Query 037140
Match_columns 172
No_of_seqs 132 out of 1238
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 09:03:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00169 CETS family protein; 100.0 1.3E-54 2.9E-59 335.7 18.0 171 1-172 2-173 (175)
2 KOG3346 Phosphatidylethanolami 100.0 3.6E-52 7.7E-57 322.3 13.4 171 1-171 1-177 (185)
3 cd00866 PEBP_euk PhosphatidylE 100.0 4.4E-38 9.5E-43 238.7 15.6 138 26-163 2-154 (154)
4 PF01161 PBP: Phosphatidyletha 100.0 2.5E-29 5.4E-34 189.0 10.5 129 25-162 2-146 (146)
5 cd00457 PEBP PhosphatidylEthan 99.9 7.9E-25 1.7E-29 167.4 12.4 123 35-163 6-159 (159)
6 cd00865 PEBP_bact_arch Phospha 99.8 3.2E-18 6.9E-23 129.6 11.5 92 49-151 26-137 (150)
7 PRK10257 putative kinase inhib 99.8 2E-17 4.3E-22 126.2 14.4 75 50-129 31-128 (158)
8 COG1881 Phospholipid-binding p 99.7 5.1E-18 1.1E-22 131.1 8.9 114 33-153 27-163 (174)
9 TIGR00481 Raf kinase inhibitor 99.7 5.8E-17 1.3E-21 121.7 11.1 91 50-151 15-128 (141)
10 PRK09818 putative kinase inhib 99.7 3.5E-17 7.6E-22 127.5 9.4 95 27-128 22-149 (183)
11 KOG3586 TBX1 and related T-box 26.5 85 0.0018 27.6 3.5 51 37-90 95-153 (437)
12 PRK04243 50S ribosomal protein 21.0 86 0.0019 24.8 2.4 27 60-89 127-153 (196)
No 1
>PLN00169 CETS family protein; Provisional
Probab=100.00 E-value=1.3e-54 Score=335.65 Aligned_cols=171 Identities=51% Similarity=0.924 Sum_probs=160.4
Q ss_pred CcccCCccccCCcccccCCCCCCCeeEEEEECCeeecCCCccCCCCCCCCCeEEEec-CCCcceEEEEeCCCCCCCCCCC
Q 037140 1 MAASVDPLVVGRVIGDVVDMFVPSVGMSVYYGSKHVTNGCDVKPSMATSPPKLNITG-HSDELYTLVMTDPDAPSPSEPR 79 (172)
Q Consensus 1 ~~~~~~~l~~~~iipdvl~~f~p~~~L~V~y~~~~v~~G~~l~~~~t~~~P~v~~~~-~~~~~ytlim~DpD~p~~~~~~ 79 (172)
|+.++++|++++||||||+.|.|+..|.|+|++..|.+|+.|++++++++|+|+|++ +.+++|||+|+|||+|++++++
T Consensus 2 ~~~~~~~l~~~~iipdvid~f~P~~~L~V~y~s~~V~~G~~l~p~~t~~~P~i~~~~~~~~~~ytlim~DpDaP~~~~~~ 81 (175)
T PLN00169 2 SPRDRDPLVVGRVVGDVLDPFTRSISLRVTYGSREVNNGCELKPSQVVNQPRVDIGGEDLRTFYTLVMVDPDAPSPSNPN 81 (175)
T ss_pred CcccccchhhCCcCCcccCCcCCceEEEEEECCcCcCCcCCCCHHHhccCCEEEEccCCCCceeEEEEECCCCCCCCCCC
Confidence 788999999999999999999999999999999999999999999999999999997 6679999999999999999999
Q ss_pred CcceEEEEEEeeCCCCCCCCCcccccccCCCCCCCCceEEEEEEeecCCCCCccCCCCCCCcCHHHHHHHhCCCCceEEE
Q 037140 80 MREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATI 159 (172)
Q Consensus 80 ~~~~lHwlv~ni~~~~~~~~g~~~~~Y~~P~P~~G~HRY~fll~~q~~~~~~~~~~~~R~~Fn~~~f~~~~~L~~pva~~ 159 (172)
+++|+||++.||+++.....|+++++|+||+|++|.|||+|+||+|++.+ ....+..|.+||+++|++++||+.|||||
