BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037142
(383 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 467 bits (1202), Expect = e-132, Method: Compositional matrix adjust.
Identities = 237/355 (66%), Positives = 274/355 (77%), Gaps = 3/355 (0%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T E+ K V+DHGAVPIFVKLL S SDD+R Q+VWALGN+A +SP+ RDLVL A
Sbjct: 144 NIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGA 203
Query: 61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
L+PLL QLN H LSM R ATWTLSN C GKP+P F+Q RP LP LA+L+HSNDE V+++
Sbjct: 204 LLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTD 263
Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
ACW LS L DG ND+IQAVIEAGVCPRLV+LL HPS SVL AL TVGNI GD +QT
Sbjct: 264 ACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 322
Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
II+ ALP LL LL N K SIK ACW ISNITAGN++QIQAVI+AG+IGPLVNLLQ
Sbjct: 323 CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT 382
Query: 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENIL 300
A F IKKEAAWAISNAT GG+H+QIKYL EGCIK +IVTVCL+ LENIL
Sbjct: 383 AEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENIL 442
Query: 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
KVGE +K GDVN ++Q+++EA+GLEKIENLQ HDN EI+EK+ KILE YW
Sbjct: 443 KVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 495
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 3/165 (1%)
Query: 97 DQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHP 156
D+ LP + V+S+D ++ A L ++ I+ VI++GV PR V+ L
Sbjct: 70 DKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE 129
Query: 157 SQSVLT-QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNIT 215
L +A + NIA G T +I+ GA+P + LL + ++ A W + N+
Sbjct: 130 DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL-GSSSDDVREQAVWALGNVA 188
Query: 216 AGNREQIQAVIDAGLIGPLV-NLLQNAVFYIKKEAAWAISNATFG 259
+ + V+ G + PL+ L ++ + + A W +SN G
Sbjct: 189 GDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 466 bits (1200), Expect = e-132, Method: Compositional matrix adjust.
Identities = 237/355 (66%), Positives = 274/355 (77%), Gaps = 3/355 (0%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T E+ K V+DHGAVPIFVKLL S SDD+R Q+VWALGN+A +SP+ RDLVL A
Sbjct: 106 NIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGA 165
Query: 61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
L+PLL QLN H LSM R ATWTLSN C GKP+P F+Q RP LP LA+L+HSNDE V+++
Sbjct: 166 LLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTD 225
Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
ACW LS L DG ND+IQAVIEAGVCPRLV+LL HPS SVL AL TVGNI GD +QT
Sbjct: 226 ACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 284
Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
II+ ALP LL LL N K SIK ACW ISNITAGN++QIQAVI+AG+IGPLVNLLQ
Sbjct: 285 CIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT 344
Query: 241 AVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENIL 300
A F IKKEAAWAISNAT GG+H+QIKYL EGCIK +IVTVCL+ LENIL
Sbjct: 345 AEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENIL 404
Query: 301 KVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
KVGE +K GDVN ++Q+++EA+GLEKIENLQ HDN EI+EK+ KILE YW
Sbjct: 405 KVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 457
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 3/159 (1%)
Query: 103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLT 162
LP + V+S+D ++ A L ++ I+ VI++GV PR V+ L L
Sbjct: 38 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQ 97
Query: 163 -QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ 221
+A + NIA G T +I+ GA+P + LL + ++ A W + N+ + +
Sbjct: 98 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL-GSSSDDVREQAVWALGNVAGDSPKC 156
Query: 222 IQAVIDAGLIGPLV-NLLQNAVFYIKKEAAWAISNATFG 259
V+ G + PL+ L ++ + + A W +SN G
Sbjct: 157 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 195
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 312 bits (800), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 180/356 (50%), Positives = 229/356 (64%), Gaps = 5/356 (1%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS + V+ GAVPIF++LL+S +D++ Q+VWALGNIA +S RD VL
Sbjct: 91 NIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNI 150
Query: 61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
L PLL + L+M R A W LSNLC GK P P F +V PCL L+ L+ +D V++
Sbjct: 151 LPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLA 210
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
+ACW LS L DG ND+IQAVI+AGVC RLV+LL H V++ AL VGNI GD QT
Sbjct: 211 DACWALSYLSDG-PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQT 269
Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
I+NC AL L L+ + K SIK ACW ISNITAGNR QIQ VIDA + L+++LQ
Sbjct: 270 QVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ 328
Query: 240 NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENI 299
A F +KEAAWAI+NAT GG+ EQIKYL GCIK +IV V L LENI
Sbjct: 329 TAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI 388
Query: 300 LKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
L++GE E + +N Y L+EEA GL+KIE LQ H+N EI++K+ ++E Y+
Sbjct: 389 LRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYI 245
G + + L +++ + W+++NI +GN Q + VI AG + + LL + +
Sbjct: 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDV 123
Query: 246 KKEAAWAISN 255
+++A WA+ N
Sbjct: 124 QEQAVWALGN 133
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 311 bits (798), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 180/356 (50%), Positives = 229/356 (64%), Gaps = 5/356 (1%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS + V+ GAVPIF++LL+S +D++ Q+VWALGNIA +S RD VL
Sbjct: 88 NIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNI 147
Query: 61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
L PLL + L+M R A W LSNLC GK P P F +V PCL L+ L+ +D V++
Sbjct: 148 LPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLA 207
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
+ACW LS L DG ND+IQAVI+AGVC RLV+LL H V++ AL VGNI GD QT
Sbjct: 208 DACWALSYLSDG-PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQT 266
Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
I+NC AL L L+ + K SIK ACW ISNITAGNR QIQ VIDA + L+++LQ
Sbjct: 267 QVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ 325
Query: 240 NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENI 299
A F +KEAAWAI+NAT GG+ EQIKYL GCIK +IV V L LENI
Sbjct: 326 TAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI 385
Query: 300 LKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
L++GE E + +N Y L+EEA GL+KIE LQ H+N EI++K+ ++E Y+
Sbjct: 386 LRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 439
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYI 245
G + + L +++ + W+++NI +GN Q + VI AG + + LL + +
Sbjct: 61 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDV 120
Query: 246 KKEAAWAISN 255
+++A WA+ N
Sbjct: 121 QEQAVWALGN 130
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 305 bits (782), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 176/358 (49%), Positives = 236/358 (65%), Gaps = 8/358 (2%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T K VVD AVP+F++LL + S +++ Q++WALGN+A +S +RD VL A
Sbjct: 157 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 216
Query: 61 LIPLLTQLNNHENLSMKRIATWTLSNLC-GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
+ P+L N+++ S+ R ATWTLSNLC G KP+P + V LPTLA+L++S D +
Sbjct: 217 MEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 275
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
+ACW +S L DG + + IQAVI+ + RLV+LL H S V T AL VGNI G+ QT
Sbjct: 276 DACWAISYLSDGPQ-EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQT 334
Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
+IN G LP L LL+ + K +IK ACW ISNITAGN EQIQAVIDA LI PLV LL+
Sbjct: 335 QVVINAGVLP-ALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE 393
Query: 240 NAVFYIKKEAAWAISNATFGGTHEQ--IKYLEREGCIKXXXXXXXXXXXQIVTVCLKALE 297
A + KKEA WAISNA+ GG I+YL +GCIK +I+ V L ALE
Sbjct: 394 VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 453
Query: 298 NILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
NILK+GEA+K ++N+ A +E+A G+EKI N Q+++N +I+EK+ KI+ETY+
Sbjct: 454 NILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Query: 95 IFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLG 154
+ Q++ LP + Q ++S+D +A + I VI+AGV PRLV+ +
Sbjct: 81 FYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMR 140
Query: 155 HPSQSVLT-QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISN 213
+L +A + NIA G +QT +++ A+P + LL +K A W + N
Sbjct: 141 ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY-TGSVEVKEQAIWALGN 199
Query: 214 ITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG 259
+ + + V+ + P++ L + + + A W +SN G
Sbjct: 200 VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
+I G +P L+ + +N ++ A W ++NI +G Q + V+DA + + LL
Sbjct: 126 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 185
Query: 242 VFYIKKEAAWAISNATFGGT 261
+K++A WA+ N T
Sbjct: 186 SVEVKEQAIWALGNVAGDST 205
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 305 bits (781), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 176/358 (49%), Positives = 236/358 (65%), Gaps = 8/358 (2%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T K VVD AVP+F++LL + S +++ Q++WALGN+A +S +RD VL A
Sbjct: 69 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 128
Query: 61 LIPLLTQLNNHENLSMKRIATWTLSNLC-GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
+ P+L N+++ S+ R ATWTLSNLC G KP+P + V LPTLA+L++S D +
Sbjct: 129 MEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 187
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
+ACW +S L DG + + IQAVI+ + RLV+LL H S V T AL VGNI G+ QT
Sbjct: 188 DACWAISYLSDGPQ-EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQT 246
Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
+IN G LP L LL+ + K +IK ACW ISNITAGN EQIQAVIDA LI PLV LL+
Sbjct: 247 QVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE 305
Query: 240 NAVFYIKKEAAWAISNATFGGTHEQ--IKYLEREGCIKXXXXXXXXXXXQIVTVCLKALE 297
A + KKEA WAISNA+ GG I+YL +GCIK +I+ V L ALE
Sbjct: 306 VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 365
Query: 298 NILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
NILK+GEA+K ++N+ A +E+A G+EKI N Q+++N +I+EK+ KI+ETY+
Sbjct: 366 NILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 421
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Query: 103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLT 162
LP + Q ++S+D +A + I VI+AGV PRLV+ + +L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 163 -QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ 221
+A + NIA G +QT +++ A+P + LL +K A W + N+ + +
Sbjct: 61 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDY 119
Query: 222 IQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG 259
V+ + P++ L + + + A W +SN G
Sbjct: 120 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 157
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
+I G +P L+ + +N ++ A W ++NI +G Q + V+DA + + LL
Sbjct: 38 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 97
Query: 242 VFYIKKEAAWAISNATFGGT 261
+K++A WA+ N T
Sbjct: 98 SVEVKEQAIWALGNVAGDST 117
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 304 bits (778), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 175/358 (48%), Positives = 236/358 (65%), Gaps = 8/358 (2%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T K VVD AVP+F++LL + S +++ Q++WALGN+A +S +RD VL A
Sbjct: 69 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 128
Query: 61 LIPLLTQLNNHENLSMKRIATWTLSNLC-GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
+ P+L N+++ S+ R ATWTLSNLC G KP+P + V LPTLA+L++S D +
Sbjct: 129 MEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 187
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
