Query 037141
Match_columns 98
No_of_seqs 110 out of 1120
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 15:15:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pcj_A ABC transporter, lipopr 93.7 0.05 1.7E-06 37.7 3.2 34 3-39 189-222 (224)
2 3tif_A Uncharacterized ABC tra 92.6 0.093 3.2E-06 36.6 3.3 35 4-41 196-230 (235)
3 3qf4_B Uncharacterized ABC tra 92.4 0.11 3.8E-06 40.9 3.8 36 3-41 539-574 (598)
4 2ff7_A Alpha-hemolysin translo 92.3 0.11 3.7E-06 36.6 3.4 36 3-41 193-228 (247)
5 2cbz_A Multidrug resistance-as 92.2 0.15 5.2E-06 35.6 4.0 36 3-41 178-213 (237)
6 1ji0_A ABC transporter; ATP bi 92.1 0.14 4.7E-06 35.8 3.6 37 3-41 188-224 (240)
7 3nh6_A ATP-binding cassette SU 92.0 0.12 4E-06 37.9 3.3 36 3-41 238-273 (306)
8 3qf4_A ABC transporter, ATP-bi 91.7 0.11 3.9E-06 40.8 3.1 36 3-41 527-562 (587)
9 1b0u_A Histidine permease; ABC 91.6 0.18 6.2E-06 35.7 3.9 37 3-41 202-238 (262)
10 1g6h_A High-affinity branched- 91.6 0.12 4.1E-06 36.5 2.9 37 3-41 202-238 (257)
11 2pze_A Cystic fibrosis transme 91.5 0.27 9.3E-06 34.0 4.7 36 3-41 179-214 (229)
12 1mv5_A LMRA, multidrug resista 91.4 0.12 3.9E-06 36.2 2.7 36 3-41 187-222 (243)
13 3b5x_A Lipid A export ATP-bind 91.3 0.18 6.1E-06 39.5 3.8 36 3-41 528-563 (582)
14 1vpl_A ABC transporter, ATP-bi 91.2 0.16 5.4E-06 36.1 3.2 37 3-41 195-231 (256)
15 2bbs_A Cystic fibrosis transme 91.1 0.23 7.9E-06 35.9 4.0 36 3-41 208-243 (290)
16 2onk_A Molybdate/tungstate ABC 91.0 0.23 7.9E-06 34.8 3.9 36 4-41 177-212 (240)
17 2yl4_A ATP-binding cassette SU 90.9 0.21 7.1E-06 39.2 3.9 36 3-41 531-566 (595)
18 2d2e_A SUFC protein; ABC-ATPas 90.9 0.2 7E-06 35.1 3.5 37 3-41 192-229 (250)
19 2zu0_C Probable ATP-dependent 90.8 0.19 6.5E-06 35.7 3.3 37 3-41 213-250 (267)
20 2qi9_C Vitamin B12 import ATP- 90.8 0.21 7.1E-06 35.3 3.5 37 3-41 182-218 (249)
21 4f4c_A Multidrug resistance pr 90.8 0.16 5.4E-06 43.7 3.3 37 2-41 1264-1300(1321)
22 4a82_A Cystic fibrosis transme 90.7 0.16 5.6E-06 39.7 3.2 36 3-41 525-560 (578)
23 2ixe_A Antigen peptide transpo 90.7 0.21 7.3E-06 35.6 3.5 35 4-41 207-241 (271)
24 3gfo_A Cobalt import ATP-bindi 90.7 0.21 7.2E-06 35.9 3.5 36 4-41 194-229 (275)
25 2ghi_A Transport protein; mult 90.7 0.23 7.9E-06 35.1 3.6 36 3-41 203-238 (260)
26 2olj_A Amino acid ABC transpor 90.6 0.29 1E-05 34.8 4.2 37 3-41 208-244 (263)
27 3tui_C Methionine import ATP-b 90.6 0.28 9.6E-06 36.9 4.2 36 4-41 214-249 (366)
28 4g1u_C Hemin import ATP-bindin 90.6 0.27 9.2E-06 35.0 4.0 36 4-41 198-233 (266)
29 3fvq_A Fe(3+) IONS import ATP- 90.3 0.27 9.2E-06 36.9 3.8 37 3-41 188-224 (359)
30 3b60_A Lipid A export ATP-bind 90.2 0.2 6.9E-06 39.2 3.3 36 3-41 528-563 (582)
31 3gd7_A Fusion complex of cysti 90.1 0.24 8.1E-06 37.5 3.5 36 3-41 203-238 (390)
32 4f4c_A Multidrug resistance pr 89.9 0.21 7.1E-06 43.0 3.3 37 2-41 601-637 (1321)
33 2yz2_A Putative ABC transporte 89.3 0.29 9.8E-06 34.7 3.2 37 3-41 187-223 (266)
34 2nq2_C Hypothetical ABC transp 88.7 0.42 1.4E-05 33.7 3.7 35 4-41 179-213 (253)
35 1oxx_K GLCV, glucose, ABC tran 88.6 0.49 1.7E-05 35.2 4.2 36 4-41 191-226 (353)
36 3d31_A Sulfate/molybdate ABC t 88.6 0.5 1.7E-05 35.1 4.2 36 4-41 178-213 (348)
37 1g29_1 MALK, maltose transport 88.5 0.49 1.7E-05 35.4 4.2 36 4-41 190-225 (372)
38 2it1_A 362AA long hypothetical 88.0 0.55 1.9E-05 35.1 4.2 36 4-41 184-219 (362)
39 2yyz_A Sugar ABC transporter, 87.7 0.6 2E-05 34.9 4.2 36 4-41 184-219 (359)
40 1z47_A CYSA, putative ABC-tran 86.6 0.71 2.4E-05 34.4 4.1 36 4-41 196-231 (355)
41 1v43_A Sugar-binding transport 86.5 0.75 2.6E-05 34.5 4.2 36 4-41 192-227 (372)
42 2ihy_A ABC transporter, ATP-bi 86.0 0.27 9.2E-06 35.3 1.4 36 4-41 211-248 (279)
43 3rlf_A Maltose/maltodextrin im 85.6 0.86 3E-05 34.4 4.1 36 4-41 184-219 (381)
44 3ux8_A Excinuclease ABC, A sub 84.0 0.87 3E-05 36.1 3.6 36 3-41 595-636 (670)
45 3g5u_A MCG1178, multidrug resi 81.9 0.9 3.1E-05 39.0 3.1 36 3-41 1219-1254(1284)
46 4aby_A DNA repair protein RECN 81.7 1.2 4.1E-05 32.6 3.4 33 3-38 345-381 (415)
47 3qf7_A RAD50; ABC-ATPase, ATPa 81.0 0.98 3.4E-05 33.3 2.7 31 3-36 334-364 (365)
48 2pjz_A Hypothetical protein ST 80.1 1.2 3.9E-05 31.7 2.8 34 6-41 177-211 (263)
49 3pih_A Uvrabc system protein A 78.9 1.5 5.2E-05 36.7 3.5 36 3-41 857-898 (916)
50 2r6f_A Excinuclease ABC subuni 77.6 2.1 7.1E-05 36.2 3.9 38 3-42 555-597 (972)
51 1f2t_B RAD50 ABC-ATPase; DNA d 76.1 2.4 8.1E-05 27.5 3.2 25 3-29 112-136 (148)
52 3ux8_A Excinuclease ABC, A sub 75.9 2.1 7.3E-05 33.9 3.4 36 3-41 253-294 (670)
53 3g5u_A MCG1178, multidrug resi 75.5 1.1 3.6E-05 38.6 1.7 36 3-41 574-609 (1284)
54 2vf7_A UVRA2, excinuclease ABC 71.9 2.9 9.9E-05 34.7 3.3 37 3-41 430-471 (842)
55 3pih_A Uvrabc system protein A 70.9 4.3 0.00015 34.0 4.2 36 3-41 515-556 (916)
56 2ygr_A Uvrabc system protein A 62.1 4.4 0.00015 34.3 2.6 37 3-41 572-613 (993)
57 2iw3_A Elongation factor 3A; a 59.0 12 0.00042 31.6 4.7 37 3-41 594-631 (986)
58 3j16_B RLI1P; ribosome recycli 56.5 7.2 0.00025 31.0 2.8 38 4-42 518-556 (608)
59 2ygr_A Uvrabc system protein A 56.0 14 0.00049 31.3 4.7 37 3-41 915-956 (993)
60 2r6f_A Excinuclease ABC subuni 54.1 14 0.00047 31.3 4.3 37 3-41 897-938 (972)
61 2vf7_A UVRA2, excinuclease ABC 52.5 10 0.00035 31.5 3.2 37 3-41 782-823 (842)
62 2o5v_A DNA replication and rep 49.0 16 0.00054 27.0 3.5 31 5-41 322-352 (359)
