BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037141
         (98 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FUQ|A Chain A, Glycosylated Sv2 And Gangliosides As Dual Receptors For
           Botulinum Neurotoxin Serotype F
          Length = 417

 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 36  YFRELG-QNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHAFDLCQDVKIFA 94
           YF ++   N   +I+C    +   KI  NYN   W  Q T+ + + +  F+  Q + I  
Sbjct: 84  YFNKVNLNNEYTIIDCIRNNNSGWKISLNYNKIIWTLQDTAGNNQ-KLVFNYTQMISISD 142

Query: 95  FID 97
           +I+
Sbjct: 143 YIN 145


>pdb|3RSJ|A Chain A, Structure Of Hcrf In Complex With Ganglioside Gd1a
 pdb|3RSJ|B Chain B, Structure Of Hcrf In Complex With Ganglioside Gd1a
 pdb|3RSJ|C Chain C, Structure Of Hcrf In Complex With Ganglioside Gd1a
 pdb|3RSJ|D Chain D, Structure Of Hcrf In Complex With Ganglioside Gd1a
          Length = 413

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 36  YFRELG-QNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQHAFDLCQDVKIFA 94
           YF ++   N   +I+C    +   KI  NYN   W  Q T+ + + +  F+  Q + I  
Sbjct: 80  YFNKVNLNNEYTIIDCIRNNNSGWKISLNYNKIIWTLQDTAGNNQ-KLVFNYTQMISISD 138

Query: 95  FID 97
           +I+
Sbjct: 139 YIN 141


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,499,336
Number of Sequences: 62578
Number of extensions: 87294
Number of successful extensions: 175
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 9
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)