Query 037140
Match_columns 172
No_of_seqs 132 out of 1238
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 15:14:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wko_A Terminal flower 1 prote 100.0 8.8E-55 3E-59 337.7 16.1 171 1-172 8-180 (180)
2 3axy_A Protein heading DATE 3A 100.0 4.2E-53 1.5E-57 325.6 16.2 165 1-167 5-170 (170)
3 2iqy_A Phosphatidylethanolamin 100.0 2.7E-47 9.4E-52 297.9 15.6 165 3-169 3-180 (190)
4 2jyz_A CG7054-PA, GH14779P, PE 100.0 1.2E-46 4.3E-51 291.7 15.6 157 11-168 2-169 (179)
5 2gzq_A Phosphatidylethanolamin 100.0 2.9E-45 1E-49 288.4 12.7 163 2-166 12-200 (200)
6 1wpx_B Carboxypeptidase Y inhi 100.0 8.6E-45 3E-49 289.5 13.4 163 3-166 11-220 (220)
7 3n08_A Putative phosphatidylet 99.9 1.2E-22 4.2E-27 153.2 15.5 123 35-165 10-150 (153)
8 1fux_A Hypothetical 19.5 kDa p 99.9 9.4E-23 3.2E-27 155.8 11.1 92 33-129 7-132 (166)
9 1fjj_A Hypothetical 17.1 kDa p 99.9 1.1E-21 3.8E-26 148.9 12.3 76 49-129 31-129 (159)
10 2evv_A Hypothetical protein HP 99.8 7.6E-20 2.6E-24 143.9 11.5 118 39-166 47-200 (207)
11 3ewt_E Tumor necrosis factor r 27.8 23 0.00078 17.9 1.0 11 142-152 15-25 (25)
No 1
>1wko_A Terminal flower 1 protein; CIS-peptide, PEBP, signaling protein; 1.80A {Arabidopsis thaliana} PDB: 1qou_A
Probab=100.00 E-value=8.8e-55 Score=337.73 Aligned_cols=171 Identities=47% Similarity=0.908 Sum_probs=153.1
Q ss_pred CcccCCccccCCcccccCCCCCCCeeEEEEECCeeecCCCccCCCCCCCCCeEEEec-CCCcceEEEEeCCCCCCCCCCC
Q 037140 1 MAASVDPLVVGRVIGDVVDMFVPSVGMSVYYGSKHVTNGCDVKPSMATSPPKLNITG-HSDELYTLVMTDPDAPSPSEPR 79 (172)
Q Consensus 1 ~~~~~~~l~~~~iipdvl~~f~p~~~L~V~y~~~~v~~G~~l~~~~t~~~P~v~~~~-~~~~~ytlim~DpD~p~~~~~~ 79 (172)
|+++.++|+.++||||+|+.|.|++.|+|+|++..|.+|+.|+++++..+|+|+|++ +.+++|||+|+|||+|++++++
T Consensus 8 ~~~~~~~l~~~~vipdvl~~f~P~~~l~V~y~s~~v~~G~~l~~~~~~~~P~l~~~~~~~~~~ytlvm~DPDaP~~~~p~ 87 (180)
T 1wko_A 8 GTRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMIDPDVPGPSDPF 87 (180)
T ss_dssp --CTTHHHHHTTHHHHTBCCCCCCSEEEEEETTEECCTTCBCCGGGGSSCCEEEEESSCTTCEEEEEEEECSCSBTTBCT
T ss_pred HHHHHHHHHhCCCCCCccCCcCCCeeEEEEECCeEcCCCCCcCHHHhCcCCeEEEecCCCCceEEEEEeCCCCCCCccCC
Confidence 788999999999999999999999999999999999999999999999999999999 5566999999999999999999
Q ss_pred CcceEEEEEEeeCCCCCCCCCcccccccCCCCCCCCceEEEEEEeecCCCCCcc-CCCCCCCcCHHHHHHHhCCCCceEE
Q 037140 80 MREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVE-QPPTRANFNTRLFAGNLDLGLPVAT 158 (172)
Q Consensus 80 ~~~~lHwlv~ni~~~~~~~~g~~~~~Y~~P~P~~G~HRY~fll~~q~~~~~~~~-~~~~R~~Fn~~~f~~~~~L~~pva~ 158 (172)
+++|+|||++|||++.+...|..+++|.||+|++|.|||+|+||+|+..+ .+. .+..|.+||+++|+++++|+.|||+
T Consensus 88 ~~~~~HWlv~nIp~~~~~~~G~~~~~Y~gP~Pp~G~HRYvf~ly~q~~~l-~~~~~~~~R~~F~~~~F~~~~~Lg~PVa~ 166 (180)
