Query 037141
Match_columns 98
No_of_seqs 110 out of 1120
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 09:04:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0065 Pleiotropic drug resis 99.9 3.7E-28 8E-33 205.2 6.8 94 3-97 979-1072(1391)
2 KOG0061 Transporter, ABC super 99.9 3.9E-22 8.4E-27 160.7 6.9 68 3-77 219-286 (613)
3 PLN03140 ABC transporter G fam 99.8 8.3E-20 1.8E-24 157.9 8.8 94 3-96 1068-1161(1470)
4 TIGR00956 3a01205 Pleiotropic 99.8 3.8E-19 8.3E-24 153.3 8.9 93 3-96 951-1043(1394)
5 TIGR00955 3a01204 The Eye Pigm 99.7 5.5E-17 1.2E-21 130.6 8.1 87 3-96 215-306 (617)
6 PLN03140 ABC transporter G fam 99.7 7.7E-17 1.7E-21 139.7 7.7 87 3-96 386-484 (1470)
7 TIGR00956 3a01205 Pleiotropic 99.7 1.6E-16 3.5E-21 137.2 8.1 87 3-96 259-355 (1394)
8 KOG0065 Pleiotropic drug resis 99.6 5.9E-16 1.3E-20 131.9 7.3 89 2-97 309-409 (1391)
9 PLN03211 ABC transporter G-25; 99.6 1.5E-15 3.3E-20 123.4 7.4 68 3-77 255-322 (659)
10 cd03232 ABC_PDR_domain2 The pl 96.3 0.0079 1.7E-07 41.8 4.5 36 3-38 157-192 (192)
11 cd03234 ABCG_White The White s 96.2 0.01 2.2E-07 42.1 4.5 35 3-38 192-226 (226)
12 cd03213 ABCG_EPDR ABCG transpo 96.1 0.012 2.5E-07 41.1 4.6 35 3-38 160-194 (194)
13 COG1131 CcmA ABC-type multidru 96.1 0.0085 1.8E-07 44.8 4.0 43 5-53 188-230 (293)
14 PRK15177 Vi polysaccharide exp 95.2 0.032 7E-07 39.5 4.0 45 3-53 152-196 (213)
15 cd03233 ABC_PDR_domain1 The pl 95.1 0.041 9E-07 38.5 4.4 34 4-38 169-202 (202)
16 PRK13643 cbiO cobalt transport 95.1 0.04 8.8E-07 40.7 4.4 58 3-68 193-253 (288)
17 cd03217 ABC_FeS_Assembly ABC-t 95.0 0.043 9.4E-07 38.3 4.2 36 3-40 153-189 (200)
18 PRK14245 phosphate ABC transpo 94.4 0.067 1.5E-06 38.4 4.0 37 3-41 194-230 (250)
19 PRK11614 livF leucine/isoleuci 94.3 0.074 1.6E-06 37.8 4.2 37 3-41 186-222 (237)
20 PRK13537 nodulation ABC transp 94.2 0.071 1.5E-06 39.9 3.9 37 3-41 187-223 (306)
21 PRK14244 phosphate ABC transpo 94.1 0.089 1.9E-06 37.8 4.1 37 3-41 197-233 (251)
22 PRK13652 cbiO cobalt transport 94.0 0.094 2E-06 38.5 4.2 36 4-41 188-223 (277)
23 COG1120 FepC ABC-type cobalami 94.0 0.094 2E-06 39.0 4.1 37 3-41 188-224 (258)
24 cd03301 ABC_MalK_N The N-termi 93.8 0.091 2E-06 36.6 3.7 33 4-38 181-213 (213)
25 cd03261 ABC_Org_Solvent_Resist 93.8 0.1 2.2E-06 37.1 3.9 36 4-41 187-222 (235)
26 cd03260 ABC_PstB_phosphate_tra 93.7 0.11 2.3E-06 36.7 4.0 35 5-41 191-225 (227)
27 cd03219 ABC_Mj1267_LivG_branch 93.7 0.1 2.2E-06 36.9 3.9 37 3-41 192-228 (236)
28 PRK13634 cbiO cobalt transport 93.6 0.11 2.4E-06 38.4 4.1 36 4-41 196-231 (290)
29 TIGR03740 galliderm_ABC gallid 93.6 0.12 2.7E-06 36.3 4.1 37 3-41 173-209 (223)
30 PRK14239 phosphate transporter 93.6 0.12 2.6E-06 37.0 4.0 37 3-41 196-232 (252)
31 cd03218 ABC_YhbG The ABC trans 93.5 0.13 2.7E-06 36.4 4.1 37 3-41 182-218 (232)
32 cd03258 ABC_MetN_methionine_tr 93.5 0.12 2.7E-06 36.5 4.0 36 4-41 191-226 (233)
33 TIGR01188 drrA daunorubicin re 93.5 0.13 2.8E-06 38.3 4.2 37 3-41 173-209 (302)
34 PRK13536 nodulation factor exp 93.4 0.13 2.8E-06 39.3 4.1 37 3-41 221-257 (340)
35 TIGR01288 nodI ATP-binding ABC 93.3 0.14 3E-06 38.1 4.1 37 3-41 184-220 (303)
36 TIGR03873 F420-0_ABC_ATP propo 93.3 0.14 2.9E-06 37.0 4.0 37 3-41 186-222 (256)
37 TIGR01184 ntrCD nitrate transp 93.3 0.11 2.4E-06 37.0 3.5 35 4-40 165-199 (230)
38 COG3638 ABC-type phosphate/pho 93.3 0.12 2.6E-06 38.4 3.7 38 3-42 197-234 (258)
39 cd03299 ABC_ModC_like Archeal 93.3 0.16 3.5E-06 36.2 4.3 36 4-41 180-215 (235)
40 TIGR02770 nickel_nikD nickel i 93.3 0.15 3.1E-06 36.3 4.0 36 4-41 176-211 (230)
41 COG1134 TagH ABC-type polysacc 93.2 0.17 3.8E-06 37.5 4.5 45 3-53 196-240 (249)
42 PRK11231 fecE iron-dicitrate t 93.2 0.13 2.8E-06 37.1 3.7 37 3-41 187-223 (255)
43 TIGR02315 ABC_phnC phosphonate 93.2 0.12 2.6E-06 36.7 3.5 36 4-41 196-231 (243)
44 PRK14237 phosphate transporter 93.2 0.15 3.3E-06 37.1 4.1 37 3-41 211-247 (267)
45 PRK09493 glnQ glutamine ABC tr 93.2 0.16 3.5E-06 36.1 4.2 37 3-41 185-221 (240)
46 cd03289 ABCC_CFTR2 The CFTR su 93.2 0.14 3.1E-06 37.9 3.9 36 3-41 186-221 (275)
47 PRK13645 cbiO cobalt transport 93.2 0.15 3.1E-06 37.6 4.0 36 4-41 201-236 (289)
48 PRK10771 thiQ thiamine transpo 93.1 0.17 3.6E-06 35.9 4.2 36 4-41 180-215 (232)
49 cd03267 ABC_NatA_like Similar 93.1 0.14 3.1E-06 36.5 3.8 33 4-38 204-236 (236)
50 cd03256 ABC_PhnC_transporter A 93.1 0.18 3.8E-06 35.8 4.3 36 4-41 195-230 (241)
51 PRK14258 phosphate ABC transpo 93.1 0.16 3.5E-06 36.8 4.2 37 4-41 201-241 (261)
52 PRK14253 phosphate ABC transpo 93.1 0.15 3.3E-06 36.5 4.0 37 3-41 193-229 (249)
53 COG4152 ABC-type uncharacteriz 93.1 0.08 1.7E-06 39.8 2.5 37 3-41 179-215 (300)
54 PRK13631 cbiO cobalt transport 93.1 0.15 3.3E-06 38.5 4.1 37 3-41 225-261 (320)
55 PRK14262 phosphate ABC transpo 93.1 0.17 3.6E-06 36.3 4.1 37 3-41 194-230 (250)
56 PRK14247 phosphate ABC transpo 93.0 0.17 3.7E-06 36.2 4.1 37 3-41 194-230 (250)
57 PRK14267 phosphate ABC transpo 93.0 0.15 3.3E-06 36.5 3.9 37 3-41 197-233 (253)
58 cd03296 ABC_CysA_sulfate_impor 93.0 0.2 4.3E-06 35.7 4.4 36 4-41 187-222 (239)
59 cd03257 ABC_NikE_OppD_transpor 93.0 0.15 3.3E-06 35.7 3.8 33 4-38 196-228 (228)
60 cd03266 ABC_NatA_sodium_export 93.0 0.15 3.3E-06 35.6 3.7 34 3-38 185-218 (218)
61 cd03294 ABC_Pro_Gly_Bertaine T 92.9 0.17 3.6E-06 37.0 4.0 36 4-41 211-246 (269)
62 PRK14270 phosphate ABC transpo 92.9 0.15 3.4E-06 36.5 3.8 37 3-41 195-231 (251)
63 TIGR01842 type_I_sec_PrtD type 92.9 0.15 3.2E-06 40.8 3.9 36 3-41 503-538 (544)
64 PRK13636 cbiO cobalt transport 92.8 0.17 3.7E-06 37.2 4.0 36 4-41 192-227 (283)
65 PRK14272 phosphate ABC transpo 92.8 0.19 4E-06 36.0 4.1 37 3-41 196-232 (252)
66 PRK13646 cbiO cobalt transport 92.8 0.18 3.9E-06 37.2 4.1 37 3-41 195-231 (286)
67 PRK09580 sufC cysteine desulfu 92.8 0.34 7.5E-06 34.5 5.5 36 4-41 195-231 (248)
68 TIGR03771 anch_rpt_ABC anchore 92.8 0.17 3.6E-06 35.9 3.8 36 3-41 162-197 (223)
69 COG1132 MdlB ABC-type multidru 92.7 0.17 3.8E-06 40.5 4.2 37 2-41 512-548 (567)
70 PRK11300 livG leucine/isoleuci 92.7 0.17 3.7E-06 36.3 3.8 36 4-41 204-239 (255)
71 cd03263 ABC_subfamily_A The AB 92.7 0.16 3.4E-06 35.6 3.5 37 3-41 181-217 (220)
72 PRK14240 phosphate transporter 92.7 0.2 4.3E-06 35.9 4.1 37 3-41 194-230 (250)
73 cd03295 ABC_OpuCA_Osmoprotecti 92.6 0.21 4.5E-06 35.7 4.0 36 4-41 186-221 (242)
74 PRK10619 histidine/lysine/argi 92.5 0.21 4.5E-06 36.0 4.0 37 3-41 201-237 (257)
75 PRK11153 metN DL-methionine tr 92.5 0.2 4.3E-06 38.1 4.1 36 4-41 191-226 (343)
76 cd03259 ABC_Carb_Solutes_like 92.5 0.19 4.2E-06 35.1 3.7 33 4-38 181-213 (213)
77 PRK10253 iron-enterobactin tra 92.5 0.22 4.9E-06 36.1 4.2 36 4-41 194-229 (265)
78 PRK13547 hmuV hemin importer A 92.4 0.22 4.8E-06 36.6 4.1 36 4-41 205-240 (272)
79 TIGR00968 3a0106s01 sulfate AB 92.4 0.25 5.4E-06 35.3 4.2 36 4-41 181-216 (237)
80 TIGR01846 type_I_sec_HlyB type 92.3 0.21 4.7E-06 41.1 4.3 36 3-41 641-676 (694)
81 PRK11264 putative amino-acid A 92.3 0.24 5.1E-06 35.4 4.0 37 3-41 193-229 (250)
82 TIGR03265 PhnT2 putative 2-ami 92.2 0.19 4E-06 38.6 3.6 36 4-41 185-220 (353)
83 PRK10895 lipopolysaccharide AB 92.2 0.28 6.1E-06 34.9 4.4 37 3-41 186-222 (241)
84 PRK14274 phosphate ABC transpo 92.2 0.25 5.4E-06 35.7 4.1 37 3-41 203-239 (259)
85 TIGR01277 thiQ thiamine ABC tr 92.2 0.25 5.4E-06 34.6 4.0 34 4-39 179-212 (213)
86 cd03214 ABC_Iron-Siderophores_ 92.2 0.25 5.4E-06 33.8 3.9 33 4-38 148-180 (180)
87 cd03249 ABC_MTABC3_MDL1_MDL2 M 92.1 0.22 4.8E-06 35.3 3.7 36 3-41 187-222 (238)
88 TIGR03375 type_I_sec_LssB type 92.1 0.23 5E-06 40.8 4.2 36 3-41 649-684 (694)
89 cd03271 ABC_UvrA_II The excisi 92.1 0.34 7.5E-06 35.8 4.8 36 3-40 221-261 (261)
90 TIGR03410 urea_trans_UrtE urea 92.1 0.27 5.8E-06 34.7 4.1 36 4-41 182-217 (230)
91 PRK13649 cbiO cobalt transport 92.0 0.26 5.5E-06 36.1 4.0 36 4-41 195-230 (280)
92 PRK14248 phosphate ABC transpo 92.0 0.25 5.4E-06 35.9 3.9 37 3-41 212-248 (268)
93 cd03300 ABC_PotA_N PotA is an 91.9 0.28 6.1E-06 34.8 4.0 35 4-40 181-215 (232)
94 PRK11174 cysteine/glutathione 91.9 0.25 5.5E-06 39.7 4.2 36 3-41 533-568 (588)
95 COG3840 ThiQ ABC-type thiamine 91.8 0.28 6.1E-06 35.6 3.9 36 3-40 179-214 (231)
96 TIGR03005 ectoine_ehuA ectoine 91.8 0.31 6.7E-06 35.0 4.2 36 4-41 197-232 (252)
97 PRK13637 cbiO cobalt transport 91.8 0.29 6.3E-06 36.2 4.1 36 4-41 195-230 (287)
98 TIGR01187 potA spermidine/putr 91.8 0.27 5.9E-06 37.1 4.0 36 4-41 151-186 (325)
99 PRK11124 artP arginine transpo 91.8 0.3 6.5E-06 34.8 4.1 37 3-41 190-226 (242)
100 PRK10790 putative multidrug tr 91.7 0.3 6.5E-06 39.3 4.5 36 3-41 524-559 (592)
101 PRK13548 hmuV hemin importer A 91.7 0.31 6.8E-06 35.3 4.1 37 3-41 190-226 (258)
102 TIGR00958 3a01208 Conjugate Tr 91.7 0.25 5.5E-06 40.9 4.0 36 3-41 663-698 (711)
103 PRK15112 antimicrobial peptide 91.6 0.3 6.5E-06 35.5 4.0 36 4-41 200-235 (267)
104 PRK13638 cbiO cobalt transport 91.5 0.34 7.4E-06 35.3 4.2 37 3-41 185-221 (271)
105 cd03224 ABC_TM1139_LivF_branch 91.5 0.33 7.1E-06 34.0 4.0 37 3-41 181-217 (222)
106 TIGR03522 GldA_ABC_ATP gliding 91.5 0.33 7.1E-06 36.1 4.2 37 3-41 181-217 (301)
107 CHL00131 ycf16 sulfate ABC tra 91.5 0.34 7.3E-06 34.7 4.1 38 3-41 200-237 (252)
108 PRK14273 phosphate ABC transpo 91.5 0.33 7.2E-06 34.9 4.1 37 3-41 198-234 (254)
109 PRK13644 cbiO cobalt transport 91.4 0.32 7E-06 35.6 4.0 36 3-41 185-220 (274)
110 cd03269 ABC_putative_ATPase Th 91.4 0.28 6.2E-06 34.1 3.6 34 3-38 177-210 (210)
111 TIGR02769 nickel_nikE nickel i 91.4 0.32 7E-06 35.3 4.0 36 4-41 201-236 (265)
112 TIGR03411 urea_trans_UrtD urea 91.4 0.32 7E-06 34.6 3.9 37 3-41 191-227 (242)
113 cd03268 ABC_BcrA_bacitracin_re 91.4 0.32 6.9E-06 33.8 3.8 34 3-38 175-208 (208)
114 TIGR00972 3a0107s01c2 phosphat 91.3 0.31 6.8E-06 34.8 3.8 36 4-41 193-228 (247)
115 PRK11176 lipid transporter ATP 91.3 0.33 7.2E-06 38.9 4.3 36 3-41 528-563 (582)
116 PRK14256 phosphate ABC transpo 91.3 0.3 6.6E-06 35.0 3.7 37 3-41 196-232 (252)
117 PRK10575 iron-hydroxamate tran 91.2 0.37 8.1E-06 35.0 4.1 36 4-41 198-233 (265)
118 PRK10789 putative multidrug tr 91.1 0.35 7.7E-06 38.9 4.3 36 3-41 499-534 (569)
119 TIGR01978 sufC FeS assembly AT 91.1 0.33 7.2E-06 34.4 3.7 37 3-41 193-230 (243)
120 PRK03695 vitamin B12-transport 91.1 0.41 8.9E-06 34.5 4.2 37 3-41 182-218 (248)
121 cd03252 ABCC_Hemolysin The ABC 91.1 0.38 8.2E-06 34.1 4.0 36 3-41 186-221 (237)
122 TIGR03797 NHPM_micro_ABC2 NHPM 91.0 0.33 7.1E-06 39.9 4.1 35 4-41 635-669 (686)
123 PRK11831 putative ABC transpor 91.0 0.42 9.1E-06 34.8 4.3 36 4-41 194-229 (269)
124 PRK14242 phosphate transporter 91.0 0.38 8.3E-06 34.5 4.0 37 3-41 197-233 (253)
125 PRK13648 cbiO cobalt transport 91.0 0.41 8.9E-06 34.8 4.2 35 4-41 193-227 (269)
126 TIGR03796 NHPM_micro_ABC1 NHPM 90.9 0.35 7.5E-06 39.9 4.1 36 3-41 661-696 (710)
127 cd03265 ABC_DrrA DrrA is the A 90.9 0.39 8.4E-06 33.7 3.8 36 4-41 182-217 (220)
128 cd03270 ABC_UvrA_I The excisio 90.9 0.42 9.1E-06 34.1 4.1 33 3-38 188-226 (226)
129 PRK10744 pstB phosphate transp 90.8 0.4 8.7E-06 34.7 4.0 37 3-41 204-240 (260)
130 PRK09984 phosphonate/organopho 90.8 0.42 9E-06 34.6 4.1 36 4-41 203-238 (262)
131 PRK14246 phosphate ABC transpo 90.7 0.43 9.2E-06 34.7 4.0 37 3-41 201-237 (257)
132 PRK11160 cysteine/glutathione 90.6 0.44 9.5E-06 38.5 4.4 36 3-41 523-558 (574)
133 PRK11247 ssuB aliphatic sulfon 90.5 0.5 1.1E-05 34.5 4.3 36 4-41 184-219 (257)
134 PRK14235 phosphate transporter 90.5 0.43 9.2E-06 34.8 3.9 37 3-41 211-247 (267)
135 cd03293 ABC_NrtD_SsuB_transpor 90.5 0.46 9.9E-06 33.3 3.9 36 4-40 182-218 (220)
136 PRK13651 cobalt transporter AT 90.5 0.39 8.6E-06 36.0 3.8 37 3-41 214-250 (305)
137 PRK13546 teichoic acids export 90.4 0.42 9.1E-06 35.1 3.8 37 3-41 192-228 (264)
138 TIGR02323 CP_lyasePhnK phospho 90.3 0.48 1.1E-05 33.9 4.0 36 4-41 199-234 (253)
139 PRK11650 ugpC glycerol-3-phosp 90.2 0.5 1.1E-05 36.3 4.2 36 4-41 185-220 (356)
140 PRK14250 phosphate ABC transpo 90.2 0.48 1E-05 33.9 3.9 36 4-41 182-217 (241)
141 PRK14268 phosphate ABC transpo 90.2 0.49 1.1E-05 34.2 4.0 37 3-41 202-238 (258)
142 cd03254 ABCC_Glucan_exporter_l 90.2 0.57 1.2E-05 32.9 4.2 35 3-40 187-221 (229)
143 PRK13639 cbiO cobalt transport 90.1 0.55 1.2E-05 34.4 4.2 36 4-41 187-222 (275)
144 PRK09473 oppD oligopeptide tra 90.0 0.54 1.2E-05 35.7 4.2 36 4-41 212-247 (330)
145 PRK13647 cbiO cobalt transport 90.0 0.57 1.2E-05 34.3 4.2 36 4-41 188-223 (274)
146 TIGR02142 modC_ABC molybdenum 90.0 0.45 9.7E-06 36.3 3.7 36 4-41 182-217 (354)
147 PRK14263 phosphate ABC transpo 89.9 0.55 1.2E-05 34.2 4.0 38 3-41 197-241 (261)
148 PRK10418 nikD nickel transport 89.9 0.54 1.2E-05 33.9 4.0 36 4-41 191-226 (254)
149 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 89.9 0.49 1.1E-05 33.6 3.7 34 3-38 191-224 (224)
150 PRK11000 maltose/maltodextrin 89.9 0.5 1.1E-05 36.4 4.0 36 4-41 184-219 (369)
151 TIGR01193 bacteriocin_ABC ABC- 89.8 0.53 1.1E-05 38.8 4.3 36 3-41 658-693 (708)
152 PRK13641 cbiO cobalt transport 89.8 0.56 1.2E-05 34.6 4.1 37 3-41 194-230 (287)
153 PRK14271 phosphate ABC transpo 89.8 0.55 1.2E-05 34.5 4.0 36 4-41 212-247 (276)
154 PRK14236 phosphate transporter 89.7 0.5 1.1E-05 34.5 3.7 37 3-41 216-252 (272)
155 TIGR01192 chvA glucan exporter 89.5 0.62 1.4E-05 37.7 4.5 36 3-41 519-554 (585)
156 PRK14269 phosphate ABC transpo 89.5 0.74 1.6E-05 32.9 4.4 37 3-41 190-226 (246)
157 PRK14259 phosphate ABC transpo 89.5 0.49 1.1E-05 34.5 3.5 38 3-41 202-249 (269)
158 PRK14261 phosphate ABC transpo 89.4 0.53 1.2E-05 33.8 3.7 37 3-41 197-233 (253)
159 PRK14251 phosphate ABC transpo 89.3 0.62 1.4E-05 33.3 3.9 37 3-41 195-231 (251)
160 cd03238 ABC_UvrA The excision 89.2 0.79 1.7E-05 31.8 4.3 26 3-30 138-163 (176)
161 PTZ00243 ABC transporter; Prov 89.2 0.52 1.1E-05 42.7 4.1 37 2-41 1493-1529(1560)
162 PRK14265 phosphate ABC transpo 89.2 0.7 1.5E-05 33.9 4.1 38 3-41 209-254 (274)
163 PRK14238 phosphate transporter 89.2 0.64 1.4E-05 33.9 4.0 37 3-41 215-251 (271)
164 PRK14275 phosphate ABC transpo 89.2 0.65 1.4E-05 34.3 4.0 37 3-41 230-266 (286)
165 PRK13650 cbiO cobalt transport 89.1 0.67 1.4E-05 34.0 4.0 35 4-41 191-225 (279)
166 cd03297 ABC_ModC_molybdenum_tr 89.1 0.6 1.3E-05 32.6 3.6 33 4-38 182-214 (214)
167 PRK13633 cobalt transporter AT 89.0 0.67 1.4E-05 34.0 4.0 35 4-41 195-229 (280)
168 PRK14255 phosphate ABC transpo 89.0 0.69 1.5E-05 33.1 4.0 36 4-41 197-232 (252)
169 TIGR02314 ABC_MetN D-methionin 89.0 0.81 1.8E-05 35.0 4.5 36 4-41 191-226 (343)
170 PRK10070 glycine betaine trans 88.9 0.62 1.3E-05 36.5 3.9 37 3-41 214-250 (400)
171 PRK10419 nikE nickel transport 88.9 0.62 1.3E-05 34.0 3.7 36 4-41 202-237 (268)
172 cd03251 ABCC_MsbA MsbA is an e 88.8 0.74 1.6E-05 32.5 4.0 35 3-40 186-220 (234)
173 PRK13640 cbiO cobalt transport 88.8 0.73 1.6E-05 33.9 4.1 35 4-41 194-228 (282)
174 cd03298 ABC_ThiQ_thiamine_tran 88.8 0.71 1.5E-05 32.1 3.8 33 4-38 179-211 (211)
175 PLN03232 ABC transporter C fam 88.7 0.61 1.3E-05 42.0 4.2 37 2-41 1418-1454(1495)
176 PRK13635 cbiO cobalt transport 88.7 0.72 1.6E-05 33.9 3.9 35 4-41 191-225 (279)
177 TIGR02204 MsbA_rel ABC transpo 88.7 0.7 1.5E-05 36.9 4.2 36 3-41 524-559 (576)
178 PRK13549 xylose transporter AT 88.7 0.68 1.5E-05 36.7 4.0 38 3-42 192-229 (506)
179 PRK11144 modC molybdate transp 88.6 0.72 1.6E-05 35.2 4.0 36 4-41 179-214 (352)
180 PRK13657 cyclic beta-1,2-gluca 88.6 0.76 1.6E-05 37.0 4.3 36 3-41 519-554 (588)
181 PRK09536 btuD corrinoid ABC tr 88.5 0.9 2E-05 35.6 4.6 37 3-41 188-224 (402)
182 cd03247 ABCC_cytochrome_bd The 88.4 0.79 1.7E-05 31.2 3.8 33 3-38 146-178 (178)
183 cd03226 ABC_cobalt_CbiO_domain 88.4 0.53 1.1E-05 32.7 2.9 31 3-35 175-205 (205)
184 PRK11629 lolD lipoprotein tran 88.3 0.82 1.8E-05 32.4 3.9 35 3-40 195-229 (233)
185 PRK13545 tagH teichoic acids e 88.2 0.8 1.7E-05 37.5 4.2 37 3-41 192-228 (549)
186 cd03245 ABCC_bacteriocin_expor 88.2 0.78 1.7E-05 32.0 3.7 32 4-38 189-220 (220)
187 PRK14241 phosphate transporter 88.1 0.83 1.8E-05 32.9 3.9 38 3-41 196-238 (258)
188 PRK11248 tauB taurine transpor 88.1 1 2.2E-05 32.6 4.4 37 4-41 179-216 (255)
189 PRK14260 phosphate ABC transpo 88.0 0.98 2.1E-05 32.6 4.2 38 3-41 198-239 (259)
190 PRK11607 potG putrescine trans 88.0 0.7 1.5E-05 35.8 3.6 37 3-41 199-235 (377)
191 PRK10851 sulfate/thiosulfate t 88.0 0.79 1.7E-05 35.1 3.9 36 4-41 187-222 (353)
192 PRK14243 phosphate transporter 87.9 0.93 2E-05 32.9 4.1 37 3-41 199-244 (264)
193 TIGR03415 ABC_choXWV_ATP choli 87.9 0.85 1.8E-05 35.5 4.1 36 4-41 215-250 (382)
194 TIGR00957 MRP_assoc_pro multi 87.9 0.79 1.7E-05 41.4 4.3 37 2-41 1468-1504(1522)
195 PLN03130 ABC transporter C fam 87.8 0.83 1.8E-05 41.6 4.4 37 2-41 788-824 (1622)
196 cd03288 ABCC_SUR2 The SUR doma 87.7 1 2.2E-05 32.5 4.2 36 3-41 204-239 (257)
197 PRK14266 phosphate ABC transpo 87.6 0.98 2.1E-05 32.3 4.0 37 3-41 194-230 (250)
198 TIGR01186 proV glycine betaine 87.5 0.82 1.8E-05 35.3 3.8 36 4-41 180-215 (363)
199 cd03264 ABC_drug_resistance_li 87.5 0.92 2E-05 31.5 3.7 34 3-38 178-211 (211)
200 TIGR02203 MsbA_lipidA lipid A 87.5 0.92 2E-05 36.2 4.1 36 3-41 517-552 (571)
201 cd03291 ABCC_CFTR1 The CFTR su 87.5 1.1 2.3E-05 33.3 4.2 36 3-41 208-243 (282)
202 PRK10762 D-ribose transporter 87.3 0.96 2.1E-05 35.8 4.1 37 3-41 444-480 (501)
203 PRK15056 manganese/iron transp 87.3 0.94 2E-05 33.0 3.8 36 3-41 191-226 (272)
204 PRK14252 phosphate ABC transpo 87.2 1.2 2.5E-05 32.3 4.3 36 4-41 210-245 (265)
205 TIGR01271 CFTR_protein cystic 87.1 0.84 1.8E-05 41.2 4.0 37 2-41 1400-1436(1490)
206 PRK13549 xylose transporter AT 86.7 1.3 2.7E-05 35.2 4.5 37 3-41 454-490 (506)
207 cd03244 ABCC_MRP_domain2 Domai 86.7 1.1 2.5E-05 31.2 3.8 34 3-39 187-220 (221)
208 cd03216 ABC_Carb_Monos_I This 86.6 1.1 2.5E-05 30.1 3.7 32 3-36 131-162 (163)
209 PLN03232 ABC transporter C fam 86.5 1.1 2.3E-05 40.5 4.3 37 2-41 788-824 (1495)
210 PRK10762 D-ribose transporter 86.4 1.4 3.1E-05 34.9 4.7 38 3-42 190-227 (501)
211 PLN03130 ABC transporter C fam 86.4 0.93 2E-05 41.3 3.9 37 2-41 1421-1457(1622)
212 cd03253 ABCC_ATM1_transporter 86.3 1.2 2.7E-05 31.4 3.9 35 3-40 185-219 (236)
213 PRK14257 phosphate ABC transpo 86.3 1.1 2.5E-05 33.9 3.9 37 3-41 273-309 (329)
214 PRK14249 phosphate ABC transpo 86.2 1.3 2.7E-05 31.8 3.9 37 3-41 195-231 (251)
215 PRK10938 putative molybdenum t 85.9 1.4 3.1E-05 34.6 4.5 37 3-41 184-220 (490)
216 PRK11432 fbpC ferric transport 85.9 1.2 2.6E-05 34.2 3.8 36 4-41 187-222 (351)
217 cd03369 ABCC_NFT1 Domain 2 of 85.8 1.5 3.2E-05 30.4 4.0 34 3-39 173-206 (207)
218 COG4555 NatA ABC-type Na+ tran 85.6 1.1 2.3E-05 33.0 3.3 37 3-41 182-218 (245)
219 TIGR03864 PQQ_ABC_ATP ABC tran 85.5 1.6 3.5E-05 30.9 4.2 35 3-40 182-216 (236)
220 PRK09452 potA putrescine/sperm 85.5 1.6 3.4E-05 33.9 4.4 36 4-41 195-230 (375)
221 PRK11701 phnK phosphonate C-P 85.2 1.3 2.8E-05 31.9 3.6 36 4-41 202-237 (258)
222 KOG0057 Mitochondrial Fe/S clu 85.2 1.3 2.9E-05 36.5 3.9 36 3-41 535-570 (591)
223 PRK13632 cbiO cobalt transport 85.2 1.6 3.5E-05 31.8 4.1 35 4-41 193-227 (271)
224 TIGR02633 xylG D-xylose ABC tr 85.2 1.4 3E-05 34.9 4.0 37 3-41 190-226 (500)
225 COG1121 ZnuC ABC-type Mn/Zn tr 85.1 1.6 3.5E-05 32.5 4.1 37 3-42 188-224 (254)
226 cd03235 ABC_Metallic_Cations A 85.1 1.4 3E-05 30.7 3.6 33 3-38 181-213 (213)
227 PRK11022 dppD dipeptide transp 85.0 1.7 3.6E-05 32.9 4.2 37 3-41 203-239 (326)
228 PRK15134 microcin C ABC transp 84.8 1.5 3.2E-05 35.0 4.1 36 4-41 207-242 (529)
229 PRK10982 galactose/methyl gala 84.8 1.4 3.1E-05 34.8 3.9 38 3-42 183-220 (491)
230 COG4618 ArpD ABC-type protease 84.5 0.8 1.7E-05 37.6 2.4 36 3-41 521-556 (580)
231 PRK15439 autoinducer 2 ABC tra 84.3 1.4 3.1E-05 35.1 3.7 37 3-41 189-225 (510)
232 TIGR03258 PhnT 2-aminoethylpho 84.0 1.4 3.1E-05 33.9 3.5 36 4-41 189-224 (362)
233 TIGR02858 spore_III_AA stage I 83.7 0.94 2E-05 33.7 2.4 30 3-33 218-259 (270)
234 COG2274 SunT ABC-type bacterio 83.7 1.1 2.3E-05 37.8 2.9 37 2-41 656-692 (709)
235 TIGR01194 cyc_pep_trnsptr cycl 83.5 1.6 3.5E-05 35.1 3.8 30 3-35 520-549 (555)
236 PRK09700 D-allose transporter 83.4 2.1 4.6E-05 33.9 4.4 37 3-41 194-230 (510)
237 PRK09700 D-allose transporter 83.4 2.2 4.9E-05 33.8 4.5 36 3-40 458-493 (510)
238 TIGR03269 met_CoM_red_A2 methy 83.3 1.7 3.7E-05 34.5 3.8 36 4-41 478-513 (520)
239 COG4586 ABC-type uncharacteriz 83.0 1.9 4.2E-05 33.0 3.8 36 4-41 207-242 (325)
240 PRK13642 cbiO cobalt transport 82.8 2.3 4.9E-05 31.1 4.1 35 4-41 191-225 (277)
241 PRK10535 macrolide transporter 82.8 2 4.2E-05 35.5 4.1 36 3-41 193-228 (648)
242 TIGR02211 LolD_lipo_ex lipopro 82.2 1.7 3.6E-05 30.4 3.1 29 4-35 192-220 (221)
243 PRK10522 multidrug transporter 81.8 2 4.3E-05 34.4 3.7 34 3-39 499-532 (547)
244 PRK11308 dppF dipeptide transp 81.8 2.5 5.3E-05 32.0 4.0 36 4-41 205-240 (327)
