Query 037139
Match_columns 135
No_of_seqs 178 out of 1276
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 09:02:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0333 U5 snRNP-like RNA heli 100.0 6E-28 1.3E-32 183.8 12.0 133 1-134 540-673 (673)
2 KOG0328 Predicted ATP-dependen 99.9 2.9E-27 6.3E-32 169.2 9.9 109 2-110 290-398 (400)
3 KOG0331 ATP-dependent RNA heli 99.9 8.5E-27 1.8E-31 179.3 11.8 114 2-115 365-478 (519)
4 PLN00206 DEAD-box ATP-dependen 99.9 1.2E-26 2.7E-31 181.7 12.2 111 2-112 392-502 (518)
5 PTZ00110 helicase; Provisional 99.9 2.6E-26 5.7E-31 180.7 13.6 114 2-115 401-514 (545)
6 PRK04837 ATP-dependent RNA hel 99.9 5.3E-26 1.1E-30 174.3 10.3 103 2-104 279-381 (423)
7 KOG0330 ATP-dependent RNA heli 99.9 1.1E-25 2.3E-30 166.5 11.1 106 1-106 323-430 (476)
8 COG0513 SrmB Superfamily II DN 99.9 2.3E-25 4.9E-30 174.3 9.8 100 1-100 296-396 (513)
9 KOG0335 ATP-dependent RNA heli 99.9 6E-25 1.3E-29 167.1 11.0 113 1-113 360-472 (482)
10 KOG0336 ATP-dependent RNA heli 99.9 7.6E-25 1.7E-29 163.4 9.5 110 2-111 489-598 (629)
11 PTZ00424 helicase 45; Provisio 99.9 8.9E-25 1.9E-29 166.1 9.8 107 2-108 291-397 (401)
12 PRK10590 ATP-dependent RNA hel 99.9 2E-24 4.3E-29 167.1 10.9 100 2-101 269-368 (456)
13 KOG0326 ATP-dependent RNA heli 99.9 3.1E-25 6.6E-30 161.1 5.7 110 1-110 345-454 (459)
14 PRK11776 ATP-dependent RNA hel 99.9 2.6E-24 5.7E-29 166.5 11.1 100 2-101 266-365 (460)
15 PRK01297 ATP-dependent RNA hel 99.9 4.1E-24 8.9E-29 166.0 12.1 105 2-106 359-464 (475)
16 KOG0340 ATP-dependent RNA heli 99.9 2E-24 4.3E-29 158.3 9.5 107 1-107 277-383 (442)
17 PRK11192 ATP-dependent RNA hel 99.9 4.7E-24 1E-28 163.9 11.3 100 2-101 269-368 (434)
18 PRK04537 ATP-dependent RNA hel 99.9 6E-24 1.3E-28 168.1 10.9 100 2-101 281-380 (572)
19 KOG0341 DEAD-box protein abstr 99.9 4.8E-24 1E-28 158.4 9.4 111 2-112 445-556 (610)
20 KOG0344 ATP-dependent RNA heli 99.9 1.4E-23 3.1E-28 161.4 11.1 111 2-112 412-522 (593)
21 TIGR00614 recQ_fam ATP-depende 99.9 1.3E-23 2.8E-28 163.1 10.9 93 1-93 249-341 (470)
22 PRK11634 ATP-dependent RNA hel 99.9 2E-23 4.3E-28 166.4 11.1 100 1-100 268-367 (629)
23 PLN03137 ATP-dependent DNA hel 99.9 1.5E-23 3.3E-28 172.4 10.4 90 1-90 703-792 (1195)
24 KOG0332 ATP-dependent RNA heli 99.9 5.5E-23 1.2E-27 151.7 11.2 110 2-111 354-471 (477)
25 PF00271 Helicase_C: Helicase 99.9 4.7E-23 1E-27 123.5 7.9 73 1-73 6-78 (78)
26 PRK11057 ATP-dependent DNA hel 99.9 7.2E-23 1.6E-27 163.1 11.0 90 1-90 259-348 (607)
27 TIGR03817 DECH_helic helicase/ 99.9 1.4E-22 3E-27 164.2 9.2 99 2-100 303-403 (742)
28 TIGR01389 recQ ATP-dependent D 99.9 4.1E-22 8.9E-27 158.4 10.3 89 1-89 247-335 (591)
29 COG0514 RecQ Superfamily II DN 99.9 9.2E-22 2E-26 153.9 11.3 94 2-95 254-347 (590)
30 KOG0338 ATP-dependent RNA heli 99.9 2.3E-22 4.9E-27 153.3 7.6 96 1-96 449-544 (691)
31 KOG0342 ATP-dependent RNA heli 99.9 2.5E-22 5.3E-27 152.1 7.5 95 2-96 354-448 (543)
32 KOG0345 ATP-dependent RNA heli 99.9 8.1E-22 1.8E-26 148.9 8.4 90 2-91 281-370 (567)
33 KOG0348 ATP-dependent RNA heli 99.9 2.6E-21 5.7E-26 148.1 9.5 96 2-97 471-566 (708)
34 KOG0327 Translation initiation 99.8 3.1E-21 6.7E-26 142.5 8.3 110 1-110 286-395 (397)
35 KOG0350 DEAD-box ATP-dependent 99.8 6.3E-21 1.4E-25 145.0 7.4 98 2-99 457-554 (620)
36 TIGR00643 recG ATP-dependent D 99.8 5.3E-20 1.2E-24 147.2 13.1 82 2-83 482-564 (630)
37 KOG0343 RNA Helicase [RNA proc 99.8 1.8E-20 4E-25 144.1 8.9 94 2-95 339-433 (758)
38 PRK10917 ATP-dependent DNA hel 99.8 7.3E-20 1.6E-24 147.5 12.5 83 2-84 505-588 (681)
39 TIGR00580 mfd transcription-re 99.8 4.5E-19 9.8E-24 146.0 14.4 84 2-85 686-770 (926)
40 PRK04914 ATP-dependent helicas 99.8 2.4E-19 5.3E-24 147.5 11.5 98 2-99 518-617 (956)
41 KOG0347 RNA helicase [RNA proc 99.8 3.3E-20 7.1E-25 142.6 5.6 101 1-101 486-586 (731)
42 KOG0339 ATP-dependent RNA heli 99.8 2.5E-19 5.5E-24 136.9 9.9 121 1-121 491-613 (731)
43 smart00490 HELICc helicase sup 99.8 3E-19 6.5E-24 106.9 8.3 72 2-73 11-82 (82)
44 PRK13767 ATP-dependent helicas 99.8 5.3E-19 1.1E-23 145.7 11.0 82 2-83 314-396 (876)
45 COG1111 MPH1 ERCC4-like helica 99.8 6.7E-19 1.4E-23 134.3 10.2 78 10-88 407-484 (542)
46 PRK02362 ski2-like helicase; P 99.8 8.6E-19 1.9E-23 142.5 10.5 83 3-85 304-397 (737)
47 PRK10689 transcription-repair 99.8 4.9E-18 1.1E-22 142.4 15.1 84 2-85 835-919 (1147)
48 PRK05298 excinuclease ABC subu 99.8 4.8E-18 1E-22 136.4 12.0 115 1-116 469-597 (652)
49 PRK09751 putative ATP-dependen 99.8 3.1E-18 6.7E-23 145.3 10.9 78 5-82 304-382 (1490)
50 KOG0334 RNA helicase [RNA proc 99.8 2.5E-18 5.4E-23 139.5 9.8 111 2-112 637-747 (997)
51 cd00079 HELICc Helicase superf 99.8 3.9E-18 8.5E-23 110.5 8.1 79 2-80 52-130 (131)
52 TIGR00631 uvrb excinuclease AB 99.7 1.5E-17 3.2E-22 133.3 11.6 110 2-112 466-589 (655)
53 TIGR01970 DEAH_box_HrpB ATP-de 99.7 3.6E-18 7.8E-23 139.4 6.4 84 2-86 236-337 (819)
54 KOG4284 DEAD box protein [Tran 99.7 1.4E-17 3.1E-22 130.3 9.3 87 1-87 295-381 (980)
55 KOG0346 RNA helicase [RNA proc 99.7 6.3E-18 1.4E-22 127.3 6.6 100 1-100 291-425 (569)
56 PRK00254 ski2-like helicase; P 99.7 1.5E-17 3.2E-22 135.0 8.5 84 3-86 296-389 (720)
57 KOG0351 ATP-dependent DNA heli 99.7 1.2E-17 2.7E-22 136.9 7.3 89 2-90 509-597 (941)
58 PRK01172 ski2-like helicase; P 99.7 3.8E-17 8.3E-22 131.8 8.9 96 3-101 286-392 (674)
59 PHA02653 RNA helicase NPH-II; 99.7 4.2E-17 9E-22 130.8 8.3 83 2-87 421-516 (675)
60 KOG0354 DEAD-box like helicase 99.7 1.2E-16 2.6E-21 127.3 9.7 76 10-87 456-531 (746)
61 PRK09200 preprotein translocas 99.7 9E-17 1.9E-21 130.1 8.5 85 1-87 451-543 (790)
62 COG1200 RecG RecG-like helicas 99.7 3E-16 6.4E-21 123.7 10.7 99 2-100 507-606 (677)
63 PRK11664 ATP-dependent RNA hel 99.7 4E-17 8.7E-22 133.4 5.5 85 2-87 239-341 (812)
64 PRK12898 secA preprotein trans 99.7 1.8E-16 3.9E-21 126.1 8.9 85 1-87 496-588 (656)
65 PRK13766 Hef nuclease; Provisi 99.7 8E-16 1.7E-20 125.7 12.2 84 2-86 389-480 (773)
66 PHA02558 uvsW UvsW helicase; P 99.7 4.3E-16 9.4E-21 122.0 9.3 74 2-75 368-442 (501)
67 TIGR01587 cas3_core CRISPR-ass 99.7 2.7E-16 5.8E-21 118.2 7.3 81 4-87 250-338 (358)
68 TIGR00603 rad25 DNA repair hel 99.6 1.8E-15 3.9E-20 121.8 10.9 85 5-89 518-611 (732)
69 KOG0352 ATP-dependent DNA heli 99.6 6.4E-16 1.4E-20 116.5 6.7 92 1-92 278-369 (641)
70 KOG0349 Putative DEAD-box RNA 99.6 1.2E-15 2.5E-20 115.5 6.9 83 2-84 532-614 (725)
71 COG1201 Lhr Lhr-like helicases 99.6 5.5E-15 1.2E-19 119.8 9.9 82 3-84 279-361 (814)
72 TIGR03714 secA2 accessory Sec 99.6 3.3E-15 7.1E-20 120.4 8.4 84 1-87 447-539 (762)
73 TIGR00963 secA preprotein tran 99.6 1.1E-14 2.3E-19 117.1 9.4 85 1-87 428-519 (745)
74 PRK11131 ATP-dependent RNA hel 99.5 6.9E-15 1.5E-19 123.7 6.0 80 4-86 315-412 (1294)
75 PRK12906 secA preprotein trans 99.5 2.3E-14 5E-19 115.9 8.2 85 1-87 463-555 (796)
76 TIGR01967 DEAH_box_HrpA ATP-de 99.5 2E-14 4.3E-19 121.2 6.3 83 2-87 306-406 (1283)
77 KOG0337 ATP-dependent RNA heli 99.5 5.1E-15 1.1E-19 111.2 2.1 100 2-101 285-384 (529)
78 COG1197 Mfd Transcription-repa 99.5 1.3E-13 2.8E-18 114.1 10.1 83 3-85 830-913 (1139)
79 TIGR00595 priA primosomal prot 99.5 1.5E-13 3.2E-18 107.8 9.2 84 2-85 284-381 (505)
80 COG1204 Superfamily II helicas 99.5 7.5E-14 1.6E-18 113.5 7.5 80 4-83 316-406 (766)
81 PRK05580 primosome assembly pr 99.5 2E-13 4.4E-18 110.3 9.8 85 2-86 452-550 (679)
82 TIGR02621 cas3_GSU0051 CRISPR- 99.5 1.4E-13 3.1E-18 112.1 7.9 74 6-82 298-388 (844)
83 PRK12900 secA preprotein trans 99.4 3.2E-13 6.9E-18 110.8 7.0 84 2-87 622-713 (1025)
84 COG1202 Superfamily II helicas 99.4 1.9E-13 4.1E-18 106.4 4.8 85 1-85 463-553 (830)
85 KOG0329 ATP-dependent RNA heli 99.4 9.6E-14 2.1E-18 99.0 2.2 78 32-109 302-380 (387)
86 KOG0353 ATP-dependent DNA heli 99.4 3.2E-13 6.9E-18 101.2 3.4 87 1-87 340-469 (695)
87 COG0556 UvrB Helicase subunit 99.4 7.3E-12 1.6E-16 96.9 10.3 116 1-117 469-598 (663)
88 COG1061 SSL2 DNA or RNA helica 99.3 8.6E-12 1.9E-16 96.6 9.7 67 5-71 309-375 (442)
89 PRK09401 reverse gyrase; Revie 99.3 4.8E-12 1E-16 107.1 8.6 52 1-57 354-410 (1176)
90 PLN03142 Probable chromatin-re 99.3 1.6E-11 3.4E-16 102.4 11.4 85 1-85 510-599 (1033)
91 KOG0953 Mitochondrial RNA heli 99.3 4.7E-12 1E-16 98.2 7.7 96 3-103 382-491 (700)
92 KOG0950 DNA polymerase theta/e 99.3 3.7E-12 8E-17 103.5 7.3 103 3-108 523-631 (1008)
93 TIGR03158 cas3_cyano CRISPR-as 99.3 4.7E-12 1E-16 95.6 6.0 60 2-70 298-357 (357)
94 KOG0947 Cytoplasmic exosomal R 99.2 2E-11 4.4E-16 99.4 7.3 82 4-85 632-723 (1248)
95 TIGR01054 rgy reverse gyrase. 99.2 2.5E-11 5.5E-16 102.8 8.1 53 1-57 352-409 (1171)
96 PRK09694 helicase Cas3; Provis 99.2 2.4E-10 5.2E-15 94.4 13.5 69 3-74 588-664 (878)
97 PRK14701 reverse gyrase; Provi 99.2 6.6E-12 1.4E-16 108.6 4.4 74 1-79 356-450 (1638)
98 KOG0951 RNA helicase BRR2, DEA 99.2 4.5E-11 9.8E-16 99.6 7.6 83 2-84 607-701 (1674)
99 KOG4150 Predicted ATP-dependen 99.2 7.3E-11 1.6E-15 92.4 6.4 119 6-124 561-683 (1034)
100 KOG0948 Nuclear exosomal RNA h 99.2 1.8E-11 3.8E-16 97.9 3.0 103 4-108 448-560 (1041)
101 COG4098 comFA Superfamily II D 99.1 3.4E-10 7.4E-15 83.9 9.2 89 4-94 333-425 (441)
102 COG1205 Distinct helicase fami 99.1 8.5E-11 1.8E-15 97.0 6.4 81 3-83 339-420 (851)
103 KOG0952 DNA/RNA helicase MER3/ 99.1 2.4E-10 5.1E-15 94.0 7.2 111 4-118 398-520 (1230)
104 PRK11448 hsdR type I restricti 99.1 8.2E-10 1.8E-14 93.4 9.2 67 4-72 733-800 (1123)
105 KOG0949 Predicted helicase, DE 99.0 8.7E-10 1.9E-14 90.4 8.0 80 5-84 965-1047(1330)
106 KOG0922 DEAH-box RNA helicase 99.0 1.5E-10 3.3E-15 91.4 2.8 82 5-87 293-392 (674)
107 COG4581 Superfamily II RNA hel 99.0 7.1E-10 1.5E-14 92.0 6.8 100 5-105 447-556 (1041)
108 COG1643 HrpA HrpA-like helicas 99.0 2.9E-10 6.3E-15 93.2 4.2 82 3-85 288-387 (845)
109 PRK12904 preprotein translocas 99.0 3.3E-09 7.1E-14 86.9 9.0 85 1-87 453-575 (830)
110 PRK13104 secA preprotein trans 99.0 3.7E-09 8E-14 86.9 8.6 85 1-87 467-589 (896)
111 KOG0390 DNA repair protein, SN 99.0 9.2E-09 2E-13 83.5 10.7 87 1-87 618-709 (776)
112 KOG0924 mRNA splicing factor A 98.9 4.3E-10 9.3E-15 89.5 2.6 83 2-85 597-697 (1042)
113 PRK13107 preprotein translocas 98.9 3.6E-09 7.9E-14 86.8 7.9 85 1-87 472-593 (908)
114 KOG0923 mRNA splicing factor A 98.9 1.1E-09 2.3E-14 87.0 4.2 81 3-84 507-605 (902)
115 COG1198 PriA Primosomal protei 98.9 1.9E-08 4.2E-13 81.6 9.4 85 3-87 507-605 (730)
116 KOG0920 ATP-dependent RNA heli 98.9 3.1E-10 6.8E-15 93.2 -0.7 84 3-87 445-546 (924)
117 KOG0926 DEAH-box RNA helicase 98.8 1.3E-09 2.9E-14 87.9 1.5 82 3-85 605-704 (1172)
118 COG1203 CRISPR-associated heli 98.6 1.6E-07 3.4E-12 77.1 8.0 79 4-85 466-550 (733)
119 KOG0385 Chromatin remodeling c 98.4 2E-06 4.4E-11 69.7 9.4 85 1-85 510-599 (971)
120 KOG0387 Transcription-coupled 98.3 3.1E-06 6.8E-11 68.7 8.7 84 2-85 571-658 (923)
121 KOG0384 Chromodomain-helicase 98.3 2.9E-06 6.4E-11 71.5 7.6 85 1-85 722-811 (1373)
122 COG0553 HepA Superfamily II DN 98.1 2.7E-05 5.8E-10 64.5 10.1 84 2-85 735-822 (866)
123 PRK12903 secA preprotein trans 98.1 1E-05 2.2E-10 66.8 7.1 83 2-87 450-541 (925)
124 PRK12326 preprotein translocas 98.0 2.6E-05 5.6E-10 63.5 8.1 83 2-87 451-549 (764)
125 KOG1123 RNA polymerase II tran 98.0 3.6E-05 7.7E-10 60.3 8.2 88 6-93 566-661 (776)
126 KOG0392 SNF2 family DNA-depend 98.0 1.8E-05 3.9E-10 67.0 6.8 79 7-85 1372-1454(1549)
127 COG4889 Predicted helicase [Ge 98.0 1.2E-05 2.6E-10 66.5 5.5 81 2-82 497-585 (1518)
128 PRK12899 secA preprotein trans 97.9 4.6E-05 9.9E-10 63.6 7.5 83 2-87 592-683 (970)
129 KOG1002 Nucleotide excision re 97.9 8.4E-05 1.8E-09 58.3 8.4 86 1-86 661-750 (791)
130 TIGR00348 hsdR type I site-spe 97.9 0.00016 3.5E-09 59.0 10.0 54 18-72 580-634 (667)
131 PRK12901 secA preprotein trans 97.8 4.3E-05 9.4E-10 64.2 6.3 59 29-87 677-743 (1112)
132 PF13871 Helicase_C_4: Helicas 97.7 0.00044 9.4E-09 50.7 9.1 80 18-97 51-142 (278)
133 KOG0388 SNF2 family DNA-depend 97.7 0.00032 7E-09 57.2 8.5 85 1-85 1067-1154(1185)
134 KOG4439 RNA polymerase II tran 97.6 0.00057 1.2E-08 55.5 9.5 80 2-81 770-852 (901)
135 PRK13103 secA preprotein trans 97.6 0.00013 2.9E-09 60.7 6.1 59 29-87 498-593 (913)
136 TIGR01407 dinG_rel DnaQ family 97.6 0.0003 6.5E-09 59.0 8.3 69 15-83 712-812 (850)
137 KOG0925 mRNA splicing factor A 97.6 5.7E-05 1.2E-09 59.0 3.3 78 3-85 287-387 (699)
138 PF13307 Helicase_C_2: Helicas 97.6 0.00049 1.1E-08 46.7 7.2 70 14-83 45-148 (167)
139 smart00492 HELICc3 helicase su 97.5 0.0012 2.7E-08 43.7 8.8 50 8-57 27-79 (141)
140 KOG0389 SNF2 family DNA-depend 97.4 0.0011 2.4E-08 54.5 8.4 86 1-86 800-889 (941)
141 smart00491 HELICc2 helicase su 97.3 0.0019 4.2E-08 42.8 7.7 44 14-57 30-80 (142)
142 KOG0391 SNF2 family DNA-depend 97.2 0.0037 8E-08 53.7 9.7 84 2-85 1300-1387(1958)
143 KOG1000 Chromatin remodeling p 97.1 0.002 4.4E-08 50.7 6.4 75 2-76 516-592 (689)
144 KOG0386 Chromatin remodeling c 97.0 0.0028 6.2E-08 53.3 7.4 81 3-83 751-834 (1157)
145 KOG1015 Transcription regulato 97.0 0.0019 4.1E-08 54.4 6.3 83 2-84 1188-1276(1567)
146 PRK08074 bifunctional ATP-depe 97.0 0.0026 5.6E-08 54.0 7.3 47 11-57 787-835 (928)
147 CHL00122 secA preprotein trans 97.0 0.0055 1.2E-07 51.2 8.3 32 56-87 602-633 (870)
148 COG4096 HsdR Type I site-speci 96.9 0.0022 4.7E-08 53.1 5.5 66 5-72 458-525 (875)
149 PF10593 Z1: Z1 domain; Inter 96.8 0.0056 1.2E-07 44.1 6.3 110 2-120 110-224 (239)
150 PRK14873 primosome assembly pr 96.8 0.0089 1.9E-07 49.0 8.1 61 19-85 463-539 (665)
151 COG1110 Reverse gyrase [DNA re 96.8 0.002 4.2E-08 54.4 4.3 52 1-57 361-417 (1187)
152 TIGR02562 cas3_yersinia CRISPR 96.7 0.0049 1.1E-07 52.5 6.1 68 4-74 788-881 (1110)
153 COG1199 DinG Rad3-related DNA 96.6 0.0079 1.7E-07 49.1 7.0 67 14-80 513-613 (654)
154 PF06862 DUF1253: Protein of u 96.6 0.032 6.9E-07 43.7 9.9 92 2-93 324-423 (442)
155 PRK07246 bifunctional ATP-depe 96.5 0.016 3.4E-07 48.7 7.9 67 17-84 683-782 (820)
156 PRK11747 dinG ATP-dependent DN 96.5 0.016 3.5E-07 47.8 7.9 42 16-57 569-616 (697)
157 KOG0701 dsRNA-specific nucleas 96.4 0.00098 2.1E-08 58.6 0.2 56 17-72 343-398 (1606)
158 PRK10917 ATP-dependent DNA hel 96.1 0.014 3.1E-07 48.0 5.5 52 2-53 338-390 (681)
159 COG1200 RecG RecG-like helicas 95.6 0.03 6.4E-07 45.7 5.3 52 1-52 338-390 (677)
160 TIGR00643 recG ATP-dependent D 95.6 0.026 5.6E-07 46.1 5.1 52 2-53 312-364 (630)
161 TIGR00604 rad3 DNA repair heli 95.5 0.092 2E-06 43.5 8.1 43 15-57 565-615 (705)
162 PRK14873 primosome assembly pr 95.4 0.057 1.2E-06 44.4 6.6 51 3-54 215-265 (665)
163 PRK05580 primosome assembly pr 95.3 0.058 1.3E-06 44.5 6.2 52 2-54 215-266 (679)
164 KOG1016 Predicted DNA helicase 95.2 0.054 1.2E-06 45.3 5.6 81 8-88 767-850 (1387)
165 TIGR00595 priA primosomal prot 95.2 0.052 1.1E-06 43.3 5.5 52 2-54 50-101 (505)
166 COG1110 Reverse gyrase [DNA re 95.1 0.026 5.6E-07 48.0 3.7 31 8-38 161-191 (1187)
167 PRK12902 secA preprotein trans 95.1 0.12 2.6E-06 43.8 7.4 25 63-87 666-690 (939)
168 COG1198 PriA Primosomal protei 95.0 0.034 7.5E-07 46.0 4.1 50 1-51 269-318 (730)
169 TIGR00596 rad1 DNA repair prot 94.9 0.14 3.1E-06 43.1 7.5 50 33-85 431-514 (814)
170 KOG0951 RNA helicase BRR2, DEA 94.9 0.076 1.7E-06 46.4 5.8 77 9-89 1412-1498(1674)
171 TIGR03117 cas_csf4 CRISPR-asso 94.8 0.32 6.9E-06 40.0 9.2 67 7-75 499-604 (636)
172 KOG1513 Nuclear helicase MOP-3 94.8 0.09 1.9E-06 44.1 5.9 79 21-99 850-940 (1300)
173 KOG0921 Dosage compensation co 94.7 0.0059 1.3E-07 51.2 -0.9 80 3-83 675-772 (1282)
174 TIGR00580 mfd transcription-re 93.7 0.13 2.9E-06 43.9 5.0 51 2-52 528-579 (926)
175 COG1197 Mfd Transcription-repa 92.7 0.29 6.2E-06 42.5 5.5 50 2-51 671-721 (1139)
176 COG0653 SecA Preprotein transl 92.7 0.14 3E-06 42.9 3.6 56 30-85 479-545 (822)
177 PRK10689 transcription-repair 92.6 0.24 5.2E-06 43.3 5.0 51 2-52 677-728 (1147)
178 PRK14701 reverse gyrase; Provi 88.9 0.85 1.8E-05 41.5 5.1 36 2-37 152-187 (1638)
179 KOG1001 Helicase-like transcri 88.4 0.045 9.7E-07 45.1 -2.8 76 2-77 563-640 (674)
180 PRK15483 type III restriction- 88.2 2.1 4.6E-05 36.9 6.7 73 28-100 501-583 (986)
181 COG0610 Type I site-specific r 88.2 2.5 5.4E-05 36.6 7.2 65 18-83 581-651 (962)
182 KOG0339 ATP-dependent RNA heli 87.2 3.8 8.3E-05 33.1 7.1 47 2-52 324-376 (731)
183 COG3587 Restriction endonuclea 85.7 2 4.3E-05 36.5 5.2 72 28-99 483-567 (985)
184 COG0513 SrmB Superfamily II DN 85.3 1.7 3.8E-05 34.8 4.6 46 2-51 128-179 (513)
185 TIGR01389 recQ ATP-dependent D 84.6 12 0.00026 30.5 9.2 37 1-37 76-112 (591)
186 TIGR01054 rgy reverse gyrase. 84.6 1.5 3.2E-05 38.8 4.2 48 5-52 155-205 (1171)
187 COG0514 RecQ Superfamily II DN 83.4 1.7 3.6E-05 35.5 3.7 36 1-36 80-115 (590)
188 KOG1133 Helicase of the DEAD s 82.9 7.7 0.00017 32.5 7.2 88 18-115 673-800 (821)
189 KOG0331 ATP-dependent RNA heli 75.8 16 0.00034 29.6 6.9 66 2-71 193-272 (519)
190 KOG2340 Uncharacterized conser 73.9 11 0.00024 30.7 5.6 80 14-93 588-676 (698)
191 TIGR00614 recQ_fam ATP-depende 73.9 8.1 0.00018 30.5 5.0 36 1-36 74-109 (470)
192 PRK12898 secA preprotein trans 73.2 13 0.00028 30.9 6.1 44 1-51 171-214 (656)
193 KOG0298 DEAD box-containing he 70.6 3.3 7.1E-05 36.7 2.2 55 19-75 1259-1314(1394)
194 PF10657 RC-P840_PscD: Photosy 68.4 7.6 0.00016 25.1 3.0 37 18-54 64-106 (144)
195 PF02399 Herpes_ori_bp: Origin 66.7 19 0.00041 30.8 5.7 76 3-85 307-388 (824)
196 PLN03137 ATP-dependent DNA hel 66.4 14 0.0003 32.9 5.0 36 1-36 523-560 (1195)
197 PRK13103 secA preprotein trans 66.0 11 0.00023 32.6 4.2 31 1-37 150-180 (913)
198 PRK11776 ATP-dependent RNA hel 65.9 9.6 0.00021 29.9 3.8 49 2-54 101-155 (460)
199 TIGR00963 secA preprotein tran 65.7 11 0.00025 31.7 4.3 31 1-37 124-154 (745)
200 PRK11192 ATP-dependent RNA hel 64.5 18 0.00039 28.1 5.1 49 2-54 101-155 (434)
201 PRK11057 ATP-dependent DNA hel 62.5 18 0.00039 29.7 4.9 36 1-36 88-123 (607)
202 PRK04537 ATP-dependent RNA hel 60.7 13 0.00028 30.3 3.8 47 2-52 112-165 (572)
203 cd01294 DHOase Dihydroorotase 60.5 13 0.00027 28.0 3.5 27 13-39 219-245 (335)
204 KOG0347 RNA helicase [RNA proc 60.5 12 0.00026 30.7 3.4 47 2-52 291-346 (731)
205 PRK13104 secA preprotein trans 60.5 16 0.00034 31.6 4.3 31 1-37 150-180 (896)
206 KOG0351 ATP-dependent DNA heli 60.2 13 0.00028 32.4 3.7 36 1-36 327-364 (941)
207 KOG1131 RNA polymerase II tran 59.9 35 0.00075 28.1 5.8 57 27-84 589-679 (755)
208 PRK10590 ATP-dependent RNA hel 56.6 31 0.00067 27.1 5.2 48 2-53 103-156 (456)
209 PRK12904 preprotein translocas 56.6 16 0.00034 31.4 3.6 37 1-44 149-185 (830)
210 PRK11634 ATP-dependent RNA hel 56.1 19 0.0004 29.9 4.0 47 2-52 103-155 (629)
211 cd00268 DEADc DEAD-box helicas 52.3 71 0.0015 21.6 7.8 49 2-54 97-151 (203)
212 PRK04837 ATP-dependent RNA hel 50.0 43 0.00093 26.0 5.0 48 2-53 111-164 (423)
213 PRK05451 dihydroorotase; Provi 49.9 24 0.00051 26.8 3.4 28 12-39 224-251 (345)
214 KOG0389 SNF2 family DNA-depend 49.1 32 0.0007 29.5 4.2 36 3-40 474-511 (941)
215 COG1111 MPH1 ERCC4-like helica 47.0 21 0.00047 28.8 2.8 49 4-57 88-142 (542)
216 PHA03371 circ protein; Provisi 45.5 23 0.00049 25.5 2.5 46 37-82 29-88 (240)
217 TIGR00856 pyrC_dimer dihydroor 44.0 34 0.00073 26.0 3.5 29 12-40 221-249 (341)
218 KOG0701 dsRNA-specific nucleas 43.6 7.2 0.00016 35.6 -0.2 56 15-70 708-763 (1606)
219 KOG0327 Translation initiation 43.6 32 0.00068 26.8 3.2 74 21-95 115-188 (397)
220 PRK09200 preprotein translocas 42.2 34 0.00073 29.3 3.5 30 1-36 146-176 (790)
221 PRK12899 secA preprotein trans 39.7 50 0.0011 28.9 4.1 31 1-37 162-192 (970)
222 PTZ00110 helicase; Provisional 38.9 54 0.0012 26.6 4.1 48 2-53 231-284 (545)
223 PF14824 Sirohm_synth_M: Siroh 38.4 22 0.00048 17.0 1.1 12 25-36 1-12 (30)
224 TIGR01873 cas_CT1978 CRISPR-as 38.1 78 0.0017 19.2 3.8 52 3-54 24-83 (87)
225 PRK09401 reverse gyrase; Revie 37.9 61 0.0013 29.1 4.5 46 7-52 158-207 (1176)
226 PF00270 DEAD: DEAD/DEAH box h 36.8 81 0.0018 20.3 4.2 47 2-52 72-125 (169)
227 PF02142 MGS: MGS-like domain 36.6 22 0.00047 21.4 1.2 21 17-37 49-69 (95)
228 PF09707 Cas_Cas2CT1978: CRISP 34.8 89 0.0019 18.9 3.6 51 3-54 24-82 (86)
229 KOG0343 RNA Helicase [RNA proc 34.7 1.8E+02 0.0039 24.3 6.2 30 2-36 169-198 (758)
230 PRK12900 secA preprotein trans 34.7 45 0.00098 29.4 3.1 40 1-47 206-245 (1025)
231 COG0478 RIO-like serine/threon 34.7 24 0.00052 26.4 1.4 21 28-48 230-250 (304)
232 PRK12326 preprotein translocas 34.4 60 0.0013 27.7 3.7 37 1-44 146-182 (764)
233 KOG0373 Serine/threonine speci 33.9 18 0.0004 26.1 0.6 15 4-18 158-172 (306)
234 PRK12902 secA preprotein trans 33.7 55 0.0012 28.6 3.4 37 1-44 153-189 (939)
235 PF14475 Mso1_Sec1_bdg: Sec1-b 33.0 56 0.0012 16.9 2.2 23 86-108 19-41 (41)
236 cd01422 MGS Methylglyoxal synt 32.5 61 0.0013 20.4 2.8 21 17-37 59-79 (115)
237 TIGR00696 wecB_tagA_cpsF bacte 32.3 1.4E+02 0.0029 20.5 4.7 30 3-32 75-104 (177)
238 KOG0385 Chromatin remodeling c 32.2 84 0.0018 27.2 4.2 33 2-36 242-275 (971)
239 smart00851 MGS MGS-like domain 32.2 54 0.0012 19.4 2.5 19 18-36 45-63 (90)
240 PRK01297 ATP-dependent RNA hel 31.6 97 0.0021 24.5 4.4 48 2-52 190-243 (475)
241 smart00493 TOPRIM topoisomeras 31.5 99 0.0022 17.2 4.1 37 4-41 24-60 (76)
242 PRK09751 putative ATP-dependen 31.3 82 0.0018 29.2 4.2 48 2-53 77-131 (1490)
243 cd01542 PBP1_TreR_like Ligand- 30.8 1.6E+02 0.0034 20.4 5.1 36 1-36 28-63 (259)
244 KOG0336 ATP-dependent RNA heli 30.5 68 0.0015 25.7 3.2 28 63-90 547-574 (629)
245 COG1201 Lhr Lhr-like helicases 29.2 29 0.00062 29.8 1.1 48 1-52 100-155 (814)
246 PRK12906 secA preprotein trans 29.1 76 0.0016 27.3 3.5 37 1-44 148-184 (796)
247 PF07517 SecA_DEAD: SecA DEAD- 28.7 1E+02 0.0022 22.7 3.8 30 1-36 145-174 (266)
248 COG1568 Predicted methyltransf 28.4 2.7E+02 0.0058 21.2 6.3 63 50-112 224-290 (354)
249 PF09010 AsiA: Anti-Sigma Fact 27.9 26 0.00057 21.3 0.5 19 10-28 60-78 (91)
250 PRK13767 ATP-dependent helicas 27.8 82 0.0018 27.3 3.6 47 2-52 124-178 (876)
251 PRK06827 phosphoribosylpyropho 27.3 1E+02 0.0023 24.0 3.8 35 3-38 295-329 (382)
252 PRK07369 dihydroorotase; Provi 27.1 81 0.0018 24.6 3.2 27 12-39 284-310 (418)
253 TIGR00282 metallophosphoestera 27.0 1.4E+02 0.003 22.0 4.2 32 3-36 146-177 (266)
254 COG0353 RecR Recombinational D 26.9 91 0.002 22.0 3.1 36 6-41 105-149 (198)
255 PRK01395 V-type ATP synthase s 26.0 92 0.002 19.4 2.8 38 2-42 22-59 (104)
256 PRK01221 putative deoxyhypusin 25.9 1.1E+02 0.0024 23.2 3.6 33 5-37 58-91 (312)
257 PRK13107 preprotein translocas 25.8 85 0.0018 27.4 3.3 37 1-44 150-186 (908)
258 PF07835 COX4_pro_2: Bacterial 25.1 78 0.0017 16.5 2.0 17 10-26 7-23 (44)
259 PF14617 CMS1: U3-containing 9 25.1 1.2E+02 0.0025 22.3 3.5 47 21-67 170-234 (252)
260 TIGR03236 dnd_assoc_1 dnd syst 24.5 35 0.00076 26.3 0.8 74 60-134 279-359 (363)
261 TIGR01101 V_ATP_synt_F vacuola 24.0 1.6E+02 0.0034 18.8 3.6 34 6-39 37-71 (115)
262 PLN02599 dihydroorotase 23.9 1.2E+02 0.0025 23.5 3.5 29 12-40 243-271 (364)
263 PRK12903 secA preprotein trans 22.8 73 0.0016 27.8 2.3 37 1-44 146-182 (925)
264 cd06270 PBP1_GalS_like Ligand 22.8 2.5E+02 0.0054 19.5 4.9 36 1-36 28-63 (268)
265 PF10141 ssDNA-exonuc_C: Singl 22.8 2.7E+02 0.0058 19.3 6.2 56 41-100 46-110 (195)
266 KOG0372 Serine/threonine speci 22.5 46 0.00099 24.6 1.0 14 4-17 155-168 (303)
267 PRK13766 Hef nuclease; Provisi 22.5 1.8E+02 0.0039 24.6 4.7 48 4-56 88-141 (773)
268 PRK01211 dihydroorotase; Provi 22.4 1.1E+02 0.0025 23.8 3.2 27 12-39 252-278 (409)
269 COG1212 KdsB CMP-2-keto-3-deox 22.3 1.2E+02 0.0025 22.1 3.0 33 14-46 200-233 (247)
270 PF03808 Glyco_tran_WecB: Glyc 22.1 2E+02 0.0043 19.3 4.1 26 7-32 80-105 (172)
271 PRK05234 mgsA methylglyoxal sy 21.6 1.3E+02 0.0027 19.9 2.9 19 18-36 65-83 (142)
272 KOG0386 Chromatin remodeling c 21.6 1.2E+02 0.0025 27.1 3.3 32 5-36 470-501 (1157)
273 cd01423 MGS_CPS_I_III Methylgl 21.2 1.1E+02 0.0024 19.0 2.5 19 18-36 61-79 (116)
274 TIGR00321 dhys deoxyhypusine s 21.0 1.8E+02 0.004 21.9 3.9 33 5-37 49-82 (301)
275 cd01575 PBP1_GntR Ligand-bindi 20.8 2.6E+02 0.0055 19.3 4.6 35 1-35 28-62 (268)
276 COG1099 Predicted metal-depend 20.7 1.8E+02 0.0039 21.2 3.6 41 2-46 181-221 (254)
277 PRK01189 V-type ATP synthase s 20.6 1.3E+02 0.0029 18.7 2.7 29 14-42 31-59 (104)
278 cd06267 PBP1_LacI_sugar_bindin 20.5 2.9E+02 0.0063 18.8 5.0 39 1-39 28-66 (264)
279 PF01861 DUF43: Protein of unk 20.3 3.6E+02 0.0077 19.7 6.1 50 50-99 115-168 (243)
No 1
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.95 E-value=6e-28 Score=183.77 Aligned_cols=133 Identities=64% Similarity=0.952 Sum_probs=124.9
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
.|+.+..+||+-++++|+.+++.|++|..+||||||++++|+|+|+|++|||||++++..+|.||+||+||.|+.|.+++
T Consensus 540 ~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiS 619 (673)
T KOG0333|consen 540 AGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAIS 619 (673)
T ss_pred ccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCChhHHHHHHHHHh-hCCCCCChHHHHHHHhhCCCCCCCCCCCCCCCcccc
Q 037139 81 FLTFHDTDVFYDLKQMLI-QSNSPVPPELAKHEASKFKPGTIPDRPPRRNDTVFA 134 (135)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (135)
|+++.+...++.|+..+. ....-.|..+..+....+++..+.... +.++.||+
T Consensus 620 flt~~dt~v~ydLkq~l~es~~s~~P~Ela~h~~a~~K~~~~~~k~-~~~e~i~~ 673 (673)
T KOG0333|consen 620 FLTPADTAVFYDLKQALRESVKSHCPPELANHPDAQFKPGTIKAKK-REPETIRY 673 (673)
T ss_pred EeccchhHHHHHHHHHHHHhhhccCChhhccChhhccccccccccc-cCcccccC
Confidence 999999999988888776 678889999999999999999999888 66777763
No 2
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.9e-27 Score=169.21 Aligned_cols=109 Identities=39% Similarity=0.725 Sum_probs=105.2
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
+|.|.+.||+|++++|.+++..|++|+.+||++||+.++|+|+|.|++|||||+|.+.+.|+||+||+||.|+.|.++.|
T Consensus 290 nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainF 369 (400)
T KOG0328|consen 290 NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF 369 (400)
T ss_pred CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCCCCCChHHHH
Q 037139 82 LTFHDTDVFYDLKQMLIQSNSPVPPELAK 110 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 110 (135)
+...+...++.++++++....++|-.+.+
T Consensus 370 Vk~~d~~~lrdieq~yst~i~emp~nvad 398 (400)
T KOG0328|consen 370 VKSDDLRILRDIEQYYSTQIDEMPMNVAD 398 (400)
T ss_pred ecHHHHHHHHHHHHHHhhhcccccchhhh
Confidence 99999999999999999999999887654
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=8.5e-27 Score=179.32 Aligned_cols=114 Identities=49% Similarity=0.821 Sum_probs=108.9
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+.+|||+.++.+|+.+++.|++|+..||||||++++|+|+|+|++|||||+|.++++|+||+||+||.|+.|.+++|
T Consensus 365 ~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tf 444 (519)
T KOG0331|consen 365 GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITF 444 (519)
T ss_pred CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCCCCCChHHHHHHHhh
Q 037139 82 LTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASK 115 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 115 (135)
+...+......+.+.+....+.+|+.+.......