+ACW +S L DG + + IQAVI+ + RLV+LL H S V T AL VGNI G+ QT
Sbjct: 188 DACWAISYLSDGPQ-EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQT 246
Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
+IN G LP L LL+ + K +IK ACW ISNITAGN EQIQAVIDA LI PLV LL+
Sbjct: 247 QVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE 305
Query: 240 NAVFYIKKEAAWAISNATFGGTHEQ--IKYLEREGCIKXXXXXXXXXXXQIVTVCLKALE 297
A + KKEA WAISNA+ GG I+YL +GCIK +I+ V L ALE
Sbjct: 306 VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 365
Query: 298 NILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
NI+K+GEA+K ++N+ A +E+A G+EKI N Q+++N +I+EK+ KI+ETY+
Sbjct: 366 NIIKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 421
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Query: 103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLT 162
LP + Q ++S+D +A + I VI+AGV PRLV+ + +L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 163 -QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ 221
+A + NIA G +QT +++ A+P + LL +K A W + N+ + +
Sbjct: 61 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDY 119
Query: 222 IQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG 259
V+ + P++ L + + + A W +SN G
Sbjct: 120 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 157
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
+I G +P L+ + +N ++ A W ++NI +G Q + V+DA + + LL
Sbjct: 38 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 97
Query: 242 VFYIKKEAAWAISNATFGGT 261
+K++A WA+ N T
Sbjct: 98 SVEVKEQAIWALGNVAGDST 117
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 303 bits (775), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 176/358 (49%), Positives = 235/358 (65%), Gaps = 8/358 (2%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T K VVD AVP+F++LL + S +++ Q++WALGN+A +S +RD VL A
Sbjct: 70 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 129
Query: 61 LIPLLTQLNNHENLSMKRIATWTLSNLC-GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
+ P+L N+++ S+ R ATWTLSNLC G KP+P + V LPTLA+L++S D +
Sbjct: 130 MEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 188
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
+ACW +S L DG + + IQAVI+ + RLV+LL H S V T AL VGNI G+ QT
Sbjct: 189 DACWAISYLSDGPQ-EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQT 247
Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
+IN G LP L LL+ + K +IK ACW ISNITAGN EQIQAVIDA LI PLV LL+
Sbjct: 248 QVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE 306
Query: 240 NAVFYIKKEAAWAISNATFGGTHEQ--IKYLEREGCIKXXXXXXXXXXXQIVTVCLKALE 297
A KKEA WAISNA+ GG I+YL +GCIK +I+ V L ALE
Sbjct: 307 VAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 366
Query: 298 NILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
NILK+GEA+K ++N+ A +E+A G+EKI N Q+++N +I+EK+ KI+ETY+
Sbjct: 367 NILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 422
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Query: 103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLT 162
LP + Q ++S+D +A + I VI+AGV PRLV+ + +L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 163 -QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ 221
+A + NIA G +QT +++ A+P + LL +K A W + N+ + +
Sbjct: 62 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDY 120
Query: 222 IQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG 259
V+ + P++ L + + + A W +SN G
Sbjct: 121 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 158
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
+I G +P L+ + +N ++ A W ++NI +G Q + V+DA + + LL
Sbjct: 39 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 98
Query: 242 VFYIKKEAAWAISNATFGGT 261
+K++A WA+ N T
Sbjct: 99 SVEVKEQAIWALGNVAGDST 118
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 303 bits (775), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 176/358 (49%), Positives = 235/358 (65%), Gaps = 8/358 (2%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T K VVD AVP+F++LL + S +++ Q++WALGN+A +S +RD VL A
Sbjct: 70 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 129
Query: 61 LIPLLTQLNNHENLSMKRIATWTLSNLC-GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
+ P+L N+++ S+ R ATWTLSNLC G KP+P + V LPTLA+L++S D +
Sbjct: 130 MEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 188
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
+ACW +S L DG + + IQAVI+ + RLV+LL H S V T AL VGNI G+ QT
Sbjct: 189 DACWAISYLSDGPQ-EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQT 247
Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
+IN G LP L LL+ + K +IK ACW ISNITAGN EQIQAVIDA LI PLV LL+
Sbjct: 248 QVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE 306
Query: 240 NAVFYIKKEAAWAISNATFGGTHEQ--IKYLEREGCIKXXXXXXXXXXXQIVTVCLKALE 297
A KKEA WAISNA+ GG I+YL +GCIK +I+ V L ALE
Sbjct: 307 VAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 366
Query: 298 NILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
NILK+GEA+K ++N+ A +E+A G+EKI N Q+++N +I+EK+ KI+ETY+
Sbjct: 367 NILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 422
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Query: 103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLT 162
LP + Q ++S+D +A + I VI+AGV PRLV+ + +L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 163 -QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ 221
+A + NIA G +QT +++ A+P + LL +K A W + N+ + +
Sbjct: 62 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDY 120
Query: 222 IQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG 259
V+ + P++ L + + + A W +SN G
Sbjct: 121 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 158
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
+I G +P L+ + +N ++ A W ++NI +G Q + V+DA + + LL
Sbjct: 39 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 98
Query: 242 VFYIKKEAAWAISNATFGGT 261
+K++A WA+ N T
Sbjct: 99 SVEVKEQAIWALGNVAGDST 118
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 303 bits (775), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 176/358 (49%), Positives = 235/358 (65%), Gaps = 8/358 (2%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T K VVD AVP+F++LL + S +++ Q++WALGN+A +S +RD VL A
Sbjct: 71 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 130
Query: 61 LIPLLTQLNNHENLSMKRIATWTLSNLC-GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
+ P+L N+++ S+ R ATWTLSNLC G KP+P + V LPTLA+L++S D +
Sbjct: 131 MEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 189
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
+ACW +S L DG + + IQAVI+ + RLV+LL H S V T AL VGNI G+ QT
Sbjct: 190 DACWAISYLSDGPQ-EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQT 248
Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
+IN G LP L LL+ + K +IK ACW ISNITAGN EQIQAVIDA LI PLV LL+
Sbjct: 249 QVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE 307
Query: 240 NAVFYIKKEAAWAISNATFGGTHEQ--IKYLEREGCIKXXXXXXXXXXXQIVTVCLKALE 297
A KKEA WAISNA+ GG I+YL +GCIK +I+ V L ALE
Sbjct: 308 VAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 367
Query: 298 NILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
NILK+GEA+K ++N+ A +E+A G+EKI N Q+++N +I+EK+ KI+ETY+
Sbjct: 368 NILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 423
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Query: 103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLT 162
LP + Q ++S+D +A + I VI+AGV PRLV+ + +L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 62
Query: 163 -QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ 221
+A + NIA G +QT +++ A+P + LL +K A W + N+ + +
Sbjct: 63 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDY 121
Query: 222 IQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG 259
V+ + P++ L + + + A W +SN G
Sbjct: 122 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 159
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
+I G +P L+ + +N ++ A W ++NI +G Q + V+DA + + LL
Sbjct: 40 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 99
Query: 242 VFYIKKEAAWAISNATFGGT 261
+K++A WA+ N T
Sbjct: 100 SVEVKEQAIWALGNVAGDST 119
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 303 bits (775), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 176/358 (49%), Positives = 235/358 (65%), Gaps = 8/358 (2%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T K VVD AVP+F++LL + S +++ Q++WALGN+A +S +RD VL A
Sbjct: 71 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 130
Query: 61 LIPLLTQLNNHENLSMKRIATWTLSNLC-GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMS 119
+ P+L N+++ S+ R ATWTLSNLC G KP+P + V LPTLA+L++S D +
Sbjct: 131 MEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLV 189
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
+ACW +S L DG + + IQAVI+ + RLV+LL H S V T AL VGNI G+ QT
Sbjct: 190 DACWAISYLSDGPQ-EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQT 248
Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
+IN G LP L LL+ + K +IK ACW ISNITAGN EQIQAVIDA LI PLV LL+
Sbjct: 249 QVVINAGVLPAL-RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE 307
Query: 240 NAVFYIKKEAAWAISNATFGGTHEQ--IKYLEREGCIKXXXXXXXXXXXQIVTVCLKALE 297
A KKEA WAISNA+ GG I+YL +GCIK +I+ V L ALE
Sbjct: 308 VAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALE 367
Query: 298 NILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
NILK+GEA+K ++N+ A +E+A G+EKI N Q+++N +I+EK+ KI+ETY+
Sbjct: 368 NILKMGEADKEARG--LNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 423
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Query: 103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLT 162
LP + Q ++S+D +A + I VI+AGV PRLV+ + +L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 62
Query: 163 -QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ 221
+A + NIA G +QT +++ A+P + LL +K A W + N+ + +
Sbjct: 63 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDY 121
Query: 222 IQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFG 259
V+ + P++ L + + + A W +SN G
Sbjct: 122 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 159
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
+I G +P L+ + +N ++ A W ++NI +G Q + V+DA + + LL
Sbjct: 40 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 99
Query: 242 VFYIKKEAAWAISNATFGGT 261
+K++A WA+ N T
Sbjct: 100 SVEVKEQAIWALGNVAGDST 119
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 280 bits (716), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/361 (44%), Positives = 217/361 (60%), Gaps = 14/361 (3%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T E KAVVD GA+P F+ LLASP I Q+VWALGNIA + FRDLV+ A
Sbjct: 127 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 186
Query: 61 LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
+ PLL L + ++ R TWTLSNLC K P P D V LPTL +L+H ND
Sbjct: 187 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 246
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
V++++CW +S L DG N+ I+ V++ GV P+LVKLLG ++T AL +GNI G
Sbjct: 247 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 305
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
QT +I+ GAL LL N KT+I+ A W +SNITAG ++QIQ V++ GL+ LV
Sbjct: 306 DEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
+L A F +KEAAWAI+N T GGT EQI YL G I+ +I+ V L A
Sbjct: 365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 424
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
+ NI + E +G+ + + ++EE GL+KIE LQRH+N +++ S ++E Y+
Sbjct: 425 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477
Query: 356 C 356
Sbjct: 478 S 478
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
++SN+ A L K I +I AG+ P+ V LG S + ++ +
Sbjct: 66 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 125
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
NIA G QT +++ GA+P + LL H I A W + NI VI
Sbjct: 126 TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 184
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
G I PL+ LL A Y++
Sbjct: 185 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