T 1wko_A 88 LKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFVFVLFRQKQRR-VIFPNIPSRDHFNTRKFAVEYDLGLPVAA 166 (180)
T ss_dssp TCCEEEEEEEEEETTSBGGGSEEEECCCCCCCCSSCEEEEEEEEECCTTC-CCCCCCCCSTTCCHHHHHHHTTCCSEEEE
T ss_pred CccEEEEEEeccCcCccccCCceeeeeCCCCCCCCceEEEEEEEecCCcc-CCCCCccccCCcCHHHHHHHhCCCCcEEE
Confidence 99999999999999865566899999999999999999999999999876 333 2679999999999999999999999
Q ss_pred EEEEEEeCCCCCCC
Q 037140 159 IYFNCQKEPASRRR 172 (172)
Q Consensus 159 ~~f~~~~~~~~~~~ 172 (172)
|||++|||+++|||
T Consensus 167 ~fF~~q~d~~~r~~ 180 (180)
T 1wko_A 167 VFFNAQRETAARKR 180 (180)
T ss_dssp EEEEECCC------
T ss_pred EEEEEEECCcccCC
Confidence 99999999999987
No 2
>3axy_A Protein heading DATE 3A; phosphatidylethanolamine-binding protein, 14-3-3 protein, BZ protein, floral induction; HET: SEP; 2.40A {Oryza sativa japonica group} PDB: 1wkp_A
Probab=100.00 E-value=4.2e-53 Score=325.58 Aligned_cols=165 Identities=54% Similarity=0.939 Sum_probs=154.2
Q ss_pred CcccCCccccCCcccccCCCCCCCeeEEEEECCeeecCCCccCCCCCCCCCeEEEec-CCCcceEEEEeCCCCCCCCCCC
Q 037140 1 MAASVDPLVVGRVIGDVVDMFVPSVGMSVYYGSKHVTNGCDVKPSMATSPPKLNITG-HSDELYTLVMTDPDAPSPSEPR 79 (172)
Q Consensus 1 ~~~~~~~l~~~~iipdvl~~f~p~~~L~V~y~~~~v~~G~~l~~~~t~~~P~v~~~~-~~~~~ytlim~DpD~p~~~~~~ 79 (172)
|++ +++|++++||||||+.|.|++.|+|+|++..|.+|+.|+++++..+|+|+|++ +.+++|||+|+|||+|++++++
T Consensus 5 m~~-~~~l~~~~vipdvl~~F~P~~~l~v~y~s~~v~~G~~l~~~~~~~~P~l~~~~~~~~~~ytlvm~DpDaP~~~~p~ 83 (170)
T 3axy_A 5 MRD-RDPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGLELKPSMVTHQPRVEVGGNDMRTFYTLVMVDPDAPSPSDPN 83 (170)
T ss_dssp CCT-TCHHHHTTHHHHTBCCCCCCSCEEEEETTEECCTTEECCGGGSSSCCEEEECCSCTTCEEEEEEEETTCSCTTSCT
T ss_pred cch-hchhhhCCccccccCCcCCceEEEEEECCeEcCCCCEeCHHHhCcCCeEEEeCCCCCcEEEEEEECCCCCCCccCC
Confidence 654 89999999999999999999999999999999999999999999999999999 5579999999999999999999
Q ss_pred CcceEEEEEEeeCCCCCCCCCcccccccCCCCCCCCceEEEEEEeecCCCCCccCCCCCCCcCHHHHHHHhCCCCceEEE
Q 037140 80 MREWVHWIVVDIPGGTNPAQGMEILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATI 159 (172)
Q Consensus 80 ~~~~lHwlv~ni~~~~~~~~g~~~~~Y~~P~P~~G~HRY~fll~~q~~~~~~~~~~~~R~~Fn~~~f~~~~~L~~pva~~ 159 (172)
+++|+||+++|||++.+.+.|+++++|.||+|++|.|||+|+||+|+..+ .+..+..|.+||+++|+++++|+.|||+|
T Consensus 84 ~~~~~HWlv~nIp~~~~~~~G~~~~~Y~gP~Pp~G~HRY~f~ly~q~~~l-~~~~p~~R~~F~~~~F~~~~~Lg~Pva~~ 162 (170)
T 3axy_A 84 LREYLHWLVTDIPGTTAASFGQEVMSYESPRPTMGIHRLVFVLFQQLGRQ-TVYAPGWRQNFNTKDFAELYNLGSPVAAV 162 (170)
T ss_dssp TCSEEEEEEEEEETTSBGGGSEEEECCCCCCCCSSCEEEEEEEEECSSCC-CCCCCSCSTTCCHHHHHHHTTCCSCSEEE
T ss_pred CccEEEEEEeCCCCCccccCCceeceecCCCCCCCcEEEEEEEEecCCcc-CCCCccccCCcCHHHHHHHhCCCCcEEEE
Confidence 99999999999999866667888999999999999999999999999886 44456899999999999999999999999
Q ss_pred EEEEEeCC
Q 037140 160 YFNCQKEP 167 (172)
Q Consensus 160 ~f~~~~~~ 167 (172)
||++|||.