T Consensus 82 ~~~~~HW~v~nip~~~~~~~g~~~~~Y~~P~Pp~G~HRYvflly~Q~~~~-~~~~~~~R~~F~~~~Fa~~~~L~~PvA~n 160 (175)
T PLN00169 82 LREYLHWLVTDIPATTGATFGQEVVCYESPRPTAGIHRFVFVLFRQLGRQ-TVYAPGWRQNFNTRDFAELYNLGSPVAAV 160 (175)
T ss_pred cccEEEEEEeCCccccccccCccceeecCCCCCCCceeEEEEEEEcCCCc-ccCCcccCCCcCHHHHHHHhCCCCceEEE
Confidence 99999999999999865567899999999999999999999999999885 33445789999999999999999999999
Q ss_pred EEEEEeCCCCCCC
Q 037140 160 YFNCQKEPASRRR 172 (172)
Q Consensus 160 ~f~~~~~~~~~~~ 172 (172)
||++||++++++|
T Consensus 161 fF~a~~~~~~~~~ 173 (175)
T PLN00169 161 YFNCQRESGSGGR 173 (175)
T ss_pred EEEEecCCcCCcc
Confidence 9999999999876
No 2
>KOG3346 consensus Phosphatidylethanolamine binding protein [General function prediction only]
Probab=100.00 E-value=3.6e-52 Score=322.26 Aligned_cols=171 Identities=45% Similarity=0.817 Sum_probs=159.7
Q ss_pred CcccCCccccCCcccccCCCCCCCeeEEEEECC-eeecCCCccCCCCCCCCCeEEEec--CCCcceEEEEeCCCCCCCCC
Q 037140 1 MAASVDPLVVGRVIGDVVDMFVPSVGMSVYYGS-KHVTNGCDVKPSMATSPPKLNITG--HSDELYTLVMTDPDAPSPSE 77 (172)
Q Consensus 1 ~~~~~~~l~~~~iipdvl~~f~p~~~L~V~y~~-~~v~~G~~l~~~~t~~~P~v~~~~--~~~~~ytlim~DpD~p~~~~ 77 (172)
|..+.+.+.+++|++|+|+.+.|++.|+|+|++ ..|++|+.|++++++++|.|+|.+ +.+++|||||+|||||++++
T Consensus 1 ~~~~~~~~~~~~iv~Dvl~~~~p~~~l~V~y~~~~~v~~G~~l~pt~~~~~P~v~~~~~a~~~~~yTLvm~DPDaPsr~~ 80 (185)
T KOG3346|consen 1 MSDIRDPLNKHRIVPDVLDDFEPSVKLNVTYNSDIVVENGNELTPTQVKNRPIVSWDGFADPGSLYTLVMTDPDAPSRSD 80 (185)
T ss_pred CcchhhhhhccCcchhhhccCCCceEEEEEeCCCeeecCCCEeCchhhccCCeEEEcCcCCCCCeEEEEEeCCCCCCCCC
Confidence 567889999999999999999999999999987 999999999999999999999996 78999999999999999999
Q ss_pred CCCcceEEEEEEeeCCCCCCCCCcccccccCCCCC--CCCceEEEEEEeecCCCCCcc-CCCCCCCcCHHHHHHHhCCCC
Q 037140 78 PRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPP--VGIHRYIMVLFQQKAPLGLVE-QPPTRANFNTRLFAGNLDLGL 154 (172)
Q Consensus 78 ~~~~~~lHwlv~ni~~~~~~~~g~~~~~Y~~P~P~--~G~HRY~fll~~q~~~~~~~~-~~~~R~~Fn~~~f~~~~~L~~ 154 (172)
|++++|||||++|||++.+.+.|++++.|+||.|+ +|.|||+|+||+|+.+++... .+..|++||+++|+++++|++
T Consensus 81 p~~rE~lHWlV~nIPg~~~~~~G~~i~~Y~~P~Pp~~tG~HRyVfll~rQ~~~~~~~~~~~~~R~~F~~~~F~~~~~lg~ 160 (185)
T KOG3346|consen 81 PKFREWLHWLVTNIPGTDGISKGQEISEYLGPGPPKGTGLHRYVFLLYRQPGRLDSDEPSPLSRGNFNTRKFAKKYELGT 160 (185)
T ss_pred CcceeEEEEEEEeecCCccccCCeEeeeeeCCCCCCCCCceEEEEEEEEcCCccccccCCCCcccceeHHHHHHHhccCC
Confidence 99999999999999999778899999999999997 899999999999999974432 358999999999999999999
Q ss_pred ceEEEEEEEEeCCCCCC
Q 037140 155 PVATIYFNCQKEPASRR 171 (172)
Q Consensus 155 pva~~~f~~~~~~~~~~ 171 (172)
||||+||++|||...+.
