BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037140
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QOU|A Chain A, Cen (Centroradialis) Protein From Antirrhinum
pdb|1QOU|B Chain B, Cen (Centroradialis) Protein From Antirrhinum
Length = 181
Score = 182 bits (462), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 94/181 (51%), Positives = 121/181 (66%), Gaps = 9/181 (4%)
Query: 1 MAASV--DPLVVGRVIGDVVDMFVPSVGMSVYYGS----KHVTNGCDVKPSMATSPPKLN 54
MAA V DPLV+GRVIGDVVD F +V MSV Y S KHV NG ++ PS TS P++
Sbjct: 1 MAAKVSSDPLVIGRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVE 60
Query: 55 ITGHS-DELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPV 113
+ G +TL+MTDPD P PS+P +RE +HWIV DIPG T+ + G E++ Y PRP +
Sbjct: 61 VHGGDMRSFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNI 120
Query: 114 GIHRYIMVLFQQKAPLGLVEQPPT--RANFNTRLFAGNLDLGLPVATIYFNCQKEPASRR 171
GIHR++ +LF+QK + PP R FNTR F +LGLPVA ++FNCQ+E A+RR
Sbjct: 121 GIHRFVFLLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVAAVFFNCQRETAARR 180
Query: 172 R 172
R
Sbjct: 181 R 181
>pdb|3AXY|A Chain A, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|B Chain B, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|G Chain G, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|H Chain H, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
Length = 170
Score = 177 bits (450), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/164 (54%), Positives = 114/164 (69%), Gaps = 6/164 (3%)
Query: 6 DPLVVGRVIGDVVDMFVPSVGMSVYYGSKHVTNGCDVKPSMATSPPKLNITGHS-DELYT 64
DPLVVGRV+GDV+D FV S + V YGSK V+NG ++KPSM T P++ + G+ YT
Sbjct: 9 DPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGLELKPSMVTHQPRVEVGGNDMRTFYT 68
Query: 65 LVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQ 124
LVM DPDAPSPS+P +RE++HW+V DIPG T + G E++ Y PRP +GIHR + VLFQ
Sbjct: 69 LVMVDPDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMSYESPRPTMGIHRLVFVLFQ 128
Query: 125 QKAPLG--LVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKE 166
Q LG V P R NFNT+ FA +LG PVA +YFN Q+E
Sbjct: 129 Q---LGRQTVYAPGWRQNFNTKDFAELYNLGSPVAAVYFNSQRE 169
>pdb|1WKO|A Chain A, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
pdb|1WKO|B Chain B, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
Length = 180
Score = 177 bits (449), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 116/169 (68%), Gaps = 1/169 (0%)
Query: 5 VDPLVVGRVIGDVVDMFVPSVGMSVYYGSKHVTNGCDVKPSMATSPPKLNITGHS-DELY 63
++PL++GRV+GDV+D F P+ M+V Y K V+NG ++ PS +S P++ I G +
Sbjct: 12 IEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLRSFF 71
Query: 64 TLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLF 123
TLVM DPD P PS+P ++E +HWIV +IPG T+ G E++ Y PRP +GIHR++ VLF
Sbjct: 72 TLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFVFVLF 131
Query: 124 QQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKEPASRRR 172
+QK + P+R +FNTR FA DLGLPVA ++FN Q+E A+R+R
Sbjct: 132 RQKQRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 180
>pdb|1WKP|A Chain A, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|B Chain B, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|C Chain C, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|D Chain D, Flowering Locus T (Ft) From Arabidopsis Thaliana
Length = 171
Score = 159 bits (402), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 105/164 (64%), Gaps = 6/164 (3%)
