCCCCHH------------
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHH-HhhcCCCcEEecCCCcCCHH------------
Confidence 66666666653211 2233432 45566777777776664321
Q ss_pred chHHHhcCCCCCCeeeEEecchhhHHHhhhchhhccccccceecc----------CCCCCcccccc-cccccccceEeec
Q 037138 604 SLVEELISLKHLNVLTIALKSFFALQRFLSSHELQNCTKSLNLRY----------YDDSKSFNIYS-LADLKHLDKLDLI 672 (806)
Q Consensus 604 ~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~----------~~~~~~~~~~~-l~~l~~L~~L~L~ 672 (806)
.....+..+++|+.|++. +.+.... +.........++.+.+.. +.......... ...+++|++|+++
T Consensus 309 ~~~~~~~~~~~L~~L~L~-~~~~~~~-l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~ 386 (592)
T 3ogk_B 309 DHCTLIQKCPNLEVLETR-NVIGDRG-LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY 386 (592)
T ss_dssp HHHHHHTTCTTCCEEEEE-GGGHHHH-HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE
T ss_pred HHHHHHHhCcCCCEEecc-CccCHHH-HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee
Confidence 122345778888888887 3332211 111111112234444442 12222111111 3346778888875
Q ss_pred cccCc-----------cccceeeecc---cCCcCCCC-------ccccCCCcceEeeecCc
Q 037138 673 YCRNL-----------EEFKKVMIDF---CIKLREVT-------WLVFAPNLKSIHIANCH 712 (806)
Q Consensus 673 ~~~~~-----------~~L~~L~l~~---c~~l~~~~-------~l~~l~~L~~L~L~~~~ 712 (806)
.+... ..|+.|.+.+ |..++..+ .+..+++|++|+|++|.
T Consensus 387 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 387 VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence 44321 2267777763 34444321 13446777777776554
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=1.2e-14 Score=141.50 Aligned_cols=151 Identities=17% Similarity=0.250 Sum_probs=75.7
Q ss_pred cCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEE
Q 037138 502 FMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVL 581 (806)
Q Consensus 502 ~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L 581 (806)
.+++|++|++++| .+..+| .+..+++|++|++++|.++.++ .+..+++|++|++++|.+....|.. ++.+++|++|
T Consensus 42 ~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEE
T ss_pred hcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEE
Confidence 3445555555555 333444 4555555555555555444433 4555555555555555533333333 5555555555
Q ss_pred EeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecc-hhhHHHhhhchhhccccccceeccCCCCCccccccc
Q 037138 582 RMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKS-FFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSL 660 (806)
Q Consensus 582 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~-~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l 660 (806)
++++|.+.+. .+..+..+++|+.|+++.|. +..+ +.+
T Consensus 118 ~Ls~n~i~~~-------------~~~~l~~l~~L~~L~L~~n~~i~~~-----------------------------~~l 155 (197)
T 4ezg_A 118 DISHSAHDDS-------------ILTKINTLPKVNSIDLSYNGAITDI-----------------------------MPL 155 (197)
T ss_dssp ECCSSBCBGG-------------GHHHHTTCSSCCEEECCSCTBCCCC-----------------------------GGG
T ss_pred EecCCccCcH-------------hHHHHhhCCCCCEEEccCCCCcccc-----------------------------Hhh
Confidence 5555554432 11344555555555554433 1111 124
Q ss_pred ccccccceEeeccccCccccceeeecccCCcCCCCccccCCCcceEeeecCcc
Q 037138 661 ADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFAPNLKSIHIANCHF 713 (806)
Q Consensus 661 ~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~~~~ 713 (806)
..+++|+.|++++|. ++.++.+..+++|+.|++++|.+
T Consensus 156 ~~l~~L~~L~l~~n~---------------i~~~~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 156 KTLPELKSLNIQFDG---------------VHDYRGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp GGCSSCCEEECTTBC---------------CCCCTTGGGCSSCCEEEECBC--
T ss_pred cCCCCCCEEECCCCC---------------CcChHHhccCCCCCEEEeeCccc
Confidence 445666777776663 12233455667777777777764
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.53 E-value=6.8e-15 Score=158.21 Aligned_cols=245 Identities=16% Similarity=0.162 Sum_probs=148.3
Q ss_pred CCCccccccccccchhcchh----HhhccCC-cccEEEccCCCcccccCcccCCC-----CCCCEEEecCCCccccCh-h
Q 037138 478 TCPHLLSLFPNINRLKTIAR----RFFDFMP-SLTVLNLSNNGFLTKLRPGISKL-----VSLQYLNLSKTSIRELPK-E 546 (806)
Q Consensus 478 ~~~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~Ls~~~~~~~lp~~i~~l-----~~L~~L~Ls~n~l~~lp~-~ 546 (806)
..++|+.|++++|.++..+. ..|..++ +|++|+|++|.+.+..+..+..+ ++|++|+|++|.++..+. .
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 34559999999998888776 6678888 89999999996655556666654 889999999998885443 2
Q ss_pred ----hhcC-CCCcEEecCCCcccccccccc----ccC-CCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCC-CC
Q 037138 547 ----LKAL-VNLKYLNLEHSRYLHTIPRQL----ICS-FSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLK-HL 615 (806)
Q Consensus 547 ----i~~L-~~L~~L~L~~~~~l~~lp~~~----~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L 615 (806)
+..+ ++|++|++++|.+ +..+... +.. .++|++|++++|.+... +.......+..++ +|
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~---------~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGNDLGIK---------SSDELIQILAAIPANV 169 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS---------CHHHHHHHHHTSCTTC
T ss_pred HHHHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCcCCHH---------HHHHHHHHHhcCCccc
Confidence 4445 8999999999984 4444322 233 36899999999887643 1123345556665 89
Q ss_pred CeeeEEecchhhHHHhhhchhhccc-cccceeccCCCCCccc-----cccccc-ccccceEeeccccCccccceeeeccc
Q 037138 616 NVLTIALKSFFALQRFLSSHELQNC-TKSLNLRYYDDSKSFN-----IYSLAD-LKHLDKLDLIYCRNLEEFKKVMIDFC 688 (806)
Q Consensus 616 ~~L~l~~~~~~~~~~~~~~~~l~~~-~~~l~L~~~~~~~~~~-----~~~l~~-l~~L~~L~L~~~~~~~~L~~L~l~~c 688 (806)
+.|+++.|.+...........+..+ ..+..|+...|..... ...+.. .++|++|+|++|.....
T Consensus 170 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~--------- 240 (362)
T 3goz_A 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP--------- 240 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC---------
T ss_pred cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH---------
Confidence 9999988877543211111112222 2344444444433221 112333 34777777777642110
Q ss_pred CCcCC-CCccccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceeccccc
Q 037138 689 IKLRE-VTWLVFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRAL 747 (806)
Q Consensus 689 ~~l~~-~~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~ 747 (806)
.... ...+..+++|+.|+|++|.... +.. .....++ ..+..+++|+.|++++.
T Consensus 241 -~~~~l~~~~~~l~~L~~L~L~~n~l~~-i~~-~~~~~l~---~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 241 -SLENLKLLKDSLKHLQTVYLDYDIVKN-MSK-EQCKALG---AAFPNIQKIILVDKNGK 294 (362)
T ss_dssp -CHHHHHHTTTTTTTCSEEEEEHHHHTT-CCH-HHHHHHH---TTSTTCCEEEEECTTSC
T ss_pred -HHHHHHHHHhcCCCccEEEeccCCccc-cCH-HHHHHHH---HHhccCCceEEEecCCC
Confidence 0000 0123567889999999997310 000 0001222 24445678999999874
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.53 E-value=2.3e-14 Score=142.14 Aligned_cols=151 Identities=18% Similarity=0.263 Sum_probs=126.4
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcch-hHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCC
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIA-RRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTS 539 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~ 539 (806)
+.+.+..+.+..+|.. -.+.++.|++++|.++.++ ...|..+++|++|+|++|.+.+..|..|..+++|++|+|++|.
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 4677778888888753 2457799999999999884 4668999999999999996655556689999999999999999
Q ss_pred ccccChh-hhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCee
Q 037138 540 IRELPKE-LKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVL 618 (806)
Q Consensus 540 l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 618 (806)
++.+|.. +..+++|++|++++|.+ ..+++..+..+++|++|++++|.+.+..| ..+..+++|+.|
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------~~~~~l~~L~~L 158 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAP-------------GAFDTLHSLSTL 158 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCC-CCBCTTSSTTCTTCSEEECTTSCCCCBCT-------------TTTTTCTTCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcC-CeECHhHcCCCccCCEEECCCCcCCEECH-------------HHhcCCCCCCEE
Confidence 9988764 89999999999999985 55544458999999999999999886544 467889999999
Q ss_pred eEEecchh
Q 037138 619 TIALKSFF 626 (806)
Q Consensus 619 ~l~~~~~~ 626 (806)
+++.|.+.
T Consensus 159 ~L~~N~l~ 166 (220)
T 2v70_A 159 NLLANPFN 166 (220)
T ss_dssp ECCSCCEE
T ss_pred EecCcCCc
Confidence 99988775
No 108
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.53 E-value=4.5e-13 Score=143.81 Aligned_cols=270 Identities=14% Similarity=0.133 Sum_probs=161.4
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCc-----ccHHHHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKD-----MQLERIQEKIG 209 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-----~~~~~~~~~i~ 209 (806)
..++||+.+++++.+ +.. +++.|+|++|+|||||++++.+.. . . ..+|+++... .+...+...+.
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~-~--~---~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL-N--L---PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH-T--C---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc-C--C---CEEEEEchhhccccCCCHHHHHHHHH
Confidence 568999999999999 765 699999999999999999999986 2 2 2578887642 23444444444
Q ss_pred HHhC--------------C------C-----------CCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc-----Cccccc
Q 037138 210 ERIG--------------L------L-----------ENRSLEERASGIFKILSKKKFLLLLDDVWERI-----DLTKVG 253 (806)
Q Consensus 210 ~~l~--------------~------~-----------~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~-----~~~~~~ 253 (806)
+.+. . . .........+.+.+.-. ++++|||||++... ++..+.
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHH
Confidence 4331 0 0 01234444444444322 49999999997532 222111
Q ss_pred ccCCC-CCCcEEEEecCC-----------------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHH
Q 037138 254 IPFPS-KNTSKVVFTTRL-----------------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLA 309 (806)
Q Consensus 254 ~~~~~-~~~s~iivTtr~-----------------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~ 309 (806)
..+.. ..+.++|+|++. .+.+.+|+.+|+.+++...+...... ... ...|+
T Consensus 162 ~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~-~~~----~~~i~ 236 (357)
T 2fna_A 162 AYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADID-FKD----YEVVY 236 (357)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCC-CCC----HHHHH
T ss_pred HHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCC-CCc----HHHHH
Confidence 11112 346788888763 46789999999999998765321111 111 18899
Q ss_pred HHhCCchHHHHHhh--hcCCCCHHHHHHH-HHHHhhcccCCCCCccchhhhhh-hch--hcCChhhHHHHHhhhcCCCCC
Q 037138 310 KECGGLPLALITTG--LGCKKSQEEWSYA-IEILRRSASELPGMGKEVYPLLK-FSY--DSLSSEIFRSCLLYCSLFPED 383 (806)
Q Consensus 310 ~~c~GlPlai~~~g--~~~~~~~~~w~~~-l~~l~~~~~~~~~~~~~~~~~l~-~sy--~~L~~~~~k~cfl~~~~fp~~ 383 (806)
+.|+|+|+++..++ +....+...|... .+.... .+...+. +.+ ..+++ ..+..+..+|. +
T Consensus 237 ~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~l~~-~~~~~l~~la~---g 302 (357)
T 2fna_A 237 EKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK----------LILKEFENFLHGREIARK-RYLNIMRTLSK---C 302 (357)
T ss_dssp HHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----------HHHHHHHHHHTTCGGGHH-HHHHHHHHHTT---C
T ss_pred HHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH----------HHHHHHHHHhhccccccH-HHHHHHHHHHc---C
Confidence 99999999999988 2222333333221 111000 0111111 111 15677 67888888887 2
Q ss_pred CcccHHHHHHHHH-HcCCccCCCchhHHHhHHHHHHHHHHcccceeeCCCcEE-ehHHHHHH
Q 037138 384 CKIDKIELIECWI-GEGFLNGYEGAEVHNQGYYIIGILVHACLLEEVGSDHVR-MHDAIRDM 443 (806)
Q Consensus 384 ~~i~~~~li~~Wi-a~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~~~~~~~-mHdlv~d~ 443 (806)
. +...+....- ..|. . -.......+++.|.+.+++...+ ..|. .|++++++
T Consensus 303 ~--~~~~l~~~~~~~~g~--~----~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~ 355 (357)
T 2fna_A 303 G--KWSDVKRALELEEGI--E----ISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLA 355 (357)
T ss_dssp B--CHHHHHHHHHHHHCS--C----CCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHH
T ss_pred C--CHHHHHHHHHHhcCC--C----CCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHh
Confidence 1 3344332110 1121 0 01234567899999999998764 4455 57888775
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.53 E-value=3.4e-15 Score=160.57 Aligned_cols=268 Identities=15% Similarity=0.080 Sum_probs=166.3
Q ss_pred ccccccchhcchhHhhccCCcccEEEccCCCcccccC----cccCCCC-CCCEEEecCCCcccc-ChhhhcC-----CCC
Q 037138 485 LFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLR----PGISKLV-SLQYLNLSKTSIREL-PKELKAL-----VNL 553 (806)
Q Consensus 485 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp----~~i~~l~-~L~~L~Ls~n~l~~l-p~~i~~L-----~~L 553 (806)
+.++.|.+.+..+.++...++|++|+|++|.+.+..+ ..+..++ +|++|+|++|.++.. +..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4567788888888878878889999999995444433 6778888 999999999999854 5566665 999
Q ss_pred cEEecCCCccccccccc---cccCC-CCCcEEEeecccCCCCCCCCccccCCccchHHHhcCC-CCCCeeeEEecchhhH
Q 037138 554 KYLNLEHSRYLHTIPRQ---LICSF-SMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISL-KHLNVLTIALKSFFAL 628 (806)
Q Consensus 554 ~~L~L~~~~~l~~lp~~---~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~~~~~ 628 (806)
++|++++|.+....+.. .+..+ ++|++|++++|.+....+ ......+..+ ++|+.|+++.|.+...
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~---------~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 153 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS---------SEFKQAFSNLPASITSLNLRGNDLGIK 153 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH---------HHHHHHHTTSCTTCCEEECTTSCGGGS
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH---------HHHHHHHHhCCCceeEEEccCCcCCHH
Confidence 99999999854443332 13444 899999999998865411 2233445564 6999999999987632
Q ss_pred HHhhhchhhcccc-ccceeccCCCCCcccc-c----ccccc-cccceEeeccccCccccceeeecccCCcCC-CCcccc-
Q 037138 629 QRFLSSHELQNCT-KSLNLRYYDDSKSFNI-Y----SLADL-KHLDKLDLIYCRNLEEFKKVMIDFCIKLRE-VTWLVF- 699 (806)
Q Consensus 629 ~~~~~~~~l~~~~-~~l~L~~~~~~~~~~~-~----~l~~l-~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~-~~~l~~- 699 (806)
........+.... .+..|+...|...... . .+..+ ++|++|+|++|..... .... +..+..
T Consensus 154 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~----------~~~~l~~~l~~~ 223 (362)
T 3goz_A 154 SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK----------SYAELAYIFSSI 223 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS----------CHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh----------HHHHHHHHHhcC
Confidence 2111111112111 3444444444332221 1 23334 4888888888752210 0000 112333
Q ss_pred CCCcceEeeecCccchhhhcccccCccccccCCCCcccccceecccccccccccccCCCCCchHHHH---HccCCCCCCC
Q 037138 700 APNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKSIYWNALPSHIWKKL---IMGCAGLKKL 776 (806)
Q Consensus 700 l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~l---l~~c~~L~~L 776 (806)
.++|+.|+|++|.+....+ ..+. ..+..+++|+.|+|+++. +.. .....+..+ +..+++|+.|
T Consensus 224 ~~~L~~L~Ls~N~l~~~~~-----~~l~---~~~~~l~~L~~L~L~~n~-l~~-----i~~~~~~~l~~~~~~l~~L~~L 289 (362)
T 3goz_A 224 PNHVVSLNLCLNCLHGPSL-----ENLK---LLKDSLKHLQTVYLDYDI-VKN-----MSKEQCKALGAAFPNIQKIILV 289 (362)
T ss_dssp CTTCCEEECCSSCCCCCCH-----HHHH---HTTTTTTTCSEEEEEHHH-HTT-----CCHHHHHHHHTTSTTCCEEEEE
T ss_pred CCCceEEECcCCCCCcHHH-----HHHH---HHHhcCCCccEEEeccCC-ccc-----cCHHHHHHHHHHhccCCceEEE
Confidence 4699999999998721100 0111 234556799999999853 111 111223333 5567788889
Q ss_pred CCCCCcccc
Q 037138 777 PLDSNSRKE 785 (806)
Q Consensus 777 ~l~~n~~~~ 785 (806)
++++|....
T Consensus 290 dL~~N~l~~ 298 (362)
T 3goz_A 290 DKNGKEIHP 298 (362)
T ss_dssp CTTSCBCCG
T ss_pred ecCCCcCCC
Confidence 999987543
No 110
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=6.4e-15 Score=156.88 Aligned_cols=200 Identities=16% Similarity=0.148 Sum_probs=123.2
Q ss_pred EEEeeeccccccc-CCCCCCCccccccccccchhcc-hhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCC
Q 037138 461 RRISLMRNKIEKL-SDTPTCPHLLSLFPNINRLKTI-ARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKT 538 (806)
Q Consensus 461 ~~ls~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n 538 (806)
+.+.+.++.+... +....+++|++|++++|.+... .+..+..+++|++|++++|...+..|..++.+++|++|++++|
T Consensus 73 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 73 IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp SEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred eEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 4455555555443 2335677778888877766543 4445677778888888777655566677777778888888777
Q ss_pred -Ccc--ccChhhhcCCCCcEEecCCC-ccccc-cccccccCCC-CCcEEEeeccc--CCCCCCCCccccCCccchHHHhc
Q 037138 539 -SIR--ELPKELKALVNLKYLNLEHS-RYLHT-IPRQLICSFS-MLHVLRMVNCD--YSGKIPLDSILFGGCESLVEELI 610 (806)
Q Consensus 539 -~l~--~lp~~i~~L~~L~~L~L~~~-~~l~~-lp~~~~~~l~-~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~~l~ 610 (806)
.++ .+|..+.++++|++|++++| .+... +|.. +..++ +|++|++++|. +.. ......+.
T Consensus 153 ~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~~~~~~~------------~~l~~~~~ 219 (336)
T 2ast_B 153 SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGYRKNLQK------------SDLSTLVR 219 (336)
T ss_dssp BSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSCGGGSCH------------HHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCCcccCCH------------HHHHHHHh
Confidence 566 36666777778888888777 53222 4433 66677 78888877773 221 12224556
Q ss_pred CCCCCCeeeEEecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCC
Q 037138 611 SLKHLNVLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIK 690 (806)
Q Consensus 611 ~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~ 690 (806)
.+++|+.|+++.|... .......+..+++|++|++++|.....
T Consensus 220 ~~~~L~~L~l~~~~~l--------------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~----------- 262 (336)
T 2ast_B 220 RCPNLVHLDLSDSVML--------------------------KNDCFQEFFQLNYLQHLSLSRCYDIIP----------- 262 (336)
T ss_dssp HCTTCSEEECTTCTTC--------------------------CGGGGGGGGGCTTCCEEECTTCTTCCG-----------
T ss_pred hCCCCCEEeCCCCCcC--------------------------CHHHHHHHhCCCCCCEeeCCCCCCCCH-----------
Confidence 6777777777655420 011112455667888888887742110
Q ss_pred cCCCCccccCCCcceEeeecC
Q 037138 691 LREVTWLVFAPNLKSIHIANC 711 (806)
Q Consensus 691 l~~~~~l~~l~~L~~L~L~~~ 711 (806)
..+..+..+++|+.|+|++|
T Consensus 263 -~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 263 -ETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp -GGGGGGGGCTTCCEEECTTS
T ss_pred -HHHHHHhcCCCCCEEeccCc
Confidence 01123456778888888877
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=3.9e-14 Score=141.41 Aligned_cols=149 Identities=19% Similarity=0.220 Sum_probs=125.6
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccC-cccCCCCCCCEEEecCCC
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLR-PGISKLVSLQYLNLSKTS 539 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~l~~L~~L~Ls~n~ 539 (806)
..+...++.+..+|.. -.++|+.|++++|.+..+++..|..+++|++|+|++|.+ +.+| ..+..+++|++|+|++|.
T Consensus 22 ~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCc
Confidence 4566667777777754 348999999999999999888899999999999999954 5555 557899999999999999
Q ss_pred ccccChh-hhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCee
Q 037138 540 IRELPKE-LKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVL 618 (806)
Q Consensus 540 l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 618 (806)
++.+|.. +..+++|++|++++|. +..+|.. +..+++|++|++++|.+....+ ..+..+++|+.|
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~-------------~~~~~l~~L~~L 164 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKSIPH-------------GAFDRLSSLTHA 164 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCCCCT-------------TTTTTCTTCCEE
T ss_pred CCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCccCH-------------HHHhCCCCCCEE
Confidence 9988765 6899999999999998 5689987 7899999999999998875432 357788999999
Q ss_pred eEEecchh
Q 037138 619 TIALKSFF 626 (806)
Q Consensus 619 ~l~~~~~~ 626 (806)
++..|.+.
T Consensus 165 ~l~~N~~~ 172 (229)
T 3e6j_A 165 YLFGNPWD 172 (229)
T ss_dssp ECTTSCBC
T ss_pred EeeCCCcc
Confidence 99988764
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=2.1e-14 Score=146.56 Aligned_cols=156 Identities=20% Similarity=0.281 Sum_probs=117.6
Q ss_pred cccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChh
Q 037138 467 RNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKE 546 (806)
Q Consensus 467 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~ 546 (806)
.+.+..++....+++|+.|++++|.++.++ .+..+++|++|+|++| .+..+|. +..+++|++|++++|.++.+|..
T Consensus 28 ~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~ 103 (263)
T 1xeu_A 28 KQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNRLKNLNGI 103 (263)
T ss_dssp CSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSCCSCCTTC
T ss_pred CCCcccccchhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCccCCcCcc
Confidence 455555555567788888999888888776 3788889999999988 4555555 88888999999999988888754
Q ss_pred hhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchh
Q 037138 547 LKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFF 626 (806)
Q Consensus 547 i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 626 (806)
.. ++|++|++++|. +..+|. +..+++|++|++++|.+.+. ..+..+++|+.|+++.|.+.
T Consensus 104 ~~--~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~~~---------------~~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 104 PS--ACLSRLFLDNNE-LRDTDS--LIHLKNLEILSIRNNKLKSI---------------VMLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CC--SSCCEEECCSSC-CSBSGG--GTTCTTCCEEECTTSCCCBC---------------GGGGGCTTCCEEECTTSCCC
T ss_pred cc--CcccEEEccCCc-cCCChh--hcCcccccEEECCCCcCCCC---------------hHHccCCCCCEEECCCCcCc
Confidence 33 889999999887 456664 78888999999988887643 25777888888888766554
Q ss_pred hHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeecccc
Q 037138 627 ALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCR 675 (806)
Q Consensus 627 ~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 675 (806)
.. ..+..+++|+.|++++|.
T Consensus 164 ~~-----------------------------~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 164 NT-----------------------------GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp BC-----------------------------TTSTTCCCCCEEEEEEEE
T ss_pred ch-----------------------------HHhccCCCCCEEeCCCCc
Confidence 22 145567788888888875
No 113
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.49 E-value=2.1e-14 Score=165.70 Aligned_cols=269 Identities=16% Similarity=0.147 Sum_probs=142.7
Q ss_pred CCCccccccccccchhcchhHhhccCCcccEEEccCCCcc---cccCcccCCCCCCCEEEecCCCccccChhhhcCCCCc
Q 037138 478 TCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFL---TKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLK 554 (806)
Q Consensus 478 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~---~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~ 554 (806)
++++|++|++++|.+..++ ..+..+++|+.|+++++... ...+..+..+++|+.|+++++....+|..+..+++|+
T Consensus 218 ~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296 (592)
T ss_dssp HCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCC
T ss_pred hCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCc
Confidence 4555666666555555544 33555566666665533111 2233455666677777777765567788888899999
Q ss_pred EEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEe-----------c
Q 037138 555 YLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIAL-----------K 623 (806)
Q Consensus 555 ~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~-----------~ 623 (806)
+|++++|.+....+..++..+++|++|+++++ +.. .........+++|+.|+++. +
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~------------~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~ 363 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGD------------RGLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH------------HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTC
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCH------------HHHHHHHHhCCCCCEEEeecCccccccccccC
Confidence 99999987433333234678899999998833 221 11222335567777777772 3
Q ss_pred chhhHHHhhhchhhccccccceeccCCCC-Cccccccccc-ccccceEeeccc---cC----------------ccccce
Q 037138 624 SFFALQRFLSSHELQNCTKSLNLRYYDDS-KSFNIYSLAD-LKHLDKLDLIYC---RN----------------LEEFKK 682 (806)
Q Consensus 624 ~~~~~~~~~~~~~l~~~~~~l~L~~~~~~-~~~~~~~l~~-l~~L~~L~L~~~---~~----------------~~~L~~ 682 (806)
.+.... +... ...+..+..|....+. .......+.. +++|+.|+++++ .. ...|+.
T Consensus 364 ~~~~~~-~~~l--~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~ 440 (592)
T 3ogk_B 364 LVSQRG-LIAL--AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR 440 (592)
T ss_dssp CCCHHH-HHHH--HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCE
T ss_pred ccCHHH-HHHH--HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCE
Confidence 332211 1000 1112222222222221 1111123333 667777777532 11 122666
Q ss_pred eeecccCC-cCC--CCcc-ccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceecccccccccccccCCC
Q 037138 683 VMIDFCIK-LRE--VTWL-VFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKSIYWNAL 758 (806)
Q Consensus 683 L~l~~c~~-l~~--~~~l-~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~ 758 (806)
|.++.|.+ ++. +..+ ..+++|+.|+|++|.+... .++. .+.++++|++|+|++|+ +..
T Consensus 441 L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~--------~~~~---~~~~~~~L~~L~l~~n~-l~~------ 502 (592)
T 3ogk_B 441 FAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE--------GLME---FSRGCPNLQKLEMRGCC-FSE------ 502 (592)
T ss_dssp EEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH--------HHHH---HHTCCTTCCEEEEESCC-CBH------
T ss_pred EEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH--------HHHH---HHhcCcccCeeeccCCC-CcH------
Confidence 66655543 111 1122 2367888888888775221 1222 12334688888888765 321
Q ss_pred CCchHHHHHccCCCCCCCCCCCCcc
Q 037138 759 PSHIWKKLIMGCAGLKKLPLDSNSR 783 (806)
Q Consensus 759 ~~~~L~~ll~~c~~L~~L~l~~n~~ 783 (806)
..+..++..|++|+.|++++|..
T Consensus 503 --~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 503 --RAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp --HHHHHHHHHCSSCCEEEEESCBC
T ss_pred --HHHHHHHHhcCccCeeECcCCcC
Confidence 22333355677777777777764
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=6e-14 Score=139.09 Aligned_cols=149 Identities=18% Similarity=0.230 Sum_probs=123.7
Q ss_pred ccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCcccc-ChhhhcCCCCcEEecCCC
Q 037138 483 LSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIREL-PKELKALVNLKYLNLEHS 561 (806)
Q Consensus 483 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~L~~~ 561 (806)
+.++++++.++.+|... .++|+.|++++|.+.+..+..+..+++|++|+|++|.++.+ |..+..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 57888888898888753 27899999999965555556899999999999999999976 778999999999999999
Q ss_pred ccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhchhhcccc
Q 037138 562 RYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSHELQNCT 641 (806)
Q Consensus 562 ~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~~ 641 (806)
. +..+|...+..+++|++|++++|.+.+..+ ..+..+++|+.|+++.|.+..+.
T Consensus 91 ~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-------------~~~~~l~~L~~L~L~~N~l~~~~------------ 144 (220)
T 2v9t_B 91 K-ITELPKSLFEGLFSLQLLLLNANKINCLRV-------------DAFQDLHNLNLLSLYDNKLQTIA------------ 144 (220)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------------TTTTTCTTCCEEECCSSCCSCCC------------
T ss_pred c-CCccCHhHccCCCCCCEEECCCCCCCEeCH-------------HHcCCCCCCCEEECCCCcCCEEC------------
Confidence 8 678888878999999999999999887544 46788999999999988765332
Q ss_pred ccceeccCCCCCcccccccccccccceEeecccc
Q 037138 642 KSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCR 675 (806)
Q Consensus 642 ~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 675 (806)
...+..+++|+.|+|++|+
T Consensus 145 ---------------~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 145 ---------------KGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp ---------------TTTTTTCTTCCEEECCSSC
T ss_pred ---------------HHHHhCCCCCCEEEeCCCC
Confidence 1145667889999999886
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=1.4e-13 Score=155.06 Aligned_cols=185 Identities=20% Similarity=0.240 Sum_probs=129.3
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
+.+.+.++.+..+|... +++|++|++++|.++.+| ..+++|++|+|++|. +..+|. ++. +|++|+|++|.+
T Consensus 62 ~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 62 SELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDNNQL 132 (571)
T ss_dssp SEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCCCcC
Confidence 56778888887777543 478899999998888777 347888999999884 444777 655 889999999988
Q ss_pred cccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeE
Q 037138 541 RELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTI 620 (806)
Q Consensus 541 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 620 (806)
+.+|. .+++|++|++++|. +..+|. .+++|++|++++|.+.+ +| . +. ++|+.|++
T Consensus 133 ~~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~L~~-lp-------------~-l~--~~L~~L~L 187 (571)
T 3cvr_A 133 TMLPE---LPALLEYINADNNQ-LTMLPE----LPTSLEVLSVRNNQLTF-LP-------------E-LP--ESLEALDV 187 (571)
T ss_dssp SCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSC-CC-------------C-CC--TTCCEEEC
T ss_pred CCCCC---cCccccEEeCCCCc-cCcCCC----cCCCcCEEECCCCCCCC-cc-------------h-hh--CCCCEEEC
Confidence 88887 67889999998887 455775 46788999998888775 44 1 22 78888888
Q ss_pred EecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCCCccccC
Q 037138 621 ALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFA 700 (806)
Q Consensus 621 ~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l 700 (806)
+.|.+..++. +.. . -....+.|+.|+|++|... ..+..+..+
T Consensus 188 s~N~L~~lp~------~~~-----~-------------L~~~~~~L~~L~Ls~N~l~--------------~lp~~l~~l 229 (571)
T 3cvr_A 188 STNLLESLPA------VPV-----R-------------NHHSEETEIFFRCRENRIT--------------HIPENILSL 229 (571)
T ss_dssp CSSCCSSCCC------CC--------------------------CCEEEECCSSCCC--------------CCCGGGGGS
T ss_pred cCCCCCchhh------HHH-----h-------------hhcccccceEEecCCCcce--------------ecCHHHhcC
Confidence 8776653321 000 0 0112234578888877421 223456678
Q ss_pred CCcceEeeecCccchhh
Q 037138 701 PNLKSIHIANCHFMQEI 717 (806)
Q Consensus 701 ~~L~~L~L~~~~~~~~i 717 (806)
++|+.|+|++|.+...+
T Consensus 230 ~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 230 DPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CTTEEEECCSSSCCHHH
T ss_pred CCCCEEEeeCCcCCCcC
Confidence 99999999999885443
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=2e-15 Score=171.00 Aligned_cols=178 Identities=16% Similarity=0.225 Sum_probs=131.2
Q ss_pred CCCCccccccccccchhcchhHhhccCCcccEEEccCCC-------------cccccCcccCCCCCCCEEE-ecCCCccc
Q 037138 477 PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNG-------------FLTKLRPGISKLVSLQYLN-LSKTSIRE 542 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~-------------~~~~lp~~i~~l~~L~~L~-Ls~n~l~~ 542 (806)
..+++|+.|++++|.++.+|.. ++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~-i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSE-LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHH-HHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 5688999999999999888765 8899999999997773 3455677788888898888 66665554
Q ss_pred cCh------hhhc--CCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCC
Q 037138 543 LPK------ELKA--LVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKH 614 (806)
Q Consensus 543 lp~------~i~~--L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 614 (806)
++. .+.. ...|++|++++|. +..+|. ++.+++|+.|++++|.+. .+| ..++.+++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~--~~~l~~L~~L~Ls~N~l~-~lp-------------~~~~~l~~ 487 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH--LEQLLLVTHLDLSHNRLR-ALP-------------PALAALRC 487 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC--GGGGTTCCEEECCSSCCC-CCC-------------GGGGGCTT
T ss_pred hhhhhhhcccccccCccCceEEEecCCC-CCCCcC--ccccccCcEeecCccccc-ccc-------------hhhhcCCC
Confidence 432 1222 1368899999997 566885 888999999999998877 444 46778888
Q ss_pred CCeeeEEecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCC
Q 037138 615 LNVLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREV 694 (806)
Q Consensus 615 L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~ 694 (806)
|+.|+++.|.+..+ +.+..+++|+.|+|++|... .+..+
T Consensus 488 L~~L~Ls~N~l~~l-----------------------------p~l~~l~~L~~L~Ls~N~l~------------~~~~p 526 (567)
T 1dce_A 488 LEVLQASDNALENV-----------------------------DGVANLPRLQELLLCNNRLQ------------QSAAI 526 (567)
T ss_dssp CCEEECCSSCCCCC-----------------------------GGGTTCSSCCEEECCSSCCC------------SSSTT
T ss_pred CCEEECCCCCCCCC-----------------------------cccCCCCCCcEEECCCCCCC------------CCCCc
Confidence 88888887765432 14566788888888887421 11114
Q ss_pred CccccCCCcceEeeecCcc
Q 037138 695 TWLVFAPNLKSIHIANCHF 713 (806)
Q Consensus 695 ~~l~~l~~L~~L~L~~~~~ 713 (806)
..++.+++|+.|+|++|.+
T Consensus 527 ~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 527 QPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp GGGGGCTTCCEEECTTSGG
T ss_pred HHHhcCCCCCEEEecCCcC
Confidence 4677788888888888877
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=1.9e-13 Score=136.49 Aligned_cols=130 Identities=25% Similarity=0.358 Sum_probs=115.0
Q ss_pred EEEeeecccccccCC--CCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCC
Q 037138 461 RRISLMRNKIEKLSD--TPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKT 538 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n 538 (806)
+.+.+.+|.+..++. ...+++|+.|++++|.+..++...|..+++|++|+|++|.+.+..+..+..+++|++|+|++|
T Consensus 43 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 122 (229)
T 3e6j_A 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122 (229)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC
Confidence 678889999888743 468999999999999999999888999999999999999655444556789999999999999
Q ss_pred CccccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCC
Q 037138 539 SIRELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGK 591 (806)
Q Consensus 539 ~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~ 591 (806)
.++.+|..+..+++|++|++++|. +..+|...+..+++|+.|++++|.+...
T Consensus 123 ~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 123 KLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 999999999999999999999998 5677877689999999999999987743
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.45 E-value=1.2e-13 Score=148.18 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=123.0
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhc-cCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCC
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFD-FMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTS 539 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~ 539 (806)
+.+...++.+..+|.. -.+.++.|++++|.++.++...|. .+++|++|+|++|.+.+..|..|..+++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 4566777778888753 235689999999999999988887 99999999999996655556779999999999999999
Q ss_pred ccccCh-hhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCee
Q 037138 540 IRELPK-ELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVL 618 (806)
Q Consensus 540 l~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 618 (806)
++.+|. .+..+++|++|+|++|.+ ..++...|..+++|++|++++|.+... |. .....+..+++|+.|
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~---------~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQISRF-PV---------ELIKDGNKLPKLMLL 168 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCSC-CG---------GGTC----CTTCCEE
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcc-cEECHHHhCCcccCCEEECCCCcCCee-CH---------HHhcCcccCCcCCEE
Confidence 998876 588999999999999984 556555589999999999999988753 20 111122678999999
Q ss_pred eEEecchhhH
Q 037138 619 TIALKSFFAL 628 (806)
Q Consensus 619 ~l~~~~~~~~ 628 (806)
+++.|.+..+
T Consensus 169 ~L~~N~l~~l 178 (361)
T 2xot_A 169 DLSSNKLKKL 178 (361)
T ss_dssp ECCSSCCCCC
T ss_pred ECCCCCCCcc
Confidence 9998887654
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.41 E-value=2.4e-13 Score=145.92 Aligned_cols=152 Identities=24% Similarity=0.302 Sum_probs=127.0
Q ss_pred EEEeeecccccccCCC--C-CCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecC
Q 037138 461 RRISLMRNKIEKLSDT--P-TCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSK 537 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~--~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~ 537 (806)
+.+.+.+|.+..++.. . .+++|+.|++++|.+..+++..|..+++|++|+|++|.+....+..|..+++|++|+|++
T Consensus 42 ~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 121 (361)
T 2xot_A 42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121 (361)
T ss_dssp SEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCC
Confidence 6788999999887654 3 899999999999999999988899999999999999965555556789999999999999
Q ss_pred CCcccc-ChhhhcCCCCcEEecCCCccccccccccc---cCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCC
Q 037138 538 TSIREL-PKELKALVNLKYLNLEHSRYLHTIPRQLI---CSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLK 613 (806)
Q Consensus 538 n~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 613 (806)
|.|+.+ |..+..+++|++|+|++|. +..+|...+ ..+++|+.|++++|.+... | ...+..++
T Consensus 122 N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-~------------~~~~~~l~ 187 (361)
T 2xot_A 122 NHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKL-P------------LTDLQKLP 187 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCC-C------------HHHHHHSC
T ss_pred CcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCcc-C------------HHHhhhcc
Confidence 999977 5679999999999999998 677888756 6799999999999998753 2 14566666
Q ss_pred C--CCeeeEEecchh
Q 037138 614 H--LNVLTIALKSFF 626 (806)
Q Consensus 614 ~--L~~L~l~~~~~~ 626 (806)
+ |+.|++..|.+.