245 PRK15093 antimicrobial peptide 81.5 3 6.5E-05 31.5 4.4 36 4-41 209-244 (330)
246 TIGR01257 rim_protein retinal- 81.3 2 4.3E-05 40.6 3.9 43 3-51 1109-1151(2272)
247 PRK14254 phosphate ABC transpo 81.3 2.6 5.7E-05 31.1 4.0 36 4-41 229-265 (285)
248 PRK15439 autoinducer 2 ABC tra 81.2 2.9 6.4E-05 33.3 4.4 37 3-41 452-488 (510)
249 TIGR03269 met_CoM_red_A2 methy 80.8 2.7 5.8E-05 33.4 4.1 36 4-41 219-254 (520)
250 COG1127 Ttg2A ABC-type transpo 80.5 3 6.5E-05 31.2 4.0 36 4-41 196-231 (263)
251 PRK11288 araG L-arabinose tran 80.4 2.7 5.8E-05 33.3 4.0 35 3-39 189-223 (501)
252 COG4987 CydC ABC-type transpor 80.3 2.5 5.4E-05 34.9 3.8 37 2-41 521-557 (573)
253 PRK10584 putative ABC transpor 80.3 2.7 5.7E-05 29.5 3.6 30 4-36 197-226 (228)
254 KOG0054 Multidrug resistance-a 80.2 2.2 4.8E-05 38.6 3.7 38 1-41 690-727 (1381)
255 TIGR00957 MRP_assoc_pro multi 80.0 2.7 5.9E-05 38.1 4.3 36 3-41 811-846 (1522)
256 PRK10261 glutathione transport 79.8 2.6 5.7E-05 34.6 3.8 36 4-41 514-549 (623)
257 PRK14264 phosphate ABC transpo 78.9 3.5 7.5E-05 30.7 4.0 36 4-41 249-285 (305)
258 PRK15134 microcin C ABC transp 78.2 3.9 8.5E-05 32.6 4.3 35 4-40 476-510 (529)
259 TIGR01257 rim_protein retinal- 78.2 3.1 6.7E-05 39.4 4.1 45 3-53 2119-2163(2272)
260 TIGR02633 xylG D-xylose ABC tr 78.0 4.4 9.6E-05 32.0 4.5 37 3-41 452-488 (500)
261 PTZ00243 ABC transporter; Prov 77.9 3.6 7.8E-05 37.5 4.4 36 3-41 831-866 (1560)
262 PRK15079 oligopeptide ABC tran 77.6 4.6 0.0001 30.6 4.4 36 4-41 212-247 (331)
263 PRK00349 uvrA excinuclease ABC 77.1 4.6 0.0001 35.2 4.6 37 3-41 882-923 (943)
264 TIGR00630 uvra excinuclease AB 76.9 3.5 7.7E-05 35.8 3.9 37 3-41 880-921 (924)
265 PRK11288 araG L-arabinose tran 76.5 5 0.00011 31.8 4.5 38 3-42 445-482 (501)
266 PRK10908 cell division protein 76.2 3.8 8.3E-05 28.7 3.4 30 3-34 186-215 (222)
267 PRK10982 galactose/methyl gala 76.2 5.3 0.00012 31.5 4.5 37 3-41 440-476 (491)
268 TIGR01271 CFTR_protein cystic 75.4 4.3 9.2E-05 36.8 4.1 36 3-41 597-632 (1490)
269 PRK09544 znuC high-affinity zi 74.4 5.5 0.00012 28.8 3.9 35 4-41 171-205 (251)
270 PRK15064 ABC transporter ATP-b 74.3 4.8 0.0001 32.2 3.8 36 4-41 202-238 (530)
271 PRK00635 excinuclease ABC subu 74.2 5 0.00011 37.3 4.3 37 3-41 527-568 (1809)
272 cd03280 ABC_MutS2 MutS2 homolo 73.3 3.8 8.3E-05 28.4 2.8 34 3-39 140-173 (200)
273 TIGR00630 uvra excinuclease AB 72.6 6.7 0.00014 34.2 4.5 37 3-41 538-579 (924)
274 cd03222 ABC_RNaseL_inhibitor T 70.2 11 0.00024 26.1 4.5 36 4-41 122-159 (177)
275 COG1118 CysA ABC-type sulfate/ 69.0 8.4 0.00018 29.9 3.9 34 6-41 190-223 (345)
276 cd03237 ABC_RNaseL_inhibitor_d 66.5 16 0.00034 26.4 4.8 51 4-57 166-218 (246)
277 PRK10261 glutathione transport 66.5 7.7 0.00017 31.8 3.5 36 4-41 219-254 (623)
278 PRK00349 uvrA excinuclease ABC 66.0 11 0.00024 32.9 4.5 36 3-41 540-581 (943)
279 PRK15064 ABC transporter ATP-b 65.9 9.7 0.00021 30.4 3.9 34 5-40 486-520 (530)
280 COG1122 CbiO ABC-type cobalt t 64.6 9.5 0.00021 27.8 3.4 36 4-41 189-224 (235)
281 COG0396 sufC Cysteine desulfur 64.5 10 0.00022 28.3 3.5 46 3-57 193-240 (251)
282 cd03275 ABC_SMC1_euk Eukaryoti 60.6 11 0.00023 27.1 3.0 27 4-32 209-235 (247)
283 KOG0054 Multidrug resistance-a 60.3 13 0.00027 34.0 3.9 36 3-41 1323-1358(1381)
284 PRK10636 putative ABC transpor 60.2 13 0.00028 30.7 3.7 34 6-41 479-513 (638)
285 cd03240 ABC_Rad50 The catalyti 60.0 12 0.00027 26.1 3.2 28 4-33 173-200 (204)
286 PTZ00265 multidrug resistance 59.9 14 0.00031 33.7 4.2 37 3-41 1408-1448(1466)
287 COG0410 LivF ABC-type branched 59.1 15 0.00032 27.2 3.5 36 4-41 187-222 (237)
288 cd03236 ABC_RNaseL_inhibitor_d 57.8 10 0.00022 27.6 2.5 36 3-41 188-223 (255)
289 COG1129 MglA ABC-type sugar tr 54.9 19 0.00042 29.3 3.9 32 3-36 450-481 (500)
290 KOG0055 Multidrug/pheromone ex 52.5 18 0.00038 32.7 3.5 37 2-41 536-572 (1228)
291 COG1125 OpuBA ABC-type proline 51.9 29 0.00064 26.5 4.2 36 4-41 186-221 (309)
292 PF00837 T4_deiodinase: Iodoth 51.6 15 0.00032 27.2 2.5 34 7-41 186-220 (237)
293 cd03279 ABC_sbcCD SbcCD and ot 51.0 23 0.0005 24.7 3.4 28 4-32 183-210 (213)
294 PRK11819 putative ABC transpor 50.8 25 0.00054 28.4 3.9 35 5-41 211-246 (556)
295 COG0444 DppD ABC-type dipeptid 50.7 42 0.00091 25.9 4.9 37 3-41 203-239 (316)
296 PRK11819 putative ABC transpor 50.7 28 0.0006 28.1 4.2 33 6-39 494-527 (556)
297 PTZ00265 multidrug resistance 50.5 22 0.00048 32.5 3.9 26 3-30 629-654 (1466)
298 cd03285 ABC_MSH2_euk MutS2 hom 48.6 18 0.00039 25.8 2.6 34 3-39 142-175 (222)
299 COG4604 CeuD ABC-type enteroch 48.4 27 0.00059 25.9 3.4 36 4-41 186-221 (252)
300 PRK00635 excinuclease ABC subu 48.3 26 0.00056 32.9 3.9 37 3-41 861-902 (1809)
301 TIGR03719 ABC_ABC_ChvD ATP-bin 47.4 25 0.00055 28.3 3.5 34 5-39 491-525 (552)
302 TIGR03719 ABC_ABC_ChvD ATP-bin 47.1 27 0.00058 28.1 3.6 35 5-41 209-244 (552)
303 TIGR00954 3a01203 Peroxysomal 46.9 18 0.0004 29.9 2.6 28 4-33 629-656 (659)
304 COG1136 SalX ABC-type antimicr 46.8 31 0.00066 25.2 3.5 28 3-33 192-219 (226)
305 PLN03073 ABC transporter F fam 46.0 29 0.00063 29.3 3.7 33 5-39 675-708 (718)
306 cd03241 ABC_RecN RecN ATPase i 45.8 17 0.00037 26.6 2.1 28 3-32 222-249 (276)
307 COG4988 CydD ABC-type transpor 42.3 36 0.00078 28.3 3.6 37 2-41 503-539 (559)
308 PRK10938 putative molybdenum t 41.8 39 0.00084 26.6 3.7 32 5-38 453-485 (490)
309 PRK10247 putative ABC transpor 41.6 29 0.00062 24.3 2.7 25 4-30 188-212 (225)
310 cd03272 ABC_SMC3_euk Eukaryoti 41.0 38 0.00082 23.8 3.2 25 3-29 210-234 (243)
311 COG4148 ModC ABC-type molybdat 40.8 30 0.00065 26.9 2.8 33 8-41 182-214 (352)
312 PHA02562 46 endonuclease subun 40.6 27 0.00058 27.8 2.6 28 3-32 526-553 (562)
313 PRK04296 thymidine kinase; Pro 40.6 41 0.00088 23.2 3.3 37 3-41 105-150 (190)
314 KOG0055 Multidrug/pheromone ex 39.9 34 0.00074 31.0 3.3 36 3-41 1174-1209(1228)
315 COG4138 BtuD ABC-type cobalami 39.7 19 0.00042 26.3 1.5 38 3-42 181-218 (248)
316 COG0411 LivG ABC-type branched 38.3 15 0.00033 27.4 0.8 36 4-41 200-235 (250)
317 PF09664 DUF2399: Protein of u 36.7 31 0.00066 23.5 2.1 67 3-73 40-106 (152)
318 PLN03073 ABC transporter F fam 36.4 63 0.0014 27.4 4.3 35 4-40 391-426 (718)
319 KOG0058 Peptide exporter, ABC 36.4 52 0.0011 28.1 3.7 36 3-41 652-687 (716)
320 COG1129 MglA ABC-type sugar tr 36.0 69 0.0015 26.3 4.3 36 3-40 194-229 (500)
321 COG1119 ModF ABC-type molybden 35.0 40 0.00087 25.3 2.6 34 4-39 223-256 (257)
322 COG4559 ABC-type hemin transpo 34.8 25 0.00055 26.2 1.5 36 4-41 191-226 (259)
323 COG4175 ProV ABC-type proline/ 33.3 70 0.0015 25.3 3.7 36 4-41 215-250 (386)
324 cd03274 ABC_SMC4_euk Eukaryoti 31.8 54 0.0012 23.1 2.8 26 3-30 179-204 (212)
325 cd03015 PRX_Typ2cys Peroxiredo 31.1 1.4E+02 0.003 19.9 4.7 28 11-38 98-136 (173)
326 COG3845 ABC-type uncharacteriz 31.1 69 0.0015 26.3 3.5 35 3-39 189-223 (501)
327 COG1137 YhbG ABC-type (unclass 30.7 64 0.0014 23.9 3.0 36 4-41 189-224 (243)
328 PRK11147 ABC transporter ATPas 30.5 72 0.0016 26.3 3.7 34 5-40 204-238 (635)
329 TIGR00537 hemK_rel_arch HemK-r 27.9 72 0.0016 21.4 2.8 30 27-57 129-158 (179)
330 cd03239 ABC_SMC_head The struc 27.4 64 0.0014 22.1 2.5 25 4-30 148-172 (178)
331 COG4607 CeuA ABC-type enteroch 27.2 49 0.0011 25.5 2.0 30 25-59 198-227 (320)
332 TIGR00634 recN DNA repair prot 26.8 58 0.0013 26.5 2.5 26 3-30 492-517 (563)
333 PF09201 SRX: SRX; InterPro: 26.7 54 0.0012 22.6 1.9 17 21-37 1-17 (148)
334 PRK13409 putative ATPase RIL; 26.2 79 0.0017 26.0 3.2 50 4-57 504-556 (590)
335 PRK10636 putative ABC transpor 25.7 1.1E+02 0.0023 25.4 3.9 34 5-40 197-231 (638)
336 PF04648 MF_alpha: Yeast matin 24.7 27 0.00059 14.3 0.1 10 26-36 4-13 (13)
337 COG2874 FlaH Predicted ATPases 24.1 52 0.0011 24.4 1.6 13 3-15 157-169 (235)
338 PRK13695 putative NTPase; Prov 23.9 87 0.0019 20.9 2.6 34 3-39 125-158 (174)
339 COG1135 AbcC ABC-type metal io 23.0 1.1E+02 0.0024 23.9 3.2 36 4-41 192-227 (339)
340 COG1124 DppF ABC-type dipeptid 22.9 1.3E+02 0.0028 22.6 3.5 34 6-41 194-227 (252)
341 cd01131 PilT Pilus retraction 22.8 42 0.00091 23.3 0.9 26 3-30 98-123 (198)
342 KOG0056 Heavy metal exporter H 22.3 78 0.0017 26.7 2.4 36 3-41 722-757 (790)
343 COG3842 PotA ABC-type spermidi 21.1 1.3E+02 0.0028 23.5 3.3 36 4-41 187-222 (352)
344 TIGR02788 VirB11 P-type DNA tr 21.0 41 0.00088 25.1 0.5 34 5-41 244-277 (308)
345 PF10281 Ish1: Putative stress 20.2 1.4E+02 0.0031 15.1 2.7 28 45-74 7-34 (38)
346 cd07268 Glo_EDI_BRP_like_4 Thi 20.2 77 0.0017 21.9 1.7 15 1-15 33-48 (149)
347 COG4172 ABC-type uncharacteriz 20.2 72 0.0016 26.1 1.8 24 17-41 489-512 (534)
348 KOG0186 Proline oxidase [Amino 20.2 59 0.0013 26.6 1.3 34 16-53 436-474 (506)
No 1
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=3.7e-28 Score=205.17 Aligned_cols=94 Identities=33% Similarity=0.492 Sum_probs=87.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhhCCCCCCCCCCCChhhhHHhhcCCCCCCCc
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQH 82 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~i~G~~~~p~~~npad~~~dv~~~~~~~~~ 82 (98)
-||||+|||||||.+||+.||+|++|++||++||+|+.+++|+.+++||+++-|. +|++..|||||++|+++...+...
T Consensus 979 tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~-~~~~~~NPA~~mLevi~~~~~~~~ 1057 (1391)
T KOG0065|consen 979 TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGV-KCISDENPAEWMLEVIGAGAEASL 1057 (1391)
T ss_pred cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCc-cCCCCCChHHHHHhhccccccccc
Confidence 4899999999999999999999999999999999999999999999999996556 699988999999999999888877
Q ss_pred hhcHHHHHhhccccC
Q 037141 83 AFDLCQDVKIFAFID 97 (98)
Q Consensus 83 ~~~~~~~~~~S~~~~ 97 (98)
..||+++|++|..|.
T Consensus 1058 ~~D~a~~w~~S~e~k 1072 (1391)
T KOG0065|consen 1058 SVDFAEIWKNSEEYK 1072 (1391)
T ss_pred CccHHHHHhccHHHH
Confidence 889999999998774
No 2
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.86 E-value=3.9e-22 Score=160.73 Aligned_cols=68 Identities=21% Similarity=0.314 Sum_probs=64.1
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhhCCCCCCCCCCCChhhhHHhhcCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPS 77 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~i~G~~~~p~~~npad~~~dv~~~~ 77 (98)
+||||||||||||+++|++||++++|++ |++||+|++. ++.+||++ .|+ +||++.||+||++|+++..
T Consensus 219 ~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~G~~~----~~~~ff~~-~G~-~~P~~~Npadf~l~l~s~~ 286 (613)
T KOG0061|consen 219 SGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYSGSPR----ELLEFFSS-LGF-PCPELENPADFLLDLLSVD 286 (613)
T ss_pred CCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEecCHH----HHHHHHHh-CCC-CCCCcCChHHHHHHHHccC
Confidence 5999999999999999999999999998 8999999987 79999999 699 5999999999999998864
No 3
>PLN03140 ABC transporter G family member; Provisional
Probab=99.81 E-value=8.3e-20 Score=157.89 Aligned_cols=94 Identities=38% Similarity=0.603 Sum_probs=83.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhhCCCCCCCCCCCChhhhHHhhcCCCCCCCc
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQH 82 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~i~G~~~~p~~~npad~~~dv~~~~~~~~~ 82 (98)
+|+||||++|||+.+++++||++++|++||+++|+|+.+++++++++||+++.|+++||++.|||||++|+++...+.+.
T Consensus 1068 ~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~ 1147 (1470)
T PLN03140 1068 TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKL 1147 (1470)
T ss_pred CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccc
Confidence 47999999999999999999999999987999999999888889999999953665699999999999999887655555
Q ss_pred hhcHHHHHhhcccc
Q 037141 83 AFDLCQDVKIFAFI 96 (98)
Q Consensus 83 ~~~~~~~~~~S~~~ 96 (98)
..||++.|++|+.|
T Consensus 1148 ~~d~~~~~~~s~~~ 1161 (1470)
T PLN03140 1148 GIDFAEHYKSSSLY 1161 (1470)
T ss_pred cchHHHHHhccHHH
Confidence 67999999999865
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.78 E-value=3.8e-19 Score=153.25 Aligned_cols=93 Identities=24% Similarity=0.420 Sum_probs=82.3
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhhCCCCCCCCCCCChhhhHHhhcCCCCCCCc
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQH 82 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~i~G~~~~p~~~npad~~~dv~~~~~~~~~ 82 (98)
+|+|||+++|||+..++++||++++|++||+++|+|+++++++++++||++ .|+++||++.|||||++|+++...+...
T Consensus 951 ~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~-~G~~~~p~~~NpAd~~ldvi~~~~~~~~ 1029 (1394)
T TIGR00956 951 HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEK-HGAPKCPEDANPAEWMLEVIGAAPGAHA 1029 (1394)
T ss_pred cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHh-cCCCCCCCCCCHHHHHHHHhhcccccch
Confidence 589999999999999999999999999867999999998877899999999 6964699999999999999887655444
Q ss_pred hhcHHHHHhhcccc
Q 037141 83 AFDLCQDVKIFAFI 96 (98)
Q Consensus 83 ~~~~~~~~~~S~~~ 96 (98)
..+|.+.|++|+.+
T Consensus 1030 ~~~~~~~~~~s~~~ 1043 (1394)
T TIGR00956 1030 NQDYHEVWRNSSEY 1043 (1394)
T ss_pred hccHHHHHhcCHHH
Confidence 56899999988654
No 5
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.69 E-value=5.5e-17 Score=130.59 Aligned_cols=87 Identities=18% Similarity=0.307 Sum_probs=74.0
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhhCCCCCCCCCCCChhhhHHhhcCCCCCCC-
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAEGQ- 81 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~i~G~~~~p~~~npad~~~dv~~~~~~~~- 81 (98)
+++|||+++|||+.+++++||++++|++ |+++|.|+.. ++.+||++ .|+ +||++.|||||++++++...+..
T Consensus 215 ~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~~----~~~~~f~~-~g~-~~p~~~n~ad~~~~~~~~~~~~~~ 287 (617)
T TIGR00955 215 KGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSPD----QAVPFFSD-LGH-PCPENYNPADFYVQVLAVIPGSEN 287 (617)
T ss_pred CCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCHH----HHHHHHHH-cCC-CCCCCCChHHHHHHHhhcCccccc
Confidence 5899999999999999999999999996 8999999987 79999999 699 69999999999999987654322
Q ss_pred ----chhcHHHHHhhcccc
Q 037141 82 ----HAFDLCQDVKIFAFI 96 (98)
Q Consensus 82 ----~~~~~~~~~~~S~~~ 96 (98)
...++.+.|++|+++
T Consensus 288 ~~~~~~~~~~~~~~~s~~~ 306 (617)
T TIGR00955 288 ESRERIEKICDSFAVSDIG 306 (617)
T ss_pred chHHHHHHHHHHHhcchhh
Confidence 124677778776554
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=99.68 E-value=7.7e-17 Score=139.71 Aligned_cols=87 Identities=20% Similarity=0.289 Sum_probs=75.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhhCCCCCCCCCCCChhhhHHhhcCCCCC---
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAE--- 79 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~i~G~~~~p~~~npad~~~dv~~~~~~--- 79 (98)
.++|||+++|||+.+++++||++++|++ |+++|+|+.. ++.+||++ +|+ +||++.|||||++++++....
T Consensus 386 ~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ivy~G~~~----~~~~yF~~-lGf-~cP~~~n~ADFl~~v~s~~~~~~~ 458 (1470)
T PLN03140 386 TEATVLMSLLQPAPETFDLFDDIILLSE-GQIVYQGPRD----HILEFFES-CGF-KCPERKGTADFLQEVTSKKDQEQY 458 (1470)
T ss_pred cCCEEEEEecCCCHHHHHHhheEEEeeC-ceEEEeCCHH----HHHHHHHH-cCC-CCCCCCChHHHHHHhcCchhhhhh
Confidence 4789999999999999999999999997 8999999976 79999999 699 699999999999999886321
Q ss_pred ------C---CchhcHHHHHhhcccc
Q 037141 80 ------G---QHAFDLCQDVKIFAFI 96 (98)
Q Consensus 80 ------~---~~~~~~~~~~~~S~~~ 96 (98)
. .+..+|++.|++|..+
T Consensus 459 ~~~~~~p~~~~~~~~~~~~~~~s~~~ 484 (1470)
T PLN03140 459 WADRNKPYRYISVSEFAERFKSFHVG 484 (1470)
T ss_pred hhccCCccccCCHHHHHHHHHhcHHH
Confidence 0 2357899999998654
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.67 E-value=1.6e-16 Score=137.16 Aligned_cols=87 Identities=16% Similarity=0.183 Sum_probs=76.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhhCCCCCCCCCCCChhhhHHhhcCCCC----
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSA---- 78 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~i~G~~~~p~~~npad~~~dv~~~~~---- 78 (98)
.|+|||+++|||+.+++++||++++|.+ |+++|+|+.. ++.+||++ +|+ +||++.|||||++++++...
T Consensus 259 ~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~~----~~~~yF~~-lG~-~~p~~~n~aDfl~~~~~~~~~~~~ 331 (1394)
T TIGR00956 259 LDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPAD----KAKQYFEK-MGF-KCPDRQTTADFLTSLTSPAERQIK 331 (1394)
T ss_pred cCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCHH----HHHHHHHH-cCC-CCCCCCChHHHHHhccChhhhhcc
Confidence 3799999999999999999999999997 8999999976 79999999 699 69999999999999987542
Q ss_pred ------CCCchhcHHHHHhhcccc
Q 037141 79 ------EGQHAFDLCQDVKIFAFI 96 (98)
Q Consensus 79 ------~~~~~~~~~~~~~~S~~~ 96 (98)
..+...+|++.|++|+.|
T Consensus 332 ~~~e~~~~~~~~~~~~~~~~s~~~ 355 (1394)
T TIGR00956 332 PGYEKKVPRTPQEFETYWRNSPEY 355 (1394)
T ss_pred ccccccCCCCHHHHHHHHHcCHHH
Confidence 123457899999999765
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.63 E-value=5.9e-16 Score=131.93 Aligned_cols=89 Identities=16% Similarity=0.149 Sum_probs=77.0
Q ss_pred CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhhCCCCCCCCCCCChhhhHHhhcCCCCC--
Q 037141 2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPSAE-- 79 (98)
Q Consensus 2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~i~G~~~~p~~~npad~~~dv~~~~~~-- 79 (98)
+-+.|++++|+||++++|++||+|+||+. |++||+||.. ++.+||++ +|+ .||+++++|||+.++++....
T Consensus 309 ~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~d----~~~~yFe~-~Gf-~cP~r~~~ADfLt~vts~k~~~~ 381 (1391)
T KOG0065|consen 309 ITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPRD----EVLPYFED-MGF-KCPPRKGTADFLTEVTSKKDQEQ 381 (1391)
T ss_pred hhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccHH----HHHHHHHh-cCc-cCCCccCHHHHHHHhhcCccccc
Confidence 34789999999999999999999999998 9999999987 79999999 799 699999999999999983321
Q ss_pred ---------CC-chhcHHHHHhhccccC
Q 037141 80 ---------GQ-HAFDLCQDVKIFAFID 97 (98)
Q Consensus 80 ---------~~-~~~~~~~~~~~S~~~~ 97 (98)
.. ...+|++.|++|+.|.
T Consensus 382 ~~~~~~~~~~~~~~~ef~~~~~~s~~~~ 409 (1391)
T KOG0065|consen 382 YWNKRSKPYPYTSVSEFAEYFLNSEDYA 409 (1391)
T ss_pred cccccCCCcccCCHHHHHHHHhcchhhH
Confidence 11 2378999999988763
No 9
>PLN03211 ABC transporter G-25; Provisional
Probab=99.61 E-value=1.5e-15 Score=123.43 Aligned_cols=68 Identities=16% Similarity=0.296 Sum_probs=63.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhhCCCCCCCCCCCChhhhHHhhcCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQFTSPS 77 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~i~G~~~~p~~~npad~~~dv~~~~ 77 (98)
+++|||+++|||+.+++++||++++|++ |+++|.|+.. ++.+||++ .|+ +||.+.|||||++|+++..
T Consensus 255 ~g~TvI~~sH~~~~~i~~~~D~iilL~~-G~iv~~G~~~----~~~~~f~~-~G~-~~P~~~NpADf~ldv~~~~ 322 (659)
T PLN03211 255 KGKTIVTSMHQPSSRVYQMFDSVLVLSE-GRCLFFGKGS----DAMAYFES-VGF-SPSFPMNPADFLLDLANGV 322 (659)
T ss_pred CCCEEEEEecCCCHHHHHhhceEEEecC-CcEEEECCHH----HHHHHHHH-CCC-CCCCCCCHHHHHHHHcCcc
Confidence 5899999999999999999999999997 8999999986 79999999 699 5999999999999998764
No 10
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.0079 Score=41.79 Aligned_cols=36 Identities=31% Similarity=0.513 Sum_probs=31.1
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR 38 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G 38 (98)
+++|||++.|++...+...+|++++|..+|++++.|
T Consensus 157 ~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 157 SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 478999999999877888999999998548999876
No 11
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.16 E-value=0.01 Score=42.08 Aligned_cols=35 Identities=11% Similarity=0.262 Sum_probs=31.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR 38 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G 38 (98)
++.|||++.|++..++.+.+|++++|.. |++++.|
T Consensus 192 ~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 192 RNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred CCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 3689999999999999999999999997 8998765
No 12
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.11 E-value=0.012 Score=41.09 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=31.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR 38 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G 38 (98)
+++|||++-|++..++.+..|++++|.. |++++.|
T Consensus 160 ~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 160 TGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred CCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 4789999999999999999999999997 8988765
No 13
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.08 E-value=0.0085 Score=44.78 Aligned_cols=43 Identities=19% Similarity=0.035 Sum_probs=33.8
Q ss_pred ceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhh
Q 037141 5 NCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEG 53 (98)
Q Consensus 5 ~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~ 53 (98)
+||++|.|++.. +..++|+|++|.+ |++++.|+.. .+...+..