Query: 6 DPLVVGRVIGDVVDMFVPSVGMSVYYGSKHVTNGCDVKPSMATSPPKLNITGHS-DELYT 64
DPL+V RV+GDV+D F S+ + V YG + VTNG +++PS + P++ I G YT
Sbjct: 10 DPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLNLRPSQVQNKPRVEIGGEDLRNFYT 69
Query: 65 LVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQ 124
LVM DPD PSPS P +RE++HW+V DIP T G EI+ Y P P GIHR + +LF+
Sbjct: 70 LVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVSYENPSPTAGIHRVVFILFR 129
Query: 125 QKAPLG--LVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQKE 166
Q LG V P R NFNTR FA +LGLPVA +++N Q+E
Sbjct: 130 Q---LGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNSQRE 170
>pdb|2JYZ|A Chain A, Cg7054 Solution Structure
Length = 179
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 18/166 (10%)
Query: 13 VIGDVVDMFVPSVGMSVYYGSK-HVTNGCDVKPSMATSPPKLNITG--HSDELYTLVMTD 69
++ DV+D VP+ + V YG V G ++ P+ P ++ +G L TL+M D
Sbjct: 4 IVPDVLDA-VPAGTIKVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLEGKSNLLTLLMVD 62
Query: 70 PDAPSPSEPRMREWVHWIVVDIPGGT-NPAQGMEILPYMGPRPP--VGIHRYIMVLFQQK 126
PDAP+ +P+ RE +HW VV+IPG NP+ G + Y+G PP G+HRYI +L++Q+
Sbjct: 63 PDAPTRQDPKYREILHWSVVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLLYRQE 122
Query: 127 APLGLVEQPPT--------RANFNTRLFAGNLDLGLPVATIYFNCQ 164
+E+ PT R NFN R FA LG P+A Y+ Q
Sbjct: 123 NK---IEETPTISNTTRTGRLNFNARDFAAKHGLGEPIAANYYQAQ 165
>pdb|2IQY|A Chain A, Rat Phosphatidylethanolamine-Binding Protein
Length = 190
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 9/112 (8%)
Query: 61 ELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPP--VGIHRY 118
+LYTLV+TDPDAPS +P+ REW H++VV++ G + + G + Y+G PP G+HRY
Sbjct: 65 KLYTLVLTDPDAPSRKDPKFREWHHFLVVNMK-GNDISSGTVLSEYVGSGPPKDTGLHRY 123
Query: 119 IMVLFQQKAPLGLVE------QPPTRANFNTRLFAGNLDLGLPVATIYFNCQ 164
+ ++++Q+ PL E R F F LG PVA F +
Sbjct: 124 VWLVYEQEQPLNCDEPILSNKSGDNRGKFKVESFRKKYHLGAPVAGTCFQAE 175
>pdb|2IQX|A Chain A, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|B Chain B, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|C Chain C, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
Length = 187
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 9/112 (8%)
Query: 61 ELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPP--VGIHRY 118
+LYTLV+TDPDAPS +P+ REW H++VV++ G + + G + Y+G PP G+HRY
Sbjct: 62 KLYTLVLTDPDAPSRKDPKFREWHHFLVVNMK-GNDISSGTVLSEYVGSGPPKDTGLHRY 120
Query: 119 IMVLFQQKAPLGLVE------QPPTRANFNTRLFAGNLDLGLPVATIYFNCQ 164
+ ++++Q+ PL E R F F LG PVA F +
Sbjct: 121 VWLVYEQEQPLNCDEPILSNKSGDNRGKFKVEEFRKKYHLGAPVAGTCFQAE 172
>pdb|1B7A|A Chain A, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
pdb|1B7A|B Chain B, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
Length = 186
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 9/112 (8%)
Query: 61 ELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPP--VGIHRY 118
+LYTLV+TDPDAPS +P+ REW H++VV++ G N + G + Y+G PP G+HRY
Sbjct: 61 KLYTLVLTDPDAPSRKDPKYREWHHFLVVNMK-GNNISSGTVLSDYVGSGPPKGTGLHRY 119
Query: 119 IMVLFQQKAPLGLVE------QPPTRANFNTRLFAGNLDLGLPVATIYFNCQ 164
+ ++++Q+ PL E R F F +LG PVA + +
Sbjct: 120 VWLVYEQEGPLKCDEPILSNRSGDHRGKFKVASFRKKYELGAPVAGTCYQAE 171
>pdb|1A44|A Chain A, Phosphatidylethanolamine Binding Protein From Calf Brain
Length = 185
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 9/112 (8%)
Query: 61 ELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPP--VGIHRY 118