++ WAIS T G +E+I+ + ++G + IVT L+A+ NI+
Sbjct: 245 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 303
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
+ + D G + + L+ K N+Q+ + + +A
Sbjct: 304 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 345
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 280 bits (716), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/361 (44%), Positives = 217/361 (60%), Gaps = 14/361 (3%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T E KAVVD GA+P F+ LLASP I Q+VWALGNIA + FRDLV+ A
Sbjct: 113 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 172
Query: 61 LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
+ PLL L + ++ R TWTLSNLC K P P D V LPTL +L+H ND
Sbjct: 173 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 232
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
V++++CW +S L DG N+ I+ V++ GV P+LVKLLG ++T AL +GNI G
Sbjct: 233 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 291
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
QT +I+ GAL LL N KT+I+ A W +SNITAG ++QIQ V++ GL+ LV
Sbjct: 292 DEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 350
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
+L A F +KEAAWAI+N T GGT EQI YL G I+ +I+ V L A
Sbjct: 351 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 410
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
+ NI + E +G+ + + ++EE GL+KIE LQRH+N +++ S ++E Y+
Sbjct: 411 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 463
Query: 356 C 356
Sbjct: 464 S 464
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
++SN+ A L K I +I AG+ P+ V LG S + ++ +
Sbjct: 52 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 111
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
NIA G QT +++ GA+P + LL H I A W + NI VI
Sbjct: 112 TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 170
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
G I PL+ LL A Y++
Sbjct: 171 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 230
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
++ WAIS T G +E+I+ + ++G + IVT L+A+ NI+
Sbjct: 231 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 289
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
+ + D G + + L+ K N+Q+ + + +A
Sbjct: 290 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 331
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 280 bits (715), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/361 (44%), Positives = 217/361 (60%), Gaps = 14/361 (3%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T E KAVVD GA+P F+ LLASP I Q+VWALGNIA + FRDLV+ A
Sbjct: 127 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 186
Query: 61 LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
+ PLL L + ++ R TWTLSNLC K P P D V LPTL +L+H ND
Sbjct: 187 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 246
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
V++++CW +S L DG N+ I+ V++ GV P+LVKLLG ++T AL +GNI G
Sbjct: 247 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 305
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
QT +I+ GAL LL N KT+I+ A W +SNITAG ++QIQ V++ GL+ LV
Sbjct: 306 DEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
+L A F +KEAAWAI+N T GGT EQI YL G I+ +I+ V L A
Sbjct: 365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 424
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
+ NI + E +G+ + + ++EE GL+KIE LQRH+N +++ S ++E Y+
Sbjct: 425 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477
Query: 356 C 356
Sbjct: 478 S 478
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
++SN+ A L K I +I AG+ P+ V LG S + ++ +
Sbjct: 66 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 125
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
NIA G QT +++ GA+P + LL H I A W + NI VI
Sbjct: 126 TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 184
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
G I PL+ LL A Y++
Sbjct: 185 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
++ WAIS T G +E+I+ + ++G + IVT L+A+ NI+
Sbjct: 245 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 303
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
+ + D G + + L+ K N+Q+ + + +A
Sbjct: 304 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 345
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 280 bits (715), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/361 (44%), Positives = 217/361 (60%), Gaps = 14/361 (3%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T E KAVVD GA+P F+ LLASP I Q+VWALGNIA + FRDLV+ A
Sbjct: 127 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 186
Query: 61 LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
+ PLL L + ++ R TWTLSNLC K P P D V LPTL +L+H ND
Sbjct: 187 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 246
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
V++++CW +S L DG N+ I+ V++ GV P+LVKLLG ++T AL +GNI G
Sbjct: 247 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 305
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
QT +I+ GAL LL N KT+I+ A W +SNITAG ++QIQ V++ GL+ LV
Sbjct: 306 DEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
+L A F +KEAAWAI+N T GGT EQI YL G I+ +I+ V L A
Sbjct: 365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 424
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
+ NI + E +G+ + + ++EE GL+KIE LQRH+N +++ S ++E Y+
Sbjct: 425 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477
Query: 356 C 356
Sbjct: 478 S 478
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
++SN+ A L K I +I AG+ P+ V LG S + ++ +
Sbjct: 66 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 125
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
NIA G QT +++ GA+P + LL H I A W + NI VI
Sbjct: 126 TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 184
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
G I PL+ LL A Y++
Sbjct: 185 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
++ WAIS T G +E+I+ + ++G + IVT L+A+ NI+
Sbjct: 245 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 303
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
+ + D G + + L+ K N+Q+ + + +A
Sbjct: 304 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 345
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/360 (44%), Positives = 217/360 (60%), Gaps = 14/360 (3%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T E KAVVD GA+P F+ LLASP I Q+VWALGNIA + FRDLV+ A
Sbjct: 111 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 170
Query: 61 LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
+ PLL L + ++ R TWTLSNLC K P P D V LPTL +L+H ND
Sbjct: 171 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 230
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
V++++CW +S L DG N+ I+ V++ GV P+LVKLLG ++T AL +GNI G
Sbjct: 231 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 289
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
QT +I+ GAL LL N KT+I+ A W +SNITAG ++QIQ V++ GL+ LV
Sbjct: 290 DEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 348
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
+L A F +KEAAWAI+N T GGT EQI YL G I+ +I+ V L A
Sbjct: 349 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 408
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
+ NI + E +G+ + + ++EE GL+KIE LQRH+N +++ S ++E Y+
Sbjct: 409 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 461
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
++SN+ A L K I +I AG+ P+ V LG S + ++ +
Sbjct: 50 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 109
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
NIA G QT +++ GA+P + LL H I A W + NI VI
Sbjct: 110 TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 168
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
G I PL+ LL A Y++
Sbjct: 169 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 228
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
++ WAIS T G +E+I+ + ++G + IVT L+A+ NI+
Sbjct: 229 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 287
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
+ + D G + + L+ K N+Q+ + + +A
Sbjct: 288 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 329
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/360 (44%), Positives = 217/360 (60%), Gaps = 14/360 (3%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T E KAVVD GA+P F+ LLASP I Q+VWALGNIA + FRDLV+ A
Sbjct: 83 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 142
Query: 61 LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
+ PLL L + ++ R TWTLSNLC K P P D V LPTL +L+H ND
Sbjct: 143 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 202
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
V++++CW +S L DG N+ I+ V++ GV P+LVKLLG ++T AL +GNI G
Sbjct: 203 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 261
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
QT +I+ GAL LL N KT+I+ A W +SNITAG ++QIQ V++ GL+ LV
Sbjct: 262 DEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 320
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
+L A F +KEAAWAI+N T GGT EQI YL G I+ +I+ V L A
Sbjct: 321 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 380
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
+ NI + E +G+ + + ++EE GL+KIE LQRH+N +++ S ++E Y+
Sbjct: 381 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 433
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
++SN+ A L K I +I AG+ P+ V LG S + ++ +
Sbjct: 22 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 81
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
NIA G QT +++ GA+P + LL H I A W + NI VI
Sbjct: 82 TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 140
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
G I PL+ LL A Y++
Sbjct: 141 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 200
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
++ WAIS T G +E+I+ + ++G + IVT L+A+ NI+
Sbjct: 201 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 259
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
+ + D G + + L+ K N+Q+ + + +A
Sbjct: 260 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 301
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 279 bits (713), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/360 (44%), Positives = 217/360 (60%), Gaps = 14/360 (3%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T E KAVVD GA+P F+ LLASP I Q+VWALGNIA + FRDLV+ A
Sbjct: 76 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 135
Query: 61 LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
+ PLL L + ++ R TWTLSNLC K P P D V LPTL +L+H ND
Sbjct: 136 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 195
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
V++++CW +S L DG N+ I+ V++ GV P+LVKLLG ++T AL +GNI G
Sbjct: 196 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 254
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
QT +I+ GAL LL N KT+I+ A W +SNITAG ++QIQ V++ GL+ LV
Sbjct: 255 DEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 313
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
+L A F +KEAAWAI+N T GGT EQI YL G I+ +I+ V L A
Sbjct: 314 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 373
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
+ NI + E +G+ + + ++EE GL+KIE LQRH+N +++ S ++E Y+
Sbjct: 374 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 426
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
++SN+ A L K I +I AG+ P+ V LG S + ++ +
Sbjct: 15 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 74
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
NIA G QT +++ GA+P + LL H I A W + NI VI
Sbjct: 75 TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 133
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
G I PL+ LL A Y++
Sbjct: 134 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 193
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
++ WAIS T G +E+I+ + ++G + IVT L+A+ NI+