T Consensus 445 ft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~ 478 (519)
T KOG0331|consen 445 FTSDNAKLARELIKVLREAGQTVPPDLLEYARVS 478 (519)
T ss_pred EeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhc
Confidence 9999999999999999999999999998765443
No 4
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.94 E-value=1.2e-26 Score=181.69 Aligned_cols=111 Identities=38% Similarity=0.662 Sum_probs=106.6
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++++|..++++|++|+++|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|..|.+++|
T Consensus 392 g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f 471 (518)
T PLN00206 392 GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVF 471 (518)
T ss_pred CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEE
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCCCCCChHHHHHH
Q 037139 82 LTFHDTDVFYDLKQMLIQSNSPVPPELAKHE 112 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 112 (135)
+...+...+..+.+.++.....+|++|...-
T Consensus 472 ~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~ 502 (518)
T PLN00206 472 VNEEDRNLFPELVALLKSSGAAIPRELANSR 502 (518)
T ss_pred EchhHHHHHHHHHHHHHHcCCCCCHHHHhCh
Confidence 9999999999999999999999999998643
No 5
>PTZ00110 helicase; Provisional
Probab=99.94 E-value=2.6e-26 Score=180.71 Aligned_cols=114 Identities=46% Similarity=0.770 Sum_probs=109.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++++|..++++|++|+++|||||+++++|+|+|+|++||+||+|.+..+|+||+||+||.|..|.+++|
T Consensus 401 g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~ 480 (545)
T PTZ00110 401 GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTF 480 (545)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEE
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCCCCCChHHHHHHHhh
Q 037139 82 LTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASK 115 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 115 (135)
+++.+......+.+.+....+++|++|.++....
T Consensus 481 ~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~ 514 (545)
T PTZ00110 481 LTPDKYRLARDLVKVLREAKQPVPPELEKLSNER 514 (545)
T ss_pred ECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHh
Confidence 9999999999999999999999999999875443
No 6
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=5.3e-26 Score=174.31 Aligned_cols=103 Identities=41% Similarity=0.596 Sum_probs=96.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++++|..++++|++|+++|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|+.|.+++|
T Consensus 279 g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~ 358 (423)
T PRK04837 279 GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISL 358 (423)
T ss_pred CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEE
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCCCCC
Q 037139 82 LTFHDTDVFYDLKQMLIQSNSPV 104 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~ 104 (135)
+.+.+...+..+++++.....+.
T Consensus 359 ~~~~~~~~~~~i~~~~~~~~~~~ 381 (423)
T PRK04837 359 ACEEYALNLPAIETYIGHSIPVS 381 (423)
T ss_pred eCHHHHHHHHHHHHHhCCCCCCc
Confidence 99988888888888887765443
No 7
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.1e-25 Score=166.52 Aligned_cols=106 Identities=41% Similarity=0.658 Sum_probs=100.4
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
+|+.+..+||.|++..|..++++|++|..+||+|||++++|+|+|.|++|||||.|.+..+|+||+||++|.|.+|.++.
T Consensus 323 lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~It 402 (476)
T KOG0330|consen 323 LGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAIT 402 (476)
T ss_pred cCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCChhHHHHHHHHHhhCCCC--CCh
Q 037139 81 FLTFHDTDVFYDLKQMLIQSNSP--VPP 106 (135)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~--~~~ 106 (135)
+++..|.+.+..++..+.+...+ +++
T Consensus 403 lVtqyDve~~qrIE~~~gkkl~~~~~~~ 430 (476)
T KOG0330|consen 403 LVTQYDVELVQRIEHALGKKLPEYKVDK 430 (476)
T ss_pred EEehhhhHHHHHHHHHHhcCCCccCcch
Confidence 99999999999999998887654 444
No 8
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2.3e-25 Score=174.28 Aligned_cols=100 Identities=51% Similarity=0.840 Sum_probs=95.3
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
+|+++..+||+|++++|.++++.|++|+.+||||||++++|+|+|++++|||||+|.+.+.|+||+||+||.|..|.+++
T Consensus 296 ~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~ 375 (513)
T COG0513 296 RGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAIS 375 (513)
T ss_pred CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecC-ChhHHHHHHHHHhhC
Q 037139 81 FLTFH-DTDVFYDLKQMLIQS 100 (135)
Q Consensus 81 ~~~~~-~~~~~~~~~~~~~~~ 100 (135)
|+.+. +...+..+++.+...
T Consensus 376 fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 376 FVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred EeCcHHHHHHHHHHHHHHhcc
Confidence 99986 888888888887665
No 9
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=6e-25 Score=167.13 Aligned_cols=113 Identities=46% Similarity=0.783 Sum_probs=108.5
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
.|+++..+||..++.+|.+.++.|++|++.+||||+++++|+|+|+|.+||+||+|.+..+|+||+||+||.|+.|.+..
T Consensus 360 ~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~ats 439 (482)
T KOG0335|consen 360 NGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATS 439 (482)
T ss_pred CCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEE
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCChhHHHHHHHHHhhCCCCCChHHHHHHH
Q 037139 81 FLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEA 113 (135)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 113 (135)
|++..+.+..+.|.+.+....+++|+||.....
T Consensus 440 f~n~~~~~i~~~L~~~l~ea~q~vP~wl~~~~~ 472 (482)
T KOG0335|consen 440 FFNEKNQNIAKALVEILTEANQEVPQWLSELSR 472 (482)
T ss_pred EeccccchhHHHHHHHHHHhcccCcHHHHhhhh
Confidence 999999999999999999999999999998433
No 10
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=7.6e-25 Score=163.44 Aligned_cols=110 Identities=48% Similarity=0.840 Sum_probs=107.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+.++||+-++.+|+..+++|++|+++|||+||++++|+|+|++.+|+|||.|.+++.|+||+||+||.|+.|..++|
T Consensus 489 gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~ 568 (629)
T KOG0336|consen 489 GISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISF 568 (629)
T ss_pred ccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEE
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCCCCCChHHHHH
Q 037139 82 LTFHDTDVFYDLKQMLIQSNSPVPPELAKH 111 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 111 (135)
++..+......+.+.++...+++|+.|..+
T Consensus 569 lt~~D~~~a~eLI~ILe~aeQevPdeL~~m 598 (629)
T KOG0336|consen 569 LTRNDWSMAEELIQILERAEQEVPDELVRM 598 (629)
T ss_pred EehhhHHHHHHHHHHHHHhhhhCcHHHHHH
Confidence 999999999999999999999999998764
No 11
>PTZ00424 helicase 45; Provisional
Probab=99.92 E-value=8.9e-25 Score=166.10 Aligned_cols=107 Identities=37% Similarity=0.691 Sum_probs=100.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++++|..++++|++|+++|||||+++++|+|+|++++||++|+|.+...|+||+||+||.|..|.++++
T Consensus 291 ~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l 370 (401)
T PTZ00424 291 DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINF 370 (401)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCCCCCChHH
Q 037139 82 LTFHDTDVFYDLKQMLIQSNSPVPPEL 108 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l 108 (135)
+.+.+...+..+++.+.....+.+...
T Consensus 371 ~~~~~~~~~~~~e~~~~~~~~~~~~~~ 397 (401)
T PTZ00424 371 VTPDDIEQLKEIERHYNTQIEEMPMEV 397 (401)
T ss_pred EcHHHHHHHHHHHHHHCCcccccCcch
Confidence 999999999999988888777666543
No 12
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.91 E-value=2e-24 Score=167.06 Aligned_cols=100 Identities=42% Similarity=0.733 Sum_probs=95.2
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++++|.+++++|++|+++|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|..|.++++
T Consensus 269 g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l 348 (456)
T PRK10590 269 GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSL 348 (456)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCC
Q 037139 82 LTFHDTDVFYDLKQMLIQSN 101 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~ 101 (135)
+...+...++.+++.+....
T Consensus 349 ~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 349 VCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred ecHHHHHHHHHHHHHhcCCC
Confidence 99999888898988876654
No 13
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=3.1e-25 Score=161.14 Aligned_cols=110 Identities=41% Similarity=0.684 Sum_probs=106.6
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
+|+++.++|+.|.++.|..++..|++|.++.|||||.+.+|+|++.+++|||||.|++.++|+||+||+||.|..|.++.
T Consensus 345 lGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAIn 424 (459)
T KOG0326|consen 345 LGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAIN 424 (459)
T ss_pred ccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCChhHHHHHHHHHhhCCCCCChHHHH
Q 037139 81 FLTFHDTDVFYDLKQMLIQSNSPVPPELAK 110 (135)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 110 (135)
+++..+...+..+++.+..+..++|+.++.
T Consensus 425 Lityedrf~L~~IE~eLGtEI~pip~~iDk 454 (459)
T KOG0326|consen 425 LITYEDRFNLYRIEQELGTEIKPIPSNIDK 454 (459)
T ss_pred EEehhhhhhHHHHHHHhccccccCCCcCCc
Confidence 999999999999999999999999987764
No 14
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.91 E-value=2.6e-24 Score=166.47 Aligned_cols=100 Identities=38% Similarity=0.607 Sum_probs=94.5
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++++|+.++++|++|+++|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|..|.++++
T Consensus 266 ~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l 345 (460)
T PRK11776 266 GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSL 345 (460)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCC
Q 037139 82 LTFHDTDVFYDLKQMLIQSN 101 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~ 101 (135)
+.+.+...+..+++.+....
T Consensus 346 ~~~~e~~~~~~i~~~~~~~~ 365 (460)
T PRK11776 346 VAPEEMQRANAIEDYLGRKL 365 (460)
T ss_pred EchhHHHHHHHHHHHhCCCC
Confidence 99988888888888776543
No 15
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.91 E-value=4.1e-24 Score=166.03 Aligned_cols=105 Identities=44% Similarity=0.735 Sum_probs=97.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++++|.++++.|++|+++|||||+++++|+|+|++++||++|+|.+..+|+||+||+||.|..|.++++
T Consensus 359 ~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~ 438 (475)
T PRK01297 359 GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISF 438 (475)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEE
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCC-CCCCh
Q 037139 82 LTFHDTDVFYDLKQMLIQSN-SPVPP 106 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~~~~~ 106 (135)
+...|...+..+++++.... .++|+
T Consensus 439 ~~~~d~~~~~~~~~~~~~~~~~~~~~ 464 (475)
T PRK01297 439 AGEDDAFQLPEIEELLGRKISCEMPP 464 (475)
T ss_pred ecHHHHHHHHHHHHHhCCCCcccCCc
Confidence 99888888889988887774 44443
No 16
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=2e-24 Score=158.33 Aligned_cols=107 Identities=36% Similarity=0.602 Sum_probs=100.8
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
+++++.++|+.|++++|...+.+|+++.++||||||++++|+|+|.|++|+|+|.|.++.+|+||+||+.|.|+.|.+++
T Consensus 277 le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiS 356 (442)
T KOG0340|consen 277 LEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAIS 356 (442)
T ss_pred hceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEE
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCChhHHHHHHHHHhhCCCCCChH
Q 037139 81 FLTFHDTDVFYDLKQMLIQSNSPVPPE 107 (135)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (135)
++...|.+.+..+++...+...+.+..
T Consensus 357 ivt~rDv~l~~aiE~~igkKl~e~~~~ 383 (442)
T KOG0340|consen 357 IVTQRDVELLQAIEEEIGKKLTEYNKV 383 (442)
T ss_pred EechhhHHHHHHHHHHHhccccccccc
Confidence 999999999999999888877665443
No 17
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.91 E-value=4.7e-24 Score=163.95 Aligned_cols=100 Identities=44% Similarity=0.703 Sum_probs=94.6
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++.+|..++++|++|+++|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|..|.++++
T Consensus 269 ~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l 348 (434)
T PRK11192 269 GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISL 348 (434)
T ss_pred CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCC
Q 037139 82 LTFHDTDVFYDLKQMLIQSN 101 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~ 101 (135)
+...+...+..+++++....
T Consensus 349 ~~~~d~~~~~~i~~~~~~~~ 368 (434)
T PRK11192 349 VEAHDHLLLGKIERYIEEPL 368 (434)
T ss_pred ecHHHHHHHHHHHHHHhccc
Confidence 99988888888888776543
No 18
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.91 E-value=6e-24 Score=168.10 Aligned_cols=100 Identities=42% Similarity=0.612 Sum_probs=94.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++.+|+.++++|++|+++|||||+++++|+|+|++++||+||+|.+...|+||+||+||.|..|.+++|
T Consensus 281 g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~ 360 (572)
T PRK04537 281 GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF 360 (572)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCC
Q 037139 82 LTFHDTDVFYDLKQMLIQSN 101 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~ 101 (135)
+.+.+...+..+++.+....
T Consensus 361 ~~~~~~~~l~~i~~~~~~~~ 380 (572)
T PRK04537 361 ACERYAMSLPDIEAYIEQKI 380 (572)
T ss_pred ecHHHHHHHHHHHHHHcCCC
Confidence 99888888888888776654
No 19
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.91 E-value=4.8e-24 Score=158.38 Aligned_cols=111 Identities=54% Similarity=0.934 Sum_probs=104.9
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+.++++|...++.|+.|+-+|||+||+++.|+|||++.+|||||+|..+++|+||+||+||.|+.|.+.+|
T Consensus 445 GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTf 524 (610)
T KOG0341|consen 445 GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTF 524 (610)
T ss_pred cceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeee
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecC-ChhHHHHHHHHHhhCCCCCChHHHHHH
Q 037139 82 LTFH-DTDVFYDLKQMLIQSNSPVPPELAKHE 112 (135)
Q Consensus 82 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~ 112 (135)
++.. +...+..++.++....+++|+.|+.+.
T Consensus 525 INK~~~esvLlDLK~LL~EakQ~vP~~L~~L~ 556 (610)
T KOG0341|consen 525 INKNQEESVLLDLKHLLQEAKQEVPPVLAELA 556 (610)
T ss_pred ecccchHHHHHHHHHHHHHhhccCCHHHHHhC
Confidence 9865 566778899999999999999998653
No 20
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=1.4e-23 Score=161.36 Aligned_cols=111 Identities=41% Similarity=0.644 Sum_probs=107.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
++.+.++||+.++.+|.+++++|+.|++.+||||+++++|+|+.++++|||||.|.+..+|+||+||+||.|+.|.+++|
T Consensus 412 ~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitf 491 (593)
T KOG0344|consen 412 NINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITF 491 (593)
T ss_pred CcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCCCCCChHHHHHH
Q 037139 82 LTFHDTDVFYDLKQMLIQSNSPVPPELAKHE 112 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 112 (135)
+...+....+.+.+.+.....++|+++..+-
T Consensus 492 ytd~d~~~ir~iae~~~~sG~evpe~~m~~~ 522 (593)
T KOG0344|consen 492 YTDQDMPRIRSIAEVMEQSGCEVPEKIMGIK 522 (593)
T ss_pred eccccchhhhhHHHHHHHcCCcchHHHHhhh
Confidence 9999999999999999999999999987653
No 21
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=1.3e-23 Score=163.11 Aligned_cols=93 Identities=32% Similarity=0.503 Sum_probs=86.7
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
.|+.+..+||+|++++|..++++|++|+++|||||+++++|+|+|+|++||++|+|.+...|+||+||+||.|.+|.+++
T Consensus 249 ~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~ 328 (470)
T TIGR00614 249 LGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHL 328 (470)
T ss_pred cCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEE
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCChhHHHHH
Q 037139 81 FLTFHDTDVFYDL 93 (135)
Q Consensus 81 ~~~~~~~~~~~~~ 93 (135)
++.+.+...++.+
T Consensus 329 ~~~~~d~~~~~~~ 341 (470)
T TIGR00614 329 FYAPADINRLRRL 341 (470)
T ss_pred EechhHHHHHHHH
Confidence 9988776554433
No 22
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.90 E-value=2e-23 Score=166.44 Aligned_cols=100 Identities=39% Similarity=0.711 Sum_probs=92.9
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
.|+.+..+||+|++.+|+.++++|++|+++|||||+++++|+|+|+|++||+||+|.+...|+||+||+||.|+.|.+++
T Consensus 268 ~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~ 347 (629)
T PRK11634 268 NGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALL 347 (629)
T ss_pred CCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEE
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCChhHHHHHHHHHhhC
Q 037139 81 FLTFHDTDVFYDLKQMLIQS 100 (135)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~ 100 (135)
++.+.+...++.+++.++..
T Consensus 348 ~v~~~e~~~l~~ie~~~~~~ 367 (629)
T PRK11634 348 FVENRERRLLRNIERTMKLT 367 (629)
T ss_pred EechHHHHHHHHHHHHhCCC
Confidence 99988777777777765544
No 23
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.90 E-value=1.5e-23 Score=172.44 Aligned_cols=90 Identities=29% Similarity=0.506 Sum_probs=84.8
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
.|+++..|||+|++++|..++++|..|+++|||||+++++|||+|+|++||+||+|.+++.|+||+|||||.|.++.|++
T Consensus 703 ~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cIL 782 (1195)
T PLN03137 703 FGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVL 782 (1195)
T ss_pred CCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCChhHH
Q 037139 81 FLTFHDTDVF 90 (135)
Q Consensus 81 ~~~~~~~~~~ 90 (135)
++...+....
T Consensus 783 lys~~D~~~~ 792 (1195)
T PLN03137 783 YYSYSDYIRV 792 (1195)
T ss_pred EecHHHHHHH
Confidence 9987655433
No 24
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=5.5e-23 Score=151.70 Aligned_cols=110 Identities=36% Similarity=0.629 Sum_probs=97.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCC------CHHHHHHHhhhcCCCCCC
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPG------NIEMYTHRIGRTGRAGKT 75 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~------~~~~~~qr~GR~gR~~~~ 75 (135)
|+.|.++||+|+-.+|..+++.|+.|+.+|||+|++++||+|++.|++|||||+|. +.+.|+||+||+||.|+.
T Consensus 354 Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkk 433 (477)
T KOG0332|consen 354 GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKK 433 (477)
T ss_pred CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhccccccccc
Confidence 78999999999999999999999999999999999999999999999999999996 689999999999999999
Q ss_pred ceEEEEeecC-ChhHHHHHHHHHhhCC-CCCChHHHHH
Q 037139 76 GVATTFLTFH-DTDVFYDLKQMLIQSN-SPVPPELAKH 111 (135)
Q Consensus 76 g~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~~~ 111 (135)
|.++.++... ....++.++++++... ...|..+.+.
T Consensus 434 G~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E~ 471 (477)
T KOG0332|consen 434 GLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDEL 471 (477)
T ss_pred ceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHHH
Confidence 9999999876 4566789999986554 3444445443
No 25
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.89 E-value=4.7e-23 Score=123.51 Aligned_cols=73 Identities=48% Similarity=0.804 Sum_probs=71.0
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG 73 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~ 73 (135)
.|+.+..+||++++++|..+++.|++++.+|||||+++++|+|+|.+++||++++|++...|.|++||++|.|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999975
No 26
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.89 E-value=7.2e-23 Score=163.07 Aligned_cols=90 Identities=32% Similarity=0.526 Sum_probs=84.9
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
.|+.+..+||+|++++|.++++.|+.|+++|||||+++++|+|+|+|++||+||+|.+.+.|+||+||+||.|.+|.+++
T Consensus 259 ~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~il 338 (607)
T PRK11057 259 RGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (607)
T ss_pred CCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEE
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCChhHH
Q 037139 81 FLTFHDTDVF 90 (135)
Q Consensus 81 ~~~~~~~~~~ 90 (135)
++++.+...+
T Consensus 339 l~~~~d~~~~ 348 (607)
T PRK11057 339 FYDPADMAWL 348 (607)
T ss_pred EeCHHHHHHH
Confidence 9988765443
No 27
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.88 E-value=1.4e-22 Score=164.23 Aligned_cols=99 Identities=20% Similarity=0.270 Sum_probs=88.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
+.++..+||+|++++|.+++++|++|++++||||+++++|+|+|++++||++|.|.+..+|+||+||+||.|..|.++++
T Consensus 303 ~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v 382 (742)
T TIGR03817 303 AERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLV 382 (742)
T ss_pred ccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEE
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eecC--ChhHHHHHHHHHhhC
Q 037139 82 LTFH--DTDVFYDLKQMLIQS 100 (135)
Q Consensus 82 ~~~~--~~~~~~~~~~~~~~~ 100 (135)
.... +...+...+++++..
T Consensus 383 ~~~~~~d~~~~~~~~~~~~~~ 403 (742)
T TIGR03817 383 ARDDPLDTYLVHHPEALFDRP 403 (742)
T ss_pred eCCChHHHHHHhCHHHHhcCC
Confidence 8643 444455566666554
No 28
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.87 E-value=4.1e-22 Score=158.41 Aligned_cols=89 Identities=38% Similarity=0.586 Sum_probs=83.5
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
.|+.+..+||+|++++|+.++++|.+|+++|||||+++++|+|+|++++||++|+|.+.+.|.|++||+||.|.++.+++
T Consensus 247 ~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il 326 (591)
T TIGR01389 247 QGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAIL 326 (591)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEE
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCChhH
Q 037139 81 FLTFHDTDV 89 (135)
Q Consensus 81 ~~~~~~~~~ 89 (135)
++.+.+...
T Consensus 327 ~~~~~d~~~ 335 (591)
T TIGR01389 327 LYSPADIAL 335 (591)
T ss_pred ecCHHHHHH
Confidence 988765433
No 29
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.87 E-value=9.2e-22 Score=153.91 Aligned_cols=94 Identities=38% Similarity=0.569 Sum_probs=88.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..|||||+.++|+.+.++|..++++|+|||.++++|||-|+|++|||||+|.+++.|.|-+|||||.|.++.++++
T Consensus 254 g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill 333 (590)
T COG0514 254 GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILL 333 (590)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEe
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHH
Q 037139 82 LTFHDTDVFYDLKQ 95 (135)
Q Consensus 82 ~~~~~~~~~~~~~~ 95 (135)
+.+.|....+.+.+
T Consensus 334 ~~~~D~~~~~~~i~ 347 (590)
T COG0514 334 YSPEDIRWQRYLIE 347 (590)
T ss_pred eccccHHHHHHHHH
Confidence 99988765544433
No 30
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=2.3e-22 Score=153.29 Aligned_cols=96 Identities=47% Similarity=0.746 Sum_probs=91.2
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
+|++++-+||++++.+|.+.+++|+.+++++|||||++++|+|++.|..||||++|.+...|+||+||+.|.|+.|.+++
T Consensus 449 lgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVt 528 (691)
T KOG0338|consen 449 LGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVT 528 (691)
T ss_pred hhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEE
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCChhHHHHHHHH
Q 037139 81 FLTFHDTDVFYDLKQM 96 (135)
Q Consensus 81 ~~~~~~~~~~~~~~~~ 96 (135)
|+...+...++.+-+-
T Consensus 529 lvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 529 LVGESDRKLLKEIIKS 544 (691)
T ss_pred EeccccHHHHHHHHhh
Confidence 9999988777666654
No 31
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.87 E-value=2.5e-22 Score=152.13 Aligned_cols=95 Identities=40% Similarity=0.644 Sum_probs=91.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
.+.|..+||++++..|..+...|++.+.-||+|||+.+||+|+|+|++||+||+|.++++|+||+||+||.|..|.++++
T Consensus 354 dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~ 433 (543)
T KOG0342|consen 354 DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLL 433 (543)
T ss_pred CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEE
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHH
Q 037139 82 LTFHDTDVFYDLKQM 96 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~ 96 (135)
+.+.+..+++.+++.
T Consensus 434 l~p~El~Flr~LK~l 448 (543)
T KOG0342|consen 434 LAPWELGFLRYLKKL 448 (543)
T ss_pred eChhHHHHHHHHhhC
Confidence 999999999999854
No 32
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=8.1e-22 Score=148.88 Aligned_cols=90 Identities=39% Similarity=0.622 Sum_probs=84.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
+..+..+||.|++..|..+++.|+...-.+|+|||++++|+|+|++++||+||+|.+++.|+||+||++|.|+.|.+++|
T Consensus 281 ~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 281 KREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVF 360 (567)
T ss_pred CCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEE
Confidence 45788999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHH
Q 037139 82 LTFHDTDVFY 91 (135)
Q Consensus 82 ~~~~~~~~~~ 91 (135)
+.+.+..+.+
T Consensus 361 l~p~E~aYve 370 (567)
T KOG0345|consen 361 LNPREEAYVE 370 (567)
T ss_pred ecccHHHHHH
Confidence 9997665543
No 33
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=2.6e-21 Score=148.13 Aligned_cols=96 Identities=40% Similarity=0.613 Sum_probs=89.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
+.++.-+||+|++++|..+++.|....-.||+|||++++|+|+|+|.+||+||+|.+..+|+||+||+.|.|..|.+++|
T Consensus 471 ~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLf 550 (708)
T KOG0348|consen 471 DLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLF 550 (708)
T ss_pred cceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEE
Confidence 45678899999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHH
Q 037139 82 LTFHDTDVFYDLKQML 97 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~ 97 (135)
+.+.+.++++.++..-
T Consensus 551 L~P~Eaey~~~l~~~~ 566 (708)
T KOG0348|consen 551 LLPSEAEYVNYLKKHH 566 (708)
T ss_pred ecccHHHHHHHHHhhc
Confidence 9999998877776643
No 34
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=3.1e-21 Score=142.49 Aligned_cols=110 Identities=37% Similarity=0.687 Sum_probs=105.7
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
+|+.+.++||+|.+.+|..+++.|+.|..+|||+|+.+++|+|+..+++|+|||+|....+|++|+||+||.|.+|.++.
T Consensus 286 ~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in 365 (397)
T KOG0327|consen 286 HGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAIN 365 (397)
T ss_pred CCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeee
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCChhHHHHHHHHHhhCCCCCChHHHH
Q 037139 81 FLTFHDTDVFYDLKQMLIQSNSPVPPELAK 110 (135)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 110 (135)
++...+...++.+++++.....++|.....
T Consensus 366 ~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~ 395 (397)
T KOG0327|consen 366 FVTEEDVRDLKDIEKFYNTPIEELPSNFAD 395 (397)
T ss_pred eehHhhHHHHHhHHHhcCCcceecccchhh
Confidence 999999999999999999999999987653
No 35
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=6.3e-21 Score=145.01 Aligned_cols=98 Identities=39% Similarity=0.615 Sum_probs=89.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
++++.++.|+++.+.|.+.++.|+.|++++|||||+++||+|+.+++.|||||+|.+...|+||+||++|.|+.|.++.+
T Consensus 457 ~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tl 536 (620)
T KOG0350|consen 457 NFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITL 536 (620)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEe
Confidence 35567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhh
Q 037139 82 LTFHDTDVFYDLKQMLIQ 99 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~ 99 (135)
+...+...|.++.+....
T Consensus 537 l~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 537 LDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred eccccchHHHHHHHHhcc
Confidence 999888777666554433
No 36
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.84 E-value=5.3e-20 Score=147.23 Aligned_cols=82 Identities=27% Similarity=0.455 Sum_probs=78.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCC-CHHHHHHHhhhcCCCCCCceEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPG-NIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~-~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
++.+..+||+|++++|.+++++|++|+++|||||+++++|+|+|++++||++|.|. +...|.||+||+||.|..|.|++
T Consensus 482 ~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il 561 (630)
T TIGR00643 482 KYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLL 561 (630)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEE
Confidence 56799999999999999999999999999999999999999999999999999986 68899999999999999999999
Q ss_pred Eee
Q 037139 81 FLT 83 (135)
Q Consensus 81 ~~~ 83 (135)
++.
T Consensus 562 ~~~ 564 (630)
T TIGR00643 562 VYK 564 (630)
T ss_pred EEC
Confidence 984
No 37
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.83 E-value=1.8e-20 Score=144.06 Aligned_cols=94 Identities=38% Similarity=0.592 Sum_probs=87.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+++.++||.|++..|.+++++|.....-||+|||++++|+|||.|++||++|.|.++.+|+||+||+.|.+..|.++++
T Consensus 339 g~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~ 418 (758)
T KOG0343|consen 339 GIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLM 418 (758)
T ss_pred CCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEE
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCC-hhHHHHHHH
Q 037139 82 LTFHD-TDVFYDLKQ 95 (135)
Q Consensus 82 ~~~~~-~~~~~~~~~ 95 (135)
+.+.+ ..+...+++
T Consensus 419 L~psEeE~~l~~Lq~ 433 (758)
T KOG0343|consen 419 LTPSEEEAMLKKLQK 433 (758)
T ss_pred EcchhHHHHHHHHHH
Confidence 99987 444444443
No 38
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.83 E-value=7.3e-20 Score=147.49 Aligned_cols=83 Identities=22% Similarity=0.390 Sum_probs=78.6
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCC-CHHHHHHHhhhcCCCCCCceEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPG-NIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~-~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
++++..+||+|++++|.+++++|++|+++|||||+++++|+|+|++++||++|.|. ....|.||+||+||.|..|.|++
T Consensus 505 ~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il 584 (681)
T PRK10917 505 ELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVL 584 (681)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEE
Confidence 36799999999999999999999999999999999999999999999999999987 58899999999999999999999
Q ss_pred Eeec
Q 037139 81 FLTF 84 (135)
Q Consensus 81 ~~~~ 84 (135)
++..