T Consensus 161 PvA~~~f~aq~d~~~~~ 177 (185)
T KOG3346|consen 161 PVAGNFFQAQWDDYVPK 177 (185)
T ss_pred chhhheehhhcchhhHH
Confidence 99999999999987654
No 3
>cd00866 PEBP_euk PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in eukaryotes. Members here include those in plants such as Arabidopsis thaliana FLOWERING LOCUS (FT) and TERMINAL FLOWER1 (FT1) which function as a promoter and a repressor of the floral transitions, respectively as well as the mammalian Raf kinase inhibitory protein (RKIP) which inhibits MAP kinase (Raf-MEK-ERK), G protein-coupled receptor (GPCR) kinase and NFkappaB signaling cascades. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer).
Probab=100.00 E-value=4.4e-38 Score=238.68 Aligned_cols=138 Identities=44% Similarity=0.861 Sum_probs=124.1
Q ss_pred eEEEEECC-eeecCCCccCCCCCCCCCeEEEec--CCCcceEEEEeCCCCCCCCCCCCcceEEEEEEeeCCCCC----CC
Q 037140 26 GMSVYYGS-KHVTNGCDVKPSMATSPPKLNITG--HSDELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTN----PA 98 (172)
Q Consensus 26 ~L~V~y~~-~~v~~G~~l~~~~t~~~P~v~~~~--~~~~~ytlim~DpD~p~~~~~~~~~~lHwlv~ni~~~~~----~~ 98 (172)
.|.|+|++ ..+.+|+.|++++++.+|+|+|+. ..+++|+|||+|||+|.+.++.++++||||++||+.+.. ..
T Consensus 2 ~l~v~y~~~~~v~~G~~l~~~~~~~~P~i~~~~~~~~~~~y~lvm~DpD~p~~~~~~~~~~lHwl~~ni~~~~~~~~~~~ 81 (154)
T cd00866 2 DLTVSYGSSGVVTPGNLLTPSETQKAPTVSFSSEDPPDKLYTLVMVDPDAPSRDDPKFREWLHWLVTNIPGSDTTTGLVS 81 (154)
T ss_pred eEEEEECCCcCcCCCCCCCHHHhCcCCeEEEecCCCCCCeEEEEEECCCCCCCCCCCCCCEEEEEEeCcCCccccccccC
Confidence 68999998 899999999999999999999999 478999999999999999999999999999999998853 34
Q ss_pred CCcccccccCCCCC--CCCceEEEEEEeecCCCCCcc------CCCCCCCcCHHHHHHHhCCCCceEEEEEEE
Q 037140 99 QGMEILPYMGPRPP--VGIHRYIMVLFQQKAPLGLVE------QPPTRANFNTRLFAGNLDLGLPVATIYFNC 163 (172)
Q Consensus 99 ~g~~~~~Y~~P~P~--~G~HRY~fll~~q~~~~~~~~------~~~~R~~Fn~~~f~~~~~L~~pva~~~f~~ 163 (172)
.|..+++|+||+|+ +|.|||+|+||+|+..+.... ....|.+||+++|++++||+.|||+|||++
T Consensus 82 ~~~~~~~Y~~P~Pp~g~g~HRY~fll~~q~~~~~~~~~~~~~~~~~~r~~F~~~~F~~~~~L~~pva~~~f~~ 154 (154)
T cd00866 82 KGEVLVPYLGPGPPKGTGPHRYVFLLFKQPGGLDFPESKLPPTSGLGRRGFDVREFAKKNGLGLPVAANFFQV 154 (154)
T ss_pred CCCCcceeeCCCCCCCCCCccEEEEEEEeCCccCccccccccCCccccCCcCHHHHHHHhCCCCcEEEEEEeC
Confidence 67899999999996 479999999999998863221 257999999999999999999999999985
No 4
>PF01161 PBP: Phosphatidylethanolamine-binding protein; InterPro: IPR008914 The PEBP (PhosphatidylEthanolamine-Binding Protein) family is a highly conserved group of proteins that have been identified in numerous tissues in a wide variety of organisms, including bacteria, yeast, nematodes, plants, drosophila and mammals. The various functions described for members of this family include lipid binding, neuronal development [], serine protease inhibition [], the control of the morphological switch between shoot growth and flower structures [], and the regulation of several signalling pathways such as the MAP kinase pathway [], and the NF-kappaB pathway []. The control of the latter two pathways involves the PEBP protein RKIP, which interacts with MEK and Raf-1 to inhibit the MAP kinase pathway, and with TAK1, NIK, IKKalpha and IKKbeta to inhibit the NF-kappaB pathway. Other PEBP-like proteins that show strong structural homology to PEBP include Escherichia coli YBHB and YBCL, the Rattus norvegicus (Rat) neuropeptide HCNP, and Antirrhinum majus (Garden snapdragon) protein centroradialis (CEN). Structures have been determined for several members of the PEBP-like family, all of which show extensive fold conservation. The structure consists of a large central beta-sheet flanked by a smaller beta-sheet on one side, and an alpha helix on the other. Sequence alignments show two conserved central regions, CR1 and CR2, that form a consensus signature for the PEBP family. These two regions form part of the ligand-binding site, which can accommodate various anionic groups. The N- and C-terminal regions are the least conserved, and may be involved in interactions with different protein partners. The N-terminal residues 2-12 form the natural cleavage peptide HCNP involved in neuronal development. The C-terminal region is deleted in plant and bacterial PEBP homologues, and may help control accessibility to the active site. ; PDB: 1BD9_A 1BEH_A 2QYQ_A 2L7W_A 3AXY_A 2IQX_C 2IQY_A 1KN3_A 1FUX_A 1B7A_A ....