Sbjct: 194 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 252
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
+ + D G + + L+ K N+Q+ + + +A
Sbjct: 253 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 294
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 279 bits (713), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/360 (44%), Positives = 217/360 (60%), Gaps = 14/360 (3%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T E KAVVD GA+P F+ LLASP I Q+VWALGNIA + FRDLV+ A
Sbjct: 77 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 136
Query: 61 LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
+ PLL L + ++ R TWTLSNLC K P P D V LPTL +L+H ND
Sbjct: 137 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 196
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
V++++CW +S L DG N+ I+ V++ GV P+LVKLLG ++T AL +GNI G
Sbjct: 197 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 255
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
QT +I+ GAL LL N KT+I+ A W +SNITAG ++QIQ V++ GL+ LV
Sbjct: 256 DEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 314
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
+L A F +KEAAWAI+N T GGT EQI YL G I+ +I+ V L A
Sbjct: 315 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 374
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
+ NI + E +G+ + + ++EE GL+KIE LQRH+N +++ S ++E Y+
Sbjct: 375 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 427
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
++SN+ A L K I +I AG+ P+ V LG S + ++ +
Sbjct: 16 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 75
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
NIA G QT +++ GA+P + LL H I A W + NI VI
Sbjct: 76 TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 134
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
G I PL+ LL A Y++
Sbjct: 135 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 194
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
++ WAIS T G +E+I+ + ++G + IVT L+A+ NI+
Sbjct: 195 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 253
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
+ + D G + + L+ K N+Q+ + + +A
Sbjct: 254 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 295
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 279 bits (713), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/360 (44%), Positives = 217/360 (60%), Gaps = 14/360 (3%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T E KAVVD GA+P F+ LLASP I Q+VWALGNIA + FRDLV+ A
Sbjct: 77 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 136
Query: 61 LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
+ PLL L + ++ R TWTLSNLC K P P D V LPTL +L+H ND
Sbjct: 137 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 196
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
V++++CW +S L DG N+ I+ V++ GV P+LVKLLG ++T AL +GNI G
Sbjct: 197 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 255
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
QT +I+ GAL LL N KT+I+ A W +SNITAG ++QIQ V++ GL+ LV
Sbjct: 256 DEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 314
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
+L A F +KEAAWAI+N T GGT EQI YL G I+ +I+ V L A
Sbjct: 315 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 374
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
+ NI + E +G+ + + ++EE GL+KIE LQRH+N +++ S ++E Y+
Sbjct: 375 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 427
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
++SN+ A L K I +I AG+ P+ V LG S + ++ +
Sbjct: 16 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 75
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
NIA G QT +++ GA+P + LL H I A W + NI VI
Sbjct: 76 TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 134
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
G I PL+ LL A Y++
Sbjct: 135 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 194
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
++ WAIS T G +E+I+ + ++G + IVT L+A+ NI+
Sbjct: 195 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 253
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
+ + D G + + L+ K N+Q+ + + +A
Sbjct: 254 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 295
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 279 bits (713), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/360 (44%), Positives = 217/360 (60%), Gaps = 14/360 (3%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T E KAVVD GA+P F+ LLASP I Q+VWALGNIA + FRDLV+ A
Sbjct: 76 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 135
Query: 61 LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
+ PLL L + ++ R TWTLSNLC K P P D V LPTL +L+H ND
Sbjct: 136 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 195
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
V++++CW +S L DG N+ I+ V++ GV P+LVKLLG ++T AL +GNI G
Sbjct: 196 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 254
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
QT +I+ GAL LL N KT+I+ A W +SNITAG ++QIQ V++ GL+ LV
Sbjct: 255 DEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 313
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
+L A F +KEAAWAI+N T GGT EQI YL G I+ +I+ V L A
Sbjct: 314 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 373
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
+ NI + E +G+ + + ++EE GL+KIE LQRH+N +++ S ++E Y+
Sbjct: 374 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 426
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
++SN+ A L K I +I AG+ P+ V LG S + ++ +
Sbjct: 15 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 74
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
NIA G QT +++ GA+P + LL H I A W + NI VI
Sbjct: 75 TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 133
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
G I PL+ LL A Y++
Sbjct: 134 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 193
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
++ WAIS T G +E+I+ + ++G + IVT L+A+ NI+
Sbjct: 194 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 252
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
+ + D G + + L+ K N+Q+ + + +A
Sbjct: 253 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 294
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 279 bits (713), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/360 (44%), Positives = 217/360 (60%), Gaps = 14/360 (3%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T E KAVVD GA+P F+ LLASP I Q+VWALGNIA + FRDLV+ A
Sbjct: 77 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 136
Query: 61 LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
+ PLL L + ++ R TWTLSNLC K P P D V LPTL +L+H ND
Sbjct: 137 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 196
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
V++++CW +S L DG N+ I+ V++ GV P+LVKLLG ++T AL +GNI G
Sbjct: 197 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 255
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
QT +I+ GAL LL N KT+I+ A W +SNITAG ++QIQ V++ GL+ LV
Sbjct: 256 DEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 314
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
+L A F +KEAAWAI+N T GGT EQI YL G I+ +I+ V L A
Sbjct: 315 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 374
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
+ NI + E +G+ + + ++EE GL+KIE LQRH+N +++ S ++E Y+
Sbjct: 375 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 427
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
++SN+ A L K I +I AG+ P+ V LG S + ++ +
Sbjct: 16 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 75
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
NIA G QT +++ GA+P + LL H I A W + NI VI
Sbjct: 76 TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 134
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
G I PL+ LL A Y++
Sbjct: 135 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 194
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
++ WAIS T G +E+I+ + ++G + IVT L+A+ NI+
Sbjct: 195 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 253
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
+ + D G + + L+ K N+Q+ + + +A
Sbjct: 254 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 295
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 279 bits (713), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/360 (44%), Positives = 217/360 (60%), Gaps = 14/360 (3%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T E KAVVD GA+P F+ LLASP I Q+VWALGNIA + FRDLV+ A
Sbjct: 103 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 162
Query: 61 LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
+ PLL L + ++ R TWTLSNLC K P P D V LPTL +L+H ND
Sbjct: 163 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 222
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
V++++CW +S L DG N+ I+ V++ GV P+LVKLLG ++T AL +GNI G
Sbjct: 223 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 281
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
QT +I+ GAL LL N KT+I+ A W +SNITAG ++QIQ V++ GL+ LV
Sbjct: 282 DEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 340
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
+L A F +KEAAWAI+N T GGT EQI YL G I+ +I+ V L A
Sbjct: 341 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 400
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
+ NI + E +G+ + + ++EE GL+KIE LQRH+N +++ S ++E Y+
Sbjct: 401 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 453
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
++SN+ A L K I +I AG+ P+ V LG S + ++ +
Sbjct: 42 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 101
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
NIA G QT +++ GA+P + LL H I A W + NI VI
Sbjct: 102 TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 160
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
G I PL+ LL A Y++
Sbjct: 161 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 220
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
++ WAIS T G +E+I+ + ++G + IVT L+A+ NI+
Sbjct: 221 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 279
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
+ + D G + + L+ K N+Q+ + + +A
Sbjct: 280 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 321
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 278 bits (712), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/360 (44%), Positives = 217/360 (60%), Gaps = 14/360 (3%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T E KAVVD GA+P F+ LLASP I Q+VWALGNIA + FRDLV+ A
Sbjct: 72 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 131
Query: 61 LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
+ PLL L + ++ R TWTLSNLC K P P D V LPTL +L+H ND
Sbjct: 132 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 191
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
V++++CW +S L DG N+ I+ V++ GV P+LVKLLG ++T AL +GNI G
Sbjct: 192 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 250
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
QT +I+ GAL LL N KT+I+ A W +SNITAG ++QIQ V++ GL+ LV
Sbjct: 251 DEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 309
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
+L A F +KEAAWAI+N T GGT EQI YL G I+ +I+ V L A
Sbjct: 310 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 369
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
+ NI + E +G+ + + ++EE GL+KIE LQRH+N +++ S ++E Y+
Sbjct: 370 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 422
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
++SN+ A L K I +I AG+ P+ V LG S + ++ +
Sbjct: 11 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 70
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
NIA G QT +++ GA+P + LL H I A W + NI VI
Sbjct: 71 TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 129