T Consensus 585 l~~~ 588 (681)
T PRK10917 585 LYKD 588 (681)
T ss_pred EECC
Confidence 9953
No 39
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.81 E-value=4.5e-19 Score=146.01 Aligned_cols=84 Identities=25% Similarity=0.374 Sum_probs=79.1
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCC-CHHHHHHHhhhcCCCCCCceEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPG-NIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~-~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
++++..+||+|++++|++++++|++|+++|||||+++++|+|+|++++||+++.|. +..+|.||+||+||.|..|.|++
T Consensus 686 ~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~ail 765 (926)
T TIGR00580 686 EARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYL 765 (926)
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEE
Confidence 57899999999999999999999999999999999999999999999999999875 68899999999999999999999
Q ss_pred EeecC
Q 037139 81 FLTFH 85 (135)
Q Consensus 81 ~~~~~ 85 (135)
++...
T Consensus 766 l~~~~ 770 (926)
T TIGR00580 766 LYPHQ 770 (926)
T ss_pred EECCc
Confidence 98654
No 40
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.81 E-value=2.4e-19 Score=147.53 Aligned_cols=98 Identities=21% Similarity=0.372 Sum_probs=86.1
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcC--CCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTK--RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVAT 79 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g--~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~ 79 (135)
|+++..+||+|++.+|.++++.|+++ ..+|||||+++++|+|++.+++||+||+|+++..|.||+||++|.|+.+.+.
T Consensus 518 Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~ 597 (956)
T PRK04914 518 GIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQ 597 (956)
T ss_pred CeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEE
Confidence 78999999999999999999999984 5999999999999999999999999999999999999999999999988777
Q ss_pred EEeecCChhHHHHHHHHHhh
Q 037139 80 TFLTFHDTDVFYDLKQMLIQ 99 (135)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~ 99 (135)
+++........+.+.+.+..
T Consensus 598 i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 598 IHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred EEEccCCCCHHHHHHHHHhh
Confidence 76665555455555555554
No 41
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.81 E-value=3.3e-20 Score=142.59 Aligned_cols=101 Identities=40% Similarity=0.590 Sum_probs=94.8
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
+++....+|+.|.++.|.+.+++|++..--||||||++++|+|+|.|.+||+|-.|.+.+.|+||.||+.|.+..|..++
T Consensus 486 L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvm 565 (731)
T KOG0347|consen 486 LDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVM 565 (731)
T ss_pred cCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEE
Confidence 46677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCChhHHHHHHHHHhhCC
Q 037139 81 FLTFHDTDVFYDLKQMLIQSN 101 (135)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~ 101 (135)
++.+.+...+.++.+.++...
T Consensus 566 l~~P~e~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 566 LCGPQEVGPLKKLCKTLKKKE 586 (731)
T ss_pred EeChHHhHHHHHHHHHHhhcc
Confidence 999999988888888876643
No 42
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=2.5e-19 Score=136.85 Aligned_cols=121 Identities=45% Similarity=0.682 Sum_probs=112.4
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
.||.|..+||+|.+.+|.+++.+|+.+...||++||+.++|+|+|.+..|||||.-.+++.|.||+||+||.|..|.+++
T Consensus 491 k~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayT 570 (731)
T KOG0339|consen 491 KGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYT 570 (731)
T ss_pred ccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeE
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCChhHHHHHHHHHhhCCCCCChHHHHHH--HhhCCCCCC
Q 037139 81 FLTFHDTDVFYDLKQMLIQSNSPVPPELAKHE--ASKFKPGTI 121 (135)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~ 121 (135)
++++.+..+.-.|.+-|+...+.+|+.|.++. .++|+...+
T Consensus 571 lvTeKDa~fAG~LVnnLe~agQnVP~~l~dlamk~s~fr~~r~ 613 (731)
T KOG0339|consen 571 LVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAMKSSWFRSSRF 613 (731)
T ss_pred EechhhHHHhhHHHHHHhhccccCChHHHHHHhhhhhhhhhhc
Confidence 99999999999999999999999999998764 455554433
No 43
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.80 E-value=3e-19 Score=106.89 Aligned_cols=72 Identities=57% Similarity=0.875 Sum_probs=69.6
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCC
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG 73 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~ 73 (135)
++.+..+||+|++++|..+++.|+.++..||++|+++++|+|+|.++.||.+++|++...|.|++||++|.|
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 678999999999999999999999999999999999999999999999999999999999999999999975
No 44
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.79 E-value=5.3e-19 Score=145.70 Aligned_cols=82 Identities=23% Similarity=0.325 Sum_probs=73.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCC-CCCceEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA-GKTGVATT 80 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~-~~~g~~~~ 80 (135)
+..+.++||+|++++|..++++|++|+++|||||+++++|+|+|++++||+++.|.+...|+||+||+||. |..+.+++
T Consensus 314 ~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~i 393 (876)
T PRK13767 314 EDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRI 393 (876)
T ss_pred ccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999986 33344444
Q ss_pred Eee
Q 037139 81 FLT 83 (135)
Q Consensus 81 ~~~ 83 (135)
+..
T Consensus 394 i~~ 396 (876)
T PRK13767 394 IVV 396 (876)
T ss_pred EEc
Confidence 443
No 45
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.79 E-value=6.7e-19 Score=134.27 Aligned_cols=78 Identities=38% Similarity=0.549 Sum_probs=73.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEEeecCChh
Q 037139 10 GGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTD 88 (135)
Q Consensus 10 g~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~~~~~~~~ 88 (135)
.||+++++.+++++|++|+++|||||++.++|+|+|.++.||.|++-.|...++||.||+||. +.|.+++++..+..+
T Consensus 407 ~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtrd 484 (542)
T COG1111 407 KGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTRD 484 (542)
T ss_pred cccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCchH
Confidence 579999999999999999999999999999999999999999999999999999999999998 688999998877443
No 46
>PRK02362 ski2-like helicase; Provisional
Probab=99.78 E-value=8.6e-19 Score=142.47 Aligned_cols=83 Identities=29% Similarity=0.463 Sum_probs=76.1
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEE----ec-----CCCCHHHHHHHhhhcCCCC
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN----YD-----MPGNIEMYTHRIGRTGRAG 73 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~----~d-----~p~~~~~~~qr~GR~gR~~ 73 (135)
..|++|||+|++.+|..+++.|++|.++|||||+++++|+|+|.+.+||+ || .|.+..+|.||+|||||.|
T Consensus 304 ~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g 383 (737)
T PRK02362 304 KGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPG 383 (737)
T ss_pred hCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCC
Confidence 46899999999999999999999999999999999999999999999996 76 6889999999999999987
Q ss_pred CC--ceEEEEeecC
Q 037139 74 KT--GVATTFLTFH 85 (135)
Q Consensus 74 ~~--g~~~~~~~~~ 85 (135)
.+ |.+++++...
T Consensus 384 ~d~~G~~ii~~~~~ 397 (737)
T PRK02362 384 LDPYGEAVLLAKSY 397 (737)
T ss_pred CCCCceEEEEecCc
Confidence 54 8888888654
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.78 E-value=4.9e-18 Score=142.44 Aligned_cols=84 Identities=26% Similarity=0.369 Sum_probs=76.2
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCC-CCHHHHHHHhhhcCCCCCCceEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMP-GNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p-~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
++++.++||+|++++|++++.+|++|+++|||||+++++|+|+|++++||..+.. .+..+|+||+||+||.+..|.|++
T Consensus 835 ~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~l 914 (1147)
T PRK10689 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL 914 (1147)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEE
Confidence 5689999999999999999999999999999999999999999999999965543 467789999999999999999998
Q ss_pred EeecC
Q 037139 81 FLTFH 85 (135)
Q Consensus 81 ~~~~~ 85 (135)
++...
T Consensus 915 l~~~~ 919 (1147)
T PRK10689 915 LTPHP 919 (1147)
T ss_pred EeCCC
Confidence 88643
No 48
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.77 E-value=4.8e-18 Score=136.36 Aligned_cols=115 Identities=22% Similarity=0.334 Sum_probs=101.2
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecC-----CCCHHHHHHHhhhcCCCCCC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDM-----PGNIEMYTHRIGRTGRAGKT 75 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~-----p~~~~~~~qr~GR~gR~~~~ 75 (135)
.|+++..+||++++.+|..+++.|+.|++.|+|||+.+++|+|+|.+++|+++|. |.+...|+||+||+||. ..
T Consensus 469 ~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~ 547 (652)
T PRK05298 469 LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VN 547 (652)
T ss_pred cceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CC
Confidence 3788999999999999999999999999999999999999999999999999885 78999999999999996 68
Q ss_pred ceEEEEeec---------CChhHHHHHHHHHhhCCCCCChHHHHHHHhhC
Q 037139 76 GVATTFLTF---------HDTDVFYDLKQMLIQSNSPVPPELAKHEASKF 116 (135)
Q Consensus 76 g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 116 (135)
|.+++++.. .+....+.++..++.....+|+.+.+.....+
T Consensus 548 G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 597 (652)
T PRK05298 548 GKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTIKKKIRDIL 597 (652)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhHHHHHHHHH
Confidence 999999984 35556677778889999999999876655544
No 49
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.76 E-value=3.1e-18 Score=145.32 Aligned_cols=78 Identities=31% Similarity=0.428 Sum_probs=70.9
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCC-CCCceEEEEe
Q 037139 5 VTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA-GKTGVATTFL 82 (135)
Q Consensus 5 v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~-~~~g~~~~~~ 82 (135)
+.+|||+|++++|..++++|++|++++||||+.+++|||++++++||+++.|.++.+|+||+||+||. +..+.++++.
T Consensus 304 a~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p 382 (1490)
T PRK09751 304 ARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFP 382 (1490)
T ss_pred eeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEe
Confidence 67899999999999999999999999999999999999999999999999999999999999999996 3344555433
No 50
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.76 E-value=2.5e-18 Score=139.47 Aligned_cols=111 Identities=43% Similarity=0.710 Sum_probs=104.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+.++.+|..+++.|+++.+++||||+++++|+|++.+.+|||||.|.....|+||+||+||.|..|.+++|
T Consensus 637 g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtF 716 (997)
T KOG0334|consen 637 GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTF 716 (997)
T ss_pred CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEE
Confidence 66777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCCCCCChHHHHHH
Q 037139 82 LTFHDTDVFYDLKQMLIQSNSPVPPELAKHE 112 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 112 (135)
+.+.+......|.+.+.....++|..|..+.
T Consensus 717 i~p~q~~~a~dl~~al~~~~~~~P~~l~~l~ 747 (997)
T KOG0334|consen 717 ITPDQLKYAGDLCKALELSKQPVPKLLQALS 747 (997)
T ss_pred eChHHhhhHHHHHHHHHhccCCCchHHHHHH
Confidence 9998888888899999999999998877654
No 51
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.76 E-value=3.9e-18 Score=110.46 Aligned_cols=79 Identities=54% Similarity=0.844 Sum_probs=74.9
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
+..+.++||++++.+|..+++.|+++...||++|+++++|+|+|.+++||.+++|++...|.|++||++|.|+.|.+++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 52 GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEe
Confidence 5678899999999999999999999999999999999999999999999999999999999999999999998877664
No 52
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.75 E-value=1.5e-17 Score=133.26 Aligned_cols=110 Identities=20% Similarity=0.310 Sum_probs=92.7
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEec-----CCCCHHHHHHHhhhcCCCCCCc
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYD-----MPGNIEMYTHRIGRTGRAGKTG 76 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d-----~p~~~~~~~qr~GR~gR~~~~g 76 (135)
|+.+..+||++++.+|.++++.|+.|++.|||||+.+++|+|+|++++|+++| .|.+..+|+||+||+||. ..|
T Consensus 466 gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G 544 (655)
T TIGR00631 466 GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNG 544 (655)
T ss_pred ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCC
Confidence 78899999999999999999999999999999999999999999999999998 799999999999999998 589
Q ss_pred eEEEEeecCChhHHHHHH---------HHHhhCCCCCChHHHHHH
Q 037139 77 VATTFLTFHDTDVFYDLK---------QMLIQSNSPVPPELAKHE 112 (135)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~ 112 (135)
.+++++...+......+. ..++......|+.+.+..
T Consensus 545 ~vi~~~~~~~~~~~~ai~~~~~~~~iq~~~~~~~~~~p~~~~~~~ 589 (655)
T TIGR00631 545 KVIMYADKITDSMQKAIEETERRRKIQMAYNEEHGITPQTIRKPI 589 (655)
T ss_pred EEEEEEcCCCHHHHHHHHHHHhHHHHHhhhhhhcCCCCcccCcch
Confidence 999999876554433333 344455566666665443
No 53
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.73 E-value=3.6e-18 Score=139.39 Aligned_cols=84 Identities=23% Similarity=0.313 Sum_probs=77.2
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCC------------------CHHHHH
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPG------------------NIEMYT 63 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~------------------~~~~~~ 63 (135)
++.+..+||+|++++|.++++.|++|+.+|||||+++++|+|+|+|++||+++.|. |..+|.
T Consensus 236 ~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~ 315 (819)
T TIGR01970 236 DVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASAT 315 (819)
T ss_pred CcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHH
Confidence 57899999999999999999999999999999999999999999999999999875 245689
Q ss_pred HHhhhcCCCCCCceEEEEeecCC
Q 037139 64 HRIGRTGRAGKTGVATTFLTFHD 86 (135)
Q Consensus 64 qr~GR~gR~~~~g~~~~~~~~~~ 86 (135)
||+||+||. .+|.|+.+++..+
T Consensus 316 QR~GRAGR~-~~G~cyrL~t~~~ 337 (819)
T TIGR01970 316 QRAGRAGRL-EPGVCYRLWSEEQ 337 (819)
T ss_pred hhhhhcCCC-CCCEEEEeCCHHH
Confidence 999999999 7999999998654
No 54
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.73 E-value=1.4e-17 Score=130.35 Aligned_cols=87 Identities=41% Similarity=0.645 Sum_probs=83.4
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
.|+.|.++.|.|++.+|..++++++.-..+|||+||+.++|+|-+++++|||.|+|.+-.+|.||+|||||.|..|.+++
T Consensus 295 sG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT 374 (980)
T KOG4284|consen 295 SGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVT 374 (980)
T ss_pred cCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEE
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCh
Q 037139 81 FLTFHDT 87 (135)
Q Consensus 81 ~~~~~~~ 87 (135)
++.....
T Consensus 375 ~~~~~~e 381 (980)
T KOG4284|consen 375 LLEDERE 381 (980)
T ss_pred Eeccchh
Confidence 9987644
No 55
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.73 E-value=6.3e-18 Score=127.31 Aligned_cols=100 Identities=30% Similarity=0.532 Sum_probs=90.2
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC-----------------------------------Cccccccc
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-----------------------------------AGRGIDIP 45 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~-----------------------------------~~~G~d~~ 45 (135)
+|++..+++|.|+...|.-++++|+.|-++|+||||. .++|+||.
T Consensus 291 FGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~ 370 (569)
T KOG0346|consen 291 FGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFH 370 (569)
T ss_pred hCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccch
Confidence 4788889999999999999999999999999999992 23899999
Q ss_pred CCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEEeecCChhHHHHHHHHHhhC
Q 037139 46 DVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQS 100 (135)
Q Consensus 46 ~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 100 (135)
+|.+|+|||+|.+...|+||+||++|.+++|.+++|+.+.+..-...++..+...
T Consensus 371 ~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~ 425 (569)
T KOG0346|consen 371 HVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKDE 425 (569)
T ss_pred heeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhhH
Confidence 9999999999999999999999999999999999999998887666666666543
No 56
>PRK00254 ski2-like helicase; Provisional
Probab=99.72 E-value=1.5e-17 Score=134.99 Aligned_cols=84 Identities=24% Similarity=0.371 Sum_probs=73.7
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEE-------ecCCC-CHHHHHHHhhhcCCCC-
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN-------YDMPG-NIEMYTHRIGRTGRAG- 73 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~-------~d~p~-~~~~~~qr~GR~gR~~- 73 (135)
..|.+|||+|++++|..+++.|++|.++|||||+++++|+|+|.+++||. ++.|. +..+|.||+|||||.|
T Consensus 296 ~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~ 375 (720)
T PRK00254 296 GGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKY 375 (720)
T ss_pred hCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCc
Confidence 46899999999999999999999999999999999999999999999983 44443 5779999999999965
Q ss_pred -CCceEEEEeecCC
Q 037139 74 -KTGVATTFLTFHD 86 (135)
Q Consensus 74 -~~g~~~~~~~~~~ 86 (135)
..|.+++++...+
T Consensus 376 d~~G~~ii~~~~~~ 389 (720)
T PRK00254 376 DEVGEAIIVATTEE 389 (720)
T ss_pred CCCceEEEEecCcc
Confidence 5689999987654
No 57
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.72 E-value=1.2e-17 Score=136.91 Aligned_cols=89 Identities=31% Similarity=0.537 Sum_probs=84.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+++..||+||++.+|..+.++|..++++|++||=++++|+|.|+|+.||+|.+|++.+.|.|-+|||||.|....|++|
T Consensus 509 ~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~ 588 (941)
T KOG0351|consen 509 GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLL 588 (941)
T ss_pred chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEe
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHH
Q 037139 82 LTFHDTDVF 90 (135)
Q Consensus 82 ~~~~~~~~~ 90 (135)
+...+...+
T Consensus 589 y~~~D~~~l 597 (941)
T KOG0351|consen 589 YGYADISEL 597 (941)
T ss_pred cchhHHHHH
Confidence 998865444
No 58
>PRK01172 ski2-like helicase; Provisional
Probab=99.71 E-value=3.8e-17 Score=131.79 Aligned_cols=96 Identities=27% Similarity=0.337 Sum_probs=76.0
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEec---------CCCCHHHHHHHhhhcCCCC
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYD---------MPGNIEMYTHRIGRTGRAG 73 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d---------~p~~~~~~~qr~GR~gR~~ 73 (135)
..+.++||+|++++|..+++.|++|.++|||||+++++|+|+|...+|| .| .|.+..+|.||+|||||.|
T Consensus 286 ~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 286 HGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred cCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCC
Confidence 3588999999999999999999999999999999999999999865444 33 3568899999999999987
Q ss_pred C--CceEEEEeecCChhHHHHHHHHHhhCC
Q 037139 74 K--TGVATTFLTFHDTDVFYDLKQMLIQSN 101 (135)
Q Consensus 74 ~--~g~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (135)
. .|.+++++...+ .....++++....
T Consensus 365 ~d~~g~~~i~~~~~~--~~~~~~~~l~~~~ 392 (674)
T PRK01172 365 YDQYGIGYIYAASPA--SYDAAKKYLSGEP 392 (674)
T ss_pred CCCcceEEEEecCcc--cHHHHHHHHcCCC
Confidence 4 566777765432 2234556664443
No 59
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.70 E-value=4.2e-17 Score=130.78 Aligned_cols=83 Identities=24% Similarity=0.370 Sum_probs=74.2
Q ss_pred CceEEEecCCCCHHHHHHHHHHH-hcCCCcEEEecCCCcccccccCCcEEEEec---CCC---------CHHHHHHHhhh
Q 037139 2 GYRVTTLHGGKSQEQREISLEGF-RTKRYNVLVATDVAGRGIDIPDVAHVINYD---MPG---------NIEMYTHRIGR 68 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f-~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d---~p~---------~~~~~~qr~GR 68 (135)
|+.+.++||+|++. ++++++| ++|+.+|||||+++++|+|+|+|++||++| .|. |.++|.||+||
T Consensus 421 ~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGR 498 (675)
T PHA02653 421 IYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGR 498 (675)
T ss_pred CceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccC
Confidence 57899999999985 5677777 789999999999999999999999999998 565 88899999999
Q ss_pred cCCCCCCceEEEEeecCCh
Q 037139 69 TGRAGKTGVATTFLTFHDT 87 (135)
Q Consensus 69 ~gR~~~~g~~~~~~~~~~~ 87 (135)
+||. ++|.|+.+++..+.
T Consensus 499 AGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 499 VGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred cCCC-CCCeEEEEECHHHh
Confidence 9999 78999999987653
No 60
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.69 E-value=1.2e-16 Score=127.28 Aligned_cols=76 Identities=37% Similarity=0.484 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEEeecCCh
Q 037139 10 GGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 87 (135)
Q Consensus 10 g~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~~~~~~~ 87 (135)
.+|+++++++++++|++|+++|||||+++++|+|++.|++||.||.-.++...+||.|| ||.. .|.++++++..+.
T Consensus 456 ~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~-ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 456 TGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR-NSKCVLLTTGSEV 531 (746)
T ss_pred cccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc-CCeEEEEEcchhH
Confidence 47999999999999999999999999999999999999999999999999999999999 8874 5677777774433
No 61
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=9e-17 Score=130.12 Aligned_cols=85 Identities=29% Similarity=0.417 Sum_probs=78.1
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccc---cCCc-----EEEEecCCCCHHHHHHHhhhcCCC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDI---PDVA-----HVINYDMPGNIEMYTHRIGRTGRA 72 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~---~~v~-----~vi~~d~p~~~~~~~qr~GR~gR~ 72 (135)
.|+++..+||++.++++..+..+++.| +|+|||++++||+|+ |.|. +||++|+|.+...|.||+||+||.
T Consensus 451 ~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~ 528 (790)
T PRK09200 451 AGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQ 528 (790)
T ss_pred CCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCC
Confidence 378999999999999988888888776 799999999999999 6898 999999999999999999999999
Q ss_pred CCCceEEEEeecCCh
Q 037139 73 GKTGVATTFLTFHDT 87 (135)
Q Consensus 73 ~~~g~~~~~~~~~~~ 87 (135)
|.+|.++.+++..+.
T Consensus 529 G~~G~s~~~is~eD~ 543 (790)
T PRK09200 529 GDPGSSQFFISLEDD 543 (790)
T ss_pred CCCeeEEEEEcchHH
Confidence 999999999987554
No 62
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.68 E-value=3e-16 Score=123.70 Aligned_cols=99 Identities=18% Similarity=0.326 Sum_probs=85.1
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCC-CHHHHHHHhhhcCCCCCCceEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPG-NIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~-~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
++++..+||.|+++++.+++++|++|+++|||||.+++.|+|+|+.+++|..|.-. ..+++.|..||+||.+..++|++
T Consensus 507 ~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~L 586 (677)
T COG1200 507 ELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVL 586 (677)
T ss_pred cceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEE
Confidence 46799999999999999999999999999999999999999999999999888654 78999999999999999999999
Q ss_pred EeecCChhHHHHHHHHHhhC
Q 037139 81 FLTFHDTDVFYDLKQMLIQS 100 (135)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~ 100 (135)
++.+.....-+.--+.+...
T Consensus 587 l~~~~~~~~a~~RL~im~~t 606 (677)
T COG1200 587 LYKPPLSEVAKQRLKIMRET 606 (677)
T ss_pred EeCCCCChhHHHHHHHHHhc
Confidence 99987743333333334443
No 63
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.68 E-value=4e-17 Score=133.37 Aligned_cols=85 Identities=20% Similarity=0.319 Sum_probs=76.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCC------------------CHHHHH
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPG------------------NIEMYT 63 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~------------------~~~~~~ 63 (135)
++.+..+||+|++++|.++++.|++|+.+|||||+++++|+|+|+|++||+++.+. |..+|.
T Consensus 239 ~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~ 318 (812)
T PRK11664 239 DVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMT 318 (812)
T ss_pred CceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhh
Confidence 56789999999999999999999999999999999999999999999999988764 346899
Q ss_pred HHhhhcCCCCCCceEEEEeecCCh
Q 037139 64 HRIGRTGRAGKTGVATTFLTFHDT 87 (135)
Q Consensus 64 qr~GR~gR~~~~g~~~~~~~~~~~ 87 (135)
||+||+||. .+|.|+.+++..+.
T Consensus 319 QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 319 QRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred hhccccCCC-CCcEEEEecCHHHH
Confidence 999999999 69999999986533
No 64
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=1.8e-16 Score=126.13 Aligned_cols=85 Identities=32% Similarity=0.457 Sum_probs=73.4
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCccccccc---CCc-----EEEEecCCCCHHHHHHHhhhcCCC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIP---DVA-----HVINYDMPGNIEMYTHRIGRTGRA 72 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~---~v~-----~vi~~d~p~~~~~~~qr~GR~gR~ 72 (135)
.|+++..+||+++.+ +..+..|+.++.+|+|||+++++|+|++ +|. +||++|.|.+...|.||+||+||.
T Consensus 496 ~gi~~~~Lhg~~~~r--E~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRq 573 (656)
T PRK12898 496 AGLPHQVLNAKQDAE--EAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQ 573 (656)
T ss_pred CCCCEEEeeCCcHHH--HHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCC
Confidence 378999999997644 4555556666668999999999999999 665 999999999999999999999999
Q ss_pred CCCceEEEEeecCCh
Q 037139 73 GKTGVATTFLTFHDT 87 (135)
Q Consensus 73 ~~~g~~~~~~~~~~~ 87 (135)
|.+|.++.+++..|.
T Consensus 574 G~~G~s~~~is~eD~ 588 (656)
T PRK12898 574 GDPGSYEAILSLEDD 588 (656)
T ss_pred CCCeEEEEEechhHH
Confidence 999999999987554
No 65
>PRK13766 Hef nuclease; Provisional
Probab=99.67 E-value=8e-16 Score=125.74 Aligned_cols=84 Identities=35% Similarity=0.485 Sum_probs=75.9
Q ss_pred CceEEEecCC--------CCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCC
Q 037139 2 GYRVTTLHGG--------KSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG 73 (135)
Q Consensus 2 g~~v~~~hg~--------~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~ 73 (135)
|+.+..+||. |++.+|..++++|++|++++||||+++++|+|+|.+++||+||+|++...|+||+||+||.+
T Consensus 389 ~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~ 468 (773)
T PRK13766 389 GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE 468 (773)
T ss_pred CCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC
Confidence 5667777775 99999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCceEEEEeecCC
Q 037139 74 KTGVATTFLTFHD 86 (135)
Q Consensus 74 ~~g~~~~~~~~~~ 86 (135)
+|.++.++....
T Consensus 469 -~~~v~~l~~~~t 480 (773)
T PRK13766 469 -EGRVVVLIAKGT 480 (773)
T ss_pred -CCEEEEEEeCCC
Confidence 477888877553
No 66
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.66 E-value=4.3e-16 Score=122.01 Aligned_cols=74 Identities=23% Similarity=0.196 Sum_probs=70.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEec-CCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCC
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT-DVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKT 75 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T-~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~ 75 (135)
|.++..+||+|+.++|..+++.|++|+..||||| +++++|+|+|++++||+++++.+...|+||+||++|.+..
T Consensus 368 g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~ 442 (501)
T PHA02558 368 YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGS 442 (501)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCC
Confidence 6789999999999999999999999999999998 8999999999999999999999999999999999997644
No 67
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.65 E-value=2.7e-16 Score=118.21 Aligned_cols=81 Identities=25% Similarity=0.312 Sum_probs=68.2
Q ss_pred eEEEecCCCCHHHHHH----HHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCC----
Q 037139 4 RVTTLHGGKSQEQREI----SLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKT---- 75 (135)
Q Consensus 4 ~v~~~hg~~~~~~r~~----~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~---- 75 (135)
.+..+||+|++.+|.+ +++.|++|+..|||||+++++|+|++ ++++|+++.| .++|+||+||+||.|..
T Consensus 250 ~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~ 326 (358)
T TIGR01587 250 EIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGEN 326 (358)
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCC
Confidence 5889999999999976 48999999999999999999999996 7888888766 78999999999998743
Q ss_pred ceEEEEeecCCh
Q 037139 76 GVATTFLTFHDT 87 (135)
Q Consensus 76 g~~~~~~~~~~~ 87 (135)
|.++++....+.
T Consensus 327 ~~~~v~~~~~~~ 338 (358)
T TIGR01587 327 FEVYIITIAPEG 338 (358)
T ss_pred CeEEEEeecCCC
Confidence 366666654433
No 68
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=1.8e-15 Score=121.76 Aligned_cols=85 Identities=22% Similarity=0.358 Sum_probs=74.5
Q ss_pred EEEecCCCCHHHHHHHHHHHhcC-CCcEEEecCCCcccccccCCcEEEEecCC-CCHHHHHHHhhhcCCCCCCc------
Q 037139 5 VTTLHGGKSQEQREISLEGFRTK-RYNVLVATDVAGRGIDIPDVAHVINYDMP-GNIEMYTHRIGRTGRAGKTG------ 76 (135)
Q Consensus 5 v~~~hg~~~~~~r~~~~~~f~~g-~~~ilv~T~~~~~G~d~~~v~~vi~~d~p-~~~~~~~qr~GR~gR~~~~g------ 76 (135)
+..+||++++.+|++++++|+.| ++++||+|+++.+|+|+|++++||+++.| .+...|+||+||++|.+..+
T Consensus 518 ~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~ 597 (732)
T TIGR00603 518 KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYN 597 (732)
T ss_pred CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCcccccc
Confidence 46789999999999999999875 88999999999999999999999999998 49999999999999976443
Q ss_pred -eEEEEeecCChhH
Q 037139 77 -VATTFLTFHDTDV 89 (135)
Q Consensus 77 -~~~~~~~~~~~~~ 89 (135)
..+.+++.+..+.
T Consensus 598 A~fY~lVs~dT~E~ 611 (732)
T TIGR00603 598 AFFYSLVSKDTQEM 611 (732)
T ss_pred ceEEEEecCCchHH
Confidence 4488888765544
No 69
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.63 E-value=6.4e-16 Score=116.55 Aligned_cols=92 Identities=27% Similarity=0.429 Sum_probs=86.5
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
.|+.+..+|+|+...+|.++.++|.++++.|+++|..+++|+|-|+|++||++|+|.+..-|.|-.|||||.|.+++|-+
T Consensus 278 ~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRL 357 (641)
T KOG0352|consen 278 AGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRL 357 (641)
T ss_pred cCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceee
Confidence 37788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCChhHHHH
Q 037139 81 FLTFHDTDVFYD 92 (135)
Q Consensus 81 ~~~~~~~~~~~~ 92 (135)
++...+.+.++-
T Consensus 358 YYsR~D~~~i~F 369 (641)
T KOG0352|consen 358 YYSRQDKNALNF 369 (641)
T ss_pred eecccchHHHHH
Confidence 999887765543
No 70
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.61 E-value=1.2e-15 Score=115.45 Aligned_cols=83 Identities=37% Similarity=0.702 Sum_probs=77.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
.+++.|+||+..|.+|++.++.|+.++++.|||||++++|+|+..+.++||.-+|.+..+|++|+||+||..+-|.+|++
T Consensus 532 ~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaisl 611 (725)
T KOG0349|consen 532 HYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISL 611 (725)
T ss_pred cceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999998777778777
Q ss_pred eec
Q 037139 82 LTF 84 (135)
Q Consensus 82 ~~~ 84 (135)
+..
T Consensus 612 vat 614 (725)
T KOG0349|consen 612 VAT 614 (725)
T ss_pred eec
Confidence 653
No 71
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.60 E-value=5.5e-15 Score=119.75 Aligned_cols=82 Identities=28% Similarity=0.380 Sum_probs=75.5
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCC-CCCCceEEEE
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGR-AGKTGVATTF 81 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR-~~~~g~~~~~ 81 (135)
..+..|||+++.+.|..+.++|++|+++.+|||+.++.|+|+.++++||+++.|.++..+.||+||+|+ .+....++++
T Consensus 279 ~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii 358 (814)
T COG1201 279 DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIII 358 (814)
T ss_pred CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEE
Confidence 568899999999999999999999999999999999999999999999999999999999999999996 5555677776
Q ss_pred eec
Q 037139 82 LTF 84 (135)
Q Consensus 82 ~~~ 84 (135)
...
T Consensus 359 ~~~ 361 (814)
T COG1201 359 AED 361 (814)
T ss_pred ecC
Confidence 665
No 72
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.60 E-value=3.3e-15 Score=120.44 Aligned_cols=84 Identities=29% Similarity=0.377 Sum_probs=75.8
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCccccccc---------CCcEEEEecCCCCHHHHHHHhhhcCC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIP---------DVAHVINYDMPGNIEMYTHRIGRTGR 71 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~---------~v~~vi~~d~p~~~~~~~qr~GR~gR 71 (135)
.|+++..+||.+.++++..+.++++.| .|+|||++++||+|++ .+.+|+++++|..... .||+||+||
T Consensus 447 ~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGR 523 (762)
T TIGR03714 447 EGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGR 523 (762)
T ss_pred CCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccC
Confidence 378899999999999988888877777 7999999999999999 8899999999988766 999999999
Q ss_pred CCCCceEEEEeecCCh
Q 037139 72 AGKTGVATTFLTFHDT 87 (135)
Q Consensus 72 ~~~~g~~~~~~~~~~~ 87 (135)
.|.+|.++.+++..+.
T Consensus 524 qG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 524 QGDPGSSQFFVSLEDD 539 (762)
T ss_pred CCCceeEEEEEccchh
Confidence 9999999999987654
No 73
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.58 E-value=1.1e-14 Score=117.08 Aligned_cols=85 Identities=28% Similarity=0.397 Sum_probs=79.2
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccC-------CcEEEEecCCCCHHHHHHHhhhcCCCC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPD-------VAHVINYDMPGNIEMYTHRIGRTGRAG 73 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~-------v~~vi~~d~p~~~~~~~qr~GR~gR~~ 73 (135)
.|++...+|++ +.+|+..+.+|+.+..+|+|||++++||+|++. .-+||+++.|.+...|.|+.||+||.|
T Consensus 428 ~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG 505 (745)
T TIGR00963 428 RGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQG 505 (745)
T ss_pred cCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCC
Confidence 37888999998 889999999999999999999999999999998 459999999999999999999999999
Q ss_pred CCceEEEEeecCCh
Q 037139 74 KTGVATTFLTFHDT 87 (135)
Q Consensus 74 ~~g~~~~~~~~~~~ 87 (135)
.+|.+..+++..+.