Probab=99.96 E-value=2.5e-29 Score=188.95 Aligned_cols=129 Identities=37% Similarity=0.737 Sum_probs=104.7
Q ss_pred eeEEEEE-CCeeecCCCccCCCC-CCCCCeEEEecCCCcceEEEEeCCCCCCCCCCCCcceEEEEEEeeC---------C
Q 037140 25 VGMSVYY-GSKHVTNGCDVKPSM-ATSPPKLNITGHSDELYTLVMTDPDAPSPSEPRMREWVHWIVVDIP---------G 93 (172)
Q Consensus 25 ~~L~V~y-~~~~v~~G~~l~~~~-t~~~P~v~~~~~~~~~ytlim~DpD~p~~~~~~~~~~lHwlv~ni~---------~ 93 (172)
..|.|+| ++..+++|+.+++.. +...|+ .+++|+|+|+|+|+|.+.+++.++++|||++||+ .
T Consensus 2 ~~L~v~f~~~~~~~~G~~~sp~~~~~~~P~------~~~~y~lim~D~D~P~~~~~~~~~~~Hwl~~ni~~~~~~~~~~~ 75 (146)
T PF01161_consen 2 GKLPVKFTGNKSVCPGNNVSPPLSWQNAPT------GTKSYTLIMVDPDAPSRENPSFGPFLHWLVTNIPSTELPEGSDG 75 (146)
T ss_dssp CEEEEEECTTEECSTTEEEEGGGECSS-TC------TTSEEEEEEEETTSSBTTSCTTTSEEEEEEEEEETSEE-TTSST
T ss_pred cCcCceeEcccccCCCCCCCcCcccccCCC------CCcEEEEEEECCCCCccccCCCCcEEEEEEcCCCCccCCCCCCc
Confidence 4699999 689999999999988 777777 5889999999999999999999999999999999 1
Q ss_pred C-CC-CCCCcccccccCCCCC--CCCceEEEEEEeecCCCCCccCCCCCCCcCHHHHHHHhCCCCc-eEEEEEE
Q 037140 94 G-TN-PAQGMEILPYMGPRPP--VGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLP-VATIYFN 162 (172)
Q Consensus 94 ~-~~-~~~g~~~~~Y~~P~P~--~G~HRY~fll~~q~~~~~~~~~~~~R~~Fn~~~f~~~~~L~~p-va~~~f~ 162 (172)
. .+ .+.|+.+++|.||+|+ +|.|||+|+||+|+..+ .+ ......+++++..++++|+.+ +|++||+
T Consensus 76 ~~~~~~~~g~~~~~Y~~P~Pp~g~g~HrY~f~ly~q~~~~-~l--~~~~~~~~~~~~~~~~~L~~~~l~~~y~r 146 (146)
T PF01161_consen 76 ARQGINSSGQVIAPYLGPCPPKGSGPHRYVFLLYAQPSPL-PL--SDGATKFDLREAFKGHGLGPASLAGNYFR 146 (146)
T ss_dssp CETSBGGTSEEEES--SB-SSTTSSCEEEEEEEEEESSSS-TS--GBSSTHHTHHHHHHHTTEESEESEEEEEE
T ss_pred cEecccccCccccEEcCCcCcCcCCCceEEEEEEEcCCCC-CC--CCCCCHHHHHHHHHcCCCCCceEEEEEEC
Confidence 0 01 1236678999999997 56999999999999965 32 345566889999999999887 8999997
No 5
>cd00457 PEBP PhosphatidylEthanolamine-Binding Protein (PEBP) domain. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). A number of biological roles for members of the PEBP family include serine protease inhibition, membrane biogenesis, regulation of flowering plant stem architecture, and Raf-1 kinase inhibition. Although their overall structures are similar, the members of the PEBP family bind very different substrates including phospholipids, opioids, and hydrophobic odorant molecules as well as having different oligomerization states (monomer/dimer/tetramer).