T Consensus 163 fF~~q~d~ 170 (170)
T 3axy_A 163 YFNSQREA 170 (170)
T ss_dssp EEEECCCC
T ss_pred EEEEEecC
Confidence 99999984
No 3
>2iqy_A Phosphatidylethanolamine-binding protein 1; alpha-beta, hydrolase inhibitor; 1.40A {Rattus norvegicus} PDB: 2iqx_A 1b7a_A* 1a44_A 1beh_A 1bd9_A 2l7w_A 2qyq_A* 1kn3_A
Probab=100.00 E-value=2.7e-47 Score=297.89 Aligned_cols=165 Identities=32% Similarity=0.625 Sum_probs=148.7
Q ss_pred ccCCcccc--CCcccccCCCCCCCeeEEEEEC-CeeecCCCccCCCCCCCCCe-EEEec-CCCcceEEEEeCCCCCCCCC
Q 037140 3 ASVDPLVV--GRVIGDVVDMFVPSVGMSVYYG-SKHVTNGCDVKPSMATSPPK-LNITG-HSDELYTLVMTDPDAPSPSE 77 (172)
Q Consensus 3 ~~~~~l~~--~~iipdvl~~f~p~~~L~V~y~-~~~v~~G~~l~~~~t~~~P~-v~~~~-~~~~~ytlim~DpD~p~~~~ 77 (172)
++.++|++ ++||||||+. .|+..|+|+|+ +..|.+|+.|+++++...|+ |+|++ ..+++|||+|+|||+|++++
T Consensus 3 ~~~~~~~~~~~~vipdvl~~-~p~~~l~v~~~~~~~v~~G~~l~~~~~~~~P~~l~~~~~~~~~~ytlvm~DpDaP~~~~ 81 (190)
T 2iqy_A 3 AMAADISQWAGPLSLQEVDE-PPQHALRVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSRKD 81 (190)
T ss_dssp CSSCCGGGTTSTTCGGGTSS-CCSEECEEECSSCBCCSTTEECCGGGGSSCCSEEECTTCCTTSEEEEEEEESSSSCSSS
T ss_pred HHHHHHHHhcCccCCcCcCC-CCCceEEEEECCCcccCCCCEECHHHHhCCCceEEEccCCCCCEEEEEEECCCCCCCCC
Confidence 45678999 9999999998 99999999995 58899999999999999999 99998 54699999999999999999
Q ss_pred CCCcceEEEEEEeeCCCCCCCCCcccccccCCCCC--CCCceEEEEEEeecCCCCC----c--cCCCCCCCcCHHHHHHH
Q 037140 78 PRMREWVHWIVVDIPGGTNPAQGMEILPYMGPRPP--VGIHRYIMVLFQQKAPLGL----V--EQPPTRANFNTRLFAGN 149 (172)
Q Consensus 78 ~~~~~~lHwlv~ni~~~~~~~~g~~~~~Y~~P~P~--~G~HRY~fll~~q~~~~~~----~--~~~~~R~~Fn~~~f~~~ 149 (172)
+++++|+||+++|||++ +...|..+++|.||+|+ +|.|||+|+||+|+..++- + .....|.+||+++|+++
T Consensus 82 p~~~~~~HWlv~nIp~~-~~~~G~~~~~Y~gP~Pp~g~g~HRY~f~ly~q~~~l~~~~~~l~~~~~~~R~~F~~~~F~~~ 160 (190)
T 2iqy_A 82 PKFREWHHFLVVNMKGN-DISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSNKSGDNRGKFKVESFRKK 160 (190)
T ss_dssp CTTCCEEEEEEEEEETT-BGGGSEEEECCCCCCCCTTSCCEEEEEEEEECSSCCCCCSCCBCTTCCTTCSSCCHHHHHHH
T ss_pred CCcCCEEEEEEeCCChh-ccccCccccceeCCCCcCCCCceEEEEEEEEeCCccCcchhhccCCCcccCCCcCHHHHHHH
Confidence 99999999999999998 56678899999999997 5689999999999987621 1 13578999999999999
Q ss_pred hCCCCceEEEEEEEEeCCCC
Q 037140 150 LDLGLPVATIYFNCQKEPAS 169 (172)
Q Consensus 150 ~~L~~pva~~~f~~~~~~~~ 169 (172)
++|+.|||+|||++|||++.