+LYTLV+TDPDAPS +P+ REW H++VV++ G N + G + Y+G PP G+HRY
Sbjct: 61 KLYTLVLTDPDAPSRKDPKYREWHHFLVVNMK-GNNISSGTVLSDYVGSGPPKGTGLHRY 119
Query: 119 IMVLFQQKAPLGLVE------QPPTRANFNTRLFAGNLDLGLPVATIYFNCQ 164
+ ++++Q+ PL E R F F +LG PVA + +
Sbjct: 120 VWLVYEQEGPLKCDEPILSNRSGDHRGKFKVASFRKKYELGAPVAGTCYQAE 171
>pdb|1KN3|A Chain A, Murine Pebp-2 (Phosphatidylethanolamine-Binding Protein-2)
Length = 183
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 62/112 (55%), Gaps = 9/112 (8%)
Query: 61 ELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPP--VGIHRY 118
+LYTL++TDPDAPS +P REW H++VV++ G + + G + Y+G PP G+HRY
Sbjct: 58 KLYTLILTDPDAPSRKKPVYREWHHFLVVNMK-GNDISSGNVLSDYVGSGPPKGTGLHRY 116
Query: 119 IMVLFQQKAPLGLVEQPPT------RANFNTRLFAGNLDLGLPVATIYFNCQ 164
+ +++QQ PL E T R F T F LG PVA + +
Sbjct: 117 VWLVYQQDKPLRCDEPILTNRSGDHRGKFKTAAFRKKYHLGAPVAGTCYQAE 168
>pdb|1BD9|A Chain A, Human Phosphatidylethanolamine Binding Protein
pdb|1BD9|B Chain B, Human Phosphatidylethanolamine Binding Protein
pdb|1BEH|A Chain A, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|1BEH|B Chain B, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|2QYQ|A Chain A, Human Raf Kinase Inhibitor Protein (Rkip) In Complex With
O- Phosphotyrosine
pdb|2L7W|A Chain A, Solution Structure Of The Human Raf-1 Kinase Inhibitor
Protein
Length = 187
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 9/114 (7%)
Query: 59 SDELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPP--VGIH 116
S +LYTLV+TDPDAPS +P+ REW H++VV++ G + + G + Y+G PP G+H
Sbjct: 60 SGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNMK-GNDISSGTVLSDYVGSGPPKGTGLH 118
Query: 117 RYIMVLFQQKAPLGLVE------QPPTRANFNTRLFAGNLDLGLPVATIYFNCQ 164
RY+ ++++Q PL E R F F +L PVA + +
Sbjct: 119 RYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAE 172
>pdb|1WPX|B Chain B, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
Length = 220
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 71/161 (44%), Gaps = 38/161 (23%)
Query: 3 ASVDPLVVGRVIGDVVD--MFVPSVGMSVYYGSKH-VTNGCDVKPSMATSPPKLNITGHS 59
AS+D ++ DV+ F PS ++V Y S V G + A S P+ T +
Sbjct: 11 ASIDSYKKHGILEDVIHDTSFQPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNK 70
Query: 60 ----------------DELYTLVMTDPDAPSPSEPRMREWVHWIVVDIP----------G 93
D+L+TLVMTDPDAPS ++ + E+ H + D+ G
Sbjct: 71 QMQKSVPQANAYVPQDDDLFTLVMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSG 130
Query: 94 GT-------NPAQGMEILPYMGPRPPVGI--HRYIMVLFQQ 125
T N ++ YMGP PP G HRY+ +L++Q
Sbjct: 131 ATEFFASEFNTKGSNTLIEYMGPAPPKGSGPHRYVFLLYKQ 171
>pdb|2GZQ|A Chain A, Phosphatidylethanolamine-Binding Protein From Plasmodium
Vivax
Length = 200
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 18/123 (14%)
Query: 59 SDELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPG-----GTNPAQGMEILPYMGP--RP 111
D Y L DPD PS P R++VHW V I GT+ + +LPY+GP +
Sbjct: 75 EDYCYILFXIDPDFPSRRRPDGRDYVHWAVSGIKSKELVKGTD-KNCITLLPYVGPSIKK 133
Query: 112 PVGIHR--YIMVLFQQK-------APLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFN 162
G+HR +I+ L +++ PL E TR FN A N+ + FN
Sbjct: 134 GTGLHRISFILSLVKEENKGNVTGVPLYRGEHYITRVKFNNCQSAYNVIQXNDXKIVGFN 193
Query: 163 -CQ 164
CQ
Sbjct: 194 WCQ 196
>pdb|2R77|A Chain A, Crystal Structure Of Phosphatidylethanolamine-Binding
Protein, Pfl0955c, From Plasmodium Falciparum
Length = 205