T Consensus 188 ~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 188 AWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHTTEECCSSCEE
T ss_pred HhhcceEEecCCCcc
Confidence 6 478888888764
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.41 E-value=6.6e-13 Score=130.50 Aligned_cols=130 Identities=24% Similarity=0.371 Sum_probs=112.5
Q ss_pred EEEeeecccccccCC--CCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCC
Q 037138 461 RRISLMRNKIEKLSD--TPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKT 538 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n 538 (806)
+.+.+.++.+..++. ...+++|++|++++|.++.+++..|..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110 (208)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC
Confidence 678888888888765 368999999999999999999988999999999999999555444455789999999999999
Q ss_pred CccccChh-hhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCC
Q 037138 539 SIRELPKE-LKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGK 591 (806)
Q Consensus 539 ~l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~ 591 (806)
.++.+|.. +..+++|++|++++|. +..+|...+..+++|++|++++|.+.+.
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 163 (208)
T 2o6s_A 111 QLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDCT 163 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCeecC
Confidence 99988765 7899999999999998 5677777689999999999999977643
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=3.5e-13 Score=133.55 Aligned_cols=130 Identities=17% Similarity=0.209 Sum_probs=113.1
Q ss_pred EEEeeecccccccCC---CCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecC
Q 037138 461 RRISLMRNKIEKLSD---TPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSK 537 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~ 537 (806)
+.+.+..|.+..++. ...+++|+.|++++|.++.+++..|..+++|++|+|++|.+.+..|..+..+++|++|+|++
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 114 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC
Confidence 578888999888743 36889999999999999999998899999999999999976666666799999999999999
Q ss_pred CCcccc-ChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCC
Q 037138 538 TSIREL-PKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGK 591 (806)
Q Consensus 538 n~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~ 591 (806)
|.++.+ |..+..+++|++|+|++|.+ ..+++..+..+++|++|++++|.+...
T Consensus 115 N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 115 NRITCVGNDSFIGLSSVRLLSLYDNQI-TTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCBCTTSSTTCTTCSEEECTTSCC-CCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CcCCeECHhHcCCCccCCEEECCCCcC-CEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 999977 67799999999999999985 555444589999999999999988754
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.40 E-value=6.6e-13 Score=149.45 Aligned_cols=161 Identities=19% Similarity=0.176 Sum_probs=122.8
Q ss_pred EEEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCC
Q 037138 460 RRRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTS 539 (806)
Q Consensus 460 ~~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~ 539 (806)
.+.+.+.+|.+..+| ..+++|++|++++|.++.+|. +.. +|++|+|++|. +..+|. .+++|++|+|++|.
T Consensus 82 L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~ 151 (571)
T 3cvr_A 82 ITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQ-LTMLPE---LPALLEYINADNNQ 151 (571)
T ss_dssp CSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC
T ss_pred CCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCc-CCCCCC---cCccccEEeCCCCc
Confidence 378899999999988 568999999999999999877 544 99999999995 555887 68999999999999
Q ss_pred ccccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHH-hcCCCCCCee
Q 037138 540 IRELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEE-LISLKHLNVL 618 (806)
Q Consensus 540 l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~~L 618 (806)
++.+|. .+++|++|++++|. ++.+|. +. ++|++|++++|.+. .+|. .... ......|+.|
T Consensus 152 l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~-~lp~----------~~~~L~~~~~~L~~L 212 (571)
T 3cvr_A 152 LTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLE-SLPA----------VPVRNHHSEETEIFF 212 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCS-SCCC----------CC--------CCEEE
T ss_pred cCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCC-chhh----------HHHhhhcccccceEE
Confidence 999997 68999999999998 566887 55 89999999999887 4441 0001 1122334777
Q ss_pred eEEecchhhHHHhhhchhhccccccceeccCCCCCcccccccccccccceEeeccccCc
Q 037138 619 TIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNL 677 (806)
Q Consensus 619 ~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~ 677 (806)
+++.|.+..++ ..+..+++|+.|+|++|...
T Consensus 213 ~Ls~N~l~~lp----------------------------~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 213 RCRENRITHIP----------------------------ENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp ECCSSCCCCCC----------------------------GGGGGSCTTEEEECCSSSCC
T ss_pred ecCCCcceecC----------------------------HHHhcCCCCCEEEeeCCcCC
Confidence 77776654321 13445778888888888643
No 123
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.40 E-value=1.5e-13 Score=158.59 Aligned_cols=17 Identities=18% Similarity=0.053 Sum_probs=11.9
Q ss_pred HccCCCCCCCCCCCCcc
Q 037138 767 IMGCAGLKKLPLDSNSR 783 (806)
Q Consensus 767 l~~c~~L~~L~l~~n~~ 783 (806)
+..|++|+.|++++|..
T Consensus 502 ~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 502 ASKLETMRSLWMSSCSV 518 (594)
T ss_dssp GGGGGGSSEEEEESSCC
T ss_pred HHhCCCCCEEeeeCCCC
Confidence 45677777777777763
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=4.1e-13 Score=128.03 Aligned_cols=143 Identities=17% Similarity=0.194 Sum_probs=114.1
Q ss_pred cccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhh-hc
Q 037138 471 EKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKEL-KA 549 (806)
Q Consensus 471 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i-~~ 549 (806)
...+...++++|+.|++++|.++.++. +....++|++|++++|. +..+ ..++.+++|++|++++|.++.+|..+ +.
T Consensus 10 ~~~~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 10 EQAAQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQA 86 (176)
T ss_dssp HTSCEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred HHHHhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCcccccCcchhhc
Confidence 334445678899999999999988743 33444599999999995 4445 68999999999999999999998765 99
Q ss_pred CCCCcEEecCCCcccccccc-ccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhh
Q 037138 550 LVNLKYLNLEHSRYLHTIPR-QLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFA 627 (806)
Q Consensus 550 L~~L~~L~L~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 627 (806)
+++|++|++++|. ++.+|. ..+..+++|++|++++|.+... | ......+..+++|+.|+++.|....
T Consensus 87 l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~---------~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 87 LPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNK-K---------HYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGS-T---------THHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCc-H---------hHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999999999998 577776 2388999999999999988643 2 1112347889999999999887654
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=8e-13 Score=125.00 Aligned_cols=136 Identities=24% Similarity=0.212 Sum_probs=109.5
Q ss_pred CCCccccccccccchh--cchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccc-cChhhhcCCCCc
Q 037138 478 TCPHLLSLFPNINRLK--TIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRE-LPKELKALVNLK 554 (806)
Q Consensus 478 ~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~-lp~~i~~L~~L~ 554 (806)
..++|+.|++++|.+. .++.. +..+++|++|++++|. +..+ ..++.+++|++|++++|.++. +|..+.++++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 3478999999999987 56554 7889999999999995 4445 688999999999999999997 787788899999
Q ss_pred EEecCCCcccccccc-ccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhh
Q 037138 555 YLNLEHSRYLHTIPR-QLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFA 627 (806)
Q Consensus 555 ~L~L~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 627 (806)
+|++++|. +..+|. ..+..+++|++|++++|.+.+..+ .....+..+++|+.|+++.|....
T Consensus 99 ~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~----------~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 99 HLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLND----------YRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTT----------HHHHHHTTCSSCCEETTEETTSCB
T ss_pred EEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHH----------HHHHHHHhCccCcEecCCCCChhh
Confidence 99999998 566652 338899999999999998875421 112467889999999998876543
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.37 E-value=1e-12 Score=127.20 Aligned_cols=129 Identities=20% Similarity=0.278 Sum_probs=97.2
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhH-hhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCC
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARR-FFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTS 539 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~ 539 (806)
+.+.+.++.+..+|... .++|++|++++|.+..+++. .|..+++|++|+|++|.+.+..|..+..+++|++|+|++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 45666777777776532 34788888888888777764 57888888888888886666667788888888888888888
Q ss_pred ccccChh-hhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCC
Q 037138 540 IRELPKE-LKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGK 591 (806)
Q Consensus 540 l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~ 591 (806)
++.+|.. +..+++|++|++++|++.+..|.. +..+++|++|++++|.+...
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTS-STTCTTCCEEECTTCCBCCS
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHH-hhcCCCCCEEEeCCCCccCc
Confidence 8866544 778888888888888754444543 78888888888888877654
No 127
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.36 E-value=1.5e-13 Score=158.45 Aligned_cols=261 Identities=16% Similarity=0.085 Sum_probs=139.6
Q ss_pred EEEeeeccccccc--CCC-CCCCcccccccccc-chhcc-hhHhhccCCcccEEEccCCCcccc----cCcccCCCCCCC
Q 037138 461 RRISLMRNKIEKL--SDT-PTCPHLLSLFPNIN-RLKTI-ARRFFDFMPSLTVLNLSNNGFLTK----LRPGISKLVSLQ 531 (806)
Q Consensus 461 ~~ls~~~~~~~~~--~~~-~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~~~~~~~----lp~~i~~l~~L~ 531 (806)
+++.+.++.+... ... ..+++|++|++++| .+... .+..+..+++|++|+|++|.+.+. ++.....+++|+
T Consensus 108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~ 187 (594)
T 2p1m_B 108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV 187 (594)
T ss_dssp CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCC
T ss_pred CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCc
Confidence 4556665544321 111 14678888888777 44332 233455778888888888753322 233334667888
Q ss_pred EEEecCCC--cc--ccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHH
Q 037138 532 YLNLSKTS--IR--ELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVE 607 (806)
Q Consensus 532 ~L~Ls~n~--l~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 607 (806)
+|++++|. +. .++.-+.++++|++|++++|.....+|.. +.++++|++|++..+...-. . ........
T Consensus 188 ~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~----~---~~~~~l~~ 259 (594)
T 2p1m_B 188 SLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVR----P---DVYSGLSV 259 (594)
T ss_dssp EEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCC----H---HHHHHHHH
T ss_pred EEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccc----h---hhHHHHHH
Confidence 88888775 22 23333456788888888887545556654 67778888888765532100 0 00112334
Q ss_pred HhcCCCCCCee-eEEecchhhHHHhhhchhhccccccceeccCCCCCccc-c-cccccccccceEeeccccC--------
Q 037138 608 ELISLKHLNVL-TIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFN-I-YSLADLKHLDKLDLIYCRN-------- 676 (806)
Q Consensus 608 ~l~~L~~L~~L-~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~-~-~~l~~l~~L~~L~L~~~~~-------- 676 (806)
.+.++++|+.+ .+.......+... ...+..+..|+...+..... . ..+..+++|++|++++|..
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~-----~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~ 334 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAV-----YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA 334 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGG-----HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH
T ss_pred HHhcCCCcccccCCcccchhhHHHH-----HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHH
Confidence 66777888877 3332222222111 11233333444333332211 1 1245778899999988721
Q ss_pred --ccccceeeeccc--------CCcCCCC--cc-ccCCCcceEeeecCccchhhhcccccCccccccCCCCcccccceec
Q 037138 677 --LEEFKKVMIDFC--------IKLREVT--WL-VFAPNLKSIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLH 743 (806)
Q Consensus 677 --~~~L~~L~l~~c--------~~l~~~~--~l-~~l~~L~~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~ 743 (806)
...|+.|.+.+| ..++... .+ ..+++|+.|.+..|...... +..+ ...+|+|+.|+
T Consensus 335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~---------~~~l--~~~~~~L~~L~ 403 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA---------LITI--ARNRPNMTRFR 403 (594)
T ss_dssp HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHH---------HHHH--HHHCTTCCEEE
T ss_pred HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHH---------HHHH--HhhCCCcceeE
Confidence 233788877443 3332211 11 24788999877666552211 1100 11356888888
Q ss_pred cc
Q 037138 744 LR 745 (806)
Q Consensus 744 L~ 745 (806)
++
T Consensus 404 L~ 405 (594)
T 2p1m_B 404 LC 405 (594)
T ss_dssp EE
T ss_pred ee
Confidence 87
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.36 E-value=2.7e-12 Score=122.46 Aligned_cols=128 Identities=21% Similarity=0.307 Sum_probs=91.9
Q ss_pred EEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCcc
Q 037138 462 RISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIR 541 (806)
Q Consensus 462 ~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~ 541 (806)
.+....+.+..+|.. -.++|+.|++++|.+..+++..|..+++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 11 ~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89 (177)
T ss_dssp EEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc
Confidence 455556666666632 3467888888888887777777778888888888888444333344677888888888888888
Q ss_pred ccChh-hhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCCCC
Q 037138 542 ELPKE-LKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGK 591 (806)
Q Consensus 542 ~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~ 591 (806)
.+|.. +..+++|++|++++|. +..+|...+..+++|++|++++|.+.+.
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 90 SLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 77654 5778888888888886 4567766567788888888888776643
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.36 E-value=2.3e-12 Score=124.61 Aligned_cols=125 Identities=20% Similarity=0.265 Sum_probs=75.7
Q ss_pred EEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCcc
Q 037138 462 RISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIR 541 (806)
Q Consensus 462 ~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~ 541 (806)
.+...++.+..+|.. -.++|+.|++++|.++.++ ..|..+++|++|+|++|.+.+..|..|..+++|++|+|++|.++
T Consensus 14 ~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp EEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 344555555555542 2356666666666666655 34666666666666666444444455666666666666666666
Q ss_pred ccCh-hhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCC
Q 037138 542 ELPK-ELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYS 589 (806)
Q Consensus 542 ~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 589 (806)
.+|. .+..+++|++|+|++|. +..+|...+..+++|+.|++++|.+.
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 5543 46666666666666665 44555555666666666666666554
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=6e-13 Score=125.88 Aligned_cols=128 Identities=23% Similarity=0.218 Sum_probs=111.5
Q ss_pred EEEEeeeccccc--ccCCC-CCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEec
Q 037138 460 RRRISLMRNKIE--KLSDT-PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLS 536 (806)
Q Consensus 460 ~~~ls~~~~~~~--~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls 536 (806)
.+.+.+.++.+. .+|.. ..+++|+.|++++|.++.+ ..+..+++|++|++++|.+.+.+|..+..+++|++|+++
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 477888889887 77765 7889999999999999887 558999999999999997666688888889999999999
Q ss_pred CCCccccC--hhhhcCCCCcEEecCCCcccccccc---ccccCCCCCcEEEeecccCCC
Q 037138 537 KTSIRELP--KELKALVNLKYLNLEHSRYLHTIPR---QLICSFSMLHVLRMVNCDYSG 590 (806)
Q Consensus 537 ~n~l~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~---~~~~~l~~L~~L~l~~~~~~~ 590 (806)
+|.++.+| ..+..+++|++|++++|. +..+|. ..+..+++|++|++++|....
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 99999887 789999999999999998 466665 458999999999999997754
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.33 E-value=9.7e-13 Score=121.65 Aligned_cols=129 Identities=22% Similarity=0.257 Sum_probs=101.5
Q ss_pred CCCccccccccccchh--cchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccc-cChhhhcCCCCc
Q 037138 478 TCPHLLSLFPNINRLK--TIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRE-LPKELKALVNLK 554 (806)
Q Consensus 478 ~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~-lp~~i~~L~~L~ 554 (806)
..++|+.|++++|.+. .++. .+..+++|++|++++|.+ ..+ ..++.+++|++|++++|.++. +|..++.+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l-~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGL-TSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCC-CCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCC-CCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 4578999999999887 5554 578899999999999954 444 678899999999999999997 787788899999
Q ss_pred EEecCCCccccccc--cccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEE
Q 037138 555 YLNLEHSRYLHTIP--RQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIA 621 (806)
Q Consensus 555 ~L~L~~~~~l~~lp--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 621 (806)
+|++++|. +..+| .. ++.+++|++|++++|.+.+..+ .....+..+++|+.|+++
T Consensus 92 ~L~ls~N~-i~~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~----------~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNK-IKDLSTIEP-LKKLENLKSLDLFNCEVTNLND----------YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSC-CCSHHHHGG-GGGCTTCCEEECTTCGGGGSTT----------HHHHHHHHCTTCCEETTB
T ss_pred EEECCCCc-CCChHHHHH-HhhCCCCCEEeCcCCcccchHH----------HHHHHHHHCCCcccccCC
Confidence 99999998 45554 43 8889999999999998775421 111357778888887653
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=4.9e-13 Score=156.37 Aligned_cols=117 Identities=26% Similarity=0.299 Sum_probs=89.1
Q ss_pred chhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEEecCCCccccccccccccC
Q 037138 495 IARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYLNLEHSRYLHTIPRQLICS 574 (806)
Q Consensus 495 ~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~ 574 (806)
+++..|..++.|++|+|++| .+..+|..+..+++|++|+|++|.|+.+|..+++|++|++|+|++|. +..+|.. +++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE-LGS 291 (727)
T ss_dssp -------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS-GGG
T ss_pred cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChh-hcC
Confidence 45566788888888888888 45578888888888888888888888888888888888888888887 4578876 788
Q ss_pred CCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhH
Q 037138 575 FSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFAL 628 (806)
Q Consensus 575 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 628 (806)
|++|++|+|++|.+. .+| ..+..|++|+.|+++.|.+.+.
T Consensus 292 l~~L~~L~L~~N~l~-~lp-------------~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLP-------------WEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp GTTCSEEECCSSCCC-CCC-------------SSTTSCTTCCCEECTTSCCCSH
T ss_pred CCCCCEEECCCCCCC-ccC-------------hhhhcCCCccEEeCCCCccCCC
Confidence 888888888888775 444 3477888888888888877643
No 133
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.33 E-value=5.1e-11 Score=129.11 Aligned_cols=272 Identities=12% Similarity=-0.058 Sum_probs=172.1
Q ss_pred CccccchHHHHHHHHHhc----CCCceEEEEEccCCCCHHHHHHHHHhhcCCC----CCC-CCeEEEEEeCCcc-cHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLG----EERVGIIGLYGMGGVGKTTLLAQINNKFLDT----PND-FDVVIWVVVSKDM-QLERI 204 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~~-F~~~~wv~~s~~~-~~~~~ 204 (806)
..++||+++++++.+++. ....+.+.|+|++|+||||+|+.+++..... ... ...++|++++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 568999999999987774 3456799999999999999999999875110 011 3467888877766 78888
Q ss_pred HHHHHHHhCCCC----CCCHHHHHHHHHHHhCCCcEEEEEecCCCccC---cccccccCCC-CCCcEEEEecCC------
Q 037138 205 QEKIGERIGLLE----NRSLEERASGIFKILSKKKFLLLLDDVWERID---LTKVGIPFPS-KNTSKVVFTTRL------ 270 (806)
Q Consensus 205 ~~~i~~~l~~~~----~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~---~~~~~~~~~~-~~~s~iivTtr~------ 270 (806)
+..++.++.... ..+.......+...+..++.+|||||++.... .+.+...+.. ..+..||+||+.
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~ 179 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDY 179 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhh
Confidence 888888873211 33445667777888877777999999975321 1220111111 257788888874
Q ss_pred -----------ceecccCChHHHHHHHHhhhCC--CccCCCCChHHHHHHHHHHhC---CchH-HHHHhh----hc---C
Q 037138 271 -----------IFKVECLRDKEAWELFLDKVGE--ETLDSHLDIPKLAHTLAKECG---GLPL-ALITTG----LG---C 326 (806)
Q Consensus 271 -----------~~~l~~L~~~e~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~---GlPl-ai~~~g----~~---~ 326 (806)
.+.+++++.++..+++...+.. ..... -.+..+.|++.|+ |.|. |+..+- +. .
T Consensus 180 l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~ 256 (384)
T 2qby_B 180 MEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY---DDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGG 256 (384)
T ss_dssp SCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC---CSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSS
T ss_pred hCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc---CHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCC
Confidence 6789999999999999987531 11111 1456778888888 8876 443333 22 2
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCCccchhhhhhhchhcCChhhHHHHHhhhcCCCCCCcccHHHHHHHHHHcCCccCCCc
Q 037138 327 KKSQEEWSYAIEILRRSASELPGMGKEVYPLLKFSYDSLSSEIFRSCLLYCSLFPEDCKIDKIELIECWIGEGFLNGYEG 406 (806)
Q Consensus 327 ~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~Wia~g~i~~~~~ 406 (806)
.-+.+.+..+++.... ..+.-+++.|+. +.+..+..++....+..+. .......-..| ...
T Consensus 257 ~i~~~~v~~~~~~~~~-------------~~~~~~~~~l~~-~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~--- 317 (384)
T 2qby_B 257 IIRKEHVDKAIVDYEQ-------------ERLIEAVKALPF-HYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKP--- 317 (384)
T ss_dssp CCCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCC---
T ss_pred ccCHHHHHHHHHHHhc-------------chHHHHHHcCCH-HHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCC---
Confidence 3467777777655432 235567788887 5565555555411101111 11111111223 111
Q ss_pred hhHHHhHHHHHHHHHHcccceee
Q 037138 407 AEVHNQGYYIIGILVHACLLEEV 429 (806)
Q Consensus 407 ~~~~~~~~~~~~~L~~~sll~~~ 429 (806)
........++..|...+++...
T Consensus 318 -~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 318 -LSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp -CCHHHHHHHHHHHHHTTSEEEE
T ss_pred -CCHHHHHHHHHHHHhCCCEEEE
Confidence 1224556778999999999874
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.32 E-value=8.7e-13 Score=121.96 Aligned_cols=122 Identities=25% Similarity=0.226 Sum_probs=105.6
Q ss_pred EEEEeeeccccc--ccCCC-CCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEec
Q 037138 460 RRRISLMRNKIE--KLSDT-PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLS 536 (806)
Q Consensus 460 ~~~ls~~~~~~~--~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls 536 (806)
.+.+.+.++.+. .+|.. ..+++|+.|++++|.++.+ ..+..+++|++|++++|.+.+.+|..++.+++|++|+++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 377888888887 67655 7899999999999999888 558999999999999996666688888889999999999
Q ss_pred CCCccccC--hhhhcCCCCcEEecCCCcccccccc---ccccCCCCCcEEEee
Q 037138 537 KTSIRELP--KELKALVNLKYLNLEHSRYLHTIPR---QLICSFSMLHVLRMV 584 (806)
Q Consensus 537 ~n~l~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~---~~~~~l~~L~~L~l~ 584 (806)
+|.++.+| ..++.+++|++|++++|. +..+|. ..+..+++|++|+++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 99999875 789999999999999998 466665 458899999999876
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=1.3e-12 Score=126.39 Aligned_cols=126 Identities=21% Similarity=0.306 Sum_probs=106.4
Q ss_pred ccccccccchhcchhHhhccCCcccEEEccCCCcccccCc--ccCCCCCCCEEEecCCCcccc-ChhhhcCCCCcEEecC
Q 037138 483 LSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRP--GISKLVSLQYLNLSKTSIREL-PKELKALVNLKYLNLE 559 (806)
Q Consensus 483 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~--~i~~l~~L~~L~Ls~n~l~~l-p~~i~~L~~L~~L~L~ 559 (806)
+++++++|.++.+|...+ .+|++|++++|. +..+|. .++.+++|++|+|++|.++.+ |..+..+++|++|+|+
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 789999999988887533 389999999995 455554 389999999999999999977 6789999999999999
Q ss_pred CCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchh
Q 037138 560 HSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFF 626 (806)
Q Consensus 560 ~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 626 (806)
+|. +..+|...+..+++|++|++++|.+.+..| ..+..+++|+.|+++.|.+.
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMP-------------GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCC-CCEECSSSSTTCTTCCEEECCSSCCCEECT-------------TSSTTCTTCCEEECTTCCBC
T ss_pred CCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCH-------------HHhhcCCCCCEEEeCCCCcc
Confidence 998 456666568999999999999999886544 45778899999999988765
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=2.7e-12 Score=124.18 Aligned_cols=126 Identities=22% Similarity=0.268 Sum_probs=107.8
Q ss_pred ccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccCh-hhhcCCCCcEEecCCC
Q 037138 483 LSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPK-ELKALVNLKYLNLEHS 561 (806)
Q Consensus 483 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L~~~ 561 (806)
+++++++|.++.+|... .++|++|+|++| .+..+|..+..+++|++|+|++|.|+.++. .+.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57889999999888753 368999999999 566889999999999999999999998874 6899999999999999
Q ss_pred ccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchh
Q 037138 562 RYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFF 626 (806)
Q Consensus 562 ~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 626 (806)
. +..+|...|..+++|++|++++|.+....+ ..+..+++|+.|+++.|.+.
T Consensus 89 ~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-------------~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 R-LRCIPPRTFDGLKSLRLLSLHGNDISVVPE-------------GAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp C-CCBCCTTTTTTCTTCCEEECCSSCCCBCCT-------------TTTTTCTTCCEEECCSSCEE
T ss_pred c-cCEeCHHHhCCCCCCCEEECCCCCCCeeCh-------------hhhhcCccccEEEeCCCCee
Confidence 8 566776669999999999999999875422 35778899999999988764
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.29 E-value=2e-12 Score=123.24 Aligned_cols=125 Identities=21% Similarity=0.277 Sum_probs=107.6
Q ss_pred EEEeeecccccccCCCCCCC-ccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcc-cCCCCCCCEEEecCC
Q 037138 461 RRISLMRNKIEKLSDTPTCP-HLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPG-ISKLVSLQYLNLSKT 538 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~-i~~l~~L~~L~Ls~n 538 (806)
+.+.+.++.+..++....+. +|+.|++++|.++.+ ..|..+++|++|++++|. +..+|+. ++.+++|++|++++|
T Consensus 22 ~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 22 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNN 98 (176)
T ss_dssp EEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSC
T ss_pred eEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCC
Confidence 88899999998887665555 999999999999887 358999999999999995 5556655 489999999999999
Q ss_pred CccccCh--hhhcCCCCcEEecCCCccccccccc---cccCCCCCcEEEeecccCC
Q 037138 539 SIRELPK--ELKALVNLKYLNLEHSRYLHTIPRQ---LICSFSMLHVLRMVNCDYS 589 (806)
Q Consensus 539 ~l~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~---~~~~l~~L~~L~l~~~~~~ 589 (806)
.++.+|. .++.+++|++|++++|. +..+|.. .+..+++|+.|++++|...
T Consensus 99 ~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 99 SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999997 89999999999999998 4677764 4789999999999988654
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=4.8e-12 Score=143.29 Aligned_cols=123 Identities=19% Similarity=0.204 Sum_probs=92.9
Q ss_pred ccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEEecCC
Q 037138 481 HLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYLNLEH 560 (806)
Q Consensus 481 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~ 560 (806)
.|++|++++|.++.+|. |..+++|++|+|++| .+..+|..++.+++|++|+|++|.|+.+| .++.|++|++|+|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 47888888888887765 788888888888888 44578888888888888888888888887 788888888888888
Q ss_pred Ccccccc--ccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeee
Q 037138 561 SRYLHTI--PRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLT 619 (806)
Q Consensus 561 ~~~l~~l--p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 619 (806)
|.+ ..+ |.. ++.+++|+.|++++|.+.+..| .....+..+++|+.|+
T Consensus 518 N~l-~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~----------~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 518 NRL-QQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG----------IQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCC-CSSSTTGG-GGGCTTCCEEECTTSGGGGSSS----------CTTHHHHHCTTCSEEE
T ss_pred CCC-CCCCCcHH-HhcCCCCCEEEecCCcCCCCcc----------HHHHHHHHCcccCccC
Confidence 874 444 655 7888888888888888776533 1112344467777664
No 139
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.27 E-value=3.8e-10 Score=122.45 Aligned_cols=273 Identities=14% Similarity=0.064 Sum_probs=173.8
Q ss_pred CccccchHHHHHHHHHhcC----CCce--EEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLGE----ERVG--IIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKI 208 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~----~~~~--vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 208 (806)
+.++||+.+++++..++.. .... .+.|+|++|+||||+|+.+++.. ..... ..++|++++...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~-~~~~~-~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY-KDKTT-ARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH-TTSCC-CEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH-hhhcC-eeEEEEeCccCCCHHHHHHHH
Confidence 5789999999999988854 3334 89999999999999999999987 21111 357788888888888999999
Q ss_pred HHHhCCCC---CCCHHHHHHHHHHHhC--CCcEEEEEecCCCc--cCcccccccCCC--C---CCcEEEEecCC------
Q 037138 209 GERIGLLE---NRSLEERASGIFKILS--KKKFLLLLDDVWER--IDLTKVGIPFPS--K---NTSKVVFTTRL------ 270 (806)
Q Consensus 209 ~~~l~~~~---~~~~~~~~~~l~~~l~--~k~~LlvlDdv~~~--~~~~~~~~~~~~--~---~~s~iivTtr~------ 270 (806)
+..++... ..+.....+.+...+. +++.+|||||++.. ..+..+...+.. . .+..||++|+.
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 99886533 3345666666666553 67899999999764 223333333333 2 46778887764
Q ss_pred ------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHh---------CCchHHHHHhh-----h
Q 037138 271 ------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKEC---------GGLPLALITTG-----L 324 (806)
Q Consensus 271 ------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c---------~GlPlai~~~g-----~ 324 (806)
.+.+.+++.++..+++...+.... ....--.+....|++.+ +|.|-.+..+. .
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~ 253 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYA 253 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHH
Confidence 489999999999999988763210 00111256788899999 78875443332 1
Q ss_pred c---C--CCCHHHHHHHHHHHhhcccCCCCCccchhhhhhhchhcCChhhHHHHHhhhcCCC---CCCcccHHHHHHHHH
Q 037138 325 G---C--KKSQEEWSYAIEILRRSASELPGMGKEVYPLLKFSYDSLSSEIFRSCLLYCSLFP---EDCKIDKIELIECWI 396 (806)
Q Consensus 325 ~---~--~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp---~~~~i~~~~li~~Wi 396 (806)
. . .-+.+....+..... ...+.-.+..|+. +.+.++..++.+. .+..+....+...+-
T Consensus 254 a~~~~~~~i~~~~v~~~~~~~~-------------~~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~ 319 (389)
T 1fnn_A 254 AQQNGRKHIAPEDVRKSSKEVL-------------FGISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEESYK 319 (389)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHS-------------CCCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHHHH
T ss_pred HHHhCCCCcCHHHHHHHHHHHh-------------hhhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHHHH
Confidence 1 1 123333333332211 1123344667887 5666666666543 221455555555443
Q ss_pred H----cCCccCCCchhHHHhHHHHHHHHHHcccceee
Q 037138 397 G----EGFLNGYEGAEVHNQGYYIIGILVHACLLEEV 429 (806)
Q Consensus 397 a----~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~ 429 (806)
. .|. ... .......+++.|...+++...
T Consensus 320 ~~~~~~~~-~~~----~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 320 IVCEEYGE-RPR----VHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHTTC-CCC----CHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHcCC-CCC----CHHHHHHHHHHHHhCCCeEEe
Confidence 2 221 111 123456789999999999874
No 140
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.26 E-value=9e-11 Score=127.30 Aligned_cols=273 Identities=16% Similarity=0.085 Sum_probs=172.4
Q ss_pred CccccchHHHHHHHHHhcC----CCceEEEEEccCCCCHHHHHHHHHhhcCCCC---CCCCeEEEEEeCCcccHHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLGE----ERVGIIGLYGMGGVGKTTLLAQINNKFLDTP---NDFDVVIWVVVSKDMQLERIQEK 207 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~F~~~~wv~~s~~~~~~~~~~~ 207 (806)
..++||+.+++++..++.. ...+.+.|+|++|+||||+|+.+++...... +.-...+|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 5789999999999998843 4567899999999999999999998751100 01235678888888888999999
Q ss_pred HHHHhCCCC---CCCHHHHHHHHHHHh--CCCcEEEEEecCCCccC----ccccccc---CCC---CCCcEEEEecCC--
Q 037138 208 IGERIGLLE---NRSLEERASGIFKIL--SKKKFLLLLDDVWERID----LTKVGIP---FPS---KNTSKVVFTTRL-- 270 (806)
Q Consensus 208 i~~~l~~~~---~~~~~~~~~~l~~~l--~~k~~LlvlDdv~~~~~----~~~~~~~---~~~---~~~s~iivTtr~-- 270 (806)
++.+++... ..+..+....+...+ .+++.+|||||++.... .+.+... ... ..+..+|+||+.
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 999987643 344666666777776 45688999999985321 1222111 111 234567777754
Q ss_pred ----------------ceecccCChHHHHHHHHhhhCC--CccCCCCChHHHHHHHHHHhC---CchH-HHHHhh----h
Q 037138 271 ----------------IFKVECLRDKEAWELFLDKVGE--ETLDSHLDIPKLAHTLAKECG---GLPL-ALITTG----L 324 (806)
Q Consensus 271 ----------------~~~l~~L~~~e~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~---GlPl-ai~~~g----~ 324 (806)
.+.+++++.++...++...+.. ...... .+..+.+++.++ |.|- |+.++. .
T Consensus 179 ~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 179 FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVAGEI 255 (387)
T ss_dssp TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 5789999999999999887532 111112 345677888888 9993 333322 1
Q ss_pred c-----CCCCHHHHHHHHHHHhhcccCCCCCccchhhhhhhchhcCChhhHHHHHhhhc-CCCCCCcccHHHHHHHHH--
Q 037138 325 G-----CKKSQEEWSYAIEILRRSASELPGMGKEVYPLLKFSYDSLSSEIFRSCLLYCS-LFPEDCKIDKIELIECWI-- 396 (806)
Q Consensus 325 ~-----~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~-~fp~~~~i~~~~li~~Wi-- 396 (806)
. ..-+.+.+..+++.... ..+.-++..|+. +.+..+...+ ++-....+....+.+...
T Consensus 256 a~~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 256 AERRREERVRREHVYSARAEIER-------------DRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 1 12366777776654422 234556788888 4455444444 332222444443433322
Q ss_pred --HcCCccCCCchhHHHhHHHHHHHHHHcccceee
Q 037138 397 --GEGFLNGYEGAEVHNQGYYIIGILVHACLLEEV 429 (806)
Q Consensus 397 --a~g~i~~~~~~~~~~~~~~~~~~L~~~sll~~~ 429 (806)
..| ..+ -.......+++.|...+++...
T Consensus 322 ~~~~~-~~~----~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 322 TSTLG-LEH----VTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHTT-CCC----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcC-CCC----CCHHHHHHHHHHHHhCCCeEEE
Confidence 122 111 1234566789999999999874
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.24 E-value=1.6e-11 Score=116.99 Aligned_cols=129 Identities=20% Similarity=0.238 Sum_probs=106.6
Q ss_pred cccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChh-hhcCCCCcEEecCC
Q 037138 482 LLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKE-LKALVNLKYLNLEH 560 (806)
Q Consensus 482 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~L~~ 560 (806)
.+.++++++.++.+|... .++|++|++++|.+.+..+..++.+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467888889888888543 47899999999965544455678999999999999999988865 68999999999999
Q ss_pred CccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhh
Q 037138 561 SRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFA 627 (806)
Q Consensus 561 ~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 627 (806)
|. +..+|...+..+++|++|++++|.+.+..+ ..+..+++|+.|+++.|.+..
T Consensus 86 N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-------------~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NK-LQSLPNGVFDKLTQLKELALDTNQLKSVPD-------------GIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT-------------TTTTTCTTCCEEECCSSCBCC
T ss_pred CC-ccccCHHHhhCCcccCEEECcCCcceEeCH-------------HHhcCCcccCEEEecCCCeec
Confidence 98 567777668899999999999998875422 346778999999999987653
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.22 E-value=1.1e-12 Score=127.72 Aligned_cols=113 Identities=20% Similarity=0.262 Sum_probs=94.5
Q ss_pred hhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEEecCCCccccccccccccCCCCC
Q 037138 499 FFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSML 578 (806)
Q Consensus 499 ~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L 578 (806)
.|..+++|++|++++| .+..+| .+..+++|++|++++|.++.+|..+..+++|++|++++|. +..+|. +..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~~--~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLSG--IEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHHH--HHHHHHS
T ss_pred HHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCCc--cccCCCC
Confidence 5888999999999999 455578 8889999999999999999999888888999999999997 566773 7889999
Q ss_pred cEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhH
Q 037138 579 HVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFAL 628 (806)
Q Consensus 579 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 628 (806)
++|++++|.+... .....+..+++|+.|+++.|.+...
T Consensus 118 ~~L~l~~N~i~~~------------~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 118 RVLYMSNNKITNW------------GEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp SEEEESEEECCCH------------HHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CEEECCCCcCCch------------hHHHHHhcCCCCCEEEecCCccccc
Confidence 9999999987642 1124688899999999998877544
No 143
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.21 E-value=9.1e-11 Score=127.21 Aligned_cols=275 Identities=14% Similarity=0.077 Sum_probs=166.2
Q ss_pred CccccchHHHHHHHHHhc----CCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLG----EERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGE 210 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 210 (806)
..++||+.+++++.+++. ......+.|+|++|+||||||+.+++........-..++|+++....+...++..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999886 3456789999999999999999999876110000235678887766677788888887
Q ss_pred HhCCCC---CCCHHHHHHHHHHHhC--CCcEEEEEecCCCcc------CcccccccCC--CCCCcEEEEecCC-------
Q 037138 211 RIGLLE---NRSLEERASGIFKILS--KKKFLLLLDDVWERI------DLTKVGIPFP--SKNTSKVVFTTRL------- 270 (806)
Q Consensus 211 ~l~~~~---~~~~~~~~~~l~~~l~--~k~~LlvlDdv~~~~------~~~~~~~~~~--~~~~s~iivTtr~------- 270 (806)
+++... ..+..+..+.+.+.+. +++.+|||||++... .+..+...+. ...+..+|+||+.
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 775432 3345555666666654 458999999997532 1222211111 1234566777764
Q ss_pred -----------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhC---CchHHH-HHhh----hc-----C
Q 037138 271 -----------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECG---GLPLAL-ITTG----LG-----C 326 (806)
Q Consensus 271 -----------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---GlPlai-~~~g----~~-----~ 326 (806)
.+.+++++.++..+++...+.... ....--.+....+++.++ |.|..+ .++. .. .