T Consensus 161 ~~Lg~pVA~~fF~~q~d~~v 180 (190)
T 2iqy_A 161 YHLGAPVAGTCFQAEWDDSV 180 (190)
T ss_dssp TTCCSCSEEEEEEECCCTTH
T ss_pred hCCCCeeEEEEEEEEccCch
Confidence 99999999999999999853
No 4
>2jyz_A CG7054-PA, GH14779P, PEBP; PEBP/RKIP, molecular modeling, chemical shift variations, titration, unknown function; NMR {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-46 Score=291.70 Aligned_cols=157 Identities=38% Similarity=0.748 Sum_probs=142.1
Q ss_pred CCcccccCCCCCCCeeEEEEEC-CeeecCCCccCCCCCCCCCeEEEec--CCCcceEEEEeCCCCCCCCCCCCcceEEEE
Q 037140 11 GRVIGDVVDMFVPSVGMSVYYG-SKHVTNGCDVKPSMATSPPKLNITG--HSDELYTLVMTDPDAPSPSEPRMREWVHWI 87 (172)
Q Consensus 11 ~~iipdvl~~f~p~~~L~V~y~-~~~v~~G~~l~~~~t~~~P~v~~~~--~~~~~ytlim~DpD~p~~~~~~~~~~lHwl 87 (172)
++||||||+. .|+..|+|+|+ +..|.+|+.|+++++..+|+|+|++ ..+++|||+|+|||+|+++++++++|+|||
T Consensus 2 ~~vipdvl~~-~P~~~l~V~y~~~~~v~~G~~l~~~~~~~~P~l~~~~~p~~t~~ytlvm~DpDaP~~~~p~~~~~~HWl 80 (179)
T 2jyz_A 2 DDIVPDVLDA-VPAGTIKVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLEGKSNLLTLLMVDPDAPTRQDPKYREILHWS 80 (179)
T ss_dssp CCBTTTTBSS-CCSEECEEESSSSCCBCTTEECCSSCTTSCCEEECTTTCCSCSEEEEEEECCCSSCTTCCSSCCCSCCE
T ss_pred CcccCcCcCC-CCcCeEEEEECCCcccCCCCEeCHHHhccCCeEEEeCCCCCceeEEEEEeCCCCCCCccCCCccEEEEE
Confidence 6899999998 99999999997 4899999999999999999999998 345999999999999999999999999999
Q ss_pred EEeeCCCC-CCCCCcccccccCCCCC--CCCceEEEEEEeecCCCCC---c--cCCCCCCCcCHHHHHHHhCCCCceEEE
Q 037140 88 VVDIPGGT-NPAQGMEILPYMGPRPP--VGIHRYIMVLFQQKAPLGL---V--EQPPTRANFNTRLFAGNLDLGLPVATI 159 (172)
Q Consensus 88 v~ni~~~~-~~~~g~~~~~Y~~P~P~--~G~HRY~fll~~q~~~~~~---~--~~~~~R~~Fn~~~f~~~~~L~~pva~~ 159 (172)
++|||++. +...|..+++|.||+|+ +|.|||+|+||+|+..++. + ..+..|.+||+++|+++++|+.|||+|
T Consensus 81 v~nIp~~~~~l~~g~~~~~Y~gP~Pp~g~g~HRY~f~ly~q~~~l~~~~~l~~~~~~~R~~F~~~~F~~~~~Lg~pvA~~ 160 (179)
T 2jyz_A 81 VVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLLYRQENKIEETPTISNTTRTGRLNFNARDFAAKHGLGEPIAAN 160 (179)
T ss_dssp EECCCTTSSSTTSSEEEECCCSCCSCGGGCSEEEEEEEEEECSCCCCSSCBCTTCCSSSCCCCTHHHHHHTTCCSCSEEE
T ss_pred EECCCCCccccCcccccccccCCCCCCCCCceEEEEEEEEcCCcCCchhhccCCCcccCCCcCHHHHHHHhCCCCccEEE
Confidence 99999875 45678899999999997 5689999999999987741 1 135789999999999999999999999
Q ss_pred EEEEEeCCC
Q 037140 160 YFNCQKEPA 168 (172)
Q Consensus 160 ~f~~~~~~~ 168 (172)
||++|||.+
T Consensus 161 ~F~~q~d~~ 169 (179)
T 2jyz_A 161 YYQAQYDDY 169 (179)
T ss_dssp EEEECCCTH
T ss_pred EEEEEecCc
Confidence 999999974
No 5
>2gzq_A Phosphatidylethanolamine-binding protein; structural genomics, PSI, protein structure initiative; HET: MSE; 1.30A {Plasmodium vivax} PDB: 2r77_A
Probab=100.00 E-value=2.9e-45 Score=288.42 Aligned_cols=163 Identities=26% Similarity=0.410 Sum_probs=141.9
Q ss_pred cccCCccccCCcccccCC--CCCCCeeEEEEEC-CeeecCCCccCCCCCCCCCe-EEEec--CCCcceEEEEeCCCCCCC
Q 037140 2 AASVDPLVVGRVIGDVVD--MFVPSVGMSVYYG-SKHVTNGCDVKPSMATSPPK-LNITG--HSDELYTLVMTDPDAPSP 75 (172)
Q Consensus 2 ~~~~~~l~~~~iipdvl~--~f~p~~~L~V~y~-~~~v~~G~~l~~~~t~~~P~-v~~~~--~~~~~ytlim~DpD~p~~ 75 (172)
+.++++|++++||||||| .|+|++.|+|+|+ +..|.+|+.|+++++.++|+ |+|++ +++++|||+|+|||+|++
T Consensus 12 ~~~~~~l~~~~IipDvl~~~~f~p~~~L~V~y~~~~~v~~G~~l~~~~~~~~P~~l~~~~~~~~~~~ytLvm~DPDaP~~ 91 (200)
T 2gzq_A 12 PPTIEELKREKIIPHVFPDENVDLTVDMYISFKSGKEVNHGNILDLAGTGSVPRNIKFSEEPPEDYCYILFMIDPDFPSR 91 (200)
T ss_dssp SCCHHHHHHTTHHHHTSSSSCCCCCCCEEEEEETTEEECSSCEEESTTCSSCCSEEEESSCCCTTEEEEEEEEETTCSCS
T ss_pred HHHHHHHHhCCccCcccCCCCCcceeEEEEEECCCcccCCCCEeCHHHHhCCCceEEEccCCCCCceEEEEEECCCCCCC
Confidence 467899999999999996 4999999999998 59999999999999999998 99998 458999999999999999
Q ss_pred CCCCCcceEEEEEEeeCCCCCCC-----CCcccccccCCCCC--CCCceEEEEEE--eecCCCCC--ccC-----CCCCC
Q 037140 76 SEPRMREWVHWIVVDIPGGTNPA-----QGMEILPYMGPRPP--VGIHRYIMVLF--QQKAPLGL--VEQ-----PPTRA 139 (172)
Q Consensus 76 ~~~~~~~~lHwlv~ni~~~~~~~-----~g~~~~~Y~~P~P~--~G~HRY~fll~--~q~~~~~~--~~~-----~~~R~ 139 (172)
+++++++|+||+++|||++. .. .+..+++|.||+|+ +|.|||+|+|| +|+..+.. +.. ..+|.
