Query 037139
Match_columns 135
No_of_seqs 178 out of 1276
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 15:12:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jgn_A DBX, DDX3, ATP-dependen 100.0 4.7E-28 1.6E-32 166.2 11.4 112 2-113 70-181 (185)
2 2p6n_A ATP-dependent RNA helic 100.0 1.4E-27 4.8E-32 164.7 12.0 110 2-111 78-188 (191)
3 2hjv_A ATP-dependent RNA helic 99.9 3.5E-27 1.2E-31 158.6 11.9 103 1-103 58-160 (163)
4 1t5i_A C_terminal domain of A 99.9 2.9E-27 1E-31 160.5 9.9 109 2-110 55-164 (172)
5 1fuk_A Eukaryotic initiation f 99.9 1.9E-27 6.4E-32 160.2 7.6 108 2-109 54-161 (165)
6 3eaq_A Heat resistant RNA depe 99.9 1.4E-26 4.7E-31 161.9 12.1 102 2-103 55-156 (212)
7 2rb4_A ATP-dependent RNA helic 99.9 1E-26 3.5E-31 157.9 10.9 104 2-105 58-167 (175)
8 2db3_A ATP-dependent RNA helic 99.9 1.9E-26 6.5E-31 175.9 13.4 109 2-110 324-433 (434)
9 3i32_A Heat resistant RNA depe 99.9 2E-25 6.7E-30 163.5 11.2 102 1-102 51-152 (300)
10 2i4i_A ATP-dependent RNA helic 99.9 2.8E-25 9.7E-30 167.1 11.8 113 2-114 300-412 (417)
11 2yjt_D ATP-dependent RNA helic 99.9 2E-26 7E-31 155.8 0.0 100 2-101 54-153 (170)
12 1s2m_A Putative ATP-dependent 99.9 2.6E-24 8.9E-29 161.3 10.8 109 2-110 282-390 (400)
13 2j0s_A ATP-dependent RNA helic 99.9 1.9E-24 6.5E-29 162.6 9.6 107 2-108 300-406 (410)
14 3eiq_A Eukaryotic initiation f 99.9 9.3E-25 3.2E-29 164.0 6.6 109 2-110 304-412 (414)
15 1hv8_A Putative ATP-dependent 99.9 3E-23 1E-27 153.2 12.3 104 2-105 262-365 (367)
16 3i5x_A ATP-dependent RNA helic 99.9 2.5E-23 8.7E-28 162.5 12.0 99 2-100 366-464 (563)
17 1xti_A Probable ATP-dependent 99.9 1.9E-23 6.5E-28 155.9 10.0 108 2-109 274-382 (391)
18 3sqw_A ATP-dependent RNA helic 99.9 6.3E-23 2.1E-27 161.2 12.0 99 2-100 315-413 (579)
19 3fht_A ATP-dependent RNA helic 99.9 4E-23 1.4E-27 154.9 10.1 106 2-107 290-402 (412)
20 1oyw_A RECQ helicase, ATP-depe 99.9 1.4E-22 4.9E-27 157.9 11.2 89 2-90 260-348 (523)
21 2v1x_A ATP-dependent DNA helic 99.9 1.5E-22 5.1E-27 159.8 10.3 90 1-90 290-379 (591)
22 3pey_A ATP-dependent RNA helic 99.9 1E-22 3.4E-27 151.7 8.5 104 2-105 267-378 (395)
23 2z0m_A 337AA long hypothetical 99.9 1.8E-22 6.2E-27 147.6 8.8 94 4-98 242-335 (337)
24 1fuu_A Yeast initiation factor 99.9 6.2E-24 2.1E-28 158.5 0.0 108 2-109 283-390 (394)
25 3fmp_B ATP-dependent RNA helic 99.9 1.7E-23 5.8E-28 160.8 0.0 105 2-106 357-468 (479)
26 3fho_A ATP-dependent RNA helic 99.8 4.2E-22 1.4E-26 154.6 2.5 107 2-108 381-494 (508)
27 4a2p_A RIG-I, retinoic acid in 99.8 3.6E-21 1.2E-25 149.2 5.6 84 2-87 426-510 (556)
28 3tbk_A RIG-I helicase domain; 99.8 3.3E-21 1.1E-25 149.1 3.4 89 3-93 426-515 (555)
29 4gl2_A Interferon-induced heli 99.8 9E-20 3.1E-24 145.5 11.0 82 2-85 430-519 (699)
30 2d7d_A Uvrabc system protein B 99.8 1.5E-19 5E-24 144.3 12.2 92 2-94 469-565 (661)
31 1wp9_A ATP-dependent RNA helic 99.8 4.6E-20 1.6E-24 139.7 8.1 86 2-88 385-478 (494)
32 1c4o_A DNA nucleotide excision 99.8 2.2E-19 7.4E-24 143.4 11.9 93 2-95 463-560 (664)
33 1yks_A Genome polyprotein [con 99.8 4.9E-20 1.7E-24 140.9 7.4 101 2-107 201-324 (440)
34 3oiy_A Reverse gyrase helicase 99.8 3E-19 1E-23 134.8 10.5 89 2-98 276-376 (414)
35 2zj8_A DNA helicase, putative 99.8 2.7E-19 9.2E-24 143.7 10.4 99 4-104 296-404 (720)
36 2va8_A SSO2462, SKI2-type heli 99.8 2.6E-19 8.9E-24 143.6 9.6 84 3-86 313-409 (715)
37 3dmq_A RNA polymerase-associat 99.8 2.9E-19 1E-23 147.5 10.0 97 2-98 528-626 (968)
38 4a2q_A RIG-I, retinoic acid in 99.8 6.8E-20 2.3E-24 148.6 6.1 84 2-87 667-751 (797)
39 1gm5_A RECG; helicase, replica 99.8 3.8E-20 1.3E-24 149.7 4.3 93 2-94 613-706 (780)
40 2ykg_A Probable ATP-dependent 99.8 9.3E-21 3.2E-25 151.1 0.7 89 3-93 427-524 (696)
41 2xgj_A ATP-dependent RNA helic 99.8 7.3E-19 2.5E-23 145.6 10.5 98 4-103 408-515 (1010)
42 2p6r_A Afuhel308 helicase; pro 99.8 2.6E-19 8.9E-24 143.4 7.5 84 3-86 297-389 (702)
43 2whx_A Serine protease/ntpase/ 99.8 8.7E-19 3E-23 138.9 9.4 101 2-107 379-503 (618)
44 3rc3_A ATP-dependent RNA helic 99.8 1.9E-18 6.6E-23 138.0 11.4 100 2-106 344-462 (677)
45 3l9o_A ATP-dependent RNA helic 99.8 9.3E-19 3.2E-23 146.0 9.3 102 5-108 507-618 (1108)
46 1z5z_A Helicase of the SNF2/RA 99.8 6.8E-19 2.3E-23 127.1 7.5 84 2-85 137-224 (271)
47 4a2w_A RIG-I, retinoic acid in 99.8 2.7E-19 9.1E-24 147.4 5.4 84 2-87 667-751 (936)
48 2wv9_A Flavivirin protease NS2 99.8 1.3E-18 4.4E-23 139.1 7.5 99 2-105 434-556 (673)
49 2eyq_A TRCF, transcription-rep 99.7 6.2E-18 2.1E-22 141.6 10.5 84 2-85 838-922 (1151)
50 2oca_A DAR protein, ATP-depend 99.7 1.2E-18 4.2E-23 134.6 5.5 80 2-81 371-451 (510)
51 2fwr_A DNA repair protein RAD2 99.7 2.7E-18 9.2E-23 131.6 6.1 81 5-85 371-454 (472)
52 2jlq_A Serine protease subunit 99.7 9.9E-18 3.4E-22 128.5 8.7 78 2-84 212-310 (451)
53 2xau_A PRE-mRNA-splicing facto 99.7 8.2E-19 2.8E-23 142.1 2.4 83 2-85 338-443 (773)
54 1tf5_A Preprotein translocase 99.7 6.1E-18 2.1E-22 136.6 7.3 85 1-87 455-547 (844)
55 2z83_A Helicase/nucleoside tri 99.7 2E-18 6.9E-23 132.6 4.0 79 2-85 214-313 (459)
56 4f92_B U5 small nuclear ribonu 99.7 1.1E-17 3.9E-22 143.9 7.4 89 3-91 1214-1314(1724)
57 4f92_B U5 small nuclear ribonu 99.7 1.4E-17 4.8E-22 143.4 7.5 92 2-93 378-481 (1724)
58 1gku_B Reverse gyrase, TOP-RG; 99.7 4.3E-17 1.5E-21 135.6 9.5 92 3-99 299-468 (1054)
59 4a4z_A Antiviral helicase SKI2 99.7 4.1E-17 1.4E-21 135.1 9.2 100 4-105 401-511 (997)
60 1z63_A Helicase of the SNF2/RA 99.7 4.5E-17 1.5E-21 125.6 8.7 99 2-102 366-468 (500)
61 2v6i_A RNA helicase; membrane, 99.7 8.7E-17 3E-21 122.6 9.1 76 2-82 195-288 (431)
62 3jux_A Protein translocase sub 99.7 9.5E-17 3.2E-21 128.1 9.5 85 1-87 497-589 (822)
63 4ddu_A Reverse gyrase; topoiso 99.7 1.5E-16 5.1E-21 132.8 8.4 91 2-98 333-503 (1104)
64 2fsf_A Preprotein translocase 99.7 1.8E-16 6.1E-21 128.0 7.7 85 1-87 464-585 (853)
65 3o8b_A HCV NS3 protease/helica 99.6 6.4E-17 2.2E-21 128.7 4.2 79 1-89 419-518 (666)
66 1z3i_X Similar to RAD54-like; 99.6 1.4E-15 4.8E-20 121.1 11.9 84 2-85 440-528 (644)
67 1nkt_A Preprotein translocase 99.6 1.2E-15 4.1E-20 123.7 10.2 85 1-87 483-619 (922)
68 3h1t_A Type I site-specific re 99.6 2.5E-15 8.4E-20 118.2 8.5 69 5-74 474-545 (590)
69 3mwy_W Chromo domain-containin 99.6 6E-15 2E-19 119.9 9.1 84 2-85 596-684 (800)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.2 5.2E-11 1.8E-15 99.1 8.3 67 16-83 637-707 (1038)
71 2vl7_A XPD; helicase, unknown 97.8 4.5E-05 1.5E-09 59.6 6.8 48 7-57 410-463 (540)
72 2ipc_A Preprotein translocase 97.4 0.00041 1.4E-08 57.3 7.5 39 49-87 662-700 (997)
73 4a15_A XPD helicase, ATP-depen 96.8 0.0065 2.2E-07 48.3 8.5 47 10-57 477-527 (620)
74 1gm5_A RECG; helicase, replica 95.1 0.03 1E-06 45.7 5.4 53 2-54 445-498 (780)
75 3crv_A XPD/RAD3 related DNA he 94.6 0.32 1.1E-05 37.8 9.7 41 17-57 426-473 (551)
76 3hgt_A HDA1 complex subunit 3; 94.4 0.22 7.5E-06 36.6 7.9 81 2-87 149-239 (328)
77 3oiy_A Reverse gyrase helicase 90.1 0.4 1.4E-05 35.5 4.7 53 2-54 91-147 (414)
78 2eyq_A TRCF, transcription-rep 90.0 0.38 1.3E-05 40.9 4.9 51 2-52 680-731 (1151)
79 4ddu_A Reverse gyrase; topoiso 84.1 1 3.5E-05 38.2 4.2 53 2-54 148-204 (1104)
80 1oyw_A RECQ helicase, ATP-depe 78.0 3.5 0.00012 31.8 5.1 36 1-36 88-123 (523)
81 2v1x_A ATP-dependent DNA helic 71.4 5.9 0.0002 31.2 4.9 35 2-36 108-144 (591)
82 1qle_D Cytochrome AA3, ccytoch 62.8 4.3 0.00015 20.5 1.7 20 7-26 3-22 (43)
83 3pnu_A Dihydroorotase; TIM bar 52.1 13 0.00045 27.3 3.4 28 13-40 238-265 (359)
84 1t6n_A Probable ATP-dependent 51.1 28 0.00097 22.8 4.8 50 2-54 111-166 (220)
85 3fe2_A Probable ATP-dependent 49.1 31 0.0011 23.1 4.8 47 2-52 130-182 (242)
86 1gku_B Reverse gyrase, TOP-RG; 46.4 14 0.00048 31.2 3.1 47 4-52 133-181 (1054)
87 3ber_A Probable ATP-dependent 45.5 37 0.0012 23.0 4.8 48 2-53 139-193 (249)
88 2z26_A Dihydroorotase, dhoase; 44.2 21 0.00071 25.8 3.4 25 14-38 228-252 (347)
89 2fsf_A Preprotein translocase 43.8 26 0.0009 29.0 4.2 30 1-36 142-171 (853)
90 1nkt_A Preprotein translocase 43.6 27 0.00091 29.3 4.2 30 1-36 179-208 (922)
91 2ipc_A Preprotein translocase 42.4 23 0.00079 29.8 3.7 30 1-36 147-176 (997)
92 1tf5_A Preprotein translocase 42.3 28 0.00096 28.8 4.2 30 1-36 151-180 (844)
93 2oxc_A Probable ATP-dependent 39.1 37 0.0013 22.5 3.9 46 2-52 121-172 (230)
94 3ly5_A ATP-dependent RNA helic 37.2 63 0.0022 22.0 5.0 47 2-52 154-207 (262)
95 2pl3_A Probable ATP-dependent 36.6 37 0.0013 22.5 3.6 46 2-52 125-177 (236)
96 3iuy_A Probable ATP-dependent 36.4 25 0.00087 23.2 2.7 47 2-52 121-173 (228)
97 3bor_A Human initiation factor 35.7 29 0.001 23.2 3.0 48 2-52 126-179 (237)
98 1xti_A Probable ATP-dependent 32.4 73 0.0025 22.6 4.8 48 2-52 105-158 (391)
99 1jr5_A 10 kDa anti-sigma facto 32.0 9.1 0.00031 22.4 -0.1 20 10-29 59-78 (90)
100 2jnb_A NHP2-like protein 1; sp 30.6 18 0.00061 23.1 1.1 72 18-97 56-136 (144)
101 1vec_A ATP-dependent RNA helic 30.2 68 0.0023 20.5 4.0 47 2-52 100-152 (206)
102 2xw6_A MGS, methylglyoxal synt 30.1 37 0.0013 21.3 2.5 35 2-37 49-83 (134)
103 1cmk_I CAMP-dependent protein 30.0 13 0.00046 16.4 0.3 8 66-73 9-16 (26)
104 1b93_A Protein (methylglyoxal 29.5 50 0.0017 21.2 3.1 35 2-37 57-91 (152)
105 2l82_A Designed protein OR32; 27.0 1.1E+02 0.0038 18.6 4.7 32 1-32 102-133 (162)
106 1wrb_A DJVLGB; RNA helicase, D 26.7 78 0.0027 21.1 3.9 48 2-53 128-181 (253)
107 3zzp_A TS9, ribosomal protein 25.2 89 0.003 17.5 3.3 22 5-26 49-70 (77)
108 1vmd_A MGS, methylglyoxal synt 23.2 65 0.0022 21.3 2.8 35 2-37 73-107 (178)
109 2aif_A Ribosomal protein L7A; 21.8 1.5E+02 0.0052 18.3 7.5 72 18-97 47-127 (135)
110 2hqb_A Transcriptional activat 20.8 2E+02 0.007 19.7 5.3 36 1-36 36-71 (296)
111 1pyo_A Caspase-2; apoptosis, c 20.7 1.5E+02 0.0052 19.1 4.2 25 1-26 70-94 (167)
No 1
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=4.7e-28 Score=166.22 Aligned_cols=112 Identities=46% Similarity=0.792 Sum_probs=93.6
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++.+|..++++|++|+++|||||+++++|+|+|++++||++|+|++...|+||+||+||.|+.|.++++
T Consensus 70 g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 149 (185)
T 2jgn_A 70 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 149 (185)
T ss_dssp TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEE
T ss_pred CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEE
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCCCCCChHHHHHHH
Q 037139 82 LTFHDTDVFYDLKQMLIQSNSPVPPELAKHEA 113 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 113 (135)
+.+.+...++.+.+.+.....++|+++..+..