T Consensus 188 ~tvlissH~l~e-~~~~~d~v~il~~-G~~~~~g~~~----~l~~~~~~ 230 (293)
T COG1131 188 VTILLSTHILEE-AEELCDRVIILND-GKIIAEGTPE----ELKEKFGG 230 (293)
T ss_pred cEEEEeCCcHHH-HHHhCCEEEEEeC-CEEEEeCCHH----HHHHhhcc
Confidence 799999998764 5666999999997 9999999765 45555443
No 14
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.18 E-value=0.032 Score=39.46 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=36.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhh
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEG 53 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~ 53 (98)
+.+++|++-|.+. .+..+.|++++|.. |+.++.|+.. ++..+++.
T Consensus 152 ~~~~ii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~----~~~~~~~~ 196 (213)
T PRK15177 152 QQKGLIVLTHNPR-LIKEHCHAFGVLLH-GKITMCEDLA----QATALFEQ 196 (213)
T ss_pred hCCcEEEEECCHH-HHHHhcCeeEEEEC-CeEEEeCCHH----HHHHHHHH
Confidence 5678999999886 56678999999997 8999999987 56666554
No 15
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.14 E-value=0.041 Score=38.50 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=30.2
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR 38 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G 38 (98)
+.|+|+++|+...++.+..|++++|.. |++++.|
T Consensus 169 ~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~g 202 (202)
T cd03233 169 KTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYYG 202 (202)
T ss_pred CCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEecC
Confidence 568889999999999999999999997 8998765
No 16
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.06 E-value=0.04 Score=40.74 Aligned_cols=58 Identities=9% Similarity=0.067 Sum_probs=41.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHH---HHhhhhCCCCCCCCCCCChhh
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKL---IECFEGTSGVRKIKENYNPAT 68 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~---~~yf~~i~G~~~~p~~~npad 68 (98)
++.|||++.|.+ ..+..+.|++++|.. |++++.|++. ++ ...++. .|. .+|.....++
T Consensus 193 ~g~til~vtHd~-~~~~~~~dri~~l~~-G~i~~~g~~~----~~~~~~~~~~~-~~~-~~p~~~~~~~ 253 (288)
T PRK13643 193 SGQTVVLVTHLM-DDVADYADYVYLLEK-GHIISCGTPS----DVFQEVDFLKA-HEL-GVPKATHFAD 253 (288)
T ss_pred CCCEEEEEecCH-HHHHHhCCEEEEEEC-CEEEEECCHH----HHHcCHHHHHH-cCC-CCChHHHHHH
Confidence 378999999998 467788999999997 8999999865 22 234455 466 3555443333
No 17
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.02 E-value=0.043 Score=38.29 Aligned_cols=36 Identities=8% Similarity=0.061 Sum_probs=30.2
Q ss_pred CCceEEEEecCCcHHHHh-hccceEeecCCCeEEEecCC
Q 037141 3 KTNCSNTILSSSSCSRLF-NLKDLMLMKRGGKIIYFREL 40 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~-~FD~lllL~~gG~~vy~G~~ 40 (98)
+++|||++-|++. .+.. ..|++++|.+ |+.+..|+.
T Consensus 153 ~~~tiii~sh~~~-~~~~~~~d~i~~l~~-G~i~~~~~~ 189 (200)
T cd03217 153 EGKSVLIITHYQR-LLDYIKPDRVHVLYD-GRIVKSGDK 189 (200)
T ss_pred CCCEEEEEecCHH-HHHHhhCCEEEEEEC-CEEEEEccH
Confidence 3789999999987 4555 6999999997 899999854
No 18
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.36 E-value=0.067 Score=38.40 Aligned_cols=37 Identities=5% Similarity=0.034 Sum_probs=31.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++.|++. .+.+..|++++|.. |+.++.|+.+
T Consensus 194 ~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~~~~~~~~~ 230 (250)
T PRK14245 194 KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GEMVEYDDTK 230 (250)
T ss_pred cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEEECCHH
Confidence 4689999999888 46788999999997 8999999754
No 19
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.35 E-value=0.074 Score=37.82 Aligned_cols=37 Identities=5% Similarity=-0.020 Sum_probs=31.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|++. ++.+..|++++|.+ |+.++.|+.+
T Consensus 186 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 222 (237)
T PRK11614 186 QGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVLEDTGD 222 (237)
T ss_pred CCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEeeCCHH
Confidence 4789999999874 67788999999997 8999999764
No 20
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=94.16 E-value=0.071 Score=39.89 Aligned_cols=37 Identities=8% Similarity=-0.102 Sum_probs=32.5
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|+.. ++-.+.|++++|.. |+.++.|++.
T Consensus 187 ~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~~~ 223 (306)
T PRK13537 187 RGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGAPH 223 (306)
T ss_pred CCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 4789999999987 67788999999997 8999999865
No 21
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.06 E-value=0.089 Score=37.77 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=31.7
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++.|++. .+.+..|++++|.. |+++..|+..
T Consensus 197 ~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 233 (251)
T PRK14244 197 KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIVEYNTTQ 233 (251)
T ss_pred cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEeCCHH
Confidence 4789999999988 67788999999997 8999998643
No 22
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.00 E-value=0.094 Score=38.48 Aligned_cols=36 Identities=8% Similarity=0.008 Sum_probs=31.8
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|++. .+....|++++|.+ |+.++.|+..
T Consensus 188 g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~g~~~ 223 (277)
T PRK13652 188 GMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAYGTVE 223 (277)
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEECCHH
Confidence 789999999987 67788999999997 8999999765
No 23
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.95 E-value=0.094 Score=39.03 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=32.3
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||+++|-+.- .+..-|++++|++ |+++..|.+.
T Consensus 188 ~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a~G~p~ 224 (258)
T COG1120 188 KGLTVVMVLHDLNL-AARYADHLILLKD-GKIVAQGTPE 224 (258)
T ss_pred cCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEeecCcc
Confidence 58999999998865 4567899999997 9999999977
No 24
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.85 E-value=0.091 Score=36.64 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=28.5
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR 38 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G 38 (98)
+.|||++-|++. .+....|++++|.. |+.+.+|
T Consensus 181 ~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 181 GTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred CCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 789999999985 66778999999987 8998876
No 25
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.77 E-value=0.1 Score=37.10 Aligned_cols=36 Identities=11% Similarity=0.025 Sum_probs=31.1
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||++-|.+. .+..+.|++++|.. |+.++.|+..
T Consensus 187 ~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 222 (235)
T cd03261 187 GLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGTPE 222 (235)
T ss_pred CcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEEecCHH
Confidence 789999999987 57788999999997 8999998753
No 26
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.75 E-value=0.11 Score=36.67 Aligned_cols=35 Identities=6% Similarity=0.038 Sum_probs=30.4
Q ss_pred ceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 5 NCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 5 ~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+|||++.|.+. .+....|++++|.. |++++.|+..
T Consensus 191 ~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 225 (227)
T cd03260 191 YTIVIVTHNMQ-QAARVADRTAFLLN-GRLVEFGPTE 225 (227)
T ss_pred cEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEecCcc
Confidence 78999999987 67788999999997 8999998764
No 27
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.71 E-value=0.1 Score=36.92 Aligned_cols=37 Identities=5% Similarity=0.007 Sum_probs=31.5
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|.+. .+..+.|++++|.. |+.+..|+..
T Consensus 192 ~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 228 (236)
T cd03219 192 RGITVLLVEHDMD-VVMSLADRVTVLDQ-GRVIAEGTPD 228 (236)
T ss_pred CCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEeecCHH
Confidence 4789999999987 57788999999997 8999998753
No 28
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.63 E-value=0.11 Score=38.41 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=31.9
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|.+. .+..+.|++++|.+ |++++.|+..
T Consensus 196 g~tviiitHd~~-~~~~~~drv~~l~~-G~i~~~g~~~ 231 (290)
T PRK13634 196 GLTTVLVTHSME-DAARYADQIVVMHK-GTVFLQGTPR 231 (290)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 789999999987 67888999999996 9999999754
No 29
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.57 E-value=0.12 Score=36.32 Aligned_cols=37 Identities=8% Similarity=-0.053 Sum_probs=31.8
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++.|++. .+.+..|++++|.+ |+.+..|++.
T Consensus 173 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 173 QGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred CCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChh
Confidence 3689999999987 57788999999997 8999999865
No 30
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=93.55 E-value=0.12 Score=37.02 Aligned_cols=37 Identities=8% Similarity=-0.012 Sum_probs=31.5
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++.|.+. .+....|++++|.. |++++.|+..
T Consensus 196 ~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 232 (252)
T PRK14239 196 DDYTMLLVTRSMQ-QASRISDRTGFFLD-GDLIEYNDTK 232 (252)
T ss_pred hCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 4579999999876 67888999999997 8999999754
No 31
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.54 E-value=0.13 Score=36.38 Aligned_cols=37 Identities=8% Similarity=-0.069 Sum_probs=31.8
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|.+. .+..+.|++++|.. |+.+..|+..
T Consensus 182 ~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 218 (232)
T cd03218 182 RGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGTPE 218 (232)
T ss_pred CCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeCHH
Confidence 3789999999987 78888999999996 8999998754
No 32
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.50 E-value=0.12 Score=36.50 Aligned_cols=36 Identities=8% Similarity=-0.020 Sum_probs=30.8
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||++-|++. .+..+.|++++|.. |+++..|+..
T Consensus 191 ~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 226 (233)
T cd03258 191 GLTIVLITHEME-VVKRICDRVAVMEK-GEVVEEGTVE 226 (233)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 789999999975 67788999999986 8999998643
No 33
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.46 E-value=0.13 Score=38.26 Aligned_cols=37 Identities=8% Similarity=-0.091 Sum_probs=32.3
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|.+. ++..+.|++++|.+ |++++.|+..
T Consensus 173 ~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 209 (302)
T TIGR01188 173 EGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTPE 209 (302)
T ss_pred CCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 4789999999976 77888999999997 8999999764
No 34
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=93.37 E-value=0.13 Score=39.26 Aligned_cols=37 Identities=8% Similarity=-0.104 Sum_probs=32.8
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|... ++-++.|++++|.. |++++.|++.
T Consensus 221 ~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~~~ 257 (340)
T PRK13536 221 RGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGRPH 257 (340)
T ss_pred CCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 4789999999885 78889999999997 8999999865
No 35
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=93.35 E-value=0.14 Score=38.13 Aligned_cols=37 Identities=8% Similarity=-0.101 Sum_probs=32.5
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|.+. ++.++.|++++|.. |+.++.|+..
T Consensus 184 ~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 220 (303)
T TIGR01288 184 RGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGRPH 220 (303)
T ss_pred CCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 4789999999987 77788999999997 8999999765
No 36
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=93.34 E-value=0.14 Score=36.99 Aligned_cols=37 Identities=5% Similarity=0.011 Sum_probs=31.8
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|++. .+.+..|++++|.. |+.+..|+..
T Consensus 186 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 222 (256)
T TIGR03873 186 TGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAGPPR 222 (256)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEecCHH
Confidence 3789999999988 66788999999997 8999999754
No 37
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=93.32 E-value=0.11 Score=37.01 Aligned_cols=35 Identities=6% Similarity=0.114 Sum_probs=30.4
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFREL 40 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~ 40 (98)
++|||++-|.+. .+.+..|++++|.+ |+.+..|+.
T Consensus 165 ~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 165 RVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred CCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 789999999986 57788999999997 899988864
No 38
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.30 E-value=0.12 Score=38.41 Aligned_cols=38 Identities=11% Similarity=0.053 Sum_probs=32.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQ 42 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~ 42 (98)
.|-|||+++||--. ..+.+||++-|+. |++||-||..+
T Consensus 197 ~g~Tvi~nLH~vdl-A~~Y~~Riigl~~-G~ivfDg~~~e 234 (258)
T COG3638 197 DGITVIVNLHQVDL-AKKYADRIIGLKA-GRIVFDGPASE 234 (258)
T ss_pred cCCEEEEEechHHH-HHHHHhhheEecC-CcEEEeCChhh
Confidence 47899999999765 5678999999997 99999999873
No 39
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.30 E-value=0.16 Score=36.17 Aligned_cols=36 Identities=11% Similarity=0.033 Sum_probs=30.9
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||++.|++. .+.++.|++++|.. |+.+..|+..
T Consensus 180 ~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 215 (235)
T cd03299 180 GVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKPE 215 (235)
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 789999999984 46778999999997 8999998754
No 40
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=93.27 E-value=0.15 Score=36.26 Aligned_cols=36 Identities=11% Similarity=0.020 Sum_probs=31.3
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||++-|.+. ++....|++++|.. |+.+..|+..
T Consensus 176 ~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 211 (230)
T TIGR02770 176 GTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTVK 211 (230)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 789999999988 67788999999997 8999988643
No 41
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.25 E-value=0.17 Score=37.49 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=38.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhh
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEG 53 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~ 53 (98)
|++|||+.-|.+. .|-+..|++++|.. |++.+.|.++ +++++++.
T Consensus 196 ~~~tiv~VSHd~~-~I~~~Cd~~i~l~~-G~i~~~G~~~----~vi~~Y~~ 240 (249)
T COG1134 196 KNKTIVLVSHDLG-AIKQYCDRAIWLEH-GQIRMEGSPE----EVIPAYEE 240 (249)
T ss_pred cCCEEEEEECCHH-HHHHhcCeeEEEeC-CEEEEcCCHH----HHHHHHHH
Confidence 6788888777664 58899999999997 9999999987 67877776
No 42
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=93.24 E-value=0.13 Score=37.12 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=32.1
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|.+. .+.+..|++++|.. |+.+..|+..
T Consensus 187 ~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 223 (255)
T PRK11231 187 QGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQGTPE 223 (255)
T ss_pred CCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEcCHH
Confidence 4789999999887 77888999999997 8999998765
No 43
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.20 E-value=0.12 Score=36.74 Aligned_cols=36 Identities=11% Similarity=-0.003 Sum_probs=30.8
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++.|++. .+.++.|++++|.+ |+.+..|+..
T Consensus 196 ~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 231 (243)
T TIGR02315 196 GITVIINLHQVD-LAKKYADRIVGLKA-GEIVFDGAPS 231 (243)
T ss_pred CCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecCCHH
Confidence 689999999987 46788999999997 8999988754
No 44
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=93.16 E-value=0.15 Score=37.13 Aligned_cols=37 Identities=8% Similarity=0.008 Sum_probs=31.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++.|.+. .+.++.|++++|.. |+.+..|+..
T Consensus 211 ~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 247 (267)
T PRK14237 211 KNYTIIIVTHNMQ-QAARASDYTAFFYL-GDLIEYDKTR 247 (267)
T ss_pred cCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 4679999999988 58889999999997 8999999754
No 45
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=93.16 E-value=0.16 Score=36.12 Aligned_cols=37 Identities=8% Similarity=-0.012 Sum_probs=31.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++.|.+. .+..+.|++++|.. |++++.|+..
T Consensus 185 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 221 (240)
T PRK09493 185 EGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAEDGDPQ 221 (240)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeCCHH
Confidence 3789999999987 46678999999997 8999998754
No 46
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.16 E-value=0.14 Score=37.91 Aligned_cols=36 Identities=6% Similarity=0.092 Sum_probs=30.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|.+. .+. ..|++++|.. |+++++|++.
T Consensus 186 ~~~tii~isH~~~-~i~-~~dri~vl~~-G~i~~~g~~~ 221 (275)
T cd03289 186 ADCTVILSEHRIE-AML-ECQRFLVIEE-NKVRQYDSIQ 221 (275)
T ss_pred CCCEEEEEECCHH-HHH-hCCEEEEecC-CeEeecCCHH
Confidence 5789999999984 444 5999999997 8999999876
No 47
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.15 E-value=0.15 Score=37.64 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=31.4
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||++-|.+. .+.+..|++++|.. |++++.|+..
T Consensus 201 ~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 236 (289)
T PRK13645 201 KKRIIMVTHNMD-QVLRIADEVIVMHE-GKVISIGSPF 236 (289)
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 789999999987 67788999999997 8999998754
No 48
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=93.15 E-value=0.17 Score=35.92 Aligned_cols=36 Identities=8% Similarity=-0.041 Sum_probs=30.9
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|.+. .+.+..|++++|.+ |++++.|+..
T Consensus 180 ~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~~ 215 (232)
T PRK10771 180 QLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPTD 215 (232)
T ss_pred CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 789999999988 56678899999997 8999998743
No 49
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.12 E-value=0.14 Score=36.55 Aligned_cols=33 Identities=6% Similarity=0.083 Sum_probs=28.4
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR 38 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G 38 (98)
++|||++-|++. .+..+.|++++|.. |++++.|
T Consensus 204 ~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 204 GTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 789999999986 67788999999997 8988765
No 50
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.12 E-value=0.18 Score=35.80 Aligned_cols=36 Identities=11% Similarity=0.024 Sum_probs=31.2
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||++.|.+.. +..+.|++++|.. |+.++.|+..
T Consensus 195 ~~tii~~tH~~~~-~~~~~d~v~~l~~-G~i~~~~~~~ 230 (241)
T cd03256 195 GITVIVSLHQVDL-AREYADRIVGLKD-GRIVFDGPPA 230 (241)
T ss_pred CCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEeecCHH
Confidence 7899999999874 6778999999997 8999998754
No 51
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.12 E-value=0.16 Score=36.78 Aligned_cols=37 Identities=8% Similarity=-0.072 Sum_probs=31.6
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCC----CeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRG----GKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~g----G~~vy~G~~~ 41 (98)
++|||++.|++. .+.++.|++++|..| |++++.|++.
T Consensus 201 ~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~ 241 (261)
T PRK14258 201 ELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLTK 241 (261)
T ss_pred CCEEEEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCHH
Confidence 789999999985 688899999999853 8999999764
No 52
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.12 E-value=0.15 Score=36.47 Aligned_cols=37 Identities=8% Similarity=-0.015 Sum_probs=31.5
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|++. .+....|++++|.. |+++..|+..
T Consensus 193 ~~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 229 (249)
T PRK14253 193 KNYTIVIVTHSMQ-QARRISDRTAFFLM-GELVEHDDTQ 229 (249)
T ss_pred cCCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 3579999999986 68888999999997 8999998743
No 53
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.10 E-value=0.08 Score=39.85 Aligned_cols=37 Identities=8% Similarity=0.072 Sum_probs=32.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.|.|||.|-|+=. .+=++.|+|++|++ |+.|..|++.
T Consensus 179 ~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v~ 215 (300)
T COG4152 179 EGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVE 215 (300)
T ss_pred cCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccHH
Confidence 5899999999754 46789999999997 8999999987
No 54
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.10 E-value=0.15 Score=38.51 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=31.8
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|.+. .+....|++++|.. |+++..|+..
T Consensus 225 ~g~TiiivtHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 261 (320)
T PRK13631 225 NNKTVFVITHTME-HVLEVADEVIVMDK-GKILKTGTPY 261 (320)
T ss_pred CCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 4789999999977 56678999999997 8999999754
No 55
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.06 E-value=0.17 Score=36.28 Aligned_cols=37 Identities=11% Similarity=0.123 Sum_probs=31.1
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++.|++. .+....|++++|.+ |+.+..|+..
T Consensus 194 ~~~tili~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 230 (250)
T PRK14262 194 ENYTIVIVTHNIG-QAIRIADYIAFMYR-GELIEYGPTR 230 (250)
T ss_pred cCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 4689999999877 56788999999997 8999998753
No 56
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.05 E-value=0.17 Score=36.24 Aligned_cols=37 Identities=8% Similarity=0.015 Sum_probs=31.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++.|++. .+.+..|++++|.. |+.+..|+..
T Consensus 194 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 230 (250)
T PRK14247 194 KDMTIVLVTHFPQ-QAARISDYVAFLYK-GQIVEWGPTR 230 (250)
T ss_pred cCCEEEEEeCCHH-HHHHhcCEEEEEEC-CeEEEECCHH
Confidence 4689999999987 57778999999997 8999998753
No 57
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.02 E-value=0.15 Score=36.53 Aligned_cols=37 Identities=14% Similarity=0.017 Sum_probs=31.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++.|.+. .+....|++++|.. |+.+..|+..
T Consensus 197 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 233 (253)
T PRK14267 197 KEYTIVLVTHSPA-QAARVSDYVAFLYL-GKLIEVGPTR 233 (253)
T ss_pred hCCEEEEEECCHH-HHHhhCCEEEEEEC-CEEEEeCCHH
Confidence 4589999999987 57788999999997 8999998754
No 58
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.01 E-value=0.2 Score=35.70 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=30.7
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||++-|++. .+....|++++|.. |+.++.|+..
T Consensus 187 ~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 222 (239)
T cd03296 187 HVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVGTPD 222 (239)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecCHH
Confidence 789999999985 56778999999986 8999998753
No 59
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=92.99 E-value=0.15 Score=35.73 Aligned_cols=33 Identities=15% Similarity=-0.079 Sum_probs=27.7
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR 38 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G 38 (98)
++|||++.|.+. .+....|++++|.. |+.+..|
T Consensus 196 ~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 228 (228)
T cd03257 196 GLTLLFITHDLG-VVAKIADRVAVMYA-GKIVEEG 228 (228)
T ss_pred CCEEEEEeCCHH-HHHHhcCeEEEEeC-CEEEecC
Confidence 789999999986 56668999999997 8887654
No 60
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=92.96 E-value=0.15 Score=35.60 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=28.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR 38 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G 38 (98)
+++|||++.|.+. .+....|++++|.+ |+++..|
T Consensus 185 ~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 185 LGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred CCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 3789999999985 67788999999997 8887654
No 61
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.94 E-value=0.17 Score=36.99 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=31.0
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||++-|.+. .+..+.|++++|.. |+.+..|+..
T Consensus 211 g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 246 (269)
T cd03294 211 QKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTPE 246 (269)
T ss_pred CCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 789999999986 57788999999986 8999998743
No 62
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.94 E-value=0.15 Score=36.53 Aligned_cols=37 Identities=11% Similarity=0.012 Sum_probs=31.3
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++.|++. .+.+..|++++|.. |+++..|+..
T Consensus 195 ~~~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 231 (251)
T PRK14270 195 KEYTIVIVTHNMQ-QASRVSDYTAFFLM-GDLIEFNKTE 231 (251)
T ss_pred hCCeEEEEEcCHH-HHHHhcCEEEEEEC-CeEEEeCCHH
Confidence 3579999999985 67788999999986 8999999754
No 63
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=92.90 E-value=0.15 Score=40.80 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=31.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|+|+..|+++ ..+.+|++++|.+ |+.+..|+.+
T Consensus 503 ~~~tvi~ith~~~--~~~~~d~i~~l~~-G~i~~~g~~~ 538 (544)
T TIGR01842 503 RGITVVVITHRPS--LLGCVDKILVLQD-GRIARFGERD 538 (544)
T ss_pred CCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEeeCCHH
Confidence 5799999999996 4678999999997 8999999754
No 64
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.85 E-value=0.17 Score=37.24 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=31.5
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||++-|.+.. +....|++++|.. |+.++.|+..
T Consensus 192 g~tillvsH~~~~-~~~~~dri~~l~~-G~i~~~g~~~ 227 (283)
T PRK13636 192 GLTIIIATHDIDI-VPLYCDNVFVMKE-GRVILQGNPK 227 (283)
T ss_pred CCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEeCCHH
Confidence 7899999998877 5567999999997 8999999865
No 65
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.84 E-value=0.19 Score=36.03 Aligned_cols=37 Identities=5% Similarity=-0.046 Sum_probs=31.1
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++.|.+. .+.+..|++++|.. |++++.|+..
T Consensus 196 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 232 (252)
T PRK14272 196 KVTTIIIVTHNMH-QAARVSDTTSFFLV-GDLVEHGPTD 232 (252)
T ss_pred cCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 4589999999887 57778999999997 8999998754
No 66
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.83 E-value=0.18 Score=37.19 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=31.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++.|.+. .+..+.|++++|.. |+.+..|++.
T Consensus 195 ~g~tvl~vtH~~~-~~~~~~dri~~l~~-G~i~~~g~~~ 231 (286)
T PRK13646 195 ENKTIILVSHDMN-EVARYADEVIVMKE-GSIVSQTSPK 231 (286)
T ss_pred CCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 3789999999987 47788999999997 8999999754
No 67
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=92.83 E-value=0.34 Score=34.48 Aligned_cols=36 Identities=6% Similarity=0.030 Sum_probs=29.3
Q ss_pred CceEEEEecCCcHHHHhh-ccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFN-LKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~-FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||++.|.+.. +-.. .|++++|.. |+.++.|+..
T Consensus 195 ~~tiii~sH~~~~-~~~~~~d~i~~l~~-g~i~~~g~~~ 231 (248)
T PRK09580 195 KRSFIIVTHYQRI-LDYIKPDYVHVLYQ-GRIVKSGDFT 231 (248)
T ss_pred CCEEEEEeCCHHH-HHhhhCCEEEEEEC-CeEEEeCCHH
Confidence 6899999999774 3333 799999986 8999999764
No 68
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=92.82 E-value=0.17 Score=35.88 Aligned_cols=36 Identities=8% Similarity=0.063 Sum_probs=31.1
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++.|.+. .+.+..|+++++ . |++++.|+..
T Consensus 162 ~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~ 197 (223)
T TIGR03771 162 AGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQ 197 (223)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHH
Confidence 4789999999987 588889999999 6 8999999765
No 69
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=92.74 E-value=0.17 Score=40.52 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=30.9
Q ss_pred CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.|+||+++-.|.++. +-. .|++++|.+ |+++..|+.+
T Consensus 512 ~~~rT~iiIaHRlst-i~~-aD~IiVl~~-G~i~e~G~h~ 548 (567)
T COG1132 512 LKGRTTLIIAHRLST-IKN-ADRIIVLDN-GRIVERGTHE 548 (567)
T ss_pred hcCCEEEEEeccHhH-HHh-CCEEEEEEC-CEEEEecCHH
Confidence 378999999999943 333 999999997 8999999865
No 70
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=92.72 E-value=0.17 Score=36.25 Aligned_cols=36 Identities=6% Similarity=-0.116 Sum_probs=31.0
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++.|.+. .+.+..|++++|.. |+.++.|+.+
T Consensus 204 ~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 239 (255)
T PRK11300 204 NVTVLLIEHDMK-LVMGISDRIYVVNQ-GTPLANGTPE 239 (255)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEecCCHH
Confidence 689999999876 67788999999997 8999999754
No 71
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=92.69 E-value=0.16 Score=35.61 Aligned_cols=37 Identities=14% Similarity=0.017 Sum_probs=30.7
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|++. .+....|++++|.. |+++..|+..
T Consensus 181 ~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 217 (220)
T cd03263 181 KGRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSPQ 217 (220)
T ss_pred cCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCHH
Confidence 3579999999987 46678899999997 8999998753
No 72
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=92.68 E-value=0.2 Score=35.89 Aligned_cols=37 Identities=11% Similarity=0.043 Sum_probs=31.1
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++.|.+. .+.+..|++++|.. |+++..|+..
T Consensus 194 ~~~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 230 (250)
T PRK14240 194 KDYTIVIVTHNMQ-QASRISDKTAFFLN-GEIVEFGDTV 230 (250)
T ss_pred cCCeEEEEEeCHH-HHHhhCCEEEEEEC-CEEEEeCCHH
Confidence 4689999999865 67788999999997 8999998643
No 73
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.56 E-value=0.21 Score=35.70 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=30.9
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||++.|.+. .+....|++++|.+ |+.++.|+.+
T Consensus 186 g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 221 (242)
T cd03295 186 GKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQVGTPD 221 (242)
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 789999999985 56778899999997 8999998754
No 74
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=92.53 E-value=0.21 Score=36.02 Aligned_cols=37 Identities=8% Similarity=-0.000 Sum_probs=30.8
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|.+. .+-...|++++|.. |+.++.|+..
T Consensus 201 ~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 237 (257)
T PRK10619 201 EGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGAPE 237 (257)
T ss_pred cCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 3789999999876 56677899999997 8999998743
No 75
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=92.52 E-value=0.2 Score=38.11 Aligned_cols=36 Identities=6% Similarity=-0.036 Sum_probs=31.6
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++.|++. .+.++.|++++|.. |++++.|+..
T Consensus 191 g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~~~g~~~ 226 (343)
T PRK11153 191 GLTIVLITHEMD-VVKRICDRVAVIDA-GRLVEQGTVS 226 (343)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 789999999986 67788999999997 8999999754
No 76
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.51 E-value=0.19 Score=35.06 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=27.8
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR 38 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G 38 (98)
++|||++-|.+. .+.++.|++++|.. |+.+..|
T Consensus 181 ~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 181 GITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred CCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 789999999885 56778999999997 8888765
No 77
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=92.49 E-value=0.22 Score=36.14 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=31.9
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|++. .+.++.|++++|.. |+++..|+..
T Consensus 194 ~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 229 (265)
T PRK10253 194 GYTLAAVLHDLN-QACRYASHLIALRE-GKIVAQGAPK 229 (265)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 679999999987 68899999999996 8999999865
No 78
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=92.39 E-value=0.22 Score=36.65 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=31.3
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++.|.+. .+..+.|++++|.. |+++..|+..