T Consensus 92 ~~~~~~~~~HWlv~nIp~~~-~~~g~~~~~~~~~~Y~gP~Pp~g~g~HRYvF~l~~fkQ~~~~~~~~~p~~~~~~~~~R~ 170 (200)
T 2gzq_A 92 RRPDGRDYVHWAVSGIKSKE-LVKGTDKNCITLLPYVGPSIKKGTGLHRISFILSLVKEENKGNVTGVPLYRGEHYITRV 170 (200)
T ss_dssp SCCTTCSEEEEEEEEECSSE-EETTCCTTCEEEECCCCCCCCTTSCCEEEEEEEEEEEGGGTTCBTTBCCCCCGGGCCTT
T ss_pred CCCCCCCEEEEEEeCCCcCc-ccCCccCCCcceeeeeCCCCcCCCCcceEEEEEEEecccCcccccccCccccccccccC
Confidence 99999999999999999863 22 23478999999995 57899999985 99987531 111 13899
Q ss_pred CcCHH----HHHHHhCCCCceEEEEEEEEeC
Q 037140 140 NFNTR----LFAGNLDLGLPVATIYFNCQKE 166 (172)
Q Consensus 140 ~Fn~~----~f~~~~~L~~pva~~~f~~~~~ 166 (172)
+||++ +|++++|| +|||+|||++|++
T Consensus 171 ~F~~~~gv~~F~~~~gL-~pVganfF~~~n~ 200 (200)
T 2gzq_A 171 KFNNCQSAYNVIQMNDM-KIVGFNWCQMRRK 200 (200)
T ss_dssp HHHHTCCHHHHHHHTTC-EEEEEEEEEEECC
T ss_pred ccccchhhHHHHHHcCC-EEEEEEEEEEecC
Confidence 99998 89999999 6999999999974
No 6
>1wpx_B Carboxypeptidase Y inhibitor; carboxypeptidase inhibitor, serine proteinase inhibitor, Pro inhibitor complex; HET: NAG NDG; 2.70A {Saccharomyces cerevisiae} SCOP: b.17.1.1
Probab=100.00 E-value=8.6e-45 Score=289.53 Aligned_cols=163 Identities=33% Similarity=0.558 Sum_probs=143.6
Q ss_pred ccCCccccCCcccccCCC--CCCCeeEEEEECC-eeecCCCccCCCCCCCCCeEEEe-----------c-----CCCcce
Q 037140 3 ASVDPLVVGRVIGDVVDM--FVPSVGMSVYYGS-KHVTNGCDVKPSMATSPPKLNIT-----------G-----HSDELY 63 (172)
Q Consensus 3 ~~~~~l~~~~iipdvl~~--f~p~~~L~V~y~~-~~v~~G~~l~~~~t~~~P~v~~~-----------~-----~~~~~y 63 (172)
.++++|++++||||||+. |.|++.|+|+|++ ..|.+|+.|++++|...|.|+|. . +++++|
T Consensus 11 ~~~~~l~~~~IipDvl~~~~F~P~~~L~V~y~~~~~v~~G~~l~~~~t~~~P~v~~~~~~~~~~~~~~~~~~~p~~~~~~ 90 (220)
T 1wpx_B 11 ASIDSYKKHGILEDVIHDTSFQPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQDDDLF 90 (220)
T ss_dssp HHHHHHHHTTHHHHTSCCTTCCCSEEEEEEEETTEEECSSCBCCGGGGSSCCEEEEEEETTCC------CCCCCCSSCCE
T ss_pred HHHHHHHhCCCCccccCCcCCCCceEEEEEECCCcEeCCCCCcCHHHhcCCCeeEeCCCCCcccccccccccCCCCCceE
Confidence 467899999999999998 9999999999987 78999999999999999999988 1 358999
Q ss_pred EEEEeCCCCCCCCCCCCcceEEEEEEeeCCCCC-------C---------CCC-cccccccCCCCC--CCCceEEEEEEe
Q 037140 64 TLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTN-------P---------AQG-MEILPYMGPRPP--VGIHRYIMVLFQ 124 (172)
Q Consensus 64 tlim~DpD~p~~~~~~~~~~lHwlv~ni~~~~~-------~---------~~g-~~~~~Y~~P~P~--~G~HRY~fll~~ 124 (172)
+|+|+|||+|++.++++++|+||+++|||++.. . +.| ...++|.||+|+ +|.|||+|+||+
T Consensus 91 ~lvm~DpDaP~~~~p~~~~~~HW~v~nIp~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~Y~gP~Pp~g~g~HRY~f~lya 170 (220)
T 1wpx_B 91 TLVMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMGPAPPKGSGPHRYVFLLYK 170 (220)
T ss_dssp EEEEEESSSSCSSCCTTCSEEEEEEEEEEECC---------CCEEEEEEECTTCEEEECCCCCCCCTTSCCEEEEEEEEE
T ss_pred EEEEECCCCCCCCCCCcCcEEEEEEEccCCCccccccccCCCCccceEeecCCccccccccCCCCccCCCCceEEEEEEe
Confidence 999999999999999999999999999998631 1 235 678999999997 568999999999
Q ss_pred ecCCCC--CccCCCCCCCcC-------HHHHHHHhCCCCceEEEEEEEEeC
Q 037140 125 QKAPLG--LVEQPPTRANFN-------TRLFAGNLDLGLPVATIYFNCQKE 166 (172)