T Consensus 506 ~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 506 DPGSSRFFLSLEDN 519 (745)
T ss_pred CCcceEEEEeccHH
Confidence 99999999988755
No 74
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.54 E-value=6.9e-15 Score=123.69 Aligned_cols=80 Identities=21% Similarity=0.369 Sum_probs=71.1
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEec---------------CC---CCHHHHHHH
Q 037139 4 RVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYD---------------MP---GNIEMYTHR 65 (135)
Q Consensus 4 ~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d---------------~p---~~~~~~~qr 65 (135)
.+..+||+|++++|..+++. .|..+|||||+++++|+|+|+|++||+++ +| .|..+|.||
T Consensus 315 ~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QR 392 (1294)
T PRK11131 315 EILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQR 392 (1294)
T ss_pred eEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhh
Confidence 47789999999999999986 57899999999999999999999999986 33 466899999
Q ss_pred hhhcCCCCCCceEEEEeecCC
Q 037139 66 IGRTGRAGKTGVATTFLTFHD 86 (135)
Q Consensus 66 ~GR~gR~~~~g~~~~~~~~~~ 86 (135)
+||+||. .+|.|+.+++..+
T Consensus 393 aGRAGR~-~~G~c~rLyte~d 412 (1294)
T PRK11131 393 KGRCGRV-SEGICIRLYSEDD 412 (1294)
T ss_pred ccccCCC-CCcEEEEeCCHHH
Confidence 9999999 6899999998654
No 75
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.54 E-value=2.3e-14 Score=115.94 Aligned_cols=85 Identities=28% Similarity=0.440 Sum_probs=77.6
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCccccccc---CCc-----EEEEecCCCCHHHHHHHhhhcCCC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIP---DVA-----HVINYDMPGNIEMYTHRIGRTGRA 72 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~---~v~-----~vi~~d~p~~~~~~~qr~GR~gR~ 72 (135)
.|+++..+|+++..+++..+.++++.|. |+|||++++||+|++ +|. +||+++.|.+...|.|+.||+||.
T Consensus 463 ~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRq 540 (796)
T PRK12906 463 AGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQ 540 (796)
T ss_pred CCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccC
Confidence 3788999999999888888888888876 999999999999994 788 999999999999999999999999
Q ss_pred CCCceEEEEeecCCh
Q 037139 73 GKTGVATTFLTFHDT 87 (135)
Q Consensus 73 ~~~g~~~~~~~~~~~ 87 (135)
|.+|.+..+++..|.
T Consensus 541 G~~G~s~~~~sleD~ 555 (796)
T PRK12906 541 GDPGSSRFYLSLEDD 555 (796)
T ss_pred CCCcceEEEEeccch
Confidence 999999999987754
No 76
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.51 E-value=2e-14 Score=121.17 Aligned_cols=83 Identities=19% Similarity=0.297 Sum_probs=71.5
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCC------------------CCHHHHH
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMP------------------GNIEMYT 63 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p------------------~~~~~~~ 63 (135)
++.+..+||+|++++|.++++.+ +..+|+|||++++.|+++|+|.+||+++.+ .|..+|.
T Consensus 306 ~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~ 383 (1283)
T TIGR01967 306 HTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASAN 383 (1283)
T ss_pred CcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHH
Confidence 35688999999999999997654 346899999999999999999999998843 3668999
Q ss_pred HHhhhcCCCCCCceEEEEeecCCh
Q 037139 64 HRIGRTGRAGKTGVATTFLTFHDT 87 (135)
Q Consensus 64 qr~GR~gR~~~~g~~~~~~~~~~~ 87 (135)
||+||+||.+ +|.|+.+++..+.
T Consensus 384 QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 384 QRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred HHhhhhCCCC-CceEEEecCHHHH
Confidence 9999999997 9999999986543
No 77
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.51 E-value=5.1e-15 Score=111.25 Aligned_cols=100 Identities=38% Similarity=0.623 Sum_probs=93.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..++|.|++..|...+.+|+.++..+||.|+++++|+|+|-.+.|||||.|.+...|++|+||+.|.|+.|++|.+
T Consensus 285 g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~ 364 (529)
T KOG0337|consen 285 GGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSL 364 (529)
T ss_pred CCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEE
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCC
Q 037139 82 LTFHDTDVFYDLKQMLIQSN 101 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~ 101 (135)
+.+.+...+-.+..++....
T Consensus 365 V~~~~~~yl~DL~lflgr~~ 384 (529)
T KOG0337|consen 365 VASTDDPYLLDLQLFLGRPL 384 (529)
T ss_pred EecccchhhhhhhhhcCCce
Confidence 99998888877777766543
No 78
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.50 E-value=1.3e-13 Score=114.07 Aligned_cols=83 Identities=27% Similarity=0.368 Sum_probs=76.0
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCC-CCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMP-GNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p-~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
.++.+.||.|+..+-+.++..|.+|+.+|||||.+++.|+|+|+++.+|.-+.. ...+++.|..||+||.+..++|+.+
T Consensus 830 arI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl 909 (1139)
T COG1197 830 ARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFL 909 (1139)
T ss_pred eEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEe
Confidence 468999999999999999999999999999999999999999999998865544 3689999999999999999999999
Q ss_pred eecC
Q 037139 82 LTFH 85 (135)
Q Consensus 82 ~~~~ 85 (135)
+.+.
T Consensus 910 ~p~~ 913 (1139)
T COG1197 910 YPPQ 913 (1139)
T ss_pred ecCc
Confidence 9864
No 79
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.49 E-value=1.5e-13 Score=107.79 Aligned_cols=84 Identities=24% Similarity=0.414 Sum_probs=70.5
Q ss_pred CceEEEecCCCCHHHH--HHHHHHHhcCCCcEEEecCCCcccccccCCcEEE--EecC----CC------CHHHHHHHhh
Q 037139 2 GYRVTTLHGGKSQEQR--EISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVI--NYDM----PG------NIEMYTHRIG 67 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r--~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi--~~d~----p~------~~~~~~qr~G 67 (135)
+.++..+|++++...+ ++++++|++|+.+|||+|+++++|+|+|+|++|+ ++|. |. ....|.|++|
T Consensus 284 ~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~G 363 (505)
T TIGR00595 284 GARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAG 363 (505)
T ss_pred CCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHh
Confidence 4678899999887766 8999999999999999999999999999999885 5553 32 2567899999
Q ss_pred hcCCCCCCceEEEEeecC
Q 037139 68 RTGRAGKTGVATTFLTFH 85 (135)
Q Consensus 68 R~gR~~~~g~~~~~~~~~ 85 (135)
|+||.+..|.+++.....
T Consensus 364 RagR~~~~g~viiqt~~p 381 (505)
T TIGR00595 364 RAGRAEDPGQVIIQTYNP 381 (505)
T ss_pred ccCCCCCCCEEEEEeCCC
Confidence 999998899888665433
No 80
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.49 E-value=7.5e-14 Score=113.53 Aligned_cols=80 Identities=30% Similarity=0.475 Sum_probs=69.7
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEE----Eec-----CCCCHHHHHHHhhhcCCCCC
Q 037139 4 RVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVI----NYD-----MPGNIEMYTHRIGRTGRAGK 74 (135)
Q Consensus 4 ~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi----~~d-----~p~~~~~~~qr~GR~gR~~~ 74 (135)
.+++||++|+.++|..+.+.|+.|.++||+||.++++|+|+|.-..|| .|| .+.+.-++.||.|||||.|-
T Consensus 316 GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~ 395 (766)
T COG1204 316 GVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGY 395 (766)
T ss_pred CccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCc
Confidence 478999999999999999999999999999999999999999977776 566 55678999999999999874
Q ss_pred --CceEEEEee
Q 037139 75 --TGVATTFLT 83 (135)
Q Consensus 75 --~g~~~~~~~ 83 (135)
.|.++++..
T Consensus 396 d~~G~~~i~~~ 406 (766)
T COG1204 396 DDYGEAIILAT 406 (766)
T ss_pred CCCCcEEEEec
Confidence 456666653
No 81
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.48 E-value=2e-13 Score=110.31 Aligned_cols=85 Identities=24% Similarity=0.313 Sum_probs=72.0
Q ss_pred CceEEEecCCCC--HHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEE--ecCCCC----------HHHHHHHhh
Q 037139 2 GYRVTTLHGGKS--QEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN--YDMPGN----------IEMYTHRIG 67 (135)
Q Consensus 2 g~~v~~~hg~~~--~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~--~d~p~~----------~~~~~qr~G 67 (135)
+.++..+|++++ ++++++++++|++|+++|||+|+++++|+|+|++++|+. .|.+.+ ...|.|++|
T Consensus 452 ~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~G 531 (679)
T PRK05580 452 EARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAG 531 (679)
T ss_pred CCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHh
Confidence 567889999986 467999999999999999999999999999999999864 454433 367899999
Q ss_pred hcCCCCCCceEEEEeecCC
Q 037139 68 RTGRAGKTGVATTFLTFHD 86 (135)
Q Consensus 68 R~gR~~~~g~~~~~~~~~~ 86 (135)
|+||.+..|.+++.....+
T Consensus 532 RagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 532 RAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred hccCCCCCCEEEEEeCCCC
Confidence 9999998999997765443
No 82
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.47 E-value=1.4e-13 Score=112.12 Aligned_cols=74 Identities=23% Similarity=0.342 Sum_probs=62.7
Q ss_pred EEecCCCCHHHHH-----HHHHHHhc----CC-------CcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhc
Q 037139 6 TTLHGGKSQEQRE-----ISLEGFRT----KR-------YNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRT 69 (135)
Q Consensus 6 ~~~hg~~~~~~r~-----~~~~~f~~----g~-------~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~ 69 (135)
..+||+|++.+|. .++++|++ |+ ..|||||+++++|+|++. ++||++..| .+.|+||+||+
T Consensus 298 ~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRt 374 (844)
T TIGR02621 298 ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRV 374 (844)
T ss_pred eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhccc
Confidence 7899999999999 88999987 54 689999999999999987 888887766 58999999999
Q ss_pred CCCCCC-ceEEEEe
Q 037139 70 GRAGKT-GVATTFL 82 (135)
Q Consensus 70 gR~~~~-g~~~~~~ 82 (135)
||.|.. +..+.++
T Consensus 375 gR~G~~~~~~i~vv 388 (844)
T TIGR02621 375 NRFGELQACQIAVV 388 (844)
T ss_pred CCCCCCCCceEEEE
Confidence 999874 3334444
No 83
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=3.2e-13 Score=110.76 Aligned_cols=84 Identities=25% Similarity=0.404 Sum_probs=76.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCccccccc---CCc-----EEEEecCCCCHHHHHHHhhhcCCCC
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIP---DVA-----HVINYDMPGNIEMYTHRIGRTGRAG 73 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~---~v~-----~vi~~d~p~~~~~~~qr~GR~gR~~ 73 (135)
|+++..+|+ .+.+|+..+.+|+.+...|+|||++++||+|++ .|. +||.++.|.+...|.|+.||+||.|
T Consensus 622 gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqG 699 (1025)
T PRK12900 622 RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQG 699 (1025)
T ss_pred CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCC
Confidence 778889997 588999999999999999999999999999999 453 4588999999999999999999999
Q ss_pred CCceEEEEeecCCh
Q 037139 74 KTGVATTFLTFHDT 87 (135)
Q Consensus 74 ~~g~~~~~~~~~~~ 87 (135)
.+|.++.|++..+.
T Consensus 700 dpGsS~ffvSleD~ 713 (1025)
T PRK12900 700 DPGESVFYVSLEDE 713 (1025)
T ss_pred CCcceEEEechhHH
Confidence 99999999987655
No 84
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.41 E-value=1.9e-13 Score=106.44 Aligned_cols=85 Identities=18% Similarity=0.363 Sum_probs=74.6
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEE---EecCC-CCHHHHHHHhhhcCCCC--C
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVI---NYDMP-GNIEMYTHRIGRTGRAG--K 74 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi---~~d~p-~~~~~~~qr~GR~gR~~--~ 74 (135)
.|+++.+||+||+..+|+.+..+|.++++.++|+|-+++.|+|||.-.+|+ -.+.- .++.+|.||.|||||.+ .
T Consensus 463 kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHd 542 (830)
T COG1202 463 KGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHD 542 (830)
T ss_pred CCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCccc
Confidence 478999999999999999999999999999999999999999999876554 23333 48999999999999976 4
Q ss_pred CceEEEEeecC
Q 037139 75 TGVATTFLTFH 85 (135)
Q Consensus 75 ~g~~~~~~~~~ 85 (135)
.|.+++++.+.
T Consensus 543 rGkVyllvepg 553 (830)
T COG1202 543 RGKVYLLVEPG 553 (830)
T ss_pred CceEEEEecCC
Confidence 69999999865
No 85
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.40 E-value=9.6e-14 Score=99.05 Aligned_cols=78 Identities=40% Similarity=0.694 Sum_probs=70.6
Q ss_pred EEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEEeecC-ChhHHHHHHHHHhhCCCCCChHHH
Q 037139 32 LVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFH-DTDVFYDLKQMLIQSNSPVPPELA 109 (135)
Q Consensus 32 lv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 109 (135)
+|+|+++++|+|+..+++++|||+|.+..+|.+|+|||||.|..|.++.|++.. +...+..+.+.+.....++|+.+.
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpdeid 380 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDEID 380 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcccc
Confidence 899999999999999999999999999999999999999999999999999865 556678888888888888888754
No 86
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.37 E-value=3.2e-13 Score=101.16 Aligned_cols=87 Identities=31% Similarity=0.474 Sum_probs=81.7
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHH----------------
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTH---------------- 64 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~q---------------- 64 (135)
+|+.+..+|+.|.|+++.-+-+.|-.|+++|+|+|-++++|+|-|+|++||+-.+|.+.++|.|
T Consensus 340 ~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknks 419 (695)
T KOG0353|consen 340 HGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKS 419 (695)
T ss_pred cCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccc
Confidence 4788899999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------------HhhhcCCCCCCceEEEEeecCCh
Q 037139 65 ---------------------------RIGRTGRAGKTGVATTFLTFHDT 87 (135)
Q Consensus 65 ---------------------------r~GR~gR~~~~g~~~~~~~~~~~ 87 (135)
-.||+||.+.+..|++++.-.+.
T Consensus 420 dtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 420 DTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred cCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 67999999999999999876544
No 87
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.36 E-value=7.3e-12 Score=96.90 Aligned_cols=116 Identities=20% Similarity=0.316 Sum_probs=94.8
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEec-----CCCCHHHHHHHhhhcCCCCCC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYD-----MPGNIEMYTHRIGRTGRAGKT 75 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d-----~p~~~~~~~qr~GR~gR~~~~ 75 (135)
+|+++..+|++...-+|.+++++++.|+++|||+-+.+-+|+|+|.|++|..+| ...|..+++|-+|||.|.- .
T Consensus 469 ~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~-~ 547 (663)
T COG0556 469 LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-N 547 (663)
T ss_pred cCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhcc-C
Confidence 589999999999999999999999999999999999999999999999998877 4458999999999999974 6
Q ss_pred ceEEEEeecCChhH---------HHHHHHHHhhCCCCCChHHHHHHHhhCC
Q 037139 76 GVATTFLTFHDTDV---------FYDLKQMLIQSNSPVPPELAKHEASKFK 117 (135)
Q Consensus 76 g~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 117 (135)
|.++++...-..+. -+.+...++......|+.+.+...+...
T Consensus 548 GkvIlYAD~iT~sM~~Ai~ET~RRR~iQ~~yN~~hgItP~ti~K~i~d~l~ 598 (663)
T COG0556 548 GKVILYADKITDSMQKAIDETERRREIQMAYNEEHGITPQTIKKKIRDILD 598 (663)
T ss_pred CeEEEEchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhhh
Confidence 88999887654433 3344445666777777777665544433
No 88
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.34 E-value=8.6e-12 Score=96.56 Aligned_cols=67 Identities=37% Similarity=0.595 Sum_probs=65.2
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCC
Q 037139 5 VTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGR 71 (135)
Q Consensus 5 v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR 71 (135)
+..+.|+.++.+|.++++.|+.|++++|+++.++.+|+|+|+++++|...+..|...|.||+||.-|
T Consensus 309 ~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 309 VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 5689999999999999999999999999999999999999999999999999999999999999999
No 89
>PRK09401 reverse gyrase; Reviewed
Probab=99.33 E-value=4.8e-12 Score=107.05 Aligned_cols=52 Identities=35% Similarity=0.523 Sum_probs=47.3
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEe----cCCCcccccccC-CcEEEEecCCC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVA----TDVAGRGIDIPD-VAHVINYDMPG 57 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~----T~~~~~G~d~~~-v~~vi~~d~p~ 57 (135)
.|+++..+||+| ++.+++|++|+++|||| |++++||+|+|+ +++|||||+|.
T Consensus 354 ~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 354 LGINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred CCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 488999999999 23459999999999999 699999999999 89999999997
No 90
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.33 E-value=1.6e-11 Score=102.45 Aligned_cols=85 Identities=26% Similarity=0.395 Sum_probs=73.7
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCC---CcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCc-
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKR---YNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTG- 76 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~---~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g- 76 (135)
.|+....++|+++..+|..+++.|+... .-+|++|.+++.|+|+..+++||+||++|++....|+.||+.|.|+..
T Consensus 510 ~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~ 589 (1033)
T PLN03142 510 RGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKE 589 (1033)
T ss_pred cCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCce
Confidence 3678889999999999999999997643 346899999999999999999999999999999999999999999764
Q ss_pred -eEEEEeecC
Q 037139 77 -VATTFLTFH 85 (135)
Q Consensus 77 -~~~~~~~~~ 85 (135)
.++.++...
T Consensus 590 V~VyRLIt~g 599 (1033)
T PLN03142 590 VQVFRFCTEY 599 (1033)
T ss_pred EEEEEEEeCC
Confidence 445555554
No 91
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.33 E-value=4.7e-12 Score=98.24 Aligned_cols=96 Identities=26% Similarity=0.435 Sum_probs=74.8
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhc--CCCcEEEecCCCcccccccCCcEEEEecC---------CCCHHHHHHHhhhcCC
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRT--KRYNVLVATDVAGRGIDIPDVAHVINYDM---------PGNIEMYTHRIGRTGR 71 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~--g~~~ilv~T~~~~~G~d~~~v~~vi~~d~---------p~~~~~~~qr~GR~gR 71 (135)
.++++|+|+++|+.|.+-...|++ ++.+||||||++++|+|+ +++-||.+++ |.+..+..|-+|||||
T Consensus 382 ~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGR 460 (700)
T KOG0953|consen 382 HKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGR 460 (700)
T ss_pred cceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccc
Confidence 458999999999999999999987 899999999999999998 5666776663 3467889999999999
Q ss_pred CCC---CceEEEEeecCChhHHHHHHHHHhhCCCC
Q 037139 72 AGK---TGVATTFLTFHDTDVFYDLKQMLIQSNSP 103 (135)
Q Consensus 72 ~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (135)
.|. .|.+.++. ...+..+.+.++.+..+
T Consensus 461 f~s~~~~G~vTtl~----~eDL~~L~~~l~~p~ep 491 (700)
T KOG0953|consen 461 FGSKYPQGEVTTLH----SEDLKLLKRILKRPVEP 491 (700)
T ss_pred cccCCcCceEEEee----HhhHHHHHHHHhCCchH
Confidence 864 35555443 34455666666655444
No 92
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.33 E-value=3.7e-12 Score=103.47 Aligned_cols=103 Identities=26% Similarity=0.370 Sum_probs=84.1
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEE---ec-CCCCHHHHHHHhhhcCCCCC--Cc
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN---YD-MPGNIEMYTHRIGRTGRAGK--TG 76 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~---~d-~p~~~~~~~qr~GR~gR~~~--~g 76 (135)
+.+++||+|++.++|+.+...|++|.+.|++||+.++.|+|+|..++++- +. .+.+..+|.||+|||||.|. .|
T Consensus 523 ~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~G 602 (1008)
T KOG0950|consen 523 YGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLG 602 (1008)
T ss_pred ccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCc
Confidence 46889999999999999999999999999999999999999999998884 33 33478899999999999874 58
Q ss_pred eEEEEeecCChhHHHHHHHHHhhCCCCCChHH
Q 037139 77 VATTFLTFHDTDVFYDLKQMLIQSNSPVPPEL 108 (135)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 108 (135)
.+++++...+...+. +++.....++..-+
T Consensus 603 dsiLI~k~~e~~~~~---~lv~~~~~~~~S~l 631 (1008)
T KOG0950|consen 603 DSILIIKSSEKKRVR---ELVNSPLKPLNSCL 631 (1008)
T ss_pred ceEEEeeccchhHHH---HHHhcccccccccc
Confidence 899999888876655 44455544444443
No 93
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.30 E-value=4.7e-12 Score=95.62 Aligned_cols=60 Identities=22% Similarity=0.484 Sum_probs=52.1
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcC
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTG 70 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~g 70 (135)
++.+..+||.+++.+|.++ ++.+|||||+++++|+|+|.+ +|| ++ |.+.+.|+||+||+|
T Consensus 298 ~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 298 GDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 3578889999999998754 478999999999999999987 555 55 899999999999987
No 94
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.24 E-value=2e-11 Score=99.45 Aligned_cols=82 Identities=27% Similarity=0.314 Sum_probs=68.5
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEE----ec----CCCCHHHHHHHhhhcCCCCC-
Q 037139 4 RVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN----YD----MPGNIEMYTHRIGRTGRAGK- 74 (135)
Q Consensus 4 ~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~----~d----~p~~~~~~~qr~GR~gR~~~- 74 (135)
.+++||||+-|=-++-+.-.|..|-++||+||.++++|+|.|.-.+|+. .| .-..+.+|.||+|||||.|-
T Consensus 632 GiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD 711 (1248)
T KOG0947|consen 632 GIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLD 711 (1248)
T ss_pred cchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccC
Confidence 3567999999999999999999999999999999999999998766652 11 12357899999999999874
Q ss_pred -CceEEEEeecC
Q 037139 75 -TGVATTFLTFH 85 (135)
Q Consensus 75 -~g~~~~~~~~~ 85 (135)
.|.+++++...
T Consensus 712 ~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 712 ETGTVIIMCKDS 723 (1248)
T ss_pred cCceEEEEecCC
Confidence 58888877654
No 95
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.24 E-value=2.5e-11 Score=102.78 Aligned_cols=53 Identities=25% Similarity=0.442 Sum_probs=48.3
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEe----cCCCcccccccC-CcEEEEecCCC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVA----TDVAGRGIDIPD-VAHVINYDMPG 57 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~----T~~~~~G~d~~~-v~~vi~~d~p~ 57 (135)
.|+++..+||+|+ +.++++|++|+++|||| |++++||+|+|+ |++||+||+|.
T Consensus 352 ~g~~a~~lhg~~~----~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 352 HGVKAVAYHATKP----KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred CCceEEEEeCCCC----HHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 3789999999997 37899999999999999 599999999999 89999999884
No 96
>PRK09694 helicase Cas3; Provisional
Probab=99.24 E-value=2.4e-10 Score=94.41 Aligned_cols=69 Identities=25% Similarity=0.461 Sum_probs=59.5
Q ss_pred ceEEEecCCCCHHHH----HHHHHHH-hcCC---CcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCC
Q 037139 3 YRVTTLHGGKSQEQR----EISLEGF-RTKR---YNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGK 74 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r----~~~~~~f-~~g~---~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~ 74 (135)
..+..+||.+++.+| +++++.| ++|+ ..|||||+++++|+|+ +++++|....| .+.++||+||++|.+.
T Consensus 588 ~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 588 VDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 578999999999999 4677788 6666 4799999999999999 57989988777 6799999999999764
No 97
>PRK14701 reverse gyrase; Provisional
Probab=99.23 E-value=6.6e-12 Score=108.61 Aligned_cols=74 Identities=15% Similarity=0.358 Sum_probs=64.9
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEec----CCCcccccccC-CcEEEEecCCC---CHHHHHHHh------
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT----DVAGRGIDIPD-VAHVINYDMPG---NIEMYTHRI------ 66 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T----~~~~~G~d~~~-v~~vi~~d~p~---~~~~~~qr~------ 66 (135)
.|+++..+||+ |..++++|++|+++||||| ++++||+|+|+ |++||+||+|. +.+.|.|-.
T Consensus 356 ~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~ 430 (1638)
T PRK14701 356 DGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGL 430 (1638)
T ss_pred CCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcc
Confidence 48899999995 8999999999999999999 58999999999 99999999999 777665544
Q ss_pred -------hhcCCCCCCceEE
Q 037139 67 -------GRTGRAGKTGVAT 79 (135)
Q Consensus 67 -------GR~gR~~~~g~~~ 79 (135)
||+||.|.++.++
T Consensus 431 ~~~~~~~~~a~~~g~~~~~~ 450 (1638)
T PRK14701 431 LSEILKIEEELKEGIPIEGV 450 (1638)
T ss_pred hHHHHHhhhhcccCCcchhH
Confidence 9999998776555
No 98
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.20 E-value=4.5e-11 Score=99.56 Aligned_cols=83 Identities=24% Similarity=0.353 Sum_probs=69.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEE----EecC------CCCHHHHHHHhhhcCC
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVI----NYDM------PGNIEMYTHRIGRTGR 71 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi----~~d~------p~~~~~~~qr~GR~gR 71 (135)
.+.+++||+||+..+|..+.+.|+.|.+++|++|-.+++|+|+|.-.++| .||+ +.++.+..||.|||||
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragr 686 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGR 686 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCC
Confidence 45688999999999999999999999999999999999999999988887 4663 3478999999999999
Q ss_pred CCC--CceEEEEeec
Q 037139 72 AGK--TGVATTFLTF 84 (135)
Q Consensus 72 ~~~--~g~~~~~~~~ 84 (135)
.+. .|..++....
T Consensus 687 p~~D~~gegiiit~~ 701 (1674)
T KOG0951|consen 687 PQYDTCGEGIIITDH 701 (1674)
T ss_pred CccCcCCceeeccCc
Confidence 754 3555544433
No 99
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.16 E-value=7.3e-11 Score=92.40 Aligned_cols=119 Identities=19% Similarity=0.256 Sum_probs=92.8
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEEeecC
Q 037139 6 TTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFH 85 (135)
Q Consensus 6 ~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~~~~~ 85 (135)
..+.||.+.++|.++...+--|+..-+|+|++++.|+|+...+.|++.+.|.|..++.|..|||||.++++.++.+....
T Consensus 561 ~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~ 640 (1034)
T KOG4150|consen 561 TSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLG 640 (1034)
T ss_pred HhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEecc
Confidence 34679999999999999999999999999999999999999999999999999999999999999999887766655543
Q ss_pred --ChhHHHHHHHHHhhCCCCCChHHHHH--HHhhCCCCCCCCC
Q 037139 86 --DTDVFYDLKQMLIQSNSPVPPELAKH--EASKFKPGTIPDR 124 (135)
Q Consensus 86 --~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~ 124 (135)
+...+.....++..++.++.-++.+. .++.++...+..+
T Consensus 641 PVDQ~Y~~HP~~l~~~pN~EL~LD~~N~~iL~~HlQCAA~ELP 683 (1034)
T KOG4150|consen 641 PVDQYYMSHPDKLFGSPNEELHLDSQNKHVLMQHLQCAALELP 683 (1034)
T ss_pred chhhHhhcCcHHHhCCCcceeEEecccHHHHHHHHhHHhhcCc
Confidence 44445555666667766655554432 3344444444433
No 100
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.16 E-value=1.8e-11 Score=97.86 Aligned_cols=103 Identities=23% Similarity=0.296 Sum_probs=78.4
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEE----EecCC----CCHHHHHHHhhhcCCCCC-
Q 037139 4 RVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVI----NYDMP----GNIEMYTHRIGRTGRAGK- 74 (135)
Q Consensus 4 ~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi----~~d~p----~~~~~~~qr~GR~gR~~~- 74 (135)
.+++||+|+-|--++.+.-.|+.|-+++|+||.+++.|+|.|.-.+|+ -||.- .+.-+|+||.|||||.|.
T Consensus 448 GIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~D 527 (1041)
T KOG0948|consen 448 GIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGID 527 (1041)
T ss_pred ccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCC
Confidence 356799999999999999999999999999999999999999977665 24422 267899999999999885
Q ss_pred -CceEEEEeecCChhHHHHHHHHHhhCCCCCChHH
Q 037139 75 -TGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPEL 108 (135)
Q Consensus 75 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 108 (135)
.|.+|++++..-.. ...+.+++....++..++
T Consensus 528 drGivIlmiDekm~~--~~ak~m~kG~aD~LnSaF 560 (1041)
T KOG0948|consen 528 DRGIVILMIDEKMEP--QVAKDMLKGSADPLNSAF 560 (1041)
T ss_pred CCceEEEEecCcCCH--HHHHHHhcCCCcchhhhh
Confidence 58888888754221 223344444444444443
No 101
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.15 E-value=3.4e-10 Score=83.86 Aligned_cols=89 Identities=21% Similarity=0.319 Sum_probs=68.4
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEE-ec-CCCCHHHHHHHhhhcCCCCC--CceEE
Q 037139 4 RVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN-YD-MPGNIEMYTHRIGRTGRAGK--TGVAT 79 (135)
Q Consensus 4 ~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~-~d-~p~~~~~~~qr~GR~gR~~~--~g~~~ 79 (135)
.++++|+. .+.|.+..++|++|++++||+|.++++|+.+|+|++.+. .. .-.+.+.++|.+||+||.-. .|.++
T Consensus 333 ~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~ 410 (441)
T COG4098 333 TIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVL 410 (441)
T ss_pred ceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEE
Confidence 35677866 678899999999999999999999999999999997653 32 23578899999999999543 36666
Q ss_pred EEeecCChhHHHHHH
Q 037139 80 TFLTFHDTDVFYDLK 94 (135)
Q Consensus 80 ~~~~~~~~~~~~~~~ 94 (135)
.|-...........+
T Consensus 411 FFH~G~skaM~~A~k 425 (441)
T COG4098 411 FFHYGKSKAMKQARK 425 (441)
T ss_pred EEeccchHHHHHHHH
Confidence 665555555544443
No 102
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.14 E-value=8.5e-11 Score=96.97 Aligned_cols=81 Identities=30% Similarity=0.483 Sum_probs=75.2
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCC-CHHHHHHHhhhcCCCCCCceEEEE
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPG-NIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~-~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
..+..++|+|.+.+|.++...|+.|++.++++|.+++-|+|+..++.||.+..|. +..++.||.||+||.++.+..+..
T Consensus 339 ~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v 418 (851)
T COG1205 339 DAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVV 418 (851)
T ss_pred hheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEE
Confidence 4578899999999999999999999999999999999999999999999999999 899999999999999877666666
Q ss_pred ee
Q 037139 82 LT 83 (135)
Q Consensus 82 ~~ 83 (135)
..
T Consensus 419 ~~ 420 (851)
T COG1205 419 LR 420 (851)
T ss_pred eC
Confidence 65
No 103
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.10 E-value=2.4e-10 Score=94.01 Aligned_cols=111 Identities=22% Similarity=0.364 Sum_probs=81.4
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEE----EecCCC------CHHHHHHHhhhcCCC-
Q 037139 4 RVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVI----NYDMPG------NIEMYTHRIGRTGRA- 72 (135)
Q Consensus 4 ~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi----~~d~p~------~~~~~~qr~GR~gR~- 72 (135)
..+++|+||...+|..+.+.|..|.++||+||..+++|+|+|+--.+| .||.-. +.-+.+|..|||||.
T Consensus 398 g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPq 477 (1230)
T KOG0952|consen 398 GMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQ 477 (1230)
T ss_pred hhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCC
Confidence 356799999999999999999999999999999999999999866666 355443 456779999999995
Q ss_pred -CCCceEEEEeecCChhHHHHHHHHHhhCCCCCChHHHHHHHhhCCC
Q 037139 73 -GKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKP 118 (135)
Q Consensus 73 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 118 (135)
+..|.++++.+.+-.+.+..+ -....++...+-....+.+..
T Consensus 478 Fd~~G~giIiTt~dkl~~Y~sL----l~~~~piES~~~~~L~dnLnA 520 (1230)
T KOG0952|consen 478 FDSSGEGIIITTRDKLDHYESL----LTGQNPIESQLLPCLIDNLNA 520 (1230)
T ss_pred CCCCceEEEEecccHHHHHHHH----HcCCChhHHHHHHHHHHhhhh
Confidence 466888888776544443332 233444444544444444443
No 104
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.06 E-value=8.2e-10 Score=93.38 Aligned_cols=67 Identities=22% Similarity=0.477 Sum_probs=60.8
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCC-cEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCC
Q 037139 4 RVTTLHGGKSQEQREISLEGFRTKRY-NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA 72 (135)
Q Consensus 4 ~v~~~hg~~~~~~r~~~~~~f~~g~~-~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~ 72 (135)
.+..+||+++ ++..++++|++++. +|+|+++++.+|+|+|.|.+||.++++.|...|+||+||+.|.
T Consensus 733 ~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 733 AVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred ceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccC
Confidence 4566888875 46789999999987 6899999999999999999999999999999999999999995
No 105
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.04 E-value=8.7e-10 Score=90.39 Aligned_cols=80 Identities=26% Similarity=0.319 Sum_probs=66.7
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEec-CCCCHHHHHHHhhhcCCCCCC--ceEEEE
Q 037139 5 VTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYD-MPGNIEMYTHRIGRTGRAGKT--GVATTF 81 (135)
Q Consensus 5 v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d-~p~~~~~~~qr~GR~gR~~~~--g~~~~~ 81 (135)
++++|++|....|..+.=.||.|...||++|.+++-|+|.|--.+|+--| +-.++-.|.|++|||||.|-+ |.++.+
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~Fm 1044 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFM 1044 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEE
Confidence 56799999999999999999999999999999999999999766555444 335788999999999998753 666555
Q ss_pred eec
Q 037139 82 LTF 84 (135)
Q Consensus 82 ~~~ 84 (135)
-.+
T Consensus 1045 giP 1047 (1330)
T KOG0949|consen 1045 GIP 1047 (1330)
T ss_pred eCc
Confidence 443
No 106
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.02 E-value=1.5e-10 Score=91.40 Aligned_cols=82 Identities=22% Similarity=0.387 Sum_probs=73.0
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEE--------ec----------CCCCHHHHHHHh
Q 037139 5 VTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN--------YD----------MPGNIEMYTHRI 66 (135)
Q Consensus 5 v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~--------~d----------~p~~~~~~~qr~ 66 (135)
+.++||.|+.+++.++++.--.|.-+|+++|++++..+.+|.+.+||+ |+ .|-|..+-.||.
T Consensus 293 ~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRa 372 (674)
T KOG0922|consen 293 ILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRA 372 (674)
T ss_pred eeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhc
Confidence 467999999999999999999999999999999999999999999984 33 355788899999
Q ss_pred hhcCCCCCCceEEEEeecCCh
Q 037139 67 GRTGRAGKTGVATTFLTFHDT 87 (135)
Q Consensus 67 GR~gR~~~~g~~~~~~~~~~~ 87 (135)
|||||.+ +|.|+-++...+.