T Consensus 205 ~~tviiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 240 (272)
T PRK13547 205 NLGVLAIVHDPN-LAARHADRIAMLAD-GAIVAHGAPA 240 (272)
T ss_pred CCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEEecCHH
Confidence 789999999976 57788999999997 8999999764
No 79
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=92.37 E-value=0.25 Score=35.26 Aligned_cols=36 Identities=11% Similarity=0.097 Sum_probs=31.3
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||++.|++. .+.+..|++++|.. |+.+..|+.+
T Consensus 181 ~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 216 (237)
T TIGR00968 181 HVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSPD 216 (237)
T ss_pred CCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCHH
Confidence 789999999985 67788999999996 8999999754
No 80
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=92.29 E-value=0.21 Score=41.06 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=31.1
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|+|+..|+++ ....+|++++|.+ |+++..|+..
T Consensus 641 ~~~t~i~itH~~~--~~~~~d~ii~l~~-G~i~~~g~~~ 676 (694)
T TIGR01846 641 RGRTVIIIAHRLS--TVRACDRIIVLEK-GQIAESGRHE 676 (694)
T ss_pred CCCEEEEEeCChH--HHHhCCEEEEEeC-CEEEEeCCHH
Confidence 6799999999985 4567999999997 8999999854
No 81
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=92.27 E-value=0.24 Score=35.44 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=31.1
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|.+. .+.++.|++++|.. |++++.|+..
T Consensus 193 ~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 229 (250)
T PRK11264 193 EKRTMVIVTHEMS-FARDVADRAIFMDQ-GRIVEQGPAK 229 (250)
T ss_pred cCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 4789999999876 57788999999997 8999998643
No 82
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=92.24 E-value=0.19 Score=38.58 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=32.2
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|+|.+-|.+. +++.+.|++++|.+ |+.+..|++.
T Consensus 185 ~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~~~ 220 (353)
T TIGR03265 185 GVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGTPQ 220 (353)
T ss_pred CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 679999999985 88999999999997 8999999865
No 83
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=92.24 E-value=0.28 Score=34.91 Aligned_cols=37 Identities=8% Similarity=-0.042 Sum_probs=31.3
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|.+. ++....|++++|.+ |++++.|+..
T Consensus 186 ~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 222 (241)
T PRK10895 186 SGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHGTPT 222 (241)
T ss_pred cCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeCCHH
Confidence 4789999999874 67788999999997 8999998754
No 84
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.24 E-value=0.25 Score=35.68 Aligned_cols=37 Identities=3% Similarity=-0.011 Sum_probs=31.3
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++.|.+. .+.+..|++++|.. |+++..|+..
T Consensus 203 ~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 239 (259)
T PRK14274 203 EKYTIVIVTHNMQ-QAARVSDQTAFFYM-GELVECNDTN 239 (259)
T ss_pred cCCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 3689999999986 67788999999986 8999999743
No 85
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=92.18 E-value=0.25 Score=34.59 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=28.8
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRE 39 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~ 39 (98)
++|||++-|++. .+.+..|++++|.. |+.+..|.
T Consensus 179 ~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 179 QRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred CCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 789999999976 56678999999986 89988874
No 86
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=92.16 E-value=0.25 Score=33.81 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=27.5
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR 38 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G 38 (98)
++|||++-|++. .+.++.|++++|.. |+.++.|
T Consensus 148 ~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~~~ 180 (180)
T cd03214 148 GKTVVMVLHDLN-LAARYADRVILLKD-GRIVAQG 180 (180)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 689999999987 56688999999997 8887654
No 87
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=92.08 E-value=0.22 Score=35.31 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=29.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|.+..- ...|++++|.+ |++++.|+..
T Consensus 187 ~g~~vi~~sh~~~~~--~~~d~v~~l~~-G~i~~~~~~~ 222 (238)
T cd03249 187 KGRTTIVIAHRLSTI--RNADLIAVLQN-GQVVEQGTHD 222 (238)
T ss_pred CCCEEEEEeCCHHHH--hhCCEEEEEEC-CEEEEeCCHH
Confidence 578999999998753 37999999997 8999998743
No 88
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=92.08 E-value=0.23 Score=40.81 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=31.5
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|+|+.-|+++ ....+|++++|.+ |+++..|+.+
T Consensus 649 ~~~T~iiItHrl~--~~~~~D~iivl~~-G~i~e~G~~~ 684 (694)
T TIGR03375 649 AGKTLVLVTHRTS--LLDLVDRIIVMDN-GRIVADGPKD 684 (694)
T ss_pred CCCEEEEEecCHH--HHHhCCEEEEEeC-CEEEeeCCHH
Confidence 6799999999996 4688999999997 9999999754
No 89
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.07 E-value=0.34 Score=35.82 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=29.5
Q ss_pred CCceEEEEecCCcHHHHhhccceEeec-----CCCeEEEecCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMK-----RGGKIIYFREL 40 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~-----~gG~~vy~G~~ 40 (98)
++.|||++-|.+.. ....|+++.|. .||++++.|++
T Consensus 221 ~g~tvIiitH~~~~--i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 221 KGNTVVVIEHNLDV--IKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCCEEEEEeCCHHH--HHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 47899999999963 46799999994 36999999863
No 90
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=92.06 E-value=0.27 Score=34.71 Aligned_cols=36 Identities=8% Similarity=-0.075 Sum_probs=31.1
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||++-|++. .+-...|++++|.. |+.+..|+..
T Consensus 182 ~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 217 (230)
T TIGR03410 182 GMAILLVEQYLD-FARELADRYYVMER-GRVVASGAGD 217 (230)
T ss_pred CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 789999999976 57778999999997 8999999764
No 91
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.02 E-value=0.26 Score=36.07 Aligned_cols=36 Identities=6% Similarity=-0.026 Sum_probs=31.0
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||++-|.+. .+.++.|++++|.. |+++..|+..
T Consensus 195 ~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 230 (280)
T PRK13649 195 GMTIVLVTHLMD-DVANYADFVYVLEK-GKLVLSGKPK 230 (280)
T ss_pred CCEEEEEeccHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 689999999985 66778999999997 8999998754
No 92
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.96 E-value=0.25 Score=35.89 Aligned_cols=37 Identities=5% Similarity=0.063 Sum_probs=31.0
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|++. .+.++.|++++|.. |++++.|+..
T Consensus 212 ~~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 248 (268)
T PRK14248 212 EEYSIIIVTHNMQ-QALRVSDRTAFFLN-GDLVEYDQTE 248 (268)
T ss_pred cCCEEEEEEeCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 3579999999976 57788999999997 8999998743
No 93
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.91 E-value=0.28 Score=34.81 Aligned_cols=35 Identities=14% Similarity=0.076 Sum_probs=30.2
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFREL 40 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~ 40 (98)
++|||++-|++. ++.+..|++++|.. |+.++.|+.
T Consensus 181 ~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 181 GITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred CCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 789999999994 46788999999997 899999864
No 94
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=91.90 E-value=0.25 Score=39.68 Aligned_cols=36 Identities=11% Similarity=0.238 Sum_probs=31.3
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|+|+.-|++ +....+|++++|.. |+++-.|+.+
T Consensus 533 ~~~TvIiItHrl--~~i~~aD~Iivl~~-G~i~e~G~~~ 568 (588)
T PRK11174 533 RRQTTLMVTHQL--EDLAQWDQIWVMQD-GQIVQQGDYA 568 (588)
T ss_pred CCCEEEEEecCh--HHHHhCCEEEEEeC-CeEeecCCHH
Confidence 789999999999 45678999999996 8999999754
No 95
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=91.82 E-value=0.28 Score=35.64 Aligned_cols=36 Identities=6% Similarity=-0.007 Sum_probs=31.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFREL 40 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~ 40 (98)
++.|+++..|||+. +-..-|+++++.+ |++++.|+.
T Consensus 179 ~~~TllmVTH~~~D-a~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 179 RKMTLLMVTHHPED-AARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred hCCEEEEEeCCHHH-HHHhhhceEEEeC-CEEEeeccH
Confidence 67899999999975 5667899999997 999999974
No 96
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=91.81 E-value=0.31 Score=35.00 Aligned_cols=36 Identities=6% Similarity=-0.045 Sum_probs=30.9
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++.|++. .+..+.|++++|.. |+.+..|+..
T Consensus 197 ~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 232 (252)
T TIGR03005 197 DLTMLLVTHEMG-FAREFADRVCFFDK-GRIVEQGKPD 232 (252)
T ss_pred CcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 789999999986 57788999999997 8999988643
No 97
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.77 E-value=0.29 Score=36.15 Aligned_cols=36 Identities=11% Similarity=-0.020 Sum_probs=31.2
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||++.|... .+..+.|++++|.. |+.+..|+..
T Consensus 195 g~tvi~vtHd~~-~~~~~~drv~~l~~-G~i~~~g~~~ 230 (287)
T PRK13637 195 NMTIILVSHSME-DVAKLADRIIVMNK-GKCELQGTPR 230 (287)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 789999999974 56778999999997 8999999754
No 98
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=91.75 E-value=0.27 Score=37.05 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=31.8
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++.|.+. ++..+.|++++|.. |+++..|++.
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~-G~i~~~g~~~ 186 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRK-GKIAQIGTPE 186 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 789999999985 68889999999997 8999999764
No 99
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=91.75 E-value=0.3 Score=34.78 Aligned_cols=37 Identities=8% Similarity=0.049 Sum_probs=30.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|++. .+.+..|++++|.. |+.++.|+..
T Consensus 190 ~~~tii~~sh~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 226 (242)
T PRK11124 190 TGITQVIVTHEVE-VARKTASRVVYMEN-GHIVEQGDAS 226 (242)
T ss_pred cCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 3789999999986 55677899999997 8999998754
No 100
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=91.75 E-value=0.3 Score=39.33 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=31.5
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||+..|+| +....+|++++|.. |+.+..|+.+
T Consensus 524 ~~~tvIivtHr~--~~l~~~D~ii~l~~-G~i~~~G~~~ 559 (592)
T PRK10790 524 EHTTLVVIAHRL--STIVEADTILVLHR-GQAVEQGTHQ 559 (592)
T ss_pred CCCEEEEEecch--HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 578999999999 55778999999996 9999999865
No 101
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=91.68 E-value=0.31 Score=35.28 Aligned_cols=37 Identities=8% Similarity=0.100 Sum_probs=31.0
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|.+. .+..+.|++++|.+ |++++.|+..
T Consensus 190 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 226 (258)
T PRK13548 190 RGLAVIVVLHDLN-LAARYADRIVLLHQ-GRLVADGTPA 226 (258)
T ss_pred cCCEEEEEECCHH-HHHHhcCEEEEEEC-CEEEeeCCHH
Confidence 3789999999866 56778999999997 8999998754
No 102
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=91.66 E-value=0.25 Score=40.91 Aligned_cols=36 Identities=11% Similarity=0.188 Sum_probs=31.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|+|+.-|+++ ....+|++++|.+ |+++..|+..
T Consensus 663 ~~~TvIiItHrl~--~i~~aD~IivL~~-G~ive~Gt~~ 698 (711)
T TIGR00958 663 ASRTVLLIAHRLS--TVERADQILVLKK-GSVVEMGTHK 698 (711)
T ss_pred CCCeEEEEeccHH--HHHhCCEEEEEEC-CEEEEeeCHH
Confidence 6899999999985 4678999999986 8999999864
No 103
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=91.57 E-value=0.3 Score=35.55 Aligned_cols=36 Identities=6% Similarity=0.004 Sum_probs=30.5
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|.+. .+..+.|++++|.. |+++..|+..
T Consensus 200 g~tviivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 235 (267)
T PRK15112 200 GISYIYVTQHLG-MMKHISDQVLVMHQ-GEVVERGSTA 235 (267)
T ss_pred CcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCHH
Confidence 789999999885 67778999999996 8999988643
No 104
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.53 E-value=0.34 Score=35.30 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=31.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|.+. .+....|++++|.. |+.+..|+..
T Consensus 185 ~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 221 (271)
T PRK13638 185 QGNHVIISSHDID-LIYEISDAVYVLRQ-GQILTHGAPG 221 (271)
T ss_pred CCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 4789999999876 46688999999997 8999999754
No 105
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=91.51 E-value=0.33 Score=33.97 Aligned_cols=37 Identities=8% Similarity=0.051 Sum_probs=30.5
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++.|.+. .+....|++++|.. |+++..|+..
T Consensus 181 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 217 (222)
T cd03224 181 EGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEGTAA 217 (222)
T ss_pred CCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeCCHH
Confidence 4689999999875 56678999999997 8999988643
No 106
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=91.50 E-value=0.33 Score=36.11 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=32.3
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|.+. ++-++.|++++|.+ |+.++.|+..
T Consensus 181 ~~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~~ 217 (301)
T TIGR03522 181 KDKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKLD 217 (301)
T ss_pred CCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 4689999999887 67788999999997 8999999865
No 107
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=91.48 E-value=0.34 Score=34.66 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=29.7
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|.+..-..-..|++++|.. |+.++.|+++
T Consensus 200 ~g~tii~~tH~~~~~~~~~~d~i~~l~~-G~i~~~~~~~ 237 (252)
T CHL00131 200 SENSIILITHYQRLLDYIKPDYVHVMQN-GKIIKTGDAE 237 (252)
T ss_pred CCCEEEEEecCHHHHHhhhCCEEEEEeC-CEEEEecChh
Confidence 4789999999876532222699999986 8999999764
No 108
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.47 E-value=0.33 Score=34.86 Aligned_cols=37 Identities=5% Similarity=-0.165 Sum_probs=30.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|.+. .+..+.|++++|.. |+.+..|+..
T Consensus 198 ~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 234 (254)
T PRK14273 198 ESYTIIIVTHNMQ-QAGRISDRTAFFLN-GCIEEESSTD 234 (254)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 3579999999886 56778999999997 8999998753
No 109
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.43 E-value=0.32 Score=35.64 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=30.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|++.. + ...|++++|.+ |+.++.|+..
T Consensus 185 ~g~til~~tH~~~~-~-~~~d~v~~l~~-G~i~~~g~~~ 220 (274)
T PRK13644 185 KGKTIVYITHNLEE-L-HDADRIIVMDR-GKIVLEGEPE 220 (274)
T ss_pred CCCEEEEEecCHHH-H-hhCCEEEEEEC-CEEEEECCHH
Confidence 47899999999985 4 56999999997 8999999864
No 110
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.42 E-value=0.28 Score=34.11 Aligned_cols=34 Identities=6% Similarity=0.050 Sum_probs=27.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR 38 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G 38 (98)
+++|||++-|++. .+.++.|++++|.. |+.++.|
T Consensus 177 ~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 177 AGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred CCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 4689999999886 46677899999997 8888764
No 111
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=91.42 E-value=0.32 Score=35.31 Aligned_cols=36 Identities=11% Similarity=0.034 Sum_probs=30.8
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|.+. .+..+.|++++|.. |+.+..|+..
T Consensus 201 g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 236 (265)
T TIGR02769 201 GTAYLFITHDLR-LVQSFCQRVAVMDK-GQIVEECDVA 236 (265)
T ss_pred CcEEEEEeCCHH-HHHHHhcEEEEEeC-CEEEEECCHH
Confidence 789999999877 55677899999996 8999999764
No 112
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=91.42 E-value=0.32 Score=34.58 Aligned_cols=37 Identities=5% Similarity=0.015 Sum_probs=31.1
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|++. .+.++.|++++|.+ |+.+..|+..
T Consensus 191 ~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~~~~~~~~~ 227 (242)
T TIGR03411 191 GKHSVVVVEHDME-FVRSIADKVTVLHQ-GSVLAEGSLD 227 (242)
T ss_pred cCCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEeeCCHH
Confidence 3579999999877 57788999999997 8999988754
No 113
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=91.37 E-value=0.32 Score=33.81 Aligned_cols=34 Identities=12% Similarity=-0.064 Sum_probs=27.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR 38 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G 38 (98)
+++|||++-|++. .+-.+.|++++|.. |+.+..|
T Consensus 175 ~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 175 QGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred CCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 3789999999887 55667899999997 8988765
No 114
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=91.32 E-value=0.31 Score=34.85 Aligned_cols=36 Identities=3% Similarity=-0.024 Sum_probs=30.3
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.+|||++-|.+. .+..+.|++++|.. |+++..|+..
T Consensus 193 ~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 228 (247)
T TIGR00972 193 KYTIVIVTHNMQ-QAARISDRTAFFYD-GELVEYGPTE 228 (247)
T ss_pred cCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 479999999887 56778899999997 8999998753
No 115
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=91.31 E-value=0.33 Score=38.89 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=31.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||+.-|.+ +....+|++++|.+ |+++-.|+.+
T Consensus 528 ~~~tvI~VtHr~--~~~~~~D~Ii~l~~-g~i~e~g~~~ 563 (582)
T PRK11176 528 KNRTSLVIAHRL--STIEKADEILVVED-GEIVERGTHA 563 (582)
T ss_pred CCCEEEEEecch--HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 578999999999 45788999999997 8999999754
No 116
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.29 E-value=0.3 Score=35.01 Aligned_cols=37 Identities=5% Similarity=-0.073 Sum_probs=31.0
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++.|++. .+.++.|++++|.. |+++..|+..
T Consensus 196 ~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 232 (252)
T PRK14256 196 EKYTIIIVTHNMQ-QAARVSDYTAFFYM-GDLVECGETK 232 (252)
T ss_pred hCCcEEEEECCHH-HHHhhCCEEEEEEC-CEEEEeCCHH
Confidence 4579999999886 66788999999986 8999999753
No 117
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=91.19 E-value=0.37 Score=34.98 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=30.9
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|++. .+....|++++|.. |+++..|+..
T Consensus 198 ~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~~~~~~ 233 (265)
T PRK10575 198 GLTVIAVLHDIN-MAARYCDYLVALRG-GEMIAQGTPA 233 (265)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecCHH
Confidence 789999999876 67788999999996 8999998754
No 118
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=91.14 E-value=0.35 Score=38.92 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=31.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|+|+..|+++ ....+|++++|.. |+++..|+.+
T Consensus 499 ~~~tii~itH~~~--~~~~~d~i~~l~~-G~i~~~g~~~ 534 (569)
T PRK10789 499 EGRTVIISAHRLS--ALTEASEILVMQH-GHIAQRGNHD 534 (569)
T ss_pred CCCEEEEEecchh--HHHcCCEEEEEeC-CEEEEecCHH
Confidence 6899999999995 4677999999997 8999999754
No 119
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=91.14 E-value=0.33 Score=34.42 Aligned_cols=37 Identities=8% Similarity=0.019 Sum_probs=29.7
Q ss_pred CCceEEEEecCCcHHHHhh-ccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFN-LKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~-FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|++.. +... .|++++|.. |+.++.|+.+
T Consensus 193 ~~~tvi~vsH~~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 230 (243)
T TIGR01978 193 PDRSFLIITHYQRL-LNYIKPDYVHVLLD-GRIVKSGDVE 230 (243)
T ss_pred CCcEEEEEEecHHH-HHhhcCCeEEEEeC-CEEEEecCHH
Confidence 47899999999863 4444 699999996 8999999754
No 120
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=91.09 E-value=0.41 Score=34.48 Aligned_cols=37 Identities=14% Similarity=0.093 Sum_probs=31.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|.+. ++....|++++|.. |+++..|+..
T Consensus 182 ~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 218 (248)
T PRK03695 182 QGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRRD 218 (248)
T ss_pred CCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 3689999999877 46778999999997 8999998754
No 121
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=91.05 E-value=0.38 Score=34.10 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=30.3
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|.+.. + ...|++++|.. |++++.|+..
T Consensus 186 ~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~~~~~~ 221 (237)
T cd03252 186 AGRTVIIIAHRLST-V-KNADRIIVMEK-GRIVEQGSHD 221 (237)
T ss_pred CCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEEcCHH
Confidence 47899999999975 3 46999999997 8999999753
No 122
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=91.05 E-value=0.33 Score=39.89 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=30.4
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|+|+.-|++ +....+|++++|.+ |+++..|+.+
T Consensus 635 ~~T~IiItHr~--~~i~~~D~Iivl~~-G~iv~~G~~~ 669 (686)
T TIGR03797 635 KVTRIVIAHRL--STIRNADRIYVLDA-GRVVQQGTYD 669 (686)
T ss_pred CCeEEEEecCh--HHHHcCCEEEEEEC-CEEEEECCHH
Confidence 47999999998 55688999999997 9999999864
No 123
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=91.03 E-value=0.42 Score=34.83 Aligned_cols=36 Identities=8% Similarity=-0.022 Sum_probs=30.6
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||++.|.+. .+..+.|++++|.. |+.++.|+..
T Consensus 194 g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 229 (269)
T PRK11831 194 GVTCVVVSHDVP-EVLSIADHAYIVAD-KKIVAHGSAQ 229 (269)
T ss_pred CcEEEEEecCHH-HHHHhhCEEEEEEC-CEEEEeCCHH
Confidence 789999999874 56778999999986 8999999754
No 124
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=90.98 E-value=0.38 Score=34.47 Aligned_cols=37 Identities=8% Similarity=-0.085 Sum_probs=30.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++.|.+. .+..+.|++++|.+ |+++..|+..
T Consensus 197 ~~~tvii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 233 (253)
T PRK14242 197 ARYTIIIVTHNMQ-QAARVSDVTAFFYM-GKLIEVGPTE 233 (253)
T ss_pred cCCeEEEEEecHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 4679999999886 46678999999997 8999998643
No 125
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.96 E-value=0.41 Score=34.82 Aligned_cols=35 Identities=11% Similarity=0.063 Sum_probs=29.8
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|.+..- .. .|++++|.. |+++..|+..
T Consensus 193 ~~tiiivtH~~~~~-~~-~d~i~~l~~-G~i~~~g~~~ 227 (269)
T PRK13648 193 NITIISITHDLSEA-ME-ADHVIVMNK-GTVYKEGTPT 227 (269)
T ss_pred CCEEEEEecCchHH-hc-CCEEEEEEC-CEEEEecCHH
Confidence 78999999998654 44 999999997 8999999865
No 126
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=90.92 E-value=0.35 Score=39.87 Aligned_cols=36 Identities=11% Similarity=0.224 Sum_probs=30.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|+|+.-|+++ ....+|++++|.+ |+++..|+.+
T Consensus 661 ~~~T~IiitHrl~--~i~~~D~Iivl~~-G~i~~~G~~~ 696 (710)
T TIGR03796 661 RGCTCIIVAHRLS--TIRDCDEIIVLER-GKVVQRGTHE 696 (710)
T ss_pred cCCEEEEEecCHH--HHHhCCEEEEEeC-CEEEEecCHH
Confidence 4789999999985 4677999999997 9999999865
No 127
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.88 E-value=0.39 Score=33.73 Aligned_cols=36 Identities=8% Similarity=-0.096 Sum_probs=30.3
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|.+. .+....|++++|.. |+++..|+..
T Consensus 182 ~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 217 (220)
T cd03265 182 GMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGTPE 217 (220)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCChH
Confidence 789999999877 57778999999997 8999988653
No 128
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=90.88 E-value=0.42 Score=34.08 Aligned_cols=33 Identities=9% Similarity=0.077 Sum_probs=27.3
Q ss_pred CCceEEEEecCCcHHHHhhccceEee------cCCCeEEEec
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLM------KRGGKIIYFR 38 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL------~~gG~~vy~G 38 (98)
++.|||++-|.+.. ....|++++| .. |++|+.|
T Consensus 188 ~g~tii~itH~~~~--~~~~d~i~~l~~~~~~~~-G~iv~~g 226 (226)
T cd03270 188 LGNTVLVVEHDEDT--IRAADHVIDIGPGAGVHG-GEIVAQG 226 (226)
T ss_pred CCCEEEEEEeCHHH--HHhCCEEEEeCCCccccC-CEEEecC
Confidence 47899999999863 4689999999 64 8888876
No 129
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=90.84 E-value=0.4 Score=34.65 Aligned_cols=37 Identities=11% Similarity=0.036 Sum_probs=30.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|++. .+..+.|++++|.. |+++..|+..
T Consensus 204 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 240 (260)
T PRK10744 204 QDYTVVIVTHNMQ-QAARCSDYTAFMYL-GELIEFGNTD 240 (260)
T ss_pred cCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 4679999999986 56788999999997 8999998743
No 130
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=90.81 E-value=0.42 Score=34.56 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=30.6
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++.|.+.. +....|++++|.. |++++.|+..
T Consensus 203 g~tvii~tH~~~~-~~~~~d~i~~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 203 GITVVVTLHQVDY-ALRYCERIVALRQ-GHVFYDGSSQ 238 (262)
T ss_pred CCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCHH
Confidence 7899999999864 5667899999997 8999999764
No 131
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.68 E-value=0.43 Score=34.67 Aligned_cols=37 Identities=3% Similarity=0.006 Sum_probs=31.1
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++.|++. .+-.+.|++++|.. |+++..|+..
T Consensus 201 ~~~tiilvsh~~~-~~~~~~d~v~~l~~-g~i~~~g~~~ 237 (257)
T PRK14246 201 NEIAIVIVSHNPQ-QVARVADYVAFLYN-GELVEWGSSN 237 (257)
T ss_pred cCcEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 3579999999975 67788999999996 8999998743
No 132
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=90.58 E-value=0.44 Score=38.47 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=31.0
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|+|+.-|+++. ...+|++++|.+ |+.+..|+.+
T Consensus 523 ~~~tviiitHr~~~--~~~~d~i~~l~~-G~i~~~g~~~ 558 (574)
T PRK11160 523 QNKTVLMITHRLTG--LEQFDRICVMDN-GQIIEQGTHQ 558 (574)
T ss_pred CCCEEEEEecChhH--HHhCCEEEEEeC-CeEEEeCCHH
Confidence 68999999999965 467999999997 8999999754
No 133
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=90.51 E-value=0.5 Score=34.47 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=30.7
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|.+. .+....|++++|.. |++++.|+..
T Consensus 184 ~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 219 (257)
T PRK11247 184 GFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTVD 219 (257)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecccc
Confidence 689999999988 46778999999997 8999988754
No 134
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=90.49 E-value=0.43 Score=34.76 Aligned_cols=37 Identities=5% Similarity=0.007 Sum_probs=30.5
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|++. .+-...|++++|.. |+++..|+..
T Consensus 211 ~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 247 (267)
T PRK14235 211 QNYTIVIVTHSMQ-QAARVSQRTAFFHL-GNLVEVGDTE 247 (267)
T ss_pred cCCeEEEEEcCHH-HHHhhCCEEEEEEC-CEEEEeCCHH
Confidence 3579999999876 56678899999997 8999998643
No 135
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.49 E-value=0.46 Score=33.35 Aligned_cols=36 Identities=11% Similarity=0.175 Sum_probs=29.6
Q ss_pred CceEEEEecCCcHHHHhhccceEeecC-CCeEEEecCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKR-GGKIIYFREL 40 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~-gG~~vy~G~~ 40 (98)
++|||++-|++. .+....|++++|.+ +|+++..+++
T Consensus 182 ~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 182 GKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 789999999986 56678999999983 3899887764
No 136
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=90.46 E-value=0.39 Score=35.96 Aligned_cols=37 Identities=19% Similarity=0.071 Sum_probs=31.1
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.+.|||++-|... .+.+..|++++|.. |++++.|++.
T Consensus 214 ~g~tiiivtHd~~-~~~~~adrv~vl~~-G~i~~~g~~~ 250 (305)
T PRK13651 214 QGKTIILVTHDLD-NVLEWTKRTIFFKD-GKIIKDGDTY 250 (305)
T ss_pred CCCEEEEEeeCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 3789999989876 56688999999987 8999999865
No 137
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=90.45 E-value=0.42 Score=35.05 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=30.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.++|||++-|++. .+.+..|++++|.. |+++..|+..
T Consensus 192 ~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~ 228 (264)
T PRK13546 192 QNKTIFFVSHNLG-QVRQFCTKIAWIEG-GKLKDYGELD 228 (264)
T ss_pred CCCEEEEEcCCHH-HHHHHcCEEEEEEC-CEEEEeCCHH
Confidence 4789999999855 56677899999986 8999998754
No 138
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=90.32 E-value=0.48 Score=33.93 Aligned_cols=36 Identities=8% Similarity=0.081 Sum_probs=30.1
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|.+. .+....|++++|.. |+.+..|+.+
T Consensus 199 ~~tii~vsH~~~-~~~~~~d~~~~l~~-G~i~~~~~~~ 234 (253)
T TIGR02323 199 GLAVIIVTHDLG-VARLLAQRLLVMQQ-GRVVESGLTD 234 (253)
T ss_pred CCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEECCHH
Confidence 789999999875 66678899999997 8999998743
No 139
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=90.23 E-value=0.5 Score=36.27 Aligned_cols=36 Identities=8% Similarity=-0.005 Sum_probs=31.8
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|+|.+.|.+ .++..+.|++++|.+ |+++..|++.
T Consensus 185 g~tii~vTHd~-~ea~~l~D~i~vl~~-G~i~~~g~~~ 220 (356)
T PRK11650 185 KTTSLYVTHDQ-VEAMTLADRVVVMNG-GVAEQIGTPV 220 (356)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEeC-CEEEEECCHH
Confidence 68999999988 568999999999997 9999999865
No 140
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.21 E-value=0.48 Score=33.86 Aligned_cols=36 Identities=6% Similarity=-0.080 Sum_probs=30.7
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||++-|.+. .+.+..|++++|.. |+.+..|++.
T Consensus 182 g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 217 (241)
T PRK14250 182 NLTVIWITHNME-QAKRIGDYTAFLNK-GILVEYAKTY 217 (241)
T ss_pred CCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEeCCHH
Confidence 789999999877 46778999999997 8999998754
No 141
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.17 E-value=0.49 Score=34.16 Aligned_cols=37 Identities=11% Similarity=-0.013 Sum_probs=30.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|++. .+.+..|++++|.. |+.++.|+..
T Consensus 202 ~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 238 (258)
T PRK14268 202 KDYTIVIVTHNMQ-QAARISDYTGFFLM-GELIEFGQTR 238 (258)
T ss_pred hCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 4689999999876 45577899999986 8999998753
No 142
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.15 E-value=0.57 Score=32.94 Aligned_cols=35 Identities=26% Similarity=0.185 Sum_probs=29.1
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFREL 40 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~ 40 (98)
+++|||++.|.+.. + ...|++++|.. |+.++.|+.