T Consensus 150 ~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~a~ 181 (185)
T 2jgn_A 150 FNERNINITKDLLDLLVEAKQEVPSWLENMAY 181 (185)
T ss_dssp ECGGGGGGHHHHHHHHHHTTCCCCHHHHHHHC
T ss_pred EchhhHHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 99999999999999999999999999887643
No 2
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.4e-27 Score=164.68 Aligned_cols=110 Identities=52% Similarity=0.886 Sum_probs=101.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++++|.++++.|++|+++|||||+++++|+|+|++++||+||+|++...|+||+||+||.|+.|.++++
T Consensus 78 g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l 157 (191)
T 2p6n_A 78 GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTF 157 (191)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEE
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecC-ChhHHHHHHHHHhhCCCCCChHHHHH
Q 037139 82 LTFH-DTDVFYDLKQMLIQSNSPVPPELAKH 111 (135)
Q Consensus 82 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ 111 (135)
+.+. +......+++.+.....++|++|.++
T Consensus 158 ~~~~~~~~~~~~l~~~l~~~~~~~p~~l~~~ 188 (191)
T 2p6n_A 158 INKACDESVLMDLKALLLEAKQKVPPVLQVL 188 (191)
T ss_dssp ECTTSCHHHHHHHHHHHHHTTCCCCHHHHST
T ss_pred EcCchhHHHHHHHHHHHHHccCcCCHHHHhh
Confidence 9876 67788999999999999999998754
No 3
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=3.5e-27 Score=158.63 Aligned_cols=103 Identities=44% Similarity=0.698 Sum_probs=96.8
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
.|+.+..+||+|++.+|..++++|++|+++|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+.|.+++
T Consensus 58 ~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~ 137 (163)
T 2hjv_A 58 LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAIS 137 (163)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEE
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEE
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCChhHHHHHHHHHhhCCCC
Q 037139 81 FLTFHDTDVFYDLKQMLIQSNSP 103 (135)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ 103 (135)
++.+.+...++.+++.+.....+
T Consensus 138 ~~~~~~~~~~~~i~~~~~~~~~~ 160 (163)
T 2hjv_A 138 FVTAFEKRFLADIEEYIGFEIQK 160 (163)
T ss_dssp EECGGGHHHHHHHHHHHTSCCEE
T ss_pred EecHHHHHHHHHHHHHHCCCcCc
Confidence 99999999999998888765543
No 4
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=2.9e-27 Score=160.47 Aligned_cols=109 Identities=34% Similarity=0.607 Sum_probs=98.2
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++.+|..++++|++|+++|||||+++++|+|+|++++||+||+|++...|+||+||+||.|+.|.++++
T Consensus 55 ~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~ 134 (172)
T 1t5i_A 55 NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 134 (172)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecC-ChhHHHHHHHHHhhCCCCCChHHHH
Q 037139 82 LTFH-DTDVFYDLKQMLIQSNSPVPPELAK 110 (135)
Q Consensus 82 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 110 (135)
+.+. +...++.+++.+.....++|..+..
T Consensus 135 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (172)
T 1t5i_A 135 VSDENDAKILNDVQDRFEVNISELPDEIDI 164 (172)
T ss_dssp ECSHHHHHHHHHHHHHHCCCEEECC-----
T ss_pred EcChhHHHHHHHHHHHHhcchhhCChhhch
Confidence 9875 4567888999998888888887654
No 5
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.94 E-value=1.9e-27 Score=160.21 Aligned_cols=108 Identities=36% Similarity=0.670 Sum_probs=97.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||++|+|++...|.||+||+||.|+.|.++++
T Consensus 54 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~ 133 (165)
T 1fuk_A 54 KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINF 133 (165)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCCCCCChHHH
Q 037139 82 LTFHDTDVFYDLKQMLIQSNSPVPPELA 109 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 109 (135)
+.+.+...+..+++.++....++|..+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (165)
T 1fuk_A 134 VTNEDVGAMRELEKFYSTQIEELPSDIA 161 (165)
T ss_dssp EETTTHHHHHHHHHHSSCCCEECCSCCT
T ss_pred EcchHHHHHHHHHHHHccCccccCccHH
Confidence 9999999999999988888877776544
No 6
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=1.4e-26 Score=161.94 Aligned_cols=102 Identities=40% Similarity=0.593 Sum_probs=94.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++++|..+++.|++|+++|||||+++++|+|+|++++||++|+|++...|+||+||+||.|+.|.++++
T Consensus 55 ~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l 134 (212)
T 3eaq_A 55 GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLL 134 (212)
T ss_dssp TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCCCC
Q 037139 82 LTFHDTDVFYDLKQMLIQSNSP 103 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ 103 (135)
+...+...++.+++.++.....
T Consensus 135 ~~~~~~~~~~~i~~~~~~~~~~ 156 (212)
T 3eaq_A 135 YGPRERRDVEALERAVGRRFKR 156 (212)
T ss_dssp ECGGGHHHHHHHHHHHSSCCEE
T ss_pred EchhHHHHHHHHHHHhcCcCee
Confidence 9999998999998887765433
No 7
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=1e-26 Score=157.93 Aligned_cols=104 Identities=36% Similarity=0.614 Sum_probs=93.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCC------CCHHHHHHHhhhcCCCCCC
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMP------GNIEMYTHRIGRTGRAGKT 75 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p------~~~~~~~qr~GR~gR~~~~ 75 (135)
|+.+..+||+|++.+|..++++|++|+++|||||+++++|+|+|.+++||+||+| .+...|+||+||+||.|+.
T Consensus 58 ~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~ 137 (175)
T 2rb4_A 58 GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK 137 (175)
T ss_dssp TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC
Confidence 6789999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred ceEEEEeecCChhHHHHHHHHHhhCCCCCC
Q 037139 76 GVATTFLTFHDTDVFYDLKQMLIQSNSPVP 105 (135)
Q Consensus 76 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (135)
|.+++++...+...+..+++.++....+++
T Consensus 138 g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 167 (175)
T 2rb4_A 138 GLAFNMIEVDELPSLMKIQDHFNSSIKQLN 167 (175)
T ss_dssp EEEEEEECGGGHHHHHHHHHHHTCCCEEEC
T ss_pred ceEEEEEccchHHHHHHHHHHhcCcccccC
Confidence 999999999988888888888876655443
No 8
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.94 E-value=1.9e-26 Score=175.87 Aligned_cols=109 Identities=46% Similarity=0.751 Sum_probs=103.5
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++++|++++++|++|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.+++|
T Consensus 324 ~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~ 403 (434)
T 2db3_A 324 EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSF 403 (434)
T ss_dssp TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eec-CChhHHHHHHHHHhhCCCCCChHHHH
Q 037139 82 LTF-HDTDVFYDLKQMLIQSNSPVPPELAK 110 (135)
Q Consensus 82 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~ 110 (135)
+.+ .+......+.+.+....+++|++|.+
T Consensus 404 ~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 404 FDPEKDRAIAADLVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp ECTTTCGGGHHHHHHHHHHTTCCCCGGGC-
T ss_pred EeccccHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 995 56778899999999999999999864
No 9
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=2e-25 Score=163.48 Aligned_cols=102 Identities=41% Similarity=0.612 Sum_probs=91.5
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
.|+.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|++...|+||+||+||.|+.|.+++
T Consensus 51 ~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~ 130 (300)
T 3i32_A 51 LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVL 130 (300)
T ss_dssp TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEE
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCChhHHHHHHHHHhhCCC
Q 037139 81 FLTFHDTDVFYDLKQMLIQSNS 102 (135)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~ 102 (135)
++...+...++.+++.++....
T Consensus 131 l~~~~e~~~~~~ie~~~~~~~~ 152 (300)
T 3i32_A 131 LYGPRERRDVEALERAVGRRFK 152 (300)
T ss_dssp EECSSTHHHHHHHHHHHTCCCE
T ss_pred EeChHHHHHHHHHHHHhCCcce
Confidence 9999999999988888776543
No 10
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.93 E-value=2.8e-25 Score=167.15 Aligned_cols=113 Identities=45% Similarity=0.786 Sum_probs=106.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++++|.++++.|++|+.+|||||+++++|+|+|++++||++|+|.+...|+||+||+||.|+.|.++++
T Consensus 300 ~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 379 (417)
T 2i4i_A 300 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 379 (417)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEE
T ss_pred CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCCCCCChHHHHHHHh
Q 037139 82 LTFHDTDVFYDLKQMLIQSNSPVPPELAKHEAS 114 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 114 (135)
+.+.+......+.+.+.....++|.++.....+
T Consensus 380 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 412 (417)
T 2i4i_A 380 FNERNINITKDLLDLLVEAKQEVPSWLENMAYE 412 (417)
T ss_dssp ECGGGGGGHHHHHHHHHHTTCCCCHHHHHHHTC
T ss_pred EccccHHHHHHHHHHHHHhcCcCCHHHHHHHHh
Confidence 999999999999999999999999999876544
No 11
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.85 E-value=2e-26 Score=155.85 Aligned_cols=100 Identities=43% Similarity=0.667 Sum_probs=93.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++.+|.++++.|++|+++|||||+++++|+|+|++++||++|+|++...|+||+||+||.|+.|.++++
T Consensus 54 ~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~ 133 (170)
T 2yjt_D 54 GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISL 133 (170)
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCC
Q 037139 82 LTFHDTDVFYDLKQMLIQSN 101 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~ 101 (135)
+...+...+..+++.+....
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~ 153 (170)
T 2yjt_D 134 VEAHDHLLLGKVGRYIEEPI 153 (170)
Confidence 99888888888877765554
No 12
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.91 E-value=2.6e-24 Score=161.26 Aligned_cols=109 Identities=36% Similarity=0.620 Sum_probs=103.5
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++++|..+++.|++|+.+|||||+++++|+|+|++++||++|+|++...|+||+||+||.|+.|.++++
T Consensus 282 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l 361 (400)
T 1s2m_A 282 GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINL 361 (400)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEE
T ss_pred CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCCCCCChHHHH
Q 037139 82 LTFHDTDVFYDLKQMLIQSNSPVPPELAK 110 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 110 (135)
+...+...++.+++.+.....++|.++..
T Consensus 362 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 390 (400)
T 1s2m_A 362 INWNDRFNLYKIEQELGTEIAAIPATIDK 390 (400)
T ss_dssp ECGGGHHHHHHHHHHHTCCCEECCSSCCG
T ss_pred eccchHHHHHHHHHHhCCCcccccccccc
Confidence 99999999999999999888888877653
No 13
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.91 E-value=1.9e-24 Score=162.57 Aligned_cols=107 Identities=39% Similarity=0.744 Sum_probs=101.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++++|.++++.|++|+.+|||||+++++|+|+|++++||++|+|++...|+||+||+||.|+.|.++++
T Consensus 300 ~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 379 (410)
T 2j0s_A 300 NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINF 379 (410)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCCCCCChHH
Q 037139 82 LTFHDTDVFYDLKQMLIQSNSPVPPEL 108 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l 108 (135)
+...+...++.++++++....++|..+
T Consensus 380 ~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (410)
T 2j0s_A 380 VKNDDIRILRDIEQYYSTQIDEMPMNV 406 (410)
T ss_dssp EEGGGHHHHHHHHHHTTCCCEECCSCC
T ss_pred ecHHHHHHHHHHHHHhCCCceecccch
Confidence 999999999999999998888777543
No 14
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.91 E-value=9.3e-25 Score=164.05 Aligned_cols=109 Identities=39% Similarity=0.681 Sum_probs=87.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++++|.++++.|++|+.+|||||+++++|+|+|++++||++|+|.+...|+||+||+||.|+.|.++++
T Consensus 304 ~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 383 (414)
T 3eiq_A 304 DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINM 383 (414)
T ss_dssp TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEE
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCCCCCChHHHH
Q 037139 82 LTFHDTDVFYDLKQMLIQSNSPVPPELAK 110 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 110 (135)
+...+...++.++++++....++|..+.+
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (414)
T 3eiq_A 384 VTEEDKRTLRDIETFYNTSIEEMPLNVAD 412 (414)
T ss_dssp ECSTHHHHHHHHHHHTTCCCEECCC----
T ss_pred EcHHHHHHHHHHHHHHcCCccccChhhhh
Confidence 99999999999999999999888877654
No 15
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.90 E-value=3e-23 Score=153.17 Aligned_cols=104 Identities=39% Similarity=0.656 Sum_probs=98.7
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++++|.++++.|++|+.+|||||+++++|+|+|++++||++|+|++...|.||+||+||.|+.|.++++
T Consensus 262 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 341 (367)
T 1hv8_A 262 GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISI 341 (367)
T ss_dssp TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEE
T ss_pred CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCCCCCC
Q 037139 82 LTFHDTDVFYDLKQMLIQSNSPVP 105 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ 105 (135)
+.+.+...++.+++.++....+++
T Consensus 342 ~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 342 INRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp ECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred EcHHHHHHHHHHHHHhCCCCceec
Confidence 999999999999998888776553
No 16
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.90 E-value=2.5e-23 Score=162.50 Aligned_cols=99 Identities=30% Similarity=0.560 Sum_probs=93.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||++|+|.+...|+||+||+||.|+.|.++++
T Consensus 366 ~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~ 445 (563)
T 3i5x_A 366 DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLF 445 (563)
T ss_dssp TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEE
T ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhC
Q 037139 82 LTFHDTDVFYDLKQMLIQS 100 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~ 100 (135)
+.+.+...++.+++.....