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 63 YTLVMTDPDAPSPSEPRMREWVHWIVVDIP-----GGTNPAQGMEILPYMGP--RPPVGI 115
+ L M DPD PS P +E++HW+V I GT + ILPY+GP + G+
Sbjct: 86 FVLFMVDPDYPSRLRPDGKEYIHWVVSGIKTKELIKGTQ-KNCVTILPYVGPSIKKGTGL 144
Query: 116 HR--YIMVLFQQKAPLGLV-------EQPPTRANFNTRLFAGNLDLGLPVATIYFN-CQK 165
HR +I+ L +++ + E+ TR FN N+ + + +N CQ
Sbjct: 145 HRISFIISLIKEEDKDNITGLPHYKGEKYITRVKFNNYESVHNIAQINNMKIVGYNWCQI 204
Query: 166 E 166
E
Sbjct: 205 E 205
>pdb|3N08|A Chain A, Crystal Structure Of A Putative
Phosphatidylethanolamine-Binding Protein (Pebp) Homolog
Ct736 From Chlamydia Trachomatis DUW-3CX
pdb|3N08|B Chain B, Crystal Structure Of A Putative
Phosphatidylethanolamine-Binding Protein (Pebp) Homolog
Ct736 From Chlamydia Trachomatis DUW-3CX
Length = 153
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 19/74 (25%)
Query: 65 LVMTDPDAPSPSEPRMRE---WVHWIVVDI-PGGTNPAQGMEILPYMG-----------P 109
L++ DPD P P +RE W+HWIV ++ P +N A+G +I G P
Sbjct: 46 LIVEDPDVP----PSVREDGLWIHWIVYNLSPVVSNLAEGAQIFAVQGLNTAGEIGYCPP 101
Query: 110 RPPVGIHRYIMVLF 123
PP HRY +
Sbjct: 102 CPPDAKHRYYFYAY 115
>pdb|1VI3|A Chain A, Crystal Structure Of An Hypothetical Protein
Length = 170
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 25/80 (31%)
Query: 63 YTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGT-----NPAQGMEILP------------ 105
+ + DPDAP+ S W HW+VV++P T G+ P
Sbjct: 48 FVVTCYDPDAPTGSG-----WWHWVVVNLPADTRVLPQGFGSGLVAXPDGVLQTRTDFGK 102
Query: 106 --YMGPRPPVG-IHRYIMVL 122
Y G PP G HRYI +
Sbjct: 103 TGYDGAAPPKGETHRYIFTV 122
>pdb|1FJJ|A Chain A, Crystal Structure Of E.Coli Ybhb Protein, A New Member Of
The Mammalian Pebp Family
Length = 159
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 25/80 (31%)
Query: 63 YTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNP-----AQGMEILP------------ 105
+ + DPDAP+ S W HW+VV++P T G+ P
Sbjct: 47 FVVTCYDPDAPTGSG-----WWHWVVVNLPADTRVLPQGFGSGLVAXPDGVLQTRTDFGK 101
Query: 106 --YMGPRPPVG-IHRYIMVL 122
Y G PP G HRYI +
Sbjct: 102 TGYDGAAPPKGETHRYIFTV 121
>pdb|1FUX|A Chain A, Crystal Structure Of E.Coli Ybcl, A New Member Of The
Mammalian Pebp Family
pdb|1FUX|B Chain B, Crystal Structure Of E.Coli Ybcl, A New Member Of The
Mammalian Pebp Family
Length = 166
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 39 GCDVKPSMATSPPKLNITG--HSDELYTLVMTDPDAPSPSEPRMREWVHWIVVDIP 92
GC+ + P L +G + + + + DPDAP+ S W HW VV+IP
Sbjct: 26 GCE----GGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTGSG-----WWHWTVVNIP 72
>pdb|1HBX|G Chain G, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|H Chain H, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
Length = 157
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 4 SVDPLVVGRVIGDVVDMFVPSVGMSVYYGSKHVTNGCDVKP 44
++DP+ VGR+ GD + V S SK V NG KP
Sbjct: 93 NMDPMTVGRIEGDCESLNFSEVSSS----SKDVENGGKDKP 129
>pdb|1PB7|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Glycine At 1.35 Angstroms Resolution
pdb|1PBQ|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1PBQ|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1Y1M|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1M|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1Z|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Acbc
pdb|1Y20|A Chain A, Crystal Structure Of The Nr1 Ligand-binding Core In
Complex With Acpc
pdb|2A5T|A Chain A, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 292