T Consensus 187 ~~~tii~~sh~~~~-~-~~~d~i~~l~~-g~~~~~~~~ 221 (229)
T cd03254 187 KGRTSIIIAHRLST-I-KNADKILVLDD-GKIIEEGTH 221 (229)
T ss_pred CCCEEEEEecCHHH-H-hhCCEEEEEeC-CeEEEeCCH
Confidence 57899999999865 3 45999999997 899988763
No 143
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.06 E-value=0.55 Score=34.35 Aligned_cols=36 Identities=14% Similarity=-0.053 Sum_probs=30.9
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++.|.+. .+..+.|++++|.. |+.+..|+..
T Consensus 187 ~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 222 (275)
T PRK13639 187 GITIIISTHDVD-LVPVYADKVYVMSD-GKIIKEGTPK 222 (275)
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 789999999866 56678999999997 8999999765
No 144
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=90.05 E-value=0.54 Score=35.66 Aligned_cols=36 Identities=8% Similarity=0.041 Sum_probs=31.1
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||+..|... .+..+.|++++|.. |+++..|+..
T Consensus 212 g~til~iTHdl~-~~~~~~Dri~vm~~-G~ive~g~~~ 247 (330)
T PRK09473 212 NTAIIMITHDLG-VVAGICDKVLVMYA-GRTMEYGNAR 247 (330)
T ss_pred CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 789999999987 56678999999997 8999999854
No 145
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.04 E-value=0.57 Score=34.32 Aligned_cols=36 Identities=6% Similarity=0.035 Sum_probs=30.7
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|.+. .+.+..|++++|.. |+.++.|+++
T Consensus 188 g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 223 (274)
T PRK13647 188 GKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAEGDKS 223 (274)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 689999999966 46678999999997 8999999854
No 146
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=89.97 E-value=0.45 Score=36.32 Aligned_cols=36 Identities=8% Similarity=0.004 Sum_probs=31.4
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++.|.+. ++..+.|++++|.. |+++..|+..
T Consensus 182 g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 217 (354)
T TIGR02142 182 GIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPIA 217 (354)
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCHH
Confidence 689999999986 67888999999997 8999999754
No 147
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.91 E-value=0.55 Score=34.16 Aligned_cols=38 Identities=8% Similarity=0.071 Sum_probs=30.7
Q ss_pred CCceEEEEecCCcHHHHhhccceEeec-------CCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMK-------RGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~-------~gG~~vy~G~~~ 41 (98)
+++|||++.|++. .+.++.|++++|. .+|+++..|+..
T Consensus 197 ~~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~ 241 (261)
T PRK14263 197 KDYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPTA 241 (261)
T ss_pred cCCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCHH
Confidence 4679999999877 4678899999996 248999999753
No 148
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=89.89 E-value=0.54 Score=33.86 Aligned_cols=36 Identities=11% Similarity=0.070 Sum_probs=30.3
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|.+.. +....|++++|.. |+++..|+.+
T Consensus 191 g~til~~sH~~~~-~~~~~d~v~~l~~-G~i~~~~~~~ 226 (254)
T PRK10418 191 ALGMLLVTHDMGV-VARLADDVAVMSH-GRIVEQGDVE 226 (254)
T ss_pred CcEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEecCHH
Confidence 7899999998776 5567899999986 8999998754
No 149
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=89.87 E-value=0.49 Score=33.57 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=27.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR 38 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G 38 (98)
++.|||++.|++. ++....|++++|.. |+++..|
T Consensus 191 ~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 191 QGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 4689999999975 45667899999986 8988765
No 150
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=89.87 E-value=0.5 Score=36.36 Aligned_cols=36 Identities=3% Similarity=0.033 Sum_probs=31.8
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||.+-|.+. ++..+.|++++|.+ |+++..|++.
T Consensus 184 g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~~~ 219 (369)
T PRK11000 184 GRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKPL 219 (369)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 789999999986 78889999999997 8999999764
No 151
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=89.84 E-value=0.53 Score=38.82 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=31.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|+|+.-|.++ ....+|++++|.+ |+.+..|+..
T Consensus 658 ~~~T~IiitHr~~--~~~~~D~i~~l~~-G~i~~~G~~~ 693 (708)
T TIGR01193 658 QDKTIIFVAHRLS--VAKQSDKIIVLDH-GKIIEQGSHD 693 (708)
T ss_pred cCCEEEEEecchH--HHHcCCEEEEEEC-CEEEEECCHH
Confidence 5799999999996 5678999999997 8999999854
No 152
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.83 E-value=0.56 Score=34.57 Aligned_cols=37 Identities=11% Similarity=0.122 Sum_probs=30.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|.+. .+.+..|++++|.+ |+++..|+..
T Consensus 194 ~g~tvlivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 230 (287)
T PRK13641 194 AGHTVILVTHNMD-DVAEYADDVLVLEH-GKLIKHASPK 230 (287)
T ss_pred CCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 4789999888765 56778999999997 8999999754
No 153
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.81 E-value=0.55 Score=34.50 Aligned_cols=36 Identities=6% Similarity=-0.099 Sum_probs=30.8
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
..|||++.|.+. .+.++.|++++|.. |+++..|+..
T Consensus 212 ~~tiiivsH~~~-~~~~~~dri~~l~~-G~i~~~g~~~ 247 (276)
T PRK14271 212 RLTVIIVTHNLA-QAARISDRAALFFD-GRLVEEGPTE 247 (276)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 479999999886 67788999999997 8999998754
No 154
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=89.72 E-value=0.5 Score=34.47 Aligned_cols=37 Identities=8% Similarity=0.027 Sum_probs=30.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++.|++. .+.+..|++++|.. |+.+..|+..
T Consensus 216 ~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 252 (272)
T PRK14236 216 SKYTIVIVTHNMQ-QAARVSDYTAFMYM-GKLVEYGDTD 252 (272)
T ss_pred hCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEecCCHH
Confidence 3579999999875 46678999999997 8999998743
No 155
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=89.53 E-value=0.62 Score=37.73 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=30.7
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||+.-|+++. ...+|++++|.. |+++..|+.+
T Consensus 519 ~~~tvI~isH~~~~--~~~~d~i~~l~~-G~i~~~g~~~ 554 (585)
T TIGR01192 519 KNRTTFIIAHRLST--VRNADLVLFLDQ-GRLIEKGSFQ 554 (585)
T ss_pred CCCEEEEEEcChHH--HHcCCEEEEEEC-CEEEEECCHH
Confidence 58999999999944 477999999997 8999999754
No 156
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.50 E-value=0.74 Score=32.94 Aligned_cols=37 Identities=11% Similarity=0.013 Sum_probs=30.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++.|++. .+....|++++|.. |+.+..|+..
T Consensus 190 ~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 226 (246)
T PRK14269 190 HNLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFGESK 226 (246)
T ss_pred CCCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEECCHH
Confidence 4789999999875 35677899999997 8999998743
No 157
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.46 E-value=0.49 Score=34.52 Aligned_cols=38 Identities=11% Similarity=0.028 Sum_probs=30.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecC----------CCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKR----------GGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~----------gG~~vy~G~~~ 41 (98)
+++|||++-|++. .+..+.|++++|.. +|+++..|+++
T Consensus 202 ~~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~ 249 (269)
T PRK14259 202 KNFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETK 249 (269)
T ss_pred cCCEEEEEeCCHH-HHHHhcCEEEEEeccccccccccccceEEEeCCHH
Confidence 4679999999875 67788999999985 26789998754
No 158
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.43 E-value=0.53 Score=33.76 Aligned_cols=37 Identities=16% Similarity=0.009 Sum_probs=30.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|++.. +.+..|++++|.+ |+.+..|+..
T Consensus 197 ~~~tvii~sh~~~~-~~~~~d~v~~l~~-G~i~~~g~~~ 233 (253)
T PRK14261 197 KEYTVIIVTHNMQQ-AARVSDYTGFMYL-GKLIEFDKTT 233 (253)
T ss_pred hCceEEEEEcCHHH-HHhhCCEEEEEEC-CEEEEcCCHH
Confidence 35799999998766 6678899999997 8999998743
No 159
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.29 E-value=0.62 Score=33.31 Aligned_cols=37 Identities=5% Similarity=-0.100 Sum_probs=30.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|++. .+.+..|++++|.. |+++..|+..
T Consensus 195 ~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 231 (251)
T PRK14251 195 HQYTFIMVTHNLQ-QAGRISDQTAFLMN-GDLIEAGPTE 231 (251)
T ss_pred cCCeEEEEECCHH-HHHhhcCEEEEEEC-CEEEEeCCHH
Confidence 3579999999887 46677899999997 8999998743
No 160
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=89.24 E-value=0.79 Score=31.83 Aligned_cols=26 Identities=12% Similarity=-0.094 Sum_probs=21.7
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKR 30 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~ 30 (98)
+++|||++-|.+.. .+..|++++|.+
T Consensus 138 ~g~tvIivSH~~~~--~~~~d~i~~l~~ 163 (176)
T cd03238 138 LGNTVILIEHNLDV--LSSADWIIDFGP 163 (176)
T ss_pred CCCEEEEEeCCHHH--HHhCCEEEEECC
Confidence 47899999999864 467999999965
No 161
>PTZ00243 ABC transporter; Provisional
Probab=89.19 E-value=0.52 Score=42.68 Aligned_cols=37 Identities=11% Similarity=0.141 Sum_probs=32.2
Q ss_pred CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.+++|||+.-|.+ +....+|+|++|.. |+++-+|++.
T Consensus 1493 ~~~~TvI~IAHRl--~ti~~~DrIlVLd~-G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1493 FSAYTVITIAHRL--HTVAQYDKIIVMDH-GAVAEMGSPR 1529 (1560)
T ss_pred CCCCEEEEEeccH--HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 4789999999988 45677999999997 9999999875
No 162
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.17 E-value=0.7 Score=33.86 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=30.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeec--------CCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMK--------RGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~--------~gG~~vy~G~~~ 41 (98)
++.|||++.|++. .+..+.|++++|. ..|+++..|+..
T Consensus 209 ~~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~ 254 (274)
T PRK14265 209 EQYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGKRRGKLVEFSPTE 254 (274)
T ss_pred cCCEEEEEeCCHH-HHHHhCCEEEEEecccccccccCceEEEeCCHH
Confidence 4579999999885 4567889999997 148999999864
No 163
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=89.17 E-value=0.64 Score=33.94 Aligned_cols=37 Identities=5% Similarity=-0.020 Sum_probs=30.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|.+. .+.+..|++++|.. |+.+..|+..
T Consensus 215 ~~~tiiivsH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~ 251 (271)
T PRK14238 215 KDYSIIIVTHNMQ-QAARISDKTAFFLN-GYVNEYDDTD 251 (271)
T ss_pred cCCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 3689999999876 46678899999997 8999998743
No 164
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.16 E-value=0.65 Score=34.26 Aligned_cols=37 Identities=5% Similarity=-0.076 Sum_probs=30.7
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|++.. +.+..|++++|.. |+++..|+..
T Consensus 230 ~~~tvIivsH~~~~-~~~~~d~i~~L~~-G~i~~~g~~~ 266 (286)
T PRK14275 230 GSYTIMIVTHNMQQ-ASRVSDYTMFFYE-GVLVEHAPTA 266 (286)
T ss_pred cCCeEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCHH
Confidence 35799999998874 6678999999997 8999999754
No 165
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.10 E-value=0.67 Score=34.04 Aligned_cols=35 Identities=11% Similarity=-0.005 Sum_probs=30.0
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++.|.+.. + ...|++++|.. |+.+..|+..
T Consensus 191 g~tilivtH~~~~-~-~~~dri~~l~~-G~i~~~g~~~ 225 (279)
T PRK13650 191 QMTVISITHDLDE-V-ALSDRVLVMKN-GQVESTSTPR 225 (279)
T ss_pred CCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEEECCHH
Confidence 7899999999875 4 57999999986 8999999754
No 166
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.07 E-value=0.6 Score=32.59 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=27.5
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR 38 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G 38 (98)
+.|||++-|++.. +....|++++|.. |+.+..|
T Consensus 182 ~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 182 NIPVIFVTHDLSE-AEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CcEEEEEecCHHH-HHHhcCEEEEEEC-CEEEecC
Confidence 7899999999864 5677899999997 8988765
No 167
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=89.03 E-value=0.67 Score=34.02 Aligned_cols=35 Identities=11% Similarity=0.033 Sum_probs=30.2
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|.+... -. .|++++|.. |+.+..|+..
T Consensus 195 g~tillvtH~~~~~-~~-~d~v~~l~~-G~i~~~g~~~ 229 (280)
T PRK13633 195 GITIILITHYMEEA-VE-ADRIIVMDS-GKVVMEGTPK 229 (280)
T ss_pred CCEEEEEecChHHH-hc-CCEEEEEEC-CEEEEecCHH
Confidence 78999999999964 34 999999997 8999999765
No 168
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.01 E-value=0.69 Score=33.11 Aligned_cols=36 Identities=11% Similarity=0.024 Sum_probs=30.1
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++.|++. .+.+..|++++|.. |+++..|+..
T Consensus 197 ~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 232 (252)
T PRK14255 197 QYTIILVTHSMH-QASRISDKTAFFLT-GNLIEFADTK 232 (252)
T ss_pred CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 468999999875 57788999999996 8999998643
No 169
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=88.97 E-value=0.81 Score=35.04 Aligned_cols=36 Identities=8% Similarity=-0.105 Sum_probs=30.8
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++.|+. ..+.+..|++++|.. |+++..|+..
T Consensus 191 g~tiiliTH~~-~~v~~~~d~v~vl~~-G~iv~~g~~~ 226 (343)
T TIGR02314 191 GLTILLITHEM-DVVKRICDCVAVISN-GELIEQGTVS 226 (343)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 78999999986 456688999999997 8999999754
No 170
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=88.94 E-value=0.62 Score=36.50 Aligned_cols=37 Identities=8% Similarity=0.066 Sum_probs=31.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.++|||++.|.+. ++..+.|++++|.. |+.+..|+..
T Consensus 214 ~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~~ 250 (400)
T PRK10070 214 HQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTPD 250 (400)
T ss_pred CCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCHH
Confidence 3789999999876 57888999999997 8999998754
No 171
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=88.86 E-value=0.62 Score=33.97 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=30.7
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|.+. .+-.+.|++++|.. |+.+..|+..
T Consensus 202 ~~tiiivsH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~ 237 (268)
T PRK10419 202 GTACLFITHDLR-LVERFCQRVMVMDN-GQIVETQPVG 237 (268)
T ss_pred CcEEEEEECCHH-HHHHhCCEEEEEEC-CEEeeeCChh
Confidence 689999999876 56667899999986 8999999865
No 172
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.84 E-value=0.74 Score=32.48 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=29.1
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFREL 40 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~ 40 (98)
+++|||++.|++.. +- ..|++++|.. |+.+..|+.
T Consensus 186 ~~~tii~~sh~~~~-~~-~~d~v~~l~~-G~i~~~~~~ 220 (234)
T cd03251 186 KNRTTFVIAHRLST-IE-NADRIVVLED-GKIVERGTH 220 (234)
T ss_pred CCCEEEEEecCHHH-Hh-hCCEEEEecC-CeEeeeCCH
Confidence 57899999999965 33 4999999997 899988864
No 173
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.83 E-value=0.73 Score=33.90 Aligned_cols=35 Identities=9% Similarity=0.031 Sum_probs=30.3
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|.+... ...|++++|.. |+.+..|+..
T Consensus 194 g~tvli~tH~~~~~--~~~d~i~~l~~-G~i~~~g~~~ 228 (282)
T PRK13640 194 NLTVISITHDIDEA--NMADQVLVLDD-GKLLAQGSPV 228 (282)
T ss_pred CCEEEEEecCHHHH--HhCCEEEEEEC-CEEEEeCCHH
Confidence 78999999999864 46999999997 8999999864
No 174
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.77 E-value=0.71 Score=32.10 Aligned_cols=33 Identities=6% Similarity=0.028 Sum_probs=26.3
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR 38 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G 38 (98)
+.|||++-|.+. .+-+..|++++|.+ |+++..|
T Consensus 179 ~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 179 KMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred CCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 789999988774 45567899999997 8887654
No 175
>PLN03232 ABC transporter C family member; Provisional
Probab=88.73 E-value=0.61 Score=41.99 Aligned_cols=37 Identities=8% Similarity=0.257 Sum_probs=31.7
Q ss_pred CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.+++|||+.-|..+. ...+|+|++|.+ |+++-+|+++
T Consensus 1418 ~~~~TvI~IAHRl~t--i~~~DrIlVL~~-G~ivE~Gt~~ 1454 (1495)
T PLN03232 1418 FKSCTMLVIAHRLNT--IIDCDKILVLSS-GQVLEYDSPQ 1454 (1495)
T ss_pred cCCCEEEEEeCCHHH--HHhCCEEEEEEC-CEEEEECCHH
Confidence 378999999999844 456999999997 9999999876
No 176
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.70 E-value=0.72 Score=33.92 Aligned_cols=35 Identities=11% Similarity=0.070 Sum_probs=29.9
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|++.. +. ..|++++|.. |+.++.|+..
T Consensus 191 ~~tilivsH~~~~-~~-~~d~i~~l~~-G~i~~~g~~~ 225 (279)
T PRK13635 191 GITVLSITHDLDE-AA-QADRVIVMNK-GEILEEGTPE 225 (279)
T ss_pred CCEEEEEecCHHH-HH-cCCEEEEEEC-CEEEEECCHH
Confidence 7899999999875 33 5999999997 8999999854
No 177
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=88.69 E-value=0.7 Score=36.94 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=31.0
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|+|+.-|.+ +....+|++++|.. |+.+-.|+..
T Consensus 524 ~~~t~IiitH~~--~~~~~~d~vi~l~~-g~~~~~g~~~ 559 (576)
T TIGR02204 524 KGRTTLIIAHRL--ATVLKADRIVVMDQ-GRIVAQGTHA 559 (576)
T ss_pred CCCEEEEEecch--HHHHhCCEEEEEEC-CEEEeeecHH
Confidence 679999999998 45688999999997 8999998754
No 178
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=88.68 E-value=0.68 Score=36.74 Aligned_cols=38 Identities=11% Similarity=-0.010 Sum_probs=31.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQ 42 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~ 42 (98)
++.|||++-|.+. .+....|++++|.. |++++.|+..+
T Consensus 192 ~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 229 (506)
T PRK13549 192 HGIACIYISHKLN-EVKAISDTICVIRD-GRHIGTRPAAG 229 (506)
T ss_pred CCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeeeccccc
Confidence 4789999999875 55677899999997 89999998763
No 179
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=88.57 E-value=0.72 Score=35.20 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=31.7
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|.+. ++..+.|++++|.+ |+.+..|++.
T Consensus 179 g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 214 (352)
T PRK11144 179 NIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPLE 214 (352)
T ss_pred CCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCHH
Confidence 689999999985 78899999999997 8999999764
No 180
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=88.56 E-value=0.76 Score=37.05 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=31.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||+.-|.++ ....+|++++|.. |+.+..|+.+
T Consensus 519 ~~~tvIiitHr~~--~~~~~D~ii~l~~-G~i~~~g~~~ 554 (588)
T PRK13657 519 KGRTTFIIAHRLS--TVRNADRILVFDN-GRVVESGSFD 554 (588)
T ss_pred cCCEEEEEEecHH--HHHhCCEEEEEEC-CEEEEeCCHH
Confidence 6799999999985 5788999999986 8999998754
No 181
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=88.51 E-value=0.9 Score=35.62 Aligned_cols=37 Identities=8% Similarity=0.065 Sum_probs=31.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++.|.+. .+.++.|++++|.. |+.+..|+++
T Consensus 188 ~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~G~~~ 224 (402)
T PRK09536 188 DGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAAGPPA 224 (402)
T ss_pred cCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 4789999999864 56678999999997 8999999865
No 182
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=88.41 E-value=0.79 Score=31.19 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=26.8
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR 38 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G 38 (98)
++.|||++-|.+.. + ...|++++|.. |+.++.|
T Consensus 146 ~~~tii~~sh~~~~-~-~~~d~~~~l~~-g~i~~~~ 178 (178)
T cd03247 146 KDKTLIWITHHLTG-I-EHMDKILFLEN-GKIIMQG 178 (178)
T ss_pred CCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEecC
Confidence 46899999999875 3 46899999996 8988654
No 183
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=88.38 E-value=0.53 Score=32.67 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=25.5
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEE
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKII 35 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~v 35 (98)
+++|||++-|.+.. +..+.|++++|.. |++|
T Consensus 175 ~~~tii~~sH~~~~-~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 175 QGKAVIVITHDYEF-LAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred CCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEC
Confidence 47899999999874 6678999999987 7764
No 184
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=88.28 E-value=0.82 Score=32.39 Aligned_cols=35 Identities=9% Similarity=0.058 Sum_probs=28.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFREL 40 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~ 40 (98)
++.|||++-|++.. + ..+|++++|.. |+++..|+.
T Consensus 195 ~g~tvii~sH~~~~-~-~~~~~~~~l~~-G~i~~~~~~ 229 (233)
T PRK11629 195 QGTAFLVVTHDLQL-A-KRMSRQLEMRD-GRLTAELSL 229 (233)
T ss_pred CCCEEEEEeCCHHH-H-HhhCEEEEEEC-CEEEEEecc
Confidence 47899999999865 3 34689999986 899988864
No 185
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=88.22 E-value=0.8 Score=37.54 Aligned_cols=37 Identities=11% Similarity=0.041 Sum_probs=31.8
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.++|||++-|.+. .+..+.|++++|.. |+++..|+..
T Consensus 192 ~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~~G~~~ 228 (549)
T PRK13545 192 QGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKEYGDIK 228 (549)
T ss_pred CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 4789999999975 67788999999997 8999999765
No 186
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=88.22 E-value=0.78 Score=32.04 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=26.5
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR 38 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G 38 (98)
..|||++-|.+.. + +..|++++|.. |++++.|
T Consensus 189 ~~tii~~sH~~~~-~-~~~d~v~~l~~-g~i~~~~ 220 (220)
T cd03245 189 DKTLIIITHRPSL-L-DLVDRIIVMDS-GRIVADG 220 (220)
T ss_pred CCEEEEEeCCHHH-H-HhCCEEEEEeC-CeEeecC
Confidence 3799999999973 4 78999999997 8887754
No 187
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=88.08 E-value=0.83 Score=32.91 Aligned_cols=38 Identities=3% Similarity=0.011 Sum_probs=30.3
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecC-----CCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKR-----GGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~-----gG~~vy~G~~~ 41 (98)
+++|||++.|++. .+.++.|+++++.. .|++++.|+..
T Consensus 196 ~~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~ 238 (258)
T PRK14241 196 QDYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDTE 238 (258)
T ss_pred cCCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCHH
Confidence 4579999999876 46778899999972 38999999753
No 188
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=88.08 E-value=1 Score=32.60 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=30.6
Q ss_pred CceEEEEecCCcHHHHhhccceEeecC-CCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKR-GGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~-gG~~vy~G~~~ 41 (98)
+.|||++-|.+. .+..+.|++++|.+ +|+++..++..
T Consensus 179 g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 179 GKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 789999999886 67788999999984 48999887653
No 189
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.99 E-value=0.98 Score=32.61 Aligned_cols=38 Identities=5% Similarity=-0.071 Sum_probs=30.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecC----CCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKR----GGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~----gG~~vy~G~~~ 41 (98)
+++|||++-|.+. .+.+..|++++|.. +|+.+..|++.
T Consensus 198 ~~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~~ 239 (259)
T PRK14260 198 SELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVTT 239 (259)
T ss_pred cCCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCHH
Confidence 3579999999876 66788999999973 38999999754
No 190
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=87.98 E-value=0.7 Score=35.82 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=32.1
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.+.|+|.+-|.+. +++.+-|++++|.. |+++..|++.
T Consensus 199 ~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~~~ 235 (377)
T PRK11607 199 VGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGEPE 235 (377)
T ss_pred cCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcCHH
Confidence 3689999999876 78899999999997 8999999864
No 191
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=87.96 E-value=0.79 Score=35.15 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=30.7
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|+|+..|-+ .++..+.|++++|.. |+++..|++.
T Consensus 187 g~tii~vTHd~-~ea~~~~Dri~vl~~-G~i~~~g~~~ 222 (353)
T PRK10851 187 KFTSVFVTHDQ-EEAMEVADRVVVMSQ-GNIEQAGTPD 222 (353)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 67888888876 667888999999997 8999999764
No 192
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=87.88 E-value=0.93 Score=32.92 Aligned_cols=37 Identities=5% Similarity=-0.024 Sum_probs=30.0
Q ss_pred CCceEEEEecCCcHHHHhhccceEeec---------CCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMK---------RGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~---------~gG~~vy~G~~~ 41 (98)
+++|||++-|.+. .+.+..|++++|. + |+++..|+..
T Consensus 199 ~~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~-g~i~~~~~~~ 244 (264)
T PRK14243 199 EQYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRY-GYLVEFDRTE 244 (264)
T ss_pred cCCEEEEEecCHH-HHHHhCCEEEEEecccccccccC-ceEEEeCCHH
Confidence 3578999888765 6788899999998 5 8999999643
No 193
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=87.88 E-value=0.85 Score=35.55 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=31.9
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||++.|.+. ++..+.|++++|.. |+.+..|+..
T Consensus 215 ~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~ 250 (382)
T TIGR03415 215 NKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPE 250 (382)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 789999999977 57889999999997 8999999865
No 194
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=87.87 E-value=0.79 Score=41.38 Aligned_cols=37 Identities=11% Similarity=0.264 Sum_probs=31.7
Q ss_pred CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.+++|||+.-|.++. ...+|+|++|.+ |+++-+|++.
T Consensus 1468 ~~~~TvI~IAHRl~t--i~~~DrIlVld~-G~IvE~G~~~ 1504 (1522)
T TIGR00957 1468 FEDCTVLTIAHRLNT--IMDYTRVIVLDK-GEVAEFGAPS 1504 (1522)
T ss_pred cCCCEEEEEecCHHH--HHhCCEEEEEEC-CEEEEECCHH
Confidence 378999999998854 556999999997 9999999875
No 195
>PLN03130 ABC transporter C family member; Provisional
Probab=87.77 E-value=0.83 Score=41.59 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=32.3
Q ss_pred CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.+++|+|+..|+++ ....+|+|++|.. |+++..|+.+
T Consensus 788 l~~kTvIlVTH~l~--~l~~aD~Ii~L~~-G~i~e~Gt~~ 824 (1622)
T PLN03130 788 LRGKTRVLVTNQLH--FLSQVDRIILVHE-GMIKEEGTYE 824 (1622)
T ss_pred hcCCEEEEEECCHh--HHHhCCEEEEEeC-CEEEEeCCHH
Confidence 37899999999984 5788999999996 9999999765
No 196
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=87.66 E-value=1 Score=32.50 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=30.1
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++.|++..-. . .|++++|.. |+++..|+..
T Consensus 204 ~~~tiii~sh~~~~~~-~-~dri~~l~~-G~i~~~g~~~ 239 (257)
T cd03288 204 ADRTVVTIAHRVSTIL-D-ADLVLVLSR-GILVECDTPE 239 (257)
T ss_pred CCCEEEEEecChHHHH-h-CCEEEEEEC-CEEEEeCCHH
Confidence 4789999999998643 3 899999997 8999998754
No 197
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.56 E-value=0.98 Score=32.26 Aligned_cols=37 Identities=11% Similarity=-0.073 Sum_probs=30.1
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++.|++. .+....|+++++.. |+.++.|+..
T Consensus 194 ~~~tiii~sh~~~-~~~~~~~~i~~l~~-G~i~~~g~~~ 230 (250)
T PRK14266 194 EDYTIVIVTHNMQ-QATRVSKYTSFFLN-GEIIESGLTD 230 (250)
T ss_pred cCCeEEEEECCHH-HHHhhcCEEEEEEC-CeEEEeCCHH
Confidence 4689999999875 45667899999987 8999998753
No 198
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=87.53 E-value=0.82 Score=35.34 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=31.1
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||++.|.... +..+.|++++|.. |+++..|+++
T Consensus 180 ~~Tii~vTHd~~e-a~~~~drI~vl~~-G~iv~~g~~~ 215 (363)
T TIGR01186 180 QKTIVFITHDLDE-AIRIGDRIVIMKA-GEIVQVGTPD 215 (363)
T ss_pred CCEEEEEeCCHHH-HHHhCCEEEEEeC-CEEEeeCCHH
Confidence 7899999998765 6778999999986 8999999755
No 199
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.49 E-value=0.92 Score=31.54 Aligned_cols=34 Identities=6% Similarity=0.011 Sum_probs=27.3
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR 38 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G 38 (98)
++.|||++-|.+.. +.++.|++++|.. |+++..|
T Consensus 178 ~~~tii~vsH~~~~-~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 178 EDRIVILSTHIVED-VESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred CCCEEEEEcCCHHH-HHHhCCEEEEEEC-CEEEecC
Confidence 35789999898864 6677899999997 8988765
No 200
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=87.47 E-value=0.92 Score=36.18 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=31.3
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
|++|+|+.-|.| +....+|++++|.. |+.+-.|+.+
T Consensus 517 ~~~tiIiitH~~--~~~~~~D~ii~l~~-g~i~~~g~~~ 552 (571)
T TIGR02203 517 QGRTTLVIAHRL--STIEKADRIVVMDD-GRIVERGTHN 552 (571)
T ss_pred CCCEEEEEehhh--HHHHhCCEEEEEeC-CEEEeeCCHH
Confidence 689999999998 56888999999986 8999888754
No 201
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=87.46 E-value=1.1 Score=33.34 Aligned_cols=36 Identities=6% Similarity=0.194 Sum_probs=30.1
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++.|.+.. + ...|++++|.. |++++.|+..