T Consensus 446 ~~~~e~~~~~~l~~~~~~~ 464 (563)
T 3i5x_A 446 ICKDELPFVRELEDAKNIV 464 (563)
T ss_dssp EEGGGHHHHHHHHHHHCCC
T ss_pred EchhHHHHHHHHHHHhCCC
Confidence 9999988888888776543
No 17
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.89 E-value=1.9e-23 Score=155.88 Aligned_cols=108 Identities=34% Similarity=0.619 Sum_probs=99.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++++|.++++.|++|+.+|||||+++++|+|+|++++||++|+|++...|+||+||+||.|+.|.++++
T Consensus 274 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 353 (391)
T 1xti_A 274 NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 353 (391)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEE
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecC-ChhHHHHHHHHHhhCCCCCChHHH
Q 037139 82 LTFH-DTDVFYDLKQMLIQSNSPVPPELA 109 (135)
Q Consensus 82 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 109 (135)
+.+. +...++.+++.+.....++|..+.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (391)
T 1xti_A 354 VSDENDAKILNDVQDRFEVNISELPDEID 382 (391)
T ss_dssp ECSHHHHHHHHHHHHHTTCCCEECCSCCC
T ss_pred EcccchHHHHHHHHHHhcCChhhCCcccc
Confidence 9876 446678888888888888887644
No 18
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.89 E-value=6.3e-23 Score=161.22 Aligned_cols=99 Identities=30% Similarity=0.560 Sum_probs=93.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++++|.+++++|++|+.+|||||+++++|+|+|++++||++|+|.+...|+||+||+||.|+.|.++++
T Consensus 315 ~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~ 394 (579)
T 3sqw_A 315 DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLF 394 (579)
T ss_dssp TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEE
T ss_pred CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhC
Q 037139 82 LTFHDTDVFYDLKQMLIQS 100 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~ 100 (135)
+.+.+...++.+++.....
T Consensus 395 ~~~~e~~~~~~l~~~~~~~ 413 (579)
T 3sqw_A 395 ICKDELPFVRELEDAKNIV 413 (579)
T ss_dssp EEGGGHHHHHHHHHHHCCC
T ss_pred EcccHHHHHHHHHHHhCCC
Confidence 9999988888888776443
No 19
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.89 E-value=4e-23 Score=154.90 Aligned_cols=106 Identities=37% Similarity=0.616 Sum_probs=94.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCC------CCHHHHHHHhhhcCCCCCC
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMP------GNIEMYTHRIGRTGRAGKT 75 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p------~~~~~~~qr~GR~gR~~~~ 75 (135)
|+.+..+||+|++++|.++++.|++|+.+|||||+++++|+|+|++++||++|+| .+...|+||+||+||.|..
T Consensus 290 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~ 369 (412)
T 3fht_A 290 GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKR 369 (412)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCC
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCC
Confidence 6788999999999999999999999999999999999999999999999999999 4678999999999999999
Q ss_pred ceEEEEeecCC-hhHHHHHHHHHhhCCCCCChH
Q 037139 76 GVATTFLTFHD-TDVFYDLKQMLIQSNSPVPPE 107 (135)
Q Consensus 76 g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 107 (135)
|.+++++...+ ...++.+++.+.....+++..
T Consensus 370 g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 402 (412)
T 3fht_A 370 GLAVNMVDSKHSMNILNRIQEHFNKKIERLDTD 402 (412)
T ss_dssp EEEEEEECSHHHHHHHHHHHHHHTCCCEEC---
T ss_pred ceEEEEEcChhhHHHHHHHHHHHCCccccCCCc
Confidence 99999998764 677888888888777666543
No 20
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.88 E-value=1.4e-22 Score=157.90 Aligned_cols=89 Identities=33% Similarity=0.526 Sum_probs=84.2
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++++|.+++++|++|+++|||||+++++|+|+|++++||++|+|.+.+.|.||+||+||.|.+|.++++
T Consensus 260 g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~ 339 (523)
T 1oyw_A 260 GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLF 339 (523)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHH
Q 037139 82 LTFHDTDVF 90 (135)
Q Consensus 82 ~~~~~~~~~ 90 (135)
+.+.+....
T Consensus 340 ~~~~d~~~~ 348 (523)
T 1oyw_A 340 YDPADMAWL 348 (523)
T ss_dssp ECHHHHHHH
T ss_pred eCHHHHHHH
Confidence 987655443
No 21
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.88 E-value=1.5e-22 Score=159.79 Aligned_cols=90 Identities=29% Similarity=0.414 Sum_probs=84.4
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
.|+.+..+||+|++++|.+++++|++|+++|||||+++++|+|+|+|++||++|+|.+.+.|+||+||+||.|.+|.+++
T Consensus 290 ~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~ 369 (591)
T 2v1x_A 290 LGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCIL 369 (591)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred CCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEE
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCChhHH
Q 037139 81 FLTFHDTDVF 90 (135)
Q Consensus 81 ~~~~~~~~~~ 90 (135)
++.+.+....
T Consensus 370 l~~~~D~~~~ 379 (591)
T 2v1x_A 370 YYGFGDIFRI 379 (591)
T ss_dssp EECHHHHHHH
T ss_pred EEChHHHHHH
Confidence 9987655433
No 22
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.88 E-value=1e-22 Score=151.70 Aligned_cols=104 Identities=39% Similarity=0.707 Sum_probs=91.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCC------CHHHHHHHhhhcCCCCCC
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPG------NIEMYTHRIGRTGRAGKT 75 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~------~~~~~~qr~GR~gR~~~~ 75 (135)
|+.+..+||+|++++|.++++.|++|+.+|||||+++++|+|+|++++||++|+|+ +...|+||+||+||.|+.
T Consensus 267 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~ 346 (395)
T 3pey_A 267 GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRK 346 (395)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCC
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCC
Confidence 67889999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ceEEEEeecC-ChhHHHHHHHHHh-hCCCCCC
Q 037139 76 GVATTFLTFH-DTDVFYDLKQMLI-QSNSPVP 105 (135)
Q Consensus 76 g~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~ 105 (135)
|.+++++... +....+.+++.+. .....++
T Consensus 347 g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 378 (395)
T 3pey_A 347 GVAISFVHDKNSFNILSAIQKYFGDIEMTRVP 378 (395)
T ss_dssp EEEEEEECSHHHHHHHHHHHHHTTSCCCEECC
T ss_pred ceEEEEEechHHHHHHHHHHHHhCCceeecCC
Confidence 9999999864 4455666666665 3333333
No 23
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.87 E-value=1.8e-22 Score=147.61 Aligned_cols=94 Identities=40% Similarity=0.706 Sum_probs=85.4
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEEee
Q 037139 4 RVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLT 83 (135)
Q Consensus 4 ~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~~~ 83 (135)
.+..+||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++||++|+|++...|.||+||+||.|+.|.+++++.
T Consensus 242 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 242 NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHh
Q 037139 84 FHDTDVFYDLKQMLI 98 (135)
Q Consensus 84 ~~~~~~~~~~~~~~~ 98 (135)
.+....+.+++.+.
T Consensus 322 -~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 322 -NEYWLEKEVKKVSQ 335 (337)
T ss_dssp -SCHHHHHHHC----
T ss_pred -CcHHHHHHHHHHhc
Confidence 77777777776654
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.87 E-value=6.2e-24 Score=158.50 Aligned_cols=108 Identities=36% Similarity=0.670 Sum_probs=0.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
|+.+..+||+|++++|.++++.|++|+.+|||||+++++|+|+|++++||++|+|++...|+||+||+||.|+.|.++++
T Consensus 283 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 362 (394)
T 1fuu_A 283 KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINF 362 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEE
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCChhHHHHHHHHHhhCCCCCChHHH
Q 037139 82 LTFHDTDVFYDLKQMLIQSNSPVPPELA 109 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 109 (135)
+.+.+...++.+++++.....++|..+.
T Consensus 363 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 390 (394)
T 1fuu_A 363 VTNEDVGAMRELEKFYSTQIEELPSDIA 390 (394)
T ss_dssp ----------------------------
T ss_pred EchhHHHHHHHHHHHhCCcccccCcchh
Confidence 9999998999999988888887777654
No 25
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.86 E-value=1.7e-23 Score=160.81 Aligned_cols=105 Identities=37% Similarity=0.608 Sum_probs=0.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCC------CHHHHHHHhhhcCCCCCC
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPG------NIEMYTHRIGRTGRAGKT 75 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~------~~~~~~qr~GR~gR~~~~ 75 (135)
|+.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|. +...|+||+||+||.|..
T Consensus 357 ~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~ 436 (479)
T 3fmp_B 357 GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKR 436 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCC
Confidence 57789999999999999999999999999999999999999999999999999995 668999999999999999
Q ss_pred ceEEEEeecCC-hhHHHHHHHHHhhCCCCCCh
Q 037139 76 GVATTFLTFHD-TDVFYDLKQMLIQSNSPVPP 106 (135)
Q Consensus 76 g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 106 (135)
|.+++++...+ ...++.+++.+.....+++.
T Consensus 437 G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 468 (479)
T 3fmp_B 437 GLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 468 (479)
T ss_dssp --------------------------------
T ss_pred ceEEEEEcCcchHHHHHHHHHHhCCCceECCC
Confidence 99999998764 66777788877776665554
No 26
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.84 E-value=4.2e-22 Score=154.60 Aligned_cols=107 Identities=36% Similarity=0.620 Sum_probs=74.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCC------CCHHHHHHHhhhcCCCCCC
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMP------GNIEMYTHRIGRTGRAGKT 75 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p------~~~~~~~qr~GR~gR~~~~ 75 (135)
|+.+.++||+|++++|..+++.|++|+.+|||||+++++|+|+|++++||++|.| .+...|+||+||+||.|+.
T Consensus 381 ~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~ 460 (508)
T 3fho_A 381 GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRV 460 (508)
T ss_dssp TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCC
Confidence 5678899999999999999999999999999999999999999999999999999 7899999999999999999
Q ss_pred ceEEEEeec-CChhHHHHHHHHHhhCCCCCChHH
Q 037139 76 GVATTFLTF-HDTDVFYDLKQMLIQSNSPVPPEL 108 (135)
Q Consensus 76 g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 108 (135)
|.+++++.. .+...++.+++++.....+++..-
T Consensus 461 g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~ 494 (508)
T 3fho_A 461 GVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDD 494 (508)
T ss_dssp CEEEEEECTTTSSSSHHHHHHHSCCCCC------
T ss_pred cEEEEEEeChHHHHHHHHHHHHHCCCcccCCCcc
Confidence 999999984 466778888888888877776543
No 27
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.83 E-value=3.6e-21 Score=149.22 Aligned_cols=84 Identities=29% Similarity=0.402 Sum_probs=35.5
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhc-CCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRT-KRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
|.....+||+|++++|.+++++|++ |+++|||||+++++|+|+|+|++||+||+|+++..|+||+|| ||. ..|.++.
T Consensus 426 g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~ 503 (556)
T 4a2p_A 426 GRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCIL 503 (556)
T ss_dssp ----------------------------CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEE
T ss_pred ccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEE
Confidence 4455667889999999999999999 999999999999999999999999999999999999999999 998 7889999
Q ss_pred EeecCCh
Q 037139 81 FLTFHDT 87 (135)
Q Consensus 81 ~~~~~~~ 87 (135)
++...+.
T Consensus 504 l~~~~~~ 510 (556)
T 4a2p_A 504 VTSKTEV 510 (556)
T ss_dssp EESCHHH
T ss_pred EEeCcch
Confidence 9887654
No 28
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.82 E-value=3.3e-21 Score=149.13 Aligned_cols=89 Identities=30% Similarity=0.364 Sum_probs=58.0
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhc-CCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEE
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRT-KRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTF 81 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~ 81 (135)
.....+||+|++++|.+++++|++ |+++|||||+++++|+|+|++++||+||+|+++..|+||+|| ||. ..|.++.+
T Consensus 426 ~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l 503 (555)
T 3tbk_A 426 RGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLL 503 (555)
T ss_dssp --------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEE
T ss_pred cCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEE
Confidence 344556779999999999999999 999999999999999999999999999999999999999999 888 78999999
Q ss_pred eecCChhHHHHH
Q 037139 82 LTFHDTDVFYDL 93 (135)
Q Consensus 82 ~~~~~~~~~~~~ 93 (135)
+...+......+
T Consensus 504 ~~~~~~~~~~~~ 515 (555)
T 3tbk_A 504 TSSADVIEKEKA 515 (555)
T ss_dssp ESCHHHHHHHHH
T ss_pred EcCCCHHHHHHH
Confidence 987765544444
No 29
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.81 E-value=9e-20 Score=145.46 Aligned_cols=82 Identities=27% Similarity=0.369 Sum_probs=67.9
Q ss_pred CceEEEecCC--------CCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCC
Q 037139 2 GYRVTTLHGG--------KSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG 73 (135)
Q Consensus 2 g~~v~~~hg~--------~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~ 73 (135)
|+++..+||+ |++++|.+++++|++|+++|||||+++++|+|+|++++||+||+|+++..|+||+|||||.|
T Consensus 430 g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 430 GVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp ---CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred CcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 7889999999 99999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCceEEEEeecC
Q 037139 74 KTGVATTFLTFH 85 (135)
Q Consensus 74 ~~g~~~~~~~~~ 85 (135)
+.++++....