Q Consensus 125 q~~~~~--~~~~~~~R~~Fn-------~~~f~~~~~L~~pva~~~f~~~~~ 166 (172)
|+..++ .+..+..|.+|+ +++|++++|| .|||+|||++||+
T Consensus 171 ~~~~l~~~~~~~~~~R~~f~~~~~~f~~~~F~~~~~L-~pVAanfF~~q~~ 220 (220)
T 1wpx_B 171 QPKGVDSSKFSKIKDRPNWGYGTPATGVGKWAKENNL-QLVASNFFYAETK 220 (220)
T ss_dssp CCTTCCGGGSCCCCCSBGGGCCSSSCSHHHHHHTTTC-EEEEEEEEEECCC
T ss_pred cCCcCCccccCCcccccCCCccccchhHHHHHHHhCC-eEEEEEEEEEecC
Confidence 998763 133467899999 9999999999 7899999999996
No 7
>3n08_A Putative phosphatidylethanolamine-binding protein; eukarytic homolog RAF kinase inhibitor protein (RKIP). csgid structural genomics; 1.25A {Chlamydia trachomatis} SCOP: b.17.1.0
Probab=99.90 E-value=1.2e-22 Score=153.15 Aligned_cols=123 Identities=21% Similarity=0.378 Sum_probs=88.4
Q ss_pred eecCCCccCCCCC----CCCCeEEEec--CCCcceEEEEeCCCCCCCCCCCCcceEEEEEEeeCCCCC-CCC--------
Q 037140 35 HVTNGCDVKPSMA----TSPPKLNITG--HSDELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTN-PAQ-------- 99 (172)
Q Consensus 35 ~v~~G~~l~~~~t----~~~P~v~~~~--~~~~~ytlim~DpD~p~~~~~~~~~~lHwlv~ni~~~~~-~~~-------- 99 (172)
.+.+|..|+...+ ...|.|+|++ +++++|+|+|+|||+|++.++ .+.|+||+++|||++.+ ...
T Consensus 10 ~f~~g~~ip~~~t~~G~n~SP~l~w~~~P~~tks~ali~~DpDAPs~~~~-~~~~~HWvv~nIp~~~~~l~~g~~~g~~~ 88 (153)
T 3n08_A 10 AFSYGRPIPKKYSCQGVGISPPLSFSDVPREAKSLVLIVEDPDVPPSVRE-DGLWIHWIVYNLSPVVSNLAEGAQIFAVQ 88 (153)
T ss_dssp TBCTTEECCGGGSTTSCCCCCCEEEECCCTTCCEEEEEEEETTSCTTTCT-TSCEEEEEEEEECTTCCEECTTCCCSSEE
T ss_pred CcCCCCCCCHHHcCCCCCcCcEEEEcCCCCCCeEEEEEEECCCCCCccCC-CCcEEEEEEEcCCCCcccccCCCCCCceE
Confidence 4555666655543 2478999998 568999999999999998775 47999999999998632 111
Q ss_pred Cc---ccccccCCCCCCCCceEEEEEEeecCCCCCccCCCCCCCcCHHHHHHHhCCCCceEEEEEEEEe
Q 037140 100 GM---EILPYMGPRPPVGIHRYIMVLFQQKAPLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFNCQK 165 (172)
Q Consensus 100 g~---~~~~Y~~P~P~~G~HRY~fll~~q~~~~~~~~~~~~R~~Fn~~~f~~~~~L~~pva~~~f~~~~ 165 (172)
|. ....|.||+||.|.|||+|+||+|+..+ . -..++...++.+..+- .-+|-.-.+..+
T Consensus 89 g~n~~g~~~Y~GP~PP~g~HrY~F~vyAld~~L-~-----l~~~~~~~~l~~a~~g-hvl~~a~l~g~y 150 (153)
T 3n08_A 89 GLNTAGEIGYCPPCPPDAKHRYYFYAYALDVVL-S-----DEEGVTKEQLLEAMDG-HIIATAELMGTY 150 (153)
T ss_dssp CBCTTSSBSCCCCCCSSSCEEEEEEEEEESSCC-C-----CCSSCCHHHHHHHHTT-TEEEEEEEEEEE
T ss_pred eecCCCCccccCCcCcCCCEEEEEEEEEECCcC-C-----CCCCCCHHHHHHHhhh-CeEEEEEEEEEE
Confidence 11 4689999999998999999999999876 2 2235677777666553 225554444433
No 8
>1fux_A Hypothetical 19.5 kDa protein in EMRE-RUS intergenic region; beta protein, unknown function; 1.81A {Escherichia coli} SCOP: b.17.1.2
Probab=99.89 E-value=9.4e-23 Score=155.81 Aligned_cols=92 Identities=29% Similarity=0.588 Sum_probs=74.6
Q ss_pred CeeecCCCccCCCCCCC---------CCeEEEec--CCCcceEEEEeCCCCCCCCCCCCcceEEEEEEeeCCCCC-CCC-
Q 037140 33 SKHVTNGCDVKPSMATS---------PPKLNITG--HSDELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTN-PAQ- 99 (172)
Q Consensus 33 ~~~v~~G~~l~~~~t~~---------~P~v~~~~--~~~~~ytlim~DpD~p~~~~~~~~~~lHwlv~ni~~~~~-~~~- 99 (172)
+..+.+|+.|++..+.. .|.|+|++ +++++|+|+|+|||+|++ +.|+||+++|||++.. ...