T Consensus 208 ~~~tIiiisH~~~~-~-~~~d~i~~l~~-G~i~~~g~~~ 243 (282)
T cd03291 208 ANKTRILVTSKMEH-L-KKADKILILHE-GSSYFYGTFS 243 (282)
T ss_pred CCCEEEEEeCChHH-H-HhCCEEEEEEC-CEEEEECCHH
Confidence 36899999999875 3 57999999997 8999999754
No 202
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=87.33 E-value=0.96 Score=35.82 Aligned_cols=37 Identities=14% Similarity=-0.028 Sum_probs=31.8
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|.+. .+..+.|++++|.. |++++.|+.+
T Consensus 444 ~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 480 (501)
T PRK10762 444 EGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTRE 480 (501)
T ss_pred CCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEeccc
Confidence 4789999999875 67788999999997 8999999876
No 203
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=87.30 E-value=0.94 Score=33.02 Aligned_cols=36 Identities=6% Similarity=-0.077 Sum_probs=29.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|.+. .+.++.|+++++ . |++++.|+..
T Consensus 191 ~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g~~~ 226 (272)
T PRK15056 191 EGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASGPTE 226 (272)
T ss_pred CCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHH
Confidence 4789999999875 566788999877 5 8999999765
No 204
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.22 E-value=1.2 Score=32.32 Aligned_cols=36 Identities=11% Similarity=-0.024 Sum_probs=29.5
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||++-|.+. ++.+..|++++|.. |+.+..|+..
T Consensus 210 ~~tiiivth~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 245 (265)
T PRK14252 210 KVTILIVTHNMQ-QAARVSDYTAYMYM-GELIEFGATD 245 (265)
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 578999888764 47778999999986 8999998753
No 205
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=87.07 E-value=0.84 Score=41.17 Aligned_cols=37 Identities=3% Similarity=0.106 Sum_probs=31.6
Q ss_pred CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.+++|||+.-|.++ ....+|+|++|.+ |+++-+|++.
T Consensus 1400 ~~~~TvI~IaHRl~--ti~~~DrIlvL~~-G~ivE~g~p~ 1436 (1490)
T TIGR01271 1400 FSNCTVILSEHRVE--ALLECQQFLVIEG-SSVKQYDSIQ 1436 (1490)
T ss_pred cCCCEEEEEecCHH--HHHhCCEEEEEEC-CEEEEeCCHH
Confidence 36899999999884 4566999999997 8999999875
No 206
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=86.70 E-value=1.3 Score=35.22 Aligned_cols=37 Identities=16% Similarity=-0.059 Sum_probs=31.7
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|.+. .+.++.|++++|.. |+++..|+..
T Consensus 454 ~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 490 (506)
T PRK13549 454 QGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINH 490 (506)
T ss_pred CCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEeccc
Confidence 4789999999885 67788999999997 8999988765
No 207
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=86.70 E-value=1.1 Score=31.24 Aligned_cols=34 Identities=15% Similarity=0.318 Sum_probs=27.7
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRE 39 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~ 39 (98)
++.|||++.|.+..- ...|++++|.. |+.+..|+
T Consensus 187 ~~~tii~~sh~~~~~--~~~d~i~~l~~-g~~~~~~~ 220 (221)
T cd03244 187 KDCTVLTIAHRLDTI--IDSDRILVLDK-GRVVEFDS 220 (221)
T ss_pred CCCEEEEEeCCHHHH--hhCCEEEEEEC-CeEEecCC
Confidence 467999999998653 34899999996 89998875
No 208
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=86.58 E-value=1.1 Score=30.15 Aligned_cols=32 Identities=6% Similarity=0.052 Sum_probs=26.0
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEE
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIY 36 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy 36 (98)
++.|||++-|++. .+-+..|+++++.. |+.++
T Consensus 131 ~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~ 162 (163)
T cd03216 131 QGVAVIFISHRLD-EVFEIADRVTVLRD-GRVVG 162 (163)
T ss_pred CCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEe
Confidence 3789999999876 46677999999987 88764
No 209
>PLN03232 ABC transporter C family member; Provisional
Probab=86.47 E-value=1.1 Score=40.50 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=32.1
Q ss_pred CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.|++|+|+.-|+++ ....+|++++|.. |+++..|+.+
T Consensus 788 l~~kT~IlvTH~~~--~l~~aD~Ii~L~~-G~i~~~Gt~~ 824 (1495)
T PLN03232 788 LKGKTRVLVTNQLH--FLPLMDRIILVSE-GMIKEEGTFA 824 (1495)
T ss_pred hcCCEEEEEECChh--hHHhCCEEEEEeC-CEEEEecCHH
Confidence 37899999999985 4788999999996 9999999754
No 210
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=86.40 E-value=1.4 Score=34.85 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=31.8
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQ 42 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~ 42 (98)
++.|||++-|.+. .+....|++++|.. |+++..|+..+
T Consensus 190 ~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 227 (501)
T PRK10762 190 QGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAEREVAD 227 (501)
T ss_pred CCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEecCcCc
Confidence 4679999999885 56788999999997 89999998763
No 211
>PLN03130 ABC transporter C family member; Provisional
Probab=86.35 E-value=0.93 Score=41.28 Aligned_cols=37 Identities=11% Similarity=0.274 Sum_probs=31.9
Q ss_pred CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.+++|||+--|..+. ...+|+|++|.+ |+++-+|++.
T Consensus 1421 ~~~~TvI~IAHRL~t--I~~~DrIlVLd~-G~IvE~Gt~~ 1457 (1622)
T PLN03130 1421 FKSCTMLIIAHRLNT--IIDCDRILVLDA-GRVVEFDTPE 1457 (1622)
T ss_pred CCCCEEEEEeCChHH--HHhCCEEEEEEC-CEEEEeCCHH
Confidence 378999999998876 445999999997 9999999876
No 212
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=86.30 E-value=1.2 Score=31.38 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=28.8
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFREL 40 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~ 40 (98)
+++|||++.|.+..- ...|++++|.. |+.+..|+.
T Consensus 185 ~~~tiii~sh~~~~~--~~~d~~~~l~~-g~i~~~~~~ 219 (236)
T cd03253 185 KGRTTIVIAHRLSTI--VNADKIIVLKD-GRIVERGTH 219 (236)
T ss_pred CCCEEEEEcCCHHHH--HhCCEEEEEEC-CEEEeeCCH
Confidence 378999999998754 34999999997 899988864
No 213
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=86.26 E-value=1.1 Score=33.93 Aligned_cols=37 Identities=14% Similarity=-0.054 Sum_probs=30.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|++.. +.+..|++++|.. |+++..|++.
T Consensus 273 ~~~Tii~iTH~l~~-i~~~~Driivl~~-G~i~e~g~~~ 309 (329)
T PRK14257 273 KKYSIIIVTHSMAQ-AQRISDETVFFYQ-GWIEEAGETK 309 (329)
T ss_pred cCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCHH
Confidence 56899999998654 4466999999997 8999999765
No 214
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=86.21 E-value=1.3 Score=31.78 Aligned_cols=37 Identities=5% Similarity=0.021 Sum_probs=29.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|.+.. +-++.|++++|.. |+.++.|+..
T Consensus 195 ~~~tilivsh~~~~-~~~~~d~i~~l~~-G~i~~~~~~~ 231 (251)
T PRK14249 195 QNYTIAIVTHNMQQ-AARASDWTGFLLT-GDLVEYGRTG 231 (251)
T ss_pred cCCEEEEEeCCHHH-HHhhCCEEEEEeC-CeEEEeCCHH
Confidence 46899999997755 4467899999986 8999998754
No 215
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=85.94 E-value=1.4 Score=34.64 Aligned_cols=37 Identities=5% Similarity=-0.210 Sum_probs=30.7
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|.+. .+.+..|++++|.. |++++.|+..
T Consensus 184 ~g~tvii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 220 (490)
T PRK10938 184 SGITLVLVLNRFD-EIPDFVQFAGVLAD-CTLAETGERE 220 (490)
T ss_pred cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEEeCCHH
Confidence 3679999999874 56688999999997 8999998754
No 216
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=85.86 E-value=1.2 Score=34.20 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=31.4
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|+|.+.|.+. +++++.|++++|.. |+++..|++.
T Consensus 187 g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~~~ 222 (351)
T PRK11432 187 NITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGSPQ 222 (351)
T ss_pred CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 689999999874 58889999999997 8999999865
No 217
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=85.81 E-value=1.5 Score=30.44 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=27.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRE 39 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~ 39 (98)
+++|+|++-|.+..- .. .|++++|.+ |+++..|+
T Consensus 173 ~~~tiii~th~~~~~-~~-~d~v~~l~~-g~i~~~g~ 206 (207)
T cd03369 173 TNSTILTIAHRLRTI-ID-YDKILVMDA-GEVKEYDH 206 (207)
T ss_pred CCCEEEEEeCCHHHH-hh-CCEEEEEEC-CEEEecCC
Confidence 478999999998864 34 799999997 89988875
No 218
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=85.56 E-value=1.1 Score=33.04 Aligned_cols=37 Identities=3% Similarity=-0.020 Sum_probs=31.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.+|+||.+-|- =.++=.+.|++++|.+ |++|+.|..+
T Consensus 182 egr~viFSSH~-m~EvealCDrvivlh~-Gevv~~gs~~ 218 (245)
T COG4555 182 EGRAVIFSSHI-MQEVEALCDRVIVLHK-GEVVLEGSIE 218 (245)
T ss_pred CCcEEEEeccc-HHHHHHhhheEEEEec-CcEEEcCCHH
Confidence 38999999874 4567779999999998 8999999865
No 219
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=85.53 E-value=1.6 Score=30.94 Aligned_cols=35 Identities=9% Similarity=-0.053 Sum_probs=29.1
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFREL 40 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~ 40 (98)
++.|||++-|.+..- ...|++++|.. |+.+..|+.
T Consensus 182 ~~~tiii~sH~~~~~--~~~d~i~~l~~-G~i~~~~~~ 216 (236)
T TIGR03864 182 QGLSVLWATHLVDEI--EADDRLVVLHR-GRVLADGAA 216 (236)
T ss_pred CCCEEEEEecChhhH--hhCCEEEEEeC-CeEEEeCCH
Confidence 378999999999764 34899999987 899998864
No 220
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=85.47 E-value=1.6 Score=33.88 Aligned_cols=36 Identities=11% Similarity=-0.017 Sum_probs=31.1
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||...|.+ .+++.+.|++++|.. |+++..|++.
T Consensus 195 g~tiI~vTHd~-~ea~~laDri~vl~~-G~i~~~g~~~ 230 (375)
T PRK09452 195 GITFVFVTHDQ-EEALTMSDRIVVMRD-GRIEQDGTPR 230 (375)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 78999988886 568889999999997 9999999754
No 221
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=85.22 E-value=1.3 Score=31.93 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=29.3
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|++.. +....|++++|.. |+.++.|+..
T Consensus 202 ~~tii~isH~~~~-~~~~~d~i~~l~~-g~i~~~~~~~ 237 (258)
T PRK11701 202 GLAVVIVTHDLAV-ARLLAHRLLVMKQ-GRVVESGLTD 237 (258)
T ss_pred CcEEEEEeCCHHH-HHHhcCEEEEEEC-CEEEEeCCHH
Confidence 7899999898754 4456899999997 8999999754
No 222
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.20 E-value=1.3 Score=36.49 Aligned_cols=36 Identities=8% Similarity=0.194 Sum_probs=32.0
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.+||+|+-.| .......||+|++|.. |++.-.|+..
T Consensus 535 ~~rTvI~IvH--~l~ll~~~DkI~~l~n-G~v~e~gth~ 570 (591)
T KOG0057|consen 535 SGRTVIMIVH--RLDLLKDFDKIIVLDN-GTVKEYGTHS 570 (591)
T ss_pred CCCeEEEEEe--cchhHhcCCEEEEEEC-CeeEEeccHH
Confidence 5899999999 5678899999999997 8999999865
No 223
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=85.18 E-value=1.6 Score=31.77 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=29.4
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||++-|.+..- ...|++++|.. |+.+..|+..
T Consensus 193 ~~tiii~sH~~~~~--~~~d~v~~l~~-G~i~~~g~~~ 227 (271)
T PRK13632 193 KKTLISITHDMDEA--ILADKVIVFSE-GKLIAQGKPK 227 (271)
T ss_pred CcEEEEEEechhHH--hhCCEEEEEEC-CEEEEecCHH
Confidence 48999999999753 36999999997 8999998754
No 224
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=85.16 E-value=1.4 Score=34.85 Aligned_cols=37 Identities=5% Similarity=0.064 Sum_probs=30.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|.+. .+....|++++|.+ |++++.|+..
T Consensus 190 ~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 226 (500)
T TIGR02633 190 HGVACVYISHKLN-EVKAVCDTICVIRD-GQHVATKDMS 226 (500)
T ss_pred CCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEeeecCcc
Confidence 4789999888765 56678999999997 8999999876
No 225
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=85.13 E-value=1.6 Score=32.49 Aligned_cols=37 Identities=3% Similarity=-0.013 Sum_probs=30.3
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQ 42 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~ 42 (98)
+|+||++.-|-.. .+.+.||+++.|+ ++.+++|++.+
T Consensus 188 eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~G~~~~ 224 (254)
T COG1121 188 EGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIASGPPEE 224 (254)
T ss_pred CCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEeccChhh
Confidence 3789998777654 5888999999997 48999999873
No 226
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=85.10 E-value=1.4 Score=30.71 Aligned_cols=33 Identities=9% Similarity=0.061 Sum_probs=25.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEec
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFR 38 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G 38 (98)
++.|||++-|.+. .+....|++++|.. | .++.|
T Consensus 181 ~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 181 EGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred cCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 4789999999876 56678899999975 4 56554
No 227
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=84.97 E-value=1.7 Score=32.92 Aligned_cols=37 Identities=8% Similarity=0.030 Sum_probs=31.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.+.|||+..|..+. +..+.|++++|.. |+++..|+..
T Consensus 203 ~g~til~iTHdl~~-~~~~adri~vm~~-G~ive~g~~~ 239 (326)
T PRK11022 203 ENMALVLITHDLAL-VAEAAHKIIVMYA-GQVVETGKAH 239 (326)
T ss_pred cCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEECCHH
Confidence 37899999998874 5677999999997 9999999754
No 228
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=84.82 E-value=1.5 Score=34.98 Aligned_cols=36 Identities=11% Similarity=-0.051 Sum_probs=30.1
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++.|.+. .+....|++++|.. |++++.|+..
T Consensus 207 g~tvi~vtHd~~-~~~~~~dri~~l~~-G~i~~~g~~~ 242 (529)
T PRK15134 207 NMGLLFITHNLS-IVRKLADRVAVMQN-GRCVEQNRAA 242 (529)
T ss_pred CCeEEEEcCcHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 789999999876 45577999999997 8999998754
No 229
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=84.81 E-value=1.4 Score=34.76 Aligned_cols=38 Identities=11% Similarity=0.081 Sum_probs=31.5
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQ 42 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~ 42 (98)
++.|||++-|.+. .+....|++++|.. |+++..|+...
T Consensus 183 ~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 183 RGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred CCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 4789999989875 56678999999997 89999998663
No 230
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=84.53 E-value=0.8 Score=37.56 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=31.3
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+|.|+|+--|.|| ++...|+|++|.. |++--||+..
T Consensus 521 rG~~vvviaHRPs--~L~~~Dkilvl~~-G~~~~FG~r~ 556 (580)
T COG4618 521 RGGTVVVIAHRPS--ALASVDKILVLQD-GRIAAFGPRE 556 (580)
T ss_pred cCCEEEEEecCHH--HHhhcceeeeecC-ChHHhcCCHH
Confidence 5778888899776 6888999999996 9999999876
No 231
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=84.32 E-value=1.4 Score=35.06 Aligned_cols=37 Identities=11% Similarity=-0.067 Sum_probs=30.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|.+.. +....|++++|.+ |++++.|+..
T Consensus 189 ~g~tiiivtHd~~~-~~~~~d~i~~l~~-G~i~~~g~~~ 225 (510)
T PRK15439 189 QGVGIVFISHKLPE-IRQLADRISVMRD-GTIALSGKTA 225 (510)
T ss_pred CCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEecChH
Confidence 47899999998764 5678999999997 8999999865
No 232
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=83.99 E-value=1.4 Score=33.94 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=30.9
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|+|.+-|.+. ++..+.|++++|.+ |+.+..|++.
T Consensus 189 g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~~g~~~ 224 (362)
T TIGR03258 189 ELTILCVTHDQD-DALTLADKAGIMKD-GRLAAHGEPQ 224 (362)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 679999999875 47888999999997 8999999864
No 233
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=83.73 E-value=0.94 Score=33.70 Aligned_cols=30 Identities=10% Similarity=0.079 Sum_probs=24.7
Q ss_pred CCceEEEEecCCcHHHH------------hhccceEeecCCCe
Q 037141 3 KTNCSNTILSSSSCSRL------------FNLKDLMLMKRGGK 33 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~------------~~FD~lllL~~gG~ 33 (98)
+|.+||.|.|.++.+-. .+||++++|++ |+
T Consensus 218 ~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~-~~ 259 (270)
T TIGR02858 218 AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSR-RK 259 (270)
T ss_pred CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEec-CC
Confidence 57899999998877544 77999999997 55
No 234
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=83.69 E-value=1.1 Score=37.78 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=32.0
Q ss_pred CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
..+||+|+.-|.++ .+...|+++||.+ |+++-.|+.+
T Consensus 656 ~~~~T~I~IaHRl~--ti~~adrIiVl~~-Gkiv~~gs~~ 692 (709)
T COG2274 656 LQGRTVIIIAHRLS--TIRSADRIIVLDQ-GKIVEQGSHE 692 (709)
T ss_pred hcCCeEEEEEccch--HhhhccEEEEccC-CceeccCCHH
Confidence 35799999999776 4778999999997 9999999865
No 235
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=83.45 E-value=1.6 Score=35.07 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=25.8
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEE
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKII 35 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~v 35 (98)
+++|||+.-|.++ ..+..|++++|.. |+.+
T Consensus 520 ~~~tiiiisH~~~--~~~~~d~i~~l~~-G~i~ 549 (555)
T TIGR01194 520 QGKTIIIISHDDQ--YFELADQIIKLAA-GCIV 549 (555)
T ss_pred CCCEEEEEeccHH--HHHhCCEEEEEEC-CEEE
Confidence 5899999999985 5789999999997 7775
No 236
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=83.41 E-value=2.1 Score=33.95 Aligned_cols=37 Identities=11% Similarity=-0.033 Sum_probs=30.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|.+ ..+..+.|++++|.. |++++.|+..
T Consensus 194 ~g~tiiivsHd~-~~~~~~~d~v~~l~~-G~i~~~g~~~ 230 (510)
T PRK09700 194 EGTAIVYISHKL-AEIRRICDRYTVMKD-GSSVCSGMVS 230 (510)
T ss_pred CCCEEEEEeCCH-HHHHHhCCEEEEEEC-CEEeeecchh
Confidence 368999988875 445577899999996 8999999875
No 237
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=83.36 E-value=2.2 Score=33.79 Aligned_cols=36 Identities=6% Similarity=0.003 Sum_probs=30.3
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFREL 40 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~ 40 (98)
++.|||++-|.+. .+....|++++|.. |+++..++.
T Consensus 458 ~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 458 DGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred CCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 4789999999874 66788999999997 899988865
No 238
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=83.35 E-value=1.7 Score=34.54 Aligned_cols=36 Identities=17% Similarity=0.083 Sum_probs=30.4
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|.+. .+.++.|++++|.. |+++..|++.
T Consensus 478 g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 513 (520)
T TIGR03269 478 EQTFIIVSHDMD-FVLDVCDRAALMRD-GKIVKIGDPE 513 (520)
T ss_pred CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 689999999886 57788999999997 8999988643
No 239
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=82.95 E-value=1.9 Score=32.98 Aligned_cols=36 Identities=8% Similarity=0.053 Sum_probs=30.6
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+-||+.|-|- =.+|-.+.|+|+++.. |+.+|.|+..
T Consensus 207 ~aTVllTTH~-~~di~~lc~rv~~I~~-Gqlv~dg~l~ 242 (325)
T COG4586 207 QATVLLTTHI-FDDIATLCDRVLLIDQ-GQLVFDGTLA 242 (325)
T ss_pred CceEEEEecc-hhhHHHhhhheEEeeC-CcEeecccHH
Confidence 4588888774 5678899999999998 8999999876
No 240
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=82.80 E-value=2.3 Score=31.13 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=30.1
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|.+..-. ..|++++|.. |+.+..|+..
T Consensus 191 g~tiil~sH~~~~~~--~~d~i~~l~~-G~i~~~g~~~ 225 (277)
T PRK13642 191 QLTVLSITHDLDEAA--SSDRILVMKA-GEIIKEAAPS 225 (277)
T ss_pred CCEEEEEeCCHHHHH--hCCEEEEEEC-CEEEEeCCHH
Confidence 789999999998853 5899999997 8999998754
No 241
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=82.76 E-value=2 Score=35.47 Aligned_cols=36 Identities=6% Similarity=0.079 Sum_probs=31.0
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|++++-|++. ..+..|++++|.. |+.+..|+..
T Consensus 193 ~g~tilivsH~~~--~~~~~d~i~~l~~-G~i~~~g~~~ 228 (648)
T PRK10535 193 RGHTVIIVTHDPQ--VAAQAERVIEIRD-GEIVRNPPAQ 228 (648)
T ss_pred cCCEEEEECCCHH--HHHhCCEEEEEEC-CEEEeecCcc
Confidence 4789999999987 3357999999997 9999999876
No 242
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=82.23 E-value=1.7 Score=30.39 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=23.4
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEE
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKII 35 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~v 35 (98)
++|||++-|.+.. + ...|++++|.. |+++
T Consensus 192 ~~tii~~tH~~~~-~-~~~d~v~~l~~-G~i~ 220 (221)
T TIGR02211 192 NTSFLVVTHDLEL-A-KKLDRVLEMKD-GQLF 220 (221)
T ss_pred CCEEEEEeCCHHH-H-hhcCEEEEEeC-CEec
Confidence 7899999999873 4 44799999986 7764
No 243
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=81.85 E-value=2 Score=34.42 Aligned_cols=34 Identities=12% Similarity=0.160 Sum_probs=28.0
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRE 39 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~ 39 (98)
+++|||+.-|.+ +....+|++++|.. |+.+-...
T Consensus 499 ~~~tvi~itH~~--~~~~~~d~i~~l~~-G~i~e~~~ 532 (547)
T PRK10522 499 MGKTIFAISHDD--HYFIHADRLLEMRN-GQLSELTG 532 (547)
T ss_pred CCCEEEEEEech--HHHHhCCEEEEEEC-CEEEEecC
Confidence 379999999998 45788999999997 78876643
No 244
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=81.76 E-value=2.5 Score=32.04 Aligned_cols=36 Identities=14% Similarity=-0.048 Sum_probs=29.9
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||+..|-.+ .+..+-|++++|.. |+++..|+..
T Consensus 205 g~til~iTHdl~-~~~~~adrv~vm~~-G~ive~g~~~ 240 (327)
T PRK11308 205 GLSYVFISHDLS-VVEHIADEVMVMYL-GRCVEKGTKE 240 (327)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 789999888765 55667899999997 8999999754
No 245
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=81.47 E-value=3 Score=31.50 Aligned_cols=36 Identities=6% Similarity=-0.137 Sum_probs=30.0
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|... .+..+.|++++|.. |+++..|+..
T Consensus 209 g~tii~itHdl~-~v~~~~dri~vm~~-G~ive~g~~~ 244 (330)
T PRK15093 209 NTTILLISHDLQ-MLSQWADKINVLYC-GQTVETAPSK 244 (330)
T ss_pred CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 789999989864 45578999999997 8999999754
No 246
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=81.31 E-value=2 Score=40.63 Aligned_cols=43 Identities=9% Similarity=0.056 Sum_probs=34.7
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhh
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECF 51 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf 51 (98)
+++|||++-|.+. ++-.+.|++++|++ |+.+..|+.. .+..-|
T Consensus 1109 ~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~Gs~~----~Lk~~~ 1151 (2272)
T TIGR01257 1109 SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSGTPL----FLKNCF 1151 (2272)
T ss_pred CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEecCHH----HHHHhc
Confidence 5899999999875 56667899999997 8999999865 555544
No 247
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=81.27 E-value=2.6 Score=31.07 Aligned_cols=36 Identities=6% Similarity=0.075 Sum_probs=28.1
Q ss_pred CceEEEEecCCcHHHHhhccceE-eecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLM-LMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~ll-lL~~gG~~vy~G~~~ 41 (98)
.+|||++-|.+. .+..+.|+++ +|.. |+++..|+..
T Consensus 229 ~~tiii~tH~~~-~i~~~~dri~v~l~~-G~i~~~g~~~ 265 (285)
T PRK14254 229 EYTVVIVTHNMQ-QAARISDKTAVFLTG-GELVEFDDTD 265 (285)
T ss_pred CCEEEEEeCCHH-HHHhhcCEEEEEeeC-CEEEEeCCHH
Confidence 479999999876 6667789975 5676 8999998643
No 248
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=81.20 E-value=2.9 Score=33.26 Aligned_cols=37 Identities=14% Similarity=-0.031 Sum_probs=31.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|.+. .+.++.|++++|.. |++++.|...
T Consensus 452 ~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~ 488 (510)
T PRK15439 452 QNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGA 488 (510)
T ss_pred CCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 4789999999885 57788999999996 8999988765
No 249
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=80.81 E-value=2.7 Score=33.43 Aligned_cols=36 Identities=6% Similarity=-0.213 Sum_probs=30.1
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|.+.. +.+..|++++|.. |++++.|+..
T Consensus 219 g~tviivtHd~~~-~~~~~d~i~~l~~-G~i~~~g~~~ 254 (520)
T TIGR03269 219 GISMVLTSHWPEV-IEDLSDKAIWLEN-GEIKEEGTPD 254 (520)
T ss_pred CcEEEEEeCCHHH-HHHhcCEEEEEeC-CEEeeecCHH
Confidence 7899999998765 5678999999997 8999988754
No 250
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.48 E-value=3 Score=31.23 Aligned_cols=36 Identities=14% Similarity=0.013 Sum_probs=30.1
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+-|+|+.-|+-. +++..-|++.+|+. |++++.|+++
T Consensus 196 g~T~i~VTHDl~-s~~~i~Drv~~L~~-gkv~~~Gt~~ 231 (263)
T COG1127 196 GLTVIMVTHDLD-SLLTIADRVAVLAD-GKVIAEGTPE 231 (263)
T ss_pred CCEEEEEECChH-HHHhhhceEEEEeC-CEEEEeCCHH
Confidence 457777778754 58888999999997 9999999976
No 251
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=80.35 E-value=2.7 Score=33.31 Aligned_cols=35 Identities=6% Similarity=0.018 Sum_probs=29.0
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRE 39 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~ 39 (98)
++.|||++-|.+. .+....|++++|.+ |+++..++
T Consensus 189 ~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~ 223 (501)
T PRK11288 189 EGRVILYVSHRME-EIFALCDAITVFKD-GRYVATFD 223 (501)
T ss_pred CCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecC
Confidence 4789999999876 56678999999997 89887665
No 252
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=80.34 E-value=2.5 Score=34.85 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=32.0
Q ss_pred CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.+++|+++.-|.-.. .+.||+|++|.+ |+++..|..+
T Consensus 521 ~~~kTll~vTHrL~~--le~~drIivl~~-Gkiie~G~~~ 557 (573)
T COG4987 521 AEGKTLLMVTHRLRG--LERMDRIIVLDN-GKIIEEGTHA 557 (573)
T ss_pred hcCCeEEEEeccccc--HhhcCEEEEEEC-CeeeecCCHH
Confidence 378999999997655 778999999997 9999999876
No 253
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=80.26 E-value=2.7 Score=29.54 Aligned_cols=30 Identities=3% Similarity=-0.068 Sum_probs=24.5
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEE
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIY 36 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy 36 (98)
+.|||++-|.+.. + ...|++++|.. |+++.
T Consensus 197 ~~tii~~sH~~~~-~-~~~d~i~~l~~-g~i~~ 226 (228)
T PRK10584 197 GTTLILVTHDLQL-A-ARCDRRLRLVN-GQLQE 226 (228)
T ss_pred CCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEe
Confidence 7899999999984 4 55899999986 77753
No 254
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.23 E-value=2.2 Score=38.56 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=34.2
Q ss_pred CCCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 1 MIKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 1 ~~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.+++|+|...| ..+.+...|.|++|+. |+++..|+..
T Consensus 690 ~L~~KT~ILVTH--ql~~L~~ad~Iivl~~-G~I~~~Gty~ 727 (1381)
T KOG0054|consen 690 LLRGKTVILVTH--QLQFLPHADQIIVLKD-GKIVESGTYE 727 (1381)
T ss_pred hhcCCEEEEEeC--chhhhhhCCEEEEecC-CeEecccCHH
Confidence 457899999999 6788999999999996 9999999887
No 255
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=80.00 E-value=2.7 Score=38.06 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=30.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|+|+.-|++.. ....|++++|.+ |+++..|+..
T Consensus 811 ~~~tvIlvTH~~~~--l~~~D~ii~l~~-G~i~~~g~~~ 846 (1522)
T TIGR00957 811 KNKTRILVTHGISY--LPQVDVIIVMSG-GKISEMGSYQ 846 (1522)
T ss_pred cCCEEEEEeCChhh--hhhCCEEEEecC-CeEEeeCCHH
Confidence 57899999999864 456999999996 8999999864
No 256
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=79.81 E-value=2.6 Score=34.55 Aligned_cols=36 Identities=11% Similarity=-0.094 Sum_probs=30.5
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||+.-|.+. .+..+.|++++|.. |+++..|+..
T Consensus 514 g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~~ 549 (623)
T PRK10261 514 GIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPRR 549 (623)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 679999999875 56678999999997 8999999765
No 257
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=78.85 E-value=3.5 Score=30.72 Aligned_cols=36 Identities=3% Similarity=0.064 Sum_probs=28.6
Q ss_pred CceEEEEecCCcHHHHhhccce-EeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDL-MLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~l-llL~~gG~~vy~G~~~ 41 (98)
..|||++-|++.. +.++.|++ ++|.. |+++..|+..