63 2ehv_A Hypothetical protein PH 47.2 13 0.00044 24.6 2.6 27 3-29 171-206 (251)
64 3bk7_A ABC transporter ATP-bin 45.7 18 0.00062 28.6 3.6 39 3-42 521-560 (607)
65 2npi_A Protein CLP1; CLP1-PCF1 45.3 11 0.00038 28.8 2.2 37 4-41 288-334 (460)
66 1e69_A Chromosome segregation 45.2 27 0.00093 24.7 4.2 37 3-41 271-309 (322)
67 2pt7_A CAG-ALFA; ATPase, prote 43.6 3.5 0.00012 30.0 -0.8 24 5-30 266-289 (330)
68 1cr0_A DNA primase/helicase; R 38.3 19 0.00065 24.9 2.4 29 4-33 187-236 (296)
69 3jvv_A Twitching mobility prot 35.7 8.6 0.0003 28.3 0.3 26 3-30 220-245 (356)
70 1yqt_A RNAse L inhibitor; ATP- 35.0 36 0.0012 26.3 3.7 37 4-41 452-489 (538)
71 3auy_A DNA double-strand break 34.9 22 0.00075 25.8 2.4 27 4-32 336-362 (371)
72 2w0m_A SSO2452; RECA, SSPF, un 34.6 22 0.00075 23.0 2.1 27 4-30 158-191 (235)
73 4ad8_A DNA repair protein RECN 34.1 19 0.00064 27.5 1.9 25 4-30 448-472 (517)
74 1nrj_A Signal recognition part 32.4 26 0.00088 23.3 2.1 17 21-37 1-17 (158)
75 3qkt_A DNA double-strand break 32.3 24 0.00082 25.2 2.2 25 3-29 303-327 (339)
76 2eyu_A Twitching motility prot 29.0 16 0.00056 25.4 0.8 26 3-30 122-147 (261)
77 1znw_A Guanylate kinase, GMP k 26.8 14 0.00047 24.3 0.0 29 4-33 178-206 (207)
78 2iw3_A Elongation factor 3A; a 25.7 19 0.00065 30.5 0.7 34 4-39 948-981 (986)
79 1tf7_A KAIC; homohexamer, hexa 23.4 23 0.00079 27.0 0.7 30 3-33 406-444 (525)
No 1
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.71 E-value=0.05 Score=37.72 Aligned_cols=34 Identities=12% Similarity=-0.026 Sum_probs=29.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRE 39 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~ 39 (98)
++.|||++-|.+.. + ...|++++|.. |++++.|+
T Consensus 189 ~g~tvi~vtHd~~~-~-~~~d~v~~l~~-G~i~~~g~ 222 (224)
T 2pcj_A 189 GGTSIVMVTHEREL-A-ELTHRTLEMKD-GKVVGEIT 222 (224)
T ss_dssp TTCEEEEECSCHHH-H-TTSSEEEEEET-TEEEEEEE
T ss_pred CCCEEEEEcCCHHH-H-HhCCEEEEEEC-CEEEEEee
Confidence 37899999999754 4 88999999997 89999886
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.60 E-value=0.093 Score=36.61 Aligned_cols=35 Identities=9% Similarity=0.024 Sum_probs=30.8
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++.|.+. +..+.|++++|.. |+++..|+..
T Consensus 196 g~tvi~vtHd~~--~~~~~d~i~~l~~-G~i~~~~~~~ 230 (235)
T 3tif_A 196 GKTVVVVTHDIN--VARFGERIIYLKD-GEVEREEKLR 230 (235)
T ss_dssp CCEEEEECSCHH--HHTTSSEEEEEET-TEEEEEEECC
T ss_pred CCEEEEEcCCHH--HHHhCCEEEEEEC-CEEEEEcChh
Confidence 789999999986 4589999999997 8999998765
No 3
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.40 E-value=0.11 Score=40.89 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=31.3
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|+|+.-|.++. ....|++++|.+ |+++..|+..
T Consensus 539 ~~~t~i~itH~l~~--~~~~d~i~~l~~-G~i~~~g~~~ 574 (598)
T 3qf4_B 539 EGKTSIIIAHRLNT--IKNADLIIVLRD-GEIVEMGKHD 574 (598)
T ss_dssp TTSEEEEESCCTTH--HHHCSEEEEECS-SSEEECSCHH
T ss_pred CCCEEEEEecCHHH--HHcCCEEEEEEC-CEEEEECCHH
Confidence 68999999999985 355999999997 8999999865
No 4
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.31 E-value=0.11 Score=36.57 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=30.0
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|.+..- ...|++++|.. |+++..|+..
T Consensus 193 ~g~tviivtH~~~~~--~~~d~v~~l~~-G~i~~~g~~~ 228 (247)
T 2ff7_A 193 KGRTVIIIAHRLSTV--KNADRIIVMEK-GKIVEQGKHK 228 (247)
T ss_dssp TTSEEEEECSSGGGG--TTSSEEEEEET-TEEEEEECHH
T ss_pred CCCEEEEEeCCHHHH--HhCCEEEEEEC-CEEEEECCHH
Confidence 478999999998743 45999999997 8999998753
No 5
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.19 E-value=0.15 Score=35.57 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=30.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|.+.. + ...|++++|.. |+++..|+..
T Consensus 178 ~~~tviivtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~~ 213 (237)
T 2cbz_A 178 KNKTRILVTHSMSY-L-PQVDVIIVMSG-GKISEMGSYQ 213 (237)
T ss_dssp TTSEEEEECSCSTT-G-GGSSEEEEEET-TEEEEEECHH
T ss_pred CCCEEEEEecChHH-H-HhCCEEEEEeC-CEEEEeCCHH
Confidence 47899999999875 3 56999999997 8999998754
No 6
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.06 E-value=0.14 Score=35.79 Aligned_cols=37 Identities=8% Similarity=0.011 Sum_probs=30.8
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|.+. .+..+.|++++|.. |+++..|+..
T Consensus 188 ~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 224 (240)
T 1ji0_A 188 EGTTILLVEQNAL-GALKVAHYGYVLET-GQIVLEGKAS 224 (240)
T ss_dssp TTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEEHH
T ss_pred CCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 4789999999874 46678999999997 8999998654
No 7
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.00 E-value=0.12 Score=37.88 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=30.5
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||+.-|.++.- ...|++++|.. |+++..|+..
T Consensus 238 ~~~Tvi~itH~l~~~--~~aD~i~vl~~-G~iv~~G~~~ 273 (306)
T 3nh6_A 238 ANRTTIVVAHRLSTV--VNADQILVIKD-GCIVERGRHE 273 (306)
T ss_dssp TTSEEEEECCSHHHH--HTCSEEEEEET-TEEEEEECHH
T ss_pred CCCEEEEEEcChHHH--HcCCEEEEEEC-CEEEEECCHH
Confidence 578999999988753 34999999997 9999999865
No 8
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.69 E-value=0.11 Score=40.80 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=31.7
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|+|+.-|.++. ....|++++|.+ |+++..|+..