T Consensus 180 ~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~ 258 (386)
T 2qby_A 180 DPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDT 258 (386)
T ss_dssp TTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC
Confidence 588999999999999988653111 011122566778888887 998844 3322 11 1
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCCccchhhhhhhchhcCChhhHHHHHhhhcCCCC-C-CcccHHHHHHHHH--H--cCC
Q 037138 327 KKSQEEWSYAIEILRRSASELPGMGKEVYPLLKFSYDSLSSEIFRSCLLYCSLFPE-D-CKIDKIELIECWI--G--EGF 400 (806)
Q Consensus 327 ~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~-~-~~i~~~~li~~Wi--a--~g~ 400 (806)
.-+.+.+..+++.... ..+.-.+..+|. ..+..+..++.+.+ + ..+....+.+... + .|
T Consensus 259 ~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g- 323 (386)
T 2qby_A 259 KVKEEYVYMAKEEIER-------------DRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG- 323 (386)
T ss_dssp SCCHHHHHHHHHHHHH-------------HHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-
T ss_pred ccCHHHHHHHHHHHhh-------------chHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-
Confidence 2356666665544321 235556778887 45555544442211 1 1233333322211 1 12
Q ss_pred ccCCCchhHHHhHHHHHHHHHHcccceee
Q 037138 401 LNGYEGAEVHNQGYYIIGILVHACLLEEV 429 (806)
Q Consensus 401 i~~~~~~~~~~~~~~~~~~L~~~sll~~~ 429 (806)
+.. -.......+++.|...+++...
T Consensus 324 ~~~----~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 324 VEA----VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCC----CCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCC----CCHHHHHHHHHHHHhCCCEEEE
Confidence 111 1123455678999999999763
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.20 E-value=7.8e-12 Score=146.19 Aligned_cols=113 Identities=25% Similarity=0.287 Sum_probs=90.2
Q ss_pred CCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEE
Q 037138 477 PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYL 556 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L 556 (806)
..+++|+.|+|++|.+..++...+ .+++|++|+|++|. +..+|..|++|++|++|+|++|.|+.+|..+++|++|++|
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred ccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 567788888888888877777644 78888888888884 4478888888888888888888888888888888888888
Q ss_pred ecCCCccccccccccccCCCCCcEEEeecccCCCCCC
Q 037138 557 NLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIP 593 (806)
Q Consensus 557 ~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 593 (806)
+|++|. ++.+|.. |+++++|++|+|++|.+.+.+|
T Consensus 299 ~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 299 YFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp ECCSSC-CCCCCSS-TTSCTTCCCEECTTSCCCSHHH
T ss_pred ECCCCC-CCccChh-hhcCCCccEEeCCCCccCCCCh
Confidence 888887 5678876 7888888888888888776443
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.19 E-value=3.3e-11 Score=114.27 Aligned_cols=104 Identities=21% Similarity=0.255 Sum_probs=87.2
Q ss_pred ccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChh-hhcCCCCcEEecCCC
Q 037138 483 LSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKE-LKALVNLKYLNLEHS 561 (806)
Q Consensus 483 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~L~~~ 561 (806)
+.+++++|.+..+|... .++|++|+|++|.+.+..|..+..+++|++|+|++|.|+.+|.. +.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888888888888753 37899999999966666677889999999999999999988876 588999999999999
Q ss_pred ccccccccccccCCCCCcEEEeecccCCC
Q 037138 562 RYLHTIPRQLICSFSMLHVLRMVNCDYSG 590 (806)
Q Consensus 562 ~~l~~lp~~~~~~l~~L~~L~l~~~~~~~ 590 (806)
+ +..+|...+..+++|++|++++|.+..
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred c-cceeCHHHhccccCCCEEEeCCCCccc
Confidence 7 567787668889999999999988764
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.18 E-value=3.8e-11 Score=113.38 Aligned_cols=107 Identities=20% Similarity=0.255 Sum_probs=86.7
Q ss_pred ccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChh-hhcCCCCcEEecC
Q 037138 481 HLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKE-LKALVNLKYLNLE 559 (806)
Q Consensus 481 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~L~ 559 (806)
..+++++++|.++.+|... .++|++|+|++|.+.+..|..+..+++|++|+|++|.|+.+|.. +..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3567888888888887653 37889999999966665677888999999999999999988775 5889999999999
Q ss_pred CCccccccccccccCCCCCcEEEeecccCCCC
Q 037138 560 HSRYLHTIPRQLICSFSMLHVLRMVNCDYSGK 591 (806)
Q Consensus 560 ~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~ 591 (806)
+|+ +..+|...+..+++|++|++++|.+...
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQ-LKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCc-cCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 997 5667776688899999999998887643
No 147
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.15 E-value=2.3e-10 Score=115.30 Aligned_cols=165 Identities=16% Similarity=0.164 Sum_probs=109.7
Q ss_pred CccccchHHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCC-------------------CeEEEEE
Q 037138 135 PTIVGLNSTLEKVWRCLGEER-VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDF-------------------DVVIWVV 194 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F-------------------~~~~wv~ 194 (806)
..++||+..++.+..++.... .+.+.|+|++|+||||+|+.+++... ....+ ...+.+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGITATPCGVCDNCREIEQGRFVDLIEID 101 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH-CTTCSCSSCCSCSHHHHHHHTTCCSSEEEEE
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCCCCCcccHHHHHHhccCCcceEEec
Confidence 458999999999999986653 45889999999999999999998762 11111 0111111
Q ss_pred eCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-----hCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEE
Q 037138 195 VSKDMQLERIQEKIGERIGLLENRSLEERASGIFKI-----LSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVF 266 (806)
Q Consensus 195 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~-----l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iiv 266 (806)
..... .......+.+. ..+++.+||+||++.. ..++.+...+.. ..+..+|+
T Consensus 102 ~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~ 161 (250)
T 1njg_A 102 AASRT--------------------KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 161 (250)
T ss_dssp TTCGG--------------------GHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEE
T ss_pred Ccccc--------------------cHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEE
Confidence 11111 11111122222 2357899999999753 334444443433 45788888
Q ss_pred ecCC-------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhh
Q 037138 267 TTRL-------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITTG 323 (806)
Q Consensus 267 Ttr~-------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g 323 (806)
||+. .+.+++++.++..+++...+....... -.+....|++.|+|.|..+..+.
T Consensus 162 ~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~~~~~~~~ 228 (250)
T 1njg_A 162 ATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLT 228 (250)
T ss_dssp EESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB---CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred EeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 8865 688999999999999988774322111 14667899999999999887765
No 148
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.12 E-value=1.7e-10 Score=99.50 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=57.3
Q ss_pred cccccchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhchHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 037138 3 LGKAAYISELEDNLDALLTELQKLIEAKNDVMTRVVNAEQQQQ-LRRLNKVQGWLSRVEGAETEIGELITDSTREIQK 79 (806)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~~~~ae~~~~-~~~~~~v~~Wl~~l~~~~~~~~d~ld~~~~~~~~ 79 (806)
..|+.++.+++++++.|+++|+.|+++|. +|+.+ . ...++.++.|+++||+++||+||++|+|.++...
T Consensus 15 ~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~-------da~~~-~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~~ 84 (115)
T 3qfl_A 15 TEEFKLHKGVKKNIEDLGKELESMNAALI-------KIGEV-PREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHTTS-CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHH-------HHHHh-ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45778888999999999999988888854 46654 2 2367899999999999999999999999998753
No 149
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.11 E-value=2.9e-10 Score=112.79 Aligned_cols=170 Identities=14% Similarity=0.179 Sum_probs=111.6
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCC-CeEEEEEeCCcccHHHHHHHHHHHhC
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDF-DVVIWVVVSKDMQLERIQEKIGERIG 213 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~ 213 (806)
..++|++..++++.+++.....+.+.|+|++|+|||++|+.+++... ...+ ...+.+..+...+...+...+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGGGGGEEEEETTCTTCHHHHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh--ccccccceEEeccccccChHHHHHHHHHHhc
Confidence 45899999999999999877666699999999999999999998751 1112 23444554444343332222211111
Q ss_pred CCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-------------ceecccC
Q 037138 214 LLENRSLEERASGIFKILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL-------------IFKVECL 277 (806)
Q Consensus 214 ~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~-------------~~~l~~L 277 (806)
.. ..-.+++.+||+||++.. ...+.+...+.. ..+..+|+||+. .+.+.++
T Consensus 95 ~~-------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~ 161 (226)
T 2chg_A 95 TA-------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPV 161 (226)
T ss_dssp SC-------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCC
T ss_pred cc-------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCC
Confidence 00 011367899999999753 223333333333 456788888876 6789999
Q ss_pred ChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHh
Q 037138 278 RDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITT 322 (806)
Q Consensus 278 ~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 322 (806)
+.++...++...+....... -.+....+++.++|.|..+..+
T Consensus 162 ~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 162 PKEAMKKRLLEICEKEGVKI---TEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp CHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999988764322111 1466788999999999865443
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.08 E-value=6.3e-12 Score=122.30 Aligned_cols=135 Identities=20% Similarity=0.231 Sum_probs=108.0
Q ss_pred CCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEE
Q 037138 477 PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYL 556 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L 556 (806)
..+++|++|++++|.+..++ .+..+++|++|++++| .+..+|..+..+++|++|++++|.++.+| .+..+++|++|
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred hcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 56889999999999999887 5899999999999999 56688988888899999999999999988 69999999999
Q ss_pred ecCCCcccccccc-ccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeee
Q 037138 557 NLEHSRYLHTIPR-QLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLT 619 (806)
Q Consensus 557 ~L~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 619 (806)
++++|. +..+|. ..+..+++|++|++++|.+.+..|.... ........+..+++|+.|+
T Consensus 121 ~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~---~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 121 YMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA---TSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTT---HHHHHHHHHHHCSSCSEEC
T ss_pred ECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccc---hHHHHHHHHHhCCCcEEEC
Confidence 999998 455554 3388999999999999987643221000 0011123467888998886
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=4.3e-10 Score=106.52 Aligned_cols=106 Identities=19% Similarity=0.299 Sum_probs=89.6
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCc-ccCCCCCCCEEEecCCC
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRP-GISKLVSLQYLNLSKTS 539 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~l~~L~~L~Ls~n~ 539 (806)
+.+.+.++.+..+|... .++|+.|++++|.+..+++..|..+++|++|+|++|+ +..+|. .+..+++|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCc
Confidence 35667778888887643 3899999999999999988889999999999999995 455555 46899999999999999
Q ss_pred ccccChh-hhcCCCCcEEecCCCcccccccc
Q 037138 540 IRELPKE-LKALVNLKYLNLEHSRYLHTIPR 569 (806)
Q Consensus 540 l~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~ 569 (806)
|+.+|.. +..+++|++|++++|.+ ...+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~-~c~~~ 122 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPW-DCECR 122 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCB-CTTBG
T ss_pred cceeCHHHhccccCCCEEEeCCCCc-ccccc
Confidence 9999876 89999999999999984 44443
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.04 E-value=4.8e-10 Score=105.77 Aligned_cols=103 Identities=18% Similarity=0.256 Sum_probs=89.0
Q ss_pred EEEeeecccccccCCCCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 461 RRISLMRNKIEKLSDTPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
+.+.+.++.+..+|... .++|+.|++++|.++.+++..|..+++|++|+|++|++.+..|..+..+++|++|+|++|.|
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 45777888888887643 48999999999999999888899999999999999965544445578999999999999999
Q ss_pred cccChh-hhcCCCCcEEecCCCccc
Q 037138 541 RELPKE-LKALVNLKYLNLEHSRYL 564 (806)
Q Consensus 541 ~~lp~~-i~~L~~L~~L~L~~~~~l 564 (806)
+.+|.. +..+++|++|+|++|.+.
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 998875 899999999999999853
No 153
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=1.4e-09 Score=114.60 Aligned_cols=171 Identities=16% Similarity=0.198 Sum_probs=111.1
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCC-CeEEEEEeCCcccHHHHHHHHHHHhC
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDF-DVVIWVVVSKDMQLERIQEKIGERIG 213 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~ 213 (806)
..++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++... ...+ ..+++++.++..+...+ ++++..+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~ 97 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL--GRSYADGVLELNASDDRGIDVV-RNQIKHFA 97 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGHHHHEEEECTTSCCSHHHH-HTHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCCEEEecCccccChHHH-HHHHHHHH
Confidence 45899999999999999877666699999999999999999998751 1111 12444544443333222 11221111
Q ss_pred CCCCCCHHHHHHHHHHHh-CCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-------------ceeccc
Q 037138 214 LLENRSLEERASGIFKIL-SKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL-------------IFKVEC 276 (806)
Q Consensus 214 ~~~~~~~~~~~~~l~~~l-~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~-------------~~~l~~ 276 (806)
.. ...+ .+++.++|+||++.. ..++.+...+.. ..++.+|+||+. .+.+.+
T Consensus 98 ~~------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~ 165 (323)
T 1sxj_B 98 QK------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSK 165 (323)
T ss_dssp HB------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred hc------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecC
Confidence 00 0012 456899999999753 233334333333 456788888865 689999
Q ss_pred CChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHH-HHHhh
Q 037138 277 LRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLA-LITTG 323 (806)
Q Consensus 277 L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPla-i~~~g 323 (806)
++.++..+++...+....... -.+....|++.|+|.|.. +..+.
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 166 LSDEDVLKRLLQIIKLEDVKY---TNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp CCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999988764322111 146678999999999954 44444
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.92 E-value=1.9e-09 Score=113.93 Aligned_cols=250 Identities=15% Similarity=0.109 Sum_probs=120.9
Q ss_pred CCccccccccccchh--cchhHhhccCCcccEEEccCCCcccccCcccCC--------CCCCCEEEecCCCccccCh-hh
Q 037138 479 CPHLLSLFPNINRLK--TIARRFFDFMPSLTVLNLSNNGFLTKLRPGISK--------LVSLQYLNLSKTSIRELPK-EL 547 (806)
Q Consensus 479 ~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~--------l~~L~~L~Ls~n~l~~lp~-~i 547 (806)
+++|++|+|++|.+. ...... ++.++.+.+..+ .+ -+..|.+ |.+|+.|+|.+ .++.++. .|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~-~I--~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMAN-FV--PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTT-EE--CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCcccc---cccccccccccc-cc--CHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 667788888887766 222211 122333443333 11 1123334 56666666655 5555543 35
Q ss_pred hcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCC-CCCCCCccccC------------CccchHH----Hhc
Q 037138 548 KALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYS-GKIPLDSILFG------------GCESLVE----ELI 610 (806)
Q Consensus 548 ~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~------------~~~~~~~----~l~ 610 (806)
.+|++|+.|++++|. +..++...|..+.++..+....+... +........+. ....... ...
T Consensus 121 ~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~ 199 (329)
T 3sb4_A 121 KGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGL 199 (329)
T ss_dssp TTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTC
T ss_pred hcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhccc
Confidence 556666666666554 33455554555555544443321000 00000000000 0001111 111
Q ss_pred CCCCCCeeeEEecchhhHHHhhhchhhccccccceeccCCC-CCcccccccccccccceEeeccccCccccceeeecccC
Q 037138 611 SLKHLNVLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDD-SKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCI 689 (806)
Q Consensus 611 ~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~-~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~ 689 (806)
...++..+.+..+-.......+ ...+..+..+....+ ....+...+.++++|+.|+|.++ ++.+.
T Consensus 200 ~~~~~~~l~~~~~l~~~~~~~l----~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-----i~~I~----- 265 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNADFKLI----RDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-----LKTIG----- 265 (329)
T ss_dssp CGGGCSEEEEEECCCHHHHHHH----HHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-----CCEEC-----
T ss_pred CccccceEEEeeeecHHHHHHH----HHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-----cceeh-----
Confidence 2445566666543221111000 012444555555553 33344447888999999999875 22211
Q ss_pred CcCCCCccccCCCcc-eEeeecCccchhhhcccccCccccccCCCCcccccceecccccccccccccCCCCCchHHHHHc
Q 037138 690 KLREVTWLVFAPNLK-SIHIANCHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKSIYWNALPSHIWKKLIM 768 (806)
Q Consensus 690 ~l~~~~~l~~l~~L~-~L~L~~~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~ll~ 768 (806)
...+..+++|+ .|.+.+ .. ..++. ..+.++++|+.|++++ .+++.++... +.
T Consensus 266 ----~~aF~~~~~L~~~l~l~~-~l----------~~I~~--~aF~~c~~L~~l~l~~-n~i~~I~~~a---------F~ 318 (329)
T 3sb4_A 266 ----QRVFSNCGRLAGTLELPA-SV----------TAIEF--GAFMGCDNLRYVLATG-DKITTLGDEL---------FG 318 (329)
T ss_dssp ----TTTTTTCTTCCEEEEECT-TC----------CEECT--TTTTTCTTEEEEEECS-SCCCEECTTT---------TC
T ss_pred ----HHHhhCChhccEEEEEcc-cc----------eEEch--hhhhCCccCCEEEeCC-CccCccchhh---------hc
Confidence 12456678888 888877 32 23433 3555667888888864 5666665322 45
Q ss_pred cCCCCCCCC
Q 037138 769 GCAGLKKLP 777 (806)
Q Consensus 769 ~c~~L~~L~ 777 (806)
+|++|+.+.
T Consensus 319 ~~~~L~~ly 327 (329)
T 3sb4_A 319 NGVPSKLIY 327 (329)
T ss_dssp TTCCCCEEE
T ss_pred CCcchhhhc
Confidence 777877664
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.87 E-value=3.8e-09 Score=112.51 Aligned_cols=103 Identities=18% Similarity=0.191 Sum_probs=79.7
Q ss_pred ccccccc-chhcchhHhhccCCcccEEEccC-CCcccccCcccCCCCCCCEEEecCCCccccCh-hhhcCCCCcEEecCC
Q 037138 484 SLFPNIN-RLKTIARRFFDFMPSLTVLNLSN-NGFLTKLRPGISKLVSLQYLNLSKTSIRELPK-ELKALVNLKYLNLEH 560 (806)
Q Consensus 484 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~-~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L~~ 560 (806)
.++++++ .++.+|. +..+++|++|+|++ |.+.+..|..|+.|++|++|+|++|.|+.+|. .|.+|++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577776 7888877 88888899999986 74444444678888999999999998887654 578889999999998
Q ss_pred CccccccccccccCCCCCcEEEeecccCCC
Q 037138 561 SRYLHTIPRQLICSFSMLHVLRMVNCDYSG 590 (806)
Q Consensus 561 ~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~ 590 (806)
|+ +..+|...+..++ |+.|++.+|.+..
T Consensus 90 N~-l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NA-LESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SC-CSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred Cc-cceeCHHHcccCC-ceEEEeeCCCccC
Confidence 87 5677776566555 8999988887764
No 156
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.85 E-value=1.5e-08 Score=104.24 Aligned_cols=153 Identities=12% Similarity=0.122 Sum_probs=102.1
Q ss_pred ccccchHHHHHHHHHhc----CCCceEEEEEccCCCCHHHHHHHHHhhcCCCCC-----CCCeEEEEEeCCcccHHHHHH
Q 037138 136 TIVGLNSTLEKVWRCLG----EERVGIIGLYGMGGVGKTTLLAQINNKFLDTPN-----DFDVVIWVVVSKDMQLERIQE 206 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-----~F~~~~wv~~s~~~~~~~~~~ 206 (806)
.+.|||++++++...|. .+..+.+.|+|++|+|||++|+.|++....... .| .+++|++....+...++.
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHH
Confidence 47899999999988774 467788999999999999999999998721111 12 456777777788889999
Q ss_pred HHHHHhCCCC---CCCHHHHHHHHHHHh---CCCcEEEEEecCCCccCcccccccCC--CCCCc--EEEEecCC------
Q 037138 207 KIGERIGLLE---NRSLEERASGIFKIL---SKKKFLLLLDDVWERIDLTKVGIPFP--SKNTS--KVVFTTRL------ 270 (806)
Q Consensus 207 ~i~~~l~~~~---~~~~~~~~~~l~~~l---~~k~~LlvlDdv~~~~~~~~~~~~~~--~~~~s--~iivTtr~------ 270 (806)
.|++++.... ....+ ....+...+ .+++++++||+++...+.+.+...+. ....+ .||.++..
T Consensus 100 ~I~~~L~g~~~~~~~~~~-~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 100 KIWFAISKENLCGDISLE-ALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHHSCCC--CCCCHH-HHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHHhcCCCCCchHHHH-HHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 9999996543 22222 233333333 46789999999976542222222221 11223 23333322
Q ss_pred -------------ceecccCChHHHHHHHHhhh
Q 037138 271 -------------IFKVECLRDKEAWELFLDKV 290 (806)
Q Consensus 271 -------------~~~l~~L~~~e~~~lf~~~~ 290 (806)
.+.+++++.+|-.+++.+++
T Consensus 179 ~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 179 QINIMPSLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred hcchhhhccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 48899999999999998876
No 157
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.83 E-value=3.1e-08 Score=104.29 Aligned_cols=257 Identities=15% Similarity=0.077 Sum_probs=136.3
Q ss_pred CccccchHHHHHHHHHhcC-----CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLGE-----ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIG 209 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 209 (806)
..++|++..++++...+.. .....+.|+|++|+|||++|+.+++.. .. ..++++.+......++...
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~---~~~~~~~~~~~~~~~l~~~-- 83 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GV---NLRVTSGPAIEKPGDLAAI-- 83 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TC---CEEEECTTTCCSHHHHHHH--
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEeccccCChHHHHHH--
Confidence 4689999999988887742 344678899999999999999999876 22 2344544433222222111
Q ss_pred HHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc--CcccccccC--------CC-----------CCCcEEEEec
Q 037138 210 ERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERI--DLTKVGIPF--------PS-----------KNTSKVVFTT 268 (806)
Q Consensus 210 ~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~--~~~~~~~~~--------~~-----------~~~s~iivTt 268 (806)
+... ..++.+|+|||+.... ....+...+ .. ..+..+|.||
T Consensus 84 -----------------l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t 145 (324)
T 1hqc_A 84 -----------------LANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT 145 (324)
T ss_dssp -----------------HTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEE
T ss_pred -----------------HHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeC
Confidence 1110 1356789999997532 111111000 00 1235677766
Q ss_pred CC--------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhh-----hc---C
Q 037138 269 RL--------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITTG-----LG---C 326 (806)
Q Consensus 269 r~--------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g-----~~---~ 326 (806)
.. .+.+.+++.+|...++...+...... --.+....+++.++|.|-.+..+. .. .
T Consensus 146 ~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~ 222 (324)
T 1hqc_A 146 TRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR---ITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAG 222 (324)
T ss_dssp SCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTS
T ss_pred CCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhc
Confidence 53 67899999999999998877543211 125678899999999998775554 11 1
Q ss_pred --CCCHHHHHHHHHHHhhcccCCCCCccchhhhhhhchhcCChhhHHHHHhhhcCCCCCCcccHHHHHH----HHHHcCC
Q 037138 327 --KKSQEEWSYAIEILRRSASELPGMGKEVYPLLKFSYDSLSSEIFRSCLLYCSLFPEDCKIDKIELIE----CWIGEGF 400 (806)
Q Consensus 327 --~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~----~Wia~g~ 400 (806)
.-+.+....++..+..........+..+...+.-.|..=+. ....+-..++ +++..+.+ +-+..|+
T Consensus 223 ~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~-~~~~~a~~lg-------i~~~tl~~~l~~~~i~~~l 294 (324)
T 1hqc_A 223 EEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPV-GLATLATALS-------EDPGTLEEVHEPYLIRQGL 294 (324)
T ss_dssp CSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCC-CHHHHHHHTT-------SCHHHHHHHTHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCc-hHHHHHHHhC-------CCHHHHHHHHhHHHHHhcc
Confidence 12445555544433211100000001111111111111111 0111222222 23333322 2345688
Q ss_pred ccCCC-chhHHHhHHHHHH-HHHHccccee
Q 037138 401 LNGYE-GAEVHNQGYYIIG-ILVHACLLEE 428 (806)
Q Consensus 401 i~~~~-~~~~~~~~~~~~~-~L~~~sll~~ 428 (806)
+.... +....+.|..+++ ++.+++++|+
T Consensus 295 i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 295 LKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp EEEETTEEEECHHHHHHTTCCCCC------
T ss_pred hhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 76544 5666778888887 7888888774
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.79 E-value=7.7e-08 Score=103.84 Aligned_cols=242 Identities=13% Similarity=0.162 Sum_probs=144.6
Q ss_pred CCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEE
Q 037138 477 PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYL 556 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L 556 (806)
.++ +|+.+.+..+ ++.+....|.++ +|+.+.+..+ ....-+..|.+|.+|+.+++++|+++.+|...-...+|+.+
T Consensus 133 ~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~-l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l 208 (401)
T 4fdw_A 133 RNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST-LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEV 208 (401)
T ss_dssp TTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT-CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEE
T ss_pred ccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC-ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEE
Confidence 444 6888887765 777888878875 6899998875 54445567888999999999999898888765557899999
Q ss_pred ecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhchh
Q 037138 557 NLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSHE 636 (806)
Q Consensus 557 ~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~ 636 (806)
.+..+ +..++...|.++++|+.+.+..+ +. .++. ..+.. .+|+.+.+. +.+..+. ...
T Consensus 209 ~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~------------~aF~~-~~L~~i~lp-~~i~~I~----~~a 266 (401)
T 4fdw_A 209 LLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQ------------EAFRE-SGITTVKLP-NGVTNIA----SRA 266 (401)
T ss_dssp ECCTT--CCEECTTTTTTCTTCCCEECCTT-CC-EECT------------TTTTT-CCCSEEEEE-TTCCEEC----TTT
T ss_pred EeCCc--hheehhhHhhCCCCCCEEecCCC-cc-Cccc------------ccccc-CCccEEEeC-CCccEEC----hhH
Confidence 99865 67788888888999999988754 21 1110 12333 466777663 2222221 223
Q ss_pred hccccccceeccCCCCCc------ccccccccccccceEeeccccCccccceeeecccCCcCCCCccccCCCcceEeeec
Q 037138 637 LQNCTKSLNLRYYDDSKS------FNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFAPNLKSIHIAN 710 (806)
Q Consensus 637 l~~~~~~l~L~~~~~~~~------~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~ 710 (806)
+.+|..+..+....+... .....+..+++|+.+.|..+ ++.+. ...+..+++|+.+.|.+
T Consensus 267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-----i~~I~---------~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-----IRILG---------QGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-----CCEEC---------TTTTTTCCSCCEEEECT
T ss_pred hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-----eEEEh---------hhhhcCCCCccEEEECc
Confidence 334444444443333221 22235666666666666532 11110 12345667788888855
Q ss_pred CccchhhhcccccCccccccCCCCcccccceecccccccccccccCCCCCchHHHHHccCC-CCCCCCCCCCc
Q 037138 711 CHFMQEIISARKLGEVPELIGNLKPFAKLQYLHLRALPSLKSIYWNALPSHIWKKLIMGCA-GLKKLPLDSNS 782 (806)
Q Consensus 711 ~~~~~~i~~~~~~~~ip~~~~~~~~~~~L~~L~L~~~~~L~~l~~~~~~~~~L~~ll~~c~-~L~~L~l~~n~ 782 (806)
+ . ..++. ..+.++ +|+.+.+.+. .+..+... . +.+|+ +++.|.+..+.
T Consensus 333 ~-l----------~~I~~--~aF~~~-~L~~l~l~~n-~~~~l~~~--~-------F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 333 N-V----------TQINF--SAFNNT-GIKEVKVEGT-TPPQVFEK--V-------WYGFPDDITVIRVPAES 381 (401)
T ss_dssp T-C----------CEECT--TSSSSS-CCCEEEECCS-SCCBCCCS--S-------CCCSCTTCCEEEECGGG
T ss_pred c-c----------cEEcH--HhCCCC-CCCEEEEcCC-CCcccccc--c-------ccCCCCCccEEEeCHHH
Confidence 4 1 22332 244455 7888888763 33333322 1 23453 56666665554
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=9.2e-09 Score=109.54 Aligned_cols=102 Identities=19% Similarity=0.200 Sum_probs=87.8
Q ss_pred Eeeecc-cccccCCCCCCCccccccccc-cchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc
Q 037138 463 ISLMRN-KIEKLSDTPTCPHLLSLFPNI-NRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI 540 (806)
Q Consensus 463 ls~~~~-~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l 540 (806)
+...++ .+..+|....+++|+.|+|++ |.+..+++..|..+++|++|+|++|.+.+..|..|.+|++|++|+|++|.|
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 445555 678888777888999999996 999999998999999999999999977777777899999999999999999
Q ss_pred cccChhhhcCCCCcEEecCCCccc
Q 037138 541 RELPKELKALVNLKYLNLEHSRYL 564 (806)
Q Consensus 541 ~~lp~~i~~L~~L~~L~L~~~~~l 564 (806)
+.+|..+....+|+.|+|.+|.+.
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ceeCHHHcccCCceEEEeeCCCcc
Confidence 999876555445999999999753
No 160
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=1.1e-08 Score=107.80 Aligned_cols=167 Identities=15% Similarity=0.187 Sum_probs=109.2
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCC-CeEEEEEeCCcccHHHHHHHHHHHhC
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDF-DVVIWVVVSKDMQLERIQEKIGERIG 213 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~ 213 (806)
..++|++..++.+..++..+..+.+.++|++|+||||+|+.+++... ...+ ...+.+..++..+...+...+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~----- 97 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF--GENWRHNFLELNASDERGINVIREKV----- 97 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH--GGGHHHHEEEEETTCHHHHHTTHHHH-----
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCceEEeeccccCchHHHHHHH-----
Confidence 45899999999999999877766799999999999999999998751 1111 123444444322211111111
Q ss_pred CCCCCCHHHHHHHHHHH--h-CCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-------------ceec
Q 037138 214 LLENRSLEERASGIFKI--L-SKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL-------------IFKV 274 (806)
Q Consensus 214 ~~~~~~~~~~~~~l~~~--l-~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~-------------~~~l 274 (806)
...... + .+++.++|+||++.. ...+.+...+.. ..++++|+||.. .+.+
T Consensus 98 -----------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~ 166 (327)
T 1iqp_A 98 -----------KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRF 166 (327)
T ss_dssp -----------HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEEC
T ss_pred -----------HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEe
Confidence 111110 1 267889999999753 233334333333 456788888865 6789
Q ss_pred ccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHh
Q 037138 275 ECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITT 322 (806)
Q Consensus 275 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 322 (806)
.+++.++...++...+....... -.+....|++.++|.|..+..+
T Consensus 167 ~~l~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~~~~~ 211 (327)
T 1iqp_A 167 RPLRDEDIAKRLRYIAENEGLEL---TEEGLQAILYIAEGDMRRAINI 211 (327)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCEE---CHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999988764332111 1466788999999999865443
No 161
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.74 E-value=1.4e-09 Score=116.42 Aligned_cols=138 Identities=14% Similarity=0.118 Sum_probs=66.5
Q ss_pred CccccccccccchhcchhHhhcc-----CCcccEEEccCCCcccccCcc-cCCCCCCCEEEecCCCcccc-----Chhh-
Q 037138 480 PHLLSLFPNINRLKTIARRFFDF-----MPSLTVLNLSNNGFLTKLRPG-ISKLVSLQYLNLSKTSIREL-----PKEL- 547 (806)
Q Consensus 480 ~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~Ls~~~~~~~lp~~-i~~l~~L~~L~Ls~n~l~~l-----p~~i- 547 (806)
++|+.|++++|.++......+.. .++|++|+|++|.+...-... ...+.+|++|+|++|.++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 34556666666554433222222 256666666666432221111 22345566666666666522 1112
Q ss_pred hcCCCCcEEecCCCcccc----ccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEec
Q 037138 548 KALVNLKYLNLEHSRYLH----TIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALK 623 (806)
Q Consensus 548 ~~L~~L~~L~L~~~~~l~----~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 623 (806)
...++|++|+|++|.+.. .++.. +..+++|++|++++|.+... +...+...+...++|+.|+++.|
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l~~~---------g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEG-LAGNTSVTHLSLLHTGLGDE---------GLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHH-HHTCSSCCEEECTTSSCHHH---------HHHHHHHHGGGCSCCCEEECCSS
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHH-HhcCCCcCEEeCCCCCCCcH---------HHHHHHHHHhcCCCcCeEECCCC
Confidence 234566666666665311 12222 34566666666666654421 01122344555566666666666
Q ss_pred chhh
Q 037138 624 SFFA 627 (806)
Q Consensus 624 ~~~~ 627 (806)
.+..
T Consensus 222 ~i~~ 225 (372)
T 3un9_A 222 GAGD 225 (372)
T ss_dssp CCCH
T ss_pred CCCH
Confidence 5543
No 162
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=1.7e-08 Score=106.60 Aligned_cols=172 Identities=13% Similarity=0.128 Sum_probs=102.7
Q ss_pred CCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCc----c-------------
Q 037138 479 CPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSI----R------------- 541 (806)
Q Consensus 479 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l----~------------- 541 (806)
|++|+.|.+.. .++.++...|.+|++|+.|++++|.....-+..|..+.++.++.+..+.. .
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 78888888887 67788888888888888888888854444455666666666665444110 0
Q ss_pred ----------ccChh---------------------------h-hcCCCCcEEecCCCccccccccccccCCCCCcEEEe
Q 037138 542 ----------ELPKE---------------------------L-KALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRM 583 (806)
Q Consensus 542 ----------~lp~~---------------------------i-~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l 583 (806)
.+|.. + ..+++|+.|++++|+ +..+|...|.++++|+.|++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEEC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEEC
Confidence 00000 0 126677777777765 56677766777777777777
Q ss_pred ecccCCCCCCCCccccCCccchHHHhcCCCCCC-eeeEEecchhhHHHhhhchhhccccccceeccCCCCCccccccccc
Q 037138 584 VNCDYSGKIPLDSILFGGCESLVEELISLKHLN-VLTIALKSFFALQRFLSSHELQNCTKSLNLRYYDDSKSFNIYSLAD 662 (806)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~-~L~l~~~~~~~~~~~~~~~~l~~~~~~l~L~~~~~~~~~~~~~l~~ 662 (806)
.+| +. .++ ...+..+++|+ .+.+.. +........|.+
T Consensus 258 ~~n-i~-~I~------------~~aF~~~~~L~~~l~l~~----------------------------~l~~I~~~aF~~ 295 (329)
T 3sb4_A 258 PHN-LK-TIG------------QRVFSNCGRLAGTLELPA----------------------------SVTAIEFGAFMG 295 (329)
T ss_dssp CTT-CC-EEC------------TTTTTTCTTCCEEEEECT----------------------------TCCEECTTTTTT
T ss_pred Ccc-cc-eeh------------HHHhhCChhccEEEEEcc----------------------------cceEEchhhhhC
Confidence 665 22 111 03456666666 666542 112222236778
Q ss_pred ccccceEeeccccCccccceeeecccCCcCCCCccccCCCcceEe
Q 037138 663 LKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFAPNLKSIH 707 (806)
Q Consensus 663 l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~L~ 707 (806)
+++|+.|+++.+. ++.+. ...+..+++|+.|+
T Consensus 296 c~~L~~l~l~~n~----i~~I~---------~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 296 CDNLRYVLATGDK----ITTLG---------DELFGNGVPSKLIY 327 (329)
T ss_dssp CTTEEEEEECSSC----CCEEC---------TTTTCTTCCCCEEE
T ss_pred CccCCEEEeCCCc----cCccc---------hhhhcCCcchhhhc
Confidence 8888888887653 11111 12455667777765
No 163
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.61 E-value=1e-07 Score=99.95 Aligned_cols=165 Identities=11% Similarity=0.175 Sum_probs=107.8
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCC-eEEEEEeCCcccHHHHHHHHHHHhC
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFD-VVIWVVVSKDMQLERIQEKIGERIG 213 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~ 213 (806)
..++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++... ...+. ..+.++.+.......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~---------- 84 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGIDV---------- 84 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTSTTCTTT----------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccccChHH----------
Confidence 35899999999999988777666699999999999999999998751 11111 233444443211111
Q ss_pred CCCCCCHHHHHHHHHHH--h-CCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-------------ceec
Q 037138 214 LLENRSLEERASGIFKI--L-SKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL-------------IFKV 274 (806)
Q Consensus 214 ~~~~~~~~~~~~~l~~~--l-~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~-------------~~~l 274 (806)
........... + .+++.++|+||++.. ...+.+...+.. ..+..+|+||.. .+.+
T Consensus 85 ------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~ 158 (319)
T 2chq_A 85 ------VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (319)
T ss_dssp ------SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEEC
T ss_pred ------HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEe
Confidence 11111111111 1 366889999999753 233445444544 567788888765 6889
Q ss_pred ccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHH
Q 037138 275 ECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALI 320 (806)
Q Consensus 275 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 320 (806)
.+++.++...++...+....... -.+....+++.++|.+-.+.
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~i---~~~~l~~l~~~~~G~~r~~~ 201 (319)
T 2chq_A 159 KPVPKEAMKKRLLEICEKEGVKI---TEDGLEALIYISGGDFRKAI 201 (319)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCCB---CHHHHHHHHHTTTTCHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 99999999999988764332111 14567888899999887543
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.59 E-value=3.6e-07 Score=98.60 Aligned_cols=198 Identities=14% Similarity=0.171 Sum_probs=119.0
Q ss_pred ccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccCh-hhhcCCCCcEEecC
Q 037138 481 HLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPK-ELKALVNLKYLNLE 559 (806)
Q Consensus 481 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~L~L~ 559 (806)
+|+.+.+.. .++.+....|.+|++|+.+++++| .+..+|.....+.+|+.+.|..+ ++.++. .|.++++|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 577777765 566677777777777887777777 44455544434677777777643 665553 46677777777777
Q ss_pred CCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhH-HHhhhchhhc
Q 037138 560 HSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFAL-QRFLSSHELQ 638 (806)
Q Consensus 560 ~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~-~~~~~~~~l~ 638 (806)
.+ +..++...|.+ .+|+.+.+..+ +.. ++ ...+..+++|+.+.+..+..... ...+....+.