T Consensus 249 ~~tiiivtH~~~~-i~~~~d~i~~~l~~-G~i~~~g~~~ 285 (305)
T PRK14264 249 EYTVVVVTHNMQQ-AARISDQTAVFLTG-GELVEYDDTD 285 (305)
T ss_pred CCEEEEEEcCHHH-HHHhcCEEEEEecC-CEEEEeCCHH
Confidence 4799999998865 56778996 56786 8999999753
No 258
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=78.22 E-value=3.9 Score=32.63 Aligned_cols=35 Identities=6% Similarity=0.029 Sum_probs=29.3
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFREL 40 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~ 40 (98)
+.|||++-|.+.. +.+..|++++|.. |+++..|+.
T Consensus 476 ~~tvi~vsHd~~~-~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 476 QLAYLFISHDLHV-VRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred CCEEEEEeCCHHH-HHHhcCeEEEEEC-CEEEEEcCH
Confidence 7899999897754 6678999999997 899998864
No 259
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=78.19 E-value=3.1 Score=39.41 Aligned_cols=45 Identities=13% Similarity=0.060 Sum_probs=37.0
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhh
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEG 53 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~ 53 (98)
+|+|||+|-|... ++-.+.|++++|.. |+.+..|+++ ++..-|..
T Consensus 2119 ~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs~q----~Lk~~~g~ 2163 (2272)
T TIGR01257 2119 EGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGTIQ----HLKSKFGD 2163 (2272)
T ss_pred CCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH----HHHHHhCC
Confidence 4789999999865 67788999999997 9999999876 56665543
No 260
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=77.99 E-value=4.4 Score=32.00 Aligned_cols=37 Identities=11% Similarity=-0.096 Sum_probs=30.5
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|.+. .+.++.|++++|.. |+++..++..
T Consensus 452 ~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 488 (500)
T TIGR02633 452 EGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVNH 488 (500)
T ss_pred CCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 4789999999885 67788999999986 8998877543
No 261
>PTZ00243 ABC transporter; Provisional
Probab=77.88 E-value=3.6 Score=37.48 Aligned_cols=36 Identities=3% Similarity=0.001 Sum_probs=31.0
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|+|+..|++.. ....|++++|.+ |++++.|+..
T Consensus 831 ~~~TvIlvTH~~~~--~~~ad~ii~l~~-G~i~~~G~~~ 866 (1560)
T PTZ00243 831 AGKTRVLATHQVHV--VPRADYVVALGD-GRVEFSGSSA 866 (1560)
T ss_pred CCCEEEEEeCCHHH--HHhCCEEEEEEC-CEEEEecCHH
Confidence 68999999999865 467999999996 8999999764
No 262
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=77.56 E-value=4.6 Score=30.62 Aligned_cols=36 Identities=8% Similarity=-0.041 Sum_probs=29.9
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||+..|... .+..+.|++++|.. |+++..|+..
T Consensus 212 ~~til~iTHdl~-~~~~~~dri~vl~~-G~ive~g~~~ 247 (331)
T PRK15079 212 GLSLIFIAHDLA-VVKHISDRVLVMYL-GHAVELGTYD 247 (331)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 789999989875 45567899999997 8999999754
No 263
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=77.07 E-value=4.6 Score=35.19 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=30.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeec-----CCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMK-----RGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~-----~gG~~vy~G~~~ 41 (98)
+|.|||++-|.+.. ....|+++.|. .||++++.|++.
T Consensus 882 ~G~TVIiitH~~~~--i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~ 923 (943)
T PRK00349 882 KGNTVVVIEHNLDV--IKTADWIIDLGPEGGDGGGEIVATGTPE 923 (943)
T ss_pred CCCEEEEEecCHHH--HHhCCEEEEecCCcCCCCCEEEEeCCHH
Confidence 57899999999854 46799999994 359999999754
No 264
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.92 E-value=3.5 Score=35.80 Aligned_cols=37 Identities=14% Similarity=0.097 Sum_probs=30.5
Q ss_pred CCceEEEEecCCcHHHHhhccceEeec-----CCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMK-----RGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~-----~gG~~vy~G~~~ 41 (98)
+|.|||++-|.+.. ....|++++|. .||++++.|++.
T Consensus 880 ~G~TVIvi~H~~~~--i~~aD~ii~Lgp~~G~~gG~iv~~G~~~ 921 (924)
T TIGR00630 880 QGNTVVVIEHNLDV--IKTADYIIDLGPEGGDGGGTIVASGTPE 921 (924)
T ss_pred CCCEEEEEeCCHHH--HHhCCEEEEecCCccCCCCEEEEeCCHH
Confidence 57899999999963 36799999993 369999999764
No 265
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=76.53 E-value=5 Score=31.77 Aligned_cols=38 Identities=16% Similarity=0.009 Sum_probs=31.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQ 42 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~ 42 (98)
.+.|||++-|.+.. +.+..|+++++.. |+.++.|...+
T Consensus 445 ~g~tviivsHd~~~-~~~~~d~i~~l~~-g~i~~~~~~~~ 482 (501)
T PRK11288 445 QGVAVLFVSSDLPE-VLGVADRIVVMRE-GRIAGELAREQ 482 (501)
T ss_pred CCCEEEEECCCHHH-HHhhCCEEEEEEC-CEEEEEEcccc
Confidence 37899999998854 6788999999996 89999998764
No 266
>PRK10908 cell division protein FtsE; Provisional
Probab=76.22 E-value=3.8 Score=28.66 Aligned_cols=30 Identities=3% Similarity=-0.106 Sum_probs=23.7
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeE
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKI 34 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~ 34 (98)
++.|||++-|.+.. +-...|++++|.+ |+.
T Consensus 186 ~~~tiii~sH~~~~-~~~~~d~i~~l~~-G~i 215 (222)
T PRK10908 186 VGVTVLMATHDIGL-ISRRSYRMLTLSD-GHL 215 (222)
T ss_pred CCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEE
Confidence 36799999998764 5567899999987 774
No 267
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=76.18 E-value=5.3 Score=31.51 Aligned_cols=37 Identities=16% Similarity=0.038 Sum_probs=30.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|.+.. +..+.|++++|.. |+.+..++.+
T Consensus 440 ~~~tvi~vsHd~~~-~~~~~d~v~~l~~-g~i~~~~~~~ 476 (491)
T PRK10982 440 KDKGIIIISSEMPE-LLGITDRILVMSN-GLVAGIVDTK 476 (491)
T ss_pred CCCEEEEECCChHH-HHhhCCEEEEEEC-CEEEEEEccc
Confidence 47899999999854 6688999999997 8999877654
No 268
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=75.43 E-value=4.3 Score=36.82 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=30.8
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||+.-|++.. ....|++++|.. |+++..|+..
T Consensus 597 ~~~tvilvtH~~~~--~~~ad~ii~l~~-g~i~~~g~~~ 632 (1490)
T TIGR01271 597 SNKTRILVTSKLEH--LKKADKILLLHE-GVCYFYGTFS 632 (1490)
T ss_pred cCCeEEEEeCChHH--HHhCCEEEEEEC-CEEEEEcCHH
Confidence 68999999999975 456999999996 8999999754
No 269
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=74.43 E-value=5.5 Score=28.79 Aligned_cols=35 Identities=3% Similarity=-0.059 Sum_probs=28.7
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|.+. .+.+..|++++|. |+++..|+..
T Consensus 171 g~tiiivsH~~~-~i~~~~d~i~~l~--~~i~~~g~~~ 205 (251)
T PRK09544 171 DCAVLMVSHDLH-LVMAKTDEVLCLN--HHICCSGTPE 205 (251)
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEC--CceEeeCCHH
Confidence 789999999876 6778899999995 3688888754
No 270
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=74.34 E-value=4.8 Score=32.15 Aligned_cols=36 Identities=8% Similarity=0.014 Sum_probs=29.1
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeE-EEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKI-IYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~-vy~G~~~ 41 (98)
+.|||++-|.+. .+....|++++|.. |++ +|.|+..
T Consensus 202 ~~tiiivsHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~~ 238 (530)
T PRK15064 202 NSTMIIISHDRH-FLNSVCTHMADLDY-GELRVYPGNYD 238 (530)
T ss_pred CCeEEEEeCCHH-HHHhhcceEEEEeC-CEEEEecCCHH
Confidence 678999888877 56788999999997 888 5788653
No 271
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=74.21 E-value=5 Score=37.34 Aligned_cols=37 Identities=8% Similarity=0.105 Sum_probs=31.5
Q ss_pred CCceEEEEecCCcHHHHhhccceEeec-----CCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMK-----RGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~-----~gG~~vy~G~~~ 41 (98)
+|.|||+.-|.+. +.+..|++++|. .||++++.|+..
T Consensus 527 ~G~TVIvVeHd~~--vi~~aDrVi~L~pGag~~gG~Iv~~G~~~ 568 (1809)
T PRK00635 527 QGNTVLLVEHDEQ--MISLADRIIDIGPGAGIFGGEVLFNGSPR 568 (1809)
T ss_pred CCCEEEEEeCcHH--HHHhCCEEEEEcCCcccCCCEEEEecCHH
Confidence 5889999999987 679999999996 358999999864
No 272
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=73.25 E-value=3.8 Score=28.42 Aligned_cols=34 Identities=3% Similarity=-0.210 Sum_probs=28.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRE 39 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~ 39 (98)
++.++|++.|. .++..++|+++++.. |++++.+.
T Consensus 140 ~~~~vi~~tH~--~~l~~~~d~~~~l~~-g~l~~~~~ 173 (200)
T cd03280 140 RGALVIATTHY--GELKAYAYKREGVEN-ASMEFDPE 173 (200)
T ss_pred cCCEEEEECCH--HHHHHHHhcCCCeEE-EEEEEecC
Confidence 47899999996 578899999999987 89998853
No 273
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.55 E-value=6.7 Score=34.17 Aligned_cols=37 Identities=8% Similarity=0.059 Sum_probs=30.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEeec-----CCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMK-----RGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~-----~gG~~vy~G~~~ 41 (98)
+|.|||++-|.+.. ....|++++|. .||++++.|+..
T Consensus 538 ~G~TVIvVeHd~~~--i~~aD~vi~LgpgaG~~~G~Iv~~g~~~ 579 (924)
T TIGR00630 538 LGNTVIVVEHDEET--IRAADYVIDIGPGAGIHGGEVVASGTPE 579 (924)
T ss_pred CCCEEEEEECCHHH--HhhCCEEEEecccccCCCCEEeeccCHH
Confidence 58899999999753 45899999992 359999999865
No 274
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=70.23 E-value=11 Score=26.11 Aligned_cols=36 Identities=3% Similarity=-0.052 Sum_probs=25.9
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEe--cCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYF--RELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~--G~~~ 41 (98)
+.|||++-|.+. .+-.+.|++++|.. +-.+|- |.++
T Consensus 122 ~~tiiivsH~~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~ 159 (177)
T cd03222 122 KKTALVVEHDLA-VLDYLSDRIHVFEG-EPGVYGIASQPK 159 (177)
T ss_pred CCEEEEEECCHH-HHHHhCCEEEEEcC-CCccceeccCCc
Confidence 379999999873 45567899999986 445543 6555
No 275
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=69.01 E-value=8.4 Score=29.93 Aligned_cols=34 Identities=9% Similarity=0.073 Sum_probs=26.9
Q ss_pred eEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 6 CSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 6 tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
|++..-| =-.++++++|+|++|++ |++.-.|++.
T Consensus 190 ttvfVTH-D~eea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 190 TTVFVTH-DQEEALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred eEEEEeC-CHHHHHhhcceEEEecC-CeeeeeCCHH
Confidence 4444444 45789999999999998 8999999865
No 276
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=66.48 E-value=16 Score=26.41 Aligned_cols=51 Identities=4% Similarity=-0.037 Sum_probs=32.4
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEE--EecCCCCChhHHHHhhhhCCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKII--YFRELGQNSSKLIECFEGTSGV 57 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~v--y~G~~~~~~~~~~~yf~~i~G~ 57 (98)
++|||++-|.+. .+..+.|++++|.. +..+ ..+++..-...+..|++. .+.
T Consensus 166 ~~tiiivsHd~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 218 (246)
T cd03237 166 EKTAFVVEHDII-MIDYLADRLIVFEG-EPSVNGVANPPQSLRSGMNRFLKN-LDI 218 (246)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEcC-CCeeEEEeCCchHHHHHHHHHHHH-CCC
Confidence 789999999875 56678999999963 3223 334433212245567766 455
No 277
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=66.45 E-value=7.7 Score=31.84 Aligned_cols=36 Identities=8% Similarity=-0.048 Sum_probs=29.1
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|.. ..+.++.|++++|.. |+++..|+..
T Consensus 219 g~tvi~itHdl-~~~~~~adri~vl~~-G~i~~~g~~~ 254 (623)
T PRK10261 219 SMGVIFITHDM-GVVAEIADRVLVMYQ-GEAVETGSVE 254 (623)
T ss_pred CCEEEEEcCCH-HHHHHhCCEEEEeeC-CeecccCCHH
Confidence 67999888875 445678999999997 8999888754
No 278
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=65.96 E-value=11 Score=32.90 Aligned_cols=36 Identities=8% Similarity=0.016 Sum_probs=30.1
Q ss_pred CCceEEEEecCCcHHHHhhccceEee------cCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLM------KRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL------~~gG~~vy~G~~~ 41 (98)
+|.|||+.-|.+.. + ...|++++| . ||++++.|+..
T Consensus 540 ~G~TVIvVeH~~~~-i-~~aD~vi~LgpgaG~~-~G~iv~~g~~~ 581 (943)
T PRK00349 540 LGNTLIVVEHDEDT-I-RAADYIVDIGPGAGVH-GGEVVASGTPE 581 (943)
T ss_pred CCCEEEEEeCCHHH-H-HhCCEEEEeccccCCC-CCEEeeccCHH
Confidence 58899999999774 4 469999999 5 58999999865
No 279
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=65.95 E-value=9.7 Score=30.39 Aligned_cols=34 Identities=0% Similarity=-0.089 Sum_probs=27.8
Q ss_pred ceEEEEecCCcHHHHhhccceEeecCCCeEE-EecCC
Q 037141 5 NCSNTILSSSSCSRLFNLKDLMLMKRGGKII-YFREL 40 (98)
Q Consensus 5 ~tvi~tIhQPs~~i~~~FD~lllL~~gG~~v-y~G~~ 40 (98)
.|||++-|.+. .+....|++++|.. |+.+ +.|+.
T Consensus 486 ~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~ 520 (530)
T PRK15064 486 GTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFSGTY 520 (530)
T ss_pred CEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcCCCH
Confidence 48999999885 67777899999997 7887 77753
No 280
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=64.60 E-value=9.5 Score=27.80 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=29.3
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||+.-|.- ..+...-|++++|.. |+.++.|++.
T Consensus 189 ~~tii~~tHd~-~~~~~~ad~v~vl~~-G~i~~~g~p~ 224 (235)
T COG1122 189 GKTIIIVTHDL-ELVLEYADRVVVLDD-GKILADGDPA 224 (235)
T ss_pred CCeEEEEeCcH-HHHHhhCCEEEEEEC-CEEeecCCHH
Confidence 57899888864 457777999999997 8999999753
No 281
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=64.50 E-value=10 Score=28.29 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=36.7
Q ss_pred CCceEEEEecCCcHHHHhhc--cceEeecCCCeEEEecCCCCChhHHHHhhhhCCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNL--KDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGV 57 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~F--D~lllL~~gG~~vy~G~~~~~~~~~~~yf~~i~G~ 57 (98)
+++.+++-.|. .+++... |++.||.. |++|-.|.+ .+..+++. -|+
T Consensus 193 ~~~~~liITHy--~rll~~i~pD~vhvl~~-GrIv~sG~~-----el~~~le~-~gy 240 (251)
T COG0396 193 EGRGVLIITHY--QRLLDYIKPDKVHVLYD-GRIVKSGDP-----ELAEELEE-KGY 240 (251)
T ss_pred CCCeEEEEecH--HHHHhhcCCCEEEEEEC-CEEEecCCH-----HHHHHHHH-hch
Confidence 46677777785 4677777 99999997 999999986 48888888 687
No 282
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=60.58 E-value=11 Score=27.09 Aligned_cols=27 Identities=11% Similarity=-0.160 Sum_probs=22.8
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGG 32 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG 32 (98)
+.+||++-|. .+++...|+++++.+.+
T Consensus 209 g~~vi~isH~--~~~~~~~d~i~~~~~~~ 235 (247)
T cd03275 209 NFQFIVISLK--EEFFSKADALVGVYRDQ 235 (247)
T ss_pred CcEEEEEECC--HHHHhhCCeEEEEEecC
Confidence 7899999998 56788999999998754
No 283
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=60.33 E-value=13 Score=33.99 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=29.8
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
|+.||++--|.=.. |.+ -|||+||.. |+++.+|.+.
T Consensus 1323 ~dcTVltIAHRl~T-Vmd-~DrVlVld~-G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1323 KDCTVLTIAHRLNT-VMD-SDRVLVLDA-GRVVEFDSPA 1358 (1381)
T ss_pred cCCeEEEEeeccch-hhh-cCeEEEeeC-CeEeecCChH
Confidence 78899988886654 444 799999998 9999999987
No 284
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=60.17 E-value=13 Score=30.72 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=27.5
Q ss_pred eEEEEecCCcHHHHhhccceEeecCCCeEE-EecCCC
Q 037141 6 CSNTILSSSSCSRLFNLKDLMLMKRGGKII-YFRELG 41 (98)
Q Consensus 6 tvi~tIhQPs~~i~~~FD~lllL~~gG~~v-y~G~~~ 41 (98)
|||++-|.+. .+..+.|++++|.. |+++ |.|+..
T Consensus 479 tvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~g~~~ 513 (638)
T PRK10636 479 ALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFDGDLE 513 (638)
T ss_pred eEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcCCCHH
Confidence 8898888764 57788999999996 8887 788643
No 285
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=60.05 E-value=12 Score=26.12 Aligned_cols=28 Identities=7% Similarity=0.042 Sum_probs=22.6
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCe
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGK 33 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~ 33 (98)
+.|||++.|.+. .....|+++.|.++|+
T Consensus 173 ~~~iiiitH~~~--~~~~~d~i~~l~~~~~ 200 (204)
T cd03240 173 NFQLIVITHDEE--LVDAADHIYRVEKDGR 200 (204)
T ss_pred CCEEEEEEecHH--HHhhCCEEEEEeeCCC
Confidence 679999999865 4567999999987663
No 286
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=59.89 E-value=14 Score=33.65 Aligned_cols=37 Identities=8% Similarity=0.050 Sum_probs=29.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCC---CeE-EEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRG---GKI-IYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~g---G~~-vy~G~~~ 41 (98)
++||+|+.-|+++. ...+|+|++|..| |+. +-.|+.+
T Consensus 1408 ~~~TvIiIaHRlst--i~~aD~Ivvl~~~~~~G~iv~e~Gth~ 1448 (1466)
T PTZ00265 1408 ADKTIITIAHRIAS--IKRSDKIVVFNNPDRTGSFVQAHGTHE 1448 (1466)
T ss_pred CCCEEEEEechHHH--HHhCCEEEEEeCCCCCCCEEEEecCHH
Confidence 58999999999844 6789999999862 674 4788754
No 287
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=59.11 E-value=15 Score=27.21 Aligned_cols=36 Identities=8% Similarity=-0.013 Sum_probs=30.6
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
|-||+. +.|=-...+++=|+..+|.. |++++.|+..
T Consensus 187 g~tIlL-VEQn~~~Al~iaDr~yvle~-Griv~~G~~~ 222 (237)
T COG0410 187 GMTILL-VEQNARFALEIADRGYVLEN-GRIVLSGTAA 222 (237)
T ss_pred CcEEEE-EeccHHHHHHhhCEEEEEeC-CEEEEecCHH
Confidence 335555 78999999999999999997 9999999865
No 288
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=57.83 E-value=10 Score=27.62 Aligned_cols=36 Identities=6% Similarity=-0.071 Sum_probs=26.7
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|.+. .+-.+.|++++|. |++++.|-.+
T Consensus 188 ~~~tIIiiSHd~~-~~~~~ad~i~~l~--~~~~~~~~~~ 223 (255)
T cd03236 188 DDNYVLVVEHDLA-VLDYLSDYIHCLY--GEPGAYGVVT 223 (255)
T ss_pred cCCEEEEEECCHH-HHHHhCCEEEEEC--CCCCcceeee
Confidence 3689999999874 5666899999995 5677655443
No 289
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=54.94 E-value=19 Score=29.34 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=25.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEE
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIY 36 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy 36 (98)
+|.+||+ |..==+|++.+-|||+||.. |+++-
T Consensus 450 ~G~ail~-iSSElpEll~~~DRIlVm~~-Gri~~ 481 (500)
T COG1129 450 EGKAILM-ISSELPELLGLSDRILVMRE-GRIVG 481 (500)
T ss_pred CCCEEEE-EeCChHHHHhhCCEEEEEEC-CEEEE
Confidence 4667766 55666899999999999997 88875
No 290
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.48 E-value=18 Score=32.69 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=31.2
Q ss_pred CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
-||||.|+--|+-|. .+--|+++++.+ |++|-.|...
T Consensus 536 ~~grTTivVaHRLSt--IrnaD~I~v~~~-G~IvE~G~h~ 572 (1228)
T KOG0055|consen 536 SKGRTTIVVAHRLST--IRNADKIAVMEE-GKIVEQGTHD 572 (1228)
T ss_pred hcCCeEEEEeeehhh--hhccCEEEEEEC-CEEEEecCHH
Confidence 379999999997665 445899999997 9999999865
No 291
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=51.90 E-value=29 Score=26.51 Aligned_cols=36 Identities=11% Similarity=0.097 Sum_probs=30.4
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||+..| ==.|.+.+=||+.+|.. |+++-++++.
T Consensus 186 ~kTivfVTH-DidEA~kLadri~vm~~-G~i~Q~~~P~ 221 (309)
T COG1125 186 GKTIVFVTH-DIDEALKLADRIAVMDA-GEIVQYDTPD 221 (309)
T ss_pred CCEEEEEec-CHHHHHhhhceEEEecC-CeEEEeCCHH
Confidence 578888766 46788999999999996 9999999865
No 292
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=51.63 E-value=15 Score=27.21 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=23.6
Q ss_pred EEEEecCCcHHHHh-hccceEeecCCCeEEEecCCC
Q 037141 7 SNTILSSSSCSRLF-NLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 7 vi~tIhQPs~~i~~-~FD~lllL~~gG~~vy~G~~~ 41 (98)
+|=++.--+.+.|. +++|+.++.. |+++|.|.++
T Consensus 186 ~vD~mdN~~~~~YgA~PeRlyIi~~-gkv~Y~Gg~G 220 (237)
T PF00837_consen 186 VVDTMDNNFNKAYGALPERLYIIQD-GKVVYKGGPG 220 (237)
T ss_pred EEEccCCHHHHHhCCCcceEEEEEC-CEEEEeCCCC
Confidence 33344444455554 5789999985 9999999765
No 293
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=50.97 E-value=23 Score=24.73 Aligned_cols=28 Identities=14% Similarity=0.067 Sum_probs=20.6
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGG 32 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG 32 (98)
+.|||+.-|.+. .+-..-|+++++..||
T Consensus 183 ~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 183 NRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred CCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 679999999874 3445567888888654
No 294
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=50.75 E-value=25 Score=28.37 Aligned_cols=35 Identities=9% Similarity=-0.026 Sum_probs=27.0
Q ss_pred ceEEEEecCCcHHHHhhccceEeecCCCeEE-EecCCC
Q 037141 5 NCSNTILSSSSCSRLFNLKDLMLMKRGGKII-YFRELG 41 (98)
Q Consensus 5 ~tvi~tIhQPs~~i~~~FD~lllL~~gG~~v-y~G~~~ 41 (98)
.|||++-|.+ ..+-...|++++|.. |+++ |.|+..
T Consensus 211 ~tviiisHd~-~~~~~~~d~i~~l~~-g~i~~~~g~~~ 246 (556)
T PRK11819 211 GTVVAVTHDR-YFLDNVAGWILELDR-GRGIPWEGNYS 246 (556)
T ss_pred CeEEEEeCCH-HHHHhhcCeEEEEeC-CEEEEecCCHH
Confidence 4888888876 456677899999997 7876 777643
No 295
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=50.73 E-value=42 Score=25.88 Aligned_cols=37 Identities=14% Similarity=-0.018 Sum_probs=28.8
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++-++|+--|-. .-+.++-|+|.||.. |++|-.|+..
T Consensus 203 ~~~aiilITHDl-~vva~~aDri~VMYa-G~iVE~g~~~ 239 (316)
T COG0444 203 KGTALILITHDL-GVVAEIADRVAVMYA-GRIVEEGPVE 239 (316)
T ss_pred cCCEEEEEeCCH-HHHHHhcceEEEEEC-cEEEEeCCHH
Confidence 356677655644 447889999999997 9999999864
No 296
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=50.72 E-value=28 Score=28.12 Aligned_cols=33 Identities=6% Similarity=0.034 Sum_probs=25.1
Q ss_pred eEEEEecCCcHHHHhhccceEeecCCCeEE-EecC
Q 037141 6 CSNTILSSSSCSRLFNLKDLMLMKRGGKII-YFRE 39 (98)
Q Consensus 6 tvi~tIhQPs~~i~~~FD~lllL~~gG~~v-y~G~ 39 (98)
|||++-|.+. .+....|++++|..||+++ |.|+
T Consensus 494 tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~ 527 (556)
T PRK11819 494 CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGN 527 (556)
T ss_pred eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCC
Confidence 7888888765 6777899999998657776 4553
No 297
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=50.53 E-value=22 Score=32.46 Aligned_cols=26 Identities=8% Similarity=0.107 Sum_probs=22.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKR 30 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~ 30 (98)
+++|+|+.-|.++. ...+|++++|.+
T Consensus 629 ~g~TvIiIsHrls~--i~~aD~Iivl~~ 654 (1466)
T PTZ00265 629 ENRITIIIAHRLST--IRYANTIFVLSN 654 (1466)
T ss_pred CCCEEEEEeCCHHH--HHhCCEEEEEeC
Confidence 48999999999964 478999999987
No 298
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=48.56 E-value=18 Score=25.78 Aligned_cols=34 Identities=3% Similarity=-0.195 Sum_probs=28.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRE 39 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~ 39 (98)
++.++|++-|. .++.++.|++..+.. |++.+.+.
T Consensus 142 ~~~~vlisTH~--~el~~~~~~~~~i~~-g~~~~~~~ 175 (222)
T cd03285 142 IKCFCLFATHF--HELTALADEVPNVKN-LHVTALTD 175 (222)
T ss_pred CCCeEEEEech--HHHHHHhhcCCCeEE-EEEEEEEe
Confidence 46899999995 888999999988886 89888764
No 299
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=48.38 E-value=27 Score=25.86 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=27.8
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||+.+|-=.-.- ..-|.++-|+. |+++..|++.
T Consensus 186 ~KtiviVlHDINfAS-~YsD~IVAlK~-G~vv~~G~~~ 221 (252)
T COG4604 186 GKTIVVVLHDINFAS-CYSDHIVALKN-GKVVKQGSPD 221 (252)
T ss_pred CCeEEEEEecccHHH-hhhhheeeecC-CEEEecCCHH
Confidence 689999999654321 13589999996 9999999976
No 300
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=48.33 E-value=26 Score=32.94 Aligned_cols=37 Identities=8% Similarity=-0.047 Sum_probs=30.8
Q ss_pred CCceEEEEecCCcHHHHhhccceEeec-----CCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMK-----RGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~-----~gG~~vy~G~~~ 41 (98)
+|.|||+.-|.+.. + ...|++++|. .||+++..|+++
T Consensus 861 ~G~TVIiIsHdl~~-i-~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 861 QGHTVVIIEHNMHV-V-KVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred cCCEEEEEeCCHHH-H-HhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 47899999999974 4 8999999995 258999999765
No 301
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=47.35 E-value=25 Score=28.26 Aligned_cols=34 Identities=6% Similarity=0.028 Sum_probs=25.5
Q ss_pred ceEEEEecCCcHHHHhhccceEeecCCCeEE-EecC
Q 037141 5 NCSNTILSSSSCSRLFNLKDLMLMKRGGKII-YFRE 39 (98)
Q Consensus 5 ~tvi~tIhQPs~~i~~~FD~lllL~~gG~~v-y~G~ 39 (98)
.|||++-|.+. .+-...|++++|..||+.+ |.|+
T Consensus 491 ~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~ 525 (552)
T TIGR03719 491 GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGN 525 (552)
T ss_pred CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCC
Confidence 38899889864 5667789999998656776 4443
No 302
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=47.14 E-value=27 Score=28.11 Aligned_cols=35 Identities=9% Similarity=-0.039 Sum_probs=26.8
Q ss_pred ceEEEEecCCcHHHHhhccceEeecCCCeEE-EecCCC
Q 037141 5 NCSNTILSSSSCSRLFNLKDLMLMKRGGKII-YFRELG 41 (98)
Q Consensus 5 ~tvi~tIhQPs~~i~~~FD~lllL~~gG~~v-y~G~~~ 41 (98)
.|||++-|.+. .+-...|++++|.. |+++ |.|+..
T Consensus 209 ~tvIiisHd~~-~~~~~~d~v~~l~~-g~i~~~~g~~~ 244 (552)
T TIGR03719 209 GTVVAVTHDRY-FLDNVAGWILELDR-GRGIPWEGNYS 244 (552)
T ss_pred CeEEEEeCCHH-HHHhhcCeEEEEEC-CEEEEecCCHH
Confidence 48888888764 56677899999997 8865 677654
No 303
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=46.88 E-value=18 Score=29.94 Aligned_cols=28 Identities=14% Similarity=-0.003 Sum_probs=23.0
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCe
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGK 33 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~ 33 (98)
++|||+.-|+++. ....|++++|..+|.