T Consensus 373 GRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 373 GRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred ccCCCCC-CceEEEeeeHHHH
Confidence 9999986 8999999987654
No 107
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.01 E-value=7.1e-10 Score=92.05 Aligned_cols=100 Identities=22% Similarity=0.292 Sum_probs=75.5
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEE----Eec----CCCCHHHHHHHhhhcCCCCCC-
Q 037139 5 VTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVI----NYD----MPGNIEMYTHRIGRTGRAGKT- 75 (135)
Q Consensus 5 v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi----~~d----~p~~~~~~~qr~GR~gR~~~~- 75 (135)
+++||++|-|..+..+...|..|.++|+++|.+++.|+|.|.-.+|+ .+| .+.++.+|.|+.|||||.|.+
T Consensus 447 iavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~ 526 (1041)
T COG4581 447 IAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDV 526 (1041)
T ss_pred hhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccc
Confidence 44799999999999999999999999999999999999999877765 333 445799999999999998864
Q ss_pred -ceEEEEeecCChhHHHHHHHHHhhCCCCCC
Q 037139 76 -GVATTFLTFHDTDVFYDLKQMLIQSNSPVP 105 (135)
Q Consensus 76 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (135)
|.+++...+...+ ......+.......+.
T Consensus 527 ~G~vI~~~~~~~~~-~~e~~~l~~~~~~~L~ 556 (1041)
T COG4581 527 LGTVIVIEPPFESE-PSEAAGLASGKLDPLR 556 (1041)
T ss_pred cceEEEecCCCCCC-hHHHHHhhcCCCccch
Confidence 6666664443332 3333344444433333
No 108
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.01 E-value=2.9e-10 Score=93.20 Aligned_cols=82 Identities=26% Similarity=0.385 Sum_probs=72.4
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEec------------------CCCCHHHHHH
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYD------------------MPGNIEMYTH 64 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d------------------~p~~~~~~~q 64 (135)
+.+.++||.|+.+++.++++--..|+-+|+++|++++.++.+|+|.+||.-+ .|.|..+..|
T Consensus 288 ~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~Q 367 (845)
T COG1643 288 LEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQ 367 (845)
T ss_pred cEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhh
Confidence 6789999999999999999888888778999999999999999999999443 3446788899
Q ss_pred HhhhcCCCCCCceEEEEeecC
Q 037139 65 RIGRTGRAGKTGVATTFLTFH 85 (135)
Q Consensus 65 r~GR~gR~~~~g~~~~~~~~~ 85 (135)
|.|||||.+ +|.|+-+++..
T Consensus 368 RaGRAGR~~-pGicyRLyse~ 387 (845)
T COG1643 368 RAGRAGRTG-PGICYRLYSEE 387 (845)
T ss_pred hccccccCC-CceEEEecCHH
Confidence 999999985 89999999864
No 109
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.97 E-value=3.3e-09 Score=86.86 Aligned_cols=85 Identities=28% Similarity=0.410 Sum_probs=75.7
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCC---------------------------------
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV--------------------------------- 47 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v--------------------------------- 47 (135)
.|+++..+|+. +.+|+..+.+|+.+..+|+|||++++||+|++--
T Consensus 453 ~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 530 (830)
T PRK12904 453 AGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEV 530 (830)
T ss_pred CCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhH
Confidence 37889999996 7899999999999999999999999999999753
Q ss_pred -----cEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEEeecCCh
Q 037139 48 -----AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 87 (135)
Q Consensus 48 -----~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~~~~~~~ 87 (135)
=+||-...|.|..--.|..||+||.|.+|.+-.+++-.|.
T Consensus 531 ~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 531 LEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred HHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 1678888999999999999999999999999988887655
No 110
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.95 E-value=3.7e-09 Score=86.90 Aligned_cols=85 Identities=26% Similarity=0.368 Sum_probs=74.9
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCC---------------------------------
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV--------------------------------- 47 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v--------------------------------- 47 (135)
.|++...+|+.+.+++++.+.++|+.| .|+|||++++||+|+.=-
T Consensus 467 ~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 544 (896)
T PRK13104 467 ENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEV 544 (896)
T ss_pred cCCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHH
Confidence 378899999999999999999999999 499999999999998521
Q ss_pred -----cEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEEeecCCh
Q 037139 48 -----AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 87 (135)
Q Consensus 48 -----~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~~~~~~~ 87 (135)
=+||-...+.|..-=.|..||+||.|.+|.+-.|++-.|.
T Consensus 545 ~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 545 IAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 1677788888988889999999999999999888887655
No 111
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.95 E-value=9.2e-09 Score=83.46 Aligned_cols=87 Identities=23% Similarity=0.339 Sum_probs=75.0
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCC--cE-EEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCC--
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRY--NV-LVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKT-- 75 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~--~i-lv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~-- 75 (135)
+|+.+..+||.|+..+|+.+++.|++..- .| |.+|.+.+.|+|+-..+.||.||+.|+++.=.|.++|+.|.|+.
T Consensus 618 ~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~ 697 (776)
T KOG0390|consen 618 RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKP 697 (776)
T ss_pred cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcce
Confidence 47899999999999999999999987543 34 46778999999999999999999999999999999999999975
Q ss_pred ceEEEEeecCCh
Q 037139 76 GVATTFLTFHDT 87 (135)
Q Consensus 76 g~~~~~~~~~~~ 87 (135)
.++|.++..+..
T Consensus 698 v~iYrLlatGti 709 (776)
T KOG0390|consen 698 VYIYRLLATGTI 709 (776)
T ss_pred EEEEEeecCCCc
Confidence 566667766533
No 112
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.94 E-value=4.3e-10 Score=89.47 Aligned_cols=83 Identities=22% Similarity=0.306 Sum_probs=74.9
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEec------------------CCCCHHHHH
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYD------------------MPGNIEMYT 63 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d------------------~p~~~~~~~ 63 (135)
++.|.++++.|+.+-+.++++.-..|..+++|+|++++..+.+|++.+||..+ .|.|..+-.
T Consensus 597 ~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~ 676 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANAD 676 (1042)
T ss_pred ceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccch
Confidence 67899999999999999999999999999999999999999999999999544 456778889
Q ss_pred HHhhhcCCCCCCceEEEEeecC
Q 037139 64 HRIGRTGRAGKTGVATTFLTFH 85 (135)
Q Consensus 64 qr~GR~gR~~~~g~~~~~~~~~ 85 (135)
||.|||||.| +|.|+-+++..
T Consensus 677 QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 677 QRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred hhccccCCCC-Ccceeeehhhh
Confidence 9999999986 89999998763
No 113
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.93 E-value=3.6e-09 Score=86.85 Aligned_cols=85 Identities=27% Similarity=0.376 Sum_probs=75.5
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCC---------------------------------
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV--------------------------------- 47 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v--------------------------------- 47 (135)
.|+++..+|+.+++.++..+.++|+.|. |+|||++++||+|+.=-
T Consensus 472 ~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 549 (908)
T PRK13107 472 EKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVV 549 (908)
T ss_pred CCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHH
Confidence 3788899999999999999999999998 99999999999999521
Q ss_pred ----cEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEEeecCCh
Q 037139 48 ----AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 87 (135)
Q Consensus 48 ----~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~~~~~~~ 87 (135)
=+||-...+.|..-=.|..||+||.|.+|.+..+++-.|.
T Consensus 550 ~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 550 AAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 2678888899988889999999999999999988887655
No 114
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.92 E-value=1.1e-09 Score=86.96 Aligned_cols=81 Identities=23% Similarity=0.285 Sum_probs=72.2
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEec------------------CCCCHHHHHH
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYD------------------MPGNIEMYTH 64 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d------------------~p~~~~~~~q 64 (135)
+-+.++|++++.+.+.++++---.|..+|++||++++..+.++++.+||.-+ .|-|..+..|
T Consensus 507 liv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~Q 586 (902)
T KOG0923|consen 507 LIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQ 586 (902)
T ss_pred EEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhh
Confidence 4478899999999999999999999999999999999999999999999433 3456788899
Q ss_pred HhhhcCCCCCCceEEEEeec
Q 037139 65 RIGRTGRAGKTGVATTFLTF 84 (135)
Q Consensus 65 r~GR~gR~~~~g~~~~~~~~ 84 (135)
|.|||||.| +|.|+-+++.
T Consensus 587 RaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 587 RAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred hccccCCCC-CCceEEeech
Confidence 999999997 8999999874
No 115
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.86 E-value=1.9e-08 Score=81.59 Aligned_cols=85 Identities=25% Similarity=0.378 Sum_probs=66.0
Q ss_pred ceEEEecCCCCHH--HHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCC------------CHHHHHHHhhh
Q 037139 3 YRVTTLHGGKSQE--QREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPG------------NIEMYTHRIGR 68 (135)
Q Consensus 3 ~~v~~~hg~~~~~--~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~------------~~~~~~qr~GR 68 (135)
.+++.+-++.+.. .-+..++.|.+|+++|||+|+++++|.|+|++.+|...|... ....+.|-.||
T Consensus 507 ~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGR 586 (730)
T COG1198 507 ARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGR 586 (730)
T ss_pred CcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhh
Confidence 4566666665443 356889999999999999999999999999999986544222 24556999999
Q ss_pred cCCCCCCceEEEEeecCCh
Q 037139 69 TGRAGKTGVATTFLTFHDT 87 (135)
Q Consensus 69 ~gR~~~~g~~~~~~~~~~~ 87 (135)
|||.+.+|.+++-....+.
T Consensus 587 AgR~~~~G~VvIQT~~P~h 605 (730)
T COG1198 587 AGRAGKPGEVVIQTYNPDH 605 (730)
T ss_pred hccCCCCCeEEEEeCCCCc
Confidence 9999889888877765543
No 116
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.86 E-value=3.1e-10 Score=93.17 Aligned_cols=84 Identities=25% Similarity=0.398 Sum_probs=72.6
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEE--------ecCCC----------CHHHHHH
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN--------YDMPG----------NIEMYTH 64 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~--------~d~p~----------~~~~~~q 64 (135)
+-+.++|+.|+..+++.++...-.|..+|+++|++++..+.+++|-+||. ||+-. +..+-.|
T Consensus 445 ~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~Q 524 (924)
T KOG0920|consen 445 FAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQ 524 (924)
T ss_pred eEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHH
Confidence 56889999999999999999999999999999999999999999999994 55333 3555699
Q ss_pred HhhhcCCCCCCceEEEEeecCCh
Q 037139 65 RIGRTGRAGKTGVATTFLTFHDT 87 (135)
Q Consensus 65 r~GR~gR~~~~g~~~~~~~~~~~ 87 (135)
|.|||||. .+|.|+.++.....
T Consensus 525 R~GRAGRv-~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 525 RRGRAGRV-RPGICYHLYTRSRY 546 (924)
T ss_pred hcccccCc-cCCeeEEeechhhh
Confidence 99999998 48999999886533
No 117
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=1.3e-09 Score=87.93 Aligned_cols=82 Identities=26% Similarity=0.333 Sum_probs=70.7
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEE--------ecCCC----------CHHHHHH
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN--------YDMPG----------NIEMYTH 64 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~--------~d~p~----------~~~~~~q 64 (135)
+.|.++|+-++.+++.++++.--.|..=++|+|++++..+.+|++.+||. ||.-. |..+--|
T Consensus 605 LyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQ 684 (1172)
T KOG0926|consen 605 LYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQ 684 (1172)
T ss_pred eEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccch
Confidence 46889999999999999999999999889999999999999999999995 44333 3344589
Q ss_pred HhhhcCCCCCCceEEEEeecC
Q 037139 65 RIGRTGRAGKTGVATTFLTFH 85 (135)
Q Consensus 65 r~GR~gR~~~~g~~~~~~~~~ 85 (135)
|+|||||.| +|+|+.+++..
T Consensus 685 RAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 685 RAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred hccccCCCC-CCceeehhhhH
Confidence 999999997 89999998753
No 118
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.62 E-value=1.6e-07 Score=77.10 Aligned_cols=79 Identities=25% Similarity=0.335 Sum_probs=63.7
Q ss_pred eEEEecCCCCHHHHHHHHHHHh----cCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCC--CCce
Q 037139 4 RVTTLHGGKSQEQREISLEGFR----TKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG--KTGV 77 (135)
Q Consensus 4 ~v~~~hg~~~~~~r~~~~~~f~----~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~--~~g~ 77 (135)
.+..+||.++..+|.+.++.+. .+...|+|||++++.|+|+. .+++|-= +..+.+.+||.||+.|.| ..|.
T Consensus 466 ~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~ 542 (733)
T COG1203 466 KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITE--LAPIDSLIQRAGRVNRHGKKENGK 542 (733)
T ss_pred CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeec--CCCHHHHHHHHHHHhhcccccCCc
Confidence 4789999999999998888665 46788999999999999985 5555432 455778999999999998 5677
Q ss_pred EEEEeecC
Q 037139 78 ATTFLTFH 85 (135)
Q Consensus 78 ~~~~~~~~ 85 (135)
++.+....
T Consensus 543 ~~v~~~~~ 550 (733)
T COG1203 543 IYVYNDEE 550 (733)
T ss_pred eeEeeccc
Confidence 77776644
No 119
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.43 E-value=2e-06 Score=69.69 Aligned_cols=85 Identities=29% Similarity=0.431 Sum_probs=72.8
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCC---cEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCc-
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRY---NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTG- 76 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~---~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g- 76 (135)
+||...-+-|+++.++|...++.|..... =.|++|.+.+.|+|+-.+++||.||..|++..=.|..-||-|.|+..
T Consensus 510 R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~ 589 (971)
T KOG0385|consen 510 RGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKP 589 (971)
T ss_pred cCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCc
Confidence 46777889999999999999999987552 25689999999999999999999999999999999999999988754
Q ss_pred -eEEEEeecC
Q 037139 77 -VATTFLTFH 85 (135)
Q Consensus 77 -~~~~~~~~~ 85 (135)
.++.+++..
T Consensus 590 V~V~RLiten 599 (971)
T KOG0385|consen 590 VVVYRLITEN 599 (971)
T ss_pred eEEEEEeccc
Confidence 455556554
No 120
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.35 E-value=3.1e-06 Score=68.73 Aligned_cols=84 Identities=23% Similarity=0.321 Sum_probs=72.7
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCc--EEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCc--e
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYN--VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTG--V 77 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~--ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g--~ 77 (135)
|+...-+.|..+...|...++.|++++.- .|++|.+.+.|+|+-.++-||.||+-|+++.=.|..-||.|.|+.- .
T Consensus 571 ~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~ 650 (923)
T KOG0387|consen 571 GYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVV 650 (923)
T ss_pred CceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceE
Confidence 67788889999999999999999977544 4578999999999999999999999999999999999999999753 4
Q ss_pred EEEEeecC
Q 037139 78 ATTFLTFH 85 (135)
Q Consensus 78 ~~~~~~~~ 85 (135)
++-++...
T Consensus 651 VYRL~t~g 658 (923)
T KOG0387|consen 651 VYRLMTAG 658 (923)
T ss_pred EEEEecCC
Confidence 55556554
No 121
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.29 E-value=2.9e-06 Score=71.46 Aligned_cols=85 Identities=24% Similarity=0.327 Sum_probs=74.0
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCC---cEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCc-
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRY---NVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTG- 76 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~---~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g- 76 (135)
+||...-+-|++.-+-|+++++.|..-.. =.|+||.+.+.|||+-.++.||.||..|++..=+|...||-|.|+..
T Consensus 722 r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~ 801 (1373)
T KOG0384|consen 722 RGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKH 801 (1373)
T ss_pred cCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccce
Confidence 36777788899999999999999986543 47899999999999999999999999999999999999999998764
Q ss_pred -eEEEEeecC
Q 037139 77 -VATTFLTFH 85 (135)
Q Consensus 77 -~~~~~~~~~ 85 (135)
.+|-|++..
T Consensus 802 VnVYRLVTk~ 811 (1373)
T KOG0384|consen 802 VNVYRLVTKN 811 (1373)
T ss_pred EEEEEEecCC
Confidence 466677665
No 122
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.12 E-value=2.7e-05 Score=64.52 Aligned_cols=84 Identities=20% Similarity=0.320 Sum_probs=69.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcC-CCc-EEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCce--
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTK-RYN-VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGV-- 77 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g-~~~-ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~-- 77 (135)
++....++|+++.+.|..+++.|.++ ... +++++.+.+.|+|+-..+.||.+|+.|++....|...|+-|.|+...
T Consensus 735 ~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~ 814 (866)
T COG0553 735 GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVK 814 (866)
T ss_pred CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeE
Confidence 34678899999999999999999986 344 44677899999999999999999999999999999999999887643
Q ss_pred EEEEeecC
Q 037139 78 ATTFLTFH 85 (135)
Q Consensus 78 ~~~~~~~~ 85 (135)
++.++..+
T Consensus 815 v~r~i~~~ 822 (866)
T COG0553 815 VYRLITRG 822 (866)
T ss_pred EEEeecCC
Confidence 44444443
No 123
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.11 E-value=1e-05 Score=66.82 Aligned_cols=83 Identities=24% Similarity=0.390 Sum_probs=61.6
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcC-CCcEEEecCCCcccccccCCc--------EEEEecCCCCHHHHHHHhhhcCCC
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTK-RYNVLVATDVAGRGIDIPDVA--------HVINYDMPGNIEMYTHRIGRTGRA 72 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g-~~~ilv~T~~~~~G~d~~~v~--------~vi~~d~p~~~~~~~qr~GR~gR~ 72 (135)
|++..++++.....+ ..++. +.| .-.|.|||++++||.|+.--. +||....|.|..-=-|..||+||.
T Consensus 450 gi~h~vLNAk~~e~E-A~IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQ 526 (925)
T PRK12903 450 NIPHTVLNAKQNARE-AEIIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQ 526 (925)
T ss_pred CCCceeecccchhhH-HHHHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccC
Confidence 555666666533222 22222 445 356889999999999996432 789999999998889999999999
Q ss_pred CCCceEEEEeecCCh
Q 037139 73 GKTGVATTFLTFHDT 87 (135)
Q Consensus 73 ~~~g~~~~~~~~~~~ 87 (135)
|.+|.+-.+++-.|.
T Consensus 527 GDpGss~f~lSLeD~ 541 (925)
T PRK12903 527 GDVGESRFFISLDDQ 541 (925)
T ss_pred CCCCcceEEEecchH
Confidence 999988888876544
No 124
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.04 E-value=2.6e-05 Score=63.55 Aligned_cols=83 Identities=28% Similarity=0.400 Sum_probs=62.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCC-CcEEEecCCCcccccccCC---------------cEEEEecCCCCHHHHHHH
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKR-YNVLVATDVAGRGIDIPDV---------------AHVINYDMPGNIEMYTHR 65 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~-~~ilv~T~~~~~G~d~~~v---------------~~vi~~d~p~~~~~~~qr 65 (135)
|++..++++.-..++ .+++. +.|. -.|.|||++++||.|+.-- =+||-...+.|...-.|.
T Consensus 451 gI~h~vLNAk~~~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QL 527 (764)
T PRK12326 451 GVPAVVLNAKNDAEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQL 527 (764)
T ss_pred CCcceeeccCchHhH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHH
Confidence 566677777644333 23332 2332 3588999999999998622 268889999999999999
Q ss_pred hhhcCCCCCCceEEEEeecCCh
Q 037139 66 IGRTGRAGKTGVATTFLTFHDT 87 (135)
Q Consensus 66 ~GR~gR~~~~g~~~~~~~~~~~ 87 (135)
.||+||.|.+|.+-.|++-+|.
T Consensus 528 rGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 528 RGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred hcccccCCCCCceeEEEEcchh
Confidence 9999999999999888886654
No 125
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.02 E-value=3.6e-05 Score=60.35 Aligned_cols=88 Identities=23% Similarity=0.396 Sum_probs=70.0
Q ss_pred EEecCCCCHHHHHHHHHHHhc-CCCcEEEecCCCcccccccCCcEEEEecCCC-CHHHHHHHhhhcCCCC---C---Cce
Q 037139 6 TTLHGGKSQEQREISLEGFRT-KRYNVLVATDVAGRGIDIPDVAHVINYDMPG-NIEMYTHRIGRTGRAG---K---TGV 77 (135)
Q Consensus 6 ~~~hg~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~-~~~~~~qr~GR~gR~~---~---~g~ 77 (135)
.+|+|..++.+|.++++.|+. .+++.++.+.+....+|+|..+++|+..... |..+=.||.||.-|.. . ...
T Consensus 566 pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnaf 645 (776)
T KOG1123|consen 566 PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAF 645 (776)
T ss_pred ceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCcccccee
Confidence 368999999999999999975 5799999999999999999999999887664 6777899999987742 1 346
Q ss_pred EEEEeecCChhHHHHH
Q 037139 78 ATTFLTFHDTDVFYDL 93 (135)
Q Consensus 78 ~~~~~~~~~~~~~~~~ 93 (135)
.+.+++.+....+..-
T Consensus 646 FYSLVS~DTqEM~YSt 661 (776)
T KOG1123|consen 646 FYSLVSKDTQEMYYST 661 (776)
T ss_pred eeeeeecchHHHHhhh
Confidence 6777776655554333
No 126
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.01 E-value=1.8e-05 Score=67.04 Aligned_cols=79 Identities=23% Similarity=0.320 Sum_probs=68.5
Q ss_pred EecCCCCHHHHHHHHHHHhcC-CCcEE-EecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCce--EEEEe
Q 037139 7 TLHGGKSQEQREISLEGFRTK-RYNVL-VATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGV--ATTFL 82 (135)
Q Consensus 7 ~~hg~~~~~~r~~~~~~f~~g-~~~il-v~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~--~~~~~ 82 (135)
-+-|+.++.+|.++.++|+++ .++|| ++|-+.+-|+|+-.++.||.++=.|++..=+|.+-||-|.|+.-. ++.++
T Consensus 1372 RLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlI 1451 (1549)
T KOG0392|consen 1372 RLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLI 1451 (1549)
T ss_pred EecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeeh
Confidence 567999999999999999998 89988 577899999999999999999999999999999999999987643 44444
Q ss_pred ecC
Q 037139 83 TFH 85 (135)
Q Consensus 83 ~~~ 85 (135)
..+
T Consensus 1452 trG 1454 (1549)
T KOG0392|consen 1452 TRG 1454 (1549)
T ss_pred hcc
Confidence 443
No 127
>COG4889 Predicted helicase [General function prediction only]
Probab=98.00 E-value=1.2e-05 Score=66.53 Aligned_cols=81 Identities=22% Similarity=0.336 Sum_probs=64.4
Q ss_pred CceEEEec--CCCCHHHHHHHHHH---HhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCC---
Q 037139 2 GYRVTTLH--GGKSQEQREISLEG---FRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG--- 73 (135)
Q Consensus 2 g~~v~~~h--g~~~~~~r~~~~~~---f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~--- 73 (135)
++.+.+=| |.|...+|...+.. |...+++||-...++.+|+|+|..+.||.+|+-.+.-+.+|.+||+.|..
T Consensus 497 nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK 576 (1518)
T COG4889 497 NLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGK 576 (1518)
T ss_pred CceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCC
Confidence 34455555 88999999655543 35678889988899999999999999999999999999999999999953
Q ss_pred CCceEEEEe
Q 037139 74 KTGVATTFL 82 (135)
Q Consensus 74 ~~g~~~~~~ 82 (135)
..|+.|+-+
T Consensus 577 ~yGYIILPI 585 (1518)
T COG4889 577 KYGYIILPI 585 (1518)
T ss_pred ccceEEEEe
Confidence 246666544
No 128
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.91 E-value=4.6e-05 Score=63.61 Aligned_cols=83 Identities=31% Similarity=0.380 Sum_probs=60.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCC-CcEEEecCCCcccccccC---C-----cEEEEecCCCCHHHHHHHhhhcCCC
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKR-YNVLVATDVAGRGIDIPD---V-----AHVINYDMPGNIEMYTHRIGRTGRA 72 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~-~~ilv~T~~~~~G~d~~~---v-----~~vi~~d~p~~~~~~~qr~GR~gR~ 72 (135)
|++..++++.-...+-+-+. +.|. -.|.|||++++||.|+.- | =+||-...|.|...-.|..||+||.
T Consensus 592 gi~h~vLNak~~~~Ea~iia---~AG~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQ 668 (970)
T PRK12899 592 RIEHTVLNAKNHAQEAEIIA---GAGKLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARL 668 (970)
T ss_pred CCcceecccchhhhHHHHHH---hcCCCCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccC
Confidence 44555556553322222222 2343 458899999999999942 2 2688899999999999999999999
Q ss_pred CCCceEEEEeecCCh
Q 037139 73 GKTGVATTFLTFHDT 87 (135)
Q Consensus 73 ~~~g~~~~~~~~~~~ 87 (135)
|.+|.+..+++-.|.
T Consensus 669 GdpGss~f~lSlEDd 683 (970)
T PRK12899 669 GDPGAAKFFLSFEDR 683 (970)
T ss_pred CCCCceeEEEEcchH
Confidence 999999988887654
No 129
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.91 E-value=8.4e-05 Score=58.26 Aligned_cols=86 Identities=19% Similarity=0.269 Sum_probs=71.9
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcC-CCcEE-EecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCC--Cc
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTK-RYNVL-VATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGK--TG 76 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g-~~~il-v~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~--~g 76 (135)
.|+.+.-+-|+|++..|..+++.|.+. +++|+ ++-.+.+..+|+-..+.|+..|+.|++..-.|...|.-|.|+ +-
T Consensus 661 aGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPv 740 (791)
T KOG1002|consen 661 AGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPV 740 (791)
T ss_pred cCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccce
Confidence 388999999999999999999999764 67765 556788888999999999999999999998888888877764 55
Q ss_pred eEEEEeecCC
Q 037139 77 VATTFLTFHD 86 (135)
Q Consensus 77 ~~~~~~~~~~ 86 (135)
.++.|+.+..
T Consensus 741 kvvrf~iEns 750 (791)
T KOG1002|consen 741 KVVRFCIENS 750 (791)
T ss_pred eEEEeehhcc
Confidence 6777777653
No 130
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.87 E-value=0.00016 Score=59.05 Aligned_cols=54 Identities=22% Similarity=0.237 Sum_probs=45.6
Q ss_pred HHHHHHHhc-CCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCC
Q 037139 18 EISLEGFRT-KRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA 72 (135)
Q Consensus 18 ~~~~~~f~~-g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~ 72 (135)
..++++|+. +.++|||+++++..|+|.|.+++++..-+..+ -.++|.+||+.|.
T Consensus 580 ~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 580 YKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred HHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccc
Confidence 478889976 68999999999999999999998776665554 4589999999993
No 131
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.84 E-value=4.3e-05 Score=64.19 Aligned_cols=59 Identities=31% Similarity=0.519 Sum_probs=50.4
Q ss_pred CcEEEecCCCccccccc---CC-----cEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEEeecCCh
Q 037139 29 YNVLVATDVAGRGIDIP---DV-----AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 87 (135)
Q Consensus 29 ~~ilv~T~~~~~G~d~~---~v-----~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~~~~~~~ 87 (135)
-.|-|||++++||.|+. .| =+||-...+.|..--.|..||+||.|.+|.+-.+++-.|.
T Consensus 677 GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 677 GTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 35789999999999995 22 3688889999999999999999999999998888886654
No 132
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.71 E-value=0.00044 Score=50.73 Aligned_cols=80 Identities=18% Similarity=0.268 Sum_probs=59.3
Q ss_pred HHHHHHHhcCCCcEEEecCCCcccccccC--------CcEEEEecCCCCHHHHHHHhhhcCCCCCC-ceEEEEeecC---
Q 037139 18 EISLEGFRTKRYNVLVATDVAGRGIDIPD--------VAHVINYDMPGNIEMYTHRIGRTGRAGKT-GVATTFLTFH--- 85 (135)
Q Consensus 18 ~~~~~~f~~g~~~ilv~T~~~~~G~d~~~--------v~~vi~~d~p~~~~~~~qr~GR~gR~~~~-g~~~~~~~~~--- 85 (135)
....+.|.+|+.+|+|.|++.+.|+-+.. -++-|.+.+||+....+|..||+-|.++. ...+.++...
T Consensus 51 ~~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~g 130 (278)
T PF13871_consen 51 IAEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPG 130 (278)
T ss_pred HHHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHH
Confidence 35677999999999999999999998853 23457899999999999999999998863 3334444432
Q ss_pred ChhHHHHHHHHH
Q 037139 86 DTDVFYDLKQML 97 (135)
Q Consensus 86 ~~~~~~~~~~~~ 97 (135)
+..+...+.+.+
T Consensus 131 E~Rfas~va~rL 142 (278)
T PF13871_consen 131 ERRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 133
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=97.67 E-value=0.00032 Score=57.17 Aligned_cols=85 Identities=25% Similarity=0.337 Sum_probs=71.8
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcE-EEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCC--ce
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNV-LVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKT--GV 77 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~i-lv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~--g~ 77 (135)
+|+.-.-+.|+....+|..++.+|+..++=| |++|.+.+.|+|+..++.||.||..|++..=.|.+.||-|.|+. -.
T Consensus 1067 r~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvt 1146 (1185)
T KOG0388|consen 1067 RGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVT 1146 (1185)
T ss_pred hccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCcccee
Confidence 3566777889999999999999999877654 57999999999999999999999999999999999999998864 34
Q ss_pred EEEEeecC
Q 037139 78 ATTFLTFH 85 (135)
Q Consensus 78 ~~~~~~~~ 85 (135)
++.++..+
T Consensus 1147 vyrl~~rg 1154 (1185)
T KOG0388|consen 1147 VYRLITRG 1154 (1185)
T ss_pred eeeecccc
Confidence 55555543
No 134
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.64 E-value=0.00057 Score=55.53 Aligned_cols=80 Identities=19% Similarity=0.251 Sum_probs=67.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhc--CCCcEE-EecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRT--KRYNVL-VATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVA 78 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~--g~~~il-v~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~ 78 (135)
|+....+||....++|+.+++.|.. |..+|+ +.-.+.+.|+|+-..+++|.+|+.|++.-=.|.+.|..|+|+...+
T Consensus 770 g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V 849 (901)
T KOG4439|consen 770 GHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDV 849 (901)
T ss_pred CeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCce
Confidence 5667789999999999999999964 556666 4557888999999999999999999999999999999999976555
Q ss_pred EEE
Q 037139 79 TTF 81 (135)
Q Consensus 79 ~~~ 81 (135)
++.
T Consensus 850 ~Ih 852 (901)
T KOG4439|consen 850 FIH 852 (901)
T ss_pred EEE
Confidence 433
No 135
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.63 E-value=0.00013 Score=60.69 Aligned_cols=59 Identities=34% Similarity=0.548 Sum_probs=50.1
Q ss_pred CcEEEecCCCccccccc--------------------------------CC-----cEEEEecCCCCHHHHHHHhhhcCC
Q 037139 29 YNVLVATDVAGRGIDIP--------------------------------DV-----AHVINYDMPGNIEMYTHRIGRTGR 71 (135)
Q Consensus 29 ~~ilv~T~~~~~G~d~~--------------------------------~v-----~~vi~~d~p~~~~~~~qr~GR~gR 71 (135)
-.|.|||++++||.||. .| =+||-...+.|..-=.|..||+||
T Consensus 498 GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGR 577 (913)
T PRK13103 498 GALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGR 577 (913)
T ss_pred CcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhcccccc
Confidence 45889999999999994 11 268888899999999999999999
Q ss_pred CCCCceEEEEeecCCh
Q 037139 72 AGKTGVATTFLTFHDT 87 (135)
Q Consensus 72 ~~~~g~~~~~~~~~~~ 87 (135)
.|.+|.+-.|++-.|.
T Consensus 578 QGDPGsS~f~lSlED~ 593 (913)
T PRK13103 578 QGDPGSSRFYLSLEDS 593 (913)
T ss_pred CCCCCceEEEEEcCcH
Confidence 9999999988887554
No 136
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.63 E-value=0.0003 Score=58.97 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCCCcEEEecCCCcccccccCCc--EEEEecCCCC------------------------------HHHH
Q 037139 15 EQREISLEGFRTKRYNVLVATDVAGRGIDIPDVA--HVINYDMPGN------------------------------IEMY 62 (135)
Q Consensus 15 ~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~--~vi~~d~p~~------------------------------~~~~ 62 (135)
.+|.+++++|++++..||+||+.+.+|+|+|+.. +||...+|.. ...+
T Consensus 712 ~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l 791 (850)
T TIGR01407 712 GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRL 791 (850)
T ss_pred ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHH
Confidence 5789999999999999999999999999999876 4555555531 1224
Q ss_pred HHHhhhcCCCCCCceEEEEee
Q 037139 63 THRIGRTGRAGKTGVATTFLT 83 (135)
Q Consensus 63 ~qr~GR~gR~~~~g~~~~~~~ 83 (135)
.|.+||.-|..++.=++++++
T Consensus 792 ~Qa~GRlIRs~~D~G~v~ilD 812 (850)
T TIGR01407 792 RQALGRLIRRENDRGSIVILD 812 (850)
T ss_pred HHhhccccccCCceEEEEEEc
Confidence 788899988765422333433
No 137
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.60 E-value=5.7e-05 Score=58.99 Aligned_cols=78 Identities=24% Similarity=0.322 Sum_probs=58.5
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhc---C--CCcEEEecCCCcccccccCCcEEEEec------------------CCCCH
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRT---K--RYNVLVATDVAGRGIDIPDVAHVINYD------------------MPGNI 59 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~---g--~~~ilv~T~~~~~G~d~~~v~~vi~~d------------------~p~~~ 59 (135)
++|.++| |.++..+++-... | ..+|+|+|++++..+.++.+.+||.-+ .|.|.
T Consensus 287 l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISk 362 (699)
T KOG0925|consen 287 LKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISK 362 (699)
T ss_pred ceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchH
Confidence 4567777 4444554443321 1 356999999999999999999998544 56678
Q ss_pred HHHHHHhhhcCCCCCCceEEEEeecC
Q 037139 60 EMYTHRIGRTGRAGKTGVATTFLTFH 85 (135)
Q Consensus 60 ~~~~qr~GR~gR~~~~g~~~~~~~~~ 85 (135)
.+..||.||+||. .+|.|+.++.+.