T Consensus 235 ~~--l~~I~~~aF~~-~~L~~i~lp~~-i~~-I~------------~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~ 297 (401)
T 4fdw_A 235 EN--VSTIGQEAFRE-SGITTVKLPNG-VTN-IA------------SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE 297 (401)
T ss_dssp TT--CCEECTTTTTT-CCCSEEEEETT-CCE-EC------------TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT
T ss_pred CC--ccCcccccccc-CCccEEEeCCC-ccE-EC------------hhHhhCCCCCCEEEeCCccccCCcccEECHHHhh
Confidence 65 46666666666 67777777432 221 11 13566677777777765543200 0001123445
Q ss_pred cccccceeccCCCCCcccccccccccccceEeeccccCccccceeeecccCCcCCCCccccCCCcceEeeecCcc
Q 037138 639 NCTKSLNLRYYDDSKSFNIYSLADLKHLDKLDLIYCRNLEEFKKVMIDFCIKLREVTWLVFAPNLKSIHIANCHF 713 (806)
Q Consensus 639 ~~~~~l~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~L~~L~l~~c~~l~~~~~l~~l~~L~~L~L~~~~~ 713 (806)
+|..+..+...++........+.++++|+.+.|..+ ++.+. ...+..+ +|+.|.+.+|..
T Consensus 298 ~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-----l~~I~---------~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 298 GCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-----VTQIN---------FSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp TCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-----CCEEC---------TTSSSSS-CCCEEEECCSSC
T ss_pred CCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-----ccEEc---------HHhCCCC-CCCEEEEcCCCC
Confidence 555555565554444444457788888888888654 22111 1235556 888888888875
No 165
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.58 E-value=9.3e-09 Score=109.93 Aligned_cols=158 Identities=14% Similarity=0.131 Sum_probs=108.3
Q ss_pred EEEeeecccccccC-----CC--CCCCccccccccccchhcch-hHhhccCCcccEEEccCCCcccccCccc-----CCC
Q 037138 461 RRISLMRNKIEKLS-----DT--PTCPHLLSLFPNINRLKTIA-RRFFDFMPSLTVLNLSNNGFLTKLRPGI-----SKL 527 (806)
Q Consensus 461 ~~ls~~~~~~~~~~-----~~--~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~~~~~~~lp~~i-----~~l 527 (806)
+.+.+.++.+.... .. ..+++|+.|++++|.+.... ..+...+++|+.|+|++|.+...-...+ ...
T Consensus 75 ~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~ 154 (372)
T 3un9_A 75 RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQ 154 (372)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTT
T ss_pred CEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcC
Confidence 45566666554311 11 24578999999999875433 2334456789999999995543322232 346
Q ss_pred CCCCEEEecCCCccc-----cChhhhcCCCCcEEecCCCcccc----ccccccccCCCCCcEEEeecccCCCCCCCCccc
Q 037138 528 VSLQYLNLSKTSIRE-----LPKELKALVNLKYLNLEHSRYLH----TIPRQLICSFSMLHVLRMVNCDYSGKIPLDSIL 598 (806)
Q Consensus 528 ~~L~~L~Ls~n~l~~-----lp~~i~~L~~L~~L~L~~~~~l~----~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 598 (806)
++|++|+|++|.|+. ++..+..+++|++|+|++|.+.. .++.. +...++|++|++++|.+...
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~------- 226 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDT------- 226 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHH-------
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHH-------
Confidence 789999999999873 56667889999999999998432 12333 56778999999999987632
Q ss_pred cCCccchHHHhcCCCCCCeeeEEecchhhH
Q 037138 599 FGGCESLVEELISLKHLNVLTIALKSFFAL 628 (806)
Q Consensus 599 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 628 (806)
+...+...+...++|+.|+++.|.+...
T Consensus 227 --g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 227 --AALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp --HHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred --HHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 1123445667788999999998887544
No 166
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.57 E-value=2.7e-07 Score=99.20 Aligned_cols=169 Identities=15% Similarity=0.155 Sum_probs=105.6
Q ss_pred CccccchHHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCC-------------------eEEEEE
Q 037138 135 PTIVGLNSTLEKVWRCLGEER-VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFD-------------------VVIWVV 194 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~-------------------~~~wv~ 194 (806)
..++|++..++.+...+..+. ...+.|+|++|+||||+|+.+++... ....+. ..+.+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGITATPCGVCDNCREIEQGRFVDLIEID 94 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS-CTTCSCSSCCSSSHHHHHHHTSCCSSCEEEE
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCCCCCCCCCcccHHHHHHhccCCCceEEec
Confidence 358999999999999987654 45788999999999999999998762 111110 011111
Q ss_pred eCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-hCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC
Q 037138 195 VSKDMQLERIQEKIGERIGLLENRSLEERASGIFKI-LSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL 270 (806)
Q Consensus 195 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~-l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~ 270 (806)
.+... ......+..+.+... ..+++.++|+||++.. ...+.+...+.. ..+..+|++|..
T Consensus 95 ~~~~~----------------~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 158 (373)
T 1jr3_A 95 AASRT----------------KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (373)
T ss_dssp TTCSC----------------CSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESC
T ss_pred ccccC----------------CHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 11000 011222222111110 1356789999999653 223334333333 456677777764
Q ss_pred -------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhh
Q 037138 271 -------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITTG 323 (806)
Q Consensus 271 -------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g 323 (806)
.+.+.+++.++...++...+....... -.+....|++.++|.|..+..+.
T Consensus 159 ~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~---~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 159 PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred hHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHCCCCHHHHHHHH
Confidence 688999999999999987763222111 14567889999999998775544
No 167
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.51 E-value=9.8e-08 Score=91.79 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=41.5
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++||+++++++.+.+.....+.+.|+|++|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999987777788999999999999999999875
No 168
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.42 E-value=2.3e-07 Score=92.89 Aligned_cols=158 Identities=11% Similarity=0.090 Sum_probs=95.4
Q ss_pred Cccccc---hHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHH
Q 037138 135 PTIVGL---NSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGER 211 (806)
Q Consensus 135 ~~~~gr---~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 211 (806)
..++|+ +..++.+..+........+.|+|++|+||||+|+.+++... .....+.|++++.-... +..
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~~~~~~~~~~~~~~------~~~- 97 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN---ELERRSFYIPLGIHASI------STA- 97 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGGGGGS------CGG-
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHH------HHH-
Confidence 346653 35566666666555678899999999999999999998862 22335677765432110 000
Q ss_pred hCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCccC----cccccccCCC--CCCc-EEEEecCC--------------
Q 037138 212 IGLLENRSLEERASGIFKILSKKKFLLLLDDVWERID----LTKVGIPFPS--KNTS-KVVFTTRL-------------- 270 (806)
Q Consensus 212 l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~----~~~~~~~~~~--~~~s-~iivTtr~-------------- 270 (806)
....+ .++.+||+||++.... .+.+...+.. ..+. ++|+||+.
T Consensus 98 ---------------~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~ 161 (242)
T 3bos_A 98 ---------------LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVS 161 (242)
T ss_dssp ---------------GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHH
T ss_pred ---------------HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhh
Confidence 00011 3467899999975322 2222222221 1222 47777763
Q ss_pred ------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHH
Q 037138 271 ------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALIT 321 (806)
Q Consensus 271 ------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 321 (806)
.+.+.+++.++..+++...+...... --.+....+++.++|.+-.+..
T Consensus 162 r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~l~~ 215 (242)
T 3bos_A 162 RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ---LPEDVGRFLLNRMARDLRTLFD 215 (242)
T ss_dssp HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC---CCHHHHHHHHHHTTTCHHHHHH
T ss_pred HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHccCCHHHHHH
Confidence 46788899999999888776422211 1256677888888887755543
No 169
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.40 E-value=2.5e-06 Score=92.80 Aligned_cols=163 Identities=16% Similarity=0.167 Sum_probs=98.9
Q ss_pred CccccchHHH---HHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHH
Q 037138 135 PTIVGLNSTL---EKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGER 211 (806)
Q Consensus 135 ~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 211 (806)
..++|.+..+ ..+...+..+....+.|+|++|+||||+|+.+++.. ...| ..++.. ......+. .++..
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f---~~l~a~-~~~~~~ir-~~~~~ 97 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADV---ERISAV-TSGVKEIR-EAIER 97 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEE---EEEETT-TCCHHHHH-HHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCe---EEEEec-cCCHHHHH-HHHHH
Confidence 4589999888 677788877778889999999999999999999986 2222 222221 12222221 11111
Q ss_pred hCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCcccccccCCCCCCcEEEE-ecCC--------------ceec
Q 037138 212 IGLLENRSLEERASGIFKILSKKKFLLLLDDVWER--IDLTKVGIPFPSKNTSKVVF-TTRL--------------IFKV 274 (806)
Q Consensus 212 l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~~~~s~iiv-Ttr~--------------~~~l 274 (806)
. ......+++.+|++|++... ...+.+...+.. ....+|. ||.+ .+.+
T Consensus 98 a--------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR~~v~~l 162 (447)
T 3pvs_A 98 A--------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSRARVYLL 162 (447)
T ss_dssp H--------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTTEEEEEC
T ss_pred H--------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCceeEEee
Confidence 0 01112577899999999753 223333222222 2233333 5444 7789
Q ss_pred ccCChHHHHHHHHhhhCCCc--cC-C-CCChHHHHHHHHHHhCCchHHHH
Q 037138 275 ECLRDKEAWELFLDKVGEET--LD-S-HLDIPKLAHTLAKECGGLPLALI 320 (806)
Q Consensus 275 ~~L~~~e~~~lf~~~~~~~~--~~-~-~~~~~~~~~~i~~~c~GlPlai~ 320 (806)
++++.++...++.+.+.... .. . ..--.+....+++.++|.+-.+.
T Consensus 163 ~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 163 KSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp CCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 99999999999988764311 00 0 11125677888889999876543
No 170
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.38 E-value=5.4e-07 Score=95.99 Aligned_cols=179 Identities=11% Similarity=0.138 Sum_probs=106.9
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCC-CCCCCeEEEEEeCCcccHHHHHHHHHHHhC
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDT-PNDFDVVIWVVVSKDMQLERIQEKIGERIG 213 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 213 (806)
..++|++..++.+..++..+..+.+.|+|++|+||||+|+.+++..... ...+ .+..++.+.......+... .....
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~ 114 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIVREK-VKNFA 114 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHHTTH-HHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHHHHH-HHHHh
Confidence 4589999999999999987765558999999999999999998874100 0111 2334444443333322211 11111
Q ss_pred CC-CCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc--CcccccccCCC-CCCcEEEEecCC-------------ceeccc
Q 037138 214 LL-ENRSLEERASGIFKILSKKKFLLLLDDVWERI--DLTKVGIPFPS-KNTSKVVFTTRL-------------IFKVEC 276 (806)
Q Consensus 214 ~~-~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~--~~~~~~~~~~~-~~~s~iivTtr~-------------~~~l~~ 276 (806)
.. ....... .....-.+++-++++|++.... ....+...+.. ....++|++|.. .+.+.+
T Consensus 115 ~~~~~~~~~~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~ 191 (353)
T 1sxj_D 115 RLTVSKPSKH---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKA 191 (353)
T ss_dssp HSCCCCCCTT---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCC
T ss_pred hhcccccchh---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCC
Confidence 00 0000000 0001112456799999986532 22333322322 345677777754 678999
Q ss_pred CChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHH
Q 037138 277 LRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALIT 321 (806)
Q Consensus 277 L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 321 (806)
++.++....+...+....... -.+....|++.++|.|-.+..
T Consensus 192 ~~~~~~~~~l~~~~~~~~~~i---~~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 192 LDASNAIDRLRFISEQENVKC---DDGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp CCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHTSSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 999999999988764332111 156788999999999876443
No 171
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.33 E-value=9.7e-07 Score=98.66 Aligned_cols=176 Identities=13% Similarity=0.098 Sum_probs=104.1
Q ss_pred CccccchHHHHHHHHHhcC-----------------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC
Q 037138 135 PTIVGLNSTLEKVWRCLGE-----------------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK 197 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 197 (806)
..++|++..++++.+++.. +..+.+.|+|++|+||||+|+.+++.. . + .++.++.+.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-~----~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-G----Y-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-T----C-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-C----C-CEEEEeCCC
Confidence 4689999999999999864 134789999999999999999999986 1 2 345555555
Q ss_pred cccHHHHHHHHHHHhCCCCCCCHHHHHHHHH--HHhCCCcEEEEEecCCCccC--c---ccccccCCCCCCcEEEEecCC
Q 037138 198 DMQLERIQEKIGERIGLLENRSLEERASGIF--KILSKKKFLLLLDDVWERID--L---TKVGIPFPSKNTSKVVFTTRL 270 (806)
Q Consensus 198 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~--~~l~~k~~LlvlDdv~~~~~--~---~~~~~~~~~~~~s~iivTtr~ 270 (806)
......+ ...+....... +......... ....+++.+|++|+++.... . ..+...+. ..+..||+++..
T Consensus 113 ~~~~~~~-~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~-~~~~~iIli~~~ 188 (516)
T 1sxj_A 113 VRSKTLL-NAGVKNALDNM--SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR-KTSTPLILICNE 188 (516)
T ss_dssp CCCHHHH-HHTGGGGTTBC--CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH-HCSSCEEEEESC
T ss_pred cchHHHH-HHHHHHHhccc--cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH-hcCCCEEEEEcC
Confidence 4443322 22222111100 0000000000 01236788999999975321 1 22221111 123345554433
Q ss_pred --------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCC-chHHHHHhh
Q 037138 271 --------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGG-LPLALITTG 323 (806)
Q Consensus 271 --------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPlai~~~g 323 (806)
.+.+.+++.++..+++...+........ .+....|++.++| ++-|+..+.
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 5789999999999998877643322222 2457788999998 556666654
No 172
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.29 E-value=9.4e-07 Score=96.42 Aligned_cols=165 Identities=18% Similarity=0.175 Sum_probs=96.9
Q ss_pred ccc-cchH--HHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCC--CeEEEEEeCCcccHHHHHHHHH
Q 037138 136 TIV-GLNS--TLEKVWRCLGEER-VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDF--DVVIWVVVSKDMQLERIQEKIG 209 (806)
Q Consensus 136 ~~~-gr~~--~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~ 209 (806)
.|+ |... ....+........ ...+.|+|++|+||||||+.+++... ..+ ..+++++. ..+..++.
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~---~~~~~~~v~~v~~------~~~~~~~~ 176 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVV---QNEPDLRVMYITS------EKFLNDLV 176 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHH---HHCCSSCEEEEEH------HHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HhCCCCeEEEeeH------HHHHHHHH
Confidence 344 6443 2333444443333 67899999999999999999998761 222 13455543 23334444
Q ss_pred HHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCccC----cccccccCCC--CCCcEEEEecCC-------------
Q 037138 210 ERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERID----LTKVGIPFPS--KNTSKVVFTTRL------------- 270 (806)
Q Consensus 210 ~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~----~~~~~~~~~~--~~~s~iivTtr~------------- 270 (806)
..+... . ...+...+..+.-+|++||++.... .+.+...+.. ..|..||+||..
T Consensus 177 ~~~~~~---~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~ 249 (440)
T 2z4s_A 177 DSMKEG---K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLV 249 (440)
T ss_dssp HHHHTT---C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHH
T ss_pred HHHHcc---c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHH
Confidence 433211 1 1223344444677999999975332 2233333322 457788888875
Q ss_pred -------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHH
Q 037138 271 -------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLAL 319 (806)
Q Consensus 271 -------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 319 (806)
.+.+++++.++-.+++.+.+.......+ .+....|++.++|.+-.+
T Consensus 250 sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l 302 (440)
T 2z4s_A 250 SRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRL 302 (440)
T ss_dssp HHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHH
T ss_pred hhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHH
Confidence 4577888888888888777642221112 234667788888877544
No 173
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=3.9e-07 Score=91.27 Aligned_cols=105 Identities=28% Similarity=0.343 Sum_probs=67.3
Q ss_pred CCCCcccc--ccccccchhcch---hHhhccCCcccEEEccCCCccc--ccCcccCCCCCCCEEEecCCCccccChhhhc
Q 037138 477 PTCPHLLS--LFPNINRLKTIA---RRFFDFMPSLTVLNLSNNGFLT--KLRPGISKLVSLQYLNLSKTSIRELPKELKA 549 (806)
Q Consensus 477 ~~~~~L~~--L~l~~n~l~~~~---~~~~~~l~~L~~L~Ls~~~~~~--~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~ 549 (806)
...+.|.. ++++.|....++ ......+++|+.|+|++|.+.+ .+|..+..+++|++|+|++|.|+.+ ..+..
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~ 216 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDK 216 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhh
Confidence 33455555 556666333222 2233567888888888885544 4556667788888888888888766 33444
Q ss_pred CC--CCcEEecCCCcccccccc------ccccCCCCCcEEE
Q 037138 550 LV--NLKYLNLEHSRYLHTIPR------QLICSFSMLHVLR 582 (806)
Q Consensus 550 L~--~L~~L~L~~~~~l~~lp~------~~~~~l~~L~~L~ 582 (806)
+. +|++|+|++|.+.+.+|. .++..+++|+.|+
T Consensus 217 l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 217 IKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 54 788888888876555542 2356677777775
No 174
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.28 E-value=1.6e-06 Score=89.18 Aligned_cols=157 Identities=20% Similarity=0.195 Sum_probs=94.3
Q ss_pred CccccchHHHHHHHHHhcC-------------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccH
Q 037138 135 PTIVGLNSTLEKVWRCLGE-------------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQL 201 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 201 (806)
..++|.+..++++.+.+.. .....+.|+|++|+|||++|+.+++.. .. ..+.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~---~~~~v~~~~~~~- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NA---TFIRVVGSELVK- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TC---EEEEEEGGGGCC-
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CC---CEEEEehHHHHH-
Confidence 4689999999999887632 345679999999999999999999986 22 223333221110
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH-HHHHhCCCcEEEEEecCCCcc----------C------cccccccC---CCCCC
Q 037138 202 ERIQEKIGERIGLLENRSLEERASG-IFKILSKKKFLLLLDDVWERI----------D------LTKVGIPF---PSKNT 261 (806)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~-l~~~l~~k~~LlvlDdv~~~~----------~------~~~~~~~~---~~~~~ 261 (806)
............ +......++.+|+|||++... . +..+...+ ....+
T Consensus 90 -------------~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 156 (285)
T 3h4m_A 90 -------------KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGD 156 (285)
T ss_dssp -------------CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSS
T ss_pred -------------hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 001111111122 222234567899999996420 0 11111111 11345
Q ss_pred cEEEEecCC----------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCc
Q 037138 262 SKVVFTTRL----------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGL 315 (806)
Q Consensus 262 s~iivTtr~----------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 315 (806)
..||.||.. .+.++..+.++..+++...+.........+ ...+++.+.|.
T Consensus 157 ~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~ 222 (285)
T 3h4m_A 157 VKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGC 222 (285)
T ss_dssp EEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTC
T ss_pred EEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCC
Confidence 677888864 578899999999999988875433222222 35566677663
No 175
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.25 E-value=7.9e-06 Score=83.23 Aligned_cols=178 Identities=15% Similarity=0.057 Sum_probs=99.7
Q ss_pred ccccchHHHHHHHH-------Hhc---CCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHH
Q 037138 136 TIVGLNSTLEKVWR-------CLG---EERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQ 205 (806)
Q Consensus 136 ~~~gr~~~~~~l~~-------~l~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 205 (806)
.++|....++++.. .+. ......+.|+|++|+|||++|+.+++.. ... .+.+..+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~---~~~i~~~~~~------ 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFP---FIKICSPDKM------ 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCS---EEEEECGGGC------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEeCHHHh------
Confidence 46787777666655 232 3456789999999999999999999976 222 2223322110
Q ss_pred HHHHHHhCCCCCCCHH----HHHHHHHHHhCCCcEEEEEecCCCcc------------CcccccccCCC----CCCcEEE
Q 037138 206 EKIGERIGLLENRSLE----ERASGIFKILSKKKFLLLLDDVWERI------------DLTKVGIPFPS----KNTSKVV 265 (806)
Q Consensus 206 ~~i~~~l~~~~~~~~~----~~~~~l~~~l~~k~~LlvlDdv~~~~------------~~~~~~~~~~~----~~~s~ii 265 (806)
. ..... .....+......+..+|+|||++... .+..+...+.. .....||
T Consensus 102 -------~---g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 102 -------I---GFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp -------T---TCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred -------c---CCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 0 11111 11122223334678899999985420 01112222221 2334566
Q ss_pred EecCC---------------ceecccCCh-HHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCC------chHHHHHhh
Q 037138 266 FTTRL---------------IFKVECLRD-KEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGG------LPLALITTG 323 (806)
Q Consensus 266 vTtr~---------------~~~l~~L~~-~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G------lPlai~~~g 323 (806)
.||.. .+.+++++. ++...++.+... . -.+....|++.+.| ++-++.++-
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~-----~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l~ 243 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN-----F---KDKERTTIAQQVKGKKVWIGIKKLLMLIE 243 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC-----S---CHHHHHHHHHHHTTSEEEECHHHHHHHHH
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC-----C---CHHHHHHHHHHhcCCCccccHHHHHHHHH
Confidence 67765 567888887 666666554311 0 14557788888877 455555554
Q ss_pred -hcCCCCHHHHHHHHHHHhhc
Q 037138 324 -LGCKKSQEEWSYAIEILRRS 343 (806)
Q Consensus 324 -~~~~~~~~~w~~~l~~l~~~ 343 (806)
.........+..+++.+...
T Consensus 244 ~a~~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 244 MSLQMDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHTTSCGGGHHHHHHHHHHHT
T ss_pred HHhhhchHHHHHHHHHHHHHc
Confidence 22333456666666666543
No 176
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.22 E-value=2.7e-06 Score=91.94 Aligned_cols=126 Identities=11% Similarity=0.118 Sum_probs=76.6
Q ss_pred CCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccC-hhhhcCCCCc
Q 037138 476 TPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELP-KELKALVNLK 554 (806)
Q Consensus 476 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp-~~i~~L~~L~ 554 (806)
+.+|.+|+.+.+..+ ++.+....|.++++|+.+++..+ ....-...+.++.+|+.+.+..+ +..+. ..+.++..+.
T Consensus 67 F~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred hhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence 367788888887643 77777777888888888888765 33333456777777777766544 33332 2344554444
Q ss_pred EEecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEE
Q 037138 555 YLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIA 621 (806)
Q Consensus 555 ~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 621 (806)
...... ...+....|.++++|+.+.+..+... ++ ...+..+.+|+.+.+.
T Consensus 144 ~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~~~~--I~------------~~~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 144 ITIPEG---VTVIGDEAFATCESLEYVSLPDSMET--LH------------NGLFSGCGKLKSIKLP 193 (394)
T ss_dssp EECCTT---CCEECTTTTTTCTTCCEEECCTTCCE--EC------------TTTTTTCTTCCBCCCC
T ss_pred cccCcc---ccccchhhhcccCCCcEEecCCccce--ec------------cccccCCCCceEEEcC
Confidence 333332 23445556888899999888643211 11 0245666777776664
No 177
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=1.8e-06 Score=91.83 Aligned_cols=182 Identities=10% Similarity=0.117 Sum_probs=100.8
Q ss_pred CccccchHHHHHHHHHh-cCCCceEEEEEccCCCCHHHHHHHHHhhcCCCC-C--CCCe--------------------E
Q 037138 135 PTIVGLNSTLEKVWRCL-GEERVGIIGLYGMGGVGKTTLLAQINNKFLDTP-N--DFDV--------------------V 190 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~--~F~~--------------------~ 190 (806)
..++|.+..++.+.+++ ..+..+.+.|+|++|+||||+|+.++....... + .++. .
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 45899999999999888 666555599999999999999999988531111 1 1110 1
Q ss_pred EEEEeCCcc-cHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc--CcccccccCCC-CCCcEEEE
Q 037138 191 IWVVVSKDM-QLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERI--DLTKVGIPFPS-KNTSKVVF 266 (806)
Q Consensus 191 ~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~--~~~~~~~~~~~-~~~s~iiv 266 (806)
+.+..+... ......++++..+..... ..... .+ ..+.+++-++|+|++.... ....+...+.. ..++.+|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il 169 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQ--VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIM 169 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC----------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEE
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhcc--ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEE
Confidence 111111100 000012222222211100 00000 00 0023467799999997632 12223332322 34677887
Q ss_pred ecCC-------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHh
Q 037138 267 TTRL-------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITT 322 (806)
Q Consensus 267 Ttr~-------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~ 322 (806)
+|.. .+.+.+++.++....+...+.......+ -.+....|++.++|.+-.+..+
T Consensus 170 ~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 170 VCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE--TKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp EESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC--CSHHHHHHHHHHTTCHHHHHHH
T ss_pred EeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHcCCCHHHHHHH
Confidence 7765 6889999999999999887643221111 0246788899999988655433
No 178
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.22 E-value=1.3e-06 Score=92.56 Aligned_cols=141 Identities=19% Similarity=0.220 Sum_probs=83.6
Q ss_pred HhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCcc-ccChhhh--cCCCCcEEecCCC--cccc-----cc
Q 037138 498 RFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIR-ELPKELK--ALVNLKYLNLEHS--RYLH-----TI 567 (806)
Q Consensus 498 ~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~-~lp~~i~--~L~~L~~L~L~~~--~~l~-----~l 567 (806)
..+..+++|+.|+|++|... .+|. + .+++|++|+|..|.+. .....+. .+++|++|+|+.+ ...+ .+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 45677889999999887322 3443 3 3788999999888765 2222333 6889999988632 1111 11
Q ss_pred ccccc--cCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhHHHhhhchhhccccccce
Q 037138 568 PRQLI--CSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFALQRFLSSHELQNCTKSLN 645 (806)
Q Consensus 568 p~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~l~~~~~~l~ 645 (806)
... + ..+++|++|++.+|.+....+ ........+++|+.|+++.|.+...... .+
T Consensus 243 ~~~-l~~~~~p~Lr~L~L~~~~i~~~~~----------~~la~a~~~~~L~~LdLs~n~L~d~G~~----~L-------- 299 (362)
T 2ra8_A 243 RPL-FSKDRFPNLKWLGIVDAEEQNVVV----------EMFLESDILPQLETMDISAGVLTDEGAR----LL-------- 299 (362)
T ss_dssp GGG-SCTTTCTTCCEEEEESCTTHHHHH----------HHHHHCSSGGGCSEEECCSSCCBHHHHH----HH--------
T ss_pred HHH-HhcCCCCCcCEEeCCCCCCchHHH----------HHHHhCccCCCCCEEECCCCCCChHHHH----HH--------
Confidence 111 2 347888888888776642100 1112223567888888877765442210 00
Q ss_pred eccCCCCCcccccccccccccceEeecccc
Q 037138 646 LRYYDDSKSFNIYSLADLKHLDKLDLIYCR 675 (806)
Q Consensus 646 L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 675 (806)
...+..+++|+.|+|++|.
T Consensus 300 -----------~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 300 -----------LDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp -----------HTTHHHHTTCSEEECCSBB
T ss_pred -----------HhhcccCCcceEEECCCCc
Confidence 0133457888899988875
No 179
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.20 E-value=6e-06 Score=89.25 Aligned_cols=117 Identities=14% Similarity=0.159 Sum_probs=62.6
Q ss_pred EEEeeecccccccCC--CCCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCC
Q 037138 461 RRISLMRNKIEKLSD--TPTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKT 538 (806)
Q Consensus 461 ~~ls~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n 538 (806)
+.+.+. +.+..+.. +.+|++|+.+.+..+ ++.+....|.++..|+.+.+..+ ....-...|.++..+......
T Consensus 74 ~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~-- 148 (394)
T 4fs7_A 74 TEIKIP-STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPE-- 148 (394)
T ss_dssp EEEECC-TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCT--
T ss_pred eEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCc--
Confidence 455554 33555543 478999999999765 77788888999999988877655 332222333333322221111
Q ss_pred Ccccc-ChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEee
Q 037138 539 SIREL-PKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMV 584 (806)
Q Consensus 539 ~l~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~ 584 (806)
.+..+ ...+.++++|+.+.+..+ ...++...|..+++|+.+.+.
T Consensus 149 ~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 149 GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLP 193 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCC
T ss_pred cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcC
Confidence 11111 123445555555555443 233444445555555555443
No 180
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.19 E-value=3e-06 Score=88.23 Aligned_cols=141 Identities=13% Similarity=0.139 Sum_probs=79.6
Q ss_pred ccccchHHHHHHHHHhc---------------CCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCccc
Q 037138 136 TIVGLNSTLEKVWRCLG---------------EERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQ 200 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~---------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~ 200 (806)
.++|.+..++.+.+.+. ......+.|+|++|+|||++|+.+++... ........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLH-RLGYVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHH-HTTSSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHH-hcCCcCCCcEEEEcHH--
Confidence 47899988888876653 23455789999999999999998887652 1122111123333211
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc-----------cCcccccccCCC-CCCcEEEEec
Q 037138 201 LERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWER-----------IDLTKVGIPFPS-KNTSKVVFTT 268 (806)
Q Consensus 201 ~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~-----------~~~~~~~~~~~~-~~~s~iivTt 268 (806)
.+..............+.... +.-+|++|+++.. .....+...+.. ..+..||.||
T Consensus 109 ----------~l~~~~~g~~~~~~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~ 176 (309)
T 3syl_A 109 ----------DLVGQYIGHTAPKTKEVLKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAG 176 (309)
T ss_dssp ----------GTCCSSTTCHHHHHHHHHHHH--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEE
T ss_pred ----------HhhhhcccccHHHHHHHHHhc--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 011111111111112222211 3459999999732 112223222222 3456777777
Q ss_pred CC-------------------ceecccCChHHHHHHHHhhhC
Q 037138 269 RL-------------------IFKVECLRDKEAWELFLDKVG 291 (806)
Q Consensus 269 r~-------------------~~~l~~L~~~e~~~lf~~~~~ 291 (806)
.. .+.+++++.++-..++...+.
T Consensus 177 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 177 YADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp CHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 42 678888888888888877653
No 181
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.17 E-value=7.6e-06 Score=87.55 Aligned_cols=178 Identities=14% Similarity=0.098 Sum_probs=96.9
Q ss_pred CccccchHHHHHH---HHHhcCCCc--eEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEe----CCcccHHHHH
Q 037138 135 PTIVGLNSTLEKV---WRCLGEERV--GIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVV----SKDMQLERIQ 205 (806)
Q Consensus 135 ~~~~gr~~~~~~l---~~~l~~~~~--~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~----s~~~~~~~~~ 205 (806)
..++|++..++.+ .+.+..... +.+.|+|++|+|||++|+.+++.. .....| +.+.. +........+
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL-GPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH-CSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh-cccCCc---ccccchhhhhcccchhHHH
Confidence 4689999887764 444444433 589999999999999999999987 211121 22221 2223333333
Q ss_pred HHHHHHhCC-------------------------------CC-CCCHHHHHHHHHHHh-----CCC----cEEEEEecCC
Q 037138 206 EKIGERIGL-------------------------------LE-NRSLEERASGIFKIL-----SKK----KFLLLLDDVW 244 (806)
Q Consensus 206 ~~i~~~l~~-------------------------------~~-~~~~~~~~~~l~~~l-----~~k----~~LlvlDdv~ 244 (806)
......... .. ..........+.... .++ +.+|++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 333332110 00 000111111111111 233 3599999997
Q ss_pred Cc--cCcccccccCCCCCCcEEEEecC-----------C--------------ceecccCChHHHHHHHHhhhCCCccCC
Q 037138 245 ER--IDLTKVGIPFPSKNTSKVVFTTR-----------L--------------IFKVECLRDKEAWELFLDKVGEETLDS 297 (806)
Q Consensus 245 ~~--~~~~~~~~~~~~~~~s~iivTtr-----------~--------------~~~l~~L~~~e~~~lf~~~~~~~~~~~ 297 (806)
.. .....+...+.......++++|. + .+.+.+++.++...++...+......
T Consensus 200 ~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~~- 278 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVE- 278 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTCC-
T ss_pred ccChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCCC-
Confidence 53 22222333333322223333332 1 67899999999999998876432211
Q ss_pred CCChHHHHHHHHHHhC-CchHHH
Q 037138 298 HLDIPKLAHTLAKECG-GLPLAL 319 (806)
Q Consensus 298 ~~~~~~~~~~i~~~c~-GlPlai 319 (806)
--.+....|++.+. |.|-.+
T Consensus 279 --~~~~~l~~l~~~~~~G~~r~~ 299 (368)
T 3uk6_A 279 --MSEDAYTVLTRIGLETSLRYA 299 (368)
T ss_dssp --BCHHHHHHHHHHHHHSCHHHH
T ss_pred --CCHHHHHHHHHHhcCCCHHHH
Confidence 11566788888887 776544
No 182
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.16 E-value=7.6e-06 Score=86.38 Aligned_cols=164 Identities=15% Similarity=0.220 Sum_probs=100.6
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCC-eEEEEEeCCcccHHHHHHHHHHHhC
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFD-VVIWVVVSKDMQLERIQEKIGERIG 213 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~ 213 (806)
..++|.+..++.+...+..++.+.+.++|++|+||||+|+.+++... ...+. .+..++.+.......+.. ++..
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~~ir~-~i~~-- 99 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGIDVVRN-QIKD-- 99 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTTSCCSHHHHHT-HHHH--
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCcccccHHHHHH-HHHH--
Confidence 34689999999998888877766699999999999999999998751 11111 223333333222222211 1111
Q ss_pred CCCCCCHHHHHHHHHHH---hCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-------------ceec
Q 037138 214 LLENRSLEERASGIFKI---LSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL-------------IFKV 274 (806)
Q Consensus 214 ~~~~~~~~~~~~~l~~~---l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~-------------~~~l 274 (806)
+.+. +.+.+-++|+|++... ...+.+...+.. ...+.+|++|.. .+.+
T Consensus 100 -------------~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~ 166 (340)
T 1sxj_C 100 -------------FASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRF 166 (340)
T ss_dssp -------------HHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred -------------HHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEec
Confidence 1110 1244778999998643 222333322222 345667776654 4688
Q ss_pred ccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHH
Q 037138 275 ECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLAL 319 (806)
Q Consensus 275 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 319 (806)
.+++.++....+...+......- -.+..+.|++.++|.+--+
T Consensus 167 ~~l~~~~~~~~l~~~~~~~~~~i---~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 167 QPLPQEAIERRIANVLVHEKLKL---SPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCCB---CHHHHHHHHHHHTTCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 99999999888877663222111 1456788999999987643
No 183
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.12 E-value=1e-05 Score=85.38 Aligned_cols=156 Identities=16% Similarity=0.110 Sum_probs=96.2
Q ss_pred CccccchHHHHHHHHHhcC-----CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLGE-----ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIG 209 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 209 (806)
..++|++..++++..++.. .....|.|+|++|+|||++|+.+++.. ... .+.++.+.......+
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~---~~~~~~~~~~~~~~~----- 97 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SAN---IKTTAAPMIEKSGDL----- 97 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCC---EEEEEGGGCCSHHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCC---eEEecchhccchhHH-----
Confidence 4689999999999888753 345678999999999999999998876 222 233333221111111
Q ss_pred HHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc--CcccccccC------------------CC-CCCcEEEEec
Q 037138 210 ERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERI--DLTKVGIPF------------------PS-KNTSKVVFTT 268 (806)
Q Consensus 210 ~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~--~~~~~~~~~------------------~~-~~~s~iivTt 268 (806)
...+.. ..+..+|+||++.... ....+...+ .. .++..+|.||
T Consensus 98 --------------~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~at 161 (338)
T 3pfi_A 98 --------------AAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGAT 161 (338)
T ss_dssp --------------HHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEE
T ss_pred --------------HHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeC
Confidence 111111 2456789999987531 111111100 00 1134566665
Q ss_pred CC--------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHH
Q 037138 269 RL--------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALI 320 (806)
Q Consensus 269 r~--------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~ 320 (806)
.. .+.+.+++.++...++...+...... --.+....|++.+.|.|-.+.
T Consensus 162 n~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~ 224 (338)
T 3pfi_A 162 TRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT---CEEKAALEIAKRSRSTPRIAL 224 (338)
T ss_dssp SCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE---ECHHHHHHHHHTTTTCHHHHH
T ss_pred CCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHCcCHHHHH
Confidence 43 68999999999999998876432211 115667888889999985443
No 184
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.12 E-value=8.1e-05 Score=77.53 Aligned_cols=168 Identities=13% Similarity=0.074 Sum_probs=96.9
Q ss_pred CccccchHHHHHHHHHhc------------CCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH
Q 037138 135 PTIVGLNSTLEKVWRCLG------------EERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE 202 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 202 (806)
.+++|.+..++.+.+.+. ....+.|.++|++|+|||+||+.+++.. . .. ..+.++.+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-~-~~---~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS---TFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT-T-SC---EEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc-C-CC---cEEEEEhHHHHh--
Confidence 468999999888877662 1234678999999999999999999975 1 11 233344332110
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCccC-------------ccccccc---CCC-CCCcEEE
Q 037138 203 RIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERID-------------LTKVGIP---FPS-KNTSKVV 265 (806)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~-------------~~~~~~~---~~~-~~~s~ii 265 (806)
.................-..++.+|+||+++.... ...+... +.. ..+..||
T Consensus 85 -----------~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI 153 (322)
T 1xwi_A 85 -----------KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVL 153 (322)
T ss_dssp -----------SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEE
T ss_pred -----------hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEE
Confidence 00011222111112222246788999999975310 0111111 111 2345566
Q ss_pred EecCC--------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch-HHHHHhh
Q 037138 266 FTTRL--------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP-LALITTG 323 (806)
Q Consensus 266 vTtr~--------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-lai~~~g 323 (806)
.||.. .+.+...+.++-.+++...+....... -......|++.+.|.. -.|..+.