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
G I PL+ LL A Y++
Sbjct: 130 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 189
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
++ WAIS T G +E+I+ + ++G + IVT L+A+ NI+
Sbjct: 190 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 248
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
+ + D G + + L+ K N+Q+ + + +A
Sbjct: 249 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 290
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 278 bits (712), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 160/360 (44%), Positives = 217/360 (60%), Gaps = 14/360 (3%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T E KAVVD GA+P F+ LLASP I Q+VWALGNIA + FRDLV+ A
Sbjct: 72 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGA 131
Query: 61 LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
+ PLL L + ++ R TWTLSNLC K P P D V LPTL +L+H ND
Sbjct: 132 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 191
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
V++++CW +S L DG N+ I+ V++ GV P+LVKLLG ++T AL +GNI G
Sbjct: 192 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 250
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
QT +I+ GAL LL N KT+I+ A W +SNITAG ++QIQ V++ GL+ LV
Sbjct: 251 DEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 309
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
+L A F +KEAAWAI+N T GGT EQI YL G I+ +I+ V L A
Sbjct: 310 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 369
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
+ NI + E +G+ + + ++EE GL+KIE LQRH+N +++ S ++E Y+
Sbjct: 370 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 422
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
++SN+ A L K I +I AG+ P+ V LG S + ++ +
Sbjct: 11 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 70
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
NIA G QT +++ GA+P + LL H I A W + NI VI
Sbjct: 71 TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKH 129
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
G I PL+ LL A Y++
Sbjct: 130 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 189
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
++ WAIS T G +E+I+ + ++G + IVT L+A+ NI+
Sbjct: 190 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 248
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
+ + D G + + L+ K N+Q+ + + +A
Sbjct: 249 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 290
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 276 bits (706), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 159/361 (44%), Positives = 215/361 (59%), Gaps = 14/361 (3%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T E KAVVD GA+P F+ LLASP I Q+VWALGNIA FRDLV+ A
Sbjct: 146 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGA 205
Query: 61 LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
+ PLL L + ++ R TWTLSNLC K P P D V LPTL +L+H ND
Sbjct: 206 IDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 265
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
V++++CW +S L DG N+ I+ V++ GV P+LVKLLG ++T AL +GNI G
Sbjct: 266 EVLADSCWAISYLTDG-PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 324
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
QT +I+ GAL LL N KT+I+ A W +SNITAG ++QIQ V++ GL+ LV
Sbjct: 325 DEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 383
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
+L A F +K AAWAI+N T GGT EQI YL G I+ +I+ V L A
Sbjct: 384 GVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 443
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
+ NI + E +G+ + + ++EE GL+KIE LQRH+N +++ S ++E Y+
Sbjct: 444 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 496
Query: 356 C 356
Sbjct: 497 S 497
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 105/287 (36%), Gaps = 55/287 (19%)
Query: 110 VHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQS-VLTQALHTV 168
++SN+ A L K I +I AG+ P+ V LG S + ++ +
Sbjct: 85 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWAL 144
Query: 169 GNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDA 228
NIA G QT +++ GA+P + LL H I A W + NI VI
Sbjct: 145 TNIASGTSEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGAGSAFRDLVIKH 203
Query: 229 GLIGPLVNLLQN------AVFYIKK----------------------------------- 247
G I PL+ LL A Y++
Sbjct: 204 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 263
Query: 248 ------EAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILK 301
++ WAIS T G +E+I+ + ++G + IVT L+A+ NI+
Sbjct: 264 DPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 322
Query: 302 VGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSA 348
+ + D G + + L+ K N+Q+ + + +A
Sbjct: 323 GTDEQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITA 364
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 157/360 (43%), Positives = 214/360 (59%), Gaps = 14/360 (3%)
Query: 1 SIASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAA 60
+IAS T E KAVVD GA+P F+ LLASP I Q+VWALGNIA + FRDLV+ A
Sbjct: 78 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGA 137
Query: 61 LIPLLTQLNNHENLSMK----RIATWTLSNLCGGK-PRPIFDQVRPCLPTLAQLVHSNDE 115
+ PLL L + S+ R TWTLSNLC K P P D V LPTL +L+H +D
Sbjct: 138 VDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDP 197
Query: 116 HVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGD 175
V+++ CW +S L DG N+ I V++ GV P+LVKLLG ++T AL +GNI G
Sbjct: 198 EVLADTCWAISYLTDG-PNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGT 256
Query: 176 YSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLV 235
QT +I+ GAL LL N KT+I+ A W +SNITAG ++QIQ V++ GL+ LV
Sbjct: 257 DEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 315
Query: 236 NLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKA 295
++L A F +KEA WA++N T GGT EQI YL G I+ +I+ V L A
Sbjct: 316 SVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDA 375
Query: 296 LENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYW 355
+ NI + E +G+ + + ++EE GL+KIE LQ H+N +++ S ++E Y+
Sbjct: 376 ISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLIEKYF 428
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 182 IINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
II G +P + L + I+ + W ++NI +G EQ +AV+D G I ++LL +
Sbjct: 47 IIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP 106
Query: 242 VFYIKKEAAWAISNATFGGT 261
+I ++A WA+ N G+
Sbjct: 107 HAHISEQAVWALGNIAGDGS 126
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 144 bits (364), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 98/251 (39%), Positives = 137/251 (54%), Gaps = 18/251 (7%)
Query: 103 LPTLAQLVHSNDEHVMSNACWGLS-LLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVL 161
LP + Q ++S+D +A S +L DG N++IQAVI+AG P LV+LL P++ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG--NEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 162 TQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ 221
+AL + NIA G Q +I+ GALP L+ LL + I A W +SNI +G EQ
Sbjct: 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ 130
Query: 222 IQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXX 281
IQAVIDAG + LV LL + I +EA WA+SN GG +EQI+ + G +
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLL 189
Query: 282 XXXXXQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEEAKGLEKIENLQRHDNY 341
QI+ L AL NI G N+ Q V+EA LEK+E LQ H+N
Sbjct: 190 SSPNEQILQEALWALSNIASGG-------------NEQKQAVKEAGALEKLEQLQSHENE 236
Query: 342 EIHEKSAKILE 352
+I +++ + LE
Sbjct: 237 KIQKEAQEALE 247
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 106/185 (57%), Gaps = 3/185 (1%)
Query: 8 EDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQ 67
E +AV+D GA+P V+LL+SP++ I +++WAL NIA+ V+ +A +P L Q
Sbjct: 45 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQ 103
Query: 68 LNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRP-CLPTLAQLVHSNDEHVMSNACWGLS 126
L + N + + A W LSN+ G I + LP L QL+ S +E ++ A W LS
Sbjct: 104 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163
Query: 127 LLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCG 186
+ GG N++IQAVI+AG P LV+LL P++ +L +AL + NIA G Q + G
Sbjct: 164 NIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG 222
Query: 187 ALPYL 191
AL L
Sbjct: 223 ALEKL 227
Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 109/197 (55%), Gaps = 3/197 (1%)
Query: 58 EAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRP-CLPTLAQLVHSNDEH 116
+A +P L QL + N + + A W LSN+ G I + LP L QL+ S +E
Sbjct: 52 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 111
Query: 117 VMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDY 176
++ A W LS + GG N++IQAVI+AG P LV+LL P++ +L +AL + NIA G
Sbjct: 112 ILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170
Query: 177 SQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVN 236
Q +I+ GALP L+ LL + I A W +SNI +G EQ QAV +AG + L
Sbjct: 171 EQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ 229
Query: 237 LLQNAVFYIKKEAAWAI 253
L + I+KEA A+
Sbjct: 230 LQSHENEKIQKEAQEAL 246
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 92/164 (56%), Gaps = 3/164 (1%)
Query: 2 IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL 61
IAS E +AV+D GA+P V+LL+SP++ I +++WAL NIA+ V+ +A
Sbjct: 81 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-DAGA 139
Query: 62 IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRP-CLPTLAQLVHSNDEHVMSN 120
+P L QL + N + + A W LSN+ G I + LP L QL+ S +E ++
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 199
Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQA 164
A W LS + GG N++ QAV EAG +L +L H ++ + +A
Sbjct: 200 ALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSHENEKIQKEA 242
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 112/197 (56%), Gaps = 3/197 (1%)
Query: 103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLT 162
LP + Q ++S D+ + +A LS + GG N++IQAVI+AG P LV+LL P++ +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 163 QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQI 222
+AL + NIA G Q +I+ GALP L+ LL + I A W +SNI +G EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131
Query: 223 QAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXX 282
QAVIDAG + LV LL + I +EA WA+SN GG +EQ + ++ G ++
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190
Query: 283 XXXXQIVTVCLKALENI 299
+I +ALE +
Sbjct: 191 HENEKIQKEAQEALEKL 207
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 106/207 (51%), Gaps = 15/207 (7%)
Query: 146 CPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKN 205
P++V+ L P Q L AL + IA G Q +I+ GALP L+ LL + I
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQ 72
Query: 206 YACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQI 265
A W +SNI +G EQIQAVIDAG + LV LL + I +EA WA+SN GG +EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 266 KYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEE 325
+ + G + QI+ L AL NI G N+ Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 326 AKGLEKIENLQRHDNYEIHEKSAKILE 352
A LEK+E LQ H+N +I +++ + LE
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALE 205
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 105/191 (54%), Gaps = 4/191 (2%)
Query: 64 LLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRP-CLPTLAQLVHSNDEHVMSNAC 122
++ QLN+ + ++ A LS + G I + LP L QL+ S +E ++ A
Sbjct: 17 MVQQLNSPDQQELQS-ALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75
Query: 123 WGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYI 182
W LS + GG N++IQAVI+AG P LV+LL P++ +L +AL + NIA G Q +
Sbjct: 76 WALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134
Query: 183 INCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAV 242
I+ GALP L+ LL + I A W +SNI +G EQ QAV +AG + L L +
Sbjct: 135 IDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 243 FYIKKEAAWAI 253
I+KEA A+
Sbjct: 194 EKIQKEAQEAL 204