T Consensus 363 asA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 363 ASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred hHHHHHhhhccCC-CCCceEEeecHH
Confidence 8899999999987 589999998753
No 138
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.56 E-value=0.00049 Score=46.73 Aligned_cols=70 Identities=26% Similarity=0.330 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCCCcEEEecC--CCcccccccC--CcEEEEecCCC----CH--------------------------
Q 037139 14 QEQREISLEGFRTKRYNVLVATD--VAGRGIDIPD--VAHVINYDMPG----NI-------------------------- 59 (135)
Q Consensus 14 ~~~r~~~~~~f~~g~~~ilv~T~--~~~~G~d~~~--v~~vi~~d~p~----~~-------------------------- 59 (135)
..+....++.|+.++-.||+++. .+.+|+|+|+ +++||...+|. ++
T Consensus 45 ~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (167)
T PF13307_consen 45 SKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAI 124 (167)
T ss_dssp CCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHH
T ss_pred cchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHH
Confidence 55788999999999999999998 9999999996 67788888774 21
Q ss_pred HHHHHHhhhcCCCCCCceEEEEee
Q 037139 60 EMYTHRIGRTGRAGKTGVATTFLT 83 (135)
Q Consensus 60 ~~~~qr~GR~gR~~~~g~~~~~~~ 83 (135)
....|.+||+-|..++--++.+++
T Consensus 125 ~~l~Qa~GR~iR~~~D~g~i~llD 148 (167)
T PF13307_consen 125 RKLKQAIGRLIRSEDDYGVIILLD 148 (167)
T ss_dssp HHHHHHHHCC--STT-EEEEEEES
T ss_pred HHHhhhcCcceeccCCcEEEEEEc
Confidence 113788999988766533333433
No 139
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.55 E-value=0.0012 Score=43.70 Aligned_cols=50 Identities=26% Similarity=0.347 Sum_probs=37.9
Q ss_pred ecCCCCHHHHHHHHHHHhcCC-CcEEEecCCCcccccccC--CcEEEEecCCC
Q 037139 8 LHGGKSQEQREISLEGFRTKR-YNVLVATDVAGRGIDIPD--VAHVINYDMPG 57 (135)
Q Consensus 8 ~hg~~~~~~r~~~~~~f~~g~-~~ilv~T~~~~~G~d~~~--v~~vi~~d~p~ 57 (135)
+.-+.+..+..++++.|+... ..||+++.-+.+|+|+|+ +.+||...+|.
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 333455656789999998764 379999988999999997 56788777664
No 140
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.41 E-value=0.0011 Score=54.50 Aligned_cols=86 Identities=26% Similarity=0.320 Sum_probs=71.2
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCC-Cc-EEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCC--c
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKR-YN-VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKT--G 76 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~-~~-ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~--g 76 (135)
+|++..-+-|...-.+|+.+++.|...+ +. .|++|.+.+.|+|+-.++.||.+|...++-.=.|.--||-|.|+. -
T Consensus 800 l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpV 879 (941)
T KOG0389|consen 800 LGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPV 879 (941)
T ss_pred cCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCccee
Confidence 4667777889999999999999997654 44 457999999999999999999999999888888988888888864 4
Q ss_pred eEEEEeecCC
Q 037139 77 VATTFLTFHD 86 (135)
Q Consensus 77 ~~~~~~~~~~ 86 (135)
.++.+++...
T Consensus 880 tV~rLItk~T 889 (941)
T KOG0389|consen 880 TVYRLITKST 889 (941)
T ss_pred EEEEEEecCc
Confidence 5666776653
No 141
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.34 E-value=0.0019 Score=42.79 Aligned_cols=44 Identities=30% Similarity=0.358 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcCCC---cEEEecCC--CcccccccC--CcEEEEecCCC
Q 037139 14 QEQREISLEGFRTKRY---NVLVATDV--AGRGIDIPD--VAHVINYDMPG 57 (135)
Q Consensus 14 ~~~r~~~~~~f~~g~~---~ilv~T~~--~~~G~d~~~--v~~vi~~d~p~ 57 (135)
..+..++++.|++..- .||+++.- +.+|+|+|+ +++||...+|.
T Consensus 30 ~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 30 SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 3345789999987544 68888876 899999997 56788777664
No 142
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.22 E-value=0.0037 Score=53.74 Aligned_cols=84 Identities=27% Similarity=0.384 Sum_probs=63.9
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCC-Cc-EEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCC--Cce
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKR-YN-VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGK--TGV 77 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~-~~-ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~--~g~ 77 (135)
|+...-+-|..+-++|+..+++|+... +- .|++|...+.|||+-..+.||+||..|++.-=.|.--|+-|.|+ +-+
T Consensus 1300 gylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVH 1379 (1958)
T KOG0391|consen 1300 GYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVH 1379 (1958)
T ss_pred ceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceE
Confidence 555666788999999999999997654 22 34688899999999999999999999997766665555555443 345
Q ss_pred EEEEeecC
Q 037139 78 ATTFLTFH 85 (135)
Q Consensus 78 ~~~~~~~~ 85 (135)
.|.+++..
T Consensus 1380 IYRLISe~ 1387 (1958)
T KOG0391|consen 1380 IYRLISER 1387 (1958)
T ss_pred EEEeeccc
Confidence 66777654
No 143
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=97.06 E-value=0.002 Score=50.68 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=63.6
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcC-CCcEE-EecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCc
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTK-RYNVL-VATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTG 76 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g-~~~il-v~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g 76 (135)
++..+-|-|..++.+|....+.|+.. ++.|- ++-.+++.|+++...+.|+...++|++.-++|.-.|+-|.|+..
T Consensus 516 ~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQks 592 (689)
T KOG1000|consen 516 KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKS 592 (689)
T ss_pred CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccc
Confidence 55667788999999999999999865 44543 34467899999999999999999999999999999999888754
No 144
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.05 E-value=0.0028 Score=53.31 Aligned_cols=81 Identities=23% Similarity=0.290 Sum_probs=68.0
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcCCCc---EEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEE
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTKRYN---VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVAT 79 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~---ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~ 79 (135)
++..-+-|....++|-..++.|...+.. .|..|.+.+.|+|+..++.||.||..|++....|+.-||-|.|+...+-
T Consensus 751 ~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evR 830 (1157)
T KOG0386|consen 751 YKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVR 830 (1157)
T ss_pred hheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhhee
Confidence 4455677889999999999999877644 5679999999999999999999999999999999999999988654444
Q ss_pred EEee
Q 037139 80 TFLT 83 (135)
Q Consensus 80 ~~~~ 83 (135)
++..
T Consensus 831 v~rl 834 (1157)
T KOG0386|consen 831 VLRL 834 (1157)
T ss_pred eeee
Confidence 4433
No 145
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=97.04 E-value=0.0019 Score=54.41 Aligned_cols=83 Identities=25% Similarity=0.287 Sum_probs=68.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCC---Cc-EEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCC--
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKR---YN-VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKT-- 75 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~---~~-ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~-- 75 (135)
|..-.-+-|..+..+|++..+.|++-. .+ .||.|.+.+.|+|+-.++.||.||..|+++-=.|.+=|+.|+|+.
T Consensus 1188 GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKP 1267 (1567)
T KOG1015|consen 1188 GKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKP 1267 (1567)
T ss_pred CCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCc
Confidence 444556789999999999999998642 33 679999999999999999999999999999889999999999975
Q ss_pred ceEEEEeec
Q 037139 76 GVATTFLTF 84 (135)
Q Consensus 76 g~~~~~~~~ 84 (135)
.++|.|+..
T Consensus 1268 vyiYRfiAq 1276 (1567)
T KOG1015|consen 1268 VYIYRFIAQ 1276 (1567)
T ss_pred eeehhhhhc
Confidence 445555443
No 146
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.04 E-value=0.0026 Score=54.01 Aligned_cols=47 Identities=26% Similarity=0.344 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccC--CcEEEEecCCC
Q 037139 11 GKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPD--VAHVINYDMPG 57 (135)
Q Consensus 11 ~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~--v~~vi~~d~p~ 57 (135)
+++...|.++++.|+.++-.||++|..+.+|+|+|+ +.+||...+|.
T Consensus 787 g~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF 835 (928)
T PRK08074 787 GVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPF 835 (928)
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEecCCC
Confidence 344456889999999998899999999999999997 46777666554
No 147
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=96.95 E-value=0.0055 Score=51.24 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=24.7
Q ss_pred CCCHHHHHHHhhhcCCCCCCceEEEEeecCCh
Q 037139 56 PGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 87 (135)
Q Consensus 56 p~~~~~~~qr~GR~gR~~~~g~~~~~~~~~~~ 87 (135)
-.|..-=-|..||+||.|.+|..-.|++-+|.
T Consensus 602 heSrRIDnQLrGRaGRQGDPG~s~f~lSLED~ 633 (870)
T CHL00122 602 HESRRIDNQLRGRAGRQGDPGSSRFFLSLEDN 633 (870)
T ss_pred CchHHHHHHHhccccCCCCCCcceEEEEeccH
Confidence 33444448999999999999988888886655
No 148
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.91 E-value=0.0022 Score=53.06 Aligned_cols=66 Identities=18% Similarity=0.369 Sum_probs=51.1
Q ss_pred EEEecCCCCHHHHHHHHHHHhc--CCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCC
Q 037139 5 VTTLHGGKSQEQREISLEGFRT--KRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA 72 (135)
Q Consensus 5 v~~~hg~~~~~~r~~~~~~f~~--g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~ 72 (135)
+..|.|+-. +-+..++.|.. ..-+|.|+.+++..|+|+|.|.+++.+-.-.|...|.||+||+-|.
T Consensus 458 a~~IT~d~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 458 AMKITGDAE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred EEEEeccch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 445555532 22444555543 3456889999999999999999999999999999999999999883
No 149
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=96.78 E-value=0.0056 Score=44.10 Aligned_cols=110 Identities=13% Similarity=0.222 Sum_probs=74.9
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCC----CcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcC-CCCCCc
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKR----YNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTG-RAGKTG 76 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~----~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~g-R~~~~g 76 (135)
|+.+..++++.+.+. -.+..+. ..|+|+=+.++||+.+++..+......+...+++.||.-..| |.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 477888887765544 4455554 789999999999999999999999999999999999965566 555566
Q ss_pred eEEEEeecCChhHHHHHHHHHhhCCCCCChHHHHHHHhhCCCCC
Q 037139 77 VATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPGT 120 (135)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 120 (135)
.|-++..+.-...+..+.+ ...++.+++.........|..
T Consensus 185 l~Ri~~~~~l~~~f~~i~~----~~e~lr~~i~~~~~~~~tp~~ 224 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAE----AEEELREEIKEMANNGLTPKD 224 (239)
T ss_pred ceEEecCHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCHHH
Confidence 7777776654444444333 333344455554444444433
No 150
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.77 E-value=0.0089 Score=49.03 Aligned_cols=61 Identities=8% Similarity=0.029 Sum_probs=44.7
Q ss_pred HHHHHHhcCCCcEEEecC----CCcccccccCCcEEEEecC------CC------CHHHHHHHhhhcCCCCCCceEEEEe
Q 037139 19 ISLEGFRTKRYNVLVATD----VAGRGIDIPDVAHVINYDM------PG------NIEMYTHRIGRTGRAGKTGVATTFL 82 (135)
Q Consensus 19 ~~~~~f~~g~~~ilv~T~----~~~~G~d~~~v~~vi~~d~------p~------~~~~~~qr~GR~gR~~~~g~~~~~~ 82 (135)
.+++.|. ++.+|||+|. ++. +++.+|+.+|. |. ....+.|-+||+||.+..|.+++..
T Consensus 463 ~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~ 536 (665)
T PRK14873 463 QVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA 536 (665)
T ss_pred HHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe
Confidence 4788896 5999999998 555 35677665552 21 2455689999999988889988875
Q ss_pred ecC
Q 037139 83 TFH 85 (135)
Q Consensus 83 ~~~ 85 (135)
.++
T Consensus 537 ~p~ 539 (665)
T PRK14873 537 ESS 539 (665)
T ss_pred CCC
Confidence 444
No 151
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=96.77 E-value=0.002 Score=54.45 Aligned_cols=52 Identities=31% Similarity=0.564 Sum_probs=44.9
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEec----CCCcccccccC-CcEEEEecCCC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT----DVAGRGIDIPD-VAHVINYDMPG 57 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T----~~~~~G~d~~~-v~~vi~~d~p~ 57 (135)
.|+++..+|++ .++.++.|..|++++||+. .++-+|+|+|. +.++|.++.|.
T Consensus 361 ~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 361 HGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred cCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 47888889984 3889999999999999875 47889999997 78999999994
No 152
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=96.68 E-value=0.0049 Score=52.51 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=50.7
Q ss_pred eEEEecCCCCHHHHHHHHHHH----------------------hc----CCCcEEEecCCCcccccccCCcEEEEecCCC
Q 037139 4 RVTTLHGGKSQEQREISLEGF----------------------RT----KRYNVLVATDVAGRGIDIPDVAHVINYDMPG 57 (135)
Q Consensus 4 ~v~~~hg~~~~~~r~~~~~~f----------------------~~----g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~ 57 (135)
.+.+||+..+...|..+.+.+ .+ +..-|+|+|++++.|+|+. .+.+| --|.
T Consensus 788 ~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~--~~~~ 864 (1110)
T TIGR02562 788 HLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAI--ADPS 864 (1110)
T ss_pred eEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeee--eccC
Confidence 467899998888877766553 12 3567999999999999983 34333 2366
Q ss_pred CHHHHHHHhhhcCCCCC
Q 037139 58 NIEMYTHRIGRTGRAGK 74 (135)
Q Consensus 58 ~~~~~~qr~GR~gR~~~ 74 (135)
+..+.+|++||+.|.+.
T Consensus 865 ~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 865 SMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred cHHHHHHHhhccccccc
Confidence 78899999999998654
No 153
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.64 E-value=0.0079 Score=49.06 Aligned_cols=67 Identities=25% Similarity=0.368 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhcCCC-cEEEecCCCcccccccC--CcEEEEecCCCC------------------------------HH
Q 037139 14 QEQREISLEGFRTKRY-NVLVATDVAGRGIDIPD--VAHVINYDMPGN------------------------------IE 60 (135)
Q Consensus 14 ~~~r~~~~~~f~~g~~-~ilv~T~~~~~G~d~~~--v~~vi~~d~p~~------------------------------~~ 60 (135)
...+.+.++.|+.+.- -++|+|..+.+|+|+|+ ..+||...+|.- ..
T Consensus 513 ~~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~ 592 (654)
T COG1199 513 EDEREELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVI 592 (654)
T ss_pred CCcHHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHH
Confidence 3344588888877655 89999999999999987 467777776642 23
Q ss_pred HHHHHhhhcCCCCCC-ceEEE
Q 037139 61 MYTHRIGRTGRAGKT-GVATT 80 (135)
Q Consensus 61 ~~~qr~GR~gR~~~~-g~~~~ 80 (135)
...|.+||+-|.-++ |.+++
T Consensus 593 ~l~QavGRlIR~~~D~G~ivl 613 (654)
T COG1199 593 KLRQAVGRLIRSEDDRGVIVL 613 (654)
T ss_pred HHHHhhccccccCCCceEEEE
Confidence 458999999986544 44333
No 154
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=96.63 E-value=0.032 Score=43.66 Aligned_cols=92 Identities=17% Similarity=0.175 Sum_probs=71.6
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC--CCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCC-----
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD--VAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGK----- 74 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~--~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~----- 74 (135)
++....+|--.++.+-..+-..|..|+.+||+.|. -.-+=..+.++..||.|.+|..+.=|...++..+....
T Consensus 324 ~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~ 403 (442)
T PF06862_consen 324 NISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDA 403 (442)
T ss_pred CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccc
Confidence 45677888889999999999999999999999997 33445667889999999999999888887765554332
Q ss_pred -CceEEEEeecCChhHHHHH
Q 037139 75 -TGVATTFLTFHDTDVFYDL 93 (135)
Q Consensus 75 -~g~~~~~~~~~~~~~~~~~ 93 (135)
...|.++++.-|.-.++.+
T Consensus 404 ~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 404 ADATVTVLYSKYDALRLERI 423 (442)
T ss_pred cCceEEEEecHhHHHHHHHH
Confidence 4678888877666544433
No 155
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.48 E-value=0.016 Score=48.73 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCCcEEEecCCCcccccccC--CcEEEEecCCC----C--------------------------HHHHHH
Q 037139 17 REISLEGFRTKRYNVLVATDVAGRGIDIPD--VAHVINYDMPG----N--------------------------IEMYTH 64 (135)
Q Consensus 17 r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~--v~~vi~~d~p~----~--------------------------~~~~~q 64 (135)
+.+++++|++++-.||++|+.+-+|+|+|. ..+||...+|. + ...+.|
T Consensus 683 ~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQ 762 (820)
T PRK07246 683 AYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQ 762 (820)
T ss_pred HHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHH
Confidence 466899999998899999999999999974 44555555442 2 122488
Q ss_pred HhhhcCCCCC-CceEEEEeec
Q 037139 65 RIGRTGRAGK-TGVATTFLTF 84 (135)
Q Consensus 65 r~GR~gR~~~-~g~~~~~~~~ 84 (135)
-+||.=|... .|. +++++.
T Consensus 763 g~GRLIRs~~D~Gv-v~ilD~ 782 (820)
T PRK07246 763 AIGRTMRREDQKSA-VLILDR 782 (820)
T ss_pred HhcccccCCCCcEE-EEEECC
Confidence 8899988764 454 344443
No 156
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.48 E-value=0.016 Score=47.81 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=33.4
Q ss_pred HHHHHHHHHh----cCCCcEEEecCCCcccccccC--CcEEEEecCCC
Q 037139 16 QREISLEGFR----TKRYNVLVATDVAGRGIDIPD--VAHVINYDMPG 57 (135)
Q Consensus 16 ~r~~~~~~f~----~g~~~ilv~T~~~~~G~d~~~--v~~vi~~d~p~ 57 (135)
.+.++++.|+ .++-.||++|..+.+|+|+|+ +++||...+|.
T Consensus 569 ~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 569 PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEEcCCC
Confidence 4677887776 467789999999999999987 67788766663
No 157
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=96.36 E-value=0.00098 Score=58.57 Aligned_cols=56 Identities=30% Similarity=0.532 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCC
Q 037139 17 REISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA 72 (135)
Q Consensus 17 r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~ 72 (135)
+++++..|...++++|++|.++.+|+|++.++.++.++.|.....|+|..||+-+.
T Consensus 343 ~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 343 QAEVLRRFHFHELNLLIATSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHHhhcchhhhhhheeccCcchHHHHHHhhcccccc
Confidence 68899999999999999999999999999999999999999999999999999654
No 158
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.07 E-value=0.014 Score=48.02 Aligned_cols=52 Identities=21% Similarity=0.344 Sum_probs=45.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC-CcccccccCCcEEEEe
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-AGRGIDIPDVAHVINY 53 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~-~~~G~d~~~v~~vi~~ 53 (135)
|+++..+||+++..+|.++++.+.+|+.+|+|+|.. +...+.+.++.+||.-
T Consensus 338 ~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVID 390 (681)
T PRK10917 338 GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIID 390 (681)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEe
Confidence 688999999999999999999999999999999974 4446788899888743
No 159
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=95.58 E-value=0.03 Score=45.69 Aligned_cols=52 Identities=25% Similarity=0.356 Sum_probs=46.8
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCc-ccccccCCcEEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAG-RGIDIPDVAHVIN 52 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~-~G~d~~~v~~vi~ 52 (135)
+|++|..+.|++..+.|++++++..+|+++|+|+|-++- ..+++.+..+||.
T Consensus 338 ~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 338 LGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred cCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEE
Confidence 478899999999999999999999999999999997654 5799999888874
No 160
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.58 E-value=0.026 Score=46.11 Aligned_cols=52 Identities=23% Similarity=0.283 Sum_probs=44.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCc-ccccccCCcEEEEe
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAG-RGIDIPDVAHVINY 53 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~-~G~d~~~v~~vi~~ 53 (135)
|+++..+||+++.++|..+++.+.+|+.+|+|+|..+- ..+.+.++.+||.-
T Consensus 312 gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVID 364 (630)
T TIGR00643 312 GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVIID 364 (630)
T ss_pred CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEEe
Confidence 68899999999999999999999999999999997543 45778888888743
No 161
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.50 E-value=0.092 Score=43.48 Aligned_cols=43 Identities=28% Similarity=0.370 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhc----CCCcEEEec--CCCcccccccC--CcEEEEecCCC
Q 037139 15 EQREISLEGFRT----KRYNVLVAT--DVAGRGIDIPD--VAHVINYDMPG 57 (135)
Q Consensus 15 ~~r~~~~~~f~~----g~~~ilv~T--~~~~~G~d~~~--v~~vi~~d~p~ 57 (135)
.++.++++.|+. +.-.||+|+ ..+.+|+|+++ +++||..++|.
T Consensus 565 ~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 565 QETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred chHHHHHHHHHHHHhcCCceEEEEecCCcccCccccCCCCCcEEEEEccCC
Confidence 577889999964 455699998 88999999987 67888888876
No 162
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.43 E-value=0.057 Score=44.44 Aligned_cols=51 Identities=20% Similarity=0.137 Sum_probs=42.9
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEec
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYD 54 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d 54 (135)
..+..+|+++++.+|.+.+.+..+|+.+|+|+|.. +.=..+++..+||..+
T Consensus 215 ~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS-AvFaP~~~LgLIIvdE 265 (665)
T PRK14873 215 GDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS-AVFAPVEDLGLVAIWD 265 (665)
T ss_pred CcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce-eEEeccCCCCEEEEEc
Confidence 56889999999999999999999999999999975 3345667788887554
No 163
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.28 E-value=0.058 Score=44.52 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=42.9
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEec
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYD 54 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d 54 (135)
|..+..+||+++..+|.+.+.++..|+.+|+|+|.... -..+.++.+||..+
T Consensus 215 g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 215 GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEEC
Confidence 56789999999999999999999999999999997432 25567788887544
No 164
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=95.19 E-value=0.054 Score=45.27 Aligned_cols=81 Identities=21% Similarity=0.269 Sum_probs=65.3
Q ss_pred ecCCCCHHHHHHHHHHHhcC---CCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEEeec
Q 037139 8 LHGGKSQEQREISLEGFRTK---RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTF 84 (135)
Q Consensus 8 ~hg~~~~~~r~~~~~~f~~g---~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~~~~ 84 (135)
+.|..+..+|++.+++|++- .+-+++.|.....|+|+-..+-++.+|.-|++.--.|.+-|+-|.|+...|+++-.-
T Consensus 767 ldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlV 846 (1387)
T KOG1016|consen 767 LDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLV 846 (1387)
T ss_pred ccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeeh
Confidence 45778889999999999753 346788999999999999999999999999998889999999999876555554433
Q ss_pred CChh
Q 037139 85 HDTD 88 (135)
Q Consensus 85 ~~~~ 88 (135)
.+..
T Consensus 847 mD~~ 850 (1387)
T KOG1016|consen 847 MDNS 850 (1387)
T ss_pred hhhh
Confidence 3333
No 165
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.16 E-value=0.052 Score=43.27 Aligned_cols=52 Identities=19% Similarity=0.267 Sum_probs=42.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEec
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYD 54 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d 54 (135)
|..+..+||++++.+|.+.+.+..+|+.+|+|+|..... ..+.++++||.-+
T Consensus 50 ~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 50 GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 567889999999999999999999999999999974322 4567788877443
No 166
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.10 E-value=0.026 Score=48.04 Aligned_cols=31 Identities=19% Similarity=0.412 Sum_probs=29.5
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEecCCC
Q 037139 8 LHGGKSQEQREISLEGFRTKRYNVLVATDVA 38 (135)
Q Consensus 8 ~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~ 38 (135)
+||.|+.+++++++++|.+|+.+|||+|+.+
T Consensus 161 yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 161 YHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred eccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 9999999999999999999999999999854
No 167
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=95.08 E-value=0.12 Score=43.79 Aligned_cols=25 Identities=36% Similarity=0.683 Sum_probs=21.2
Q ss_pred HHHhhhcCCCCCCceEEEEeecCCh
Q 037139 63 THRIGRTGRAGKTGVATTFLTFHDT 87 (135)
Q Consensus 63 ~qr~GR~gR~~~~g~~~~~~~~~~~ 87 (135)
-|..||+||.|.+|..-.|++-.|.
T Consensus 666 NQLRGRaGRQGDPGsSrFflSLEDd 690 (939)
T PRK12902 666 NQLRGRAGRQGDPGSTRFFLSLEDN 690 (939)
T ss_pred HHhhcccccCCCCCcceEEEEechH
Confidence 7888999999999988888876554
No 168
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.97 E-value=0.034 Score=46.03 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=42.5
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVI 51 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi 51 (135)
+|.++..+|+++++.+|...+.+.++|+.+|+|+|-. +--..+++..+||
T Consensus 269 Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRS-AlF~Pf~~LGLII 318 (730)
T COG1198 269 FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRS-ALFLPFKNLGLII 318 (730)
T ss_pred hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEech-hhcCchhhccEEE
Confidence 3678899999999999999999999999999999964 2345667788777
No 169
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=94.89 E-value=0.14 Score=43.08 Aligned_cols=50 Identities=18% Similarity=-0.019 Sum_probs=36.7
Q ss_pred EecCCCcccccccC----------------------C----------cEEEEecCCCCHHHHHH--HhhhcCCCCCCceE
Q 037139 33 VATDVAGRGIDIPD----------------------V----------AHVINYDMPGNIEMYTH--RIGRTGRAGKTGVA 78 (135)
Q Consensus 33 v~T~~~~~G~d~~~----------------------v----------~~vi~~d~p~~~~~~~q--r~GR~gR~~~~g~~ 78 (135)
++|+...+|+|+|. + ++||.|++-.+...-+| |.||.|| ++.+
T Consensus 431 ~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEvyra~r~~r---~~rV 507 (814)
T TIGR00596 431 FEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEVYKASRPLR---PLRV 507 (814)
T ss_pred ccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHHHHccCCCC---CcEE
Confidence 67888889999997 5 89999997776655566 5555554 5677
Q ss_pred EEEeecC
Q 037139 79 TTFLTFH 85 (135)
Q Consensus 79 ~~~~~~~ 85 (135)
+.++..+
T Consensus 508 yfL~y~~ 514 (814)
T TIGR00596 508 YFLYYGG 514 (814)
T ss_pred EEEEECC
Confidence 7777655
No 170
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=94.87 E-value=0.076 Score=46.36 Aligned_cols=77 Identities=19% Similarity=0.210 Sum_probs=59.8
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEE----Eec------CCCCHHHHHHHhhhcCCCCCCceE
Q 037139 9 HGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVI----NYD------MPGNIEMYTHRIGRTGRAGKTGVA 78 (135)
Q Consensus 9 hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi----~~d------~p~~~~~~~qr~GR~gR~~~~g~~ 78 (135)
|-+|+..++.-+-..|..|.++++|...- ..|+-...--+|+ .|| .+.+.....|++|+|.| .|.|
T Consensus 1412 ~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~ 1487 (1674)
T KOG0951|consen 1412 HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKC 1487 (1674)
T ss_pred ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccE
Confidence 88999999999999999999999998766 7777765433333 455 34467889999999988 5578
Q ss_pred EEEeecCChhH
Q 037139 79 TTFLTFHDTDV 89 (135)
Q Consensus 79 ~~~~~~~~~~~ 89 (135)
++++.......
T Consensus 1488 vi~~~~~~k~y 1498 (1674)
T KOG0951|consen 1488 VIMCHTPKKEY 1498 (1674)
T ss_pred EEEecCchHHH
Confidence 88887765543
No 171
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=94.85 E-value=0.32 Score=39.96 Aligned_cols=67 Identities=22% Similarity=0.226 Sum_probs=47.4
Q ss_pred EecCCCCHHHHHHHHHHHhc----CCCcEEEecCCCcccccc--------c--CCcEEEEecCCCC--------------
Q 037139 7 TLHGGKSQEQREISLEGFRT----KRYNVLVATDVAGRGIDI--------P--DVAHVINYDMPGN-------------- 58 (135)
Q Consensus 7 ~~hg~~~~~~r~~~~~~f~~----g~~~ilv~T~~~~~G~d~--------~--~v~~vi~~d~p~~-------------- 58 (135)
.+.|+.+ .+...+++|+. |.-.||++|+.+-+|+|+ | .+++||...+|..
T Consensus 499 l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~ 576 (636)
T TIGR03117 499 VIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKT 576 (636)
T ss_pred EEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhc
Confidence 4455443 34668888887 478999999999999999 2 3788887776632
Q ss_pred -----------HHHHHHHhhhcCCCCCC
Q 037139 59 -----------IEMYTHRIGRTGRAGKT 75 (135)
Q Consensus 59 -----------~~~~~qr~GR~gR~~~~ 75 (135)
.-.+.|-+||.=|...+
T Consensus 577 g~~~f~~~p~a~i~lkQg~GRLIR~~~D 604 (636)
T TIGR03117 577 SVRPWEIINESLMMLRQGLGRLVRHPDM 604 (636)
T ss_pred CCChHhhhHHHHHHHHHhcCceeecCCC
Confidence 12247888888786543
No 172
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.82 E-value=0.09 Score=44.10 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=57.3
Q ss_pred HHHHhcCCCcEEEecCCCcccccccCCcEE--------EEecCCCCHHHHHHHhhhcCCCCC---CceEEEEee-cCChh
Q 037139 21 LEGFRTKRYNVLVATDVAGRGIDIPDVAHV--------INYDMPGNIEMYTHRIGRTGRAGK---TGVATTFLT-FHDTD 88 (135)
Q Consensus 21 ~~~f~~g~~~ilv~T~~~~~G~d~~~v~~v--------i~~d~p~~~~~~~qr~GR~gR~~~---~g~~~~~~~-~~~~~ 88 (135)
-++|..|+-.|-|-+.+++-|+-+..-..| |-+.+|||....+|..||+-|.++ +.+++++.. ..+..
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 367999999999999999999998754433 568899999999999999999765 333333332 23555
Q ss_pred HHHHHHHHHhh
Q 037139 89 VFYDLKQMLIQ 99 (135)
Q Consensus 89 ~~~~~~~~~~~ 99 (135)
+...+.+.++.
T Consensus 930 FAS~VAKRLES 940 (1300)
T KOG1513|consen 930 FASIVAKRLES 940 (1300)
T ss_pred HHHHHHHHHHh
Confidence 55555555543
No 173
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=94.73 E-value=0.0059 Score=51.20 Aligned_cols=80 Identities=23% Similarity=0.362 Sum_probs=63.4
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEec------------------CCCCHHHHHH
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYD------------------MPGNIEMYTH 64 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d------------------~p~~~~~~~q 64 (135)
+.+...|+-+...++.++.+-...|..++++.|.+....+.+.++..|+..+ .-.+..+..|
T Consensus 675 y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eq 754 (1282)
T KOG0921|consen 675 YEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQ 754 (1282)
T ss_pred cccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHh
Confidence 3466789999999999999999999999999999999888888877666433 1224566799
Q ss_pred HhhhcCCCCCCceEEEEee
Q 037139 65 RIGRTGRAGKTGVATTFLT 83 (135)
Q Consensus 65 r~GR~gR~~~~g~~~~~~~ 83 (135)
|.||+||. ++|.|..+++
T Consensus 755 r~gr~grv-R~G~~f~lcs 772 (1282)
T KOG0921|consen 755 RKGRAGRV-RPGFCFHLCS 772 (1282)
T ss_pred hcccCcee-cccccccccH
Confidence 99999986 4677777765
No 174
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.70 E-value=0.13 Score=43.91 Aligned_cols=51 Identities=14% Similarity=0.266 Sum_probs=43.6
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC-CCcccccccCCcEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-VAGRGIDIPDVAHVIN 52 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~-~~~~G~d~~~v~~vi~ 52 (135)
++++..++|..+.+++.++++.+++|+++|+|+|. .+...+.+.++.++|.
T Consensus 528 ~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 528 PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 56788899999999999999999999999999996 4445678888888774
No 175
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=92.74 E-value=0.29 Score=42.48 Aligned_cols=50 Identities=16% Similarity=0.359 Sum_probs=44.5
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEec-CCCcccccccCCcEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT-DVAGRGIDIPDVAHVI 51 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T-~~~~~G~d~~~v~~vi 51 (135)
+++|..+..=.+.+++.++++.+++|+++|+|+| .++..++-|.+..++|
T Consensus 671 PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 671 PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 4567777777899999999999999999999999 5788899999999987
No 176
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=92.69 E-value=0.14 Score=42.94 Aligned_cols=56 Identities=34% Similarity=0.529 Sum_probs=39.6
Q ss_pred cEEEecCCCcccccccCCc-----------EEEEecCCCCHHHHHHHhhhcCCCCCCceEEEEeecC
Q 037139 30 NVLVATDVAGRGIDIPDVA-----------HVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFH 85 (135)
Q Consensus 30 ~ilv~T~~~~~G~d~~~v~-----------~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~~~~~ 85 (135)
.|-|||+++++|.|+.--. +||=...-.|..-=-|..||+||.|.+|..-.+++-.
T Consensus 479 aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSle 545 (822)
T COG0653 479 AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLE 545 (822)
T ss_pred ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhH
Confidence 4679999999999984222 3444444445544569999999999888777666543
No 177
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.57 E-value=0.24 Score=43.34 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=42.7
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC-CCcccccccCCcEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-VAGRGIDIPDVAHVIN 52 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~-~~~~G~d~~~v~~vi~ 52 (135)
++++.+++|..+.+++.++++.+.+|.++|+|+|. .+...+.+.++.++|.
T Consensus 677 ~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 677 PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 46788899999999999999999999999999996 4444577778888773
No 178
>PRK14701 reverse gyrase; Provisional
Probab=88.95 E-value=0.85 Score=41.47 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=32.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 37 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~ 37 (135)
++.+..+||+++.+++.++++.+.+|+.+|||+|.-
T Consensus 152 ~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 152 DVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred ceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 456789999999999999999999999999999974
No 179
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=88.36 E-value=0.045 Score=45.06 Aligned_cols=76 Identities=21% Similarity=0.268 Sum_probs=63.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcC-CCcEE-EecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCce
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTK-RYNVL-VATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGV 77 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g-~~~il-v~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~ 77 (135)
|+....+-|.|+...|.+.+..|..+ ..+++ ++..+...|+|+-.+.+|+..|+-|++..--|.+-|+-|-|+.-.
T Consensus 563 ~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~ 640 (674)
T KOG1001|consen 563 GFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKP 640 (674)
T ss_pred ccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccce
Confidence 44555667899999999999999754 34455 577889999999999999999999999999999999999886543
No 180
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=88.21 E-value=2.1 Score=36.95 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=56.0
Q ss_pred CCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCC-----CC----Cce-EEEEeecCChhHHHHHHHHH
Q 037139 28 RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA-----GK----TGV-ATTFLTFHDTDVFYDLKQML 97 (135)
Q Consensus 28 ~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~-----~~----~g~-~~~~~~~~~~~~~~~~~~~~ 97 (135)
.++.+++-+++.+|.|.|++-.+..+.-..|...-.|.+||..|. |. ... ..++++....++...|.+-.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 578999999999999999998888888888888889999999883 21 112 22344556677788888777
Q ss_pred hhC
Q 037139 98 IQS 100 (135)
Q Consensus 98 ~~~ 100 (135)
+..
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 654
No 181
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=88.20 E-value=2.5 Score=36.60 Aligned_cols=65 Identities=23% Similarity=0.373 Sum_probs=47.9
Q ss_pred HHHHHH--HhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCC--C--CCceEEEEee
Q 037139 18 EISLEG--FRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA--G--KTGVATTFLT 83 (135)
Q Consensus 18 ~~~~~~--f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~--~--~~g~~~~~~~ 83 (135)
...... ......++||.++++-.|.|-|.+. .+.+|-|.-.-..+|.+.|+.|. + ..|.++.+..