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 42 VKPSMATSPPKLNITGHSDELYTLVMTDPDAPSPSEPR 79
VKP+M+ K T + D + ++ T P+ SP PR
Sbjct: 19 VKPTMSDGTCKEEFTVNGDPVKKVICTGPNDTSPGSPR 56
>pdb|1PB8|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Serine At 1.45 Angstroms Resolution
pdb|1PB9|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Cycloserine At 1.60 Angstroms Resolution
Length = 292
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 42 VKPSMATSPPKLNITGHSDELYTLVMTDPDAPSPSEPR 79
VKP+M+ K T + D + ++ T P+ SP PR
Sbjct: 19 VKPTMSDGTCKEEFTVNGDPVKKVICTGPNDTSPGSPR 56
>pdb|1KVP|A Chain A, Structural Analysis Of The Spiroplasma Virus, Spv4,
Implications For Evolutionary Variation To Obtain Host
Diversity Among The Microviridae, Electron Microscopy,
Alpha Carbons Only
Length = 497
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 2 AASVDPLVVGRVIGDVVDMFVPSVGMSVYYGS---KHVTNGCDVKPSMATSPPKLNITGH 58
A + PL G I VD+F V YG K + +G + AT P +N TG+
Sbjct: 48 ALRLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVN-----ATPLPTVNTTGY 102
Query: 59 SDELYTLVMTDPD 71
D L +PD
Sbjct: 103 IDHAAFLGTINPD 115
>pdb|1CD3|F Chain F, Procapsid Of Bacteriophage Phix174
Length = 426
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 2 AASVDPLVVGRVIGDVVDMFVPSVGMSVYYGS---KHVTNGCDVKPSMATSPPKLNITGH 58
A + PL G I VD+F V YG K + +G + AT P +N TG+
Sbjct: 48 ALRLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVN-----ATPLPTVNTTGY 102
Query: 59 SDELYTLVMTDPDA 72
D L +PD
Sbjct: 103 IDHAAFLGTINPDT 116
>pdb|2BPA|1 Chain 1, Atomic Structure Of Single-Stranded Dna Bacteriophage
Phix174 And Its Functional Implications
pdb|1AL0|F Chain F, Procapsid Of Bacteriophage Phix174
Length = 426
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 2 AASVDPLVVGRVIGDVVDMFVPSVGMSVYYGS---KHVTNGCDVKPSMATSPPKLNITGH 58
A + PL G I VD+F V YG K + +G + AT P +N TG+
Sbjct: 48 ALRLSPLRRGLAIDSTVDIFTFYVPHRHVYGEQWIKFMKDGVN-----ATPLPTVNTTGY 102
Query: 59 SDELYTLVMTDPDA 72
D L +PD
Sbjct: 103 IDHAAFLGTINPDT 116
>pdb|3SXN|A Chain A, Mycobacterium Tuberculosis Eis Protein Initiates
Modulation Of Host Immune Responses By Acetylation Of
Dusp16MKP-7
pdb|3SXN|B Chain B, Mycobacterium Tuberculosis Eis Protein Initiates
Modulation Of Host Immune Responses By Acetylation Of
Dusp16MKP-7
pdb|3SXN|C Chain C, Mycobacterium Tuberculosis Eis Protein Initiates
Modulation Of Host Immune Responses By Acetylation Of
Dusp16MKP-7
pdb|3SXN|D Chain D, Mycobacterium Tuberculosis Eis Protein Initiates
Modulation Of Host Immune Responses By Acetylation Of
Dusp16MKP-7
pdb|3SXN|E Chain E, Mycobacterium Tuberculosis Eis Protein Initiates
Modulation Of Host Immune Responses By Acetylation Of
Dusp16MKP-7
pdb|3SXN|F Chain F, Mycobacterium Tuberculosis Eis Protein Initiates
Modulation Of Host Immune Responses By Acetylation Of
Dusp16MKP-7
Length = 422
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 44 PSMATSPPKLNITGHSDELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNPAQGMEI 103
P + T P + +T +D+L+ +M + P+ E R + +V+D+ G G
Sbjct: 294 PYLLTDPRQAQVTASADDLWIRIM---NVPAALEARRYQADLDVVLDVADGFRSDGGRFA 350
Query: 104 LPYMGPR 110
L G R
Sbjct: 351 LQISGGR 357
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,866,763
Number of Sequences: 62578
Number of extensions: 255379
Number of successful extensions: 386
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 30
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)