T Consensus 510 --~~~~l~~~~~ 519 (699)
T 4gl2_A 510 --STYVLVAHSG 519 (699)
T ss_dssp --CEEEEEEESS
T ss_pred --ceEEEEEeCC
Confidence 3344444433
No 30
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.81 E-value=1.5e-19 Score=144.32 Aligned_cols=92 Identities=24% Similarity=0.364 Sum_probs=84.5
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecC-----CCCHHHHHHHhhhcCCCCCCc
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDM-----PGNIEMYTHRIGRTGRAGKTG 76 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~-----p~~~~~~~qr~GR~gR~~~~g 76 (135)
|+++..+||+|++.+|.+++++|++|+++|||||+++++|+|+|++++||++|. |.+..+|+||+||+||. ..|
T Consensus 469 gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G 547 (661)
T 2d7d_A 469 GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEG 547 (661)
T ss_dssp TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTC
T ss_pred CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCC
Confidence 778999999999999999999999999999999999999999999999999997 99999999999999998 689
Q ss_pred eEEEEeecCChhHHHHHH
Q 037139 77 VATTFLTFHDTDVFYDLK 94 (135)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~ 94 (135)
.+++++...+....+.++
T Consensus 548 ~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 548 RVIMYADKITKSMEIAIN 565 (661)
T ss_dssp EEEEECSSCCHHHHHHHH
T ss_pred EEEEEEeCCCHHHHHHHH
Confidence 999999887765544433
No 31
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.81 E-value=4.6e-20 Score=139.67 Aligned_cols=86 Identities=33% Similarity=0.516 Sum_probs=78.6
Q ss_pred CceEEEecC--------CCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCC
Q 037139 2 GYRVTTLHG--------GKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG 73 (135)
Q Consensus 2 g~~v~~~hg--------~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~ 73 (135)
|+.+..+|| +|++++|.+++++|++|+.+|||||+++++|+|+|.+++||++|+|+++..|.||+||+||.|
T Consensus 385 ~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g 464 (494)
T 1wp9_A 385 GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM 464 (494)
T ss_dssp TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC
T ss_pred CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCC
Confidence 678899999 999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceEEEEeecCChh
Q 037139 74 KTGVATTFLTFHDTD 88 (135)
Q Consensus 74 ~~g~~~~~~~~~~~~ 88 (135)
+ |.++.++...+.+
T Consensus 465 ~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 465 P-GRVIILMAKGTRD 478 (494)
T ss_dssp C-SEEEEEEETTSHH
T ss_pred C-ceEEEEEecCCHH
Confidence 7 9999999887553
No 32
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.81 E-value=2.2e-19 Score=143.41 Aligned_cols=93 Identities=23% Similarity=0.342 Sum_probs=84.7
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecC-----CCCHHHHHHHhhhcCCCCCCc
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDM-----PGNIEMYTHRIGRTGRAGKTG 76 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~-----p~~~~~~~qr~GR~gR~~~~g 76 (135)
|+++..+||+|++.+|.+++++|+.|+++|||||+++++|+|+|++++||++|. |.+..+|+||+||+||.+ .|
T Consensus 463 gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G 541 (664)
T 1c4o_A 463 GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RG 541 (664)
T ss_dssp TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TC
T ss_pred CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CC
Confidence 678999999999999999999999999999999999999999999999999997 899999999999999985 89
Q ss_pred eEEEEeecCChhHHHHHHH
Q 037139 77 VATTFLTFHDTDVFYDLKQ 95 (135)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~ 95 (135)
.+++++...+....+.+.+
T Consensus 542 ~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 542 EVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp EEEEECSSCCHHHHHHHHH
T ss_pred EEEEEEcCCCHHHHHHHHH
Confidence 9999998877655444443
No 33
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.80 E-value=4.9e-20 Score=140.92 Aligned_cols=101 Identities=21% Similarity=0.274 Sum_probs=80.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEE-------------------ecCCCCHHHH
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN-------------------YDMPGNIEMY 62 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~-------------------~d~p~~~~~~ 62 (135)
|+++..+|| ++|.+++++|++|+++|||||+++++|+|+| +++||+ ++.|.+..+|
T Consensus 201 ~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~ 275 (440)
T 1yks_A 201 GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSA 275 (440)
T ss_dssp TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHH
T ss_pred CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHH
Confidence 678999999 4688999999999999999999999999999 999986 8999999999
Q ss_pred HHHhhhcCCC-CCCceEEEEe---ecCChhHHHHHHHHHhhCCCCCChH
Q 037139 63 THRIGRTGRA-GKTGVATTFL---TFHDTDVFYDLKQMLIQSNSPVPPE 107 (135)
Q Consensus 63 ~qr~GR~gR~-~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (135)
+||+||+||. +..|.+++++ .+.+...+..+++.+.....+++..
T Consensus 276 ~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~ 324 (440)
T 1yks_A 276 AQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGG 324 (440)
T ss_dssp HHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGG
T ss_pred HHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccccc
Confidence 9999999997 6789999996 5667777888888776666655543
No 34
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.80 E-value=3e-19 Score=134.77 Aligned_cols=89 Identities=28% Similarity=0.528 Sum_probs=80.0
Q ss_pred CceEE-EecCCCCHHHHHHHHHHHhcCCCcEEEe----cCCCcccccccC-CcEEEEecCC--CCHHHHHHHhhhcCCCC
Q 037139 2 GYRVT-TLHGGKSQEQREISLEGFRTKRYNVLVA----TDVAGRGIDIPD-VAHVINYDMP--GNIEMYTHRIGRTGRAG 73 (135)
Q Consensus 2 g~~v~-~~hg~~~~~~r~~~~~~f~~g~~~ilv~----T~~~~~G~d~~~-v~~vi~~d~p--~~~~~~~qr~GR~gR~~ 73 (135)
|+.+. .+||. +|+ +++|++|+++|||| |+++++|+|+|+ +++||++|+| .+...|+||+||+||.|
T Consensus 276 ~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g 349 (414)
T 3oiy_A 276 KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRIL 349 (414)
T ss_dssp TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEE
T ss_pred CCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCC
Confidence 67787 88885 344 99999999999999 999999999999 9999999999 99999999999999987
Q ss_pred ----CCceEEEEeecCChhHHHHHHHHHh
Q 037139 74 ----KTGVATTFLTFHDTDVFYDLKQMLI 98 (135)
Q Consensus 74 ----~~g~~~~~~~~~~~~~~~~~~~~~~ 98 (135)
..|.+++++ .+...++.+++.+.
T Consensus 350 ~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 350 NGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp TTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred CCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 478999988 67778888888887
No 35
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.79 E-value=2.7e-19 Score=143.70 Aligned_cols=99 Identities=23% Similarity=0.314 Sum_probs=83.7
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEE----ec----CCCCHHHHHHHhhhcCCCC--
Q 037139 4 RVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN----YD----MPGNIEMYTHRIGRTGRAG-- 73 (135)
Q Consensus 4 ~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~----~d----~p~~~~~~~qr~GR~gR~~-- 73 (135)
.+.++||+|++++|..+++.|++|+++|||||+++++|+|+|++++||+ || .|.+..+|.||+|||||.|
T Consensus 296 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~ 375 (720)
T 2zj8_A 296 GVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYD 375 (720)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTC
T ss_pred CeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCC
Confidence 5899999999999999999999999999999999999999999999998 77 6899999999999999987
Q ss_pred CCceEEEEeecCChhHHHHHHHHHhhCCCCC
Q 037139 74 KTGVATTFLTFHDTDVFYDLKQMLIQSNSPV 104 (135)
Q Consensus 74 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (135)
..|.|++++...+. ...+++++.....++
T Consensus 376 ~~G~~~~l~~~~~~--~~~~~~~~~~~~~~i 404 (720)
T 2zj8_A 376 EVGEGIIVSTSDDP--REVMNHYIFGKPEKL 404 (720)
T ss_dssp SEEEEEEECSSSCH--HHHHHHHTTSCCCCC
T ss_pred CCceEEEEecCccH--HHHHHHHhcCCCCCc
Confidence 46889999887662 223334544443333
No 36
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.79 E-value=2.6e-19 Score=143.58 Aligned_cols=84 Identities=29% Similarity=0.487 Sum_probs=73.6
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEE----ec-------CCCCHHHHHHHhhhcCC
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN----YD-------MPGNIEMYTHRIGRTGR 71 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~----~d-------~p~~~~~~~qr~GR~gR 71 (135)
..+.++||+|++++|..+++.|++|+++|||||+++++|+|+|++++||+ || .|.+..+|.||+|||||
T Consensus 313 ~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR 392 (715)
T 2va8_A 313 KGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGR 392 (715)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCC
T ss_pred cCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCC
Confidence 35899999999999999999999999999999999999999999999998 99 89999999999999999
Q ss_pred CC--CCceEEEEeecCC
Q 037139 72 AG--KTGVATTFLTFHD 86 (135)
Q Consensus 72 ~~--~~g~~~~~~~~~~ 86 (135)
.| ..|.|+.++...+
T Consensus 393 ~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 393 PGFDQIGESIVVVRDKE 409 (715)
T ss_dssp TTTCSCEEEEEECSCGG
T ss_pred CCCCCCceEEEEeCCch
Confidence 87 4788999887654
No 37
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.79 E-value=2.9e-19 Score=147.54 Aligned_cols=97 Identities=22% Similarity=0.379 Sum_probs=84.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCC--CcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKR--YNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVAT 79 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~--~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~ 79 (135)
|+++..+||+|++.+|..++++|++|+ ++|||||+++++|+|+|.+++||++|+|+++..|.|++||+||.|+.+.++
T Consensus 528 g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~ 607 (968)
T 3dmq_A 528 GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQ 607 (968)
T ss_dssp CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCE
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEE
Confidence 789999999999999999999999998 999999999999999999999999999999999999999999999887655
Q ss_pred EEeecCChhHHHHHHHHHh
Q 037139 80 TFLTFHDTDVFYDLKQMLI 98 (135)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~ 98 (135)
++....+....+.+.+.+.
T Consensus 608 v~~~~~~~t~ee~i~~~~~ 626 (968)
T 3dmq_A 608 IHVPYLEKTAQSVLVRWYH 626 (968)
T ss_dssp EEEEEETTSHHHHHHHHHH
T ss_pred EEEecCCChHHHHHHHHHH
Confidence 5544433444444555553
No 38
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.79 E-value=6.8e-20 Score=148.64 Aligned_cols=84 Identities=29% Similarity=0.402 Sum_probs=41.2
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhc-CCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRT-KRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
|..+..+||+|++++|.+++++|++ |+++|||||+++++|+|+|+|++||+||+|+++..|+||+|| ||. ..|.++.
T Consensus 667 G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~ 744 (797)
T 4a2q_A 667 GRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCIL 744 (797)
T ss_dssp ---------------------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEE
T ss_pred ecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEE
Confidence 4456677999999999999999999 999999999999999999999999999999999999999999 998 7899999
Q ss_pred EeecCCh
Q 037139 81 FLTFHDT 87 (135)
Q Consensus 81 ~~~~~~~ 87 (135)
++...+.
T Consensus 745 l~~~~~~ 751 (797)
T 4a2q_A 745 VTSKTEV 751 (797)
T ss_dssp EECCHHH
T ss_pred EEeCCcH
Confidence 9877544
No 39
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.79 E-value=3.8e-20 Score=149.74 Aligned_cols=93 Identities=24% Similarity=0.407 Sum_probs=82.1
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCC-CHHHHHHHhhhcCCCCCCceEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPG-NIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~-~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
|+.+..+||+|++++|++++++|++|+++|||||+++++|+|+|++++||++|.|. +...|.||+||+||.|..|.|++
T Consensus 613 ~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~il 692 (780)
T 1gm5_A 613 EFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFL 692 (780)
T ss_dssp --CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEEC
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEE
Confidence 56789999999999999999999999999999999999999999999999999996 78999999999999999999999
Q ss_pred EeecCChhHHHHHH
Q 037139 81 FLTFHDTDVFYDLK 94 (135)
Q Consensus 81 ~~~~~~~~~~~~~~ 94 (135)
++.+.+......++
T Consensus 693 l~~~~~~~~~~rl~ 706 (780)
T 1gm5_A 693 VVGDVGEEAMERLR 706 (780)
T ss_dssp CCCSCCHHHHHHHH
T ss_pred EECCCChHHHHHHH
Confidence 98854444443333
No 40
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.79 E-value=9.3e-21 Score=151.07 Aligned_cols=89 Identities=27% Similarity=0.369 Sum_probs=46.8
Q ss_pred ceEEEe--------cCCCCHHHHHHHHHHHhc-CCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCC
Q 037139 3 YRVTTL--------HGGKSQEQREISLEGFRT-KRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAG 73 (135)
Q Consensus 3 ~~v~~~--------hg~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~ 73 (135)
+++..+ ||+|++++|.+++++|++ |+++|||||+++++|+|+|++++||+||+|++...|+||+|| ||.
T Consensus 427 ~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~- 504 (696)
T 2ykg_A 427 LKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA- 504 (696)
T ss_dssp CCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------
T ss_pred cceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-
Confidence 566666 669999999999999998 999999999999999999999999999999999999999999 998
Q ss_pred CCceEEEEeecCChhHHHHH
Q 037139 74 KTGVATTFLTFHDTDVFYDL 93 (135)
Q Consensus 74 ~~g~~~~~~~~~~~~~~~~~ 93 (135)
+.|.++.++...+......+
T Consensus 505 ~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 505 RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp CCCEEEEEESCHHHHHHHHH
T ss_pred CCceEEEEecCCCHHHHHHH
Confidence 67899999887665444444
No 41
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.78 E-value=7.3e-19 Score=145.58 Aligned_cols=98 Identities=21% Similarity=0.218 Sum_probs=83.8
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEE----ecC----CCCHHHHHHHhhhcCCCCC-
Q 037139 4 RVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN----YDM----PGNIEMYTHRIGRTGRAGK- 74 (135)
Q Consensus 4 ~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~----~d~----p~~~~~~~qr~GR~gR~~~- 74 (135)
.+.++||+|++.+|+.+++.|++|.++|||||+++++|+|+|.+++||+ ||. |.++.+|.||+||+||.|.
T Consensus 408 gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d 487 (1010)
T 2xgj_A 408 GIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLD 487 (1010)
T ss_dssp TEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTC
T ss_pred CeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCC
Confidence 4889999999999999999999999999999999999999999999998 998 8999999999999999986
Q ss_pred -CceEEEEeecCChhHHHHHHHHHhhCCCC
Q 037139 75 -TGVATTFLTFHDTDVFYDLKQMLIQSNSP 103 (135)
Q Consensus 75 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (135)
.|.+++++.+... ...+.+++.....+
T Consensus 488 ~~G~vi~l~~~~~e--~~~~~~l~~~~~~~ 515 (1010)
T 2xgj_A 488 DRGIVIMMIDEKME--PQVAKGMVKGQADR 515 (1010)
T ss_dssp SSEEEEEEECSCCC--HHHHHHHHSCCCCC
T ss_pred CceEEEEEECCCCC--HHHHHHHHhCCCcc
Confidence 5999999986522 12344444444443
No 42
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.78 E-value=2.6e-19 Score=143.42 Aligned_cols=84 Identities=26% Similarity=0.442 Sum_probs=77.6
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEE----ec---CCCCHHHHHHHhhhcCCCC--
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN----YD---MPGNIEMYTHRIGRTGRAG-- 73 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~----~d---~p~~~~~~~qr~GR~gR~~-- 73 (135)
..+.++||+|++++|..+++.|++|+++|||||+++++|+|+|++++||+ || .|.+..+|.||+|||||.|
T Consensus 297 ~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~ 376 (702)
T 2p6r_A 297 KGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMD 376 (702)
T ss_dssp TTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTC
T ss_pred cCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCC
Confidence 35788999999999999999999999999999999999999999999998 76 7899999999999999987
Q ss_pred CCceEEEEeecCC
Q 037139 74 KTGVATTFLTFHD 86 (135)
Q Consensus 74 ~~g~~~~~~~~~~ 86 (135)
..|.|+.++...+
T Consensus 377 ~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 377 ERGEAIIIVGKRD 389 (702)
T ss_dssp SCEEEEEECCGGG
T ss_pred CCceEEEEecCcc
Confidence 4788999988765
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.77 E-value=8.7e-19 Score=138.93 Aligned_cols=101 Identities=20% Similarity=0.230 Sum_probs=88.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEE--------------------EEecCCCCHHH
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHV--------------------INYDMPGNIEM 61 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~v--------------------i~~d~p~~~~~ 61 (135)
|+.+..+||+ +|.+++++|++|+.+|||||+++++|+|+| +++| +++|.|.+..+
T Consensus 379 g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~ 453 (618)
T 2whx_A 379 GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPAS 453 (618)
T ss_dssp TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHH
T ss_pred CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHH
Confidence 6789999985 688899999999999999999999999998 8887 78888999999
Q ss_pred HHHHhhhcCCCCC-CceEEEEee---cCChhHHHHHHHHHhhCCCCCChH
Q 037139 62 YTHRIGRTGRAGK-TGVATTFLT---FHDTDVFYDLKQMLIQSNSPVPPE 107 (135)
Q Consensus 62 ~~qr~GR~gR~~~-~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 107 (135)
|+||+||+||.|. .|.+++++. +.+...+..+++.+......+++.