T Consensus 154 ~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 154 GATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66654 567888888888888888764332111 1345678888888874 3354444
No 185
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.12 E-value=2.6e-05 Score=82.70 Aligned_cols=166 Identities=12% Similarity=0.073 Sum_probs=97.1
Q ss_pred CccccchHHHHHHHHHhc------------CCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH
Q 037138 135 PTIVGLNSTLEKVWRCLG------------EERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE 202 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 202 (806)
..++|.+..++++.+.+. ....+.|.|+|++|+|||++|+.+++.. .. ..+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~-- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTS-- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCC--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhc--
Confidence 468999999999988763 1346688999999999999999999876 21 234455432111
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHH-HhCCCcEEEEEecCCCcc-------------CcccccccCC----C-CCCcE
Q 037138 203 RIQEKIGERIGLLENRSLEERASGIFK-ILSKKKFLLLLDDVWERI-------------DLTKVGIPFP----S-KNTSK 263 (806)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlvlDdv~~~~-------------~~~~~~~~~~----~-~~~s~ 263 (806)
............+.. .-..++.+|+||+++... ....+...+. . ..+..
T Consensus 156 ------------~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 156 ------------KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp ------------SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred ------------cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 000111111122222 223567899999995320 0111111111 1 23445
Q ss_pred EEEecCC--------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCc-hHHHHHhh
Q 037138 264 VVFTTRL--------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGL-PLALITTG 323 (806)
Q Consensus 264 iivTtr~--------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~~g 323 (806)
||.||.. .+.+...+.++...++...+....... -.+....|++.+.|. +-.+..+.
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL---SEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6666654 567888888888888877664322111 145677888888884 44555544
No 186
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.11 E-value=3.1e-06 Score=80.62 Aligned_cols=46 Identities=22% Similarity=0.352 Sum_probs=41.4
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++||+.+++.+.+.+.......+.|+|++|+||||+|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999987767788999999999999999999875
No 187
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.10 E-value=3.4e-05 Score=80.54 Aligned_cols=165 Identities=17% Similarity=0.128 Sum_probs=96.9
Q ss_pred CccccchHHHHHHHHHhc----------C--CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH
Q 037138 135 PTIVGLNSTLEKVWRCLG----------E--ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE 202 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~----------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 202 (806)
.+++|.+..++++.+.+. . ...+-|.++|++|+|||+||+.+++.. ... .+.++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCC---EEEEchH------
Confidence 468999999999988772 1 134678999999999999999999986 222 2333321
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHH-HhCCCcEEEEEecCCCccC-------------ccccccc---CCC-CCCcEE
Q 037138 203 RIQEKIGERIGLLENRSLEERASGIFK-ILSKKKFLLLLDDVWERID-------------LTKVGIP---FPS-KNTSKV 264 (806)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlvlDdv~~~~~-------------~~~~~~~---~~~-~~~s~i 264 (806)
.+... ...........+.. .-..++.+|+||+++.... ...+... +.. ..+..|
T Consensus 86 ~l~~~--------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 157 (322)
T 3eie_A 86 DLVSK--------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 157 (322)
T ss_dssp HHHTT--------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEE
T ss_pred HHhhc--------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEE
Confidence 11110 01111222222222 2245678999999974311 1111111 112 345566
Q ss_pred EEecCC--------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCc-hHHHHHh
Q 037138 265 VFTTRL--------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGL-PLALITT 322 (806)
Q Consensus 265 ivTtr~--------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~~ 322 (806)
|.||.. .+.+...+.++-.+++...+....... -......|++.+.|. +-.|..+
T Consensus 158 i~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 158 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL---TKEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp EEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC---CHHHHHHHHHTTTTCCHHHHHHH
T ss_pred EEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 667765 567788888888889888775432111 134567788888774 4344433
No 188
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.10 E-value=1.4e-06 Score=82.98 Aligned_cols=122 Identities=17% Similarity=0.101 Sum_probs=82.6
Q ss_pred hHhhccCCcccEEEccCC-Cccc----ccCcccCCCCCCCEEEecCCCcc-----ccChhhhcCCCCcEEecCCCccccc
Q 037138 497 RRFFDFMPSLTVLNLSNN-GFLT----KLRPGISKLVSLQYLNLSKTSIR-----ELPKELKALVNLKYLNLEHSRYLHT 566 (806)
Q Consensus 497 ~~~~~~l~~L~~L~Ls~~-~~~~----~lp~~i~~l~~L~~L~Ls~n~l~-----~lp~~i~~L~~L~~L~L~~~~~l~~ 566 (806)
...+...+.|++|+|++| .+.. .+...+...++|++|+|++|.|. .+...+...++|++|+|++|.+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344677788888888887 5432 24455666788888888888876 2455566678888888888874322
Q ss_pred ----cccccccCCCCCcEEEe--ecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchhhH
Q 037138 567 ----IPRQLICSFSMLHVLRM--VNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFFAL 628 (806)
Q Consensus 567 ----lp~~~~~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 628 (806)
+... +...++|++|++ ++|.+... +...+...+...++|+.|+++.|.+...
T Consensus 109 g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~---------g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 109 GILALVEA-LQSNTSLIELRIDNQSQPLGNN---------VEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHHHG-GGGCSSCCEEECCCCSSCCCHH---------HHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHH-HHhCCCceEEEecCCCCCCCHH---------HHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 2333 566778999998 66766532 1123445667778899999988877543
No 189
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.09 E-value=2.8e-05 Score=78.61 Aligned_cols=162 Identities=13% Similarity=0.112 Sum_probs=89.7
Q ss_pred CccccchHHHHHHHHHhc---C---------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH
Q 037138 135 PTIVGLNSTLEKVWRCLG---E---------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE 202 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 202 (806)
.+++|.+..++++.+++. . ...+.|.|+|++|+|||++|+.+++.. ... .+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~~- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVEV- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHhh-
Confidence 468999988887766542 1 234568899999999999999999986 222 344444432110
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc--------------C---cccccccCC---CCCCc
Q 037138 203 RIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERI--------------D---LTKVGIPFP---SKNTS 262 (806)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~--------------~---~~~~~~~~~---~~~~s 262 (806)
............+.......+.+|+|||++... . +..+...+. ...+.
T Consensus 79 ------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 146 (262)
T 2qz4_A 79 ------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHV 146 (262)
T ss_dssp ------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCE
T ss_pred ------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCE
Confidence 000001111112222233567899999997531 0 111111111 12345
Q ss_pred EEEEecCC----------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchH
Q 037138 263 KVVFTTRL----------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPL 317 (806)
Q Consensus 263 ~iivTtr~----------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 317 (806)
.||.||.. .+.++..+.++-.+++...+..... ..........+++.+.|.+-
T Consensus 147 ~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 147 IVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL--TQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp EEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC--CBTHHHHHHHHHHTCTTCCH
T ss_pred EEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHHCCCCCH
Confidence 66777643 5667888899988888877633221 11122234677777777653
No 190
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.07 E-value=5.9e-05 Score=77.84 Aligned_cols=165 Identities=14% Similarity=0.066 Sum_probs=94.8
Q ss_pred CccccchHHHHHHHHHhcC------------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH
Q 037138 135 PTIVGLNSTLEKVWRCLGE------------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE 202 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 202 (806)
..++|.+..++.+.+.+.. ...+.+.|+|++|+||||+|+.+++.. .. ..+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~---~~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SA---TFLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TC---EEEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CC---CeEEeeHHHHhh--
Confidence 4689999999999887622 235688999999999999999999976 22 233444433211
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHH-HHhCCCcEEEEEecCCCccCc---------c----ccc---ccCCC---CCCc
Q 037138 203 RIQEKIGERIGLLENRSLEERASGIF-KILSKKKFLLLLDDVWERIDL---------T----KVG---IPFPS---KNTS 262 (806)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~l~-~~l~~k~~LlvlDdv~~~~~~---------~----~~~---~~~~~---~~~s 262 (806)
............+. .....++.+|++|++.....- . .+. ...+. +.+.
T Consensus 93 ------------~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 93 ------------KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp ------------SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CE
T ss_pred ------------cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcE
Confidence 01111222222222 222456789999999643110 0 010 11111 2345
Q ss_pred EEEEecCC--------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchH-HHHHh
Q 037138 263 KVVFTTRL--------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPL-ALITT 322 (806)
Q Consensus 263 ~iivTtr~--------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~ 322 (806)
.||.||.. .+.+...+.++...++...+...... --.+....+++.+.|.+- ++..+
T Consensus 161 ~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~---~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP---LDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp EEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC---SCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 56667764 45667777777777777665332211 113456778888888765 44333
No 191
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.06 E-value=2.3e-05 Score=82.02 Aligned_cols=152 Identities=20% Similarity=0.216 Sum_probs=87.2
Q ss_pred HHHHHHHhcCC--CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHH
Q 037138 144 LEKVWRCLGEE--RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLE 221 (806)
Q Consensus 144 ~~~l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 221 (806)
...+...+... ....+.|+|++|+||||||+.+++.... . . ..++++++ ..+...+...+.. ....
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~-~-~-~~~~~i~~------~~~~~~~~~~~~~---~~~~ 90 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKK-R-G-YRVIYSSA------DDFAQAMVEHLKK---GTIN 90 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHH-T-T-CCEEEEEH------HHHHHHHHHHHHH---TCHH
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHH-C-C-CEEEEEEH------HHHHHHHHHHHHc---CcHH
Confidence 34444444443 3567899999999999999999997621 1 1 23455543 2333333333321 1111
Q ss_pred HHHHHHHHHhCCCcEEEEEecCCCccC----cccccccCCC--CCCcEEEEecCC--------------------ceecc
Q 037138 222 ERASGIFKILSKKKFLLLLDDVWERID----LTKVGIPFPS--KNTSKVVFTTRL--------------------IFKVE 275 (806)
Q Consensus 222 ~~~~~l~~~l~~k~~LlvlDdv~~~~~----~~~~~~~~~~--~~~s~iivTtr~--------------------~~~l~ 275 (806)
.+...+ .+.-+|++||+..... .+.+...+.. ..+..||+||.. .+.++
T Consensus 91 ----~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~ 165 (324)
T 1l8q_A 91 ----EFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIE 165 (324)
T ss_dssp ----HHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECC
T ss_pred ----HHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeC
Confidence 122222 2367999999975331 2223323222 346678888763 46788
Q ss_pred cCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchH
Q 037138 276 CLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPL 317 (806)
Q Consensus 276 ~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl 317 (806)
+ +.++...++...+.......+ .+....|++.+ |.+-
T Consensus 166 ~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 166 L-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVR 202 (324)
T ss_dssp C-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHH
T ss_pred C-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHH
Confidence 8 888888888877642221111 45667788887 6653
No 192
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.05 E-value=1.6e-05 Score=83.22 Aligned_cols=159 Identities=11% Similarity=0.056 Sum_probs=97.1
Q ss_pred CccccchHHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhC
Q 037138 135 PTIVGLNSTLEKVWRCLGEER-VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIG 213 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 213 (806)
..++|.+..++.+.+++..+. ..++.+.|++|+|||++|+.+++.. . ..++.++.+.. ....+ +..+..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l-~-----~~~~~i~~~~~-~~~~i-~~~~~~-- 95 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV-N-----ADMMFVNGSDC-KIDFV-RGPLTN-- 95 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT-T-----EEEEEEETTTC-CHHHH-HTHHHH--
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-C-----CCEEEEccccc-CHHHH-HHHHHH--
Confidence 468999999999999997654 4577778889999999999999876 1 23455554432 22222 111111
Q ss_pred CCCCCCHHHHHHHHHHH--hCCCcEEEEEecCCCcc---CcccccccCCC-CCCcEEEEecCC-------------ceec
Q 037138 214 LLENRSLEERASGIFKI--LSKKKFLLLLDDVWERI---DLTKVGIPFPS-KNTSKVVFTTRL-------------IFKV 274 (806)
Q Consensus 214 ~~~~~~~~~~~~~l~~~--l~~k~~LlvlDdv~~~~---~~~~~~~~~~~-~~~s~iivTtr~-------------~~~l 274 (806)
.... ..+++.++++||+.... ..+.+...+.. ..+.++|+||.. .+.+
T Consensus 96 -------------~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~ 162 (324)
T 3u61_B 96 -------------FASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITF 162 (324)
T ss_dssp -------------HHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEEC
T ss_pred -------------HHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEe
Confidence 1111 12477899999997643 22333332222 356788888865 6788
Q ss_pred ccCChHHHHHHH-------HhhhCCCccCCCCChHHHHHHHHHHhCCchHH
Q 037138 275 ECLRDKEAWELF-------LDKVGEETLDSHLDIPKLAHTLAKECGGLPLA 318 (806)
Q Consensus 275 ~~L~~~e~~~lf-------~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 318 (806)
++++.++-..++ ...+........+ .+....|++.++|.+-.
T Consensus 163 ~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 163 GQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHH
Confidence 899988744332 2222211111111 26677888888887653
No 193
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.04 E-value=5.6e-05 Score=79.31 Aligned_cols=160 Identities=11% Similarity=0.081 Sum_probs=99.8
Q ss_pred chHHHHHHHHHhcCCC-ceEEEEEccCCCCHHHHHHHHHhhcCCCC-------------------CCCCeEEEEEeC---
Q 037138 140 LNSTLEKVWRCLGEER-VGIIGLYGMGGVGKTTLLAQINNKFLDTP-------------------NDFDVVIWVVVS--- 196 (806)
Q Consensus 140 r~~~~~~l~~~l~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~~F~~~~wv~~s--- 196 (806)
.++..+.+.+.+..++ ...+-++|+.|+||||+|+.+++...... .++| ..++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 85 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGK 85 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTC
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccC
Confidence 3556677777777665 45799999999999999999998752111 1233 2333321
Q ss_pred CcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC---
Q 037138 197 KDMQLERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL--- 270 (806)
Q Consensus 197 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~--- 270 (806)
....+..+ +++.+.+... -..+++-++|+|+++.. ...+.+...+.. ..++.+|++|.+
T Consensus 86 ~~~~i~~i-r~l~~~~~~~--------------~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~ 150 (334)
T 1a5t_A 86 NTLGVDAV-REVTEKLNEH--------------ARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPER 150 (334)
T ss_dssp SSBCHHHH-HHHHHHTTSC--------------CTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGG
T ss_pred CCCCHHHH-HHHHHHHhhc--------------cccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHh
Confidence 12222221 2222222110 01356789999999753 223334334444 456777777665
Q ss_pred ----------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHHhh
Q 037138 271 ----------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALITTG 323 (806)
Q Consensus 271 ----------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~~g 323 (806)
.+.+.+++.++..+.+..... . -.+.+..+++.++|.|..+..+.
T Consensus 151 l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~---~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 151 LLATLRSRCRLHYLAPPPEQYAVTWLSREVT-----M---SQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----C---CHHHHHHHHHHTTTCHHHHHHTT
T ss_pred CcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----C---CHHHHHHHHHHcCCCHHHHHHHh
Confidence 789999999999999887751 0 14556889999999998765554
No 194
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.03 E-value=6.3e-05 Score=79.55 Aligned_cols=167 Identities=16% Similarity=0.086 Sum_probs=95.9
Q ss_pred CccccchHHHHHHHHHhcC------------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH
Q 037138 135 PTIVGLNSTLEKVWRCLGE------------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE 202 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 202 (806)
.+++|.+..++.+.+.+.. ...+-|.|+|++|+|||+||+.+++.. ... .+.++.+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~---~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCC---EEEeeHH------
Confidence 4689999999999887621 123468899999999999999999987 222 2333321
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCccC-------------cccccccC---CC-CCCcEEE
Q 037138 203 RIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERID-------------LTKVGIPF---PS-KNTSKVV 265 (806)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~-------------~~~~~~~~---~~-~~~s~ii 265 (806)
++.... ...........+...-..++.+|+||+++.... ...+...+ .. ..+..||
T Consensus 119 ~l~~~~-------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI 191 (355)
T 2qp9_X 119 DLVSKW-------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVL 191 (355)
T ss_dssp HHHSCC----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEE
T ss_pred HHhhhh-------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEE
Confidence 111100 011111111122222245789999999975321 11111111 11 3445666
Q ss_pred EecCC--------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCc-hHHHHHhh
Q 037138 266 FTTRL--------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGL-PLALITTG 323 (806)
Q Consensus 266 vTtr~--------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~~g 323 (806)
.||.. .+.+...+.++-..++...+....... -......|++.+.|. +-.|..+.
T Consensus 192 ~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 192 GATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 67754 567888888888888888765432111 134567888888884 43344443
No 195
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.02 E-value=9.1e-05 Score=79.58 Aligned_cols=166 Identities=15% Similarity=0.062 Sum_probs=94.6
Q ss_pred CccccchHHHHHHHHHhcC------------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH
Q 037138 135 PTIVGLNSTLEKVWRCLGE------------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE 202 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 202 (806)
..++|.+..++.+.+.+.. ...+-|.|+|++|+|||++|+.+++.. .. ..+.++++.-.+.
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~~- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTSK- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhcc-
Confidence 4689999999999887721 234688999999999999999998875 11 2334443322110
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc--------C-----cccccccC---CC--CCCcEE
Q 037138 203 RIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERI--------D-----LTKVGIPF---PS--KNTSKV 264 (806)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~--------~-----~~~~~~~~---~~--~~~s~i 264 (806)
.. ..........+...-...+.+|+||+++... . ...+...+ .. .....|
T Consensus 188 -~~-----------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~v 255 (389)
T 3vfd_A 188 -YV-----------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLV 255 (389)
T ss_dssp ----------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEE
T ss_pred -cc-----------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEE
Confidence 00 0111111111222223456799999996431 0 00111111 11 223455
Q ss_pred EEecCC--------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchH-HHHHh
Q 037138 265 VFTTRL--------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPL-ALITT 322 (806)
Q Consensus 265 ivTtr~--------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPl-ai~~~ 322 (806)
|.||.. .+.+...+.++...++...+...... -..+....|++.+.|..- ++..+
T Consensus 256 I~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 256 MGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP---LTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC---SCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 656654 56788888999988888776543211 124566788888888543 44443
No 196
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.01 E-value=5.6e-05 Score=78.03 Aligned_cols=161 Identities=16% Similarity=0.153 Sum_probs=91.9
Q ss_pred CccccchHHHHHHHHHhcC-------------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccH
Q 037138 135 PTIVGLNSTLEKVWRCLGE-------------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQL 201 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 201 (806)
.+++|.+..++++.+.+.. ...+.|.|+|++|+|||+||+.+++.. .. ..+.+ + .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~---~~i~v--~----~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QA---NFISI--K----G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---EEEEE--C----H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CC---CEEEE--E----h
Confidence 4589999988888876632 345679999999999999999999986 22 12222 2 2
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc------------C----cccccccC---CCCCCc
Q 037138 202 ERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERI------------D----LTKVGIPF---PSKNTS 262 (806)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~------------~----~~~~~~~~---~~~~~s 262 (806)
..+..... + .... .....+.......+.+++||+++... . ...+...+ ....+.
T Consensus 83 ~~l~~~~~---g-~~~~---~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v 155 (301)
T 3cf0_A 83 PELLTMWF---G-ESEA---NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV 155 (301)
T ss_dssp HHHHHHHH---T-TCTT---HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSE
T ss_pred HHHHhhhc---C-chHH---HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCE
Confidence 23322221 1 1111 11222223334568999999997411 0 11111111 113456
Q ss_pred EEEEecCC----------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHH
Q 037138 263 KVVFTTRL----------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLA 318 (806)
Q Consensus 263 ~iivTtr~----------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPla 318 (806)
.||.||.. .+.+...+.++-.+++...+.........++ ..+++.+.|.|-+
T Consensus 156 ~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 156 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred EEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 77777764 4677888888888888776643322222223 3445556666543
No 197
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.98 E-value=7.7e-05 Score=80.42 Aligned_cols=104 Identities=13% Similarity=0.175 Sum_probs=58.1
Q ss_pred CCCC-ccccccccccchhcchhHhhccCCcccEEEccCCC--ccccc-CcccCCCCCCCEEEecCCCccccCh-hhhcCC
Q 037138 477 PTCP-HLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNG--FLTKL-RPGISKLVSLQYLNLSKTSIRELPK-ELKALV 551 (806)
Q Consensus 477 ~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~--~~~~l-p~~i~~l~~L~~L~Ls~n~l~~lp~-~i~~L~ 551 (806)
.+|+ .|+++.+..+ ++.+....|.++.+|+.+.++.+. .+..+ ..+|..+.+|+.+.+..+ ++.++. .+..+.
T Consensus 60 ~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~ 137 (394)
T 4gt6_A 60 CNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCE 137 (394)
T ss_dssp TTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCT
T ss_pred cCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhc
Confidence 3443 4666666543 666666667777777777776541 12222 234556666666655443 344432 345666
Q ss_pred CCcEEecCCCccccccccccccCCCCCcEEEee
Q 037138 552 NLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMV 584 (806)
Q Consensus 552 ~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~ 584 (806)
+|+.+.+..+ ...++...+..+.+|+.+.+.
T Consensus 138 ~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 138 ELDTVTIPEG--VTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp TCCEEECCTT--CCEECTTTTTTCTTCCEEECC
T ss_pred ccccccccce--eeeecccceeccccccccccc
Confidence 6666666544 344555556666666666654
No 198
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.97 E-value=0.00023 Score=77.69 Aligned_cols=168 Identities=13% Similarity=0.081 Sum_probs=95.3
Q ss_pred CccccchHHHHHHHHHhc------------CCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH
Q 037138 135 PTIVGLNSTLEKVWRCLG------------EERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE 202 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 202 (806)
.+++|.+..++.+.+.+. ....+.|.++|++|+|||+||+.+++.. . .. ..+.++.+.-
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~-~-~~---~~~~v~~~~l---- 204 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS---TFFSISSSDL---- 204 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC-C-SS---EEEEECCC------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc-C-CC---CEEEEeHHHH----
Confidence 468999999999888762 1235688999999999999999999975 1 11 1222332211
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCccC-------------cccccccCCC----CCCcEEE
Q 037138 203 RIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERID-------------LTKVGIPFPS----KNTSKVV 265 (806)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~-------------~~~~~~~~~~----~~~s~ii 265 (806)
.... .............. .-..++.+|+||+++.... ...+...+.. ..+..||
T Consensus 205 --~~~~----~g~~~~~~~~~f~~---a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI 275 (444)
T 2zan_A 205 --VSKW----LGESEKLVKNLFQL---ARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVL 275 (444)
T ss_dssp -------------CCCTHHHHHHH---HHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEE
T ss_pred --Hhhh----cchHHHHHHHHHHH---HHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEE
Confidence 1110 01112222222221 1235678999999975310 1112122211 3445666
Q ss_pred EecCC--------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCc-hHHHHHhh
Q 037138 266 FTTRL--------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGL-PLALITTG 323 (806)
Q Consensus 266 vTtr~--------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-Plai~~~g 323 (806)
.||.. .+.+...+.++-..+|...+....... -......|++.+.|. +-.|..+.
T Consensus 276 ~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 276 GATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred ecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 67754 566777888888888887764432111 134567788888885 43444443
No 199
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.93 E-value=4.2e-06 Score=79.64 Aligned_cols=112 Identities=13% Similarity=0.052 Sum_probs=83.5
Q ss_pred CCCCcccccccccc-chhcch----hHhhccCCcccEEEccCCCcccc----cCcccCCCCCCCEEEecCCCccc-----
Q 037138 477 PTCPHLLSLFPNIN-RLKTIA----RRFFDFMPSLTVLNLSNNGFLTK----LRPGISKLVSLQYLNLSKTSIRE----- 542 (806)
Q Consensus 477 ~~~~~L~~L~l~~n-~l~~~~----~~~~~~l~~L~~L~Ls~~~~~~~----lp~~i~~l~~L~~L~Ls~n~l~~----- 542 (806)
..+++|++|++++| .+.... ...+...++|++|+|++|.+... +...+...++|++|+|++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 45788999999998 775422 23466789999999999954332 44556667899999999999883
Q ss_pred cChhhhcCCCCcEEec--CCCccccc----cccccccCCCCCcEEEeecccCC
Q 037138 543 LPKELKALVNLKYLNL--EHSRYLHT----IPRQLICSFSMLHVLRMVNCDYS 589 (806)
Q Consensus 543 lp~~i~~L~~L~~L~L--~~~~~l~~----lp~~~~~~l~~L~~L~l~~~~~~ 589 (806)
+...+...++|++|+| ++|.+... +.. .+...++|++|++++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCCCC
Confidence 5667888899999999 77874322 222 2556789999999988754
No 200
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.93 E-value=1.5e-06 Score=91.91 Aligned_cols=139 Identities=17% Similarity=0.223 Sum_probs=84.1
Q ss_pred CCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccC--CCCCCCEEEecCC--C------ccccChh
Q 037138 477 PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGIS--KLVSLQYLNLSKT--S------IRELPKE 546 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~--~l~~L~~L~Ls~n--~------l~~lp~~ 546 (806)
..+|+|+.|.+++|.-..+++ + .+++|+.|+|..|.+.......+. .+++|++|+|+.+ . +..+...
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 456788888888773123333 3 378899999987754332222333 6888999988632 1 2222222
Q ss_pred h--hcCCCCcEEecCCCccccccccccc--cCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEEe
Q 037138 547 L--KALVNLKYLNLEHSRYLHTIPRQLI--CSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIAL 622 (806)
Q Consensus 547 i--~~L~~L~~L~L~~~~~l~~lp~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 622 (806)
+ ..+++|++|++++|.+....+..++ ..+++|++|+++.|.+... +...+...+..+++|+.|+++.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~---------G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE---------GARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH---------HHHHHHTTHHHHTTCSEEECCS
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH---------HHHHHHhhcccCCcceEEECCC
Confidence 2 3578999999988875433332211 3578899999988766532 0011222345678888998887
Q ss_pred cchhh
Q 037138 623 KSFFA 627 (806)
Q Consensus 623 ~~~~~ 627 (806)
|.+..
T Consensus 317 n~i~d 321 (362)
T 2ra8_A 317 NYLSD 321 (362)
T ss_dssp BBCCH
T ss_pred CcCCH
Confidence 76643
No 201
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.89 E-value=1.4e-05 Score=72.52 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=35.3
Q ss_pred ccccchHHHHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 136 TIVGLNSTLEKVWRCLGE--ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.++|+...+.++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999998887742 233446799999999999999999875
No 202
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.86 E-value=1.3e-05 Score=74.31 Aligned_cols=85 Identities=11% Similarity=0.101 Sum_probs=47.6
Q ss_pred cccEEEccCCCcccccCcccCCCCCCCEEEecCC-Cccc-cChhhhcC----CCCcEEecCCCccccccccccccCCCCC
Q 037138 505 SLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKT-SIRE-LPKELKAL----VNLKYLNLEHSRYLHTIPRQLICSFSML 578 (806)
Q Consensus 505 ~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n-~l~~-lp~~i~~L----~~L~~L~L~~~~~l~~lp~~~~~~l~~L 578 (806)
.|+.||+++|.+...--..+..+++|++|+|++| .|+. --..+..+ ++|++|+|++|..++.---..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 5666777766433332334566777777777776 3551 11233332 3677777777754433111125567777
Q ss_pred cEEEeecccCC
Q 037138 579 HVLRMVNCDYS 589 (806)
Q Consensus 579 ~~L~l~~~~~~ 589 (806)
++|++++|...
T Consensus 142 ~~L~L~~c~~I 152 (176)
T 3e4g_A 142 KYLFLSDLPGV 152 (176)
T ss_dssp CEEEEESCTTC
T ss_pred CEEECCCCCCC
Confidence 77777777543
No 203
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.84 E-value=9.5e-05 Score=81.29 Aligned_cols=137 Identities=15% Similarity=0.195 Sum_probs=77.0
Q ss_pred ccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCC--CCCC-C-eEEEEEeCCcccHHHHHHHHHHH
Q 037138 136 TIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDT--PNDF-D-VVIWVVVSKDMQLERIQEKIGER 211 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~~F-~-~~~wv~~s~~~~~~~~~~~i~~~ 211 (806)
.++||+.+++.+.+.+......-+.++|++|+|||++|+.++...... -... + .++.++++. .
T Consensus 181 ~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~-------------~ 247 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT-------------K 247 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------------
T ss_pred CccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc-------------c
Confidence 589999999999999977666677899999999999999999875210 0011 1 122233220 0
Q ss_pred hCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCccCcccccccCCCCCCcEEEEecCC------------------cee
Q 037138 212 IGLLENRSLEERASGIFKILSKKKFLLLLDDVWERIDLTKVGIPFPSKNTSKVVFTTRL------------------IFK 273 (806)
Q Consensus 212 l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~~~~~~~~~~~~~~s~iivTtr~------------------~~~ 273 (806)
............... .-..++.+|++| ........+...+ .....++|.+|.. .+.
T Consensus 248 ~~g~~e~~~~~~~~~---~~~~~~~iLfiD--~~~~a~~~L~~~L-~~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~ 321 (468)
T 3pxg_A 248 YRGEFEDRLKKVMDE---IRQAGNIILFID--AAIDASNILKPSL-ARGELQCIGATTLDEYRKYIEKDAALERRFQPIQ 321 (468)
T ss_dssp -----CTTHHHHHHH---HHTCCCCEEEEC--C--------CCCT-TSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEE
T ss_pred ccchHHHHHHHHHHH---HHhcCCeEEEEe--CchhHHHHHHHhh-cCCCEEEEecCCHHHHHHHhhcCHHHHHhCccce
Confidence 000001122222222 223567899999 1111111122212 1223455555543 578
Q ss_pred cccCChHHHHHHHHhhhC
Q 037138 274 VECLRDKEAWELFLDKVG 291 (806)
Q Consensus 274 l~~L~~~e~~~lf~~~~~ 291 (806)
+++.+.++...++...+.
T Consensus 322 v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 322 VDQPSVDESIQILQGLRD 339 (468)
T ss_dssp CCCCCHHHHHHHHHHTTT
T ss_pred eCCCCHHHHHHHHHHHHH
Confidence 888999999999887654
No 204
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.81 E-value=1.2e-05 Score=76.06 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=63.1
Q ss_pred chHHHHHHHHHhcC---CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC
Q 037138 140 LNSTLEKVWRCLGE---ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE 216 (806)
Q Consensus 140 r~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 216 (806)
.+..++.+.+++.+ ..-..+.|+|++|+||||||+.+++... ....+ .++++ +..++...+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-~~~g~-~~~~~------~~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-EKKGI-RGYFF------DTKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-HHSCC-CCCEE------EHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH-HHcCC-eEEEE------EHHHHHHHHHHHhcCch
Confidence 34444555555533 2457899999999999999999998762 01111 22333 34445554444332211
Q ss_pred CCCHHHHHHHHHHHhCCCcEEEEEecCCC--ccCcc--cccccCCC--CCCcEEEEecCC
Q 037138 217 NRSLEERASGIFKILSKKKFLLLLDDVWE--RIDLT--KVGIPFPS--KNTSKVVFTTRL 270 (806)
Q Consensus 217 ~~~~~~~~~~l~~~l~~k~~LlvlDdv~~--~~~~~--~~~~~~~~--~~~s~iivTtr~ 270 (806)
.. ... ..+. +.-+|||||++. ...|. .+...+.. ..|..+|+||..
T Consensus 91 ~~---~~~----~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 91 DT---KFL----KTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp CS---HHH----HHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HH---HHH----HHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 11 111 1222 456899999973 22222 22222222 367889999884
No 205
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.77 E-value=0.00015 Score=78.24 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=68.7
Q ss_pred CCCCcccccccccc---chhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccC-hhhhcCCC
Q 037138 477 PTCPHLLSLFPNIN---RLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELP-KELKALVN 552 (806)
Q Consensus 477 ~~~~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp-~~i~~L~~ 552 (806)
.+|++|+.+.+..| .++.+....|..+..|+.+.+..+ ....-...+..+.+|+.+.+..+ +..++ ..+..+.+
T Consensus 84 ~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~ 161 (394)
T 4gt6_A 84 YNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYS 161 (394)
T ss_dssp TTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred hCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceecccc
Confidence 67788888777665 366677777888888887777665 44434456777788888887643 33343 34667778
Q ss_pred CcEEecCCCccccccccccccCCCCCcEEEeec
Q 037138 553 LKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVN 585 (806)
Q Consensus 553 L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~ 585 (806)
|+.+.+..+ +..+....|.. .+|+.+.+..
T Consensus 162 L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~ 191 (394)
T 4gt6_A 162 LHTVTLPDS--VTAIEERAFTG-TALTQIHIPA 191 (394)
T ss_dssp CCEEECCTT--CCEECTTTTTT-CCCSEEEECT
T ss_pred cccccccce--eeEeccccccc-cceeEEEECC
Confidence 888887665 45566554543 5677777654
No 206
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.72 E-value=3.1e-05 Score=74.81 Aligned_cols=111 Identities=23% Similarity=0.217 Sum_probs=61.1
Q ss_pred HHHHHHHHhcCC----CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCC
Q 037138 143 TLEKVWRCLGEE----RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENR 218 (806)
Q Consensus 143 ~~~~l~~~l~~~----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 218 (806)
.++.+.+++... ....+.|+|++|+||||||+.+++... .....++|++++ .+...+...... .
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~~------~~~~~~~~~~~~---~ 104 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYVP------ELFRELKHSLQD---Q 104 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEHH------HHHHHHHHC------C
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEhH------HHHHHHHHHhcc---c
Confidence 444555555432 227889999999999999999999872 223356666542 344444332211 1
Q ss_pred CHHHHHHHHHHHhCCCcEEEEEecCCCc--cCccc--ccc-cCCC--CCCcEEEEecCC
Q 037138 219 SLEERASGIFKILSKKKFLLLLDDVWER--IDLTK--VGI-PFPS--KNTSKVVFTTRL 270 (806)
Q Consensus 219 ~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~--~~~-~~~~--~~~s~iivTtr~ 270 (806)
........+. .. -+|||||++.. ..|.. +.. .+.. ..+.++|+||..
T Consensus 105 ~~~~~~~~~~----~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 105 TMNEKLDYIK----KV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp CCHHHHHHHH----HS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred hHHHHHHHhc----CC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 1222222222 22 39999999642 33322 211 1211 356789998883
No 207
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.71 E-value=3.1e-05 Score=77.48 Aligned_cols=78 Identities=28% Similarity=0.326 Sum_probs=61.7
Q ss_pred CCCccccccccccchhcchh--HhhccCCcccEEEccCCCcccccCcccCCCC--CCCEEEecCCCcc-ccC-------h
Q 037138 478 TCPHLLSLFPNINRLKTIAR--RFFDFMPSLTVLNLSNNGFLTKLRPGISKLV--SLQYLNLSKTSIR-ELP-------K 545 (806)
Q Consensus 478 ~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~--~L~~L~Ls~n~l~-~lp-------~ 545 (806)
++++|++|+|++|.+..++. ..+..+++|++|+|++|.+.+ + ..+..+. +|++|+|++|.+. .+| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 35789999999999887653 557789999999999995444 3 2344444 9999999999987 455 2
Q ss_pred hhhcCCCCcEEe
Q 037138 546 ELKALVNLKYLN 557 (806)
Q Consensus 546 ~i~~L~~L~~L~ 557 (806)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 368899999998
No 208
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.70 E-value=3.7e-05 Score=71.20 Aligned_cols=93 Identities=12% Similarity=0.176 Sum_probs=66.3
Q ss_pred cCcccCCCCCCCEEEecCCCcc-ccChhhhcCCCCcEEecCCCccccccccccccCC----CCCcEEEeecccCCCCCCC
Q 037138 520 LRPGISKLVSLQYLNLSKTSIR-ELPKELKALVNLKYLNLEHSRYLHTIPRQLICSF----SMLHVLRMVNCDYSGKIPL 594 (806)
Q Consensus 520 lp~~i~~l~~L~~L~Ls~n~l~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l----~~L~~L~l~~~~~~~~~~~ 594 (806)
+|.....-.+|++||+++|.++ .--..+..+++|++|+|++|..++.---..+..+ ++|++|++++|....
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT---- 128 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT---- 128 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC----
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC----
Confidence 3433323357999999999987 2234578999999999999975554222225554 479999999996432
Q ss_pred CccccCCccchHHHhcCCCCCCeeeEEecc
Q 037138 595 DSILFGGCESLVEELISLKHLNVLTIALKS 624 (806)
Q Consensus 595 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 624 (806)
+..+..+..+++|+.|+++.+.
T Consensus 129 --------D~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 129 --------DKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp --------HHHHHHGGGCTTCCEEEEESCT
T ss_pred --------HHHHHHHhcCCCCCEEECCCCC
Confidence 2344678889999999999764
No 209
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.69 E-value=6.3e-05 Score=89.45 Aligned_cols=143 Identities=15% Similarity=0.277 Sum_probs=80.6
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCC--CCCCC--CeEEEEEeCCcccHHHHHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLD--TPNDF--DVVIWVVVSKDMQLERIQEKIGE 210 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~~F--~~~~wv~~s~~~~~~~~~~~i~~ 210 (806)
..++||+.+++++++.+.......+.++|++|+||||+|+.+++.... +.... ..+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----------
Confidence 347999999999999997766667889999999999999999987511 11111 1344444322110
Q ss_pred HhCCCCCCCHHHHHHHHHHHh-C-CCcEEEEEecCCCccC-------cccccccCC---CCCCcEEEEecCC--------
Q 037138 211 RIGLLENRSLEERASGIFKIL-S-KKKFLLLLDDVWERID-------LTKVGIPFP---SKNTSKVVFTTRL-------- 270 (806)
Q Consensus 211 ~l~~~~~~~~~~~~~~l~~~l-~-~k~~LlvlDdv~~~~~-------~~~~~~~~~---~~~~s~iivTtr~-------- 270 (806)
+.............+...+ . +++.+|++|++..... ++ ....+. ...+..+|.||..
T Consensus 240 --g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~-~~~~L~~~l~~~~i~~I~at~~~~~~~~~~ 316 (854)
T 1qvr_A 240 --GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVD-AGNMLKPALARGELRLIGATTLDEYREIEK 316 (854)
T ss_dssp --------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------HHHHHTTCCCEEEEECHHHHHHHTT
T ss_pred --cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHH-HHHHHHHHHhCCCeEEEEecCchHHhhhcc
Confidence 0000112333333333333 2 4689999999975320 11 111111 1233445555432
Q ss_pred ---------ceecccCChHHHHHHHHhhh
Q 037138 271 ---------IFKVECLRDKEAWELFLDKV 290 (806)
Q Consensus 271 ---------~~~l~~L~~~e~~~lf~~~~ 290 (806)
.+.+++++.++..+++....