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 92/164 (56%), Gaps = 3/164 (1%)
Query: 2 IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL 61
IAS E +AV+D GA+P V+LL+SP++ I +++WAL NIA+ V+ +A
Sbjct: 39 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-DAGA 97
Query: 62 IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRP-CLPTLAQLVHSNDEHVMSN 120
+P L QL + N + + A W LSN+ G I + LP L QL+ S +E ++
Sbjct: 98 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 157
Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQA 164
A W LS + GG N++ QAV EAG +L +L H ++ + +A
Sbjct: 158 ALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSHENEKIQKEA 200
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 2/128 (1%)
Query: 2 IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL 61
IAS E +AV+D GA+P V+LL+SP++ I +++WAL NIA+ V+ +A
Sbjct: 81 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-DAGA 139
Query: 62 IPLLTQLNNHENLSMKRIATWTLSNLC-GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
+P L QL + N + + A W LSN+ GG + + L L QL +E +
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 199
Query: 121 ACWGLSLL 128
A L L
Sbjct: 200 AQEALEKL 207
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 110/197 (55%), Gaps = 3/197 (1%)
Query: 103 LPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLT 162
LP + Q ++S D+ + +A LS + GG N++IQAVI+AG P LV+LL P++ +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 163 QALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQI 222
+AL + NIA G Q +I+ GALP L+ LL + I A W +SNI +G EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131
Query: 223 QAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXX 282
QAVIDAG + LV LL + I +EA WA+SN GG +EQ + ++ G
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGAEPALEQLQS 190
Query: 283 XXXXQIVTVCLKALENI 299
+I +ALE I
Sbjct: 191 SPNEKIQKEAQEALEKI 207
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 88/152 (57%), Gaps = 2/152 (1%)
Query: 102 CLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVL 161
LP L QL+ S +E ++ A W LS + GG N++IQAVI+AG P LV+LL P++ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 162 TQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ 221
+AL + NIA G Q +I+ GALP L+ LL + I A W +SNI +G EQ
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ 172
Query: 222 IQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAI 253
QAV +AG L L + I+KEA A+
Sbjct: 173 KQAVKEAGAEPALEQLQSSPNEKIQKEAQEAL 204
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 94/171 (54%), Gaps = 3/171 (1%)
Query: 2 IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL 61
IAS E +AV+D GA+P V+LL+SP++ I +++WAL NIA+ V+ +A
Sbjct: 39 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-DAGA 97
Query: 62 IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRP-CLPTLAQLVHSNDEHVMSN 120
+P L QL + N + + A W LSN+ G I + LP L QL+ S +E ++
Sbjct: 98 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 157
Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNI 171
A W LS + GG N++ QAV EAG P L +L P++ + +A + I
Sbjct: 158 ALWALSNIASGG-NEQKQAVKEAGAEPALEQLQSSPNEKIQKEAQEALEKI 207
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 111/198 (56%), Gaps = 5/198 (2%)
Query: 103 LPTLAQLVHSNDEHVMSNACWGLS-LLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVL 161
LP + Q ++S+D +A S +L DG N++IQAVI+AG P LV+LL P++ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG--NEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 162 TQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ 221
+AL + NIA G Q +I+ GALP L+ LL + I A W +SNI +G EQ
Sbjct: 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ 130
Query: 222 IQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXX 281
IQAVIDAG + LV LL + I +EA WA+SN GG +EQ + ++ G ++
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQ 189
Query: 282 XXXXXQIVTVCLKALENI 299
+I +ALE +
Sbjct: 190 SHENEKIQKEAQEALEKL 207
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 105/193 (54%), Gaps = 3/193 (1%)
Query: 62 IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRP-CLPTLAQLVHSNDEHVMSN 120
+P +TQ N +++ + AT S + I + LP L QL+ S +E ++
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTL 180
A W LS + GG N++IQAVI+AG P LV+LL P++ +L +AL + NIA G Q
Sbjct: 74 ALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 181 YIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQN 240
+I+ GALP L+ LL + I A W +SNI +G EQ QAV +AG + L L +
Sbjct: 133 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 191
Query: 241 AVFYIKKEAAWAI 253
I+KEA A+
Sbjct: 192 ENEKIQKEAQEAL 204
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 98/207 (47%), Gaps = 15/207 (7%)
Query: 146 CPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDNHKTSIKN 205
P++ + L A I Q +I+ GALP L+ LL + I
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQ 72
Query: 206 YACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAISNATFGGTHEQI 265
A W +SNI +G EQIQAVIDAG + LV LL + I +EA WA+SN GG +EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 266 KYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILKVGEAEKNTDTDIGDVNQYAQLVEE 325
+ + G + QI+ L AL NI G N+ Q V+E
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKE 178
Query: 326 AKGLEKIENLQRHDNYEIHEKSAKILE 352
A LEK+E LQ H+N +I +++ + LE
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALE 205
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 89/158 (56%), Gaps = 3/158 (1%)
Query: 8 EDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQ 67
E +AV+D GA+P V+LL+SP++ I +++WAL NIA+ V+ +A +P L Q
Sbjct: 45 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQ 103
Query: 68 LNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRP-CLPTLAQLVHSNDEHVMSNACWGLS 126
L + N + + A W LSN+ G I + LP L QL+ S +E ++ A W LS
Sbjct: 104 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163
Query: 127 LLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQA 164
+ GG N++ QAV EAG +L +L H ++ + +A
Sbjct: 164 NIASGG-NEQKQAVKEAGALEKLEQLQSHENEKIQKEA 200
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 66/128 (51%), Gaps = 2/128 (1%)
Query: 2 IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL 61
IAS E +AV+D GA+P V+LL+SP++ I +++WAL NIA+ V+ +A
Sbjct: 81 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-DAGA 139
Query: 62 IPLLTQLNNHENLSMKRIATWTLSNLC-GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSN 120
+P L QL + N + + A W LSN+ GG + + L L QL +E +
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 199
Query: 121 ACWGLSLL 128
A L L
Sbjct: 200 AQEALEKL 207
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 8/240 (3%)
Query: 61 LIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPC-LPTLAQLVHSNDEHVMS 119
L+ LLT ++ ++ A L+ + G I V + L +L+ S D V
Sbjct: 7 LVKLLTSTDSE----TQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQK 62
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQT 179
A L+ + G ++ I+A+++AG LVKLL V +A + NIA G
Sbjct: 63 EAARALANIA-SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 121
Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQ 239
I++ G + L+ LL + ++ A ++NI +G E I+A++DAG + LV LL
Sbjct: 122 KAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 180
Query: 240 NAVFYIKKEAAWAISNATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENI 299
+ ++KEAA A++N G T IK + G ++ ++ +ALENI
Sbjct: 181 STDSEVQKEAARALANIASGPTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 4/208 (1%)
Query: 11 KAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNN 70
KA+VD G V + VKLL S +++ ++ AL NIA+ P + +A + +L +L
Sbjct: 38 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLT 96
Query: 71 HENLSMKRIATWTLSNLCGGKPRPIFDQVRP-CLPTLAQLVHSNDEHVMSNACWGLSLLC 129
+ +++ A L+N+ G I V + L +L+ S D V A L+ +
Sbjct: 97 STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156
Query: 130 DGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALP 189
G ++ I+A+++AG LVKLL V +A + NIA G S I++ G +
Sbjct: 157 -SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVE 215
Query: 190 YLLGLLIDNHKTSIKNYACWIISNITAG 217
L LL + ++ A + NI +G
Sbjct: 216 VLQKLLTSTD-SEVQKEAQRALENIKSG 242
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 81/174 (46%), Gaps = 3/174 (1%)
Query: 2 IASKTLEDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAAL 61
IAS E KA+VD G V + VKLL S +++ ++ AL NIA+ P + +A
Sbjct: 71 IASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGG 129
Query: 62 IPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRP-CLPTLAQLVHSNDEHVMSN 120
+ +L +L + +++ A L+N+ G I V + L +L+ S D V
Sbjct: 130 VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKE 189
Query: 121 ACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG 174
A L+ + G I+A+++AG L KLL V +A + NI G
Sbjct: 190 AARALANIA-SGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 71/163 (43%), Gaps = 14/163 (8%)
Query: 195 LIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254
L+ + + + A ++ I +G I+A++DAG + LV LL + ++KEAA A++
Sbjct: 10 LLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 69
Query: 255 NATFGGTHEQIKYLEREGCIKXXXXXXXXXXXQIVTVCLKALENILKVGEAEKNTDTDIG 314
N G E IK + G ++ ++ +AL NI
Sbjct: 70 N-IASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA-------------S 115
Query: 315 DVNQYAQLVEEAKGLEKIENLQRHDNYEIHEKSAKILETYWCG 357
++ + + +A G+E + L + E+ +++A+ L G
Sbjct: 116 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 158
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 89 GGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQA-VIEAGVCP 147
GG P P + Q P LP + ++ + V SNA L LC +ND+++ V + P
Sbjct: 38 GGPPPPNWRQ--PELPEVIAMLGFRLDAVKSNAAAYLQHLC--YRNDKVKTDVRKLKGIP 93
Query: 148 RLVKLLGHPSQSVLTQALHTVGNIARG-DYSQTLYIINCGALPYLLGLL 195
LV LL HP + V A + NI+ G D + I NC +P L+ LL
Sbjct: 94 VLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLL 142
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN 198
A+ ++G P LVK+LG P SVL A+ T+ N+ + + G L ++ LL
Sbjct: 93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL--- 149
Query: 199 HKTSIKNYACWI--ISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254
+KT++K A + + GN+E ++ +G LVN+++ Y ++ W S
Sbjct: 150 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT---YTYEKLLWTTS 204
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 87/236 (36%), Gaps = 17/236 (7%)
Query: 12 AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH 71
A+ G +P VK+L SP D + ++ L N+ + V L ++ LN
Sbjct: 93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK- 151
Query: 72 ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSL---- 127
N+ I T L L G + P LV+ + W S
Sbjct: 152 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQ--ALVNIMRTYTYEKLLWTTSRVLKV 209
Query: 128 --LCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINC 185
+C K A++EAG L L PSQ ++ L T+ N++ Q
Sbjct: 210 LSVCSSNK----PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 265
Query: 186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
G L LLG + ++ A I+SN+T N + V G I LV + A
Sbjct: 266 GTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 317
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 15/202 (7%)
Query: 9 DKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQL 68
+K A+V+ G + L PS + +W L N++ + + G L+ L QL
Sbjct: 216 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE----GMEGLLGTLVQL 271
Query: 69 NNHENLSMKRIATWTLSNL-CGG-KPRPIFDQVRPCLPTLAQLVHSND-EHVMSNACWGL 125
+++++ A LSNL C K + + QV + ++ + D E + A L
Sbjct: 272 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331
Query: 126 SLLCDGGKNDEI--QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVG---NIARGDYSQTL 180
L + E+ AV P +VKLL PS L +A TVG N+A +
Sbjct: 332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA--TVGLIRNLALCPANHA- 388
Query: 181 YIINCGALPYLLGLLIDNHKTS 202
+ GA+P L+ LL+ H+ +
Sbjct: 389 PLREQGAIPRLVQLLVRAHQDT 410
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN 198
A+ ++G P LVK+LG P SVL A+ T+ N+ + + G L ++ LL
Sbjct: 94 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL--- 150