T Consensus 527 ~~~tvi~itH~l~~--~~~~d~i~vl~~-G~i~~~g~~~ 562 (587)
T 3qf4_A 527 KGCTTFIITQKIPT--ALLADKILVLHE-GKVAGFGTHK 562 (587)
T ss_dssp TTCEEEEEESCHHH--HTTSSEEEEEET-TEEEEEECHH
T ss_pred CCCEEEEEecChHH--HHhCCEEEEEEC-CEEEEECCHH
Confidence 68999999999875 457999999997 9999999865
No 9
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.64 E-value=0.18 Score=35.72 Aligned_cols=37 Identities=8% Similarity=0.024 Sum_probs=30.7
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++.|.+. .+..+.|++++|.. |+++..|++.
T Consensus 202 ~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 238 (262)
T 1b0u_A 202 EGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDPE 238 (262)
T ss_dssp TTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 3789999999864 56678999999997 8999998743
No 10
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.61 E-value=0.12 Score=36.47 Aligned_cols=37 Identities=22% Similarity=0.021 Sum_probs=31.3
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|.+. .+..+.|++++|.. |++++.|+..
T Consensus 202 ~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 238 (257)
T 1g6h_A 202 KGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRGE 238 (257)
T ss_dssp TTCEEEEECSCCS-TTGGGCSEEEEEET-TEEEEEEESH
T ss_pred CCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEeCHH
Confidence 3789999999985 45678999999997 8999999765
No 11
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.52 E-value=0.27 Score=34.00 Aligned_cols=36 Identities=6% Similarity=0.194 Sum_probs=29.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++.|.+.. + ...|++++|.. |+++..|+..
T Consensus 179 ~~~tvi~vtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~~ 214 (229)
T 2pze_A 179 ANKTRILVTSKMEH-L-KKADKILILHE-GSSYFYGTFS 214 (229)
T ss_dssp TTSEEEEECCCHHH-H-HHCSEEEEEET-TEEEEEECHH
T ss_pred CCCEEEEEcCChHH-H-HhCCEEEEEEC-CEEEEECCHH
Confidence 47899999999754 3 46999999997 8999998753
No 12
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.43 E-value=0.12 Score=36.21 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=29.7
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|.+.. + ...|++++|.. |+++..|+..
T Consensus 187 ~~~tvi~vtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~~ 222 (243)
T 1mv5_A 187 KGRTTLVIAHRLST-I-VDADKIYFIEK-GQITGSGKHN 222 (243)
T ss_dssp TTSEEEEECCSHHH-H-HHCSEEEEEET-TEECCCSCHH
T ss_pred CCCEEEEEeCChHH-H-HhCCEEEEEEC-CEEEEeCCHH
Confidence 47899999999763 3 56999999997 8999888754
No 13
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.26 E-value=0.18 Score=39.52 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=30.7
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||+.-|.++. ....|++++|.+ |+++..|+.+
T Consensus 528 ~~~tvi~itH~~~~--~~~~d~i~~l~~-G~i~~~g~~~ 563 (582)
T 3b5x_A 528 KNKTVLVIAHRLST--IEQADEILVVDE-GEIIERGRHA 563 (582)
T ss_pred CCCEEEEEecCHHH--HHhCCEEEEEEC-CEEEEECCHH
Confidence 58999999999864 357999999997 8999999754
No 14
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.21 E-value=0.16 Score=36.07 Aligned_cols=37 Identities=11% Similarity=0.016 Sum_probs=30.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|.+. .+..+.|++++|.. |++++.|+..
T Consensus 195 ~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 231 (256)
T 1vpl_A 195 EGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTVE 231 (256)
T ss_dssp TTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEHH
T ss_pred CCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecCHH
Confidence 4789999999874 45567999999997 8999998754
No 15
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.10 E-value=0.23 Score=35.90 Aligned_cols=36 Identities=8% Similarity=0.251 Sum_probs=30.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|.+.. ....|++++|.. |+++..|+..
T Consensus 208 ~~~tviivtHd~~~--~~~~d~i~~l~~-G~i~~~g~~~ 243 (290)
T 2bbs_A 208 ANKTRILVTSKMEH--LKKADKILILHE-GSSYFYGTFS 243 (290)
T ss_dssp TTSEEEEECCCHHH--HHHSSEEEEEET-TEEEEEECHH
T ss_pred CCCEEEEEecCHHH--HHcCCEEEEEEC-CeEEEeCCHH
Confidence 47899999999753 356999999997 8999999865
No 16
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.98 E-value=0.23 Score=34.80 Aligned_cols=36 Identities=11% Similarity=0.055 Sum_probs=30.2
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|.+. .+..+.|++++|.. |+++..|++.
T Consensus 177 g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 212 (240)
T 2onk_A 177 DVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKLK 212 (240)
T ss_dssp TCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 789999999874 46678999999997 8999998743
No 17
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=90.89 E-value=0.21 Score=39.22 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=31.0
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||+.-|.++. ....|++++|.+ |+++..|+..
T Consensus 531 ~~~tvi~itH~~~~--~~~~d~i~~l~~-G~i~~~g~~~ 566 (595)
T 2yl4_A 531 DGRTVLVIAHRLST--IKNANMVAVLDQ-GKITEYGKHE 566 (595)
T ss_dssp TTSEEEEECCCHHH--HHHSSEEEEEET-TEEEEEECSC
T ss_pred cCCEEEEEecCHHH--HHcCCEEEEEEC-CEEEEECCHH
Confidence 57899999999864 356999999997 8999999876
No 18
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.88 E-value=0.2 Score=35.11 Aligned_cols=37 Identities=8% Similarity=-0.004 Sum_probs=29.7
Q ss_pred CCceEEEEecCCcHHHHhh-ccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFN-LKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~-FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|.+.. +..+ .|++++|.. |+++..|+..
T Consensus 192 ~g~tvi~vtHd~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 229 (250)
T 2d2e_A 192 PNFGALVITHYQRI-LNYIQPDKVHVMMD-GRVVATGGPE 229 (250)
T ss_dssp TTCEEEEECSSSGG-GGTSCCSEEEEEET-TEEEEEESHH
T ss_pred cCCEEEEEecCHHH-HHHhcCCEEEEEEC-CEEEEEeCHH
Confidence 47899999999763 4444 499999997 8999999754
No 19
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.81 E-value=0.19 Score=35.72 Aligned_cols=37 Identities=5% Similarity=0.020 Sum_probs=30.2
Q ss_pred CCceEEEEecCCcHHHHhh-ccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFN-LKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~-FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|.+.. +..+ .|++++|.. |++++.|+..
T Consensus 213 ~g~tviivtHd~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 250 (267)
T 2zu0_C 213 GKRSFIIVTHYQRI-LDYIKPDYVHVLYQ-GRIVKSGDFT 250 (267)
T ss_dssp SSCEEEEECSSGGG-GGTSCCSEEEEEET-TEEEEEECTT
T ss_pred cCCEEEEEeeCHHH-HHhhcCCEEEEEEC-CEEEEEcCHH
Confidence 47899999999753 3343 699999997 8999999876
No 20
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.77 E-value=0.21 Score=35.29 Aligned_cols=37 Identities=14% Similarity=0.025 Sum_probs=30.8
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|.+. .+..+.|++++|.+ |+++..|+..
T Consensus 182 ~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 218 (249)
T 2qi9_C 182 QGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRRE 218 (249)
T ss_dssp TTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEHH
T ss_pred CCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 3789999999875 45678999999997 8999998754
No 21
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.76 E-value=0.16 Score=43.72 Aligned_cols=37 Identities=14% Similarity=0.086 Sum_probs=32.5
Q ss_pred CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.+++|||+--|..+. ...+|+|+||.+ |++|-+|++.