T Consensus 317 d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 317 DPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp CTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred CHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 58899999999999987543
No 210
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00029 Score=74.20 Aligned_cols=158 Identities=13% Similarity=0.144 Sum_probs=92.9
Q ss_pred CccccchHHHHHHHHHhc----C---------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccH
Q 037138 135 PTIVGLNSTLEKVWRCLG----E---------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQL 201 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 201 (806)
.++.|.++.+++|.+.+. . ...+-|-++|++|+|||.||+++++.. ... .+.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCK---FIRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCE---EEEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCC---ceEEEhHHhhc-
Confidence 357889998888877652 1 245678899999999999999999987 222 23444332111
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHH-HHhCCCcEEEEEecCCCccC----------------cccccccC---CCCCC
Q 037138 202 ERIQEKIGERIGLLENRSLEERASGIF-KILSKKKFLLLLDDVWERID----------------LTKVGIPF---PSKNT 261 (806)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~l~-~~l~~k~~LlvlDdv~~~~~----------------~~~~~~~~---~~~~~ 261 (806)
......+.....+. ..-...+.+|++|+++.... ...+...+ ....+
T Consensus 221 -------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 221 -------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp -------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred -------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 00111111122222 22246789999999975210 00111111 11344
Q ss_pred cEEEEecCC----------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch
Q 037138 262 SKVVFTTRL----------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP 316 (806)
Q Consensus 262 s~iivTtr~----------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 316 (806)
-.||.||.. .+.++..+.++-.++|+.+..........++ ..|++.+.|.-
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCC
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCC
Confidence 466777754 6788888888888999877654332223333 55667777754
No 211
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.66 E-value=0.00046 Score=69.33 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=35.7
Q ss_pred CccccchHHHHHHHHHh---cC---------CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCL---GE---------ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+++|.+..++++.+.+ .. ...+-+.|+|++|+||||+|+.+++..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 46899998887776543 21 123458899999999999999999986
No 212
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.65 E-value=0.00026 Score=77.78 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=91.2
Q ss_pred CccccchHHHHHHHHHhc-------------CCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccH
Q 037138 135 PTIVGLNSTLEKVWRCLG-------------EERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQL 201 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 201 (806)
..++|.+..++++.+.+. .....-|.|+|++|+|||++|+.+++.. .. ..+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~---~fv~vn~~----- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GA---FFFLINGP----- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SS---EEEEEEHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CC---CEEEEEch-----
Confidence 357999999999888763 2345678999999999999999999875 22 23344321
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc-------------CcccccccC---CCCCCcEEE
Q 037138 202 ERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERI-------------DLTKVGIPF---PSKNTSKVV 265 (806)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~-------------~~~~~~~~~---~~~~~s~ii 265 (806)
.+. ..+. ..........+.....+++.+|+||+++... ....+...+ ....+..||
T Consensus 273 -~l~----~~~~---g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vI 344 (489)
T 3hu3_A 273 -EIM----SKLA---GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (489)
T ss_dssp -HHH----TSCT---THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEE
T ss_pred -Hhh----hhhc---chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEE
Confidence 111 1000 1111112222333445678899999994210 011121111 113345666
Q ss_pred EecCC----------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCc
Q 037138 266 FTTRL----------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGL 315 (806)
Q Consensus 266 vTtr~----------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 315 (806)
.||.. .+.+...+.++-.+++...+..........+ .++++.+.|.
T Consensus 345 aaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~ 406 (489)
T 3hu3_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGH 406 (489)
T ss_dssp EEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTC
T ss_pred EecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCC
Confidence 67764 4678888888888888877644332222233 4455556654
No 213
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.63 E-value=0.0012 Score=70.57 Aligned_cols=80 Identities=9% Similarity=0.073 Sum_probs=41.4
Q ss_pred CCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccChhhhcCCCCcEEe
Q 037138 478 TCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPKELKALVNLKYLN 557 (806)
Q Consensus 478 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~~i~~L~~L~~L~ 557 (806)
...+|+.+.+.. .++.++...|.++.+|+.++|..+ ....-..+|.++ +|+.+.+..+ ++.++...-...+|+.+.
T Consensus 44 ~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~i~ 119 (379)
T 4h09_A 44 DRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDDFE 119 (379)
T ss_dssp GGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSEEE
T ss_pred cccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCccccc
Confidence 344566655543 356666666777777777777654 333223345444 4555555432 444443322223566666
Q ss_pred cCCC
Q 037138 558 LEHS 561 (806)
Q Consensus 558 L~~~ 561 (806)
+..+
T Consensus 120 lp~~ 123 (379)
T 4h09_A 120 FPGA 123 (379)
T ss_dssp CCTT
T ss_pred CCCc
Confidence 6543
No 214
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.63 E-value=0.00018 Score=73.94 Aligned_cols=136 Identities=15% Similarity=0.139 Sum_probs=83.6
Q ss_pred cchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCC-CCCCeEEEEEeCC-cccHHHHHHHHHHHhCCCC
Q 037138 139 GLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTP-NDFDVVIWVVVSK-DMQLERIQEKIGERIGLLE 216 (806)
Q Consensus 139 gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~ 216 (806)
|-++.++.+.+.+..++.+...++|++|+||||+|+.+.+...... .+.+ ..++..+. ...+.++ +++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 4456677788888776788999999999999999999987521111 2334 34555432 3333333 22333332110
Q ss_pred CCCHHHHHHHHHHHhCCCcEEEEEecCCCc--cCcccccccCCC-CCCcEEEEecCC-----------ceecccCChHHH
Q 037138 217 NRSLEERASGIFKILSKKKFLLLLDDVWER--IDLTKVGIPFPS-KNTSKVVFTTRL-----------IFKVECLRDKEA 282 (806)
Q Consensus 217 ~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~--~~~~~~~~~~~~-~~~s~iivTtr~-----------~~~l~~L~~~e~ 282 (806)
..+++-++|+|+++.. ...+.+...+.. ...+.+|++|.+ .+++.++++++.
T Consensus 79 --------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~~l~~~~i 144 (305)
T 2gno_A 79 --------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEF 144 (305)
T ss_dssp --------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHHH
T ss_pred --------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCCCCCHHHH
Confidence 1356779999999753 233444444433 456777776644 677888888888
Q ss_pred HHHHHhhh
Q 037138 283 WELFLDKV 290 (806)
Q Consensus 283 ~~lf~~~~ 290 (806)
.+.+.+.+
T Consensus 145 ~~~L~~~~ 152 (305)
T 2gno_A 145 RDLVKEKI 152 (305)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88777665
No 215
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00045 Score=73.95 Aligned_cols=158 Identities=15% Similarity=0.192 Sum_probs=91.9
Q ss_pred CccccchHHHHHHHHHhc----C---------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccH
Q 037138 135 PTIVGLNSTLEKVWRCLG----E---------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQL 201 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 201 (806)
.++.|-++.+++|.+.+. . ...+-|-++|++|+|||+||+++++.. ... .+.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhcc-
Confidence 357889988888877652 1 246788999999999999999999987 222 33444332111
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHH-HHhCCCcEEEEEecCCCcc--------C--------cccccccC---CCCCC
Q 037138 202 ERIQEKIGERIGLLENRSLEERASGIF-KILSKKKFLLLLDDVWERI--------D--------LTKVGIPF---PSKNT 261 (806)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~l~-~~l~~k~~LlvlDdv~~~~--------~--------~~~~~~~~---~~~~~ 261 (806)
............+. ..-...+.+|++|+++... . +..+...+ ....+
T Consensus 254 -------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 320 (437)
T 4b4t_L 254 -------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQ 320 (437)
T ss_dssp -------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTS
T ss_pred -------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 00111111112222 2224678999999997421 0 00111111 11344
Q ss_pred cEEEEecCC----------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch
Q 037138 262 SKVVFTTRL----------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP 316 (806)
Q Consensus 262 s~iivTtr~----------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 316 (806)
..||.||.. .+.+...+.++-.++|+.+..........++ ..+++.+.|.-
T Consensus 321 vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 321 TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred eEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 567777765 5677778888888888877644322223333 45566676654
No 216
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.61 E-value=0.00048 Score=80.82 Aligned_cols=139 Identities=14% Similarity=0.173 Sum_probs=79.4
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCC--CCC-C-eEEEEEeCCcccHHHHHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTP--NDF-D-VVIWVVVSKDMQLERIQEKIGE 210 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~~F-~-~~~wv~~s~~~~~~~~~~~i~~ 210 (806)
..++||+.+++++...+......-+.++|++|+|||++|+.+++...... ... + ..+.++.+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~------------- 246 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT------------- 246 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccc-------------
Confidence 35899999999999999776666788999999999999999998752111 000 1 112222100
Q ss_pred HhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCccCcccccccCCCCCCcEEEEecCC------------------ce
Q 037138 211 RIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERIDLTKVGIPFPSKNTSKVVFTTRL------------------IF 272 (806)
Q Consensus 211 ~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~~~~~~~~~~~~~~s~iivTtr~------------------~~ 272 (806)
.............. ...-..++.+|++|. .......+...+ .....++|.||.. .+
T Consensus 247 ~~~G~~e~~l~~~~---~~~~~~~~~iLfiD~--~~~~~~~L~~~l-~~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i 320 (758)
T 3pxi_A 247 KYRGEFEDRLKKVM---DEIRQAGNIILFIDA--AIDASNILKPSL-ARGELQCIGATTLDEYRKYIEKDAALERRFQPI 320 (758)
T ss_dssp ------CTTHHHHH---HHHHTCCCCEEEECC----------CCCT-TSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEE
T ss_pred cccchHHHHHHHHH---HHHHhcCCEEEEEcC--chhHHHHHHHHH-hcCCEEEEeCCChHHHHHHhhccHHHHhhCcEE
Confidence 00000012222222 222346788999992 111111122211 1334566666643 67
Q ss_pred ecccCChHHHHHHHHhhhCC
Q 037138 273 KVECLRDKEAWELFLDKVGE 292 (806)
Q Consensus 273 ~l~~L~~~e~~~lf~~~~~~ 292 (806)
.++..+.++...++......
T Consensus 321 ~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 321 QVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp ECCCCCHHHHHHHHHHTTTT
T ss_pred EeCCCCHHHHHHHHHHHHHH
Confidence 88999999999999876543
No 217
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.61 E-value=0.00039 Score=72.79 Aligned_cols=155 Identities=20% Similarity=0.195 Sum_probs=87.4
Q ss_pred CccccchHHHHHHHHHhcC-----CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLGE-----ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIG 209 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 209 (806)
..++|.+..++.+...+.. .....+.++|++|+||||||+.+++.. . ..|. ....+-.....++
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l-~--~~~~---~~sg~~~~~~~~l----- 93 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL-Q--TNIH---VTSGPVLVKQGDM----- 93 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH-T--CCEE---EEETTTCCSHHHH-----
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh-C--CCEE---EEechHhcCHHHH-----
Confidence 3568988877777666542 345789999999999999999999986 1 2211 1111111111111
Q ss_pred HHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc--CcccccccCC---------CC----------CCcEEE-Ee
Q 037138 210 ERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERI--DLTKVGIPFP---------SK----------NTSKVV-FT 267 (806)
Q Consensus 210 ~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~--~~~~~~~~~~---------~~----------~~s~ii-vT 267 (806)
. .+...+ .++-++++|++.... ..+.+...+. .+ ....++ .|
T Consensus 94 --------------~-~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at 157 (334)
T 1in4_A 94 --------------A-AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGAT 157 (334)
T ss_dssp --------------H-HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEE
T ss_pred --------------H-HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEec
Confidence 1 111112 234467788875321 1111100000 00 111222 34
Q ss_pred cCC-------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHH
Q 037138 268 TRL-------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLAL 319 (806)
Q Consensus 268 tr~-------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai 319 (806)
++. .+.+++.+.++-.+++.+.+...... --.+.+..|++.+.|.|-.+
T Consensus 158 ~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~---~~~~~~~~ia~~~~G~~R~a 219 (334)
T 1in4_A 158 TRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE---IEDAAAEMIAKRSRGTPRIA 219 (334)
T ss_dssp SCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC---BCHHHHHHHHHTSTTCHHHH
T ss_pred CCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHhcCCChHHH
Confidence 432 57899999999999998876322111 11567899999999999654
No 218
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00092 Score=70.60 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=90.8
Q ss_pred CccccchHHHHHHHHHhc----C---------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccH
Q 037138 135 PTIVGLNSTLEKVWRCLG----E---------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQL 201 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 201 (806)
.++.|.++.+++|.+.+. . ...+-|-++|++|+|||.||+++++.. ... .+.++.+.-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~---fi~v~~s~l~-- 253 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SAT---FLRIVGSELI-- 253 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCE---EEEEESGGGC--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCC---EEEEEHHHhh--
Confidence 346789988888877552 1 245789999999999999999999987 222 2333332211
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHH-HhCCCcEEEEEecCCCccC----------------ccccccc---CCCCCC
Q 037138 202 ERIQEKIGERIGLLENRSLEERASGIFK-ILSKKKFLLLLDDVWERID----------------LTKVGIP---FPSKNT 261 (806)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlvlDdv~~~~~----------------~~~~~~~---~~~~~~ 261 (806)
.....+.+.....+.. .-...+.+|++|+++.... +..+... +....+
T Consensus 254 ------------sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ 321 (437)
T 4b4t_I 254 ------------QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGD 321 (437)
T ss_dssp ------------CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSS
T ss_pred ------------hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCC
Confidence 0001111111222222 2235689999999874210 0011111 111334
Q ss_pred cEEEEecCC----------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch
Q 037138 262 SKVVFTTRL----------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP 316 (806)
Q Consensus 262 s~iivTtr~----------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 316 (806)
..||.||.. .+.+..-+.++-.++|+.+..........++ ..|++.+.|.-
T Consensus 322 ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 322 VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp EEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSCC
T ss_pred EEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 466777754 5778888888888899877754332333344 45566676653
No 219
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.50 E-value=0.00065 Score=79.89 Aligned_cols=144 Identities=19% Similarity=0.273 Sum_probs=84.1
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCC--C-CCCCeEEE-EEeCCcccHHHHHHHHHH
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDT--P-NDFDVVIW-VVVSKDMQLERIQEKIGE 210 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~-~~F~~~~w-v~~s~~~~~~~~~~~i~~ 210 (806)
..++||+.+++++.+.+......-+.|+|++|+||||+|+.+++..... . ......+| +..+.-.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~----------- 254 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL----------- 254 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh-----------
Confidence 3579999999999999987767778899999999999999999875110 0 01222222 2211100
Q ss_pred HhCCCCCCCHHHHHHHHHHHh-CCCcEEEEEecCCCcc--------Ccc--cccccCCCCCCcEEEEecCC---------
Q 037138 211 RIGLLENRSLEERASGIFKIL-SKKKFLLLLDDVWERI--------DLT--KVGIPFPSKNTSKVVFTTRL--------- 270 (806)
Q Consensus 211 ~l~~~~~~~~~~~~~~l~~~l-~~k~~LlvlDdv~~~~--------~~~--~~~~~~~~~~~s~iivTtr~--------- 270 (806)
.+.......+.....+.+.+ ..++.+|++||+.... ..+ .+...+....+..+|.+|..
T Consensus 255 -~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~ 333 (758)
T 1r6b_X 255 -AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEK 333 (758)
T ss_dssp -CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCC
T ss_pred -ccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhc
Confidence 00111223444444444444 3467899999997531 111 11112222334455555542
Q ss_pred ---------ceecccCChHHHHHHHHhhh
Q 037138 271 ---------IFKVECLRDKEAWELFLDKV 290 (806)
Q Consensus 271 ---------~~~l~~L~~~e~~~lf~~~~ 290 (806)
.+.++..+.++..+++...+
T Consensus 334 d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 334 DRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp TTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 46677788888777776543
No 220
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.0004 Score=74.09 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=91.7
Q ss_pred ccccchHHHHHHHHHhc----C---------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH
Q 037138 136 TIVGLNSTLEKVWRCLG----E---------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE 202 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 202 (806)
++.|.++.+++|.+.+. . ...+-|-++|++|+|||+||+++++.. ... .+.|..+.-.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~---fi~vs~s~L~s-- 281 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DAT---FIRVIGSELVQ-- 281 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCC--
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCC---eEEEEhHHhhc--
Confidence 57899998888877542 1 356788899999999999999999987 222 23444322110
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHH-HHhCCCcEEEEEecCCCccC--------c--------ccccccC---CCCCCc
Q 037138 203 RIQEKIGERIGLLENRSLEERASGIF-KILSKKKFLLLLDDVWERID--------L--------TKVGIPF---PSKNTS 262 (806)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~l~-~~l~~k~~LlvlDdv~~~~~--------~--------~~~~~~~---~~~~~s 262 (806)
......+.....+. ..-...+.+|++|+++.... . ..+...+ ....+.
T Consensus 282 ------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 349 (467)
T 4b4t_H 282 ------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNI 349 (467)
T ss_dssp ------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTE
T ss_pred ------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcE
Confidence 00111111111222 22246789999999974210 0 0011111 113344
Q ss_pred EEEEecCC----------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch
Q 037138 263 KVVFTTRL----------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP 316 (806)
Q Consensus 263 ~iivTtr~----------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 316 (806)
.||.||.. .+.+...+.++-.++|+.++.........++ ..|++.|.|.-
T Consensus 350 iVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 350 KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp EEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSCC
T ss_pred EEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCCC
Confidence 56667754 6778888888888899877754332222333 45667777753
No 221
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.00022 Score=76.29 Aligned_cols=158 Identities=14% Similarity=0.159 Sum_probs=90.1
Q ss_pred CccccchHHHHHHHHHhc----C---------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccH
Q 037138 135 PTIVGLNSTLEKVWRCLG----E---------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQL 201 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 201 (806)
.++.|-++.+++|.+.+. . ...+-|-++|++|+|||.||+++++.. ... .+.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~~- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NAT---FLKLAAPQLVQ- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCS-
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCC---EEEEehhhhhh-
Confidence 357899999888877542 1 246788999999999999999999987 222 33444322110
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHH-HhCCCcEEEEEecCCCc----cC------------cccccccCCC---CCC
Q 037138 202 ERIQEKIGERIGLLENRSLEERASGIFK-ILSKKKFLLLLDDVWER----ID------------LTKVGIPFPS---KNT 261 (806)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~~LlvlDdv~~~----~~------------~~~~~~~~~~---~~~ 261 (806)
......+.....+.. .-...+.+|++|+++.. .. ...+...+.. ..+
T Consensus 254 -------------~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 320 (434)
T 4b4t_M 254 -------------MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDR 320 (434)
T ss_dssp -------------SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCS
T ss_pred -------------cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCC
Confidence 001111111122221 12346899999998631 00 0111111211 234
Q ss_pred cEEEEecCC----------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch
Q 037138 262 SKVVFTTRL----------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP 316 (806)
Q Consensus 262 s~iivTtr~----------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 316 (806)
-.||.||.. .+.++..+.++-.++|+.+..........++ ..|++.+.|.-
T Consensus 321 ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~s 387 (434)
T 4b4t_M 321 VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEFN 387 (434)
T ss_dssp SEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSCC
T ss_pred EEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 456667765 6778888888888888776643222222233 45667777653
No 222
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.45 E-value=5.3e-05 Score=68.51 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=33.8
Q ss_pred ccccchHHHHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 136 TIVGLNSTLEKVWRCLGE--ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.++|++..++++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 578999998888887643 233447799999999999999998865
No 223
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.00068 Score=72.47 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=37.7
Q ss_pred CccccchHHHHHHHHHhc----C---------CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLG----E---------ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.++.|-++.+++|.+.+. . ...+-|-++|++|+|||+||+++++..
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999888877652 1 245678999999999999999999987
No 224
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.38 E-value=9.5e-05 Score=74.95 Aligned_cols=46 Identities=22% Similarity=0.187 Sum_probs=35.8
Q ss_pred CccccchHHHHHHHHHhcC------------CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGE------------ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|.+..++++.+.+.. ...+-+.|+|++|+|||++|+.+++..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 4689999888887765531 123347799999999999999999986
No 225
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.37 E-value=0.0007 Score=70.09 Aligned_cols=46 Identities=24% Similarity=0.239 Sum_probs=38.3
Q ss_pred CccccchHHHHHHHHHhcC--------------CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGE--------------ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999998877743 235568899999999999999999986
No 226
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.33 E-value=0.0006 Score=74.21 Aligned_cols=159 Identities=14% Similarity=0.111 Sum_probs=86.7
Q ss_pred CccccchHHHHHHHHHh---cC---------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH
Q 037138 135 PTIVGLNSTLEKVWRCL---GE---------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE 202 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 202 (806)
.+++|.+..++++.+.+ .. .-.+-|.|+|++|+|||+||+.+++.. ... .+.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~---f~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVP---FFHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCC---EEEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCC---eeeCCHHHHHHH-
Confidence 46899998877776654 22 123458899999999999999999986 222 233443321110
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCccC----------------cccccccC---CCCCCcE
Q 037138 203 RIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERID----------------LTKVGIPF---PSKNTSK 263 (806)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~----------------~~~~~~~~---~~~~~s~ 263 (806)
. ...........+.......+.+|+||+++.... +.++...+ ....+..
T Consensus 89 ---------~---~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~vi 156 (476)
T 2ce7_A 89 ---------F---VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGII 156 (476)
T ss_dssp ---------C---TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEE
T ss_pred ---------H---hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEE
Confidence 0 000011112223333456789999999964210 11111111 1123456
Q ss_pred EEEecCC----------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch
Q 037138 264 VVFTTRL----------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP 316 (806)
Q Consensus 264 iivTtr~----------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 316 (806)
||.||.. .+.++..+.++-.++++.++.........+ ...|++.+.|..
T Consensus 157 VIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 157 VMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred EEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 6667654 455666777777777776654332222222 234667777765
No 227
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.29 E-value=0.00011 Score=66.86 Aligned_cols=100 Identities=14% Similarity=0.065 Sum_probs=57.6
Q ss_pred cccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC
Q 037138 137 IVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE 216 (806)
Q Consensus 137 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 216 (806)
++|.+.. ....+.+-.-..++|+|+.|+|||||++.+++... . ..+ .++++...+-...
T Consensus 20 ~~g~n~~---~~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-~-~g~-~~~~~~~~~~~~~--------------- 78 (149)
T 2kjq_A 20 LGTENAE---LVYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQAL-E-AGK-NAAYIDAASMPLT--------------- 78 (149)
T ss_dssp CSCCTHH---HHHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHH-T-TTC-CEEEEETTTSCCC---------------
T ss_pred CcCccHH---HHHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHH-h-cCC-cEEEEcHHHhhHH---------------
Confidence 3454443 33344332556899999999999999999999872 2 122 2566664432111
Q ss_pred CCCHHHHHHHHHHHhCCCcEEEEEecCCCccC--cccccccCCC--CCCc-EEEEecCC
Q 037138 217 NRSLEERASGIFKILSKKKFLLLLDDVWERID--LTKVGIPFPS--KNTS-KVVFTTRL 270 (806)
Q Consensus 217 ~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~~--~~~~~~~~~~--~~~s-~iivTtr~ 270 (806)
.+..+.-+|||||+..... .+.+...+.. ..|. .||+||+.
T Consensus 79 -------------~~~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 -------------DAAFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp -------------GGGGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred -------------HHHhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 1123456889999975322 1222222222 2334 48888884
No 228
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.25 E-value=0.00026 Score=73.49 Aligned_cols=59 Identities=20% Similarity=0.388 Sum_probs=42.9
Q ss_pred ccccchHHHHHHHHHhcCC---------CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC
Q 037138 136 TIVGLNSTLEKVWRCLGEE---------RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK 197 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 197 (806)
.++|.+..++.+...+... ....+.++|++|+||||+|+.+++... ..-...+.++++.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRIDMTE 85 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEEGGG
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEeeccc
Confidence 5789999988888777431 245899999999999999999999762 1112345555543
No 229
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.23 E-value=0.0016 Score=71.29 Aligned_cols=46 Identities=24% Similarity=0.254 Sum_probs=36.1
Q ss_pred CccccchHHHHHHHHHh---cCC--CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCL---GEE--RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l---~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|.+..++.+..++ ..+ ..+-+.++|++|+|||++|+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 56899999887655443 333 33578899999999999999999876
No 230
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.22 E-value=0.0015 Score=75.38 Aligned_cols=158 Identities=15% Similarity=0.143 Sum_probs=91.2
Q ss_pred ccccchHHHHHHHHHhc----C---------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH
Q 037138 136 TIVGLNSTLEKVWRCLG----E---------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE 202 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 202 (806)
++.|.++.+++|.+.+. . ..++-|-++|++|+|||+||+++++.. ..+ .+.|+.+
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~------ 272 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGP------ 272 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHH------
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhH------
Confidence 46788888877776542 1 246789999999999999999999986 222 3444321
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCCcc--------Cc-----ccccccC---CCCCCcEEEE
Q 037138 203 RIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWERI--------DL-----TKVGIPF---PSKNTSKVVF 266 (806)
Q Consensus 203 ~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~~~--------~~-----~~~~~~~---~~~~~s~iiv 266 (806)
++ . +..................+..+.+|+||+++... +. .++...+ ....+..||.
T Consensus 273 ~l----~---sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIa 345 (806)
T 3cf2_A 273 EI----M---SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA 345 (806)
T ss_dssp HH----H---SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEE
T ss_pred Hh----h---cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEE
Confidence 11 1 11001111222222333445678999999996421 00 1111111 1122345566
Q ss_pred ecCC----------------ceecccCChHHHHHHHHhhhCCCccCCCCChHHHHHHHHHHhCCch
Q 037138 267 TTRL----------------IFKVECLRDKEAWELFLDKVGEETLDSHLDIPKLAHTLAKECGGLP 316 (806)
Q Consensus 267 Ttr~----------------~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 316 (806)
||.. .+.+...+.++-.++|+.+..........++ ..|++++.|.-
T Consensus 346 aTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl----~~lA~~T~Gfs 407 (806)
T 3cf2_A 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHV 407 (806)
T ss_dssp ECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCH----HHHHHHCCSCC
T ss_pred ecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhcCCCC
Confidence 6654 5778888888888888877654332333333 45677777764
No 231
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.21 E-value=0.00092 Score=68.79 Aligned_cols=46 Identities=11% Similarity=0.215 Sum_probs=36.9
Q ss_pred CccccchHHHHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGE--ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|+...+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3578999999888887743 334457799999999999999999875
No 232
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.10 E-value=0.0055 Score=62.60 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+..+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678899999999999999999987
No 233
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.07 E-value=0.0047 Score=68.99 Aligned_cols=45 Identities=31% Similarity=0.414 Sum_probs=35.5
Q ss_pred ccccchHHHHHHHHHhc------CCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 136 TIVGLNSTLEKVWRCLG------EERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+++|.++.++.+.+.+. .....++.++|++|+||||||+.++...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46888887777755442 1245689999999999999999999986
No 234
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.87 E-value=0.0081 Score=60.61 Aligned_cols=46 Identities=24% Similarity=0.185 Sum_probs=33.8
Q ss_pred CccccchHHHHHHHHHhc----C---------CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLG----E---------ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.++.|.++.++++.+.+. . .-.+-+.++|++|+||||||+.++...
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc
Confidence 357788888887766542 1 112239999999999999999999976
No 235
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.85 E-value=0.0044 Score=72.69 Aligned_cols=46 Identities=24% Similarity=0.280 Sum_probs=37.5
Q ss_pred CccccchHHHHHHHHHhcC-------------CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGE-------------ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+++|.+..++++.+++.. .....|.|+|++|+||||||+.++...
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3478999988888777632 245679999999999999999999875
No 236
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.83 E-value=0.013 Score=59.46 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=34.2
Q ss_pred CccccchHHHHHHHHHhc---C---------CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLG---E---------ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+++|.+..++++.+... . .-.+-+.|+|++|+||||||+.++...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 468898887776655431 1 111238999999999999999999986
No 237
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.77 E-value=0.00063 Score=69.03 Aligned_cols=69 Identities=16% Similarity=0.323 Sum_probs=45.3
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEe--CCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCC
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVV--SKDMQLERIQEKIGERIGLLENRSLEERASGIFKILSK 233 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~ 233 (806)
-+++.|+|++|+||||||.+++... . ..++|+++ ....+. . ..+.+...+.+.+.+..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G-----~~VlyIs~~~eE~v~~-------------~-~~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-G-----GKDKYATVRFGEPLSG-------------Y-NTDFNVFVDDIARAMLQ 182 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-H-----TTSCCEEEEBSCSSTT-------------C-BCCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-C-----CCEEEEEecchhhhhh-------------h-hcCHHHHHHHHHHHHhh
Confidence 4577899999999999999998752 1 12455665 222110 0 13455556666666655
Q ss_pred CcEEEEEecCCC
Q 037138 234 KKFLLLLDDVWE 245 (806)
Q Consensus 234 k~~LlvlDdv~~ 245 (806)
.+ +||+|++..
T Consensus 183 ~~-LLVIDsI~a 193 (331)
T 2vhj_A 183 HR-VIVIDSLKN 193 (331)
T ss_dssp CS-EEEEECCTT
T ss_pred CC-EEEEecccc
Confidence 56 999999864
No 238
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.75 E-value=0.014 Score=58.15 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=33.6
Q ss_pred CccccchHHHHHHHHHhc---C---------CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLG---E---------ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+++|.+..+.++.+... . .-.+-+.|+|++|+||||||+.++...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 457888877666654331 1 112238999999999999999999986
No 239
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.69 E-value=0.0042 Score=60.40 Aligned_cols=84 Identities=21% Similarity=0.235 Sum_probs=52.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCC-----------CCCC---CH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGL-----------LENR---SL 220 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~-----------~~~~---~~ 220 (806)
.-.++.|+|.+|+||||||..++. . . -..++|++....++...+.. +.+..+. .... ..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 446899999999999999999988 3 1 14688888776555555443 3222221 1111 12
Q ss_pred HHHHHHHHHHhCCCcEEEEEecCCC
Q 037138 221 EERASGIFKILSKKKFLLLLDDVWE 245 (806)
Q Consensus 221 ~~~~~~l~~~l~~k~~LlvlDdv~~ 245 (806)
.+....++..+..+.-++|+|.+-.
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 2344445555544577999999854
No 240
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.62 E-value=0.012 Score=64.35 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=35.1
Q ss_pred CccccchHHHHHHHHHh---cCC---------CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCL---GEE---------RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l---~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+++|.+..+.++.+.. ... -.+-|.|+|++|+||||||+.++...
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46899998877776544 221 12348999999999999999999986
No 241
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.58 E-value=0.005 Score=64.17 Aligned_cols=83 Identities=17% Similarity=0.158 Sum_probs=57.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC-------CCCHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE-------NRSLEERASGI 227 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~l 227 (806)
.-.++.|+|++|+||||||.+++.... ..-..++|++....++.. .+++++... ..+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 457999999999999999999998762 112357889877766654 445554332 45566666655
Q ss_pred HHHhC-CCcEEEEEecCCC
Q 037138 228 FKILS-KKKFLLLLDDVWE 245 (806)
Q Consensus 228 ~~~l~-~k~~LlvlDdv~~ 245 (806)
...++ .+.-++|+|.+..
T Consensus 132 ~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHHTSCCSEEEEECTTT
T ss_pred HHHhhhcCCCeEEehHhhh
Confidence 55543 4556899999854
No 242
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.51 E-value=0.00083 Score=78.85 Aligned_cols=59 Identities=22% Similarity=0.389 Sum_probs=42.9
Q ss_pred CccccchHHHHHHHHHhcC---------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeC
Q 037138 135 PTIVGLNSTLEKVWRCLGE---------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVS 196 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s 196 (806)
..++|.+..++.+.+.+.. .....+.++|++|+|||++|+.+++... ..-...+.++++
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s 558 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMS 558 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGG
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEech
Confidence 4579999999888887742 1234799999999999999999999861 222334556554
No 243
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.40 E-value=0.0046 Score=65.98 Aligned_cols=127 Identities=15% Similarity=0.176 Sum_probs=81.1
Q ss_pred CCCCccccccccccchhcchhHhhccCCcccEEEccCCCcccccCcccCCCCCCCEEEecCCCccccCh-hhhcCCCCcE
Q 037138 477 PTCPHLLSLFPNINRLKTIARRFFDFMPSLTVLNLSNNGFLTKLRPGISKLVSLQYLNLSKTSIRELPK-ELKALVNLKY 555 (806)
Q Consensus 477 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~l~~L~~L~Ls~n~l~~lp~-~i~~L~~L~~ 555 (806)
..+.+|+.+.+..+ +..+....|..+..|+.+.+..+ ....-...+.++.+|+.+.+..+ +..++. .+..+++|+.
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 45666666666543 55666666777888888887766 44444456677778888877543 555543 4677788888
Q ss_pred EecCCCccccccccccccCCCCCcEEEeecccCCCCCCCCccccCCccchHHHhcCCCCCCeeeEE
Q 037138 556 LNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYSGKIPLDSILFGGCESLVEELISLKHLNVLTIA 621 (806)
Q Consensus 556 L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 621 (806)
+.+.++. +..++...|.++++|+.+.+..+ +. .++ ...+.++.+|+.+.+.
T Consensus 291 i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~------------~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 291 VVMDNSA-IETLEPRVFMDCVKLSSVTLPTA-LK-TIQ------------VYAFKNCKALSTISYP 341 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EEC------------TTTTTTCTTCCCCCCC
T ss_pred ccccccc-cceehhhhhcCCCCCCEEEcCcc-cc-EEH------------HHHhhCCCCCCEEEEC
Confidence 8887665 56677767778888888877533 11 111 0245666667666664
No 244
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.30 E-value=0.0099 Score=62.11 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=55.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC-------CCCHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE-------NRSLEERASGI 227 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~l 227 (806)
.-.++.|+|.+|+||||||.++..... ..=..++|++....++.. .++.++... ..+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~---~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 456899999999999999999987652 112468999988766643 244554321 33555555555
Q ss_pred HHHhC-CCcEEEEEecCCC
Q 037138 228 FKILS-KKKFLLLLDDVWE 245 (806)
Q Consensus 228 ~~~l~-~k~~LlvlDdv~~ 245 (806)
....+ .+.-+||+|.+..
T Consensus 132 ~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHHTTTCCSEEEEECGGG
T ss_pred HHHHhcCCCCEEEEcChHh
Confidence 54443 4566999999853
No 245
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.17 E-value=0.01 Score=58.58 Aligned_cols=89 Identities=17% Similarity=0.228 Sum_probs=54.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCC----CCCeEEEEEeCCcccHHHHHHHHHHHhCCC-----------CCCC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPN----DFDVVIWVVVSKDMQLERIQEKIGERIGLL-----------ENRS 219 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-----------~~~~ 219 (806)
.-.++.|+|++|+||||||..++.... ... .-..++|++....+....+. .+++.++.. ...+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~-~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQ-LPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTT-SCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHh-CchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCC
Confidence 446999999999999999999988631 111 13578999877755544432 333444322 1223
Q ss_pred HHHH---HHHHHHHhC-CCcEEEEEecCCC
Q 037138 220 LEER---ASGIFKILS-KKKFLLLLDDVWE 245 (806)
Q Consensus 220 ~~~~---~~~l~~~l~-~k~~LlvlDdv~~ 245 (806)
..+. ...+...+. .+.-+||+|++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 3332 223444443 4677899999854
No 246
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.15 E-value=0.015 Score=58.80 Aligned_cols=84 Identities=13% Similarity=0.157 Sum_probs=57.0
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC-------CCCHHHH-HHHHH
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE-------NRSLEER-ASGIF 228 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~-~~~l~ 228 (806)
.++-|.|++|+||||||.++..... ....=..++||+....++.. .+++++... +.+.++. ...+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~-~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYM-RQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHH-HHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 4789999999999999999887752 11112478999988877754 266666543 4455555 33332
Q ss_pred HH--h-CCCcEEEEEecCCCc
Q 037138 229 KI--L-SKKKFLLLLDDVWER 246 (806)
Q Consensus 229 ~~--l-~~k~~LlvlDdv~~~ 246 (806)
.. + .++.-++|+|-|...
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHhhccCceEEEEeccccc
Confidence 22 3 457789999998653
No 247
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.14 E-value=0.014 Score=61.30 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=56.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC-------CCCHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE-------NRSLEERASGI 227 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~l 227 (806)
.-.++.|.|.+|+||||||.+++.... ..-..++|++....++.. .++.++... ..+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~---~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ---KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH---HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 446889999999999999999887752 112368999988776654 244444321 34566666666
Q ss_pred HHHhC-CCcEEEEEecCCC
Q 037138 228 FKILS-KKKFLLLLDDVWE 245 (806)
Q Consensus 228 ~~~l~-~k~~LlvlDdv~~ 245 (806)
....+ ...-+||+|.+..
T Consensus 145 ~~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHHTTTCCSEEEEECTTT
T ss_pred HHHHhcCCCCEEEEeChHH
Confidence 65554 3455899999853
No 248
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.13 E-value=0.0051 Score=60.38 Aligned_cols=39 Identities=33% Similarity=0.302 Sum_probs=28.3
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK 197 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 197 (806)
-.+++|+|++|+|||||++.++..... .-..++|+....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~ 61 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE 61 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc
Confidence 468999999999999999999866411 112466766543
No 249
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.05 E-value=0.024 Score=58.67 Aligned_cols=89 Identities=19% Similarity=0.277 Sum_probs=55.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCC---CCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC-----------CCCH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTP---NDFDVVIWVVVSKDMQLERIQEKIGERIGLLE-----------NRSL 220 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----------~~~~ 220 (806)
.-.++.|+|.+|+||||||.+++....... ..-..++|++....++..++.+ +++.++... ..+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 456899999999999999999988751110 0124789999888777666553 345554321 2222
Q ss_pred HH---HHHHHHHHhC--CCcEEEEEecCC
Q 037138 221 EE---RASGIFKILS--KKKFLLLLDDVW 244 (806)
Q Consensus 221 ~~---~~~~l~~~l~--~k~~LlvlDdv~ 244 (806)
++ ....+...++ .+.-+||+|.+.