T Consensus 7 S~~~~~g~~ip~~~~~~~~~~~G~n~sP~l~w~~~P~~t~s~ali~~DPDAP~~-----~~~~HW~v~nIp~~~~~l~~g 81 (166)
T 1fux_A 7 SNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTG-----SGWWHWTVVNIPATVTYLPVD 81 (166)
T ss_dssp CSSCCTTSBCCGGGBCEETTEECCCCCCCEEEECCCTTCCEEEEEEEETTSTTT-----TCEEEEEEEEEETTCCEECTT
T ss_pred ccCcCCcCCCCHHHhccccccCCCCcCCeEEEeCCCCCCeEEEEEEECCCCCCC-----CcEEEeEEeCcCCCcccccCC
Confidence 45677899999887765 89999998 578999999999999975 4799999999998631 111
Q ss_pred -----------Cc-------ccccccCCCCCCC--CceEEEEEEeecC-CC
Q 037140 100 -----------GM-------EILPYMGPRPPVG--IHRYIMVLFQQKA-PL 129 (172)
Q Consensus 100 -----------g~-------~~~~Y~~P~P~~G--~HRY~fll~~q~~-~~ 129 (172)
|. ....|.||+||.| .|||+|+||+|+. .+
T Consensus 82 ~~~~~~~~l~~g~~~g~nd~g~~~Y~GP~PP~g~g~HRY~F~lyald~~~l 132 (166)
T 1fux_A 82 AGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTEKI 132 (166)
T ss_dssp TTCTTCTTSCTTCEECCCTTSSSSCCCBCCCTTCCCEECEEEEEEESCSCC
T ss_pred ccccccccCCCCcEEeecCCCCccccCCCCcCCCCcEEEEEEEeEeccccC
Confidence 11 3789999999865 8999999999987 45
No 9
>1fjj_A Hypothetical 17.1 kDa protein in MODC-BIOA intergenic region; PEPB family, lipid binding protein; HET: MSE EPE; 1.66A {Escherichia coli} SCOP: b.17.1.2 PDB: 1vi3_A*
Probab=99.87 E-value=1.1e-21 Score=148.88 Aligned_cols=76 Identities=33% Similarity=0.678 Sum_probs=62.5
Q ss_pred CCCeEEEec--CCCcceEEEEeCCCCCCCCCCCCcceEEEEEEeeCCCCC-CCC-----------Cc-------cccccc
Q 037140 49 SPPKLNITG--HSDELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGTN-PAQ-----------GM-------EILPYM 107 (172)
Q Consensus 49 ~~P~v~~~~--~~~~~ytlim~DpD~p~~~~~~~~~~lHwlv~ni~~~~~-~~~-----------g~-------~~~~Y~ 107 (172)
..|.|+|++ +++++|+|+|+|||+|++ +.|+||+++|||++.. ... |. ....|.