T Consensus 454 yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~~ 503 (618)
T 2whx_A 454 AAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEG 503 (618)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTC
T ss_pred HHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCcc
Confidence 9999999999964 899999997 677777888888777665555554
No 44
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.77 E-value=1.9e-18 Score=138.00 Aligned_cols=100 Identities=25% Similarity=0.404 Sum_probs=82.2
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhc--CCCcEEEecCCCcccccccCCcEEEEecC--------------CCCHHHHHHH
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRT--KRYNVLVATDVAGRGIDIPDVAHVINYDM--------------PGNIEMYTHR 65 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~--g~~~ilv~T~~~~~G~d~~~v~~vi~~d~--------------p~~~~~~~qr 65 (135)
|+.+.++||+|++++|.++++.|++ |+++|||||+++++|+|+ ++++||++|. |.+..+|+||
T Consensus 344 g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR 422 (677)
T 3rc3_A 344 GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQI 422 (677)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHH
T ss_pred CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHH
Confidence 6789999999999999999999999 889999999999999999 8999999998 7899999999
Q ss_pred hhhcCCCCCC---ceEEEEeecCChhHHHHHHHHHhhCCCCCCh
Q 037139 66 IGRTGRAGKT---GVATTFLTFHDTDVFYDLKQMLIQSNSPVPP 106 (135)
Q Consensus 66 ~GR~gR~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (135)
+|||||.|.. |.++.+... + ...+++++.....++..
T Consensus 423 ~GRAGR~g~~g~~G~v~~l~~~-d---~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 423 AGRAGRFSSRFKEGEVTTMNHE-D---LSLLKEILKRPVDPIRA 462 (677)
T ss_dssp HTTBTCTTSSCSSEEEEESSTT-H---HHHHHHHHHSCCCCCCC
T ss_pred hcCCCCCCCCCCCEEEEEEecc-h---HHHHHHHHhcCcchhhh
Confidence 9999999854 666555332 2 22445555555544443
No 45
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.77 E-value=9.3e-19 Score=146.03 Aligned_cols=102 Identities=20% Similarity=0.194 Sum_probs=83.0
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecC--------CCCHHHHHHHhhhcCCCC--C
Q 037139 5 VTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDM--------PGNIEMYTHRIGRTGRAG--K 74 (135)
Q Consensus 5 v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~--------p~~~~~~~qr~GR~gR~~--~ 74 (135)
+.++||+|++.+|+.+++.|++|+++|||||+++++|+|+|++++||+++. |.++.+|+||+||+||.| .
T Consensus 507 V~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~ 586 (1108)
T 3l9o_A 507 IGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDD 586 (1108)
T ss_dssp EEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCS
T ss_pred eeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCC
Confidence 889999999999999999999999999999999999999999999996654 347888999999999998 5
Q ss_pred CceEEEEeecCChhHHHHHHHHHhhCCCCCChHH
Q 037139 75 TGVATTFLTFHDTDVFYDLKQMLIQSNSPVPPEL 108 (135)
Q Consensus 75 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 108 (135)
.|.+++++.+... ...+.+++.....++...+
T Consensus 587 ~G~~ill~~~~~~--~~~~~~l~~~~~~~L~S~f 618 (1108)
T 3l9o_A 587 RGIVIMMIDEKME--PQVAKGMVKGQADRLDSAF 618 (1108)
T ss_dssp SEEEEEEECCCCC--HHHHHHHHHCCCCCCCCCC
T ss_pred ceEEEEEecCCcC--HHHHHHHhcCCCccccccc
Confidence 7888888876533 2345666666655555443
No 46
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.77 E-value=6.8e-19 Score=127.13 Aligned_cols=84 Identities=20% Similarity=0.336 Sum_probs=63.5
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcC-CCc-EEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCc--e
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTK-RYN-VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTG--V 77 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g-~~~-ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g--~ 77 (135)
|+.+..+||++++++|.+++++|+++ +++ +|++|+++++|+|++.+++||+||+||++..|.|++||++|.|+.+ .
T Consensus 137 g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~ 216 (271)
T 1z5z_A 137 NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVI 216 (271)
T ss_dssp CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCE
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceE
Confidence 67888999999999999999999999 788 6889999999999999999999999999999999999999998764 4
Q ss_pred EEEEeecC
Q 037139 78 ATTFLTFH 85 (135)
Q Consensus 78 ~~~~~~~~ 85 (135)
++.++...
T Consensus 217 v~~li~~~ 224 (271)
T 1z5z_A 217 VHKLISVG 224 (271)
T ss_dssp EEEEEETT
T ss_pred EEEEeeCC
Confidence 56666655
No 47
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.76 E-value=2.7e-19 Score=147.38 Aligned_cols=84 Identities=29% Similarity=0.402 Sum_probs=41.5
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhc-CCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRT-KRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~-g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
|..+..+||+|++.+|.+++++|++ |+++|||||+++++|+|+|+|++||+||+|+++..|+||+|| ||. ..|.++.
T Consensus 667 G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~ 744 (936)
T 4a2w_A 667 GRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCIL 744 (936)
T ss_dssp ---------------------------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEE
T ss_pred cCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEE
Confidence 4456677999999999999999999 999999999999999999999999999999999999999999 998 6788998
Q ss_pred EeecCCh
Q 037139 81 FLTFHDT 87 (135)
Q Consensus 81 ~~~~~~~ 87 (135)
++...+.
T Consensus 745 Li~~~t~ 751 (936)
T 4a2w_A 745 VTSKTEV 751 (936)
T ss_dssp EESCHHH
T ss_pred EEeCCCH
Confidence 8876543
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.75 E-value=1.3e-18 Score=139.05 Aligned_cols=99 Identities=19% Similarity=0.270 Sum_probs=83.9
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEE--------------------ecCCCCHHH
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN--------------------YDMPGNIEM 61 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~--------------------~d~p~~~~~ 61 (135)
|+.+..+||+ +|.+++++|++|+++|||||+++++|+|+| +++||+ +|.|.+.++
T Consensus 434 g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~ 508 (673)
T 2wv9_A 434 GKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSAS 508 (673)
T ss_dssp TCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHH
T ss_pred CCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHH
Confidence 6789999994 789999999999999999999999999999 999998 679999999
Q ss_pred HHHHhhhcCCC-CCCceEEEEe---ecCChhHHHHHHHHHhhCCCCCC
Q 037139 62 YTHRIGRTGRA-GKTGVATTFL---TFHDTDVFYDLKQMLIQSNSPVP 105 (135)
Q Consensus 62 ~~qr~GR~gR~-~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 105 (135)
|+||+||+||. ++.|.+++++ .+.+...+..++..+.....+++
T Consensus 509 y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~~~~~ 556 (673)
T 2wv9_A 509 AAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDNIHLP 556 (673)
T ss_dssp HHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSCBT
T ss_pred HHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhhccCC
Confidence 99999999998 7889999996 46666666667666544333333
No 49
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.74 E-value=6.2e-18 Score=141.59 Aligned_cols=84 Identities=26% Similarity=0.367 Sum_probs=79.2
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecC-CCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDM-PGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~-p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
++++..+||+|++++|++++++|++|+++|||||+++++|+|+|++++||+++. +++..+|.||+||+||.|+.|.|++
T Consensus 838 ~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~l 917 (1151)
T 2eyq_A 838 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL 917 (1151)
T ss_dssp TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEE
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEE
Confidence 578999999999999999999999999999999999999999999999999988 5799999999999999999999999
Q ss_pred EeecC
Q 037139 81 FLTFH 85 (135)
Q Consensus 81 ~~~~~ 85 (135)
++...
T Consensus 918 l~~~~ 922 (1151)
T 2eyq_A 918 LTPHP 922 (1151)
T ss_dssp EECCG
T ss_pred EECCc
Confidence 88654
No 50
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.74 E-value=1.2e-18 Score=134.60 Aligned_cols=80 Identities=21% Similarity=0.192 Sum_probs=73.5
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEec-CCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVAT-DVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATT 80 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T-~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~ 80 (135)
|.++..+||+|++++|++++++|++|+.+||||| +++++|+|+|++++||++++|++...|.|++||+||.|..+..+.
T Consensus 371 ~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~ 450 (510)
T 2oca_A 371 YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIAT 450 (510)
T ss_dssp CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCE
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEE
Confidence 3478999999999999999999999999999999 999999999999999999999999999999999999887653333
Q ss_pred E
Q 037139 81 F 81 (135)
Q Consensus 81 ~ 81 (135)
+
T Consensus 451 i 451 (510)
T 2oca_A 451 V 451 (510)
T ss_dssp E
T ss_pred E
Confidence 3
No 51
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.73 E-value=2.7e-18 Score=131.58 Aligned_cols=81 Identities=32% Similarity=0.522 Sum_probs=73.4
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCC---ceEEEE
Q 037139 5 VTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKT---GVATTF 81 (135)
Q Consensus 5 v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~---g~~~~~ 81 (135)
+..+||+++.++|++++++|++|+++|||||+++++|+|+|++++||++|+|+++..|.||+||+||.|+. ..++.+
T Consensus 371 ~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~l 450 (472)
T 2fwr_A 371 IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYEL 450 (472)
T ss_dssp CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEE
T ss_pred cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEE
Confidence 55799999999999999999999999999999999999999999999999999999999999999998743 355556
Q ss_pred eecC
Q 037139 82 LTFH 85 (135)
Q Consensus 82 ~~~~ 85 (135)
+...
T Consensus 451 v~~~ 454 (472)
T 2fwr_A 451 ISRG 454 (472)
T ss_dssp EECS
T ss_pred EeCC
Confidence 6654
No 52
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.73 E-value=9.9e-18 Score=128.46 Aligned_cols=78 Identities=22% Similarity=0.284 Sum_probs=71.1
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEec--------------------CCCCHHH
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYD--------------------MPGNIEM 61 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d--------------------~p~~~~~ 61 (135)
|+.+..+||++. .++++.|++|+.+|||||+++++|+|+|+ ++||++| .|.+..+
T Consensus 212 g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~ 286 (451)
T 2jlq_A 212 GKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPAS 286 (451)
T ss_dssp TCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHH
T ss_pred CCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHH
Confidence 678889999864 57999999999999999999999999999 9999998 9999999
Q ss_pred HHHHhhhcCCCCC-CceEEEEeec
Q 037139 62 YTHRIGRTGRAGK-TGVATTFLTF 84 (135)
Q Consensus 62 ~~qr~GR~gR~~~-~g~~~~~~~~ 84 (135)
|+||+||+||.|. .|.++++...
T Consensus 287 y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 287 AAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSC
T ss_pred HHHhccccCCCCCCCccEEEEeCC
Confidence 9999999999997 7888888643
No 53
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.72 E-value=8.2e-19 Score=142.05 Aligned_cols=83 Identities=22% Similarity=0.300 Sum_probs=77.9
Q ss_pred CceEEEecCCCCHHHHHHHHHHHh-----cCCCcEEEecCCCcccccccCCcEEEEecC------------------CCC
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFR-----TKRYNVLVATDVAGRGIDIPDVAHVINYDM------------------PGN 58 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~-----~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~------------------p~~ 58 (135)
++.+..+||+|++++|.++++.|+ +|+.+|||||+++++|+|+|++++||+++. |.+
T Consensus 338 ~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S 417 (773)
T 2xau_A 338 PLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPIS 417 (773)
T ss_dssp CEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECC
T ss_pred CeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCC
Confidence 567999999999999999999999 999999999999999999999999999777 899
Q ss_pred HHHHHHHhhhcCCCCCCceEEEEeecC
Q 037139 59 IEMYTHRIGRTGRAGKTGVATTFLTFH 85 (135)
Q Consensus 59 ~~~~~qr~GR~gR~~~~g~~~~~~~~~ 85 (135)
..+|.||+|||||. .+|.|+.++...
T Consensus 418 ~~s~~QR~GRaGR~-~~G~~~~l~~~~ 443 (773)
T 2xau_A 418 KASAQQRAGRAGRT-RPGKCFRLYTEE 443 (773)
T ss_dssp HHHHHHHHHGGGSS-SSEEEEESSCHH
T ss_pred HHHHHhhccccCCC-CCCEEEEEecHH
Confidence 99999999999999 789999998653
No 54
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.72 E-value=6.1e-18 Score=136.57 Aligned_cols=85 Identities=26% Similarity=0.402 Sum_probs=77.2
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCccccccc--------CCcEEEEecCCCCHHHHHHHhhhcCCC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIP--------DVAHVINYDMPGNIEMYTHRIGRTGRA 72 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~--------~v~~vi~~d~p~~~~~~~qr~GR~gR~ 72 (135)
.|+++.++||++.++++..+.++|+.| .|+|||++++||+|++ ++.+||++|.|.+...|.||+||+||.
T Consensus 455 ~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRq 532 (844)
T 1tf5_A 455 KGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQ 532 (844)
T ss_dssp TTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGG
T ss_pred CCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccC
Confidence 478899999999988888777767665 6999999999999999 788999999999999999999999999
Q ss_pred CCCceEEEEeecCCh
Q 037139 73 GKTGVATTFLTFHDT 87 (135)
Q Consensus 73 ~~~g~~~~~~~~~~~ 87 (135)
|.+|.+++|++..+.
T Consensus 533 G~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 533 GDPGITQFYLSMEDE 547 (844)
T ss_dssp GCCEEEEEEEETTSS
T ss_pred CCCCeEEEEecHHHH
Confidence 999999999997764
No 55
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.72 E-value=2e-18 Score=132.58 Aligned_cols=79 Identities=19% Similarity=0.302 Sum_probs=70.5
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEE--------------------ecCCCCHHH
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN--------------------YDMPGNIEM 61 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~--------------------~d~p~~~~~ 61 (135)
|+.+..+||+ +|.++++.|++|+.+|||||+++++|+|+|+ ++||+ ||.|.+..+
T Consensus 214 g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~ 288 (459)
T 2z83_A 214 GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSAS 288 (459)
T ss_dssp TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHH
T ss_pred CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHH
Confidence 6788999985 6889999999999999999999999999999 99998 779999999
Q ss_pred HHHHhhhcCCCCC-CceEEEEeecC
Q 037139 62 YTHRIGRTGRAGK-TGVATTFLTFH 85 (135)
Q Consensus 62 ~~qr~GR~gR~~~-~g~~~~~~~~~ 85 (135)
|+||+||+||.|. +|.+++++...