Probab=99.92 E-value=7.9e-25 Score=167.37 Aligned_cols=123 Identities=33% Similarity=0.511 Sum_probs=96.7
Q ss_pred eecC-CCccCC----CCCCCCCeEEEec--CCCcceEEEEeCCCCCCCCCCCCcceEEEEEEeeCCCCCC----------
Q 037140 35 HVTN-GCDVKP----SMATSPPKLNITG--HSDELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNP---------- 97 (172)
Q Consensus 35 ~v~~-G~~l~~----~~t~~~P~v~~~~--~~~~~ytlim~DpD~p~~~~~~~~~~lHwlv~ni~~~~~~---------- 97 (172)
.+.+ |+.|+. ......|.|+|++ +.+++|+|+|+|||+|.. ++|+||+++||+.+...
T Consensus 6 ~~~~~g~~lp~~~~~~g~~~sP~l~w~~~p~~t~s~ali~~DpDap~~-----~~~~HWvv~nIp~~~~~~~~~~~~~~~ 80 (159)
T cd00457 6 EVGPSGSVLPPEYSFEGVGRFPSLSWDGPPPDVKEYVLVMEDPDAPLG-----RPIVHGLVYGIPANKTSLSNDDFVVTD 80 (159)
T ss_pred CcCCCCCccChhhccCCCCcCCceEecCCCCCCeEEEEEEECCCCCCC-----CCceEEEEeccCcccccccccccccCC
Confidence 4455 777777 5666689999998 478999999999999843 48999999999987421
Q ss_pred --CCCc----------ccccccCCCCCC--CCceEEEEEEeecCCCCCccCCCCCCCcCHHHHHHHhCCCCceEEEEEEE
Q 037140 98 --AQGM----------EILPYMGPRPPV--GIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNC 163 (172)
Q Consensus 98 --~~g~----------~~~~Y~~P~P~~--G~HRY~fll~~q~~~~~~~~~~~~R~~Fn~~~f~~~~~L~~pva~~~f~~ 163 (172)
..+. ....|.||+||. |.|||+|+||+|+..++.......|..+++.+|++.|.|+ ++|.+++++
T Consensus 81 ~~~~~~~~~n~~g~~~~~~~Y~GP~PP~G~g~HrY~f~lyald~~~~~~~~~~~~~~~~~~~~~~~~vL~-~~a~~~~~~ 159 (159)
T cd00457 81 NGKGGLQGGFKYGKNRGGTVYIGPRPPLGHGPHRYFFQVYALDEPLDRSKLGDGRTKFEVARFAEGNVLG-AVGEWVGQF 159 (159)
T ss_pred CCccceeccccccccCCCcCCcCCCCCCCCCCeeEEEEEEEecCccccccccCCCCHHHHHHHHHhCeee-EEEEEEEEC
Confidence 0111 235999999986 5899999999999886322123689999999999999996 789998863
No 6
>cd00865 PEBP_bact_arch PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.
Probab=99.77 E-value=3.2e-18 Score=129.64 Aligned_cols=92 Identities=32% Similarity=0.603 Sum_probs=72.5
Q ss_pred CCCeEEEec--CCCcceEEEEeCCCCCCCCCCCCcceEEEEEEeeCCCCC-CCCC----------------cccccccCC
Q 037140 49 SPPKLNITG--HSDELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTN-PAQG----------------MEILPYMGP 109 (172)
Q Consensus 49 ~~P~v~~~~--~~~~~ytlim~DpD~p~~~~~~~~~~lHwlv~ni~~~~~-~~~g----------------~~~~~Y~~P 109 (172)
..|.|+|++ +++++|+|+|+|+|+|.. .+++||+++||+.+.+ ...| .....|.||
T Consensus 26 ~SP~l~w~~~p~~t~s~al~m~D~Dap~~-----~~~~HW~~~nIp~~~~~i~~g~~~~~~~~~~~~g~n~~~~~~Y~gP 100 (150)
T cd00865 26 VSPPLSWSGVPAGTKSLALIVEDPDAPTG-----GGFVHWVVWNIPADTTELPEGASRGALPAGAVQGRNDFGEAGYGGP 100 (150)
T ss_pred cCCCeEEcCCCCCCeEEEEEEEcCCCCCC-----CCEEEEEEeccCcccccccCCcccccCCCCCeEeecCCCCCeecCC
Confidence 367899998 579999999999999833 4899999999998621 1111 246899999
Q ss_pred CCCC-CCceEEEEEEeecCCCCCccCCCCCCCcCHHHHHHHhC
Q 037140 110 RPPV-GIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLD 151 (172)
Q Consensus 110 ~P~~-G~HRY~fll~~q~~~~~~~~~~~~R~~Fn~~~f~~~~~ 151 (172)
||+. +.|||+|.||+++..+.. ...+...++.++..