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 32 2334444443 355678888774
No 250
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.03 E-value=0.0031 Score=59.10 Aligned_cols=113 Identities=19% Similarity=0.093 Sum_probs=63.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC---cccHHHHHHHHHH---HhCCCC---CC-------
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK---DMQLERIQEKIGE---RIGLLE---NR------- 218 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~~---~l~~~~---~~------- 218 (806)
....|-|++..|.||||.|-...-+. ..+=-.+.++.+-+ ......++..+.- +.+... ..
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA---~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~ 103 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARA---VGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTA 103 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHH---HHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHH
Confidence 34677788888899999999888876 23333566665433 2334444444310 000000 00
Q ss_pred CHHHHHHHHHHHhCCCcE-EEEEecCCC-----ccCcccccccCCC-CCCcEEEEecCC
Q 037138 219 SLEERASGIFKILSKKKF-LLLLDDVWE-----RIDLTKVGIPFPS-KNTSKVVFTTRL 270 (806)
Q Consensus 219 ~~~~~~~~l~~~l~~k~~-LlvlDdv~~-----~~~~~~~~~~~~~-~~~s~iivTtr~ 270 (806)
.........++.+.+.+| |||||++-. ..+.+.+...+.. .....||+|+|.
T Consensus 104 ~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ 162 (196)
T 1g5t_A 104 ACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRG 162 (196)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSS
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCC
Confidence 112223345556655555 999999832 2334444444444 567899999996
No 251
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.01 E-value=0.0069 Score=53.22 Aligned_cols=55 Identities=16% Similarity=0.321 Sum_probs=37.1
Q ss_pred EEEecCCCcc--ccChhhhcCCCCcEEecCCCccccccccccccCCCCCcEEEeecccCC
Q 037138 532 YLNLSKTSIR--ELPKELKALVNLKYLNLEHSRYLHTIPRQLICSFSMLHVLRMVNCDYS 589 (806)
Q Consensus 532 ~L~Ls~n~l~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 589 (806)
.++.++++++ .+|..+. .+|++|+|++|+ +..+|.+.|..+++|+.|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 5666666666 6665432 357777777776 56677766777777777777777654
No 252
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.01 E-value=0.006 Score=62.74 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhcCC---CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 141 NSTLEKVWRCLGEE---RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 141 ~~~~~~l~~~l~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...++.+.+++... ....+.|+|++|+|||+||+.+++..
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 33444455555431 25688899999999999999999976
No 253
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.99 E-value=0.026 Score=58.92 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=41.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCC---CCCCeEEEEEeCCcccHHHHHHHHHHHhC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTP---NDFDVVIWVVVSKDMQLERIQEKIGERIG 213 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 213 (806)
.-.++.|+|.+|+||||||.+++....... ..-..++|++....++...+.. ++..++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 457999999999999999999988741110 0234789999888777766543 344443
No 254
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.89 E-value=0.0078 Score=57.61 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=33.3
Q ss_pred cchHHHHHHHHHhcC---CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 139 GLNSTLEKVWRCLGE---ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 139 gr~~~~~~l~~~l~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.|++.++++.+.+.. ....+|+|.|+.|+||||+++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 355667777776653 356799999999999999999998765
No 255
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.85 E-value=0.0082 Score=60.35 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=34.0
Q ss_pred CccccchHHHHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGE--ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|.+..+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3578999988888776632 233567799999999999999999876
No 256
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.73 E-value=0.021 Score=59.68 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=53.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC-------CCCHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE-------NRSLEERASGI 227 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~l 227 (806)
.-.++.|.|.+|+||||||.+++.... ..-..++|++....++... +..++... ..+.++..+.+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~---~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHH
Confidence 456899999999999999999987752 1123689999877766432 34444321 23445544444
Q ss_pred HHHh-CCCcEEEEEecCC
Q 037138 228 FKIL-SKKKFLLLLDDVW 244 (806)
Q Consensus 228 ~~~l-~~k~~LlvlDdv~ 244 (806)
.... ..+.-+||+|.+.
T Consensus 134 ~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHTCCSEEEEECGG
T ss_pred HHHHhccCCCEEEEcCHH
Confidence 4333 2445589999874
No 257
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.68 E-value=0.0095 Score=57.36 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcC--CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 142 STLEKVWRCLGE--ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 142 ~~~~~l~~~l~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+..++|.+.+.. ....+|+|+|+.|+|||||++.+....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345556565543 456799999999999999999998876
No 258
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.59 E-value=0.042 Score=58.71 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=23.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+|.++|.+|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998876
No 259
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.55 E-value=0.087 Score=51.27 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=32.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCC--C-CCCCeEEEEEeCCcccH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDT--P-NDFDVVIWVVVSKDMQL 201 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~-~~F~~~~wv~~s~~~~~ 201 (806)
.-.+++|+|++|+|||||++.++...... . ..-..++|+.-...+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 44699999999999999999998754110 0 12346788876554433
No 260
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.53 E-value=0.089 Score=56.27 Aligned_cols=96 Identities=23% Similarity=0.339 Sum_probs=62.3
Q ss_pred HHHHhcC-CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcc-cHHHHHHHHHHHhCCC------C--
Q 037138 147 VWRCLGE-ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDM-QLERIQEKIGERIGLL------E-- 216 (806)
Q Consensus 147 l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~------~-- 216 (806)
.++.+.. .+-.-++|.|.+|+|||+|++.+.+... +.+-+.++++-+.+.. .+.++.+++...-... .
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtv 220 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVA 220 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEE
Confidence 4455533 3456789999999999999999998752 3445677888888765 4567777776653221 1
Q ss_pred ------CCCHHHHHH------HHHHHh---CCCcEEEEEecCC
Q 037138 217 ------NRSLEERAS------GIFKIL---SKKKFLLLLDDVW 244 (806)
Q Consensus 217 ------~~~~~~~~~------~l~~~l---~~k~~LlvlDdv~ 244 (806)
......+.. .+.+++ +++.+|+++||+-
T Consensus 221 vV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 221 LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 222222111 122333 5799999999984
No 261
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.52 E-value=0.054 Score=57.49 Aligned_cols=90 Identities=16% Similarity=0.201 Sum_probs=53.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCC---CCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC-----------CCCH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDT---PNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE-----------NRSL 220 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----------~~~~ 220 (806)
.-.++.|+|++|+|||||+.+++-..... ...-..++|++....+....+. .+++.++... ..+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCCh
Confidence 45699999999999999999876432110 0123568999877766655443 3555554321 2222
Q ss_pred HH---HHHHHHHHh-CCCcEEEEEecCCC
Q 037138 221 EE---RASGIFKIL-SKKKFLLLLDDVWE 245 (806)
Q Consensus 221 ~~---~~~~l~~~l-~~k~~LlvlDdv~~ 245 (806)
.. ....+...+ ..+.-+||+|.+-.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 22 222233333 24567899998743
No 262
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.49 E-value=0.005 Score=73.10 Aligned_cols=45 Identities=24% Similarity=0.426 Sum_probs=36.9
Q ss_pred ccccchHHHHHHHHHhcC---------CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 136 TIVGLNSTLEKVWRCLGE---------ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.++|.+..++.+...+.. .....+.|+|++|+|||++|+.+++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999988888777632 123589999999999999999999876
No 263
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.43 E-value=0.04 Score=57.63 Aligned_cols=152 Identities=11% Similarity=-0.041 Sum_probs=92.5
Q ss_pred HHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 037138 147 VWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASG 226 (806)
Q Consensus 147 l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 226 (806)
+.+.+...-.++..++|+.|.||++.|+.+..... ...|+....+.+....++.++...+- .
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~-~--------------- 70 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIFSLCQ-A--------------- 70 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHHHHHH-H---------------
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHHHHhc-C---------------
Confidence 33444434567899999999999999999988651 22343322223333344444433321 0
Q ss_pred HHHHhCCCcEEEEEecCCC-c--cCcccccccCCC-CCCcEEEEec-C-------C-----------ceecccCChHHHH
Q 037138 227 IFKILSKKKFLLLLDDVWE-R--IDLTKVGIPFPS-KNTSKVVFTT-R-------L-----------IFKVECLRDKEAW 283 (806)
Q Consensus 227 l~~~l~~k~~LlvlDdv~~-~--~~~~~~~~~~~~-~~~s~iivTt-r-------~-----------~~~l~~L~~~e~~ 283 (806)
.-+.+++-++|+|++.. . ..++.+...+.. ..++.+|++| . . .+...+++.++..
T Consensus 71 --~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~ 148 (343)
T 1jr3_D 71 --MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLP 148 (343)
T ss_dssp --HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHH
T ss_pred --cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHH
Confidence 11346677889999865 2 334555544444 4566666554 2 2 6788889988888
Q ss_pred HHHHhhhCCCccCCCCChHHHHHHHHHHhCCchHHHHH
Q 037138 284 ELFLDKVGEETLDSHLDIPKLAHTLAKECGGLPLALIT 321 (806)
Q Consensus 284 ~lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPlai~~ 321 (806)
..+.+.+......-+ .+.+..+++.++|.+.++..
T Consensus 149 ~~l~~~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 149 RWVAARAKQLNLELD---DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHHHHTTCEEC---HHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHHhchHHHHHHH
Confidence 888776632221111 46678888888988876644
No 264
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.41 E-value=0.047 Score=56.53 Aligned_cols=89 Identities=17% Similarity=0.264 Sum_probs=54.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCC-----------CCCC--CeEEEEEeCCcccHHHHHHHHHHHhCCCC-----
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDT-----------PNDF--DVVIWVVVSKDMQLERIQEKIGERIGLLE----- 216 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-----------~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----- 216 (806)
.-.++.|+|.+|+||||+|.+++...... .+.. ..++|++....++..++.+ +++.++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 45799999999999999999998763100 1111 4789999888877776654 344554321
Q ss_pred ------CCCHHH---HHHHHHHHhC--CCcEEEEEecCC
Q 037138 217 ------NRSLEE---RASGIFKILS--KKKFLLLLDDVW 244 (806)
Q Consensus 217 ------~~~~~~---~~~~l~~~l~--~k~~LlvlDdv~ 244 (806)
..+.++ ....+...+. .+.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 223332 2333444443 344578888764
No 265
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.37 E-value=0.012 Score=55.50 Aligned_cols=120 Identities=17% Similarity=0.133 Sum_probs=76.0
Q ss_pred HhhccCCcccEEEccCCCcccc-----cCcccCCCCCCCEEEecCCCcc-----ccChhhhcCCCCcEEecCCCccccc-
Q 037138 498 RFFDFMPSLTVLNLSNNGFLTK-----LRPGISKLVSLQYLNLSKTSIR-----ELPKELKALVNLKYLNLEHSRYLHT- 566 (806)
Q Consensus 498 ~~~~~l~~L~~L~Ls~~~~~~~-----lp~~i~~l~~L~~L~Ls~n~l~-----~lp~~i~~L~~L~~L~L~~~~~l~~- 566 (806)
..+..-+.|+.|+|++|..++. +-..+..-..|+.|+|++|.|. .+-..+..-+.|++|+|++|.+...
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 3455667888888887522321 3445666788999999999887 3445566668899999998874221
Q ss_pred ---cccccccCCCCCcEEEeecccC--CCCCCCCccccCCccchHHHhcCCCCCCeeeEEecchh
Q 037138 567 ---IPRQLICSFSMLHVLRMVNCDY--SGKIPLDSILFGGCESLVEELISLKHLNVLTIALKSFF 626 (806)
Q Consensus 567 ---lp~~~~~~l~~L~~L~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 626 (806)
+-.. +..-+.|++|++++|.. .+. .........+..-+.|..|+++.+...
T Consensus 115 a~ala~a-L~~N~tL~~L~L~n~~~~~ig~--------~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 115 LARLLRS-TLVTQSIVEFKADNQRQSVLGN--------QVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHH-TTTTCCCSEEECCCCSSCCCCH--------HHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHH-HhhCCceeEEECCCCcCcCcCH--------HHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 1122 44456799999986532 111 011234456677788888888766553
No 266
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.34 E-value=0.0063 Score=58.87 Aligned_cols=108 Identities=17% Similarity=-0.035 Sum_probs=60.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE----NRSLEERASGIFKI 230 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~l~~~ 230 (806)
.-.++.|+|..|+||||++..+.++. ..+-..++.+....+.. -...+++.++... .....+..+.+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~---~~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL---EYADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH---HHTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH---HhcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 34688999999999999999988876 22223455554333221 1123444444322 12233444445544
Q ss_pred hCCCcE-EEEEecCCCc--cCcccccccCCCCCCcEEEEecCC
Q 037138 231 LSKKKF-LLLLDDVWER--IDLTKVGIPFPSKNTSKVVFTTRL 270 (806)
Q Consensus 231 l~~k~~-LlvlDdv~~~--~~~~~~~~~~~~~~~s~iivTtr~ 270 (806)
+.+.++ +||+|.+... +.++.+.. +. ..|..||+|.+.
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~-~~gi~Vil~Gl~ 125 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANI-LA-ENGFVVIISGLD 125 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHH-HH-HTTCEEEEECCS
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHH-HH-hCCCeEEEEecc
Confidence 444444 9999999642 22222211 11 237788888885
No 267
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.33 E-value=0.0088 Score=55.46 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=22.2
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+|.|.|++|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999886
No 268
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.31 E-value=0.037 Score=56.24 Aligned_cols=84 Identities=17% Similarity=0.164 Sum_probs=46.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC-cccHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHh
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIGLLE--NRSLEERASGIFKIL 231 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~l~~~l 231 (806)
...+|+|+|++|+||||++..++.......+ ..+..+.... .....+.+....+..+... ..+.......+. .+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LF 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-Hh
Confidence 4579999999999999999999877621111 2455555432 2223333333333333322 223333333333 23
Q ss_pred CCCcEEEEEec
Q 037138 232 SKKKFLLLLDD 242 (806)
Q Consensus 232 ~~k~~LlvlDd 242 (806)
.+.=++|+|-
T Consensus 181 -~~~dlvIiDT 190 (296)
T 2px0_A 181 -SEYDHVFVDT 190 (296)
T ss_dssp -GGSSEEEEEC
T ss_pred -cCCCEEEEeC
Confidence 3445788883
No 269
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.30 E-value=0.0093 Score=55.69 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=22.4
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999986
No 270
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.23 E-value=0.035 Score=58.06 Aligned_cols=89 Identities=22% Similarity=0.306 Sum_probs=52.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCC---CCC-CeEEEEEeCCcccHHHHHHHHHHHhCCCC-----------CCC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTP---NDF-DVVIWVVVSKDMQLERIQEKIGERIGLLE-----------NRS 219 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----------~~~ 219 (806)
.-.++.|+|++|+|||||+.+++... ... +.. ..++|++....+....+ ..+++..+... ..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~-~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-ccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 55799999999999999999998875 111 111 24589987665544333 23444333211 111
Q ss_pred ---HHHHHHHHHHHhC------CCcEEEEEecCCC
Q 037138 220 ---LEERASGIFKILS------KKKFLLLLDDVWE 245 (806)
Q Consensus 220 ---~~~~~~~l~~~l~------~k~~LlvlDdv~~ 245 (806)
..+....+...+. .+.-+||+|.+-.
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 1222333444443 4677999999864
No 271
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.22 E-value=0.029 Score=49.16 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=37.0
Q ss_pred EEEccCCCccc--ccCcccCCCCCCCEEEecCCCccccChh-hhcCCCCcEEecCCCcc
Q 037138 508 VLNLSNNGFLT--KLRPGISKLVSLQYLNLSKTSIRELPKE-LKALVNLKYLNLEHSRY 563 (806)
Q Consensus 508 ~L~Ls~~~~~~--~lp~~i~~l~~L~~L~Ls~n~l~~lp~~-i~~L~~L~~L~L~~~~~ 563 (806)
+++.+++ .+. .+|..+. .+|++|+|++|.|+.+|.. +..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSS-CCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCC-CCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5666766 344 6665433 4678888888888887764 57788888888888753
No 272
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.18 E-value=0.011 Score=68.22 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=55.9
Q ss_pred CccccchHHHHHHHHHhcC-------------CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccH
Q 037138 135 PTIVGLNSTLEKVWRCLGE-------------ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQL 201 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~ 201 (806)
.++.|.++.++++.+.+.- ...+-|-++|++|+|||.+|+++++.. ... ++.++ .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~-----f~~v~----~ 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIK----G 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCE-----EEECC----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCc-----eEEec----c
Confidence 3567888888887765521 134557899999999999999999987 222 23332 1
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCC
Q 037138 202 ERIQEKIGERIGLLENRSLEERASGIFKILSKKKFLLLLDDVWE 245 (806)
Q Consensus 202 ~~~~~~i~~~l~~~~~~~~~~~~~~l~~~l~~k~~LlvlDdv~~ 245 (806)
.+ ++ ......+.....+.....-+..+.+|++|+++.
T Consensus 545 ~~----l~---s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 545 PE----LL---TMWFGESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp HH----HH---TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred ch----hh---ccccchHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 11 11 111133333333333333356789999999864
No 273
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.18 E-value=0.015 Score=60.21 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=52.6
Q ss_pred HHHHhcC-CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCccc-HHHHHHHHHHHhC-CCCCCCHHHH
Q 037138 147 VWRCLGE-ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQ-LERIQEKIGERIG-LLENRSLEER 223 (806)
Q Consensus 147 l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~-~~~~~~~~~~ 223 (806)
+++.+.. ..-..++|+|++|+|||||++.+.+........++ ++++-+.+... +.++.+.+-..+- ..........
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r 242 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRH 242 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHH
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHH
Confidence 4444433 34568999999999999999998875411112333 34566776543 3333222200000 0012222221
Q ss_pred ----------HHHHHHHhCCCcEEEEEecCCC
Q 037138 224 ----------ASGIFKILSKKKFLLLLDDVWE 245 (806)
Q Consensus 224 ----------~~~l~~~l~~k~~LlvlDdv~~ 245 (806)
++.+++ +++.+|+++||+-.
T Consensus 243 ~~~a~~alt~AEyfrd--~G~dVLil~DslTR 272 (422)
T 3ice_A 243 VQVAEMVIEKAKRLVE--HKKDVIILLDSITR 272 (422)
T ss_dssp HHHHHHHHHHHHHHHH--TSCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHh--cCCCEEEEEeCchH
Confidence 222332 68999999999843
No 274
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.17 E-value=0.0096 Score=55.38 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.3
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 543
No 275
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.14 E-value=0.011 Score=55.95 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+|+|+|++|+|||||++.+....
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999998764
No 276
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.11 E-value=0.047 Score=55.70 Aligned_cols=86 Identities=19% Similarity=0.255 Sum_probs=49.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccH--HHHHHHHHHHhCCCC-----CCCHHHH-HHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQL--ERIQEKIGERIGLLE-----NRSLEER-ASG 226 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~-----~~~~~~~-~~~ 226 (806)
...+|+|+|++|+||||++..++.... . .-..+.++... .+.. .+-+...++..+... ..+.... .+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~-~--~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV-D--EGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH-H--TTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH-h--cCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 467999999999999999999998762 1 11235555543 2222 222334455544322 2233222 233
Q ss_pred HHHHhCCCcEEEEEecCC
Q 037138 227 IFKILSKKKFLLLLDDVW 244 (806)
Q Consensus 227 l~~~l~~k~~LlvlDdv~ 244 (806)
+...+....-++|+|-.-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 444454555588889663
No 277
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.11 E-value=0.087 Score=56.59 Aligned_cols=96 Identities=25% Similarity=0.361 Sum_probs=62.6
Q ss_pred HHHHhcC-CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcc-cHHHHHHHHHHHhCCC-------C-
Q 037138 147 VWRCLGE-ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDM-QLERIQEKIGERIGLL-------E- 216 (806)
Q Consensus 147 l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~- 216 (806)
.++.|.. .+-.-++|.|.+|+|||+|++.+.+... +.+-+.++++-+.+.. ...++.+++...-... .
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 3444433 3456789999999999999999998752 3455788888888765 4667777776542221 1
Q ss_pred -------CCCHHHH------HHHHHHHh---CCCcEEEEEecCC
Q 037138 217 -------NRSLEER------ASGIFKIL---SKKKFLLLLDDVW 244 (806)
Q Consensus 217 -------~~~~~~~------~~~l~~~l---~~k~~LlvlDdv~ 244 (806)
......+ .-.+.+++ +++.+|+++||+-
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 2222211 22234454 4689999999984
No 278
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.10 E-value=0.097 Score=56.12 Aligned_cols=86 Identities=20% Similarity=0.347 Sum_probs=51.8
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcc-cHHHHHHHHHHHhCC--------CCCCCHHHHH---
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDM-QLERIQEKIGERIGL--------LENRSLEERA--- 224 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~--------~~~~~~~~~~--- 224 (806)
..++|+|.+|+|||||++.+..... ..+-+.++++-+.+.. ...++.+++...-.. ........+.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~--~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIA--QEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHH--HHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhh--hccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 4689999999999999999988751 1223456777777665 445566555432100 0011111111
Q ss_pred ---HHHHHHh---CCCcEEEEEecCC
Q 037138 225 ---SGIFKIL---SKKKFLLLLDDVW 244 (806)
Q Consensus 225 ---~~l~~~l---~~k~~LlvlDdv~ 244 (806)
-.+.+++ +++++|+++||+-
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 1223332 5899999999984
No 279
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.10 E-value=0.012 Score=56.14 Aligned_cols=26 Identities=38% Similarity=0.332 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+|.|+|++|+||||+|+.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999876
No 280
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.06 E-value=0.012 Score=55.16 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=22.1
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998865
No 281
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.04 E-value=0.011 Score=61.56 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=37.4
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|++..++.+...+..+ .-+.++|++|+|||+||+.+++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 46799999999888877654 367899999999999999999876
No 282
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.01 E-value=0.014 Score=54.61 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=20.7
Q ss_pred eEEEEEccCCCCHHHHHHHHHh
Q 037138 157 GIIGLYGMGGVGKTTLLAQINN 178 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~ 178 (806)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999988
No 283
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.99 E-value=0.02 Score=55.73 Aligned_cols=40 Identities=23% Similarity=0.334 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 141 NSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 141 ~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
++..+.+.+.+......+|+|+|.+|+|||||+..+....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3344455555555678899999999999999999999875
No 284
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.98 E-value=0.02 Score=60.57 Aligned_cols=45 Identities=20% Similarity=0.167 Sum_probs=36.8
Q ss_pred ccccchHHHHHHHHHhc-------------C--CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 136 TIVGLNSTLEKVWRCLG-------------E--ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~-------------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.++|.+..++.+...+. . .....|.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46899999988887772 1 134678999999999999999999986
No 285
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.97 E-value=0.011 Score=54.97 Aligned_cols=24 Identities=33% Similarity=0.366 Sum_probs=22.2
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+|+|+|++|+||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
No 286
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.97 E-value=0.024 Score=58.44 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=32.2
Q ss_pred ccchHHHHHHHHHh----cCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 138 VGLNSTLEKVWRCL----GEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 138 ~gr~~~~~~l~~~l----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
|+.+.-.+++++.+ ..+....|.|+|++|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34455556665555 34567789999999999999999988865
No 287
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.91 E-value=0.014 Score=54.89 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+.|.|+|++|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999876
No 288
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.90 E-value=0.019 Score=62.95 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=37.2
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+.++|++..++.+...+..+ .-|.++|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 35799999998888777544 367899999999999999999976
No 289
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.83 E-value=0.018 Score=55.02 Aligned_cols=28 Identities=29% Similarity=0.536 Sum_probs=24.9
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 153 EERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 153 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.....+|+|+|++|+||||+|+.+....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3556899999999999999999999876
No 290
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.81 E-value=0.024 Score=57.41 Aligned_cols=27 Identities=30% Similarity=0.225 Sum_probs=24.2
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
....+|+|+|..|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998776
No 291
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.81 E-value=0.12 Score=55.08 Aligned_cols=87 Identities=23% Similarity=0.176 Sum_probs=48.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC-cccHHHHHHHHHHHhCCCC-----CCCHHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIGLLE-----NRSLEERASGIF 228 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~l~ 228 (806)
...+|.++|++|+||||++..++.... . .. ..++.++... .....+.+.......+.+. ..+.........
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-~-~G-~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al 172 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-K-RG-YKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGV 172 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH-H-TT-CCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H-cC-CeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHH
Confidence 468999999999999999999988762 2 22 2344555432 1223333444444444422 233333333333
Q ss_pred HHhC-CCcEEEEEecCC
Q 037138 229 KILS-KKKFLLLLDDVW 244 (806)
Q Consensus 229 ~~l~-~k~~LlvlDdv~ 244 (806)
..+. ...=++|+|-..
T Consensus 173 ~~a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 173 DIFVKNKMDIIIVDTAG 189 (433)
T ss_dssp HHTTTTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 3333 334466788664
No 292
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.79 E-value=0.024 Score=60.15 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=35.9
Q ss_pred CccccchHHHHHHHHHhc------------------------------CCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLG------------------------------EERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~------------------------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|.+..++.+...+. ......+.++|++|+|||++|+.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 357888888888776661 0124568899999999999999999876
No 293
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.77 E-value=0.09 Score=56.05 Aligned_cols=85 Identities=20% Similarity=0.194 Sum_probs=47.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH--HHHHHHHHHhCCCC-----CCCHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE--RIQEKIGERIGLLE-----NRSLEERASGI 227 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~-----~~~~~~~~~~l 227 (806)
...+|+|+|.+|+||||++..++.... .. -..+..+.. +.+... +.++......+.+. ..+..+.....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~-~~--g~~Vllvd~-D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~ 172 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK-GK--GRRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRV 172 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH-TT--TCCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-Hc--CCeEEEeec-cccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHH
Confidence 457999999999999999999998872 22 223555554 333332 22344455554432 23444443333
Q ss_pred HHHhCCCcE-EEEEecC
Q 037138 228 FKILSKKKF-LLLLDDV 243 (806)
Q Consensus 228 ~~~l~~k~~-LlvlDdv 243 (806)
.+.++...| ++|+|-.
T Consensus 173 l~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 173 EEKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHHTTCSEEEEECC
T ss_pred HHHHHHCCCCEEEEcCC
Confidence 333422233 6677754
No 294
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.69 E-value=0.018 Score=54.99 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=23.6
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999998875
No 295
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.68 E-value=0.014 Score=55.83 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 296
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.66 E-value=0.021 Score=55.44 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=33.0
Q ss_pred cchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 139 GLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 139 gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+.++..+.+...+......+|+|+|.+|+|||||+..+....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 444555556555555678899999999999999999998875
No 297
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.66 E-value=0.021 Score=53.72 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+|.|.|++|+||||+++.++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999876
No 298
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.65 E-value=0.018 Score=54.49 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=22.3
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+|.|.|++|+||||+|+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999976
No 299
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.64 E-value=0.017 Score=55.27 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.4
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
-.+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998864
No 300
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.63 E-value=0.019 Score=53.34 Aligned_cols=25 Identities=24% Similarity=0.499 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+|+|+|++|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 301
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.60 E-value=0.019 Score=53.59 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 302
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.57 E-value=0.02 Score=54.03 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.9
Q ss_pred eEEEEEccCCCCHHHHHHHHHhh
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNK 179 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~ 179 (806)
.+++|+|++|+||||+++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999864
No 303
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.57 E-value=0.022 Score=53.93 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 304
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.55 E-value=0.02 Score=56.97 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=22.1
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+|.|+|++|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 579999999999999999999876
No 305
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.53 E-value=0.013 Score=61.46 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=34.7
Q ss_pred CccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|.+..++.+..........-+.|+|++|+|||++|+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 3589998876665444433333448899999999999999999876
No 306
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.53 E-value=0.018 Score=53.90 Aligned_cols=25 Identities=44% Similarity=0.441 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+|.|.|++|+||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999876
No 307
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.53 E-value=0.022 Score=54.80 Aligned_cols=26 Identities=35% Similarity=0.326 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999875
No 308
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.52 E-value=0.016 Score=54.60 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.9
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999999765
No 309
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.49 E-value=0.018 Score=53.35 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=19.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQIN 177 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~ 177 (806)
.-.+++|+|+.|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34689999999999999999644
No 310
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.48 E-value=0.019 Score=54.15 Aligned_cols=24 Identities=25% Similarity=0.363 Sum_probs=22.2
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 311
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.46 E-value=0.12 Score=53.01 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=37.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGER 211 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 211 (806)
.-.++.|.|.+|+||||+|.+++.... ... ..++|++.. .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMS-DND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH-TTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 446899999999999999999987762 222 578888765 3456666665544
No 312
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.44 E-value=0.021 Score=56.60 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+..+|+|+|++|+|||||++.+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999765
No 313
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.43 E-value=0.024 Score=54.61 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+|+|+|+.|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998875
No 314
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.42 E-value=0.022 Score=52.54 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999876
No 315
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.41 E-value=0.018 Score=53.56 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=22.0
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..|.|.|++|+||||+|+.+....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999876
No 316
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.40 E-value=0.15 Score=52.47 Aligned_cols=57 Identities=26% Similarity=0.314 Sum_probs=35.8
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC-cccHHHHHHHHHHHhC
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIG 213 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~ 213 (806)
....+++|+|+.|+||||+++.++.... . .. ..+.++.... .....+-+....+.++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~-~-~~-g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK-N-HG-FSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH-H-TT-CCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-h-cC-CEEEEEeecccccchHHHHHHHHHHcC
Confidence 4578999999999999999999988762 1 11 2344444321 1233344445555555
No 317
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.40 E-value=0.024 Score=54.51 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=24.8
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+.++|.|.|++|+||||.|+.++..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999987
No 318
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.39 E-value=0.02 Score=54.90 Aligned_cols=26 Identities=35% Similarity=0.607 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+|.|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999998876
No 319
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.38 E-value=0.026 Score=53.85 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=23.2
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhh
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNK 179 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 179 (806)
....+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999999874
No 320
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.37 E-value=0.024 Score=53.26 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhh
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNK 179 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~ 179 (806)
....|+|+|+.|+||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999887
No 321
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.37 E-value=0.19 Score=53.98 Aligned_cols=87 Identities=18% Similarity=0.213 Sum_probs=47.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC-cccHHHHHHHHHHHhCCCC-----CCCHHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK-DMQLERIQEKIGERIGLLE-----NRSLEERASGIF 228 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~l~ 228 (806)
..++|.++|.+|+||||+|..++.... .... ..++-|+... .....+.+.......+... ..+.........
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~-~~~G-~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l 176 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLR-EKHK-KKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAAL 176 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHH-HTSC-CCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HhcC-CeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHH
Confidence 468999999999999999999998772 1212 2455565432 2233333333444444321 234444433333
Q ss_pred HHhC-CCcEEEEEecC
Q 037138 229 KILS-KKKFLLLLDDV 243 (806)
Q Consensus 229 ~~l~-~k~~LlvlDdv 243 (806)
..++ ..-=++|+|-.
T Consensus 177 ~~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 177 KEAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHhCCCCEEEEECC
Confidence 3333 22236677764
No 322
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.37 E-value=0.027 Score=53.86 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=24.0
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
....+|+|.|+.|+||||+|+.+....
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999875
No 323
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.34 E-value=0.16 Score=51.48 Aligned_cols=85 Identities=19% Similarity=0.156 Sum_probs=49.4
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCc-ccHHHHHHHHHHHhCCCC-----CCCHHHHHHHHHH
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKD-MQLERIQEKIGERIGLLE-----NRSLEERASGIFK 229 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~l~~ 229 (806)
..+|+++|.+|+||||++..++.... ..-..+.++..... ....+.++......+... ..+..+......+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~---~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK---KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH---HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 67999999999999999999988762 11224566664322 223333444455544422 2344444444444
Q ss_pred HhC-CCcEEEEEecC
Q 037138 230 ILS-KKKFLLLLDDV 243 (806)
Q Consensus 230 ~l~-~k~~LlvlDdv 243 (806)
.++ +.-=++++|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 443 23237788864
No 324
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.33 E-value=0.025 Score=53.53 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+|+|.|++|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 325
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.30 E-value=0.023 Score=54.36 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=20.5
Q ss_pred eEEEEEccCCCCHHHHHHHHHh
Q 037138 157 GIIGLYGMGGVGKTTLLAQINN 178 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~ 178 (806)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 326
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.30 E-value=0.025 Score=53.64 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+|+|.|++|+||||+|+.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999876
No 327
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.28 E-value=0.027 Score=54.02 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+|+|+|++|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998764
No 328
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.27 E-value=0.023 Score=54.39 Aligned_cols=25 Identities=36% Similarity=0.307 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998865
No 329
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.26 E-value=0.024 Score=54.15 Aligned_cols=23 Identities=39% Similarity=0.713 Sum_probs=21.7
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999986
No 330
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.25 E-value=0.024 Score=55.32 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=22.2
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998875
No 331
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.25 E-value=0.02 Score=54.51 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.8
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 332
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.23 E-value=0.041 Score=56.41 Aligned_cols=96 Identities=20% Similarity=0.179 Sum_probs=49.7
Q ss_pred ccchHHHHHHHHHh-cC---CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcc-cHHHHHH-HHHHH
Q 037138 138 VGLNSTLEKVWRCL-GE---ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDM-QLERIQE-KIGER 211 (806)
Q Consensus 138 ~gr~~~~~~l~~~l-~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~-~i~~~ 211 (806)
+|....+..+...+ .. ....+|+|.|+.|+||||+|+.+.... .....-..+..+....-+ ....+.. .+...
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll-~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~ 148 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL-SRWPDHPNVEVITTDGFLYSNAKLEKQGLMKR 148 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH-TTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGG
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh-cccCCCCeEEEEeecccccchhhhhhHHHHhh
Confidence 44444444444333 22 356699999999999999999998876 211111234444432211 1121111 01112
Q ss_pred hCCCCCCCHHHHHHHHHHHhCCC
Q 037138 212 IGLLENRSLEERASGIFKILSKK 234 (806)
Q Consensus 212 l~~~~~~~~~~~~~~l~~~l~~k 234 (806)
.+.+...+.+...+.+.....++
T Consensus 149 ~g~P~~~D~~~l~~~L~~L~~g~ 171 (321)
T 3tqc_A 149 KGFPESYDMPSLLRVLNAIKSGQ 171 (321)
T ss_dssp TTSGGGBCHHHHHHHHHHHHTTC
T ss_pred ccCcccccHHHHHHHHHhhhccc
Confidence 23333556666666666655555
No 333
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.22 E-value=0.022 Score=53.34 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.4
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+.|.|+|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998775
No 334
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.17 E-value=0.02 Score=53.73 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.9
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999876
No 335
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.17 E-value=0.027 Score=53.13 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998765
No 336
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.16 E-value=0.026 Score=54.04 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=20.4
Q ss_pred eEEEEEccCCCCHHHHHHHHHh
Q 037138 157 GIIGLYGMGGVGKTTLLAQINN 178 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~ 178 (806)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 337
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.11 E-value=0.03 Score=59.92 Aligned_cols=46 Identities=24% Similarity=0.239 Sum_probs=36.8
Q ss_pred CccccchHHHHHHHHHhcC--------------CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGE--------------ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|.++.++.+...+.. ...+-|.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4578999888888666521 134668899999999999999999986
No 338
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.11 E-value=0.045 Score=55.46 Aligned_cols=26 Identities=31% Similarity=0.253 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998865
No 339
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.06 E-value=0.03 Score=52.57 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=22.0
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..|+|.|++|+||||+|+.+....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998865
No 340
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.05 E-value=0.029 Score=53.36 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+|+|.|++|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 341
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.02 E-value=0.03 Score=57.43 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=29.9
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK 197 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 197 (806)
++.+||+|.|-|||||||.|..+.--.. ..=..+.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA---~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFS---ILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHH---HCCCeEEEEecCC
Confidence 5789999999999999999988877662 1112466666653
No 342
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.01 E-value=0.032 Score=55.73 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999873
No 343
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.01 E-value=0.033 Score=50.66 Aligned_cols=27 Identities=33% Similarity=0.347 Sum_probs=23.7
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..-.+++|+|+.|+|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445699999999999999999998865
No 344
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.01 E-value=0.26 Score=51.01 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=27.3
Q ss_pred HHHHHhcC-CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 146 KVWRCLGE-ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 146 ~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
++++.+.. ..-.-++|+|.+|+|||+|++++.+..
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 45566644 345678999999999999999988864
No 345
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.98 E-value=0.025 Score=52.37 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=22.1
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999876
No 346
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.95 E-value=0.03 Score=53.74 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998876
No 347
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.94 E-value=0.033 Score=52.55 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+|+|.|++|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 348
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.91 E-value=0.035 Score=56.94 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=24.2
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
....+|+|+|+.|+|||||++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 456799999999999999999998876
No 349
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.91 E-value=0.022 Score=53.37 Aligned_cols=25 Identities=32% Similarity=0.402 Sum_probs=18.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999998876
No 350
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.91 E-value=0.04 Score=51.86 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=27.6
Q ss_pred HHHHHHHhcC-CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 144 LEKVWRCLGE-ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 144 ~~~l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+..+..++.. ++...+.|+|++|+||||+|..+++..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444445543 233479999999999999999999886
No 351
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.88 E-value=0.036 Score=53.27 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999987
No 352
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.86 E-value=0.035 Score=50.89 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++++|+|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999999999999999998876
No 353
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.85 E-value=0.13 Score=54.59 Aligned_cols=87 Identities=17% Similarity=0.206 Sum_probs=53.3
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhcCCCC-CCCC-eEEEEEeCCcc-cHHHHHHHHHHHhCCCC--------CCCHHHHH-
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKFLDTP-NDFD-VVIWVVVSKDM-QLERIQEKIGERIGLLE--------NRSLEERA- 224 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~~~~~~~- 224 (806)
.-++|.|..|+|||+|+.++.+.. ... ++-+ .++++-+.+.. .+.++.+++...=.... ......+.
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~-~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQA-TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHC-BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHH-HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 447899999999999999999886 221 1111 56677777654 45667776654311111 22222221
Q ss_pred -----HHHHHHh---CCCcEEEEEecCC
Q 037138 225 -----SGIFKIL---SKKKFLLLLDDVW 244 (806)
Q Consensus 225 -----~~l~~~l---~~k~~LlvlDdv~ 244 (806)
-.+.+++ +++.+|+++||+-
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1233444 3789999999984
No 354
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.84 E-value=0.052 Score=53.55 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=24.1
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.....|+|.|++|+||||+|+.+....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998875
No 355
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.80 E-value=0.037 Score=52.22 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=23.9
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
....+|+|.|+.|+||||+|+.+....