T Consensus 289 ~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 289 AAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999987 89999999875
No 56
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.71 E-value=1.1e-17 Score=143.95 Aligned_cols=89 Identities=21% Similarity=0.249 Sum_probs=78.6
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEE----ec------CCCCHHHHHHHhhhcCCC
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN----YD------MPGNIEMYTHRIGRTGRA 72 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~----~d------~p~~~~~~~qr~GR~gR~ 72 (135)
..|++|||+|++++|..+++.|++|.++|||||+++++|+|+|...+||. || .|.+..+|.||+|||||.
T Consensus 1214 ~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~ 1293 (1724)
T 4f92_B 1214 NGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRP 1293 (1724)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCT
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCC
Confidence 45889999999999999999999999999999999999999999998882 43 467899999999999998
Q ss_pred CC--CceEEEEeecCChhHHH
Q 037139 73 GK--TGVATTFLTFHDTDVFY 91 (135)
Q Consensus 73 ~~--~g~~~~~~~~~~~~~~~ 91 (135)
|. .|.+++++...+...++
T Consensus 1294 g~d~~G~avll~~~~~~~~~~ 1314 (1724)
T 4f92_B 1294 LQDDEGRCVIMCQGSKKDFFK 1314 (1724)
T ss_dssp TTCSCEEEEEEEEGGGHHHHH
T ss_pred CCCCceEEEEEecchHHHHHH
Confidence 75 68999999877665543
No 57
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.70 E-value=1.4e-17 Score=143.41 Aligned_cols=92 Identities=22% Similarity=0.360 Sum_probs=80.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEE----ecC------CCCHHHHHHHhhhcCC
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVIN----YDM------PGNIEMYTHRIGRTGR 71 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~----~d~------p~~~~~~~qr~GR~gR 71 (135)
...+++|||+|++++|..+++.|++|.++|||||+++++|+|+|.+++||. ||+ |.+..+|.||+|||||
T Consensus 378 ~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR 457 (1724)
T 4f92_B 378 PYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGR 457 (1724)
T ss_dssp TTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSC
T ss_pred hcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccC
Confidence 346889999999999999999999999999999999999999999999984 553 5689999999999999
Q ss_pred CC--CCceEEEEeecCChhHHHHH
Q 037139 72 AG--KTGVATTFLTFHDTDVFYDL 93 (135)
Q Consensus 72 ~~--~~g~~~~~~~~~~~~~~~~~ 93 (135)
.| ..|.+++++...+...+..+
T Consensus 458 ~g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 458 PQYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp TTTCSCEEEEEEEESTTCCHHHHH
T ss_pred CCCCCccEEEEEecchhHHHHHHH
Confidence 76 46899999988877665443
No 58
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.70 E-value=4.3e-17 Score=135.60 Aligned_cols=92 Identities=21% Similarity=0.342 Sum_probs=77.9
Q ss_pred ceEEEecCCCCHHHHHHHHHHHhcCCCcEEEe----cCCCcccccccCC-cEEEEecCC---------------------
Q 037139 3 YRVTTLHGGKSQEQREISLEGFRTKRYNVLVA----TDVAGRGIDIPDV-AHVINYDMP--------------------- 56 (135)
Q Consensus 3 ~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~----T~~~~~G~d~~~v-~~vi~~d~p--------------------- 56 (135)
+.+..+||+| ..++++|++|+++|||| |+++++|+|+|+| ++||++|+|
T Consensus 299 ~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~ 373 (1054)
T 1gku_B 299 FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLA 373 (1054)
T ss_dssp SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHH
T ss_pred cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHH
Confidence 5788999998 48899999999999999 9999999999996 999999999
Q ss_pred --------------------------------------------------CCHHHHHHHhhhcCCCCCCc--eEEEEeec
Q 037139 57 --------------------------------------------------GNIEMYTHRIGRTGRAGKTG--VATTFLTF 84 (135)
Q Consensus 57 --------------------------------------------------~~~~~~~qr~GR~gR~~~~g--~~~~~~~~ 84 (135)
.+..+|+||+||+||.|..| .+++++..
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~ 453 (1054)
T 1gku_B 374 YLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLE 453 (1054)
T ss_dssp TTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEe
Confidence 78999999999999976665 48888888
Q ss_pred CChhHHHHHHHHHhh
Q 037139 85 HDTDVFYDLKQMLIQ 99 (135)
Q Consensus 85 ~~~~~~~~~~~~~~~ 99 (135)
.+...++.+++.++.
T Consensus 454 ~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 454 DDSELLSAFIERAKL 468 (1054)
T ss_dssp SCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHhh
Confidence 888888999988875
No 59
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.70 E-value=4.1e-17 Score=135.09 Aligned_cols=100 Identities=21% Similarity=0.256 Sum_probs=76.7
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecC---------CCCHHHHHHHhhhcCCCC-
Q 037139 4 RVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDM---------PGNIEMYTHRIGRTGRAG- 73 (135)
Q Consensus 4 ~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~---------p~~~~~~~qr~GR~gR~~- 73 (135)
.+..+||+|++.+|+.+++.|++|+++|||||+++++|+|+|++.+ |+++. |.+..+|+||+|||||.|
T Consensus 401 gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~V-Vi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~ 479 (997)
T 4a4z_A 401 GIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTV-IFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGL 479 (997)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEE-EESCSEEEETTEEEECCHHHHHHHHGGGCCTTT
T ss_pred CeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceE-EEeccccccCccCCCCCHHHHhHHhcccccCCC
Confidence 5889999999999999999999999999999999999999999554 44444 449999999999999988
Q ss_pred -CCceEEEEeecCChhHHHHHHHHHhhCCCCCC
Q 037139 74 -KTGVATTFLTFHDTDVFYDLKQMLIQSNSPVP 105 (135)
Q Consensus 74 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (135)
..|.+++++... ......+++++.....++.
T Consensus 480 ~~~G~vi~l~~~~-~~~~~~~~~~i~~~~~~l~ 511 (997)
T 4a4z_A 480 DSTGTVIVMAYNS-PLSIATFKEVTMGVPTRLQ 511 (997)
T ss_dssp CSSEEEEEECCSS-CCCHHHHHHHHHSCCCCCC
T ss_pred CcceEEEEecCCC-cchHHHHHHHhcCCCcccc
Confidence 467777777422 2222334444444444433
No 60
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.70 E-value=4.5e-17 Score=125.57 Aligned_cols=99 Identities=20% Similarity=0.283 Sum_probs=76.9
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcC-CCc-EEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCce--
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTK-RYN-VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGV-- 77 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g-~~~-ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~-- 77 (135)
|+.+..+||++++++|.+++++|+++ +.+ +|++|+++++|+|+|.+++||++|+|+++..|.|++||++|.|+...
T Consensus 366 ~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~ 445 (500)
T 1z63_A 366 NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVI 445 (500)
T ss_dssp TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEE
T ss_pred CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeE
Confidence 67788999999999999999999998 566 78999999999999999999999999999999999999999987654
Q ss_pred EEEEeecCChhHHHHHHHHHhhCCC
Q 037139 78 ATTFLTFHDTDVFYDLKQMLIQSNS 102 (135)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (135)
++.++..... -+.+.+.+.....
T Consensus 446 v~~lv~~~ti--ee~i~~~~~~K~~ 468 (500)
T 1z63_A 446 VHKLISVGTL--EEKIDQLLAFKRS 468 (500)
T ss_dssp EEEEEETTSH--HHHTHHHHTTCSS
T ss_pred EEEEEeCCCH--HHHHHHHHHHHHH
Confidence 4555555432 2344444444443
No 61
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.69 E-value=8.7e-17 Score=122.63 Aligned_cols=76 Identities=17% Similarity=0.280 Sum_probs=66.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcE-----------------EEEecCCCCHHHHHH
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAH-----------------VINYDMPGNIEMYTH 64 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~-----------------vi~~d~p~~~~~~~q 64 (135)
|+.+..+||+ +|++++++|++|+++|||||+++++|+|+| +.. ||+++.|.+..+|+|
T Consensus 195 ~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Q 269 (431)
T 2v6i_A 195 GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQ 269 (431)
T ss_dssp TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHH
T ss_pred CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHH
Confidence 6789999997 578899999999999999999999999999 544 678899999999999
Q ss_pred HhhhcCCCCC-CceEEEEe
Q 037139 65 RIGRTGRAGK-TGVATTFL 82 (135)
Q Consensus 65 r~GR~gR~~~-~g~~~~~~ 82 (135)
|+||+||.|. .+.++++.
T Consensus 270 r~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 270 RRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HHTTSSCCTTCCCCEEEEC
T ss_pred hhhccCCCCCCCCeEEEEc
Confidence 9999999985 45555554
No 62
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.69 E-value=9.5e-17 Score=128.11 Aligned_cols=85 Identities=27% Similarity=0.380 Sum_probs=75.4
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCccccccc--------CCcEEEEecCCCCHHHHHHHhhhcCCC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIP--------DVAHVINYDMPGNIEMYTHRIGRTGRA 72 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~--------~v~~vi~~d~p~~~~~~~qr~GR~gR~ 72 (135)
.|+++.++||++.++++..+.++++.| .|+|||+++++|+|++ +..+||++++|.+...|.||+||+||.
T Consensus 497 ~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRq 574 (822)
T 3jux_A 497 KGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQ 574 (822)
T ss_dssp TTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCS
T ss_pred CCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccC
Confidence 378899999997777776666677666 6999999999999998 556999999999999999999999999
Q ss_pred CCCceEEEEeecCCh
Q 037139 73 GKTGVATTFLTFHDT 87 (135)
Q Consensus 73 ~~~g~~~~~~~~~~~ 87 (135)
|.+|.+++|++..+.
T Consensus 575 G~~G~a~~fvsleD~ 589 (822)
T 3jux_A 575 GDPGESIFFLSLEDD 589 (822)
T ss_dssp SCCCEEEEEEETTSH
T ss_pred CCCeeEEEEechhHH
Confidence 999999999998875
No 63
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.66 E-value=1.5e-16 Score=132.82 Aligned_cols=91 Identities=24% Similarity=0.429 Sum_probs=77.2
Q ss_pred CceEE-EecCCCCHHHHHHHHHHHhcCCCcEEEe----cCCCcccccccC-CcEEEEecCCC------------------
Q 037139 2 GYRVT-TLHGGKSQEQREISLEGFRTKRYNVLVA----TDVAGRGIDIPD-VAHVINYDMPG------------------ 57 (135)
Q Consensus 2 g~~v~-~~hg~~~~~~r~~~~~~f~~g~~~ilv~----T~~~~~G~d~~~-v~~vi~~d~p~------------------ 57 (135)
|+.+. .+||. |.+ +++|++|+++|||| |+++++|+|+|+ |++||+||+|.
T Consensus 333 g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l 406 (1104)
T 4ddu_A 333 KFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARV 406 (1104)
T ss_dssp TCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHH
T ss_pred CCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHH
Confidence 67887 89982 555 99999999999999 999999999999 99999999998
Q ss_pred ------------------------------------------------------CHHHHHHHhhhcCCCCCC--ceEEEE
Q 037139 58 ------------------------------------------------------NIEMYTHRIGRTGRAGKT--GVATTF 81 (135)
Q Consensus 58 ------------------------------------------------------~~~~~~qr~GR~gR~~~~--g~~~~~ 81 (135)
+..+|+||+||+||.+.. +.++++
T Consensus 407 ~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi 486 (1104)
T 4ddu_A 407 LKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSV 486 (1104)
T ss_dssp HHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEE
Confidence 788999999999996532 234444
Q ss_pred eecCChhHHHHHHHHHh
Q 037139 82 LTFHDTDVFYDLKQMLI 98 (135)
Q Consensus 82 ~~~~~~~~~~~~~~~~~ 98 (135)
+..++...++.+++.++
T Consensus 487 ~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 487 IFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp EECCCHHHHHHHHHHHH
T ss_pred EEEecHHHHHHHHHHHh
Confidence 55578888888888876
No 64
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.65 E-value=1.8e-16 Score=127.99 Aligned_cols=85 Identities=26% Similarity=0.383 Sum_probs=78.5
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCC---------------------------------
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV--------------------------------- 47 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v--------------------------------- 47 (135)
.|+++.++||++.++++..+.++|+.| .|+|||++++||+|++..
T Consensus 464 ~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 541 (853)
T 2fsf_A 464 AGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVL 541 (853)
T ss_dssp TTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHH
Confidence 478899999999999998889999988 699999999999999974
Q ss_pred ----cEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEEeecCCh
Q 037139 48 ----AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 87 (135)
Q Consensus 48 ----~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~~~~~~~ 87 (135)
.+||+++.|.+...|.||+||+||.|.+|.++.|++..+.
T Consensus 542 ~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 542 EAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred hcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5899999999999999999999999999999999987764
No 65
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.64 E-value=6.4e-17 Score=128.72 Aligned_cols=79 Identities=29% Similarity=0.387 Sum_probs=68.9
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEE----------Eec-----------CCCCH
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVI----------NYD-----------MPGNI 59 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi----------~~d-----------~p~~~ 59 (135)
.|+.+..+||+|++++ |+++..+|||||+++++|+|+| +++|| ||| .|.+.
T Consensus 419 ~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~ 490 (666)
T 3o8b_A 419 LGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDA 490 (666)
T ss_dssp TTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBH
T ss_pred CCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCH
Confidence 3688999999999875 4567779999999999999997 99988 677 89999
Q ss_pred HHHHHHhhhcCCCCCCceEEEEeecCChhH
Q 037139 60 EMYTHRIGRTGRAGKTGVATTFLTFHDTDV 89 (135)
Q Consensus 60 ~~~~qr~GR~gR~~~~g~~~~~~~~~~~~~ 89 (135)
++|+||+||+|| +..|. +.|+.+.+...
T Consensus 491 ~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 491 VSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp HHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred HHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 999999999999 88999 88888776544
No 66
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.64 E-value=1.4e-15 Score=121.08 Aligned_cols=84 Identities=18% Similarity=0.265 Sum_probs=75.9
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCc---EEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCCc--
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYN---VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTG-- 76 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~---ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g-- 76 (135)
|+.+..+||+++.++|.+++++|++++.. +|++|+++++|+|++.+++||+||+||++..+.|++||++|.|+..
T Consensus 440 g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v 519 (644)
T 1z3i_X 440 RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTC 519 (644)
T ss_dssp TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCce
Confidence 67889999999999999999999998764 8899999999999999999999999999999999999999998654
Q ss_pred eEEEEeecC
Q 037139 77 VATTFLTFH 85 (135)
Q Consensus 77 ~~~~~~~~~ 85 (135)
.++.++...