T Consensus 581 ~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~-TmYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 581 KDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLN-TLYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hhhhhhhcCcCCCCCEEEEEccccccCCccccc-eEEeccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 344444 3556799999999999999999876 55667777777889999999994 2 2355555554
No 182
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.15 E-value=3.8 Score=33.13 Aligned_cols=47 Identities=26% Similarity=0.398 Sum_probs=37.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC------CCcccccccCCcEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD------VAGRGIDIPDVAHVIN 52 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~------~~~~G~d~~~v~~vi~ 52 (135)
|+.+.++||+++..++...++ -...|+|||. +--.++|+..+++++.
T Consensus 324 gl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rvS~LV~ 376 (731)
T KOG0339|consen 324 GLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRVSYLVL 376 (731)
T ss_pred cceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceeeeEEEE
Confidence 788999999999999888777 4468999997 2235789999988763
No 183
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=85.72 E-value=2 Score=36.53 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=55.9
Q ss_pred CCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCC--CCCc-----------eEEEEeecCChhHHHHHH
Q 037139 28 RYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRA--GKTG-----------VATTFLTFHDTDVFYDLK 94 (135)
Q Consensus 28 ~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~--~~~g-----------~~~~~~~~~~~~~~~~~~ 94 (135)
..+.+++-.++.+|.|-|+|=.+.-+....|..+=.|-+||.-|. +..| ...+++...+..+...+.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 478899999999999999999888899899999999999999883 1222 234556666777777777
Q ss_pred HHHhh
Q 037139 95 QMLIQ 99 (135)
Q Consensus 95 ~~~~~ 99 (135)
+.++.
T Consensus 563 kEI~~ 567 (985)
T COG3587 563 KEIND 567 (985)
T ss_pred HHHHH
Confidence 65543
No 184
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=85.25 E-value=1.7 Score=34.78 Aligned_cols=46 Identities=30% Similarity=0.532 Sum_probs=36.2
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC-----CCccc-ccccCCcEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-----VAGRG-IDIPDVAHVI 51 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~~G-~d~~~v~~vi 51 (135)
++.+.+++|+++...+...++ .| .+|+|+|+ .+.++ +++..+.++|
T Consensus 128 ~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~lV 179 (513)
T COG0513 128 GLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVETLV 179 (513)
T ss_pred CccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCEEE
Confidence 467899999999888775554 46 99999997 45555 8888888877
No 185
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=84.63 E-value=12 Score=30.46 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=33.3
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 37 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~ 37 (135)
+|+.+..+|++++..++..+++.+..|.++++++|.-
T Consensus 76 ~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe 112 (591)
T TIGR01389 76 AGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPE 112 (591)
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChh
Confidence 3678899999999999999999999999999998853
No 186
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=84.62 E-value=1.5 Score=38.76 Aligned_cols=48 Identities=10% Similarity=0.255 Sum_probs=35.4
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcc-ccc-cc-CCcEEEE
Q 037139 5 VTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGR-GID-IP-DVAHVIN 52 (135)
Q Consensus 5 v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~-G~d-~~-~v~~vi~ 52 (135)
+..+||+++..++...++.+.+|..+|+|+|..... .++ +. .++++|.
T Consensus 155 i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~~~iVv 205 (1171)
T TIGR01054 155 IGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKFDFIFV 205 (1171)
T ss_pred eeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCCCEEEE
Confidence 346899999999999999999999999999974221 111 12 5667664
No 187
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=83.37 E-value=1.7 Score=35.54 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=33.2
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD 36 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~ 36 (135)
.|+.+.++|+.++.+++..++.++..|.+++|.-++
T Consensus 80 ~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 80 AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECc
Confidence 488999999999999999999999999999996664
No 188
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=82.92 E-value=7.7 Score=32.51 Aligned_cols=88 Identities=25% Similarity=0.285 Sum_probs=53.6
Q ss_pred HHHHHHHh----cCCCcEEEec--CCCcccccccC--CcEEEEecCCCC----H--------------------------
Q 037139 18 EISLEGFR----TKRYNVLVAT--DVAGRGIDIPD--VAHVINYDMPGN----I-------------------------- 59 (135)
Q Consensus 18 ~~~~~~f~----~g~~~ilv~T--~~~~~G~d~~~--v~~vi~~d~p~~----~-------------------------- 59 (135)
+.+++.+. .|.-.||++. .-+++|+||.+ +++|+..++|.. +
T Consensus 673 ~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnl 752 (821)
T KOG1133|consen 673 EDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENL 752 (821)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 34555554 3444566554 56889999987 788998888753 0
Q ss_pred --HHHHHHhhhcCCCCCCceEEEEeecCChhHHHHHHHHHhhCCCCCChHHHHHHHhh
Q 037139 60 --EMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASK 115 (135)
Q Consensus 60 --~~~~qr~GR~gR~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 115 (135)
...-|.+|||=|.-++-.++.+++..-. ......+|.|+.......
T Consensus 753 CMkAVNQsIGRAIRH~~DYA~i~LlD~RY~----------~p~~RKLp~WI~~~v~s~ 800 (821)
T KOG1133|consen 753 CMKAVNQSIGRAIRHRKDYASIYLLDKRYA----------RPLSRKLPKWIRKRVHSK 800 (821)
T ss_pred HHHHHHHHHHHHHhhhccceeEEEehhhhc----------CchhhhccHHHHhHhccc
Confidence 1126889999987666445555543221 112227788886655443
No 189
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=75.80 E-value=16 Score=29.62 Aligned_cols=66 Identities=26% Similarity=0.377 Sum_probs=45.6
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC-----CCccc-ccccCCcEEEE------ecC--CCCHHHHHHHhh
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-----VAGRG-IDIPDVAHVIN------YDM--PGNIEMYTHRIG 67 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~~G-~d~~~v~~vi~------~d~--p~~~~~~~qr~G 67 (135)
+++..|++|+.+...+...+++ -++|+|+|. .+..| +|+..+.+++. +|+ -..+...+..+.
T Consensus 193 ~~~~~cvyGG~~~~~Q~~~l~~----gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~ 268 (519)
T KOG0331|consen 193 RLRSTCVYGGAPKGPQLRDLER----GVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIP 268 (519)
T ss_pred CccEEEEeCCCCccHHHHHHhc----CCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcC
Confidence 4568999999998887776652 368999996 45565 78888888873 222 224555666666
Q ss_pred hcCC
Q 037139 68 RTGR 71 (135)
Q Consensus 68 R~gR 71 (135)
+..|
T Consensus 269 ~~~r 272 (519)
T KOG0331|consen 269 RPDR 272 (519)
T ss_pred CCcc
Confidence 6554
No 190
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.93 E-value=11 Score=30.74 Aligned_cols=80 Identities=23% Similarity=0.207 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCCCcEEEecCC--CcccccccCCcEEEEecCCCCHHHH---HHHhhhcCCCC----CCceEEEEeec
Q 037139 14 QEQREISLEGFRTKRYNVLVATDV--AGRGIDIPDVAHVINYDMPGNIEMY---THRIGRTGRAG----KTGVATTFLTF 84 (135)
Q Consensus 14 ~~~r~~~~~~f~~g~~~ilv~T~~--~~~G~d~~~v~~vi~~d~p~~~~~~---~qr~GR~gR~~----~~g~~~~~~~~ 84 (135)
...-..+-+.|-.|..++|+-|.= .-+-.++..|.-||.|.+|..+.=| +.+.+|+--.| ....|.+++..
T Consensus 588 k~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytK 667 (698)
T KOG2340|consen 588 KSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTK 667 (698)
T ss_pred HhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeec
Confidence 333456677889999999999973 4466788899999999999986555 66666654322 12356666666
Q ss_pred CChhHHHHH
Q 037139 85 HDTDVFYDL 93 (135)
Q Consensus 85 ~~~~~~~~~ 93 (135)
-+.-.+..+
T Consensus 668 yD~i~Le~i 676 (698)
T KOG2340|consen 668 YDRIRLENI 676 (698)
T ss_pred hhhHHHHHh
Confidence 555444433
No 191
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.93 E-value=8.1 Score=30.51 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=32.8
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD 36 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~ 36 (135)
+|+.+..++++.+..++..++..+..++.+|+++|.
T Consensus 74 ~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TP 109 (470)
T TIGR00614 74 SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTP 109 (470)
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 367889999999999999999999999999999986
No 192
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=73.24 E-value=13 Score=30.95 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=33.4
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVI 51 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi 51 (135)
+|+++.++.|++++++|+... ..+|+++|.. +-|+|.-.-+.+.
T Consensus 171 lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~~-e~~FDyLrd~~~~ 214 (656)
T PRK12898 171 LGLTVGCVVEDQSPDERRAAY------GADITYCTNK-ELVFDYLRDRLAL 214 (656)
T ss_pred cCCEEEEEeCCCCHHHHHHHc------CCCEEEECCC-chhhhhccccccc
Confidence 588999999999988766643 4689999975 6788876655444
No 193
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=70.63 E-value=3.3 Score=36.72 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=45.6
Q ss_pred HHHHHHhcCCCcEE-EecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCC
Q 037139 19 ISLEGFRTKRYNVL-VATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKT 75 (135)
Q Consensus 19 ~~~~~f~~g~~~il-v~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~ 75 (135)
..+..|++ +++| +-+...+.|+|+-+..+|+..++-.++..-.|.+||.-|.|+.
T Consensus 1259 dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~ 1314 (1394)
T KOG0298|consen 1259 DCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQK 1314 (1394)
T ss_pred hhhhhccc--ceEEEEEeccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccc
Confidence 34444444 6655 6678889999999999999999999999999999999998865
No 194
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=68.41 E-value=7.6 Score=25.10 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCCcEEEecCCCcccccccC------CcEEEEec
Q 037139 18 EISLEGFRTKRYNVLVATDVAGRGIDIPD------VAHVINYD 54 (135)
Q Consensus 18 ~~~~~~f~~g~~~ilv~T~~~~~G~d~~~------v~~vi~~d 54 (135)
.++++++.+|++.+.|-|.--.-++|++. -++||.||
T Consensus 64 ~emi~~l~~geIel~VLttqpDIai~l~~kVldnEnRYViDFD 106 (144)
T PF10657_consen 64 PEMIDKLISGEIELFVLTTQPDIAINLQQKVLDNENRYVIDFD 106 (144)
T ss_pred HHHHHHHhcCceEEEEEccCCCeeechhhhhhcccceEEEecc
Confidence 68899999999999998877677777753 35788888
No 195
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=66.66 E-value=19 Score=30.76 Aligned_cols=76 Identities=18% Similarity=0.276 Sum_probs=45.7
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCC--cEEEEecCC----CCHHHHHHHhhhcCCCCCCc
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV--AHVINYDMP----GNIEMYTHRIGRTGRAGKTG 76 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v--~~vi~~d~p----~~~~~~~qr~GR~gR~~~~g 76 (135)
.+|..++|.-+..+ + +. =++.+|++=|+++..|+++... +-+.-|=-| .+..+..|++||+.... ..
T Consensus 307 ~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ 379 (824)
T PF02399_consen 307 KKVLVLNSTDKLED---V-ES--WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DN 379 (824)
T ss_pred CeEEEEcCCCCccc---c-cc--ccceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cC
Confidence 35566665544431 1 11 2568899999999999999643 334333112 24556899999995543 33
Q ss_pred eEEEEeecC
Q 037139 77 VATTFLTFH 85 (135)
Q Consensus 77 ~~~~~~~~~ 85 (135)
..+++++..
T Consensus 380 ei~v~~d~~ 388 (824)
T PF02399_consen 380 EIYVYIDAS 388 (824)
T ss_pred eEEEEEecc
Confidence 455555543
No 196
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=66.40 E-value=14 Score=32.89 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=32.7
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhc--CCCcEEEecC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRT--KRYNVLVATD 36 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~--g~~~ilv~T~ 36 (135)
.|+++..++++++..++.++++.+.. |+++||++|.
T Consensus 523 ~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 523 ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 37889999999999999999999987 8999999997
No 197
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=65.97 E-value=11 Score=32.64 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=28.1
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 37 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~ 37 (135)
+|++|.++.+++++++|..++. ++|+++|..
T Consensus 150 lGl~v~~i~~~~~~~err~~Y~------~dI~YGT~~ 180 (913)
T PRK13103 150 LGLSVGIVTPFQPPEEKRAAYA------ADITYGTNN 180 (913)
T ss_pred cCCEEEEECCCCCHHHHHHHhc------CCEEEEccc
Confidence 5899999999999999998887 789999975
No 198
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=65.89 E-value=9.6 Score=29.89 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=35.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC-----CCc-ccccccCCcEEEEec
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-----VAG-RGIDIPDVAHVINYD 54 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~-~G~d~~~v~~vi~~d 54 (135)
++.+..++|+.+...+...++ ...+|+|+|. .+. ..+++.+++++|.-+
T Consensus 101 ~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDE 155 (460)
T PRK11776 101 NIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDE 155 (460)
T ss_pred CcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHCCEEEEEC
Confidence 467888999998877665444 5678999994 233 346788888887433
No 199
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=65.73 E-value=11 Score=31.74 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=26.4
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 37 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~ 37 (135)
+|+++.++.|++++++|...+. .+|+++|..
T Consensus 124 LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 124 LGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred CCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 5899999999999988777663 689999976
No 200
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=64.53 E-value=18 Score=28.06 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=34.7
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC------CcccccccCCcEEEEec
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV------AGRGIDIPDVAHVINYD 54 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~------~~~G~d~~~v~~vi~~d 54 (135)
++++..++|+.+...+...+. +..+|+|+|.- ....+++..+++||.-+
T Consensus 101 ~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDE 155 (434)
T PRK11192 101 HLDIATITGGVAYMNHAEVFS----ENQDIVVATPGRLLQYIKEENFDCRAVETLILDE 155 (434)
T ss_pred CcEEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCcCcccCCEEEEEC
Confidence 567889999998877665543 56789999961 12346777888877543
No 201
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=62.55 E-value=18 Score=29.68 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=32.2
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD 36 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~ 36 (135)
+|+.+.+++++++.+++..++..+..|+++++++|.
T Consensus 88 ~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 88 NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 367888999999999999999999999999999884
No 202
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=60.74 E-value=13 Score=30.29 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=32.9
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC-----CCcc--cccccCCcEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-----VAGR--GIDIPDVAHVIN 52 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~~--G~d~~~v~~vi~ 52 (135)
|+.+..+||+.+...+...++ ...+|||+|. .+.. .+++..+.++|.
T Consensus 112 ~i~v~~l~Gg~~~~~q~~~l~----~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 112 GLRFALVYGGVDYDKQRELLQ----QGVDVIIATPGRLIDYVKQHKVVSLHACEICVL 165 (572)
T ss_pred CceEEEEECCCCHHHHHHHHh----CCCCEEEECHHHHHHHHHhccccchhheeeeEe
Confidence 677899999998877665553 4678999995 2222 356667777664
No 203
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=60.48 E-value=13 Score=27.97 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHhcCCCcEEEecCCCc
Q 037139 13 SQEQREISLEGFRTKRYNVLVATDVAG 39 (135)
Q Consensus 13 ~~~~r~~~~~~f~~g~~~ilv~T~~~~ 39 (135)
++++|+..++.+++|.++++|+||-+.
T Consensus 219 ~~~d~~~L~~~l~~G~id~~i~SDHaP 245 (335)
T cd01294 219 RPEDREALRKAATSGHPKFFLGSDSAP 245 (335)
T ss_pred CHHHHHHHHHHHHcCCCCeEEECCCCC
Confidence 478899999999999999999999754
No 204
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=60.47 E-value=12 Score=30.70 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=35.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC-----CCccc----ccccCCcEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-----VAGRG----IDIPDVAHVIN 52 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~~G----~d~~~v~~vi~ 52 (135)
|+++..+.|||+...++.++++ .-+|+|||. ++.++ =+|..+.|+|.
T Consensus 291 ~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVl 346 (731)
T KOG0347|consen 291 QIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVL 346 (731)
T ss_pred CeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhhceEEEE
Confidence 6889999999999999999987 557899997 23333 24567777664
No 205
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=60.46 E-value=16 Score=31.58 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=26.3
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 37 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~ 37 (135)
+|+++.+++|++++.+|...+ ..+|+++|.-
T Consensus 150 lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~g 180 (896)
T PRK13104 150 LGLTVGVIYPDMSHKEKQEAY------KADIVYGTNN 180 (896)
T ss_pred cCceEEEEeCCCCHHHHHHHh------CCCEEEECCh
Confidence 588999999999999987766 4789999974
No 206
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=60.18 E-value=13 Score=32.37 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=32.7
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcC--CCcEEEecC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTK--RYNVLVATD 36 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g--~~~ilv~T~ 36 (135)
.++++.+++++++..+|..+++.+.+| .++||-.|.
T Consensus 327 ~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtP 364 (941)
T KOG0351|consen 327 KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTP 364 (941)
T ss_pred cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCH
Confidence 378899999999999999999999999 899997765
No 207
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=59.87 E-value=35 Score=28.06 Aligned_cols=57 Identities=25% Similarity=0.226 Sum_probs=39.4
Q ss_pred CCCcEE--EecCCCcccccccCCc--EEEEecCCCCHHH------------------------------HHHHhhhcCCC
Q 037139 27 KRYNVL--VATDVAGRGIDIPDVA--HVINYDMPGNIEM------------------------------YTHRIGRTGRA 72 (135)
Q Consensus 27 g~~~il--v~T~~~~~G~d~~~v~--~vi~~d~p~~~~~------------------------------~~qr~GR~gR~ 72 (135)
|.-.|| |+-.-..+|+|+.+-. .||+++.|....+ -.|..||+-|.
T Consensus 589 gRGavl~sVargkVsEgidF~hhyGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr~ 668 (755)
T KOG1131|consen 589 GRGAVLLSVARGKVSEGIDFDHHYGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLRG 668 (755)
T ss_pred CCCceEEEEecCccccCcccccccCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHhc
Confidence 444555 6677889999998865 8999999974221 16888999886
Q ss_pred CCCceEEEEeec
Q 037139 73 GKTGVATTFLTF 84 (135)
Q Consensus 73 ~~~g~~~~~~~~ 84 (135)
..+ +.++++..
T Consensus 669 K~d-Yg~mI~aD 679 (755)
T KOG1131|consen 669 KTD-YGLMIFAD 679 (755)
T ss_pred ccc-ceeeEeee
Confidence 543 45555443
No 208
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=56.64 E-value=31 Score=27.13 Aligned_cols=48 Identities=23% Similarity=0.271 Sum_probs=32.6
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC------CcccccccCCcEEEEe
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV------AGRGIDIPDVAHVINY 53 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~------~~~G~d~~~v~~vi~~ 53 (135)
++.+..++|+.+...+...+ .+..+|+|||.- ....+++..++++|.-
T Consensus 103 ~~~~~~~~gg~~~~~~~~~l----~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViD 156 (456)
T PRK10590 103 NIRSLVVFGGVSINPQMMKL----RGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLD 156 (456)
T ss_pred CCEEEEEECCcCHHHHHHHH----cCCCcEEEEChHHHHHHHHcCCcccccceEEEee
Confidence 46677888998876654332 367899999961 2334677888887743
No 209
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=56.59 E-value=16 Score=31.37 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=29.3
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccc
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDI 44 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~ 44 (135)
+|+++.++.|++++++|..++. .+|+++|.. .-|+|.
T Consensus 149 LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~~-elgfDy 185 (830)
T PRK12904 149 LGLSVGVILSGMSPEERREAYA------ADITYGTNN-EFGFDY 185 (830)
T ss_pred cCCeEEEEcCCCCHHHHHHhcC------CCeEEECCc-chhhhh
Confidence 5899999999999999988864 789999964 334443
No 210
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=56.13 E-value=19 Score=29.86 Aligned_cols=47 Identities=21% Similarity=0.356 Sum_probs=33.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC-----CCcc-cccccCCcEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-----VAGR-GIDIPDVAHVIN 52 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~~-G~d~~~v~~vi~ 52 (135)
|+.+..+||+.+.+.+...++ ...+|+|+|. .+.+ .+++.++.+||.
T Consensus 103 ~i~v~~~~gG~~~~~q~~~l~----~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVl 155 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLRALR----QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVL 155 (629)
T ss_pred CceEEEEECCcCHHHHHHHhc----CCCCEEEECHHHHHHHHHcCCcchhhceEEEe
Confidence 577889999988776555442 4578999995 3333 367788887774
No 211
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=52.30 E-value=71 Score=21.58 Aligned_cols=49 Identities=22% Similarity=0.348 Sum_probs=32.2
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC-----Ccc-cccccCCcEEEEec
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-----AGR-GIDIPDVAHVINYD 54 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~~-G~d~~~v~~vi~~d 54 (135)
++.+..++|+.+..+....++ +..+|+|||.- +.. -.++++++++|.-+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE 151 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDE 151 (203)
T ss_pred CceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeC
Confidence 466788899888766554333 66789999952 222 25667788877443
No 212
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=50.01 E-value=43 Score=25.95 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=32.7
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC-----C-cccccccCCcEEEEe
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-----A-GRGIDIPDVAHVINY 53 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~-~~G~d~~~v~~vi~~ 53 (135)
|+++..++|+.+...+...++ ...+|+|+|.- + ...+++..+.++|.-
T Consensus 111 ~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViD 164 (423)
T PRK04837 111 GLKLGLAYGGDGYDKQLKVLE----SGVDILIGTTGRLIDYAKQNHINLGAIQVVVLD 164 (423)
T ss_pred CceEEEEECCCCHHHHHHHhc----CCCCEEEECHHHHHHHHHcCCcccccccEEEEe
Confidence 678889999987666544332 45789999972 2 234677788887743
No 213
>PRK05451 dihydroorotase; Provisional
Probab=49.89 E-value=24 Score=26.79 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEecCCCc
Q 037139 12 KSQEQREISLEGFRTKRYNVLVATDVAG 39 (135)
Q Consensus 12 ~~~~~r~~~~~~f~~g~~~ilv~T~~~~ 39 (135)
-++++|+..++.+++|.++++|+||-+.
T Consensus 224 R~~~d~~aLw~~l~~G~Id~~i~SDHaP 251 (345)
T PRK05451 224 KRETHRQALREAATSGNPKFFLGTDSAP 251 (345)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEeCCCCC
Confidence 4578899999999999999888998654
No 214
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=49.06 E-value=32 Score=29.50 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=29.4
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcC--CCcEEEecCCCcc
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTK--RYNVLVATDVAGR 40 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g--~~~ilv~T~~~~~ 40 (135)
++|.+|||. +.+|+++-..+..+ .++||++|--++.
T Consensus 474 l~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY~la~ 511 (941)
T KOG0389|consen 474 LKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTYNLAA 511 (941)
T ss_pred eEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEeeccc
Confidence 578899998 58899999999876 8899999865443
No 215
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=46.98 E-value=21 Score=28.79 Aligned_cols=49 Identities=29% Similarity=0.332 Sum_probs=37.2
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC------CCcccccccCCcEEEEecCCC
Q 037139 4 RVTTLHGGKSQEQREISLEGFRTKRYNVLVATD------VAGRGIDIPDVAHVINYDMPG 57 (135)
Q Consensus 4 ~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~------~~~~G~d~~~v~~vi~~d~p~ 57 (135)
.+..+.|..++++|++.+.. .+|+|+|. +.+--+|+.++.++|.-....
T Consensus 88 ~i~~ltGev~p~~R~~~w~~-----~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHR 142 (542)
T COG1111 88 EIAALTGEVRPEEREELWAK-----KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHR 142 (542)
T ss_pred heeeecCCCChHHHHHHHhh-----CCEEEeccHHHHhHHhcCccChHHceEEEechhhh
Confidence 46789999999999987763 47999996 333348999999888655444
No 216
>PHA03371 circ protein; Provisional
Probab=45.54 E-value=23 Score=25.52 Aligned_cols=46 Identities=28% Similarity=0.370 Sum_probs=28.6
Q ss_pred CCcccccccCCcEE-EEecCCC-------------CHHHHHHHhhhcCCCCCCceEEEEe
Q 037139 37 VAGRGIDIPDVAHV-INYDMPG-------------NIEMYTHRIGRTGRAGKTGVATTFL 82 (135)
Q Consensus 37 ~~~~G~d~~~v~~v-i~~d~p~-------------~~~~~~qr~GR~gR~~~~g~~~~~~ 82 (135)
+.++-+|+|.=+-+ |..|.+. +...|+|.+|||.-.|..-+.+++.
T Consensus 29 LaGR~vDLPgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRAya~g~~RkF~iyl 88 (240)
T PHA03371 29 LAGRTVDLPGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRAYAIGSGRKFVIYL 88 (240)
T ss_pred hcCcceecCCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehhhccCCCceEEEEE
Confidence 45677888887666 6445443 4456799999996655333344433
No 217
>TIGR00856 pyrC_dimer dihydroorotase, homodimeric type. This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes.
Probab=44.02 E-value=34 Score=25.97 Aligned_cols=29 Identities=21% Similarity=0.114 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEecCCCcc
Q 037139 12 KSQEQREISLEGFRTKRYNVLVATDVAGR 40 (135)
Q Consensus 12 ~~~~~r~~~~~~f~~g~~~ilv~T~~~~~ 40 (135)
-++++|+..++.+++|.++++|+||-...
T Consensus 221 R~~~d~~aL~~~l~~G~id~~i~SDHaP~ 249 (341)
T TIGR00856 221 KRNIHQQALLELAASGFPKFFLGTDSAPH 249 (341)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEeCCCCCC
Confidence 35788999999999999998889986543
No 218
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=43.64 E-value=7.2 Score=35.60 Aligned_cols=56 Identities=14% Similarity=0.094 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcC
Q 037139 15 EQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTG 70 (135)
Q Consensus 15 ~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~g 70 (135)
..|.....+|..+++..+++|+....|.++-.++.|+.++.-.+...+.|..|++.
T Consensus 708 ~~rn~~~~~~~~~~v~~~~~pss~~~g~~~~~~~~v~~~~~~~~i~~~~q~~~~~~ 763 (1606)
T KOG0701|consen 708 MYRNDDQPQFYVAEVLPLLAPSSLFPGLDYETFNEVYRFKYALTITSLNQSLLDVD 763 (1606)
T ss_pred hhhcccccceeeeeeeeeccchhcCCCcchheeeeeeeccccchhhhccccccccc
Confidence 35566667777888999999999999999999999999999999999999999884
No 219
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=43.64 E-value=32 Score=26.80 Aligned_cols=74 Identities=9% Similarity=-0.081 Sum_probs=43.3
Q ss_pred HHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEEeecCChhHHHHHHH
Q 037139 21 LEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTDVFYDLKQ 95 (135)
Q Consensus 21 ~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~~~~~~~~~~~~~~~ 95 (135)
...++...+++..|+.-...+.+-..+.-+.+.-...++..+..+..|. .....+.-+.++++.+.......++
T Consensus 115 ~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaDEmLs~gfkd 188 (397)
T KOG0327|consen 115 RALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEADEMLSRGFKD 188 (397)
T ss_pred HhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecchHhhhccchHH
Confidence 5556667788888887666665555554444455555666666666554 5555565666665544433333333
No 220
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=42.23 E-value=34 Score=29.30 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=24.3
Q ss_pred CCceEEEecCCCC-HHHHHHHHHHHhcCCCcEEEecC
Q 037139 1 LGYRVTTLHGGKS-QEQREISLEGFRTKRYNVLVATD 36 (135)
Q Consensus 1 ~g~~v~~~hg~~~-~~~r~~~~~~f~~g~~~ilv~T~ 36 (135)
+|++++++.|+++ +++|+.+.. .+|+++|.
T Consensus 146 lGl~v~~i~g~~~~~~~r~~~y~------~dIvygT~ 176 (790)
T PRK09200 146 LGLTVGLNFSDIDDASEKKAIYE------ADIIYTTN 176 (790)
T ss_pred cCCeEEEEeCCCCcHHHHHHhcC------CCEEEECC
Confidence 5899999999999 888775432 78999994
No 221
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=39.66 E-value=50 Score=28.93 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=25.3
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 37 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~ 37 (135)
+|+++.++.|+++.+++...+ ..+|+++|.-
T Consensus 162 lGLsV~~i~GG~~~~eq~~~y------~~DIVygTPg 192 (970)
T PRK12899 162 LGLTTGVLVSGSPLEKRKEIY------QCDVVYGTAS 192 (970)
T ss_pred cCCeEEEEeCCCCHHHHHHHc------CCCEEEECCC
Confidence 478899999999999887554 3789999974
No 222
>PTZ00110 helicase; Provisional
Probab=38.93 E-value=54 Score=26.59 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=32.1
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC-----CCccc-ccccCCcEEEEe
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-----VAGRG-IDIPDVAHVINY 53 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~~G-~d~~~v~~vi~~ 53 (135)
++++.+++|+.+...+...+ .. ..+|+|+|. .+..+ +++..+.+||.-
T Consensus 231 ~i~~~~~~gg~~~~~q~~~l---~~-~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViD 284 (545)
T PTZ00110 231 KIRNTVAYGGVPKRGQIYAL---RR-GVEILIACPGRLIDFLESNVTNLRRVTYLVLD 284 (545)
T ss_pred CccEEEEeCCCCHHHHHHHH---Hc-CCCEEEECHHHHHHHHHcCCCChhhCcEEEee
Confidence 46678889998876654443 33 378999995 33333 567778877743
No 223
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=38.38 E-value=22 Score=17.04 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=7.9
Q ss_pred hcCCCcEEEecC
Q 037139 25 RTKRYNVLVATD 36 (135)
Q Consensus 25 ~~g~~~ilv~T~ 36 (135)
+.|.++|+|+|+
T Consensus 1 r~g~LqI~ISTn 12 (30)
T PF14824_consen 1 RRGPLQIAISTN 12 (30)
T ss_dssp --TTEEEEEEES
T ss_pred CCCCeEEEEECC
Confidence 357778888886
No 224
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=38.10 E-value=78 Score=19.19 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=33.9
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcC---CCc-EEEecCCCcccccccCCcE----EEEec
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTK---RYN-VLVATDVAGRGIDIPDVAH----VINYD 54 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g---~~~-ilv~T~~~~~G~d~~~v~~----vi~~d 54 (135)
+...++=|++|..-|+.+.+...+. +-+ +|+=++--+.|+++..... ++.+|
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~~~r~~vd~D 83 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGENRKEIVEID 83 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCCCCccEEecC
Confidence 3456677899999999999888664 223 4443444477888765432 55554
No 225
>PRK09401 reverse gyrase; Reviewed
Probab=37.90 E-value=61 Score=29.14 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=31.3
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCcEEEecCCC-c---ccccccCCcEEEE
Q 037139 7 TLHGGKSQEQREISLEGFRTKRYNVLVATDVA-G---RGIDIPDVAHVIN 52 (135)
Q Consensus 7 ~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~-~---~G~d~~~v~~vi~ 52 (135)
..|++++.+++.+..+.+..+..+|+|+|.-. . ..+....++++|.
T Consensus 158 ~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVv 207 (1176)
T PRK09401 158 YYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFV 207 (1176)
T ss_pred EccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEE
Confidence 34556677888888999999999999999621 1 1233334676663
No 226
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=36.78 E-value=81 Score=20.35 Aligned_cols=47 Identities=28% Similarity=0.437 Sum_probs=29.5
Q ss_pred CceEEEecCCCCHH-HHHHHHHHHhcCCCcEEEecCC-----Cc-ccccccCCcEEEE
Q 037139 2 GYRVTTLHGGKSQE-QREISLEGFRTKRYNVLVATDV-----AG-RGIDIPDVAHVIN 52 (135)
Q Consensus 2 g~~v~~~hg~~~~~-~r~~~~~~f~~g~~~ilv~T~~-----~~-~G~d~~~v~~vi~ 52 (135)
++.+..+|++.+.. +....+ .++.+|+|+|.. +. ...++..+++||.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iVi 125 (169)
T PF00270_consen 72 NVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDLISNGKINISRLSLIVI 125 (169)
T ss_dssp TSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEE
T ss_pred ccccccccccccccccccccc----cccccccccCcchhhccccccccccccceeecc
Confidence 45778889988754 333333 677899999852 11 2235666777664
No 227
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=36.61 E-value=22 Score=21.43 Aligned_cols=21 Identities=10% Similarity=0.233 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCCcEEEecCC
Q 037139 17 REISLEGFRTKRYNVLVATDV 37 (135)
Q Consensus 17 r~~~~~~f~~g~~~ilv~T~~ 37 (135)
+..+.+.+++|+++++|+|..
T Consensus 49 ~~~i~~~i~~~~IdlVIn~~~ 69 (95)
T PF02142_consen 49 RVQIMDLIKNGKIDLVINTPY 69 (95)
T ss_dssp CHHHHHHHHTTSEEEEEEE--
T ss_pred hhHHHHHHHcCCeEEEEEeCC
Confidence 446889999999988887753
No 228
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=34.83 E-value=89 Score=18.86 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=33.9
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhc----CCCcEEEecCCCcccccccCC----cEEEEec
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRT----KRYNVLVATDVAGRGIDIPDV----AHVINYD 54 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~----g~~~ilv~T~~~~~G~d~~~v----~~vi~~d 54 (135)
++..++=|+++..-|+.+.+...+ |..-++-.++- +.|+++... ..++.+|
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~n-eqG~~~~t~G~~~r~~vD~D 82 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNN-EQGFDFRTLGDPRREPVDFD 82 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCC-CCCEEEEEeCCCCCcEEecC
Confidence 345567789999999999999876 33323334444 888888544 3355555
No 229
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=34.74 E-value=1.8e+02 Score=24.32 Aligned_cols=30 Identities=30% Similarity=0.438 Sum_probs=19.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD 36 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~ 36 (135)
+|+++.+-||..-+ .+.-+-..++|||||.
T Consensus 169 ~fSaGLiiGG~~~k-----~E~eRi~~mNILVCTP 198 (758)
T KOG0343|consen 169 DFSAGLIIGGKDVK-----FELERISQMNILVCTP 198 (758)
T ss_pred ccccceeecCchhH-----HHHHhhhcCCeEEech
Confidence 46667777775432 3334456789999996
No 230
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=34.72 E-value=45 Score=29.36 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=30.8
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV 47 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v 47 (135)
+|++|+++..+|++++|..++. .+|.-+|.. +-|+|.-.-
T Consensus 206 lGLtVg~i~~~~~~~~Rr~aY~------~DItYgTn~-EfGFDYLRD 245 (1025)
T PRK12900 206 HGLSVGVILNTMRPEERREQYL------CDITYGTNN-EFGFDYLRD 245 (1025)
T ss_pred hCCeeeeeCCCCCHHHHHHhCC------CcceecCCC-ccccccchh
Confidence 6899999999999999987665 677777764 567766443
No 231
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=34.71 E-value=24 Score=26.43 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=15.6
Q ss_pred CCcEEEecCCCcccccccCCc
Q 037139 28 RYNVLVATDVAGRGIDIPDVA 48 (135)
Q Consensus 28 ~~~ilv~T~~~~~G~d~~~v~ 48 (135)
+.+|||..+--..=+|||.+-
T Consensus 230 efNIlV~~dg~~~vIDwPQ~v 250 (304)
T COG0478 230 EFNILVTEDGDIVVIDWPQAV 250 (304)
T ss_pred hheEEEecCCCEEEEeCcccc
Confidence 468999997666668888753
No 232
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=34.39 E-value=60 Score=27.68 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=27.3
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccc
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDI 44 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~ 44 (135)
+|++|+++.+++++++|..+++ .+|.-+|.. +-|+|.