T Consensus 1264 ~~~~TvI~IAHRLsT--i~~aD~I~Vld~-G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1264 REGRTCIVIAHRLNT--VMNADCIAVVSN-GTIIEKGTHT 1300 (1321)
T ss_dssp SSSSEEEEECSSSST--TTTCSEEEEESS-SSEEEEECHH
T ss_pred cCCCEEEEeccCHHH--HHhCCEEEEEEC-CEEEEECCHH
Confidence 479999999998875 567999999997 9999999876
No 22
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=90.74 E-value=0.16 Score=39.73 Aligned_cols=36 Identities=11% Similarity=0.180 Sum_probs=31.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|+|+.-|.++. ....|++++|.+ |+++..|+.+
T Consensus 525 ~~~t~i~itH~l~~--~~~~d~i~~l~~-G~i~~~g~~~ 560 (578)
T 4a82_A 525 KDRTTLIVAHRLST--ITHADKIVVIEN-GHIVETGTHR 560 (578)
T ss_dssp TTSEEEEECSSGGG--TTTCSEEEEEET-TEEEEEECHH
T ss_pred CCCEEEEEecCHHH--HHcCCEEEEEEC-CEEEEECCHH
Confidence 67999999999986 356999999997 9999999865
No 23
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.69 E-value=0.21 Score=35.56 Aligned_cols=35 Identities=11% Similarity=0.028 Sum_probs=29.5
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|||++.|.+.. ....|++++|.. |+++..|+..
T Consensus 207 g~tviivtHd~~~--~~~~d~v~~l~~-G~i~~~g~~~ 241 (271)
T 2ixe_A 207 SRTVLLITQQLSL--AERAHHILFLKE-GSVCEQGTHL 241 (271)
T ss_dssp TSEEEEECSCHHH--HTTCSEEEEEET-TEEEEEECHH
T ss_pred CCEEEEEeCCHHH--HHhCCEEEEEEC-CEEEEECCHH
Confidence 7899999999764 345999999997 8999999754
No 24
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.66 E-value=0.21 Score=35.85 Aligned_cols=36 Identities=11% Similarity=0.068 Sum_probs=31.2
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
|.|||++.|.+.. +..+.|++++|.. |++++.|++.
T Consensus 194 g~tvi~vtHdl~~-~~~~~drv~~l~~-G~i~~~g~~~ 229 (275)
T 3gfo_A 194 GITIIIATHDIDI-VPLYCDNVFVMKE-GRVILQGNPK 229 (275)
T ss_dssp CCEEEEEESCCSS-GGGGCSEEEEEET-TEEEEEECHH
T ss_pred CCEEEEEecCHHH-HHHhCCEEEEEEC-CEEEEECCHH
Confidence 7899999999864 5578999999997 8999999865
No 25
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.66 E-value=0.23 Score=35.14 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=30.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|.+.. ....|++++|.. |+++..|+..
T Consensus 203 ~~~tviivtH~~~~--~~~~d~i~~l~~-G~i~~~g~~~ 238 (260)
T 2ghi_A 203 KNRTLIIIAHRLST--ISSAESIILLNK-GKIVEKGTHK 238 (260)
T ss_dssp TTSEEEEECSSGGG--STTCSEEEEEET-TEEEEEECHH
T ss_pred CCCEEEEEcCCHHH--HHhCCEEEEEEC-CEEEEECCHH
Confidence 57899999999875 356999999997 8999998754
No 26
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.65 E-value=0.29 Score=34.83 Aligned_cols=37 Identities=11% Similarity=-0.068 Sum_probs=30.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|.+. .+..+.|++++|.+ |+++..|+..
T Consensus 208 ~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 244 (263)
T 2olj_A 208 EGMTMVVVTHEMG-FAREVGDRVLFMDG-GYIIEEGKPE 244 (263)
T ss_dssp TTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 3789999999864 46678999999997 8999998743
No 27
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.57 E-value=0.28 Score=36.92 Aligned_cols=36 Identities=8% Similarity=-0.065 Sum_probs=31.3
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
|.|||++.|... .+..+.|++++|.. |+++..|++.
T Consensus 214 g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~iv~~g~~~ 249 (366)
T 3tui_C 214 GLTILLITHEMD-VVKRICDCVAVISN-GELIEQDTVS 249 (366)
T ss_dssp CCEEEEEESCHH-HHHHHCSEEEEEET-TEEEECCBHH
T ss_pred CCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 789999999874 57788999999997 9999999754
No 28
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.56 E-value=0.27 Score=34.97 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=30.1
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++.|... .+..+.|++++|.+ |++++.|++.
T Consensus 198 ~~tvi~vtHdl~-~~~~~~d~v~vl~~-G~i~~~g~~~ 233 (266)
T 4g1u_C 198 PLAVCCVLHDLN-LAALYADRIMLLAQ-GKLVACGTPE 233 (266)
T ss_dssp SEEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 469999999764 46678999999997 8999999865
No 29
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.25 E-value=0.27 Score=36.88 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=31.8
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.+.|||++.|... ++..+.|++++|.+ |+++..|++.
T Consensus 188 ~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~ 224 (359)
T 3fvq_A 188 NGKSAVFVSHDRE-EALQYADRIAVMKQ-GRILQTASPH 224 (359)
T ss_dssp TTCEEEEECCCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEEeCHH
Confidence 3789999999765 68889999999997 9999999764
No 30
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=90.20 E-value=0.2 Score=39.20 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=30.8
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||+.-|.++. ....|++++|.+ |+++..|+.+
T Consensus 528 ~~~tvi~itH~~~~--~~~~d~i~~l~~-G~i~~~g~~~ 563 (582)
T 3b60_A 528 KNRTSLVIAHRLST--IEQADEIVVVED-GIIVERGTHS 563 (582)
T ss_dssp TTSEEEEECSCGGG--TTTCSEEEEEET-TEEEEEECHH
T ss_pred CCCEEEEEeccHHH--HHhCCEEEEEEC-CEEEEecCHH
Confidence 58999999999975 357999999997 8999999754
No 31
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.12 E-value=0.24 Score=37.47 Aligned_cols=36 Identities=3% Similarity=0.088 Sum_probs=30.5
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++.|||++-|+. +...+.|++++|.. |+++..|++.
T Consensus 203 ~~~tvi~vtHd~--e~~~~aDri~vl~~-G~i~~~g~~~ 238 (390)
T 3gd7_A 203 ADCTVILCEARI--EAMLECDQFLVIEE-NKVRQYDSIL 238 (390)
T ss_dssp TTSCEEEECSSS--GGGTTCSEEEEEET-TEEEEESSHH
T ss_pred CCCEEEEEEcCH--HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 478999999996 45567999999997 9999999764
No 32
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.94 E-value=0.21 Score=43.01 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=32.7
Q ss_pred CCCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 2 IKTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 2 ~~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
.|+||+|+.-|+++ .....|+|++|.. |+++..|+..
T Consensus 601 ~~~~T~iiiaHrls--~i~~aD~Iivl~~-G~ive~Gth~ 637 (1321)
T 4f4c_A 601 AKGRTTIIIAHRLS--TIRNADLIISCKN-GQVVEVGDHR 637 (1321)
T ss_dssp HTTSEEEEECSCTT--TTTTCSEEEEEET-TEEEEEECHH
T ss_pred hCCCEEEEEcccHH--HHHhCCEEEEeeC-CeeeccCCHH
Confidence 37999999999998 4688999999997 9999999864
No 33
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.27 E-value=0.29 Score=34.69 Aligned_cols=37 Identities=8% Similarity=0.088 Sum_probs=30.5
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|||++-|.+.. +..+.|++++|.. |+++..|+..
T Consensus 187 ~g~tii~vtHd~~~-~~~~~d~v~~l~~-G~i~~~g~~~ 223 (266)
T 2yz2_A 187 LGKTVILISHDIET-VINHVDRVVVLEK-GKKVFDGTRM 223 (266)
T ss_dssp TTCEEEEECSCCTT-TGGGCSEEEEEET-TEEEEEEEHH
T ss_pred cCCEEEEEeCCHHH-HHHhCCEEEEEEC-CEEEEeCCHH
Confidence 37899999999864 5567899999997 8999998643
No 34
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=88.69 E-value=0.42 Score=33.68 Aligned_cols=35 Identities=9% Similarity=0.022 Sum_probs=29.1
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|.+.. +..+.|++++|.. |+ ++.|+..