T Consensus 101 ~Pp~~~~HrY~f~vyAld~~l~~------~~~~~~~~l~~ai~ 137 (150)
T cd00865 101 CPPDGGPHRYVFTVYALDVPLLL------PPGATRAELLFAMK 137 (150)
T ss_pred CCcCCCceEEEEEEEEeCCccCC------CCCCCHHHHHHHHh
Confidence 9986 899999999999988621 35677777776654
No 7
>PRK10257 putative kinase inhibitor protein; Provisional
Probab=99.76 E-value=2e-17 Score=126.23 Aligned_cols=75 Identities=32% Similarity=0.692 Sum_probs=60.6
Q ss_pred CCeEEEec--CCCcceEEEEeCCCCCCCCCCCCcceEEEEEEeeCCCCCC-----C-------CCc-------ccccccC
Q 037140 50 PPKLNITG--HSDELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTNP-----A-------QGM-------EILPYMG 108 (172)
Q Consensus 50 ~P~v~~~~--~~~~~ytlim~DpD~p~~~~~~~~~~lHwlv~ni~~~~~~-----~-------~g~-------~~~~Y~~ 108 (172)
+|.|+|++ +.+++|+|+|+|||+|.. ..|+||+++|||++... . .|. ....|.|
T Consensus 31 SP~L~w~~~P~~t~s~ali~~DpDap~~-----~~~~HWvv~nIP~~~~~l~eg~~~~~~~~p~g~~~g~n~~g~~gY~G 105 (158)
T PRK10257 31 SPHLAWDDVPAGTKSFVVTCYDPDAPTG-----SGWWHWVVVNLPADTRVLPQGFGSGLVALPDGVLQTRTDFGKAGYGG 105 (158)
T ss_pred CceEEEcCCCCCceEEEEEEECCCCCCC-----CcEEEEEEEcCCCCcccccCCCCcccccCCCCceeccccCCCccCcC
Confidence 68999998 678999999999999875 37999999999986321 0 011 2468999
Q ss_pred CCCCCC-CceEEEEEEeecC-CC
Q 037140 109 PRPPVG-IHRYIMVLFQQKA-PL 129 (172)
Q Consensus 109 P~P~~G-~HRY~fll~~q~~-~~ 129 (172)
||||.| .|||+|.||+++. .+
T Consensus 106 P~PP~g~~HrY~f~vyALd~~~L 128 (158)
T PRK10257 106 AAPPKGETHRYIFTVHALDVERI 128 (158)
T ss_pred CCCccCCCceEEEEEEEecCccc
Confidence 999987 7999999999984 44
No 8
>COG1881 Phospholipid-binding protein [General function prediction only]
Probab=99.75 E-value=5.1e-18 Score=131.13 Aligned_cols=114 Identities=27% Similarity=0.542 Sum_probs=80.9
Q ss_pred CeeecCCCccCCCCC----CCCCeEEEec--CCCcceEEEEeCCCCCCCCCCCCcceEEEEEEeeCCCCC-----CC---
Q 037140 33 SKHVTNGCDVKPSMA----TSPPKLNITG--HSDELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTN-----PA--- 98 (172)
Q Consensus 33 ~~~v~~G~~l~~~~t----~~~P~v~~~~--~~~~~ytlim~DpD~p~~~~~~~~~~lHwlv~ni~~~~~-----~~--- 98 (172)
+..+..|+.++...| .-.|.++|++ .++++|+|+|.|||||.. ..|+||+++||+.+.. ..