T Consensus 629 ~~tvI~isH~~~~--~~~~d~il~l~~~g~ 656 (659)
T TIGR00954 629 GITLFSVSHRKSL--WKYHEYLLYMDGRGG 656 (659)
T ss_pred CCEEEEEeCchHH--HHhCCEEEEEeCCCC
Confidence 7899999999885 577999999975454
No 304
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=46.83 E-value=31 Score=25.24 Aligned_cols=28 Identities=11% Similarity=0.089 Sum_probs=23.1
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCe
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGK 33 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~ 33 (98)
++.|||+..|-| ++-+..||++.+.. |+
T Consensus 192 ~g~tii~VTHd~--~lA~~~dr~i~l~d-G~ 219 (226)
T COG1136 192 RGKTIIMVTHDP--ELAKYADRVIELKD-GK 219 (226)
T ss_pred cCCEEEEEcCCH--HHHHhCCEEEEEeC-Ce
Confidence 478999999965 56668999999997 66
No 305
>PLN03073 ABC transporter F family; Provisional
Probab=46.03 E-value=29 Score=29.32 Aligned_cols=33 Identities=9% Similarity=0.126 Sum_probs=26.6
Q ss_pred ceEEEEecCCcHHHHhhccceEeecCCCeEE-EecC
Q 037141 5 NCSNTILSSSSCSRLFNLKDLMLMKRGGKII-YFRE 39 (98)
Q Consensus 5 ~tvi~tIhQPs~~i~~~FD~lllL~~gG~~v-y~G~ 39 (98)
.|||++-|.+. .+-...|++++|.. |+++ |.|+
T Consensus 675 gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 675 GGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred CEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 38999999876 46677899999996 8988 7775
No 306
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.76 E-value=17 Score=26.56 Aligned_cols=28 Identities=7% Similarity=-0.016 Sum_probs=23.0
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGG 32 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG 32 (98)
++.|+|++-|+|. +.+..|+++++..++
T Consensus 222 ~~~tii~isH~~~--~~~~~d~~~~l~~~~ 249 (276)
T cd03241 222 RSHQVLCITHLPQ--VAAMADNHFLVEKEV 249 (276)
T ss_pred CCCEEEEEechHH--HHHhcCcEEEEEEec
Confidence 4679999999986 568899999998753
No 307
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=42.33 E-value=36 Score=28.26 Aligned_cols=37 Identities=8% Similarity=0.088 Sum_probs=31.1
Q ss_pred CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.|++||++.-|++.. ....|+|++|.. |+.+-.|...
T Consensus 503 ~~~ktvl~itHrl~~--~~~~D~I~vld~-G~l~~~g~~~ 539 (559)
T COG4988 503 AKQKTVLVITHRLED--AADADRIVVLDN-GRLVEQGTHE 539 (559)
T ss_pred HhCCeEEEEEcChHH--HhcCCEEEEecC-CceeccCCHH
Confidence 478999999998754 566899999997 8999999754
No 308
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=41.79 E-value=39 Score=26.61 Aligned_cols=32 Identities=9% Similarity=-0.030 Sum_probs=23.5
Q ss_pred ceEEEEecCCcHHHHh-hccceEeecCCCeEEEec
Q 037141 5 NCSNTILSSSSCSRLF-NLKDLMLMKRGGKIIYFR 38 (98)
Q Consensus 5 ~tvi~tIhQPs~~i~~-~FD~lllL~~gG~~vy~G 38 (98)
.|||++-|.+.. +.+ ..|++++|.+ |+++..-
T Consensus 453 ~tviivsHd~~~-~~~~~~d~v~~l~~-G~i~~~~ 485 (490)
T PRK10938 453 TQLLFVSHHAED-APACITHRLEFVPD-GDIYRYV 485 (490)
T ss_pred cEEEEEecchhh-hhhhhheeEEEecC-CceEEee
Confidence 368998898644 344 4799999997 8877664
No 309
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=41.55 E-value=29 Score=24.34 Aligned_cols=25 Identities=0% Similarity=-0.100 Sum_probs=20.4
Q ss_pred CceEEEEecCCcHHHHhhccceEeecC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKR 30 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~ 30 (98)
+.|||++-|.+.. + ...|++++|.+
T Consensus 188 ~~tvii~sh~~~~-~-~~~d~i~~l~~ 212 (225)
T PRK10247 188 NIAVLWVTHDKDE-I-NHADKVITLQP 212 (225)
T ss_pred CCEEEEEECChHH-H-HhCCEEEEEec
Confidence 7899999999875 3 46999999953
No 310
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=41.04 E-value=38 Score=23.81 Aligned_cols=25 Identities=12% Similarity=-0.217 Sum_probs=19.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEeec
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMK 29 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~ 29 (98)
++.+||++-|. .++....|++++|.
T Consensus 210 ~~~~ii~~~h~--~~~~~~~d~i~~l~ 234 (243)
T cd03272 210 DGAQFITTTFR--PELLEVADKFYGVK 234 (243)
T ss_pred CCCEEEEEecC--HHHHhhCCEEEEEE
Confidence 45677777776 45789999999986
No 311
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=40.84 E-value=30 Score=26.86 Aligned_cols=33 Identities=18% Similarity=0.082 Sum_probs=26.8
Q ss_pred EEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 8 NTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 8 i~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
|+-..+--.|+..+-|+|++|.. |++.-+|+.+
T Consensus 182 IlYVSHS~~Ev~RLAd~vV~le~-GkV~A~g~~e 214 (352)
T COG4148 182 ILYVSHSLDEVLRLADRVVVLEN-GKVKASGPLE 214 (352)
T ss_pred EEEEecCHHHHHhhhheEEEecC-CeEEecCcHH
Confidence 33344667899999999999997 9999999743
No 312
>PHA02562 46 endonuclease subunit; Provisional
Probab=40.60 E-value=27 Score=27.84 Aligned_cols=28 Identities=14% Similarity=0.098 Sum_probs=22.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGG 32 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG 32 (98)
++.|||++-|+|. +...+|++++|.+.|
T Consensus 526 ~~~~iiiish~~~--~~~~~d~~~~l~~~~ 553 (562)
T PHA02562 526 KDTNVFVISHKDH--DPQKFDRHLKMEKVG 553 (562)
T ss_pred CCCeEEEEECchh--chhhhhcEEEEEEEC
Confidence 5789999999964 557899999998634
No 313
>PRK04296 thymidine kinase; Provisional
Probab=40.56 E-value=41 Score=23.20 Aligned_cols=37 Identities=8% Similarity=-0.246 Sum_probs=31.1
Q ss_pred CCceEEEEecC---------CcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSS---------SSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQ---------Ps~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.+||+|=+. ++.+++.+-|.|..|.. .|..+|..+
T Consensus 105 ~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~--vC~~Cg~~a 150 (190)
T PRK04296 105 LGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKA--ICVHCGRKA 150 (190)
T ss_pred cCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeE--EccccCCcc
Confidence 57789999888 88999999999999974 788888543
No 314
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=39.93 E-value=34 Score=30.97 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=31.3
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.|||.|+--|+.|. .+--|.|.|+.. |+++..|...
T Consensus 1174 ~gRT~IvIAHRLST--IqnaD~I~Vi~~-G~VvE~GtH~ 1209 (1228)
T KOG0055|consen 1174 EGRTTIVIAHRLST--IQNADVIAVLKN-GKVVEQGTHD 1209 (1228)
T ss_pred cCCcEEEEecchhh--hhcCCEEEEEEC-CEEEecccHH
Confidence 58999999998875 677899999996 9999999865
No 315
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=39.69 E-value=19 Score=26.25 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=31.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQ 42 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~ 42 (98)
.|++||++=|--.. .+..-|++.+|++ |+.+-.|..++
T Consensus 181 ~G~~vims~HDLNh-TLrhA~~~wLL~r-G~l~~~G~~~e 218 (248)
T COG4138 181 QGLAIVMSSHDLNH-TLRHAHRAWLLKR-GKLLASGRREE 218 (248)
T ss_pred CCcEEEEeccchhh-HHHHHHHHHHHhc-CeEEeecchhh
Confidence 58899999887665 4566899999999 89999998763
No 316
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=38.33 E-value=15 Score=27.40 Aligned_cols=36 Identities=8% Similarity=-0.094 Sum_probs=28.9
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.||++.-| ==.-++++-|+|.||.. |+.+.-|+++
T Consensus 200 g~tillIEH-dM~~Vm~l~dri~Vl~~-G~~IAeG~P~ 235 (250)
T COG0411 200 GVTILLIEH-DMKLVMGLADRIVVLNY-GEVIAEGTPE 235 (250)
T ss_pred CcEEEEEEe-ccHHHhhhccEEEeccC-CcCcccCCHH
Confidence 356666555 44568999999999998 8999999886
No 317
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=36.70 E-value=31 Score=23.53 Aligned_cols=67 Identities=9% Similarity=0.109 Sum_probs=45.8
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCChhHHHHhhhhCCCCCCCCCCCChhhhHHhh
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRKIKENYNPATWISQF 73 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~~~~~~yf~~i~G~~~~p~~~npad~~~dv 73 (98)
+..+.|||-=||+.....++|++ .+.|.+..|+|.-....-.+......-.|- -|=...++||..-+
T Consensus 40 ~~~pLVCt~G~p~~A~~~LL~~L--~~~g~~l~y~GDfDp~Gl~IA~~l~~r~~~--~~Wrm~~~dY~~~~ 106 (152)
T PF09664_consen 40 SCPPLVCTSGQPSAAARRLLDRL--AAAGARLYYSGDFDPEGLRIANRLIQRYGA--RPWRMDAEDYLAAL 106 (152)
T ss_pred CCCeEEEcCCcHHHHHHHHHHHH--HhCCCEEEEecCCCHHHHHHHHHHHHHhCC--ccccCCHHHHHHhc
Confidence 46789999999999999999999 455678889997764433333333321343 23567778885433
No 318
>PLN03073 ABC transporter F family; Provisional
Probab=36.42 E-value=63 Score=27.35 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=27.0
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEE-EecCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKII-YFREL 40 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~v-y~G~~ 40 (98)
+.|||++-|.. ..+-...|++++|.. |+++ |.|+.
T Consensus 391 ~~tviivsHd~-~~l~~~~d~i~~l~~-g~i~~~~g~~ 426 (718)
T PLN03073 391 PKTFIVVSHAR-EFLNTVVTDILHLHG-QKLVTYKGDY 426 (718)
T ss_pred CCEEEEEECCH-HHHHHhCCEEEEEEC-CEEEEeCCCH
Confidence 46889988984 456777899999997 8886 66653
No 319
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.42 E-value=52 Score=28.14 Aligned_cols=36 Identities=8% Similarity=0.210 Sum_probs=29.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||++--|. -...+.=|+|.++.+ |+++--|..+
T Consensus 652 ~~rTVlvIAHR--LSTV~~Ad~Ivvi~~-G~V~E~G~h~ 687 (716)
T KOG0058|consen 652 QGRTVLVIAHR--LSTVRHADQIVVIDK-GRVVEMGTHD 687 (716)
T ss_pred cCCeEEEEehh--hhHhhhccEEEEEcC-CeEEecccHH
Confidence 67999998884 455778899999997 8999999654
No 320
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=36.00 E-value=69 Score=26.25 Aligned_cols=36 Identities=8% Similarity=0.024 Sum_probs=29.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFREL 40 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~ 40 (98)
+|.+||.--| ==.++|+.-|++.||.. |+.|-.++.
T Consensus 194 ~Gv~ii~ISH-rl~Ei~~i~DritVlRD-G~~v~~~~~ 229 (500)
T COG1129 194 QGVAIIYISH-RLDEVFEIADRITVLRD-GRVVGTRPT 229 (500)
T ss_pred CCCEEEEEcC-cHHHHHHhcCEEEEEeC-CEEeeeccc
Confidence 5677777444 67899999999999996 899998883
No 321
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=35.02 E-value=40 Score=25.28 Aligned_cols=34 Identities=9% Similarity=0.053 Sum_probs=26.9
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRE 39 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~ 39 (98)
+.++|+.-|++ .++-..|++++++++ |+.++.|.
T Consensus 223 ~~~ll~VtHh~-eEi~~~~th~lll~~-g~v~~~g~ 256 (257)
T COG1119 223 APALLFVTHHA-EEIPPCFTHRLLLKE-GEVVAQGK 256 (257)
T ss_pred CceEEEEEcch-hhcccccceEEEeeC-Cceeeccc
Confidence 45566666665 678889999999997 89999874
No 322
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=34.79 E-value=25 Score=26.20 Aligned_cols=36 Identities=11% Similarity=0.156 Sum_probs=27.6
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
|-.|+|.+|--... -.+-|+|++|.+ |+++-.|++.
T Consensus 191 g~~V~~VLHDLNLA-A~YaDrivll~~-Grv~a~g~p~ 226 (259)
T COG4559 191 GGAVLAVLHDLNLA-AQYADRIVLLHQ-GRVIASGSPQ 226 (259)
T ss_pred CCcEEEEEccchHH-HHhhheeeeeeC-CeEeecCCHH
Confidence 34567777766543 346799999997 9999999987
No 323
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=33.27 E-value=70 Score=25.27 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=29.4
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.+|||+- .+==.|.+.+=|++.+|+. |++|-.|.++
T Consensus 215 ~KTIvFi-tHDLdEAlriG~rIaimkd-G~ivQ~Gtp~ 250 (386)
T COG4175 215 KKTIVFI-THDLDEALRIGDRIAIMKD-GEIVQVGTPE 250 (386)
T ss_pred CCeEEEE-ecCHHHHHhccceEEEecC-CeEEEeCCHH
Confidence 3677774 4456788999999999985 9999999876
No 324
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=31.76 E-value=54 Score=23.06 Aligned_cols=26 Identities=12% Similarity=-0.081 Sum_probs=19.3
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKR 30 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~ 30 (98)
++.|+|+..|.+ ++....|+++++..
T Consensus 179 ~~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 179 KNAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred CCCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 345666666874 77889999999875
No 325
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=31.09 E-value=1.4e+02 Score=19.94 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=20.0
Q ss_pred ecCCcHHHHhhcc-----------ceEeecCCCeEEEec
Q 037141 11 LSSSSCSRLFNLK-----------DLMLMKRGGKIIYFR 38 (98)
Q Consensus 11 IhQPs~~i~~~FD-----------~lllL~~gG~~vy~G 38 (98)
+.-|..++.+.|. ..+|+.+.|+++|..
T Consensus 98 l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 98 LADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred EECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 3456777777665 367788779888876
No 326
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=31.08 E-value=69 Score=26.30 Aligned_cols=35 Identities=9% Similarity=0.112 Sum_probs=28.1
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRE 39 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~ 39 (98)
.|+|||. |-+-=.|+.+.-|++.||.+ |+++=.-+
T Consensus 189 ~G~tIi~-ITHKL~Ev~~iaDrvTVLR~-Gkvvgt~~ 223 (501)
T COG3845 189 EGKTIIF-ITHKLKEVMAIADRVTVLRR-GKVVGTVD 223 (501)
T ss_pred CCCEEEE-EeccHHHHHHhhCeeEEEeC-CeEEeeec
Confidence 4788888 45567899999999999997 88776554
No 327
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=30.66 E-value=64 Score=23.89 Aligned_cols=36 Identities=8% Similarity=-0.097 Sum_probs=29.8
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
|--|+.|-|.-+ |.++..||..++.. |+++..|.+.
T Consensus 189 giGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~ 224 (243)
T COG1137 189 GIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPE 224 (243)
T ss_pred CceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHH
Confidence 445777877654 67899999999998 8999999876
No 328
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=30.49 E-value=72 Score=26.26 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=25.4
Q ss_pred ceEEEEecCCcHHHHhhccceEeecCCCeEE-EecCC
Q 037141 5 NCSNTILSSSSCSRLFNLKDLMLMKRGGKII-YFREL 40 (98)
Q Consensus 5 ~tvi~tIhQPs~~i~~~FD~lllL~~gG~~v-y~G~~ 40 (98)
.|||++-|.+. .+-...|++++|.. |+++ |.|+.
T Consensus 204 ~tvlivsHd~~-~l~~~~d~i~~L~~-G~i~~~~g~~ 238 (635)
T PRK11147 204 GSIIFISHDRS-FIRNMATRIVDLDR-GKLVSYPGNY 238 (635)
T ss_pred CEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEecCCH
Confidence 47888777654 56778899999997 8887 55653
No 329
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=27.88 E-value=72 Score=21.40 Aligned_cols=30 Identities=13% Similarity=0.387 Sum_probs=21.4
Q ss_pred eecCCCeEEEecCCCCChhHHHHhhhhCCCC
Q 037141 27 LMKRGGKIIYFRELGQNSSKLIECFEGTSGV 57 (98)
Q Consensus 27 lL~~gG~~vy~G~~~~~~~~~~~yf~~i~G~ 57 (98)
+|++||+.++..+...+...+...++. .|+
T Consensus 129 ~Lk~gG~~~~~~~~~~~~~~~~~~l~~-~gf 158 (179)
T TIGR00537 129 ILKEGGRVQLIQSSLNGEPDTFDKLDE-RGF 158 (179)
T ss_pred hhCCCCEEEEEEeccCChHHHHHHHHh-CCC
Confidence 467889988876554434567888888 687
No 330
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=27.42 E-value=64 Score=22.06 Aligned_cols=25 Identities=16% Similarity=-0.067 Sum_probs=20.2
Q ss_pred CceEEEEecCCcHHHHhhccceEeecC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKR 30 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~ 30 (98)
++++|++-|.+. .....|+++.+.+
T Consensus 148 g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 148 TSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 578999999864 5578999998865
No 331
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=27.25 E-value=49 Score=25.54 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=21.3
Q ss_pred eEeecCCCeEEEecCCCCChhHHHHhhhhCCCCCC
Q 037141 25 LMLMKRGGKIIYFRELGQNSSKLIECFEGTSGVRK 59 (98)
Q Consensus 25 lllL~~gG~~vy~G~~~~~~~~~~~yf~~i~G~~~ 59 (98)
++||..||++-+|||..+ .-.-+.. +|+++
T Consensus 198 m~il~ngGkisafGp~SR----fg~ihd~-~G~~p 227 (320)
T COG4607 198 LVILVNGGKISAFGPSSR----FGWIHDD-LGFTP 227 (320)
T ss_pred EEEEecCCeeeeecCCCc----ceeeecc-cCCCc
Confidence 345666899999999773 4466677 58853
No 332
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=26.85 E-value=58 Score=26.50 Aligned_cols=26 Identities=0% Similarity=-0.084 Sum_probs=21.8
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKR 30 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~ 30 (98)
++++||+.-|.|. +....|+++++.+
T Consensus 492 ~~~~vi~iTH~~~--~~~~ad~~~~l~k 517 (563)
T TIGR00634 492 ERHQVLCVTHLPQ--VAAHADAHFKVEK 517 (563)
T ss_pred cCCEEEEEEChHH--HHHhcCeEEEEEE
Confidence 5789999999985 4468999999986
No 333
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=26.65 E-value=54 Score=22.56 Aligned_cols=17 Identities=18% Similarity=0.517 Sum_probs=10.5
Q ss_pred hccceEeecCCCeEEEe
Q 037141 21 NLKDLMLMKRGGKIIYF 37 (98)
Q Consensus 21 ~FD~lllL~~gG~~vy~ 37 (98)
|||.+.+..+.|+++|.
T Consensus 1 MfdQlaIFTpqGqvLyq 17 (148)
T PF09201_consen 1 MFDQLAIFTPQGQVLYQ 17 (148)
T ss_dssp ---EEEEE-TT-BEEEE
T ss_pred CcceeEEeccCceEEEE
Confidence 68999998888999994
No 334
>PRK13409 putative ATPase RIL; Provisional
Probab=26.22 E-value=79 Score=26.03 Aligned_cols=50 Identities=8% Similarity=0.009 Sum_probs=34.7
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCCCCh---hHHHHhhhhCCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELGQNS---SKLIECFEGTSGV 57 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~~~~---~~~~~yf~~i~G~ 57 (98)
+.|||+.-|.+. .+..+.|++++|. |+++..|...... ..+..|++. .|.
T Consensus 504 g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~~~~~~~~~~~~~~l~~-~~i 556 (590)
T PRK13409 504 EATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHASGPMDMREGMNRFLKE-LGI 556 (590)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEc--CcceeeeecCCchhHHHHHHHHHHH-cCC
Confidence 789999999865 4666789999995 5888777654211 123456777 365
No 335
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=25.71 E-value=1.1e+02 Score=25.37 Aligned_cols=34 Identities=6% Similarity=0.006 Sum_probs=25.2
Q ss_pred ceEEEEecCCcHHHHhhccceEeecCCCeEE-EecCC
Q 037141 5 NCSNTILSSSSCSRLFNLKDLMLMKRGGKII-YFREL 40 (98)
Q Consensus 5 ~tvi~tIhQPs~~i~~~FD~lllL~~gG~~v-y~G~~ 40 (98)
.|||++-|... .+-...|++++|.. |+++ |.|..
T Consensus 197 ~tviivsHd~~-~l~~~~d~i~~L~~-G~i~~~~g~~ 231 (638)
T PRK10636 197 GTLILISHDRD-FLDPIVDKIIHIEQ-QSLFEYTGNY 231 (638)
T ss_pred CeEEEEeCCHH-HHHHhcCEEEEEeC-CEEEEecCCH
Confidence 57888777654 56678899999997 7885 56643
No 336
>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=24.71 E-value=27 Score=14.32 Aligned_cols=10 Identities=20% Similarity=0.614 Sum_probs=5.2
Q ss_pred EeecCCCeEEE
Q 037141 26 MLMKRGGKIIY 36 (98)
Q Consensus 26 llL~~gG~~vy 36 (98)
+-+++ |+++|
T Consensus 4 L~~~~-GqP~Y 13 (13)
T PF04648_consen 4 LRLSP-GQPMY 13 (13)
T ss_pred eeccC-CCcCC
Confidence 33555 56554
No 337
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.07 E-value=52 Score=24.37 Aligned_cols=13 Identities=8% Similarity=-0.089 Sum_probs=11.4
Q ss_pred CCceEEEEecCCc
Q 037141 3 KTNCSNTILSSSS 15 (98)
Q Consensus 3 ~~~tvi~tIhQPs 15 (98)
+|++||+|.||-.
T Consensus 157 ~gKvIilTvhp~~ 169 (235)
T COG2874 157 LGKVIILTVHPSA 169 (235)
T ss_pred CCCEEEEEeChhh
Confidence 6899999999865
No 338
>PRK13695 putative NTPase; Provisional
Probab=23.88 E-value=87 Score=20.88 Aligned_cols=34 Identities=9% Similarity=-0.007 Sum_probs=25.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRE 39 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~ 39 (98)
.++++|+++|. ..+...-|++..+.. |+.+..-+
T Consensus 125 ~~~~~i~v~h~--~~~~~~~~~i~~~~~-~~i~~~~~ 158 (174)
T PRK13695 125 SEKPVIATLHR--RSVHPFVQEIKSRPG-GRVYELTP 158 (174)
T ss_pred CCCeEEEEECc--hhhHHHHHHHhccCC-cEEEEEcc
Confidence 47899999996 355567888888885 78777744
No 339
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=22.96 E-value=1.1e+02 Score=23.86 Aligned_cols=36 Identities=6% Similarity=-0.029 Sum_probs=29.0
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
|-||++--|+.- -+=...|++.+|.+ |++|-.|++.
T Consensus 192 glTIvlITHEm~-Vvk~ic~rVavm~~-G~lvE~G~v~ 227 (339)
T COG1135 192 GLTIVLITHEME-VVKRICDRVAVLDQ-GRLVEEGTVS 227 (339)
T ss_pred CCEEEEEechHH-HHHHHhhhheEeeC-CEEEEeccHH
Confidence 568888888864 35567899999997 9999999764
No 340
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=22.94 E-value=1.3e+02 Score=22.56 Aligned_cols=34 Identities=12% Similarity=0.046 Sum_probs=27.0
Q ss_pred eEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 6 CSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 6 tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
|.++ |-+=-.-+..+.||++||.+ |+.|-.++.+
T Consensus 194 t~l~-IsHdl~~v~~~cdRi~Vm~~-G~ivE~~~~~ 227 (252)
T COG1124 194 TYLF-ISHDLALVEHMCDRIAVMDN-GQIVEIGPTE 227 (252)
T ss_pred eEEE-EeCcHHHHHHHhhheeeeeC-CeEEEeechh
Confidence 5555 44455668889999999997 8999999876
No 341
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=22.80 E-value=42 Score=23.26 Aligned_cols=26 Identities=8% Similarity=0.070 Sum_probs=20.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKR 30 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~ 30 (98)
.|..|++|+|.++.. +.+||++.+..
T Consensus 98 ~G~~v~~t~Ha~~~~--~~~~Rl~~l~~ 123 (198)
T cd01131 98 TGHLVMSTLHTNSAA--KTIDRIIDVFP 123 (198)
T ss_pred cCCEEEEEecCCcHH--HHHhHHHhhcC
Confidence 467899999999863 67888877654
No 342
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=22.33 E-value=78 Score=26.71 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=29.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++||.|+.-|.-|.-+ --|.++++++ |++|..|..+
T Consensus 722 a~RTtIVvAHRLSTiv--nAD~ILvi~~-G~IvErG~He 757 (790)
T KOG0056|consen 722 ANRTTIVVAHRLSTIV--NADLILVISN-GRIVERGRHE 757 (790)
T ss_pred cCCceEEEeeeehhee--cccEEEEEeC-CeEeecCcHH
Confidence 6899999999877644 3689999997 9999999765
No 343
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=21.10 E-value=1.3e+02 Score=23.45 Aligned_cols=36 Identities=11% Similarity=-0.009 Sum_probs=28.7
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
|-|.|...| -..|.+.+=|+|.+|+. |++.-.|++.
T Consensus 187 giT~i~VTH-DqeEAl~msDrI~Vm~~-G~I~Q~gtP~ 222 (352)
T COG3842 187 GITFVYVTH-DQEEALAMSDRIAVMND-GRIEQVGTPE 222 (352)
T ss_pred CCeEEEEEC-CHHHHhhhccceEEccC-CceeecCCHH
Confidence 455565555 56788999999999997 8999999875
No 344
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=20.99 E-value=41 Score=25.13 Aligned_cols=34 Identities=21% Similarity=-0.014 Sum_probs=26.0
Q ss_pred ceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 5 NCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 5 ~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.++++|+|..+.. ...||+..|.. |+.+..|...
T Consensus 244 ~~~i~T~Ha~~~~--~~~~Rl~~l~~-~~~~~~g~~~ 277 (308)
T TIGR02788 244 PGSITTLHAGSPE--EAFEQLALMVK-SSQAGLGLDF 277 (308)
T ss_pred CeEEEEEeCCCHH--HHHHHHHHHhh-ccccccCCCH
Confidence 3579999999844 44899998886 7777777654
No 345
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=20.25 E-value=1.4e+02 Score=15.15 Aligned_cols=28 Identities=11% Similarity=0.230 Sum_probs=19.8
Q ss_pred hHHHHhhhhCCCCCCCCCCCChhhhHHhhc
Q 037141 45 SKLIECFEGTSGVRKIKENYNPATWISQFT 74 (98)
Q Consensus 45 ~~~~~yf~~i~G~~~~p~~~npad~~~dv~ 74 (98)
+++..|+++ .|.+ .+......|-+++.+
T Consensus 7 ~~L~~wL~~-~gi~-~~~~~~~rd~Ll~~~ 34 (38)
T PF10281_consen 7 SDLKSWLKS-HGIP-VPKSAKTRDELLKLA 34 (38)
T ss_pred HHHHHHHHH-cCCC-CCCCCCCHHHHHHHH
Confidence 479999999 7994 665555667666653
No 346
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=20.24 E-value=77 Score=21.87 Aligned_cols=15 Identities=13% Similarity=-0.086 Sum_probs=10.4
Q ss_pred CCCCceEEE-EecCCc
Q 037141 1 MIKTNCSNT-ILSSSS 15 (98)
Q Consensus 1 ~~~~~tvi~-tIhQPs 15 (98)
||+||+|.+ .++||=
T Consensus 33 ~INGRPI~l~~L~qPl 48 (149)
T cd07268 33 EINGRPIALIKLEKPL 48 (149)
T ss_pred ccCCeeEEEEEcCCCc
Confidence 789998864 455653
No 347
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=20.22 E-value=72 Score=26.12 Aligned_cols=24 Identities=17% Similarity=0.128 Sum_probs=19.6
Q ss_pred HHHhhccceEeecCCCeEEEecCCC
Q 037141 17 SRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 17 ~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
-+=.+.|+|+||.. |++|-.|+.+
T Consensus 489 VvrAl~~~viVm~~-GkiVE~G~~~ 512 (534)
T COG4172 489 VVRALCHRVIVMRD-GKIVEQGPTE 512 (534)
T ss_pred HHHHhhceEEEEeC-CEEeeeCCHH
Confidence 34567899999997 9999999753
No 348
>KOG0186 consensus Proline oxidase [Amino acid transport and metabolism]
Probab=20.18 E-value=59 Score=26.65 Aligned_cols=34 Identities=9% Similarity=0.174 Sum_probs=27.6
Q ss_pred HHHHhhccceEe-ecCCCeEEE----ecCCCCChhHHHHhhhh
Q 037141 16 CSRLFNLKDLML-MKRGGKIIY----FRELGQNSSKLIECFEG 53 (98)
Q Consensus 16 ~~i~~~FD~lll-L~~gG~~vy----~G~~~~~~~~~~~yf~~ 53 (98)
..++.|.|+|-. |.++|..|| +||+. .+++|+-.
T Consensus 436 gQLlGM~D~vSf~L~qagf~V~KYvPyGPv~----EvlPYL~R 474 (506)
T KOG0186|consen 436 GQLLGMCDQVSFALGQAGFNVYKYVPYGPVE----EVLPYLLR 474 (506)
T ss_pred HHhhcchhhhchhhccCCceeEEeecCCCHH----HHHHHHHH
Confidence 467888888876 777899998 78887 68999876
Done!