T Consensus 179 g~tvi~vtHd~~~-~~~~~d~v~~l~~-G~-~~~g~~~ 213 (253)
T 2nq2_C 179 NMTVVFTTHQPNQ-VVAIANKTLLLNK-QN-FKFGETR 213 (253)
T ss_dssp CCEEEEEESCHHH-HHHHCSEEEEEET-TE-EEEEEHH
T ss_pred CCEEEEEecCHHH-HHHhCCEEEEEeC-Ce-EecCCHH
Confidence 7899999998743 5678999999997 89 9988754
No 35
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.63 E-value=0.49 Score=35.18 Aligned_cols=36 Identities=6% Similarity=0.025 Sum_probs=31.1
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++.|.+ .++..+.|++++|.+ |+++..|++.
T Consensus 191 g~tvi~vTHd~-~~~~~~adri~vl~~-G~i~~~g~~~ 226 (353)
T 1oxx_K 191 GVTLLVVSHDP-ADIFAIADRVGVLVK-GKLVQVGKPE 226 (353)
T ss_dssp CCEEEEEESCH-HHHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 78999999986 467889999999997 8999999764
No 36
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.61 E-value=0.5 Score=35.12 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=30.9
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|.. .++..+.|++++|.. |+++..|++.
T Consensus 178 g~tii~vTHd~-~~~~~~adri~vl~~-G~i~~~g~~~ 213 (348)
T 3d31_A 178 KLTVLHITHDQ-TEARIMADRIAVVMD-GKLIQVGKPE 213 (348)
T ss_dssp TCEEEEEESCH-HHHHHHCSEEEEESS-SCEEEEECHH
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEEC-CEEEEECCHH
Confidence 78999999986 467889999999997 8999999754
No 37
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=88.48 E-value=0.49 Score=35.42 Aligned_cols=36 Identities=8% Similarity=0.039 Sum_probs=31.2
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++.|.. .++..+.|++++|.. |+++..|++.
T Consensus 190 g~tvi~vTHd~-~~a~~~adri~vl~~-G~i~~~g~~~ 225 (372)
T 1g29_1 190 GVTTIYVTHDQ-VEAMTMGDRIAVMNR-GVLQQVGSPD 225 (372)
T ss_dssp TCEEEEEESCH-HHHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCEEEEECCCH-HHHHHhCCEEEEEeC-CEEEEeCCHH
Confidence 68999999986 467889999999997 8999999765
No 38
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=88.04 E-value=0.55 Score=35.11 Aligned_cols=36 Identities=8% Similarity=0.123 Sum_probs=31.1
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++-|.. .++..+.|++++|.. |+++..|++.
T Consensus 184 g~tvi~vTHd~-~~a~~~adri~vl~~-G~i~~~g~~~ 219 (362)
T 2it1_A 184 GITTVYVTHDQ-AEALAMADRIAVIRE-GEILQVGTPD 219 (362)
T ss_dssp TCEEEEEESCH-HHHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCEEEEECCCH-HHHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 68999999986 467889999999997 8999999764
No 39
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=87.74 E-value=0.6 Score=34.88 Aligned_cols=36 Identities=8% Similarity=0.157 Sum_probs=31.0
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++.|.. .++..+.|++++|.+ |+++..|++.
T Consensus 184 g~tvi~vTHd~-~~~~~~adri~vl~~-G~i~~~g~~~ 219 (359)
T 2yyz_A 184 GITSVYVTHDQ-AEAMTMASRIAVFNQ-GKLVQYGTPD 219 (359)
T ss_dssp CCEEEEEESCH-HHHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCEEEEEcCCH-HHHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 68999999986 457788999999997 8999999765
No 40
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=86.63 E-value=0.71 Score=34.42 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=30.9
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++.|.+ .++..+.|++++|.. |+++..|++.
T Consensus 196 g~tvi~vTHd~-~~a~~~adri~vl~~-G~i~~~g~~~ 231 (355)
T 1z47_A 196 GVTSVFVTHDQ-EEALEVADRVLVLHE-GNVEQFGTPE 231 (355)
T ss_dssp TCEEEEECSCH-HHHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCEEEEECCCH-HHHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 68999999986 457788999999997 8999999764
No 41
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=86.53 E-value=0.75 Score=34.48 Aligned_cols=36 Identities=8% Similarity=0.121 Sum_probs=31.0
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+.|||++.|.. .++..+.|++++|.. |+++..|++.
T Consensus 192 g~tvi~vTHd~-~~a~~~adri~vl~~-G~i~~~g~~~ 227 (372)
T 1v43_A 192 KVTTIYVTHDQ-VEAMTMGDRIAVMNR-GQLLQIGSPT 227 (372)
T ss_dssp TCEEEEEESCH-HHHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 67999999986 467789999999997 8999999765
No 42
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=85.98 E-value=0.27 Score=35.27 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=30.3
Q ss_pred CceE--EEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCS--NTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tv--i~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
++|| |++-|.+. .+..+.|++++|.. |++++.|+..
T Consensus 211 g~tv~~iivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 248 (279)
T 2ihy_A 211 YPTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGAVE 248 (279)
T ss_dssp CTTCEEEEEESCGG-GCCTTCCEEEEEET-TEEEEEEEHH
T ss_pred CCEEEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 6788 99999975 46678999999997 8999998754
No 43
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=85.61 E-value=0.86 Score=34.38 Aligned_cols=36 Identities=3% Similarity=0.042 Sum_probs=31.1
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
|.|||...|.. .++..+.|++++|.. |+++..|++.
T Consensus 184 g~tii~vTHd~-~ea~~~aDri~vl~~-G~i~~~g~~~ 219 (381)
T 3rlf_A 184 GRTMIYVTHDQ-VEAMTLADKIVVLDA-GRVAQVGKPL 219 (381)
T ss_dssp CCEEEEECSCH-HHHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCEEEEEECCH-HHHHHhCCEEEEEEC-CEEEEEeCHH
Confidence 78999988866 468889999999997 9999999865
No 44
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=84.00 E-value=0.87 Score=36.14 Aligned_cols=36 Identities=8% Similarity=0.066 Sum_probs=30.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEee------cCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLM------KRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL------~~gG~~vy~G~~~ 41 (98)
+|.|||+.-|.+. .....|++++| .. |++++.|++.
T Consensus 595 ~g~tvi~vtHd~~--~~~~~d~i~~l~~~~g~~~-G~i~~~g~~~ 636 (670)
T 3ux8_A 595 NGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRG-GQIVAVGTPE 636 (670)
T ss_dssp TTCEEEEECCCHH--HHTTCSEEEEEESSSGGGC-CEEEEEECHH
T ss_pred CCCEEEEEeCCHH--HHHhCCEEEEecCCcCCCC-CEEEEecCHH
Confidence 4789999999986 34779999999 65 9999999864
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=81.89 E-value=0.9 Score=39.01 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=31.3
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+|+|||+.-|.++. + ...|++++|.. |+++..|+..
T Consensus 1219 ~~~tvi~isH~l~~-i-~~~dri~vl~~-G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1219 EGRTCIVIAHRLST-I-QNADLIVVIQN-GKVKEHGTHQ 1254 (1284)
T ss_dssp SSSCEEEECSCTTG-G-GSCSEEEEEET-BEEEEEECHH
T ss_pred CCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCHH
Confidence 68999999999986 3 56999999997 9999999864
No 46
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=81.68 E-value=1.2 Score=32.64 Aligned_cols=33 Identities=6% Similarity=-0.018 Sum_probs=27.0
Q ss_pred CCceEEEEecCCcHHHHhhccceEee----cCCCeEEEec
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLM----KRGGKIIYFR 38 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL----~~gG~~vy~G 38 (98)
++.|||++-|.| ++....|++++| .. |+++-..
T Consensus 345 ~~~~vi~itH~~--~~~~~~d~i~~l~k~~~~-G~~~~~~ 381 (415)
T 4aby_A 345 DTRQVLVVTHLA--QIAARAHHHYKVEKQVED-GRTVSHV 381 (415)
T ss_dssp TTSEEEEECSCH--HHHTTCSEEEEEEEEEET-TEEEEEE
T ss_pred CCCEEEEEeCcH--HHHhhcCeEEEEEEeccC-CceEEEE
Confidence 578999999997 567899999999 75 7776543
No 47
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=81.01 E-value=0.98 Score=33.33 Aligned_cols=31 Identities=6% Similarity=0.012 Sum_probs=25.4
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEE
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIY 36 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy 36 (98)
+|.|||++-|.+.. ....|++++|.. |+++.