T Consensus 27 s~~f~~g~~ip~~~t~~g~~~sPpl~ws~~P~~tkS~AL~v~DpDAP~g-----~~~~HWvv~nIp~~~~~~~~~~~~~~ 101 (174)
T COG1881 27 SNAFADGAPIPDEYTCGGPNISPPLSWSGVPEGTKSFALTVDDPDAPTG-----GGWVHWVVANIPADVTELPEGSGPKS 101 (174)
T ss_pred chhhhCCCccchhhhcCCCCcCCceeecCCCCCCeeEEEEEECCCCCCC-----CcEEEEEEEccCCccccccccccccc
Confidence 457778888876654 3478999998 789999999999999974 4899999999998321 00
Q ss_pred --------CCcccccccCCCCCCCC-ceEEEEEEeecCCCCCccCCCCCCCcCHHHHHHHhCCC
Q 037140 99 --------QGMEILPYMGPRPPVGI-HRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLG 153 (172)
Q Consensus 99 --------~g~~~~~Y~~P~P~~G~-HRY~fll~~q~~~~~~~~~~~~R~~Fn~~~f~~~~~L~ 153 (172)
.+-.-..|.|||||.|. |||.|.||+++..+..+ +.....=.+.+-++.|.|+
T Consensus 102 ~~~~~qg~Nd~g~~~Y~Gp~PP~g~~HrY~f~vyALd~~~~~~--~~g~~~~~~~~~~~~hil~ 163 (174)
T COG1881 102 KIGIVQGINDFGSRGYGGPCPPKGHGHRYYFTVYALDVELLLL--PAGASGAELGKAMEGHILA 163 (174)
T ss_pred ccceEEeeccccccCcccCCCCCCCCeEEEEEEEEcccccccC--CCCCCHHHHHHHHHHHHHH
Confidence 01123569999999887 99999999998865221 1122222344445556664
No 9
>TIGR00481 Raf kinase inhibitor-like protein, YbhB/YbcL family.
Probab=99.72 E-value=5.8e-17 Score=121.66 Aligned_cols=91 Identities=33% Similarity=0.711 Sum_probs=70.3
Q ss_pred CCeEEEec--CCCcceEEEEeCCCCCCCCCCCCcceEEEEEEeeCCCCC-----CC-------CC--------ccccccc
Q 037140 50 PPKLNITG--HSDELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTN-----PA-------QG--------MEILPYM 107 (172)
Q Consensus 50 ~P~v~~~~--~~~~~ytlim~DpD~p~~~~~~~~~~lHwlv~ni~~~~~-----~~-------~g--------~~~~~Y~ 107 (172)
.|.|+|++ .++++|+|+|+|+|+|... .|+||+++|||.+.. .. .| -....|.
T Consensus 15 SP~l~w~~~P~~t~s~al~~~D~Dap~~~-----~~~HWv~~nIp~~~~~l~e~~~~~~~~~~~g~~~~g~n~~g~~~Y~ 89 (141)
T TIGR00481 15 SPPLSWDGVPEGAKSLALTCIDPDAPTGC-----GWWHWVVVNIPADTTVLPENASSDDKRLPQGVPLQGRNDFGKSGYI 89 (141)
T ss_pred CcEEEEcCCCCCceEEEEEEECCCCCCCC-----CeEEEEEecCCCCcccccCCccccccccCCcceeEeeccCCCccEe
Confidence 67899998 6789999999999998764 499999999998521 11 11 1257999
Q ss_pred CCCCCCCCceEEEEEEeecCC-CCCccCCCCCCCcCHHHHHHHhC
Q 037140 108 GPRPPVGIHRYIMVLFQQKAP-LGLVEQPPTRANFNTRLFAGNLD 151 (172)
Q Consensus 108 ~P~P~~G~HRY~fll~~q~~~-~~~~~~~~~R~~Fn~~~f~~~~~ 151 (172)
|||||.|.|||+|.||+++.. ++ + ..++...++.++..
T Consensus 90 GP~PP~g~HrY~f~vyALd~~~l~-l-----~~~~~~~~l~~ai~ 128 (141)
T TIGR00481 90 GPCPPKGDHRYLFTVYALDTEKLD-L-----DPGFSLADLGDAME 128 (141)
T ss_pred CCCCcCCCEEEEEEEEEecCCCCC-C-----CCCCCHHHHHHHHh
Confidence 999998889999999999876 52 1 13677777776654
No 10
>PRK09818 putative kinase inhibitor; Provisional
Probab=99.72 E-value=3.5e-17 Score=127.53 Aligned_cols=95 Identities=28% Similarity=0.588 Sum_probs=71.5
Q ss_pred EEEEECCeeecCCCccCCCCCC---------CCCeEEEec--CCCcceEEEEeCCCCCCCCCCCCcceEEEEEEeeCCCC
Q 037140 27 MSVYYGSKHVTNGCDVKPSMAT---------SPPKLNITG--HSDELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGT 95 (172)
Q Consensus 27 L~V~y~~~~v~~G~~l~~~~t~---------~~P~v~~~~--~~~~~ytlim~DpD~p~~~~~~~~~~lHwlv~ni~~~~ 95 (172)
|.|+ +..+.+|..|+.+.+. ..|.|+|++ +++++|+|+|.|||+|... .|+||+++|||++.