T Consensus 520 ~v~~lv~~~ 528 (644)
T 1z3i_X 520 YIYRLLSTG 528 (644)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEECC
Confidence 555566655
No 67
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.63 E-value=1.2e-15 Score=123.70 Aligned_cols=85 Identities=26% Similarity=0.309 Sum_probs=77.9
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCcccccccCC---------------------------------
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDV--------------------------------- 47 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v--------------------------------- 47 (135)
.|+++.++||++.++++..+.++|+.| .|+|||++++||+|++.+
T Consensus 483 ~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (922)
T 1nkt_A 483 RRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSEL 560 (922)
T ss_dssp TTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHH
T ss_pred CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHH
Confidence 478899999999888888888888888 699999999999999975
Q ss_pred -------------------cEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEEeecCCh
Q 037139 48 -------------------AHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 87 (135)
Q Consensus 48 -------------------~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~~~~~~~ 87 (135)
.+||+++.|.+...|.||+||+||.|.+|.++.|++..+.
T Consensus 561 ~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 561 PIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4899999999999999999999999999999999998765
No 68
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.59 E-value=2.5e-15 Score=118.21 Aligned_cols=69 Identities=16% Similarity=0.312 Sum_probs=63.6
Q ss_pred EEEecCCCCHHHHHHHHHHHhcCCCc---EEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCC
Q 037139 5 VTTLHGGKSQEQREISLEGFRTKRYN---VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGK 74 (135)
Q Consensus 5 v~~~hg~~~~~~r~~~~~~f~~g~~~---ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~ 74 (135)
+..+||+++ ++|++++++|++|+.+ |||||+++++|+|+|.+++||++++|++...|+||+||++|.+.
T Consensus 474 ~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 474 VARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp EEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred EEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 678899875 4799999999998877 88999999999999999999999999999999999999999764
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.57 E-value=6e-15 Score=119.90 Aligned_cols=84 Identities=24% Similarity=0.372 Sum_probs=75.6
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCc---EEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCC--c
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYN---VLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKT--G 76 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~---ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~--g 76 (135)
|+.+..+||+++.++|.+++++|++++.. +|++|.+++.|+|++.+++||+||+|+++..+.|++||+.|.|+. .
T Consensus 596 g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V 675 (800)
T 3mwy_W 596 GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHV 675 (800)
T ss_dssp TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceE
Confidence 67889999999999999999999997655 899999999999999999999999999999999999999998865 4
Q ss_pred eEEEEeecC
Q 037139 77 VATTFLTFH 85 (135)
Q Consensus 77 ~~~~~~~~~ 85 (135)
.++.++...
T Consensus 676 ~Vyrlv~~~ 684 (800)
T 3mwy_W 676 MVYRLVSKD 684 (800)
T ss_dssp EEEEEEETT
T ss_pred EEEEEecCC
Confidence 555666655
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.18 E-value=5.2e-11 Score=99.06 Aligned_cols=67 Identities=16% Similarity=0.183 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCCCcEEEecCCCcccccccCCcEEEEecCCCCHHHHHHHhhhcCCCCCC----ceEEEEee
Q 037139 16 QREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKT----GVATTFLT 83 (135)
Q Consensus 16 ~r~~~~~~f~~g~~~ilv~T~~~~~G~d~~~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~----g~~~~~~~ 83 (135)
.|..++++|++|+++|||+|+++.+|+|+|.+ .++++|.|.+...|+|++||++|.+.. |.++.|+.
T Consensus 637 ~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 637 YYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 48899999999999999999999999999999 678999999999999999999997643 66666654
No 71
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.80 E-value=4.5e-05 Score=59.57 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=27.4
Q ss_pred EecCCCCHHHHHHHHHHHhcCCCcEEE--ecCCCcccccccC----CcEEEEecCCC
Q 037139 7 TLHGGKSQEQREISLEGFRTKRYNVLV--ATDVAGRGIDIPD----VAHVINYDMPG 57 (135)
Q Consensus 7 ~~hg~~~~~~r~~~~~~f~~g~~~ilv--~T~~~~~G~d~~~----v~~vi~~d~p~ 57 (135)
..+|.. .++.++++.|+.+. .||+ ||..+.+|+|+|+ +++||++++|.
T Consensus 410 ~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf 463 (540)
T 2vl7_A 410 IEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLVLAGLPY 463 (540)
T ss_dssp EESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEEEESCCC
T ss_pred EecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEEEECCCC
Confidence 345543 46889999998864 6777 8899999999997 88999999885
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.42 E-value=0.00041 Score=57.27 Aligned_cols=39 Identities=23% Similarity=0.454 Sum_probs=34.3
Q ss_pred EEEEecCCCCHHHHHHHhhhcCCCCCCceEEEEeecCCh
Q 037139 49 HVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDT 87 (135)
Q Consensus 49 ~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~~~~~~~ 87 (135)
+||-...+.|...=.|..||+||.|.+|....+++-.|.
T Consensus 662 hVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeDd 700 (997)
T 2ipc_A 662 FIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDD 700 (997)
T ss_dssp CEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSSH
T ss_pred EEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECChH
Confidence 688888899999999999999999999998888876654
No 73
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.77 E-value=0.0065 Score=48.27 Aligned_cols=47 Identities=23% Similarity=0.359 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEecC--CCcccccccC--CcEEEEecCCC
Q 037139 10 GGKSQEQREISLEGFRTKRYNVLVATD--VAGRGIDIPD--VAHVINYDMPG 57 (135)
Q Consensus 10 g~~~~~~r~~~~~~f~~g~~~ilv~T~--~~~~G~d~~~--v~~vi~~d~p~ 57 (135)
-+++..++.+++++|+ ++-.||+++. .+.+|+|+|+ ..+||...+|.
T Consensus 477 q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPf 527 (620)
T 4a15_A 477 RGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPF 527 (620)
T ss_dssp TTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCC
T ss_pred CCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCC
Confidence 3456678999999999 8888999974 8999999986 67888887774
No 74
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.15 E-value=0.03 Score=45.68 Aligned_cols=53 Identities=19% Similarity=0.332 Sum_probs=45.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCC-cccccccCCcEEEEec
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVA-GRGIDIPDVAHVINYD 54 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~-~~G~d~~~v~~vi~~d 54 (135)
|+++..+||+++..++...++.+.+|+.+|+|+|... ...+++.++++||.-.
T Consensus 445 gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDE 498 (780)
T 1gm5_A 445 NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDE 498 (780)
T ss_dssp SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEES
T ss_pred CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEecc
Confidence 6889999999999999999999999999999999743 3457788888887544
No 75
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=94.56 E-value=0.32 Score=37.84 Aligned_cols=41 Identities=12% Similarity=0.162 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCCcEEEec--CCCccccccc-----CCcEEEEecCCC
Q 037139 17 REISLEGFRTKRYNVLVAT--DVAGRGIDIP-----DVAHVINYDMPG 57 (135)
Q Consensus 17 r~~~~~~f~~g~~~ilv~T--~~~~~G~d~~-----~v~~vi~~d~p~ 57 (135)
+.+.++.|+...-.||+|| ..+.+|+|+| .+++||...+|.
T Consensus 426 ~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 426 VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCC
T ss_pred HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEEEcCCC
Confidence 3557777854444799998 6899999999 367888777664
No 76
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=94.42 E-value=0.22 Score=36.57 Aligned_cols=81 Identities=6% Similarity=-0.011 Sum_probs=49.5
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCccccc-----ccCCcEEEEecCCCCHHH-HHHHhhhcCCC---
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGID-----IPDVAHVINYDMPGNIEM-YTHRIGRTGRA--- 72 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~~G~d-----~~~v~~vi~~d~p~~~~~-~~qr~GR~gR~--- 72 (135)
|+...-+-|.....+++ -.+....+.+.|...+.|+| +...+.||.||..|++.. .+|.+-|+.|.
T Consensus 149 ~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~g 223 (328)
T 3hgt_A 149 KVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKG 223 (328)
T ss_dssp SCEEEESSSCCC------------CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC-----
T ss_pred CCceEeCCCCchhhhhh-----cccCCceEEEEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccC
Confidence 45555566664333211 12455566666777777776 577899999999999877 48877777775
Q ss_pred -CCCceEEEEeecCCh
Q 037139 73 -GKTGVATTFLTFHDT 87 (135)
Q Consensus 73 -~~~g~~~~~~~~~~~ 87 (135)
++...++.++.....
T Consensus 224 q~k~v~V~RLvt~~Ti 239 (328)
T 3hgt_A 224 LERYAPIVRLVAINSI 239 (328)
T ss_dssp ----CCEEEEEETTSH
T ss_pred CCCcceEEEEeCCCCH
Confidence 245678888876544
No 77
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=90.15 E-value=0.4 Score=35.46 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=42.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCc----ccccccCCcEEEEec
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAG----RGIDIPDVAHVINYD 54 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~----~G~d~~~v~~vi~~d 54 (135)
|+++..+||+.+..++...++.+..++.+|+|+|.-.- .-++...+++||.-.
T Consensus 91 ~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDE 147 (414)
T 3oiy_A 91 KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDD 147 (414)
T ss_dssp SCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESC
T ss_pred CceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeC
Confidence 67899999999999999999999999999999996321 124455778777544
No 78
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.97 E-value=0.38 Score=40.91 Aligned_cols=51 Identities=14% Similarity=0.247 Sum_probs=43.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC-CCcccccccCCcEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-VAGRGIDIPDVAHVIN 52 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~-~~~~G~d~~~v~~vi~ 52 (135)
++++..+++..+..++...++.+..|+.+|+|+|. .+...+.+.++++||.
T Consensus 680 ~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 680 PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEE
Confidence 56789999999999999999999999999999995 4445577788887774
No 79
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=84.09 E-value=1 Score=38.24 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=42.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCCc----ccccccCCcEEEEec
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAG----RGIDIPDVAHVINYD 54 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~~----~G~d~~~v~~vi~~d 54 (135)
|+++..+||+++..++...++.+..|+.+|+|+|.-.- .-+++.++++||.-+
T Consensus 148 ~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDE 204 (1104)
T 4ddu_A 148 KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDD 204 (1104)
T ss_dssp TSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESC
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeC
Confidence 67899999999999999999999999999999996211 124567788887544
No 80
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=78.00 E-value=3.5 Score=31.80 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=32.9
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD 36 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~ 36 (135)
+|+.+..+||+.+..++..++..+..|..+|+++|.
T Consensus 88 ~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 88 NGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 367889999999999999999999999999999985
No 81
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=71.45 E-value=5.9 Score=31.16 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=31.7
Q ss_pred CceEEEecCCCCHHHHHHHHHHH--hcCCCcEEEecC
Q 037139 2 GYRVTTLHGGKSQEQREISLEGF--RTKRYNVLVATD 36 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f--~~g~~~ilv~T~ 36 (135)
|+.+..++|+++..++..++..+ ..+..+|+++|.
T Consensus 108 gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 108 GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 67889999999999999999988 578999999997
No 82
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=62.76 E-value=4.3 Score=20.47 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=17.3
Q ss_pred EecCCCCHHHHHHHHHHHhc
Q 037139 7 TLHGGKSQEQREISLEGFRT 26 (135)
Q Consensus 7 ~~hg~~~~~~r~~~~~~f~~ 26 (135)
..||+|+-.+++++.+.|-.
T Consensus 3 ~~hG~MD~~~hE~Ty~gFi~ 22 (43)
T 1qle_D 3 HKHGEMDIRHQQATFAGFIK 22 (43)
T ss_dssp CCTTCSCCHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHH
Confidence 36899999999999999853
No 83
>3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu genomics, center for structural genomics of infectious DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp}
Probab=52.13 E-value=13 Score=27.32 Aligned_cols=28 Identities=21% Similarity=0.101 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHhcCCCcEEEecCCCcc
Q 037139 13 SQEQREISLEGFRTKRYNVLVATDVAGR 40 (135)
Q Consensus 13 ~~~~r~~~~~~f~~g~~~ilv~T~~~~~ 40 (135)
++++|+..++.+++|.++++|+||-+.-
T Consensus 238 ~~~dr~aL~~al~dG~id~~iaTDHaPh 265 (359)
T 3pnu_A 238 RYEDKEALCELAFSGYEKVMFGSDSAPH 265 (359)
T ss_dssp CHHHHHHHHHHHHTTCTTEEECCCBCCC
T ss_pred CHHHHHHHHHHHhcCCCCEEEecCCCCC
Confidence 5789999999999999999999986543
No 84
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=51.14 E-value=28 Score=22.77 Aligned_cols=50 Identities=20% Similarity=0.343 Sum_probs=34.1
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC-----C-cccccccCCcEEEEec
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-----A-GRGIDIPDVAHVINYD 54 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~-~~G~d~~~v~~vi~~d 54 (135)
++++..++|+.+...+.. .+..+..+|+|+|.- + ...+++..++++|.-+
T Consensus 111 ~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 111 NVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp TCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred CceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcC
Confidence 578889999988766554 345577899999952 1 1235667777777543
No 85
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=49.06 E-value=31 Score=23.10 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=32.9
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC-----CCcc-cccccCCcEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-----VAGR-GIDIPDVAHVIN 52 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~~-G~d~~~v~~vi~ 52 (135)
|+.+..++|+.+...+...+.. ..+|+|+|. .+.. .+++.++.++|.
T Consensus 130 ~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 130 RLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp TCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred CceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 6778899999988776655542 478999995 2222 356777887774
No 86
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=46.40 E-value=14 Score=31.17 Aligned_cols=47 Identities=11% Similarity=0.323 Sum_probs=35.0
Q ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC-Ccccc-cccCCcEEEE
Q 037139 4 RVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-AGRGI-DIPDVAHVIN 52 (135)
Q Consensus 4 ~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~-~~~G~-d~~~v~~vi~ 52 (135)
.+..+||+.+..++.+..+.++. .+|+|+|.- +..-+ .+..+++||.
T Consensus 133 ~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 133 LIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp SEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred eEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 78999999999998888888877 899999962 11111 1556777774
No 87
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=45.47 E-value=37 Score=23.03 Aligned_cols=48 Identities=17% Similarity=0.367 Sum_probs=32.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC-----Cc--ccccccCCcEEEEe
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-----AG--RGIDIPDVAHVINY 53 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~--~G~d~~~v~~vi~~ 53 (135)
|+.+..++|+.+...+...+ .+..+|+|+|.- +. .++++..+++||.-
T Consensus 139 ~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViD 193 (249)
T 3ber_A 139 GVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMD 193 (249)
T ss_dssp TCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEEC
T ss_pred CeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEc
Confidence 56788999998876654433 246789999952 11 34567778877743
No 88
>2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A*
Probab=44.15 E-value=21 Score=25.78 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCCCcEEEecCCC
Q 037139 14 QEQREISLEGFRTKRYNVLVATDVA 38 (135)
Q Consensus 14 ~~~r~~~~~~f~~g~~~ilv~T~~~ 38 (135)
+++|+..++.+.+|.++++|+||-+
T Consensus 228 ~~d~~aL~~~l~~G~id~~i~SDha 252 (347)
T 2z26_A 228 NIHQQALRELVASGFNRVFLGTDSA 252 (347)
T ss_dssp HHHHHHHHHHHHTTCTTEEECCCBC
T ss_pred HHHHHHHHHHHhcCCCCeEEecCCC
Confidence 6789999999999999999999974
No 89
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=43.82 E-value=26 Score=29.04 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=24.1
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD 36 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~ 36 (135)
+|+++.++.|+++.+.|.... ..+|+|+|.