T Consensus 334 ~g~tvi~itH~~~~--~~~~d~~~~l~~-G~i~~ 364 (365)
T 3qf7_A 334 LNKVIVFITHDREF--SEAFDRKLRITG-GVVVN 364 (365)
T ss_dssp SSSEEEEEESCHHH--HTTCSCEEEEET-TEEC-
T ss_pred CCCEEEEEecchHH--HHhCCEEEEEEC-CEEEe
Confidence 47899999999854 678999999997 88753
No 48
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=80.11 E-value=1.2 Score=31.67 Aligned_cols=34 Identities=0% Similarity=-0.154 Sum_probs=28.5
Q ss_pred eEEEEecCCcHHHHhhcc-ceEeecCCCeEEEecCCC
Q 037141 6 CSNTILSSSSCSRLFNLK-DLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 6 tvi~tIhQPs~~i~~~FD-~lllL~~gG~~vy~G~~~ 41 (98)
|||++-|.+. .+..+.| ++++|.. |+++..|++.
T Consensus 177 tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~~~ 211 (263)
T 2pjz_A 177 EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPISVS 211 (263)
T ss_dssp EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEEHH
T ss_pred cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecCHH
Confidence 8999999984 4557889 9999997 8999999754
No 49
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=78.89 E-value=1.5 Score=36.66 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=30.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEee------cCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLM------KRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL------~~gG~~vy~G~~~ 41 (98)
+|.|||+.-|... +....|+|++| . ||++|..|+++
T Consensus 857 ~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~-~G~Iv~~Gtpe 898 (916)
T 3pih_A 857 RGNTVIVIEHNLD--VIKNADHIIDLGPEGGKE-GGYIVATGTPE 898 (916)
T ss_dssp TTCEEEEECCCHH--HHTTCSEEEEEESSSGGG-CCEEEEEESHH
T ss_pred cCCEEEEEeCCHH--HHHhCCEEEEecCCCCCC-CCEEEEEcCHH
Confidence 4889999999984 45679999999 5 59999999865
No 50
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=77.59 E-value=2.1 Score=36.21 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=31.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeec-----CCCeEEEecCCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMK-----RGGKIIYFRELGQ 42 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~-----~gG~~vy~G~~~~ 42 (98)
+|.|||+.-|.+ +.+...|+|++|. +||++++.|++.+
T Consensus 555 ~G~TVIvVeHdl--~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e 597 (972)
T 2r6f_A 555 LGNTLIVVEHDE--DTMLAADYLIDIGPGAGIHGGEVVAAGTPEE 597 (972)
T ss_dssp TTCEEEEECCCH--HHHHSCSEEEEECSSSGGGCCSEEEEECTTT
T ss_pred CCCEEEEEecCH--HHHHhCCEEEEeCCCccCCCCEEEEecCHHH
Confidence 588999999997 3467899999994 4699999998763
No 51
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=76.12 E-value=2.4 Score=27.49 Aligned_cols=25 Identities=4% Similarity=-0.114 Sum_probs=21.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEeec
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMK 29 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~ 29 (98)
+++|||++-|.+ ++....|++++|.
T Consensus 112 ~~~tiiivsH~~--~~~~~~d~ii~l~ 136 (148)
T 1f2t_B 112 KIPQVILVSHDE--ELKDAADHVIRIS 136 (148)
T ss_dssp GSSEEEEEESCG--GGGGGCSEEEEEE
T ss_pred cCCEEEEEEChH--HHHHhCCEEEEEE
Confidence 368999999998 5678899999994
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=75.85 E-value=2.1 Score=33.88 Aligned_cols=36 Identities=8% Similarity=0.069 Sum_probs=29.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEee------cCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLM------KRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL------~~gG~~vy~G~~~ 41 (98)
++.|||+.-|... .....|++++| .. |++++.|++.
T Consensus 253 ~g~tvi~vtHd~~--~~~~~d~ii~l~~g~~~~~-G~i~~~g~~~ 294 (670)
T 3ux8_A 253 LGNTLIVVEHDED--TMLAADYLIDIGPGAGIHG-GEVVAAGTPE 294 (670)
T ss_dssp TTCEEEEECCCHH--HHHHCSEEEEECSSSGGGC-CSEEEEECHH
T ss_pred cCCEEEEEeCCHH--HHhhCCEEEEecccccccC-CEEEEecCHH
Confidence 4789999999975 45669999999 54 8999999865
No 53
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=75.52 E-value=1.1 Score=38.55 Aligned_cols=36 Identities=14% Similarity=0.030 Sum_probs=30.8
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+++|+|+.-|..+. ....|++++|.. |+++..|+..
T Consensus 574 ~~~t~i~itH~l~~--i~~~d~i~vl~~-G~i~~~g~~~ 609 (1284)
T 3g5u_A 574 EGRTTIVIAHRLST--VRNADVIAGFDG-GVIVEQGNHD 609 (1284)
T ss_dssp TTSEEEEECSCHHH--HTTCSEEEECSS-SCCCCEECHH
T ss_pred CCCEEEEEecCHHH--HHcCCEEEEEEC-CEEEEECCHH
Confidence 68999999998874 356999999997 8999999865
No 54
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=71.88 E-value=2.9 Score=34.68 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=31.5
Q ss_pred CCceEEEEecCCcHHHHhhccceEeec-----CCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMK-----RGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~-----~gG~~vy~G~~~ 41 (98)
+|.|||+.-|... ++...|+|++|. +||+.+|.|++.
T Consensus 430 ~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~ 471 (842)
T 2vf7_A 430 GGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPE 471 (842)
T ss_dssp TTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGG
T ss_pred cCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHH
Confidence 4789999999884 678899999994 469999999876
No 55
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=70.91 E-value=4.3 Score=33.98 Aligned_cols=36 Identities=11% Similarity=0.265 Sum_probs=30.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEee------cCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLM------KRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL------~~gG~~vy~G~~~ 41 (98)
+|.|||+.-|.+ ++....|++++| . ||++++.|++.
T Consensus 515 ~G~TvivVtHd~--~~~~~aD~ii~lgpgag~~-~G~iv~~G~~~ 556 (916)
T 3pih_A 515 LGNTVIVVEHDE--EVIRNADHIIDIGPGGGTN-GGRVVFQGTVD 556 (916)
T ss_dssp TTCEEEEECCCH--HHHHTCSEEEEEESSSGGG-CSEEEEEECHH
T ss_pred cCCEEEEEeCCH--HHHHhCCEEEEEcCCcccC-CCEEEEeechh
Confidence 478999999986 455669999999 5 59999999865
No 56
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=62.07 E-value=4.4 Score=34.32 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=30.9
Q ss_pred CCceEEEEecCCcHHHHhhccceEeec-----CCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMK-----RGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~-----~gG~~vy~G~~~ 41 (98)
+|.|||+.-|... .+...|+|++|. +||+++|.|++.
T Consensus 572 ~G~TVIvVeHdl~--~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~ 613 (993)
T 2ygr_A 572 LGNTLIVVEHDED--TIEHADWIVDIGPGAGEHGGRIVHSGPYD 613 (993)
T ss_dssp TTCEEEEECCCHH--HHHTCSEEEEECSSSGGGCCSCCEEECHH
T ss_pred cCCEEEEECCCHH--HHHhCCEEEEecCccccCCCEEEEeeCHH
Confidence 4889999999873 467899999994 469999999865
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=59.04 E-value=12 Score=31.60 Aligned_cols=37 Identities=16% Similarity=-0.101 Sum_probs=29.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecCCCeEE-EecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKRGGKII-YFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~v-y~G~~~ 41 (98)
++.|||++-|.. ..+..+.|++++|.. |+++ |.|+..