T Consensus 22 ~~lt--S~~f~~G~~ip~~~~~~~~~~~G~n~SP~L~W~~~P~gtks~aLi~~DpDaP~g~-----~~~HWvv~nIP~~~ 94 (183)
T PRK09818 22 FQVT--SNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGAPEGTKSFAVTVYDPDAPTGS-----GWWHWTVANIPATV 94 (183)
T ss_pred EEEE--CcCccCcCCCCHHHcccccCCCCCCcceeEEEccCCCCcEEEEEEEECCCCCCCC-----cEEEEEEEcCCCCc
Confidence 5554 5566788888765321 379999998 6789999999999998753 69999999999763
Q ss_pred C-----C--------CCC-------cccccccCCCCCCC--CceEEEEEEeecCC
Q 037140 96 N-----P--------AQG-------MEILPYMGPRPPVG--IHRYIMVLFQQKAP 128 (172)
Q Consensus 96 ~-----~--------~~g-------~~~~~Y~~P~P~~G--~HRY~fll~~q~~~ 128 (172)
. . ..| -....|.|||||.| .|||+|.||+++..
T Consensus 95 ~~l~eg~~~~~~~~~~~g~~~g~N~~g~~gY~GP~PP~G~g~HrY~F~vyALd~~ 149 (183)
T PRK09818 95 TYLPADAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTD 149 (183)
T ss_pred cccCCCCcccccccCCCCCEEeecCCCCCceECCCCccCCCCEEEEEEEEEecCc
Confidence 1 0 001 12468999999754 89999999999843
No 11
>KOG3586 consensus TBX1 and related T-box transcription factors [Transcription]
Probab=26.48 E-value=85 Score=27.63 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=29.7
Q ss_pred cCCCccC--CCCCCCCCeEEE--ec-CCCcceEEEEeCCCCCCCCCCCCcceEE---EEEEe
Q 037140 37 TNGCDVK--PSMATSPPKLNI--TG-HSDELYTLVMTDPDAPSPSEPRMREWVH---WIVVD 90 (172)
Q Consensus 37 ~~G~~l~--~~~t~~~P~v~~--~~-~~~~~ytlim~DpD~p~~~~~~~~~~lH---wlv~n 90 (172)
..|.++- ++--..-|+|++ .+ +..+.|.|+| |-- | -.+..|+...| ||+++
T Consensus 95 ~lGTEMIITKsGRRMFPTvrV~~~GldP~a~Y~vlm-DvV-P-vD~KRYRYayH~S~WlvAG 153 (437)
T KOG3586|consen 95 DLGTEMIITKSGRRMFPTVRVKFSGLDPMADYYVLM-DVV-P-VDSKRYRYAYHSSSWLVAG 153 (437)
T ss_pred hcCceEEEecccccccceEEEEEecCCcccceEEEE-eEE-e-cccceeeeeecccceeeec
Confidence 3565543 333345788655 45 8888895554 431 1 22334777776 99886
No 12
>PRK04243 50S ribosomal protein L15e; Validated
Probab=21.01 E-value=86 Score=24.80 Aligned_cols=27 Identities=22% Similarity=0.544 Sum_probs=20.1
Q ss_pred CcceEEEEeCCCCCCCCCCCCcceEEEEEE
Q 037140 60 DELYTLVMTDPDAPSPSEPRMREWVHWIVV 89 (172)
Q Consensus 60 ~~~ytlim~DpD~p~~~~~~~~~~lHwlv~ 89 (172)
-+.|-|||+||.-|.-.+. +-+.|+..
T Consensus 127 yK~fEVIlVDp~H~aIr~D---p~~nWI~~ 153 (196)
T PRK04243 127 YKWYEVILVDPHHPAIKND---PDLNWICD 153 (196)
T ss_pred cccEEEEEecCCCcchhcC---cccceecc
Confidence 4678999999988764432 57888874
Done!