T Consensus 146 LGLsvg~i~~~~~~~err~aY~------~DItYgTn~-e~gFDy 182 (764)
T PRK12326 146 LGLTVGWITEESTPEERRAAYA------CDVTYASVN-EIGFDV 182 (764)
T ss_pred cCCEEEEECCCCCHHHHHHHHc------CCCEEcCCc-cccccc
Confidence 5899999999999999998775 456666642 444444
No 233
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=33.85 E-value=18 Score=26.11 Aligned_cols=15 Identities=40% Similarity=0.680 Sum_probs=12.7
Q ss_pred eEEEecCCCCHHHHH
Q 037139 4 RVTTLHGGKSQEQRE 18 (135)
Q Consensus 4 ~v~~~hg~~~~~~r~ 18 (135)
++.++||++||+-|.
T Consensus 158 ~vLCVHGGLSPdirt 172 (306)
T KOG0373|consen 158 KVLCVHGGLSPDIRT 172 (306)
T ss_pred cEEEEcCCCCcccee
Confidence 688999999999653
No 234
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=33.71 E-value=55 Score=28.57 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=27.3
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccc
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDI 44 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~ 44 (135)
+|++|+++.++|++++|..++. .+|+.+|.. +-|+|.
T Consensus 153 LGLtvg~i~~~~~~~err~aY~------~DItYgTn~-e~gFDY 189 (939)
T PRK12902 153 LGLSVGLIQQDMSPEERKKNYA------CDITYATNS-ELGFDY 189 (939)
T ss_pred hCCeEEEECCCCChHHHHHhcC------CCeEEecCC-cccccc
Confidence 5899999999999999987664 567777653 334443
No 235
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=32.95 E-value=56 Score=16.87 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=17.6
Q ss_pred ChhHHHHHHHHHhhCCCCCChHH
Q 037139 86 DTDVFYDLKQMLIQSNSPVPPEL 108 (135)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l 108 (135)
+.-..+.+.+++.....++|.||
T Consensus 19 dT~v~r~l~~yY~~k~~~~P~WL 41 (41)
T PF14475_consen 19 DTHVHRVLRKYYTEKGRPFPGWL 41 (41)
T ss_pred hhHHHHHHHHHHHHcCCCCCCcC
Confidence 34456778888888899998875
No 236
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=32.46 E-value=61 Score=20.41 Aligned_cols=21 Identities=0% Similarity=-0.198 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCCcEEEecCC
Q 037139 17 REISLEGFRTKRYNVLVATDV 37 (135)
Q Consensus 17 r~~~~~~f~~g~~~ilv~T~~ 37 (135)
+..+.+.+++|+++.+|.|..
T Consensus 59 ~~~i~~~i~~g~i~~VInt~~ 79 (115)
T cd01422 59 DQQIGALIAEGEIDAVIFFRD 79 (115)
T ss_pred hhHHHHHHHcCceeEEEEcCC
Confidence 467888889999888888753
No 237
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=32.27 E-value=1.4e+02 Score=20.51 Aligned_cols=30 Identities=13% Similarity=0.258 Sum_probs=17.6
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTKRYNVL 32 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~il 32 (135)
+.+.-.||-.++++.+.+++..+....++|
T Consensus 75 l~i~g~~g~f~~~~~~~i~~~I~~s~~dil 104 (177)
T TIGR00696 75 LKIVGAFGPLEPEERKAALAKIARSGAGIV 104 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHHHHcCCCEE
Confidence 344444666666666666666666555544
No 238
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=32.25 E-value=84 Score=27.15 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=26.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHH-hcCCCcEEEecC
Q 037139 2 GYRVTTLHGGKSQEQREISLEGF-RTKRYNVLVATD 36 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f-~~g~~~ilv~T~ 36 (135)
++.+.++||+ +++|....+.+ ..+..+|+|+|=
T Consensus 242 ~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTsY 275 (971)
T KOG0385|consen 242 SLNVVVYHGD--KEERAALRRDIMLPGRFDVCITSY 275 (971)
T ss_pred CcceEEEeCC--HHHHHHHHHHhhccCCCceEeehH
Confidence 4678999998 58888888777 456899999884
No 239
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=32.17 E-value=54 Score=19.36 Aligned_cols=19 Identities=11% Similarity=0.121 Sum_probs=14.5
Q ss_pred HHHHHHHhcCCCcEEEecC
Q 037139 18 EISLEGFRTKRYNVLVATD 36 (135)
Q Consensus 18 ~~~~~~f~~g~~~ilv~T~ 36 (135)
..+++.+++|+++++|.|.
T Consensus 45 ~~i~~~i~~g~id~VIn~~ 63 (90)
T smart00851 45 LAILDLIKNGEIDLVINTL 63 (90)
T ss_pred HHHHHHhcCCCeEEEEECC
Confidence 3577888888888888775
No 240
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=31.58 E-value=97 Score=24.46 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=32.7
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC------CcccccccCCcEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV------AGRGIDIPDVAHVIN 52 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~------~~~G~d~~~v~~vi~ 52 (135)
|+.+..++|+.+...+. +.+..+..+|+|+|.- -...+.+..+++||.
T Consensus 190 ~~~v~~~~gg~~~~~~~---~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 190 GLNVMTFVGGMDFDKQL---KQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred CCEEEEEEccCChHHHH---HHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 56788899988765543 4555678899999962 122455667777764
No 241
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=31.45 E-value=99 Score=17.20 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=20.5
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCccc
Q 037139 4 RVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRG 41 (135)
Q Consensus 4 ~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G 41 (135)
.+....|.....+....++.+... -+|++++|.-..|
T Consensus 24 ~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~D~~G 60 (76)
T smart00493 24 NVVALGGHLLKKEIIKLLKRLAKK-KEVILATDPDREG 60 (76)
T ss_pred EEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCCChhH
Confidence 344444555455555666665443 5688888754333
No 242
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=31.27 E-value=82 Score=29.16 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=34.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC-----Cc-cc-ccccCCcEEEEe
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-----AG-RG-IDIPDVAHVINY 53 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~-~G-~d~~~v~~vi~~ 53 (135)
++++...||+.+.++|.+.++ ...+|||+|.- +. +. ..+.++++||.-
T Consensus 77 ~i~V~vrtGDt~~~eR~rll~----~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVD 131 (1490)
T PRK09751 77 NLRVGIRTGDTPAQERSKLTR----NPPDILITTPESLYLMLTSRARETLRGVETVIID 131 (1490)
T ss_pred ceEEEEEECCCCHHHHHHHhc----CCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEe
Confidence 578999999999999877544 45689999962 22 22 356788888743
No 243
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=30.76 E-value=1.6e+02 Score=20.40 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=27.8
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD 36 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~ 36 (135)
+|+.+..+.++.+++...+.++.+.+..++-+|.+.
T Consensus 28 ~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~ 63 (259)
T cd01542 28 NGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLA 63 (259)
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 477887777777788888888889888888776543
No 244
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=30.53 E-value=68 Score=25.65 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=13.8
Q ss_pred HHHhhhcCCCCCCceEEEEeecCChhHH
Q 037139 63 THRIGRTGRAGKTGVATTFLTFHDTDVF 90 (135)
Q Consensus 63 ~qr~GR~gR~~~~g~~~~~~~~~~~~~~ 90 (135)
.--+-|+||.|+.|..=.-++.-....+
T Consensus 547 eeYVHRvGrtGRaGr~G~sis~lt~~D~ 574 (629)
T KOG0336|consen 547 EEYVHRVGRTGRAGRTGTSISFLTRNDW 574 (629)
T ss_pred HHHHHHhcccccCCCCcceEEEEehhhH
Confidence 4455566666655554444444333333
No 245
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=29.18 E-value=29 Score=29.79 Aligned_cols=48 Identities=27% Similarity=0.358 Sum_probs=33.7
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCC-c---c----cccccCCcEEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVA-G---R----GIDIPDVAHVIN 52 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~-~---~----G~d~~~v~~vi~ 52 (135)
.|+.+..-||+.++.+|.+..+ .--+||++|.-- . - --.+.++.+||.
T Consensus 100 ~G~~v~vRhGDT~~~er~r~~~----~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIV 155 (814)
T COG1201 100 LGIEVAVRHGDTPQSEKQKMLK----NPPHILITTPESLAILLNSPKFRELLRDVRYVIV 155 (814)
T ss_pred cCCccceecCCCChHHhhhccC----CCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEe
Confidence 4788899999999999987655 446799999721 1 1 123457777773
No 246
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=29.06 E-value=76 Score=27.31 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=27.0
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccc
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDI 44 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~ 44 (135)
+|++|+++.+++++++|..++. .+|.-+|.. +-|+|.
T Consensus 148 LGl~vg~i~~~~~~~~r~~~y~------~dI~Y~t~~-e~gfDy 184 (796)
T PRK12906 148 LGLTVGLNLNSMSPDEKRAAYN------CDITYSTNS-ELGFDY 184 (796)
T ss_pred cCCeEEEeCCCCCHHHHHHHhc------CCCeecCCc-cccccc
Confidence 6899999999999999987664 456666643 444444
No 247
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=28.66 E-value=1e+02 Score=22.72 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=21.2
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD 36 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~ 36 (135)
+|+++.++++++++++|.+.++ .+|.-+|.
T Consensus 145 LGlsv~~~~~~~~~~~r~~~Y~------~dI~Y~t~ 174 (266)
T PF07517_consen 145 LGLSVGIITSDMSSEERREAYA------ADIVYGTN 174 (266)
T ss_dssp TT--EEEEETTTEHHHHHHHHH------SSEEEEEH
T ss_pred hhhccccCccccCHHHHHHHHh------Cccccccc
Confidence 6889999999999988887665 34666653
No 248
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=28.40 E-value=2.7e+02 Score=21.19 Aligned_cols=63 Identities=19% Similarity=0.214 Sum_probs=41.6
Q ss_pred EEEecCCCCHHHHHHHhhhcC----CCCCCceEEEEeecCChhHHHHHHHHHhhCCCCCChHHHHHH
Q 037139 50 VINYDMPGNIEMYTHRIGRTG----RAGKTGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPELAKHE 112 (135)
Q Consensus 50 vi~~d~p~~~~~~~qr~GR~g----R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 112 (135)
|+..|+|.+...+.-..||.= -.|..|+..+-......+.++.+++.+-....-+=.++...+
T Consensus 224 vfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvVITdiirnF 290 (354)
T COG1568 224 VFITDPPETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVVITDIIRNF 290 (354)
T ss_pred eeecCchhhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCeeeHhhhhhh
Confidence 567789998888877778742 123346666666677788889999866665554444444333
No 249
>PF09010 AsiA: Anti-Sigma Factor A; InterPro: IPR015100 Anti-sigma factor A is a transcriptional inhibitor that inhibits sigma 70-directed transcription by weakening its interaction with the core of the host's RNA polymerase. It is an all-helical protein, composed of six helical segments and intervening loops and turns, as well as a helix-turn-helix DNA binding motif, although neither free anti-sigma factor nor anti-sigma factor bound to sigma-70 has been shown to interact directly with DNA. In solution, the protein forms a symmetric dimer of small (10.59 kDa) protomers, which are composed of helix and coil regions and are devoid of beta-strand/sheet secondary structural elements []. ; PDB: 1TKV_A 1JR5_B 1TLH_A 1TL6_A.
Probab=27.87 E-value=26 Score=21.33 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHHHhcCC
Q 037139 10 GGKSQEQREISLEGFRTKR 28 (135)
Q Consensus 10 g~~~~~~r~~~~~~f~~g~ 28 (135)
+.+++++|+++++.|..|-
T Consensus 60 ~~lt~~ek~elieeFn~G~ 78 (91)
T PF09010_consen 60 KRLTQEEKEELIEEFNEGH 78 (91)
T ss_dssp HTS-HHHHHHHHHHSHHHH
T ss_pred HHcCHHHHHHHHHHHhhhh
Confidence 5789999999999998764
No 250
>PRK13767 ATP-dependent helicase; Provisional
Probab=27.85 E-value=82 Score=27.29 Aligned_cols=47 Identities=23% Similarity=0.246 Sum_probs=32.2
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC-C----cc-c--ccccCCcEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-A----GR-G--IDIPDVAHVIN 52 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~-~----~~-G--~d~~~v~~vi~ 52 (135)
++++...||+.+..++.+.++ ...+|+|+|.- + .. . -.+.++++||.
T Consensus 124 ~i~v~v~~Gdt~~~~r~~~l~----~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 124 EIRVAIRTGDTSSYEKQKMLK----KPPHILITTPESLAILLNSPKFREKLRTVKWVIV 178 (876)
T ss_pred CeeEEEEcCCCCHHHHHHHHh----CCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEE
Confidence 467889999999988876554 35689999962 1 11 1 13567788774
No 251
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=27.33 E-value=1e+02 Score=23.97 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=28.9
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCC
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVA 38 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~ 38 (135)
+.+.+.||-++ ...+++.+.|.+|.++=+++|+..
T Consensus 295 V~~~~tH~vf~-~a~~~l~~~~~~g~i~~iv~TdTi 329 (382)
T PRK06827 295 IIVAATFGFFT-NGLEKFDKAYEEGYFDRIIGTNLV 329 (382)
T ss_pred EEEEEEeecCh-HHHHHHHhhcccCCCCEEEEeCCC
Confidence 45778899988 777777788888888989999876
No 252
>PRK07369 dihydroorotase; Provisional
Probab=27.14 E-value=81 Score=24.64 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEecCCCc
Q 037139 12 KSQEQREISLEGFRTKRYNVLVATDVAG 39 (135)
Q Consensus 12 ~~~~~r~~~~~~f~~g~~~ilv~T~~~~ 39 (135)
-++++|+..++.+++|.++ +|+||-+.
T Consensus 284 R~~~d~~aL~~~l~~G~Id-~i~SDHaP 310 (418)
T PRK07369 284 GNPSDRQALIEGVRTGVID-AIAIDHAP 310 (418)
T ss_pred CCHHHHHHHHHHHhcCCCC-EEEcCCCC
Confidence 3578899999999999999 77887653
No 253
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=26.99 E-value=1.4e+02 Score=22.04 Aligned_cols=32 Identities=13% Similarity=0.082 Sum_probs=26.3
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD 36 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~ 36 (135)
+-++.+|++-+.+ ++.+..|-.|.++++++|=
T Consensus 146 ~IIVd~HaeatsE--K~a~~~~ldg~vsaVvGtH 177 (266)
T TIGR00282 146 LIFVDFHAETTSE--KNAFGMAFDGYVTAVVGTH 177 (266)
T ss_pred EEEEEeCCCCHHH--HHHHHHHhCCCccEEEeCC
Confidence 4477899998765 6668889999999999985
No 254
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=26.92 E-value=91 Score=21.98 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=24.9
Q ss_pred EEecCCCCHHH--------HHHHHHHHhcCCC-cEEEecCCCccc
Q 037139 6 TTLHGGKSQEQ--------REISLEGFRTKRY-NVLVATDVAGRG 41 (135)
Q Consensus 6 ~~~hg~~~~~~--------r~~~~~~f~~g~~-~ilv~T~~~~~G 41 (135)
.++||.+||-+ -...+++...+.+ .|++||+.-.+|
T Consensus 105 hVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnpTvEG 149 (198)
T COG0353 105 HVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNPTVEG 149 (198)
T ss_pred EEecCccCcccCCCcccccHHHHHHHHhcCCCceEEEecCCCccc
Confidence 35566665544 3567778888888 899999865444
No 255
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=25.95 E-value=92 Score=19.38 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=24.6
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccc
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGI 42 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~ 42 (135)
|+.+...+.. ++-.+.++.+.+.++.|++.|+-+...+
T Consensus 22 Gi~~~~v~~~---ee~~~~i~~l~~~d~gII~Ite~~a~~i 59 (104)
T PRK01395 22 GIDVFPVIDE---QEAINTLRKLAMEDYGIIYITEQIAADI 59 (104)
T ss_pred CCeeEEecCh---HHHHHHHHHHhcCCcEEEEEcHHHHHHh
Confidence 5555555544 4556666677788899998887654443
No 256
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=25.87 E-value=1.1e+02 Score=23.18 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=25.8
Q ss_pred EEEecCCC-CHHHHHHHHHHHhcCCCcEEEecCC
Q 037139 5 VTTLHGGK-SQEQREISLEGFRTKRYNVLVATDV 37 (135)
Q Consensus 5 v~~~hg~~-~~~~r~~~~~~f~~g~~~ilv~T~~ 37 (135)
...+.|.| +..-|.-+....++|-++++|+|-.
T Consensus 58 fL~~tg~mvs~Glr~ii~~Li~~~~VD~iVtTga 91 (312)
T PRK01221 58 FLSFTANLVSTGLRGLIADLIKRGLFNVVITTCG 91 (312)
T ss_pred EEEecchhHHHHHHHHHHHHHHcCCeeEEEeCCC
Confidence 44567888 6666777777779999999999965
No 257
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=25.83 E-value=85 Score=27.42 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=26.3
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccc
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDI 44 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~ 44 (135)
+|++|.++.+++++.+|... -..+|+.+|.- ..|+|+
T Consensus 150 lGlsv~~i~~~~~~~~r~~~------Y~~dI~YgT~~-e~gfDy 186 (908)
T PRK13107 150 LGLTVGINVAGLGQQEKKAA------YNADITYGTNN-EFGFDY 186 (908)
T ss_pred cCCeEEEecCCCCHHHHHhc------CCCCeEEeCCC-cccchh
Confidence 58999999999998655443 24688888864 344444
No 258
>PF07835 COX4_pro_2: Bacterial aa3 type cytochrome c oxidase subunit IV; InterPro: IPR012422 Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown []. ; PDB: 1QLE_D 1M57_J 1M56_J.
Probab=25.15 E-value=78 Score=16.48 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=12.2
Q ss_pred CCCCHHHHHHHHHHHhc
Q 037139 10 GGKSQEQREISLEGFRT 26 (135)
Q Consensus 10 g~~~~~~r~~~~~~f~~ 26 (135)
|+|+-.++++..+.|-.
T Consensus 7 g~MD~~~he~Ty~gFi~ 23 (44)
T PF07835_consen 7 GEMDIAEHEKTYDGFIK 23 (44)
T ss_dssp T-S--HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 88999999999999853
No 259
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=25.13 E-value=1.2e+02 Score=22.28 Aligned_cols=47 Identities=13% Similarity=0.300 Sum_probs=27.5
Q ss_pred HHHHhcCCCcEEEecC-----CCcc-cccccCCcEEE------------EecCCCCHHHHHHHhh
Q 037139 21 LEGFRTKRYNVLVATD-----VAGR-GIDIPDVAHVI------------NYDMPGNIEMYTHRIG 67 (135)
Q Consensus 21 ~~~f~~g~~~ilv~T~-----~~~~-G~d~~~v~~vi------------~~d~p~~~~~~~qr~G 67 (135)
++.++.+.+.|.|+|. +++. .+.+..+.+|| .+|+|.+...+++..+
T Consensus 170 v~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~ivlD~s~~D~K~~~i~d~~e~~~~l~~lL~ 234 (252)
T PF14617_consen 170 VKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLKRIVLDWSYLDQKKRSIFDIPETREDLWKLLY 234 (252)
T ss_pred HHHHHhCCceEEEeChHHHHHHHHcCCCCcccCeEEEEcCCccccccccccccHHHHHHHHHHHh
Confidence 3344567888999997 2333 36666666665 3445555555544433
No 260
>TIGR03236 dnd_assoc_1 dnd system-associated protein 1. A DNA sulfur modification system, dnd (degradation during electrophoresis), is sparsely and sporadically distributed among the bacteria. Members of this protein family are strictly limited to species with the dnd operon, and are found close to the dnd operon on the chromosomes of Bacillus cereus E33L, Hahella chejuensis KCTC 2396, and Pseudoalteromonas haloplanktis TAC12.
Probab=24.54 E-value=35 Score=26.34 Aligned_cols=74 Identities=9% Similarity=0.127 Sum_probs=43.5
Q ss_pred HHHHHHhhhcCCC---CCCceEEEE----eecCChhHHHHHHHHHhhCCCCCChHHHHHHHhhCCCCCCCCCCCCCCCcc
Q 037139 60 EMYTHRIGRTGRA---GKTGVATTF----LTFHDTDVFYDLKQMLIQSNSPVPPELAKHEASKFKPGTIPDRPPRRNDTV 132 (135)
Q Consensus 60 ~~~~qr~GR~gR~---~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 132 (135)
..|+|+.||+|+. .++ ..+++ +...+.-.+..+-+-+++..--+..+-++...+-+.....=.+-...+|++
T Consensus 279 ~~Fik~RGrlG~vL~lnQd-~LLLLT~l~Vg~~~Kl~l~~L~~eFekRGvffD~~SkqeiI~fyEkin~lEKkSDSGDAq 357 (363)
T TIGR03236 279 NVFIQNRGRIGAVLNMNQD-YLLLLTNLAVGEREKLPLNRLIEEFSKRGVAFDRQSQQMLIEFYERHGNLERMSDSGDAV 357 (363)
T ss_pred HHHHHccCccceeeeccHH-HHHHHHHHHhCCcccchHHHHHHHHHhcCceeCchhHHHHHHHHHHhCcccccCCCCCce
Confidence 4468898998873 111 11111 113344455666666777776666666665555555555666666777888
Q ss_pred cc
Q 037139 133 FA 134 (135)
Q Consensus 133 ~~ 134 (135)
|+
T Consensus 358 YV 359 (363)
T TIGR03236 358 YV 359 (363)
T ss_pred ee
Confidence 75
No 261
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=23.96 E-value=1.6e+02 Score=18.81 Aligned_cols=34 Identities=3% Similarity=0.113 Sum_probs=26.3
Q ss_pred EEecCCCCHHHHHHHHHH-HhcCCCcEEEecCCCc
Q 037139 6 TTLHGGKSQEQREISLEG-FRTKRYNVLVATDVAG 39 (135)
Q Consensus 6 ~~~hg~~~~~~r~~~~~~-f~~g~~~ilv~T~~~~ 39 (135)
.+.++..+.++-++.++. ..+.++-|++-|+-++
T Consensus 37 ~~v~~~t~~eei~~~~~~~l~~~digIIlIte~~a 71 (115)
T TIGR01101 37 LVVDKNTTVSEIEDCFNRFLKRDDIAIILINQHIA 71 (115)
T ss_pred eeecCCCCHHHHHHHHHHHhhcCCeEEEEEcHHHH
Confidence 357777888888888888 6778899988887544
No 262
>PLN02599 dihydroorotase
Probab=23.93 E-value=1.2e+02 Score=23.46 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEecCCCcc
Q 037139 12 KSQEQREISLEGFRTKRYNVLVATDVAGR 40 (135)
Q Consensus 12 ~~~~~r~~~~~~f~~g~~~ilv~T~~~~~ 40 (135)
-++++|+..++.+.+|.+..+|+||-+.-
T Consensus 243 R~~~dr~aL~~al~~G~i~~~i~SDHaPh 271 (364)
T PLN02599 243 KREIHREALVKAATSGSKKFFLGTDSAPH 271 (364)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEecCCCCC
Confidence 46788999999999999988999997643
No 263
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=22.81 E-value=73 Score=27.81 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=27.8
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccc
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDI 44 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~ 44 (135)
+|++|+++.++|++.+|..++. .+|.-+|.. +-|+|.
T Consensus 146 LGLsvG~i~~~~~~~~rr~aY~------~DItYgTn~-E~gFDY 182 (925)
T PRK12903 146 LGLSVGINKANMDPNLKREAYA------CDITYSVHS-ELGFDY 182 (925)
T ss_pred hCCceeeeCCCCChHHHHHhcc------CCCeeecCc-ccchhh
Confidence 6899999999999999998765 466767653 444444
No 264
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=22.79 E-value=2.5e+02 Score=19.55 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=26.7
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD 36 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~ 36 (135)
+|+.+.++.+..+.+.....++.+.+..++.+|.+.
T Consensus 28 ~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~ 63 (268)
T cd06270 28 AGKHLIITAGHHSAEKEREAIEFLLERRCDALILHS 63 (268)
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEec
Confidence 367777666666677778888888888899776654
No 265
>PF10141 ssDNA-exonuc_C: Single-strand DNA-specific exonuclease, C terminal domain; InterPro: IPR018779 This entry represents a domain found at the C terminus of a set of single-stranded DNA-specific exonucleases, including RecJ. Its function has not, as yet, been determined.
Probab=22.79 E-value=2.7e+02 Score=19.26 Aligned_cols=56 Identities=13% Similarity=0.157 Sum_probs=36.0
Q ss_pred cccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEEeecC---------ChhHHHHHHHHHhhC
Q 037139 41 GIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFH---------DTDVFYDLKQMLIQS 100 (135)
Q Consensus 41 G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~~~~~---------~~~~~~~~~~~~~~~ 100 (135)
.-.....+.||.+|+|.+.+.+.+... .......++++... +.+.+..+-+++.+.
T Consensus 46 ~~~~~~~~~lVl~D~P~~~~~l~~~l~----~~~~~~Iyl~f~~~~~~y~~~~P~Re~F~~~Y~~l~~~ 110 (195)
T PF10141_consen 46 EDEDESYDNLVLLDLPPSLEQLKELLQ----QQQPERIYLLFYQQDSAYFEGMPTREQFKKLYKFLKQH 110 (195)
T ss_pred hhccccCCEEEEEeCCCCHHHHHHHHH----hCCcceEEEEECCccchhhcCCCCHHHHHHHHHHHHhC
Confidence 344567888999999999999888772 22344455444322 345566666666554
No 266
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=22.54 E-value=46 Score=24.56 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=11.7
Q ss_pred eEEEecCCCCHHHH
Q 037139 4 RVTTLHGGKSQEQR 17 (135)
Q Consensus 4 ~v~~~hg~~~~~~r 17 (135)
++.|+||||||.-.
T Consensus 155 kifCVHGGlSP~i~ 168 (303)
T KOG0372|consen 155 KIFCVHGGLSPSIQ 168 (303)
T ss_pred cEEEEcCCCCcchh
Confidence 68899999999753
No 267
>PRK13766 Hef nuclease; Provisional
Probab=22.54 E-value=1.8e+02 Score=24.58 Aligned_cols=48 Identities=27% Similarity=0.333 Sum_probs=32.9
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC------CcccccccCCcEEEEecCC
Q 037139 4 RVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV------AGRGIDIPDVAHVINYDMP 56 (135)
Q Consensus 4 ~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~------~~~G~d~~~v~~vi~~d~p 56 (135)
.+..++|+.++.+|.+.+. +.+|+|+|.- +..-+++..+++||.-..-
T Consensus 88 ~v~~~~g~~~~~~r~~~~~-----~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 88 KIVVFTGEVSPEKRAELWE-----KAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred eEEEEeCCCCHHHHHHHHh-----CCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 6788999999988776554 3579999962 2233566677887755433
No 268
>PRK01211 dihydroorotase; Provisional
Probab=22.44 E-value=1.1e+02 Score=23.85 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEecCCCc
Q 037139 12 KSQEQREISLEGFRTKRYNVLVATDVAG 39 (135)
Q Consensus 12 ~~~~~r~~~~~~f~~g~~~ilv~T~~~~ 39 (135)
-++++|+..++.+++|.+++ |+||-+.
T Consensus 252 Rs~~d~~aL~~~l~dG~ID~-i~SDHaP 278 (409)
T PRK01211 252 RDRWTQERLLEEYISGRFDI-LSSDHAP 278 (409)
T ss_pred CCHHHHHHHHHHHhCCCCCE-EeCCCCC
Confidence 35789999999999999996 7777553
No 269
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=22.32 E-value=1.2e+02 Score=22.14 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcC-CCcEEEecCCCcccccccC
Q 037139 14 QEQREISLEGFRTK-RYNVLVATDVAGRGIDIPD 46 (135)
Q Consensus 14 ~~~r~~~~~~f~~g-~~~ilv~T~~~~~G~d~~~ 46 (135)
+.|+.+-++.+..| ++.+.++.++-+-|+|.|.
T Consensus 200 ~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~E 233 (247)
T COG1212 200 KIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPE 233 (247)
T ss_pred HHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHH
Confidence 33444444444555 5888888888888998763
No 270
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=22.09 E-value=2e+02 Score=19.35 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=14.6
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCcEE
Q 037139 7 TLHGGKSQEQREISLEGFRTKRYNVL 32 (135)
Q Consensus 7 ~~hg~~~~~~r~~~~~~f~~g~~~il 32 (135)
.+||-+++.+..++++..+....+++
T Consensus 80 ~~~g~f~~~~~~~i~~~I~~~~pdiv 105 (172)
T PF03808_consen 80 YHHGYFDEEEEEAIINRINASGPDIV 105 (172)
T ss_pred ecCCCCChhhHHHHHHHHHHcCCCEE
Confidence 34444556666666666655555544
No 271
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=21.63 E-value=1.3e+02 Score=19.86 Aligned_cols=19 Identities=5% Similarity=-0.059 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCCcEEEecC
Q 037139 18 EISLEGFRTKRYNVLVATD 36 (135)
Q Consensus 18 ~~~~~~f~~g~~~ilv~T~ 36 (135)
..+.+.+++|+++.+|.|.
T Consensus 65 ~~i~~~I~~g~i~lVInt~ 83 (142)
T PRK05234 65 QQIGALIAEGKIDMLIFFR 83 (142)
T ss_pred hhHHHHHHcCceeEEEEec
Confidence 6688888888888887774
No 272
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=21.59 E-value=1.2e+02 Score=27.08 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=26.7
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCCcEEEecC
Q 037139 5 VTTLHGGKSQEQREISLEGFRTKRYNVLVATD 36 (135)
Q Consensus 5 v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~ 36 (135)
+..+-+.-++++|.....+.+.|+.+||++|-
T Consensus 470 v~~i~YkGtp~~R~~l~~qir~gKFnVLlTty 501 (1157)
T KOG0386|consen 470 VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTY 501 (1157)
T ss_pred eeeeeeeCCHHHHhhHHHHHhcccceeeeeeH
Confidence 44455556799999999999999999999994
No 273
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=21.16 E-value=1.1e+02 Score=18.97 Aligned_cols=19 Identities=5% Similarity=0.027 Sum_probs=14.4
Q ss_pred HHHHHHHhcCCCcEEEecC
Q 037139 18 EISLEGFRTKRYNVLVATD 36 (135)
Q Consensus 18 ~~~~~~f~~g~~~ilv~T~ 36 (135)
..+.+.+++|+++++|.|.
T Consensus 61 ~~i~~~i~~~~idlVIn~~ 79 (116)
T cd01423 61 PSLRELLAEGKIDLVINLP 79 (116)
T ss_pred hhHHHHHHcCCceEEEECC
Confidence 5677777888888887764
No 274
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=20.97 E-value=1.8e+02 Score=21.91 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=23.6
Q ss_pred EEEecCCCCHHH-HHHHHHHHhcCCCcEEEecCC
Q 037139 5 VTTLHGGKSQEQ-REISLEGFRTKRYNVLVATDV 37 (135)
Q Consensus 5 v~~~hg~~~~~~-r~~~~~~f~~g~~~ilv~T~~ 37 (135)
...+.|.|.+.. |.-+....++|.++++|+|..
T Consensus 49 fLt~tg~mvsaGlr~ii~~Li~~g~Vd~ivtTga 82 (301)
T TIGR00321 49 FMGYAGNLVPSGMREIIAYLIQHGMIDALVTTGA 82 (301)
T ss_pred EEEeccccchhhHHHHHHHHHHcCCeeEEEeCCC
Confidence 345667777666 445555558999999999965
No 275
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=20.77 E-value=2.6e+02 Score=19.35 Aligned_cols=35 Identities=29% Similarity=0.326 Sum_probs=26.4
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEec
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT 35 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T 35 (135)
+|+.+.......++....+.++.+....++-+|.+
T Consensus 28 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~ 62 (268)
T cd01575 28 AGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILT 62 (268)
T ss_pred cCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEe
Confidence 46777777777777777888888888888866543
No 276
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=20.72 E-value=1.8e+02 Score=21.22 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=30.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccC
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPD 46 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~ 46 (135)
|+.+.+ |.|+..+-.++.+... .-++++.+|+...-.|+-.
T Consensus 181 GlTvqP--gKlt~~eAveIV~ey~--~~r~ilnSD~~s~~sd~la 221 (254)
T COG1099 181 GLTVQP--GKLTVEEAVEIVREYG--AERIILNSDAGSAASDPLA 221 (254)
T ss_pred EEEecC--CcCCHHHHHHHHHHhC--cceEEEecccccccccchh
Confidence 555555 8999999999999885 5678898888655555433
No 277
>PRK01189 V-type ATP synthase subunit F; Provisional
Probab=20.64 E-value=1.3e+02 Score=18.68 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCCCcEEEecCCCcccc
Q 037139 14 QEQREISLEGFRTKRYNVLVATDVAGRGI 42 (135)
Q Consensus 14 ~~~r~~~~~~f~~g~~~ilv~T~~~~~G~ 42 (135)
+++-+++++.+.+.++-|++.|..+..-+
T Consensus 31 ~e~~~~~~~~l~~~~~gII~iTE~~a~~i 59 (104)
T PRK01189 31 KDLVKKFLEIFNNPKCKYIFVSESTKNMF 59 (104)
T ss_pred HHHHHHHHHHHhcCCeEEEEEEHHHHhhC
Confidence 46668888899999999999998765554
No 278
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=20.47 E-value=2.9e+02 Score=18.80 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=29.4
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCc
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAG 39 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~ 39 (135)
+|+.+..+..+.++.+....++.+.+...+.+|......
T Consensus 28 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~ 66 (264)
T cd06267 28 AGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRL 66 (264)
T ss_pred cCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCc
Confidence 367777777888888888888889888888777655433
No 279
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=20.30 E-value=3.6e+02 Score=19.75 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=26.3
Q ss_pred EEEecCCCCHHHHHHHhhhcC--CCCCCceEEEEeecCC--hhHHHHHHHHHhh
Q 037139 50 VINYDMPGNIEMYTHRIGRTG--RAGKTGVATTFLTFHD--TDVFYDLKQMLIQ 99 (135)
Q Consensus 50 vi~~d~p~~~~~~~qr~GR~g--R~~~~g~~~~~~~~~~--~~~~~~~~~~~~~ 99 (135)
++..|+|.+++-..=-++|+- =.+..+.++.-+...+ ...+..+++.+..
T Consensus 115 ~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~ 168 (243)
T PF01861_consen 115 VFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLE 168 (243)
T ss_dssp EEEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHT
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHH
Confidence 678999999776655555542 1222335566666655 4556677776653
Done!