Query: 199 HKTSIKNYA----CWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254
+KT++K A C I + GN+E ++ +G LVN+++ Y ++ W S
Sbjct: 151 NKTNVKFLAITTDCLQI--LAYGNQESKLIILASGGPQALVNIMRT---YTYEKLLWTTS 205
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 87/236 (36%), Gaps = 17/236 (7%)
Query: 12 AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH 71
A+ G +P VK+L SP D + ++ L N+ + V L ++ LN
Sbjct: 94 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK- 152
Query: 72 ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSL---- 127
N+ I T L L G + P LV+ + W S
Sbjct: 153 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQ--ALVNIMRTYTYEKLLWTTSRVLKV 210
Query: 128 --LCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINC 185
+C K A++EAG L L PSQ ++ L T+ N++ Q
Sbjct: 211 LSVCSSNK----PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 266
Query: 186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
G L LLG + ++ A I+SN+T N + V G I LV + A
Sbjct: 267 GTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 318
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 15/202 (7%)
Query: 9 DKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQL 68
+K A+V+ G + L PS + +W L N++ + + G L+ L QL
Sbjct: 217 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE----GMEGLLGTLVQL 272
Query: 69 NNHENLSMKRIATWTLSNL-CGG-KPRPIFDQVRPCLPTLAQLVHSND-EHVMSNACWGL 125
+++++ A LSNL C K + + QV + ++ + D E + A L
Sbjct: 273 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 332
Query: 126 SLLCDGGKNDEI--QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVG---NIARGDYSQTL 180
L + E+ AV P +VKLL PS L +A TVG N+A +
Sbjct: 333 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA--TVGLIRNLALCPANHA- 389
Query: 181 YIINCGALPYLLGLLIDNHKTS 202
+ GA+P L+ LL+ H+ +
Sbjct: 390 PLREQGAIPRLVQLLVRAHQDT 411
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN 198
A+ ++G P LVK+LG P SVL A+ T+ N+ + + G L ++ LL
Sbjct: 99 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL--- 155
Query: 199 HKTSIKNYACWI--ISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254
+KT++K A + + GN+E ++ +G LVN+++ Y ++ W S
Sbjct: 156 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT---YTYEKLLWTTS 210
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 87/236 (36%), Gaps = 17/236 (7%)
Query: 12 AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH 71
A+ G +P VK+L SP D + ++ L N+ + V L ++ LN
Sbjct: 99 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK- 157
Query: 72 ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSL---- 127
N+ I T L L G + P LV+ + W S
Sbjct: 158 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQ--ALVNIMRTYTYEKLLWTTSRVLKV 215
Query: 128 --LCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINC 185
+C K A++EAG L L PSQ ++ L T+ N++ Q
Sbjct: 216 LSVCSSNK----PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 271
Query: 186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
G L LLG + ++ A I+SN+T N + V G I LV + A
Sbjct: 272 GTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 323
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 15/202 (7%)
Query: 9 DKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQL 68
+K A+V+ G + L PS + +W L N++ + + G L+ L QL
Sbjct: 222 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE----GMEGLLGTLVQL 277
Query: 69 NNHENLSMKRIATWTLSNL-CGG-KPRPIFDQVRPCLPTLAQLVHSND-EHVMSNACWGL 125
+++++ A LSNL C K + + QV + ++ + D E + A L
Sbjct: 278 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 337
Query: 126 SLLCDGGKNDEI--QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVG---NIARGDYSQTL 180
L + E+ AV P +VKLL PS L +A TVG N+A +
Sbjct: 338 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA--TVGLIRNLALCPANHA- 394
Query: 181 YIINCGALPYLLGLLIDNHKTS 202
+ GA+P L+ LL+ H+ +
Sbjct: 395 PLREQGAIPRLVQLLVRAHQDT 416
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN 198
A+ ++G P LVK+LG P SVL A+ T+ N+ + + G L ++ LL
Sbjct: 97 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL--- 153
Query: 199 HKTSIKNYACWI--ISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254
+KT++K A + + GN+E ++ +G LVN+++ Y ++ W S
Sbjct: 154 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT---YTYEKLLWTTS 208
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 87/236 (36%), Gaps = 17/236 (7%)
Query: 12 AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH 71
A+ G +P VK+L SP D + ++ L N+ + V L ++ LN
Sbjct: 97 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK- 155
Query: 72 ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSL---- 127
N+ I T L L G + P LV+ + W S
Sbjct: 156 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQ--ALVNIMRTYTYEKLLWTTSRVLKV 213
Query: 128 --LCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINC 185
+C K A++EAG L L PSQ ++ L T+ N++ Q
Sbjct: 214 LSVCSSNK----PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 269
Query: 186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
G L LLG + ++ A I+SN+T N + V G I LV + A
Sbjct: 270 GTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 321
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 15/202 (7%)
Query: 9 DKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQL 68
+K A+V+ G + L PS + +W L N++ + + G L+ L QL
Sbjct: 220 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE----GMEGLLGTLVQL 275
Query: 69 NNHENLSMKRIATWTLSNL-CGG-KPRPIFDQVRPCLPTLAQLVHSND-EHVMSNACWGL 125
+++++ A LSNL C K + + QV + ++ + D E + A L
Sbjct: 276 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 335
Query: 126 SLLCDGGKNDEI--QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVG---NIARGDYSQTL 180
L + E+ AV P +VKLL PS L +A TVG N+A +
Sbjct: 336 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA--TVGLIRNLALCPANHA- 392
Query: 181 YIINCGALPYLLGLLIDNHKTS 202
+ GA+P L+ LL+ H+ +
Sbjct: 393 PLREQGAIPRLVQLLVRAHQDT 414
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN 198
A+ ++G P LVK+LG P SVL A+ T+ N+ + + G L ++ LL
Sbjct: 100 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL--- 156
Query: 199 HKTSIKNYACWI--ISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254
+KT++K A + + GN+E ++ +G LVN+++ Y ++ W S
Sbjct: 157 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT---YTYEKLLWTTS 211
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 87/236 (36%), Gaps = 17/236 (7%)
Query: 12 AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH 71
A+ G +P VK+L SP D + ++ L N+ + V L ++ LN
Sbjct: 100 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK- 158
Query: 72 ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSL---- 127
N+ I T L L G + P LV+ + W S
Sbjct: 159 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQ--ALVNIMRTYTYEKLLWTTSRVLKV 216
Query: 128 --LCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINC 185
+C K A++EAG L L PSQ ++ L T+ N++ Q
Sbjct: 217 LSVCSSNK----PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 272
Query: 186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
G L LLG + ++ A I+SN+T N + V G I LV + A
Sbjct: 273 GTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 324
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 15/202 (7%)
Query: 9 DKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQL 68
+K A+V+ G + L PS + +W L N++ + + G L+ L QL
Sbjct: 223 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE----GMEGLLGTLVQL 278
Query: 69 NNHENLSMKRIATWTLSNL-CGG-KPRPIFDQVRPCLPTLAQLVHSND-EHVMSNACWGL 125
+++++ A LSNL C K + + QV + ++ + D E + A L
Sbjct: 279 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 338
Query: 126 SLLCDGGKNDEI--QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVG---NIARGDYSQTL 180
L + E+ AV P +VKLL PS L +A TVG N+A +
Sbjct: 339 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA--TVGLIRNLALCPANHA- 395
Query: 181 YIINCGALPYLLGLLIDNHKTS 202
+ GA+P L+ LL+ H+ +
Sbjct: 396 PLREQGAIPRLVQLLVRAHQDT 417
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN 198
A+ ++G P LVK+LG P SVL A+ T+ N+ + + G L ++ LL
Sbjct: 98 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL--- 154
Query: 199 HKTSIKNYACWI--ISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254
+KT++K A + + GN+E ++ +G LVN+++ Y ++ W S
Sbjct: 155 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT---YTYEKLLWTTS 209
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 87/236 (36%), Gaps = 17/236 (7%)
Query: 12 AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH 71
A+ G +P VK+L SP D + ++ L N+ + V L ++ LN
Sbjct: 98 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK- 156
Query: 72 ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSL---- 127
N+ I T L L G + P LV+ + W S
Sbjct: 157 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQ--ALVNIMRTYTYEKLLWTTSRVLKV 214
Query: 128 --LCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINC 185
+C K A++EAG L L PSQ ++ L T+ N++ Q
Sbjct: 215 LSVCSSNK----PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 270
Query: 186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
G L LLG + ++ A I+SN+T N + V G I LV + A
Sbjct: 271 GTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 322
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 15/202 (7%)
Query: 9 DKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQL 68
+K A+V+ G + L PS + +W L N++ + + G L+ L QL
Sbjct: 221 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE----GMEGLLGTLVQL 276
Query: 69 NNHENLSMKRIATWTLSNL-CGG-KPRPIFDQVRPCLPTLAQLVHSND-EHVMSNACWGL 125
+++++ A LSNL C K + + QV + ++ + D E + A L
Sbjct: 277 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 336
Query: 126 SLLCDGGKNDEI--QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVG---NIARGDYSQTL 180
L + E+ AV P +VKLL PS L +A TVG N+A +
Sbjct: 337 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA--TVGLIRNLALCPANHA- 393
Query: 181 YIINCGALPYLLGLLIDNHKTS 202
+ GA+P L+ LL+ H+ +
Sbjct: 394 PLREQGAIPRLVQLLVRAHQDT 415
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN 198
A+ ++G P LVK+LG P SVL A+ T+ N+ + + G L ++ LL
Sbjct: 81 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL--- 137
Query: 199 HKTSIKNYACWI--ISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254
+KT++K A + + GN+E ++ +G LVN+++ Y ++ W S
Sbjct: 138 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT---YTYEKLLWTTS 192
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 87/236 (36%), Gaps = 17/236 (7%)
Query: 12 AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH 71
A+ G +P VK+L SP D + ++ L N+ + V L ++ LN
Sbjct: 81 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK- 139
Query: 72 ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSL---- 127
N+ I T L L G + P LV+ + W S
Sbjct: 140 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQ--ALVNIMRTYTYEKLLWTTSRVLKV 197
Query: 128 --LCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINC 185
+C K A++EAG L L PSQ ++ L T+ N++ Q
Sbjct: 198 LSVCSSNK----PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 253
Query: 186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
G L LLG + ++ A I+SN+T N + V G I LV + A
Sbjct: 254 GTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 305
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 15/202 (7%)
Query: 9 DKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQL 68
+K A+V+ G + L PS + +W L N++ + + G L+ L QL
Sbjct: 204 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE----GMEGLLGTLVQL 259
Query: 69 NNHENLSMKRIATWTLSNL-CGG-KPRPIFDQVRPCLPTLAQLVHSND-EHVMSNACWGL 125
+++++ A LSNL C K + + QV + ++ + D E + A L
Sbjct: 260 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 319
Query: 126 SLLCDGGKNDEI--QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVG---NIARGDYSQTL 180
L + E+ AV P +VKLL PS L +A TVG N+A +
Sbjct: 320 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA--TVGLIRNLALCPANHA- 376
Query: 181 YIINCGALPYLLGLLIDNHKTS 202
+ GA+P L+ LL+ H+ +
Sbjct: 377 PLREQGAIPRLVQLLVRAHQDT 398