T Consensus 31 ~sP~l~w~~~P~~t~s~ali~~DPDAP~~-----~~~~HW~v~nIp~~~~~l~~g~~~~~~~~~~g~~~g~n~~g~~~Y~ 105 (159)
T 1fjj_A 31 ISPHLAWDDVPAGTKSFVVTCYDPDAPTG-----SGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYD 105 (159)
T ss_dssp CCCCEEEECCCTTCCEEEEEEEETTSTTT-----TCEEEEEEEEEETTCCEECTTGGGTSSCCCTTCEECBCTTSSBSCC
T ss_pred cCCeEEEcCCCCCCeEEEEEEECCCCCCC-----CcEEEEEEEccCCCccccCCCcccccccCCCCcEEeecCCCCCccc
Confidence 367899998 678999999999999975 3799999999998632 111 11 378999
Q ss_pred CCCCCCC-CceEEEEEEeecC-CC
Q 037140 108 GPRPPVG-IHRYIMVLFQQKA-PL 129 (172)
Q Consensus 108 ~P~P~~G-~HRY~fll~~q~~-~~ 129 (172)
||+||.| .|||+|+||+|+. .+
T Consensus 106 GP~PP~g~~HRY~F~lyald~~~l 129 (159)
T 1fjj_A 106 GAAPPKGETHRYIFTVHALDIERI 129 (159)
T ss_dssp CBCCSTTCCEEEEEEEEEESSSCC
T ss_pred CCCCcCCCceEEEEEEEEccCccc
Confidence 9999988 7999999999987 45
No 10
>2evv_A Hypothetical protein HP0218; alpha-beta structure, dimer, structural genomics, PSI, prote structure initiative; HET: MSE; 2.59A {Helicobacter pylori}
Probab=99.82 E-value=7.6e-20 Score=143.89 Aligned_cols=118 Identities=22% Similarity=0.274 Sum_probs=83.5
Q ss_pred CCccCC-CCC-CCCCeEEEec-CCCcceEEEEeCCCCCCCCCCCCcceEEEEEEeeCCCC---C------------CC--
Q 037140 39 GCDVKP-SMA-TSPPKLNITG-HSDELYTLVMTDPDAPSPSEPRMREWVHWIVVDIPGGT---N------------PA-- 98 (172)
Q Consensus 39 G~~l~~-~~t-~~~P~v~~~~-~~~~~ytlim~DpD~p~~~~~~~~~~lHwlv~ni~~~~---~------------~~-- 98 (172)
|+.++| ... ...|.|+|++ +++++|+|+|+|||+|++. .++|+||+++||+.+. + .+
T Consensus 47 G~~~sP~~~~p~~Sp~L~W~~~~gtks~aLvm~DPDAP~~~---g~~~~HWvv~NI~~~~l~eg~~~~~~g~~qG~N~~~ 123 (207)
T 2evv_A 47 PKAFLNSNGLPTYSPKISWQKVEGAQSYALELIDHDAQKVC---GMPFVHWVVGNIAHNVLEENASMMDKRIVQGVNSLT 123 (207)
T ss_dssp CGGGBCTTSCBCCCCCEEECCCTTCSEEEEEEEETTHHHHH---SSCEEEEEEEEECSSEECTTHHHHCSSSEECCCTTC
T ss_pred CCCcCCccCCCCccceEEEecCCCCeEEEEEEECCCCCCCC---CCcEEEEEEeCCCCCccccCcccCCCCceecccccc
Confidence 666766 333 3357899988 7899999999999999864 3589999999995431 0 01
Q ss_pred --CCccc-------------ccccCCCCCCCCceEEEEEEeecC-CCCCccCCCCCCCcCHHHHHHHhCCCCceEEEEEE
Q 037140 99 --QGMEI-------------LPYMGPRPPVGIHRYIMVLFQQKA-PLGLVEQPPTRANFNTRLFAGNLDLGLPVATIYFN 162 (172)
Q Consensus 99 --~g~~~-------------~~Y~~P~P~~G~HRY~fll~~q~~-~~~~~~~~~~R~~Fn~~~f~~~~~L~~pva~~~f~ 162 (172)
.|... ..|.|||||.|.|||+|+||+|+. .+ . -...|...++.+...- .-+|-.-.+
T Consensus 124 ~~~g~~~~~~~~k~~~~~~~~~Y~GP~PP~G~HRYvF~vyALd~~~L-~-----l~~~~~~~~l~~am~g-HvLa~a~l~ 196 (207)
T 2evv_A 124 QGFIRSPLNESEKQRSNLNNSVYIGPMPPNGDHHYLIQVYALDIPKL-A-----LKAPFFLGDLHDKMRN-HIIAIGRKE 196 (207)
T ss_dssp SCSTTCSSCHHHHHHHHHHTCSCCCCCCSSSCEEEEEEEEEESSSCC-C-----CCSSCCHHHHHHHHTT-CEEEEEEEE
T ss_pred cccccccccccccccccccccccCCCCCCCCcEEEEEEEEEecCccC-C-----CCCCCCHHHHHHHhhc-CeEEEEEEE
Confidence 22211 889999999999999999999987 54 1 2356777777666553 235555555
Q ss_pred EEeC
Q 037140 163 CQKE 166 (172)
Q Consensus 163 ~~~~ 166 (172)
..+.
T Consensus 197 g~y~ 200 (207)
T 2evv_A 197 FLYK 200 (207)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 4443
No 11
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=27.85 E-value=23 Score=17.86 Aligned_cols=11 Identities=9% Similarity=0.147 Sum_probs=8.4
Q ss_pred CHHHHHHHhCC.
Q 037140 142 NTRLFAGNLDL. 152 (172)
Q Consensus 142 n~~~f~~~~~L. 152 (172)
++.+|++++|+
T Consensus 15 ~Vk~fvR~~gi. 25 (25)
T 3ewt_E 15 QVKGFVRKNGVx 26 (26)
T ss_pred HHHHHHHHcCC.
Confidence 46788888875
Done!