T Consensus 594 ~g~tvIivSHdl-~~l~~~adrii~L~~-G~iv~~~G~~~ 631 (986)
T 2iw3_A 594 CGITSITISHDS-VFLDNVCEYIINYEG-LKLRKYKGNFT 631 (986)
T ss_dssp SCSEEEEECSCH-HHHHHHCSEEEEEET-TEEEEEESCHH
T ss_pred CCCEEEEEECCH-HHHHHhCCEEEEEEC-CeeecCCCCHH
Confidence 478999999975 456678999999996 8986 688754
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=56.52 E-value=7.2 Score=30.97 Aligned_cols=38 Identities=5% Similarity=-0.026 Sum_probs=31.4
Q ss_pred CceEEEEecCCcHHHHhhccceEeecC-CCeEEEecCCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKR-GGKIIYFRELGQ 42 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~-gG~~vy~G~~~~ 42 (98)
|.|||+..|.. ..+..+.|++++|.. .|+.+..|++.+
T Consensus 518 g~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~ 556 (608)
T 3j16_B 518 KKTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPES 556 (608)
T ss_dssp TCEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEE
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHH
Confidence 78999999986 467778999999983 279999999874
No 59
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=55.96 E-value=14 Score=31.25 Aligned_cols=37 Identities=14% Similarity=0.071 Sum_probs=30.2
Q ss_pred CCceEEEEecCCcHHHHhhccceEeec-----CCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMK-----RGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~-----~gG~~vy~G~~~ 41 (98)
+|.|||+.-|...- ....|++++|. .+|++++.|++.
T Consensus 915 ~G~TVIvisHdl~~--i~~aDrIivL~p~gg~~~G~Iv~~G~~~ 956 (993)
T 2ygr_A 915 KGNTVIVIEHNLDV--IKTSDWIIDLGPEGGAGGGTVVAQGTPE 956 (993)
T ss_dssp TTCEEEEECCCHHH--HTTCSEEEEEESSSTTSCSEEEEEECHH
T ss_pred CCCEEEEEcCCHHH--HHhCCEEEEECCCcCCCCCEEEEecCHH
Confidence 58899999999763 47899999993 359999999754
No 60
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=54.10 E-value=14 Score=31.30 Aligned_cols=37 Identities=14% Similarity=0.159 Sum_probs=30.1
Q ss_pred CCceEEEEecCCcHHHHhhccceEeec-----CCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMK-----RGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~-----~gG~~vy~G~~~ 41 (98)
+|.|||++-|.... ....|++++|. .+|++++.|++.
T Consensus 897 ~G~TVIvisHdl~~--i~~aDrIivL~p~gG~~~G~Iv~~g~~~ 938 (972)
T 2r6f_A 897 NGDTVLVIEHNLDV--IKTADYIIDLGPEGGDRGGQIVAVGTPE 938 (972)
T ss_dssp TTCEEEEECCCHHH--HTTCSEEEEECSSSTTSCCSEEEEESHH
T ss_pred CCCEEEEEcCCHHH--HHhCCEEEEEcCCCCCCCCEEEEecCHH
Confidence 58899999998753 47899999994 359999999754
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=52.53 E-value=10 Score=31.47 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=29.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeec-----CCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMK-----RGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~-----~gG~~vy~G~~~ 41 (98)
+|.|||+.-|... .+ ...|++++|. .+|++++.|++.
T Consensus 782 ~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~ 823 (842)
T 2vf7_A 782 AGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTPA 823 (842)
T ss_dssp TTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECHH
T ss_pred CCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCHH
Confidence 5889999999864 34 8899999994 258999999753
No 62
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=48.99 E-value=16 Score=26.99 Aligned_cols=31 Identities=6% Similarity=-0.110 Sum_probs=25.0
Q ss_pred ceEEEEecCCcHHHHhhccceEeecCCCeEEEecCCC
Q 037141 5 NCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRELG 41 (98)
Q Consensus 5 ~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~~~ 41 (98)
+|+|++.| +.. ..|+++++.. |+++..|++.
T Consensus 322 qt~i~~th-~~~----~~~~i~~l~~-G~i~~~g~~~ 352 (359)
T 2o5v_A 322 QAIVTGTE-LAP----GAALTLRAQA-GRFTPVADEE 352 (359)
T ss_dssp EEEEEESS-CCT----TCSEEEEEET-TEEEECCCTT
T ss_pred cEEEEEEe-ccc----cCCEEEEEEC-CEEEecCCHH
Confidence 67888878 433 7899999997 8999999875
No 63
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=47.19 E-value=13 Score=24.60 Aligned_cols=27 Identities=0% Similarity=-0.091 Sum_probs=19.8
Q ss_pred CCceEEEEecCCcHH--------HHhhc-cceEeec
Q 037141 3 KTNCSNTILSSSSCS--------RLFNL-KDLMLMK 29 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~--------i~~~F-D~lllL~ 29 (98)
+|.|||++.|..... +..+. |++++|.
T Consensus 171 ~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 171 MGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred CCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 378999999987664 25788 9999995
No 64
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=45.67 E-value=18 Score=28.60 Aligned_cols=39 Identities=5% Similarity=-0.106 Sum_probs=30.6
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecC-CCeEEEecCCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKR-GGKIIYFRELGQ 42 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~-gG~~vy~G~~~~ 42 (98)
++.|||++.|... .+..+.|++++|.. .|+.+..|++.+
T Consensus 521 ~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 521 NEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp TTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred CCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHH
Confidence 3789999999864 56678999999972 278888898873
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=45.35 E-value=11 Score=28.75 Aligned_cols=37 Identities=5% Similarity=-0.080 Sum_probs=28.2
Q ss_pred CceEEEEecCCc--H---HHHhhccc-----eEeecCCCeEEEecCCC
Q 037141 4 TNCSNTILSSSS--C---SRLFNLKD-----LMLMKRGGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs--~---~i~~~FD~-----lllL~~gG~~vy~G~~~ 41 (98)
+.|+|+.+|... . .+..+.|+ +++|.++|+++ .|+..
T Consensus 288 ~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~ 334 (460)
T 2npi_A 288 NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDV 334 (460)
T ss_dssp TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHH
T ss_pred CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHH
Confidence 568888899988 2 45578899 99998338888 88754
No 66
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=45.24 E-value=27 Score=24.72 Aligned_cols=37 Identities=19% Similarity=0.007 Sum_probs=26.3
Q ss_pred CCceEEEEecCCcHHHHhhccce--EeecCCCeEEEecCCC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDL--MLMKRGGKIIYFRELG 41 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~l--llL~~gG~~vy~G~~~ 41 (98)
++.+||++-|.+ ++++..|++ +++..|...+......
T Consensus 271 ~~~~vi~~tH~~--~~~~~~d~~~~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 271 KHTQFIVITHNK--IVMEAADLLHGVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp TTSEEEEECCCT--TGGGGCSEEEEEEESSSCEEEEECCC-
T ss_pred CCCeEEEEECCH--HHHhhCceEEEEEEeCCEEEEEEEEcc
Confidence 467999999996 467888976 7777755666655544
No 67
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=43.59 E-value=3.5 Score=29.96 Aligned_cols=24 Identities=21% Similarity=0.052 Sum_probs=20.8
Q ss_pred ceEEEEecCCcHHHHhhccceEeecC
Q 037141 5 NCSNTILSSSSCSRLFNLKDLMLMKR 30 (98)
Q Consensus 5 ~tvi~tIhQPs~~i~~~FD~lllL~~ 30 (98)
.|+++|.|.++ .....|++++|..