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999998874
No 356
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.78 E-value=0.035 Score=51.09 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999876
No 357
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.78 E-value=0.034 Score=53.00 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+|.|.|++|+||||+|+.+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999999876
No 358
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.77 E-value=0.039 Score=54.51 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=23.6
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
....+|+|.|+.|+|||||++.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999998864
No 359
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.77 E-value=0.16 Score=51.49 Aligned_cols=86 Identities=21% Similarity=0.195 Sum_probs=47.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcc-cHHHHHHHHHHHhCCCC-----CCCHHHHHHH-H
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDM-QLERIQEKIGERIGLLE-----NRSLEERASG-I 227 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~~~~-l 227 (806)
...+++|+|.+|+||||++..++.... ..-..+.++...... .....+.......+... ..+..+.... +
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH---HTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 457999999999999999999998762 111235555543221 11122334444444322 2344444332 3
Q ss_pred HHHhCCCcEEEEEecC
Q 037138 228 FKILSKKKFLLLLDDV 243 (806)
Q Consensus 228 ~~~l~~k~~LlvlDdv 243 (806)
........=++|+|-.
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 3332234457888976
No 360
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.76 E-value=0.028 Score=54.43 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998865
No 361
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.70 E-value=0.035 Score=55.11 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+|+|+|+.|+||||+++.+....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999999775
No 362
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.70 E-value=0.036 Score=54.04 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...|.|.|++|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999875
No 363
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.69 E-value=0.04 Score=54.77 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=23.7
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
....+|+|.|+.|+||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998865
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.63 E-value=0.038 Score=52.25 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999865
No 365
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.62 E-value=0.33 Score=52.94 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=22.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+|+|+|.+|+||||++..++...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998776
No 366
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.56 E-value=0.16 Score=54.49 Aligned_cols=91 Identities=20% Similarity=0.174 Sum_probs=55.5
Q ss_pred HHHHhcC-CCceEEEEEccCCCCHHHHH-HHHHhhcCCCCCCCC-eEEEEEeCCcc-cHHHHHHHHHHHhCCCC------
Q 037138 147 VWRCLGE-ERVGIIGLYGMGGVGKTTLL-AQINNKFLDTPNDFD-VVIWVVVSKDM-QLERIQEKIGERIGLLE------ 216 (806)
Q Consensus 147 l~~~l~~-~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~------ 216 (806)
.++.+.. .+-.-++|.|..|+|||+|| ..+.+.. +-+ .++++-+++.. .+.++.+.+.+.=....
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~-----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~a 226 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR-----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVA 226 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS-----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEE
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc-----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEE
Confidence 3444432 34456889999999999996 5666642 223 46788888765 45667776654322211
Q ss_pred --CCCHHH----------HHHHHHHHhCCCcEEEEEecCC
Q 037138 217 --NRSLEE----------RASGIFKILSKKKFLLLLDDVW 244 (806)
Q Consensus 217 --~~~~~~----------~~~~l~~~l~~k~~LlvlDdv~ 244 (806)
...... .++.+++ +++.+|+++||+-
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dslt 264 (513)
T 3oaa_A 227 TASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDLS 264 (513)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecChH
Confidence 222221 2233333 6899999999984
No 367
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.55 E-value=0.05 Score=54.06 Aligned_cols=26 Identities=35% Similarity=0.354 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999999876
No 368
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.53 E-value=0.039 Score=53.33 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|+|||||++.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45689999999999999999998875
No 369
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.52 E-value=0.042 Score=52.79 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+|+|.|+.|+||||+|+.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 370
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.45 E-value=0.043 Score=53.21 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...|.|.|++|+||||+|+.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999876
No 371
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.45 E-value=0.044 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+|+|.|+.|+||||+|+.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 372
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.44 E-value=0.04 Score=53.17 Aligned_cols=23 Identities=43% Similarity=0.547 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 373
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.42 E-value=0.043 Score=52.98 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.9
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998875
No 374
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.40 E-value=0.045 Score=55.80 Aligned_cols=26 Identities=31% Similarity=0.593 Sum_probs=23.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+|+|+|++|+||||+++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999999876
No 375
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.37 E-value=0.13 Score=64.98 Aligned_cols=82 Identities=17% Similarity=0.157 Sum_probs=57.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCC-------CCCCHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLL-------ENRSLEERASGI 227 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~~~l 227 (806)
..++|-|+|++|+|||+||.++..... ..=..++|+++...++... ++.++.. ...+.++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~---~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 567999999999999999999988762 2234688888887776655 4444421 133445555555
Q ss_pred HHHh-CCCcEEEEEecCC
Q 037138 228 FKIL-SKKKFLLLLDDVW 244 (806)
Q Consensus 228 ~~~l-~~k~~LlvlDdv~ 244 (806)
+... +.+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 5444 3567799999985
No 376
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.35 E-value=0.039 Score=53.57 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
....|.|.|++|+||||+|+.++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999999886
No 377
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.32 E-value=0.046 Score=51.81 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.4
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 378
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.31 E-value=0.038 Score=51.98 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=21.6
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+++|+|+.|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999998876
No 379
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.29 E-value=0.16 Score=48.03 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.|+|=|.-|+||||.++.+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999987
No 380
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.23 E-value=0.052 Score=51.79 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+|+|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998875
No 381
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.19 E-value=0.053 Score=50.55 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.5
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
-.+|+|.|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998865
No 382
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.14 E-value=0.12 Score=58.65 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=37.3
Q ss_pred ccccchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 136 TIVGLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 136 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.++|.+..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 42 ~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred eEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 5799999888888777655 588999999999999999999976
No 383
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.11 E-value=0.026 Score=54.46 Aligned_cols=24 Identities=33% Similarity=0.681 Sum_probs=21.8
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+|+|.|+.|+||||+|+.+....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998876
No 384
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.08 E-value=0.052 Score=53.30 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=23.6
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.. .+++|+|+.|+|||||.+.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999999998865
No 385
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.08 E-value=0.055 Score=54.65 Aligned_cols=25 Identities=28% Similarity=0.651 Sum_probs=22.2
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHh
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINN 178 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~ 178 (806)
....+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999983
No 386
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.07 E-value=0.11 Score=55.86 Aligned_cols=93 Identities=18% Similarity=0.159 Sum_probs=56.0
Q ss_pred HHHHhcC-CCceEEEEEccCCCCHHHHH-HHHHhhcCCCCCCCC-eEEEEEeCCcc-cHHHHHHHHHHHhCCCC------
Q 037138 147 VWRCLGE-ERVGIIGLYGMGGVGKTTLL-AQINNKFLDTPNDFD-VVIWVVVSKDM-QLERIQEKIGERIGLLE------ 216 (806)
Q Consensus 147 l~~~l~~-~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~------ 216 (806)
.++.+.. .+-.-++|.|.+|+|||+|| ..+.+.. .-+ .++++-+.+.. .+.++.+.+...-....
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 3444433 34456899999999999995 5777764 235 34777787765 45666666655322211
Q ss_pred --CCCHHHHH------HHHHHHh--CCCcEEEEEecCC
Q 037138 217 --NRSLEERA------SGIFKIL--SKKKFLLLLDDVW 244 (806)
Q Consensus 217 --~~~~~~~~------~~l~~~l--~~k~~LlvlDdv~ 244 (806)
......+. -.+.+++ +++.+|+++||+-
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 22222111 1223333 6899999999984
No 387
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.03 E-value=0.099 Score=56.23 Aligned_cols=93 Identities=17% Similarity=0.160 Sum_probs=55.4
Q ss_pred HHHHhcC-CCceEEEEEccCCCCHHHHH-HHHHhhcCCCCCCCC-eEEEEEeCCcc-cHHHHHHHHHHHhCCCC------
Q 037138 147 VWRCLGE-ERVGIIGLYGMGGVGKTTLL-AQINNKFLDTPNDFD-VVIWVVVSKDM-QLERIQEKIGERIGLLE------ 216 (806)
Q Consensus 147 l~~~l~~-~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~------ 216 (806)
.++.+.. .+-.-++|.|.+|+|||+|| ..+.+.. .-+ .++++-+.+.. .+.++.+.+...=....
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 3444432 34456899999999999996 4676653 245 35777787765 45666666654321111
Q ss_pred --CCCHHHHH------HHHHHHh--CCCcEEEEEecCC
Q 037138 217 --NRSLEERA------SGIFKIL--SKKKFLLLLDDVW 244 (806)
Q Consensus 217 --~~~~~~~~------~~l~~~l--~~k~~LlvlDdv~ 244 (806)
......+. -.+.+++ +++.+|+++||+-
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 22221111 1222333 6899999999984
No 388
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.03 E-value=0.053 Score=51.80 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.5
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+|.|.|++|+||||.|+.++.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999987
No 389
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.03 E-value=0.059 Score=52.08 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCCHHHHHHHHHh
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINN 178 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~ 178 (806)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 390
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.01 E-value=0.03 Score=51.70 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.2
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+++|+|..|+|||||++.+..-.
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 391
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.00 E-value=0.097 Score=53.64 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=24.1
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
....+|+|+|+.|+|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 455799999999999999999998865
No 392
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.98 E-value=0.05 Score=53.83 Aligned_cols=24 Identities=38% Similarity=0.311 Sum_probs=21.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHh
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINN 178 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~ 178 (806)
.-.+++|+|++|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 446999999999999999999883
No 393
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.97 E-value=0.057 Score=55.53 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=22.4
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+|+|.|+.|+||||||+.++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999876
No 394
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.97 E-value=0.056 Score=51.95 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.8
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
....+|.|.|+.|+||||+|+.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 445789999999999999999998865
No 395
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.96 E-value=0.054 Score=52.65 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+|+|.|++|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 396
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.94 E-value=0.045 Score=54.01 Aligned_cols=25 Identities=32% Similarity=0.306 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
-.+|+|+|+.|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999876
No 397
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.92 E-value=0.048 Score=53.36 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=27.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEE
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWV 193 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv 193 (806)
.-.+++|+|+.|+|||||++.+..-. ....+.+++
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~----~p~~G~I~~ 64 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD----KPTEGEVYI 64 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC----CCCceEEEE
Confidence 44689999999999999999998765 223455555
No 398
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.87 E-value=0.049 Score=52.89 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998765
No 399
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.87 E-value=0.036 Score=54.21 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=16.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHH-hhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQIN-NKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~-~~~ 180 (806)
-.+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 653
No 400
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.86 E-value=0.063 Score=54.71 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+++|+|+.|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999876
No 401
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.77 E-value=0.065 Score=49.57 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.++++|+|+.|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 6789999999999999999998875
No 402
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.75 E-value=0.075 Score=49.95 Aligned_cols=89 Identities=11% Similarity=0.093 Sum_probs=58.5
Q ss_pred cCCCCCCCEEEecCC-Ccc-----ccChhhhcCCCCcEEecCCCccccc----cccccccCCCCCcEEEeecccCCCCCC
Q 037138 524 ISKLVSLQYLNLSKT-SIR-----ELPKELKALVNLKYLNLEHSRYLHT----IPRQLICSFSMLHVLRMVNCDYSGKIP 593 (806)
Q Consensus 524 i~~l~~L~~L~Ls~n-~l~-----~lp~~i~~L~~L~~L~L~~~~~l~~----lp~~~~~~l~~L~~L~l~~~~~~~~~~ 593 (806)
+.+-+.|++|+|++| .|. .+-+.+..-+.|+.|+|++|.+... +.. ++..-+.|++|+|++|.+...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~-aL~~N~tL~~L~L~~N~Ig~~-- 113 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE-LIETSPSLRVLNVESNFLTPE-- 113 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHH-HHHHCSSCCEEECCSSBCCHH--
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHH-HHhcCCccCeEecCCCcCCHH--
Confidence 445678999999885 665 3445566677899999999874211 111 234457789999988877632
Q ss_pred CCccccCCccchHHHhcCCCCCCeeeEEe
Q 037138 594 LDSILFGGCESLVEELISLKHLNVLTIAL 622 (806)
Q Consensus 594 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 622 (806)
+...+...+..-+.|+.|+++.
T Consensus 114 -------Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 114 -------LLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp -------HHHHHHHHTTTTCCCSEEECCC
T ss_pred -------HHHHHHHHHhhCCceeEEECCC
Confidence 2233445666667788888864
No 403
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.71 E-value=0.071 Score=53.84 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+|.|+|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999998865
No 404
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.71 E-value=0.062 Score=51.37 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=21.9
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+|+|.|+.|+||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999999876
No 405
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.67 E-value=0.047 Score=52.23 Aligned_cols=24 Identities=29% Similarity=0.192 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhh
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNK 179 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~ 179 (806)
-.+++|+|+.|+|||||++.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999865
No 406
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.66 E-value=0.24 Score=51.04 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=37.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHh
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERI 212 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 212 (806)
.-.++.|.|.+|+||||+|..++.... . .=..++|++.. .+..++...++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a-~--~g~~Vl~fSlE--ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSAL-N--DDRGVAVFSLE--MSAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH-H--TTCEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-H--cCCeEEEEeCC--CCHHHHHHHHHHHh
Confidence 346899999999999999999988762 1 22357777653 45566666665543
No 407
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.64 E-value=0.12 Score=54.08 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=28.7
Q ss_pred HHHHHHHhc--CCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 144 LEKVWRCLG--EERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 144 ~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++.+.+. ..+..+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 344444443 3578899999999999999999998765
No 408
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.63 E-value=0.067 Score=54.60 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=22.4
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+|.|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999876
No 409
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.59 E-value=0.072 Score=54.54 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+|.|+|+.|+||||||..++...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999999875
No 410
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.58 E-value=0.064 Score=51.84 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=22.1
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..|.|.|++|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999876
No 411
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.50 E-value=0.059 Score=54.04 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34689999999999999999998765
No 412
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.50 E-value=0.059 Score=52.81 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998764
No 413
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.49 E-value=0.067 Score=51.56 Aligned_cols=23 Identities=35% Similarity=0.274 Sum_probs=21.1
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 414
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.44 E-value=0.06 Score=53.64 Aligned_cols=35 Identities=31% Similarity=0.334 Sum_probs=27.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEE
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWV 193 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv 193 (806)
.-.+++|+|+.|+|||||++.++.-. ....+.+++
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~----~p~~G~i~~ 65 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE----KPSEGAIIV 65 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEE
Confidence 45689999999999999999998765 223455555
No 415
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.43 E-value=0.071 Score=51.77 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.3
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 416
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.42 E-value=0.077 Score=51.92 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.8
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...|.|.|+.|+||||+|+.+....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999886
No 417
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.36 E-value=0.1 Score=56.15 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=50.8
Q ss_pred ceEEEEEccCCCCHHHHH-HHHHhhcCCCCCCCC-eEEEEEeCCcc-cHHHHHHHHHHHhCCCC--------CC------
Q 037138 156 VGIIGLYGMGGVGKTTLL-AQINNKFLDTPNDFD-VVIWVVVSKDM-QLERIQEKIGERIGLLE--------NR------ 218 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~~------ 218 (806)
-.-++|.|.+|+|||+|| ..+.+.. . -+ .++++-+.+.. .+.++.+.+...=.... ..
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~---~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ---G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC---T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh---c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 456789999999999995 5776654 1 34 45777787765 35555555543211111 11
Q ss_pred ----CHHHHHHHHHHHhCCCcEEEEEecCC
Q 037138 219 ----SLEERASGIFKILSKKKFLLLLDDVW 244 (806)
Q Consensus 219 ----~~~~~~~~l~~~l~~k~~LlvlDdv~ 244 (806)
..-..++.++. +++.+|+++||+-
T Consensus 238 ~a~~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 238 LAPYTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 11223344444 6999999999974
No 418
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.33 E-value=0.13 Score=55.62 Aligned_cols=26 Identities=35% Similarity=0.577 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+++|+|.+|+|||||++.++...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45799999999999999999998876
No 419
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.29 E-value=0.066 Score=52.63 Aligned_cols=35 Identities=34% Similarity=0.367 Sum_probs=26.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEE
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWV 193 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv 193 (806)
.-.+++|+|+.|+|||||.+.++.-. ....+.+++
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~ 65 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV----RAQKGKIIF 65 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCceEEE
Confidence 34689999999999999999998865 223455555
No 420
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.27 E-value=0.073 Score=52.66 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhh
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNK 179 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~ 179 (806)
.-.+++|+|+.|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999885
No 421
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.26 E-value=0.056 Score=51.93 Aligned_cols=26 Identities=35% Similarity=0.618 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998765
No 422
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.26 E-value=0.15 Score=49.60 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=23.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+|.|.|+.|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999988
No 423
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.26 E-value=0.065 Score=53.50 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44689999999999999999998865
No 424
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.25 E-value=0.11 Score=53.25 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=30.6
Q ss_pred CCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC
Q 037138 153 EERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK 197 (806)
Q Consensus 153 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 197 (806)
....++|+|+|-||+||||+|..++.... .. =..++-|+...
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La-~~--G~~VlliD~D~ 79 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFS-IL--GKRVLQIGCDP 79 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHH-HT--TCCEEEEEESS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHH-HC--CCeEEEEeCCC
Confidence 35678999999999999999999888762 11 22567777654
No 425
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.23 E-value=0.067 Score=53.20 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 426
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.22 E-value=0.067 Score=52.11 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998865
No 427
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.22 E-value=0.067 Score=53.24 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45689999999999999999998765
No 428
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.17 E-value=0.08 Score=49.88 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.8
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..-.|+|+|.+|+|||||++.+....
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998864
No 429
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.16 E-value=0.086 Score=54.91 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+++|+|+.|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 35799999999999999999999876
No 430
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.15 E-value=0.074 Score=52.39 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998765
No 431
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.13 E-value=0.076 Score=53.06 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhh
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNK 179 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~ 179 (806)
.-.+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999885
No 432
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.10 E-value=0.09 Score=53.02 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.4
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+|.|+|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999999875
No 433
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.07 E-value=0.072 Score=52.56 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=27.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEE
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWV 193 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv 193 (806)
.-.+++|+|+.|+|||||++.++.-. ....+.+++
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~I~i 68 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY----IPENGQVLI 68 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEE
Confidence 34689999999999999999998865 223455555
No 434
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=92.04 E-value=0.48 Score=62.07 Aligned_cols=78 Identities=21% Similarity=0.207 Sum_probs=48.3
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HhCCCc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLENRSLEERASGIFK-ILSKKK 235 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~l~~-~l~~k~ 235 (806)
+-|-++|++|+|||++|+.+.... ..+ ..+.++++...+...+++.+-..+....... ..+.. .-.+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~----~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~-----g~~~~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS----SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSK-----GLTLLPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC----SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETT-----TEEEEEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC----CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccC-----CccccCCCCCce
Confidence 466789999999999998777654 122 4566778877777776666655443210000 00000 014678
Q ss_pred EEEEEecCC
Q 037138 236 FLLLLDDVW 244 (806)
Q Consensus 236 ~LlvlDdv~ 244 (806)
.++.+||+.
T Consensus 1338 ~VlFiDEin 1346 (2695)
T 4akg_A 1338 LVLFCDEIN 1346 (2695)
T ss_dssp EEEEEETTT
T ss_pred EEEEecccc
Confidence 899999964
No 435
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.03 E-value=0.073 Score=52.77 Aligned_cols=26 Identities=42% Similarity=0.537 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998765
No 436
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.96 E-value=0.22 Score=52.88 Aligned_cols=88 Identities=16% Similarity=0.207 Sum_probs=52.7
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCC--------CCCC-eEEEEEeCCcc-cHHHHHHHHHHHhCCCC--------C
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTP--------NDFD-VVIWVVVSKDM-QLERIQEKIGERIGLLE--------N 217 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--------~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~--------~ 217 (806)
-.-++|.|.+|+|||+|+.++++.. ... ++-+ .++++-+.+.. .+.++.+++...=.... .
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d 225 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKAD 225 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETT
T ss_pred CCEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCC
Confidence 3467889999999999999999876 221 1222 56677777654 45666666544211110 2
Q ss_pred CCHHHH------HHHHHHHh---CCCcEEEEEecCC
Q 037138 218 RSLEER------ASGIFKIL---SKKKFLLLLDDVW 244 (806)
Q Consensus 218 ~~~~~~------~~~l~~~l---~~k~~LlvlDdv~ 244 (806)
.....+ .-.+.+++ +++.+|+++||+-
T Consensus 226 ~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 226 DPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 221111 11233444 3789999999984
No 437
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.88 E-value=0.078 Score=52.31 Aligned_cols=26 Identities=38% Similarity=0.508 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999998875
No 438
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.87 E-value=0.096 Score=52.11 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=23.5
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 455799999999999999999998754
No 439
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.83 E-value=0.079 Score=52.72 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=26.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEE
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWV 193 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv 193 (806)
.-.+++|+|+.|+|||||++.+..-. . . .+.+++
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~---~-~-~G~I~i 78 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY---D-A-EGDIKI 78 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS---C-C-EEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC---C-C-CeEEEE
Confidence 44689999999999999999998865 2 2 455555
No 440
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.83 E-value=0.056 Score=60.87 Aligned_cols=46 Identities=24% Similarity=0.150 Sum_probs=33.4
Q ss_pred CccccchHHHHHHHHHhcCCCce-----------EEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGEERVG-----------IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~~~~~-----------vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+.++|.+..++.+.-.+..+..+ -|-++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 45678877666665444433211 58899999999999999998875
No 441
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.80 E-value=0.1 Score=51.36 Aligned_cols=40 Identities=25% Similarity=0.201 Sum_probs=29.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK 197 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 197 (806)
.-.++.|.|++|+||||||.+++.... ..=..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~---~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL---KMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEccC
Confidence 346899999999999999988876641 1123678887554
No 442
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.80 E-value=0.08 Score=53.04 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998865
No 443
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.79 E-value=0.09 Score=53.37 Aligned_cols=27 Identities=15% Similarity=0.253 Sum_probs=23.6
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 455799999999999999999998764
No 444
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.71 E-value=0.082 Score=53.15 Aligned_cols=26 Identities=42% Similarity=0.517 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999998865
No 445
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.70 E-value=0.083 Score=52.79 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999998765
No 446
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.69 E-value=0.11 Score=46.98 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.3
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..|.|+|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999998764
No 447
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.67 E-value=0.083 Score=52.30 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998865
No 448
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.65 E-value=0.3 Score=52.22 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=57.4
Q ss_pred HHHhcC-CCceEEEEEccCCCCHHHHHHHHHhhcCCCCC-CCCeEEEEEeCCcc-cHHHHHHHHHHHhCCCC--------
Q 037138 148 WRCLGE-ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPN-DFDVVIWVVVSKDM-QLERIQEKIGERIGLLE-------- 216 (806)
Q Consensus 148 ~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------- 216 (806)
++.+.. .+-.-++|.|.+|+|||+|+.++++....... .=+.++++-+.+.. .+.++.+++...=....
T Consensus 143 ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~ts 222 (469)
T 2c61_A 143 IDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLA 222 (469)
T ss_dssp HHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEET
T ss_pred eeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECC
Confidence 444432 23456778899999999999999998621111 11356777776654 45667777765422111
Q ss_pred CCCHHHHH------HHHHHHh---CCCcEEEEEecCC
Q 037138 217 NRSLEERA------SGIFKIL---SKKKFLLLLDDVW 244 (806)
Q Consensus 217 ~~~~~~~~------~~l~~~l---~~k~~LlvlDdv~ 244 (806)
......+. -.+.+++ +++.+|+++||+-
T Consensus 223 d~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 223 DDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 22222211 1233443 4799999999973
No 449
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.64 E-value=0.052 Score=55.06 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=20.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+..+|+|.|+.|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998864
No 450
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.64 E-value=0.1 Score=47.74 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.9
Q ss_pred eEEEEEccCCCCHHHHHHHHHhh
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNK 179 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~ 179 (806)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999875
No 451
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.60 E-value=0.1 Score=53.35 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=21.3
Q ss_pred eEEEEEccCCCCHHHHHHHHHhh
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNK 179 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~ 179 (806)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999885
No 452
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=91.60 E-value=0.17 Score=54.53 Aligned_cols=97 Identities=14% Similarity=0.146 Sum_probs=56.5
Q ss_pred HHHHhcC-CCceEEEEEccCCCCHHHHH-HHHHhhcCCC----CCCCC-eEEEEEeCCcc-cHHHHHHHHHHHhCCCC--
Q 037138 147 VWRCLGE-ERVGIIGLYGMGGVGKTTLL-AQINNKFLDT----PNDFD-VVIWVVVSKDM-QLERIQEKIGERIGLLE-- 216 (806)
Q Consensus 147 l~~~l~~-~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~----~~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-- 216 (806)
.++.+.. .+-.-++|.|.+|+|||+|| ..+.+.. .. .++-+ .++++-+.+.. .+.++.+.+...=....
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~-~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tv 230 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQK-RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTH-HHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHH-hhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccce
Confidence 3444433 34456889999999999994 5666654 11 12344 47788888765 45666666654321111
Q ss_pred ------CCCHHHHH------HHHHHHh--CCCcEEEEEecCC
Q 037138 217 ------NRSLEERA------SGIFKIL--SKKKFLLLLDDVW 244 (806)
Q Consensus 217 ------~~~~~~~~------~~l~~~l--~~k~~LlvlDdv~ 244 (806)
......+. -.+.+++ +++.+|+++||+-
T Consensus 231 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 231 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 22221111 1222333 6899999999984
No 453
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.58 E-value=0.54 Score=51.22 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=40.5
Q ss_pred HHHHhcC-CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcc-cHHHHHHHH
Q 037138 147 VWRCLGE-ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDM-QLERIQEKI 208 (806)
Q Consensus 147 l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i 208 (806)
+++.|.. .+-.-++|.|..|+|||+|++++.+.. +-+.++++-+.+.. .+.++++++
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4455543 345688999999999999999998874 22578888887653 455555554
No 454
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.57 E-value=0.11 Score=51.81 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=23.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...++.+.|.||+||||++..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999776
No 455
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.57 E-value=0.1 Score=49.44 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.0
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...|+|+|.+|+|||||.+.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998864
No 456
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.47 E-value=0.12 Score=53.15 Aligned_cols=27 Identities=44% Similarity=0.704 Sum_probs=24.0
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
....+|+|+|.+|+||||++..++...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999999998876
No 457
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.47 E-value=0.1 Score=55.97 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=24.1
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999999998765
No 458
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.46 E-value=0.25 Score=50.94 Aligned_cols=50 Identities=24% Similarity=0.269 Sum_probs=36.1
Q ss_pred hcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHH
Q 037138 151 LGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLER 203 (806)
Q Consensus 151 l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~ 203 (806)
+.+...+++.+.|-||+||||+|..++.... ..-..++-|+.....++..
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la---~~g~~vllid~D~~~~l~~ 60 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLA---KVRRSVLLLSTDPAHNLSD 60 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHT---TSSSCEEEEECCSSCHHHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHH---hCCCcEEEEECCCCCChhH
Confidence 3445678889999999999999999998872 2233577777665544443
No 459
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=91.45 E-value=0.22 Score=51.73 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=35.0
Q ss_pred hcCCCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHH
Q 037138 151 LGEERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLE 202 (806)
Q Consensus 151 l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~ 202 (806)
+.+...+++.+.|.||+||||+|..++..... ...=..++-|+.....++.
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~-~~~g~~vllid~D~~~~l~ 63 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLAL-AQPNEQFLLISTDPAHNLS 63 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHH-HCTTSCEEEEECCSSCHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHH-hcCCCeEEEEECCCCCChH
Confidence 34556789999999999999999999887620 0222346667665544443
No 460
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.40 E-value=0.085 Score=49.30 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=19.9
Q ss_pred EEEEEccCCCCHHHHHHHHHhh
Q 037138 158 IIGLYGMGGVGKTTLLAQINNK 179 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~ 179 (806)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
No 461
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.38 E-value=0.57 Score=51.63 Aligned_cols=53 Identities=15% Similarity=0.035 Sum_probs=37.6
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGER 211 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 211 (806)
.-.++.|.|.+|+||||+|.+++.... . .+=..++|++... +..++...++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a-~-~~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWG-T-AMGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHT-T-TSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHH-H-hcCCcEEEEeccC--CHHHHHHHHHHH
Confidence 446889999999999999999998872 1 2123678887654 455666665544
No 462
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.31 E-value=0.11 Score=52.05 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.0
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999865
No 463
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.27 E-value=0.19 Score=58.73 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=37.5
Q ss_pred CccccchHHHHHHHHHhcC---------CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 135 PTIVGLNSTLEKVWRCLGE---------ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 135 ~~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578999999888777632 133579999999999999999999876
No 464
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.25 E-value=0.12 Score=48.40 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=22.1
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
-+.|.|.|+.|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999998764
No 465
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.22 E-value=0.13 Score=50.41 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=23.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999875
No 466
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.21 E-value=0.1 Score=52.58 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.7
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.++.|+|++|+||||||.+++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998754
No 467
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.17 E-value=0.35 Score=61.14 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=57.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC-------CCCHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE-------NRSLEERASGI 227 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~l 227 (806)
.-+++.|+|++|+||||||.+++.... ..-..++|++....++... ++.++... ..+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a---~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 457999999999999999999988872 2224689998877766542 45555431 45566666655
Q ss_pred HHHh-CCCcEEEEEecCCC
Q 037138 228 FKIL-SKKKFLLLLDDVWE 245 (806)
Q Consensus 228 ~~~l-~~k~~LlvlDdv~~ 245 (806)
+... +.+.-+||+|-+..
T Consensus 454 ~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGG
T ss_pred HHHHHhcCCcEEEECCHHH
Confidence 5443 34566999998853
No 468
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.08 E-value=0.13 Score=54.10 Aligned_cols=27 Identities=26% Similarity=0.112 Sum_probs=24.0
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
....+++|+|++|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456799999999999999999999865
No 469
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.06 E-value=0.11 Score=52.88 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|.+|+|||||++.++...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999998876
No 470
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.05 E-value=0.22 Score=46.68 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=22.9
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998764
No 471
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.02 E-value=0.13 Score=48.87 Aligned_cols=42 Identities=24% Similarity=0.162 Sum_probs=22.1
Q ss_pred cchHHHHHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 139 GLNSTLEKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 139 gr~~~~~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
|++...+.+.+.....+.-.|+|+|.+|+|||||+..+.+..
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 334444444444444556678999999999999999998754
No 472
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.98 E-value=0.11 Score=51.70 Aligned_cols=24 Identities=38% Similarity=0.426 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhh
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNK 179 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~ 179 (806)
-.+++|+|+.|+|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999775
No 473
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.92 E-value=0.32 Score=60.67 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=0.0
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHHhCCCC-------CCCHHHHHHHHHH
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGERIGLLE-------NRSLEERASGIFK 229 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-------~~~~~~~~~~l~~ 229 (806)
+++-|.|.+|+||||||.+++... ...=..++|++....++... ++.++... ..+.++..+.++.
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~~---~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~ 455 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH---HHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHH
Q ss_pred Hh-CCCcEEEEEecC
Q 037138 230 IL-SKKKFLLLLDDV 243 (806)
Q Consensus 230 ~l-~~k~~LlvlDdv 243 (806)
.. +.+.-+||+|-+
T Consensus 456 lv~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHHTCCSEEEESCS
T ss_pred HHHhcCCCEEEECCH
No 474
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.89 E-value=0.16 Score=54.00 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=23.3
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhh
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNK 179 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 179 (806)
....+++|+|..|+|||||.+.+...
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 45679999999999999999999884
No 475
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.87 E-value=0.14 Score=47.72 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.4
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhh
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNK 179 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~ 179 (806)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999874
No 476
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.85 E-value=0.15 Score=50.08 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=23.0
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
...|.|.|..|+||||+++.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999886
No 477
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.83 E-value=0.13 Score=46.69 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.6
Q ss_pred EEEEEccCCCCHHHHHHHHHhhc
Q 037138 158 IIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 158 vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998764
No 478
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.83 E-value=0.096 Score=51.08 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=22.3
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhh
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNK 179 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~ 179 (806)
.-.+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998775
No 479
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.78 E-value=0.28 Score=47.72 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=28.3
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEE
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVV 194 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~ 194 (806)
..+|.|.|+.|+||||+++.+..... ...+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~--~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ--QNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH--HTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hcCCCeeeeec
Confidence 46899999999999999999998872 34555344443
No 480
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.70 E-value=0.72 Score=49.85 Aligned_cols=53 Identities=9% Similarity=-0.055 Sum_probs=37.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGER 211 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 211 (806)
.-.++.|.|.+|+||||+|.+++.... . ..-..++|++... +..++...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a-~-~~g~~vl~~slE~--~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAA-L-KEGVGVGIYSLEM--PAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH-H-TTCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-H-hCCCeEEEEECCC--CHHHHHHHHHHH
Confidence 346899999999999999999988762 1 1123577877653 455666665543
No 481
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.68 E-value=0.39 Score=52.11 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=41.0
Q ss_pred HHHHhcC-CCceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCccc-HHHHHHHH
Q 037138 147 VWRCLGE-ERVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQ-LERIQEKI 208 (806)
Q Consensus 147 l~~~l~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i 208 (806)
+++.+.. .+-.-++|.|..|+|||+|++++.+.. +-+.++++-+.+..+ +.++.+.+
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4444433 345678999999999999999998764 225788888887654 55566654
No 482
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.68 E-value=0.38 Score=46.05 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
-..|.|-|+.|+||||+++.+....
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999887
No 483
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.67 E-value=0.14 Score=53.71 Aligned_cols=25 Identities=40% Similarity=0.601 Sum_probs=22.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..+|+|.|+.|+||||||..++...
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3589999999999999999999876
No 484
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.60 E-value=0.14 Score=46.69 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.6
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.--|.|+|.+|+|||||+..+.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998764
No 485
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.58 E-value=0.12 Score=52.17 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=23.0
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44689999999999999999998764
No 486
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.57 E-value=0.13 Score=53.34 Aligned_cols=26 Identities=35% Similarity=0.349 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34689999999999999999999865
No 487
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.54 E-value=1.7 Score=47.12 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=34.5
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHH
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIG 209 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 209 (806)
.-.++.|.|.+|+||||+|..++..... ..-..++|++... +..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCC--CHHHHHHHHH
Confidence 4468999999999999999999887621 1112577776543 3345554443
No 488
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.47 E-value=0.22 Score=48.23 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=19.9
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
-..|.|-|+.|+||||+++.+++..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 489
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.46 E-value=0.21 Score=54.53 Aligned_cols=43 Identities=12% Similarity=-0.013 Sum_probs=32.0
Q ss_pred ccchHHHHHHHHHhc--CCCceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 138 VGLNSTLEKVWRCLG--EERVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 138 ~gr~~~~~~l~~~l~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
+.|.+..+.+.+... .....+|.+.|+.|+||||+|+.+....
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 445544455555442 2355789999999999999999999998
No 490
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.45 E-value=0.14 Score=53.25 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=23.2
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 45689999999999999999998865
No 491
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.33 E-value=0.15 Score=47.39 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.4
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.+.+|+|+.|+|||||+.+++--.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999997754
No 492
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.31 E-value=0.14 Score=47.11 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.2
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
..|+|+|.+|+|||||...+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998753
No 493
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.31 E-value=0.093 Score=53.38 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.1
Q ss_pred CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 155 RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 155 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45689999999999999999998765
No 494
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.29 E-value=0.15 Score=47.76 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.3
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhc
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
-.|.|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998764
No 495
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.29 E-value=0.26 Score=45.91 Aligned_cols=34 Identities=29% Similarity=0.527 Sum_probs=26.5
Q ss_pred HHHHHHhcCCCceEEEEEccCCCCHHHHHHHHHhh
Q 037138 145 EKVWRCLGEERVGIIGLYGMGGVGKTTLLAQINNK 179 (806)
Q Consensus 145 ~~l~~~l~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 179 (806)
.++.+ +.......|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 33455678899999999999999999864
No 496
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.27 E-value=0.18 Score=46.80 Aligned_cols=26 Identities=38% Similarity=0.512 Sum_probs=22.5
Q ss_pred CCceEEEEEccCCCCHHHHHHHHHhh
Q 037138 154 ERVGIIGLYGMGGVGKTTLLAQINNK 179 (806)
Q Consensus 154 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 179 (806)
.....|+|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45667999999999999999998765
No 497
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.27 E-value=0.36 Score=46.19 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=33.0
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCCcccHHHHHHHHHH
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSKDMQLERIQEKIGE 210 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 210 (806)
..|.|-|+.|+||||+++.+.... . ...+..+.+..-.....+.+..++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l-~-~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL-E-QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH-H-HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-H-HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999887 2 234433443333222233444444443
No 498
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.24 E-value=0.14 Score=47.07 Aligned_cols=25 Identities=36% Similarity=0.388 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 156 VGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 156 ~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.--|+|+|.+|+|||||+..+....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3468999999999999999997653
No 499
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.24 E-value=0.29 Score=48.24 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=27.7
Q ss_pred HHHHHHhcCC--CceEEEEEccCCCCHHHHHHHHHhhc
Q 037138 145 EKVWRCLGEE--RVGIIGLYGMGGVGKTTLLAQINNKF 180 (806)
Q Consensus 145 ~~l~~~l~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 180 (806)
.-+..++... ....|.++|++|+|||.+|..+++..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3355555443 35679999999999999999999864
No 500
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.21 E-value=0.29 Score=48.90 Aligned_cols=38 Identities=21% Similarity=0.389 Sum_probs=28.6
Q ss_pred eEEEEEccCCCCHHHHHHHHHhhcCCCCCCCCeEEEEEeCC
Q 037138 157 GIIGLYGMGGVGKTTLLAQINNKFLDTPNDFDVVIWVVVSK 197 (806)
Q Consensus 157 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~~F~~~~wv~~s~ 197 (806)
++|+|.|-||+||||+|..++.... .. -..++-|+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la-~~--G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH-AM--GKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH-TT--TCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH-HC--CCcEEEEcCCC
Confidence 6788899999999999999998872 12 22566676543
Done!