T Consensus 142 lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 142 LGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp TTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred cCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 478999999999987665543 278999996
No 90
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=43.63 E-value=27 Score=29.27 Aligned_cols=30 Identities=17% Similarity=0.391 Sum_probs=24.8
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD 36 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~ 36 (135)
+|+++.++.|++++++|..... .+|+++|.
T Consensus 179 lGLsv~~i~gg~~~~~r~~~y~------~DIvygTp 208 (922)
T 1nkt_A 179 LGLQVGVILATMTPDERRVAYN------ADITYGTN 208 (922)
T ss_dssp TTCCEEECCTTCCHHHHHHHHH------SSEEEEEH
T ss_pred cCCeEEEEeCCCCHHHHHHhcC------CCEEEECc
Confidence 5899999999999887766542 68999996
No 91
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=42.42 E-value=23 Score=29.83 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=25.0
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD 36 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~ 36 (135)
+|+++.++.|++++++|.... ..+|+++|.
T Consensus 147 lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 147 LGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp TTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred cCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 588999999999988777765 378999995
No 92
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=42.30 E-value=28 Score=28.84 Aligned_cols=30 Identities=17% Similarity=0.239 Sum_probs=24.5
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD 36 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~ 36 (135)
+|+++.++.|+++.++|.... ..+|+++|.
T Consensus 151 lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 151 LGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp TTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred cCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 588999999999988776643 268999996
No 93
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=39.09 E-value=37 Score=22.51 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=31.0
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCCC------cccccccCCcEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVA------GRGIDIPDVAHVIN 52 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~~------~~G~d~~~v~~vi~ 52 (135)
++++..++|+.+..++...+ ...+|+|+|.-. ...+++..++++|.
T Consensus 121 ~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 121 GLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp TCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred CceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 57788999998877665443 257899999621 12355667777764
No 94
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=37.20 E-value=63 Score=21.99 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=30.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC-----CCc--ccccccCCcEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-----VAG--RGIDIPDVAHVIN 52 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~--~G~d~~~v~~vi~ 52 (135)
+..+..++|+.+...+... +..+ .+|+|+|. .+. .++++..+++||.
T Consensus 154 ~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 154 VHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp CSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred CceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 4567888888876655433 3334 78999994 111 2456777887764
No 95
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=36.56 E-value=37 Score=22.51 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=27.5
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC-----Ccc--cccccCCcEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-----AGR--GIDIPDVAHVIN 52 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~~--G~d~~~v~~vi~ 52 (135)
++.+..++|+.+.......+ +..+|+|+|.- +.. .+++..+++||.
T Consensus 125 ~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 125 DFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp SCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred CeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 46788899987665544333 46789999952 111 245566776664
No 96
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=36.39 E-value=25 Score=23.20 Aligned_cols=47 Identities=13% Similarity=0.360 Sum_probs=24.9
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC-----C-cccccccCCcEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-----A-GRGIDIPDVAHVIN 52 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~-~~G~d~~~v~~vi~ 52 (135)
++.+..++|+.+...+...+ . ...+|+|+|.- + ...+++.++++||.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 121 GLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp TCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred CceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 56677888887655544332 2 34789999951 1 12355677777764
No 97
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=35.73 E-value=29 Score=23.19 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=22.7
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC-----CCcc-cccccCCcEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD-----VAGR-GIDIPDVAHVIN 52 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~-----~~~~-G~d~~~v~~vi~ 52 (135)
++.+..++|+.+... ..+.+..+..+|+|+|. .+.. .+++..+++||.
T Consensus 126 ~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 126 GATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp TCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred CceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 456667777765433 23445567788999993 2223 355666777764
No 98
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=32.42 E-value=73 Score=22.59 Aligned_cols=48 Identities=19% Similarity=0.352 Sum_probs=33.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC-C-----cccccccCCcEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-A-----GRGIDIPDVAHVIN 52 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~-~-----~~G~d~~~v~~vi~ 52 (135)
++++..++|+.+....... +..+..+|+|+|.- + ...+++..+++||.
T Consensus 105 ~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 105 NVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp TCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred CeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 5788999999987765544 44577899999952 1 12355677777774
No 99
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=32.01 E-value=9.1 Score=22.39 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=17.4
Q ss_pred CCCCHHHHHHHHHHHhcCCC
Q 037139 10 GGKSQEQREISLEGFRTKRY 29 (135)
Q Consensus 10 g~~~~~~r~~~~~~f~~g~~ 29 (135)
+.+++++|+++++.|..|--
T Consensus 59 ~~lt~~ek~elieeFn~G~e 78 (90)
T 1jr5_A 59 SELTQEDKKTLIDEFNEGFE 78 (90)
T ss_dssp HTCCHHHHHHHHTTSSSSST
T ss_pred HHCCHHHHHHHHHHHhccch
Confidence 57899999999999988854
No 100
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=30.58 E-value=18 Score=23.11 Aligned_cols=72 Identities=10% Similarity=0.107 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCCcEE-EecCCCcc--cccccC------CcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEEeecCChh
Q 037139 18 EISLEGFRTKRYNVL-VATDVAGR--GIDIPD------VAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTD 88 (135)
Q Consensus 18 ~~~~~~f~~g~~~il-v~T~~~~~--G~d~~~------v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~~~~~~~~ 88 (135)
.++.+.+++|+..++ +|.|+-.. -..+|. |.+++. .+..++-+.+|+- ....++.+..+++.+
T Consensus 56 kev~KaI~~gkakLVIIA~D~~p~e~~~~l~~lC~~~~VP~~~v----~sk~eLG~a~Gk~----~~vs~vaI~~~~~s~ 127 (144)
T 2jnb_A 56 NEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFV----RSKQALGRACGVS----RPVIACSVTIKEGSQ 127 (144)
T ss_dssp HHHHHHHHHTCEEEEEEETTCSCHHHHTTSCSSCGGGCCCCEEE----SCSHHHHHHHTCS----SCCSEEEEECCTTCT
T ss_pred HHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEE----CCHHHHHHHhCCC----CceEEEEEEeCCcHH
Confidence 467788888988865 67776542 222332 222222 1344444444442 222345556666655
Q ss_pred HHHHHHHHH
Q 037139 89 VFYDLKQML 97 (135)
Q Consensus 89 ~~~~~~~~~ 97 (135)
+.+.+.+..
T Consensus 128 i~~~~~~~~ 136 (144)
T 2jnb_A 128 LKQQIQSIQ 136 (144)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444433
No 101
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=30.18 E-value=68 Score=20.49 Aligned_cols=47 Identities=19% Similarity=0.291 Sum_probs=29.8
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC-----Ccc-cccccCCcEEEE
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-----AGR-GIDIPDVAHVIN 52 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~~-G~d~~~v~~vi~ 52 (135)
++.+..++|+.+..+....+ .+..+|+|+|.- +.. ..++..++++|.
T Consensus 100 ~~~~~~~~g~~~~~~~~~~~----~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 100 GAKVMATTGGTNLRDDIMRL----DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp SCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred CceEEEEeCCccHHHHHHhc----CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 56788889988766543322 356789999962 222 245667777764
No 102
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=30.10 E-value=37 Score=21.34 Aligned_cols=35 Identities=14% Similarity=0.052 Sum_probs=24.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 37 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~ 37 (135)
|+.|..+... +.+-+..+.+..++|+++++|-|..
T Consensus 49 Gl~v~~v~k~-~~eG~p~I~d~I~~geIdlVInt~~ 83 (134)
T 2xw6_A 49 GLTVEKLLSG-PLGGDQQMGARVAEGRILAVIFFRD 83 (134)
T ss_dssp CCCCEECSCG-GGTHHHHHHHHHHTTCEEEEEEECC
T ss_pred CceEEEEEec-CCCCcchHHHHHHCCCccEEEEccC
Confidence 4555555522 2134678999999999999988754
No 103
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=29.96 E-value=13 Score=16.43 Aligned_cols=8 Identities=63% Similarity=0.962 Sum_probs=5.9
Q ss_pred hhhcCCCC
Q 037139 66 IGRTGRAG 73 (135)
Q Consensus 66 ~GR~gR~~ 73 (135)
.||+||.+
T Consensus 9 ~~RtGRRN 16 (26)
T 1cmk_I 9 SGRTGRRN 16 (26)
T ss_pred cCcccccc
Confidence 48888864
No 104
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=29.50 E-value=50 Score=21.22 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=23.9
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 37 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~ 37 (135)
|+.|..+... +..-+..+.+..++|+++++|-|..
T Consensus 57 Gl~v~~v~k~-~eGG~p~I~d~I~~geIdlVInt~~ 91 (152)
T 1b93_A 57 GMNVNAMLSG-PMGGDQQVGALISEGKIDVLIFFWD 91 (152)
T ss_dssp CCCCEEECCG-GGTHHHHHHHHHHTTCCCEEEEECC
T ss_pred CceeEEEEec-CCCCCchHHHHHHCCCccEEEEcCC
Confidence 5556566532 2214578999999999998887753
No 105
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=27.00 E-value=1.1e+02 Score=18.62 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=26.3
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVL 32 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~il 32 (135)
+|..+.+++.+....-|+++.+.|++.-+++-
T Consensus 102 rgvevfvvynnkdddrrkeaqqefrsdgvdvr 133 (162)
T 2l82_A 102 RGVEVFVVYNNKDDDRRKEAQQEFRSDGVDVR 133 (162)
T ss_dssp TTCEEEEEEECSCHHHHHHHHHHHCCSSCEEE
T ss_pred cCcEEEEEecCCCchhHHHHHHHhhhcCceee
Confidence 47788889999999999999999987755544
No 106
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=26.71 E-value=78 Score=21.13 Aligned_cols=48 Identities=17% Similarity=0.138 Sum_probs=30.4
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC-----Cc-ccccccCCcEEEEe
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV-----AG-RGIDIPDVAHVINY 53 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~-----~~-~G~d~~~v~~vi~~ 53 (135)
++.+..++|+.+...+...+ ....+|+|+|.- +. ..+++..++++|.-
T Consensus 128 ~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViD 181 (253)
T 1wrb_A 128 PLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLD 181 (253)
T ss_dssp SCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEE
T ss_pred CceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEe
Confidence 46678888888766544332 346789999962 11 23566777777743
No 107
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=25.24 E-value=89 Score=17.45 Aligned_cols=22 Identities=18% Similarity=0.024 Sum_probs=18.7
Q ss_pred EEEecCCCCHHHHHHHHHHHhc
Q 037139 5 VTTLHGGKSQEQREISLEGFRT 26 (135)
Q Consensus 5 v~~~hg~~~~~~r~~~~~~f~~ 26 (135)
+.+++..++.++++.++++|+.
T Consensus 49 m~Il~P~l~ee~~~~~vek~~~ 70 (77)
T 3zzp_A 49 NIVLNPNLDQSQLQNEKEIIQR 70 (77)
T ss_dssp EEEECTTCCHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999863
No 108
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=23.15 E-value=65 Score=21.32 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=24.3
Q ss_pred CceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecCC
Q 037139 2 GYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDV 37 (135)
Q Consensus 2 g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~~ 37 (135)
|+.|..+... +..-+..+.+.+++|+++++|-|..
T Consensus 73 Gl~v~~v~k~-~eGG~pqI~d~I~~geIdlVInt~d 107 (178)
T 1vmd_A 73 GLKVHRLKSG-PLGGDQQIGAMIAEGKIDVLIFFWD 107 (178)
T ss_dssp CCCCEECSCG-GGTHHHHHHHHHHTTSCCEEEEECC
T ss_pred CceeEEEeec-CCCCCchHHHHHHCCCccEEEEccC
Confidence 5555555522 2214678999999999999988754
No 109
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=21.77 E-value=1.5e+02 Score=18.29 Aligned_cols=72 Identities=10% Similarity=0.156 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCCcEE-EecCCCcccc--ccc------CCcEEEEecCCCCHHHHHHHhhhcCCCCCCceEEEEeecCChh
Q 037139 18 EISLEGFRTKRYNVL-VATDVAGRGI--DIP------DVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTFHDTD 88 (135)
Q Consensus 18 ~~~~~~f~~g~~~il-v~T~~~~~G~--d~~------~v~~vi~~d~p~~~~~~~qr~GR~gR~~~~g~~~~~~~~~~~~ 88 (135)
.++.+.+++|+..++ +|.|+-..++ .++ ++.++.. .+..++-+.+|+- ....++.+..+.+.+
T Consensus 47 ~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v----~sk~eLG~a~G~~----~~v~~vaI~d~~~s~ 118 (135)
T 2aif_A 47 NEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFV----RSKVALGRACGVS----RPVIAAAITSKDGSS 118 (135)
T ss_dssp HHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEE----SCHHHHHHHTTCS----SCCSEEEEECCTTCT
T ss_pred HHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEE----CCHHHHHHHhCCC----CcEEEEEEEcCCcHH
Confidence 467788888888855 6788766554 111 2333322 3445554444443 233356666666665
Q ss_pred HHHHHHHHH
Q 037139 89 VFYDLKQML 97 (135)
Q Consensus 89 ~~~~~~~~~ 97 (135)
....+.+..
T Consensus 119 i~~~~~~~~ 127 (135)
T 2aif_A 119 LSSQITELK 127 (135)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444443
No 110
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=20.83 E-value=2e+02 Score=19.68 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=25.1
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCcEEEecC
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATD 36 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~g~~~ilv~T~ 36 (135)
+|+.+.+....-+..+....++.+.+..++.+|.+.
T Consensus 36 ~g~~~~~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~ 71 (296)
T 2hqb_A 36 LDVDVVLEEGVNSEQKAHRRIKELVDGGVNLIFGHG 71 (296)
T ss_dssp SCCEEEEECCCCSHHHHHHHHHHHHHTTCCEEEECS
T ss_pred hCCeEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEcC
Confidence 366666555444555566788899888899888764
No 111
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=20.68 E-value=1.5e+02 Score=19.07 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=20.5
Q ss_pred CCceEEEecCCCCHHHHHHHHHHHhc
Q 037139 1 LGYRVTTLHGGKSQEQREISLEGFRT 26 (135)
Q Consensus 1 ~g~~v~~~hg~~~~~~r~~~~~~f~~ 26 (135)
+||.| .+|.+++.++-.+.++.|..
T Consensus 70 LgF~V-~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 70 LGYDV-HVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp TTEEE-EEEESCCHHHHHHHHHHHHT
T ss_pred CCCEE-EEeeCCCHHHHHHHHHHhhh
Confidence 57777 45678999999999999976
Done!