T Consensus 266 ~tvi~t~H~~~--~~~~~dri~~l~~ 289 (330)
T 2pt7_A 266 KGTLTTLHAGS--SEEAFIRLANMSS 289 (330)
T ss_dssp CCEEEEEECSS--HHHHHHHHHHHHH
T ss_pred CEEEEEEcccH--HHHHhhhheehhc
Confidence 37999999998 6778999999987
No 68
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=38.35 E-value=19 Score=24.89 Aligned_cols=29 Identities=7% Similarity=-0.059 Sum_probs=22.0
Q ss_pred CceEEEEecCCc-H--------------------HHHhhccceEeecCCCe
Q 037141 4 TNCSNTILSSSS-C--------------------SRLFNLKDLMLMKRGGK 33 (98)
Q Consensus 4 ~~tvi~tIhQPs-~--------------------~i~~~FD~lllL~~gG~ 33 (98)
+.|||++-|... . .+.+..|++++|.+ |+
T Consensus 187 ~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~-~~ 236 (296)
T 1cr0_A 187 GVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER-NQ 236 (296)
T ss_dssp CCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEE-C-
T ss_pred CCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEec-Cc
Confidence 678999888852 2 67889999999987 44
No 69
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=35.71 E-value=8.6 Score=28.34 Aligned_cols=26 Identities=8% Similarity=0.009 Sum_probs=20.7
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKR 30 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~ 30 (98)
.|.+|++|+|..+.. +.+|+++.|.+
T Consensus 220 ~G~~vl~t~H~~~~~--~~~dRli~l~~ 245 (356)
T 3jvv_A 220 TGHLVFGTLHTTSAA--KTIDRVVDVFP 245 (356)
T ss_dssp TTCEEEEEESCSSHH--HHHHHHHHTSC
T ss_pred cCCEEEEEEccChHH--HHHHHHhhhcC
Confidence 488999999999864 67888877754
No 70
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=34.97 E-value=36 Score=26.31 Aligned_cols=37 Identities=11% Similarity=-0.070 Sum_probs=29.9
Q ss_pred CceEEEEecCCcHHHHhhccceEeecC-CCeEEEecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKR-GGKIIYFRELG 41 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~-gG~~vy~G~~~ 41 (98)
+.|||+..|.. ..+..+.|++++|.. .|+.+..|++.
T Consensus 452 g~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~ 489 (538)
T 1yqt_A 452 EKTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPM 489 (538)
T ss_dssp TCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHH
Confidence 78999998975 456778999999973 17888899886
No 71
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=34.89 E-value=22 Score=25.80 Aligned_cols=27 Identities=11% Similarity=-0.061 Sum_probs=21.2
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGG 32 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG 32 (98)
..+||++-|.|. +....|+++++.+.|
T Consensus 336 ~~~vi~~th~~~--~~~~~d~~~~l~k~~ 362 (371)
T 3auy_A 336 IPQMIIITHHRE--LEDVADVIINVKKDG 362 (371)
T ss_dssp CSEEEEEESCGG--GGGGCSEEEEEEESS
T ss_pred CCeEEEEEChHH--HHhhCCEEEEEEecC
Confidence 458999999984 578899999997433
No 72
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=34.58 E-value=22 Score=22.98 Aligned_cols=27 Identities=4% Similarity=-0.081 Sum_probs=19.6
Q ss_pred CceEEEEecCCc-------HHHHhhccceEeecC
Q 037141 4 TNCSNTILSSSS-------CSRLFNLKDLMLMKR 30 (98)
Q Consensus 4 ~~tvi~tIhQPs-------~~i~~~FD~lllL~~ 30 (98)
+.|||++.|... ..+-+..|++++|..
T Consensus 158 ~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 158 NFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp TEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred CCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 678999888873 457888999999975
No 73
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=34.11 E-value=19 Score=27.47 Aligned_cols=25 Identities=4% Similarity=-0.094 Sum_probs=21.0
Q ss_pred CceEEEEecCCcHHHHhhccceEeecC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKR 30 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~ 30 (98)
+.|||++-|.|. +....|++++|.+
T Consensus 448 ~~~vi~itH~~~--~~~~~d~~~~~~~ 472 (517)
T 4ad8_A 448 TRQVLVVTHLAQ--IAARAHHHYKVEK 472 (517)
T ss_dssp HSEEEEECCCHH--HHHHSSEEEEEEC
T ss_pred CCEEEEEecCHH--HHHhCCEEEEEec
Confidence 679999999965 5667999999965
No 74
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=32.42 E-value=26 Score=23.32 Aligned_cols=17 Identities=18% Similarity=0.497 Sum_probs=15.1
Q ss_pred hccceEeecCCCeEEEe
Q 037141 21 NLKDLMLMKRGGKIIYF 37 (98)
Q Consensus 21 ~FD~lllL~~gG~~vy~ 37 (98)
|||.+.+..+.|+++|.
T Consensus 1 M~dQf~IFTp~GqVLy~ 17 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQ 17 (158)
T ss_dssp CCCEEEEECTTCBEEEE
T ss_pred CcceEEEeccCceEEEE
Confidence 68999999988999995
No 75
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=32.35 E-value=24 Score=25.25 Aligned_cols=25 Identities=4% Similarity=-0.114 Sum_probs=20.7
Q ss_pred CCceEEEEecCCcHHHHhhccceEeec
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMK 29 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~ 29 (98)
++.|||++-|.+ ++....|++++|.
T Consensus 303 ~~~~vi~~sH~~--~~~~~~d~~~~l~ 327 (339)
T 3qkt_A 303 KIPQVILVSHDE--ELKDAADHVIRIS 327 (339)
T ss_dssp GSSEEEEEESCG--GGGGGCSEEEEEE
T ss_pred cCCEEEEEEChH--HHHHhCCEEEEEE
Confidence 367999999984 5788999999886
No 76
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=29.03 E-value=16 Score=25.43 Aligned_cols=26 Identities=4% Similarity=0.010 Sum_probs=19.7
Q ss_pred CCceEEEEecCCcHHHHhhccceEeecC
Q 037141 3 KTNCSNTILSSSSCSRLFNLKDLMLMKR 30 (98)
Q Consensus 3 ~~~tvi~tIhQPs~~i~~~FD~lllL~~ 30 (98)
.|.+|+++.|..+ +...+|++++|.+
T Consensus 122 ~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 122 TGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp TTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred cCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 4789999999987 4567787766653
No 77
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=26.83 E-value=14 Score=24.32 Aligned_cols=29 Identities=14% Similarity=-0.027 Sum_probs=19.1
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCe
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGK 33 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~ 33 (98)
+.|||++-|.. .++..+.|++++|.+.|+
T Consensus 178 g~tvi~vtHdl-~~~~~~~d~i~~l~~p~~ 206 (207)
T 1znw_A 178 DFDKVVVNRRL-ESACAELVSLLVGTAPGS 206 (207)
T ss_dssp GSSEEEECSSH-HHHHHHHHHHHC------
T ss_pred cCcEEEECCCH-HHHHHHHHHHHHhccCCC
Confidence 67888888874 568888999999865443
No 78
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=25.71 E-value=19 Score=30.47 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=25.0
Q ss_pred CceEEEEecCCcHHHHhhccceEeecCCCeEEEecC
Q 037141 4 TNCSNTILSSSSCSRLFNLKDLMLMKRGGKIIYFRE 39 (98)
Q Consensus 4 ~~tvi~tIhQPs~~i~~~FD~lllL~~gG~~vy~G~ 39 (98)
+.|||++-|... .+..+.|++++|.. |+++..|+
T Consensus 948 g~tVIiISHD~e-~v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 948 EGGVIIITHSAE-FTKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp SSEEEEECSCHH-HHTTTCCEEECCBT-TBCCC---
T ss_pred CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 458999989854 46678999999986 88887764
No 79
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=23.41 E-value=23 Score=27.03 Aligned_cols=30 Identities=7% Similarity=-0.074 Sum_probs=24.0
Q ss_pred CCceEEEEecCCc---------HHHHhhccceEeecCCCe
Q 037141 3 KTNCSNTILSSSS---------CSRLFNLKDLMLMKRGGK 33 (98)
Q Consensus 3 ~~~tvi~tIhQPs---------~~i~~~FD~lllL~~gG~ 33 (98)
++.|||++-|... ..+..+.|++++|.. |+
T Consensus 406 ~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~-ge 444 (525)
T 1tf7_A 406 EEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY-VE 444 (525)
T ss_dssp TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE-EE
T ss_pred CCCEEEEEECcccccCcccccCcccceeeeEEEEEEE-EE
Confidence 4789999999982 556678899999986 55
Done!