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN 198
A+ ++G P LVK+LG P SVL A+ T+ N+ + + G L ++ LL
Sbjct: 85 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL--- 141
Query: 199 HKTSIKNYACWI--ISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254
+KT++K A + + GN+E ++ +G LVN+++ Y ++ W S
Sbjct: 142 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT---YTYEKLLWTTS 196
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 87/236 (36%), Gaps = 17/236 (7%)
Query: 12 AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH 71
A+ G +P VK+L SP D + ++ L N+ + V L ++ LN
Sbjct: 85 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK- 143
Query: 72 ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSL---- 127
N+ I T L L G + P LV+ + W S
Sbjct: 144 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQ--ALVNIMRTYTYEKLLWTTSRVLKV 201
Query: 128 --LCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINC 185
+C K A++EAG L L PSQ ++ L T+ N++ Q
Sbjct: 202 LSVCSSNK----PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 257
Query: 186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
G L LLG + ++ A I+SN+T N + V G I LV + A
Sbjct: 258 GTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 309
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 15/202 (7%)
Query: 9 DKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQL 68
+K A+V+ G + L PS + +W L N++ + + G L+ L QL
Sbjct: 208 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE----GMEGLLGTLVQL 263
Query: 69 NNHENLSMKRIATWTLSNL-CGG-KPRPIFDQVRPCLPTLAQLVHSND-EHVMSNACWGL 125
+++++ A LSNL C K + + QV + ++ + D E + A L
Sbjct: 264 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 323
Query: 126 SLLCDGGKNDEI--QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVG---NIARGDYSQTL 180
L + E+ AV P +VKLL PS L +A TVG N+A +
Sbjct: 324 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA--TVGLIRNLALCPANHA- 380
Query: 181 YIINCGALPYLLGLLIDNHKTS 202
+ GA+P L+ LL+ H+ +
Sbjct: 381 PLREQGAIPRLVQLLVRAHQDT 402
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN 198
A+ ++G P LVK+LG P SVL A+ T+ N+ + + G L ++ LL
Sbjct: 94 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL--- 150
Query: 199 HKTSIKNYACWI--ISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254
+KT++K A + + GN+E ++ +G LVN+++ Y ++ W S
Sbjct: 151 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT---YTYEKLLWTTS 205
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 87/236 (36%), Gaps = 17/236 (7%)
Query: 12 AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH 71
A+ G +P VK+L SP D + ++ L N+ + V L ++ LN
Sbjct: 94 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK- 152
Query: 72 ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSL---- 127
N+ I T L L G + P LV+ + W S
Sbjct: 153 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQ--ALVNIMRTYTYEKLLWTTSRVLKV 210
Query: 128 --LCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINC 185
+C K A++EAG L L PSQ ++ L T+ N++ Q
Sbjct: 211 LSVCSSNK----PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 266
Query: 186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
G L LLG + ++ A I+SN+T N + V G I LV + A
Sbjct: 267 GTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 318
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 15/202 (7%)
Query: 9 DKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQL 68
+K A+V+ G + L PS + +W L N++ + + G L+ L QL
Sbjct: 217 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE----GMEGLLGTLVQL 272
Query: 69 NNHENLSMKRIATWTLSNL-CGG-KPRPIFDQVRPCLPTLAQLVHSND-EHVMSNACWGL 125
+++++ A LSNL C K + + QV + ++ + D E + A L
Sbjct: 273 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 332
Query: 126 SLLCDGGKNDEI--QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVG---NIARGDYSQTL 180
L + E+ AV P +VKLL PS L +A TVG N+A +
Sbjct: 333 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA--TVGLIRNLALCPANHA- 389
Query: 181 YIINCGALPYLLGLLIDNHKTS 202
+ GA+P L+ LL+ H+ +
Sbjct: 390 PLREQGAIPRLVQLLVRAHQDT 411
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN 198
A+ ++G P LVK+LG P SVL A+ T+ N+ + + G L ++ LL
Sbjct: 83 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL--- 139
Query: 199 HKTSIKNYACWI--ISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254
+KT++K A + + GN+E ++ +G LVN+++ Y ++ W S
Sbjct: 140 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT---YTYEKLLWTTS 194
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 87/236 (36%), Gaps = 17/236 (7%)
Query: 12 AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH 71
A+ G +P VK+L SP D + ++ L N+ + V L ++ LN
Sbjct: 83 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK- 141
Query: 72 ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSL---- 127
N+ I T L L G + P LV+ + W S
Sbjct: 142 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQ--ALVNIMRTYTYEKLLWTTSRVLKV 199
Query: 128 --LCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINC 185
+C K A++EAG L L PSQ ++ L T+ N++ Q
Sbjct: 200 LSVCSSNK----PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 255
Query: 186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
G L LLG + ++ A I+SN+T N + V G I LV + A
Sbjct: 256 GTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 307
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 15/202 (7%)
Query: 9 DKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQL 68
+K A+V+ G + L PS + +W L N++ + + G L+ L QL
Sbjct: 206 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE----GMEGLLGTLVQL 261
Query: 69 NNHENLSMKRIATWTLSNL-CGG-KPRPIFDQVRPCLPTLAQLVHSND-EHVMSNACWGL 125
+++++ A LSNL C K + + QV + ++ + D E + A L
Sbjct: 262 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 321
Query: 126 SLLCDGGKNDEI--QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVG---NIARGDYSQTL 180
L + E+ AV P +VKLL PS L +A TVG N+A +
Sbjct: 322 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA--TVGLIRNLALCPANHA- 378
Query: 181 YIINCGALPYLLGLLIDNHKTS 202
+ GA+P L+ LL+ H+ +
Sbjct: 379 PLREQGAIPRLVQLLVRAHQDT 400
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN 198
A+ ++G P LVK+LG P SVL A+ T+ N+ + + G L ++ LL
Sbjct: 98 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL--- 154
Query: 199 HKTSIKNYACWI--ISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254
+KT++K A + + GN+E ++ +G LVN+++ Y ++ W S
Sbjct: 155 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT---YTYEKLLWTTS 209
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 87/236 (36%), Gaps = 17/236 (7%)
Query: 12 AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH 71
A+ G +P VK+L SP D + ++ L N+ + V L ++ LN
Sbjct: 98 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK- 156
Query: 72 ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSL---- 127
N+ I T L L G + P LV+ + W S
Sbjct: 157 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQ--ALVNIMRTYTYEKLLWTTSRVLKV 214
Query: 128 --LCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINC 185
+C K A++EAG L L PSQ ++ L T+ N++ Q
Sbjct: 215 LSVCSSNK----PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 270
Query: 186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
G L LLG + ++ A I+SN+T N + V G I LV + A
Sbjct: 271 GTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 322
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 15/202 (7%)
Query: 9 DKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQL 68
+K A+V+ G + L PS + +W L N++ + + G L+ L QL
Sbjct: 221 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE----GMEGLLGTLVQL 276
Query: 69 NNHENLSMKRIATWTLSNL-CGG-KPRPIFDQVRPCLPTLAQLVHSND-EHVMSNACWGL 125
+++++ A LSNL C K + + QV + ++ + D E + A L
Sbjct: 277 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 336
Query: 126 SLLCDGGKNDEI--QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVG---NIARGDYSQTL 180
L + E+ AV P +VKLL PS L +A TVG N+A +
Sbjct: 337 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA--TVGLIRNLALCPANHA- 393
Query: 181 YIINCGALPYLLGLLIDNHKTS 202
+ GA+P L+ LL+ H+ +
Sbjct: 394 PLREQGAIPRLVQLLVRAHQDT 415
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN 198
A+ ++G P LVK+LG P SVL A+ T+ N+ + + G L ++ LL
Sbjct: 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL--- 152
Query: 199 HKTSIKNYACWI--ISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254
+KT++K A + + GN+E ++ +G LVN+++ Y ++ W S
Sbjct: 153 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT---YTYEKLLWTTS 207
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 87/236 (36%), Gaps = 17/236 (7%)
Query: 12 AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH 71
A+ G +P VK+L SP D + ++ L N+ + V L ++ LN
Sbjct: 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK- 154
Query: 72 ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSL---- 127
N+ I T L L G + P LV+ + W S
Sbjct: 155 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQ--ALVNIMRTYTYEKLLWTTSRVLKV 212
Query: 128 --LCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINC 185
+C K A++EAG L L PSQ ++ L T+ N++ Q
Sbjct: 213 LSVCSSNK----PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 268
Query: 186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
G L LLG + ++ A I+SN+T N + V G I LV + A
Sbjct: 269 GTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 320
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 15/202 (7%)
Query: 9 DKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQL 68
+K A+V+ G + L PS + +W L N++ + + G L+ L QL
Sbjct: 219 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE----GMEGLLGTLVQL 274
Query: 69 NNHENLSMKRIATWTLSNL-CGG-KPRPIFDQVRPCLPTLAQLVHSND-EHVMSNACWGL 125
+++++ A LSNL C K + + QV + ++ + D E + A L
Sbjct: 275 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334
Query: 126 SLLCDGGKNDEI--QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVG---NIARGDYSQTL 180
L + E+ AV P +VKLL PS L +A TVG N+A +
Sbjct: 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA--TVGLIRNLALCPANHA- 391
Query: 181 YIINCGALPYLLGLLIDNHKTS 202
+ GA+P L+ LL+ H+ +
Sbjct: 392 PLREQGAIPRLVQLLVRAHQDT 413
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN 198
A+ ++G P LVK+LG P SVL A+ T+ N+ + + G L ++ LL
Sbjct: 81 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL--- 137
Query: 199 HKTSIKNYA----CWIISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254
+KT++K A C I + GN+E ++ +G LVN+++ Y ++ W S
Sbjct: 138 NKTNVKFLAITTDCLQI--LAYGNQESKLIILASGGPQALVNIMRT---YTYEKLLWTTS 192
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 87/236 (36%), Gaps = 17/236 (7%)
Query: 12 AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH 71
A+ G +P VK+L SP D + ++ L N+ + V L ++ LN
Sbjct: 81 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK- 139
Query: 72 ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSL---- 127
N+ I T L L G + P LV+ + W S
Sbjct: 140 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQ--ALVNIMRTYTYEKLLWTTSRVLKV 197
Query: 128 --LCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINC 185
+C K A++EAG L L PSQ ++ L T+ N++ Q
Sbjct: 198 LSVCSSNK----PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLL 253
Query: 186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
G L LLG + ++ A I+SN+T N + V G I LV + A
Sbjct: 254 GTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 305
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 15/203 (7%)
Query: 8 EDKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQ 67
+K A+V+ G + L PS + +W L N++ + + G L+ L Q
Sbjct: 203 SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE----GMEGLLGTLVQ 258
Query: 68 LNNHENLSMKRIATWTLSNL-CGG-KPRPIFDQVRPCLPTLAQLVHSND-EHVMSNACWG 124
L +++++ A LSNL C K + + QV + ++ + D E + A
Sbjct: 259 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 318
Query: 125 LSLLCDGGKNDEI--QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVG---NIARGDYSQT 179
L L + E+ AV P +VKLL PS L +A TVG N+A +
Sbjct: 319 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA--TVGLIRNLALCPANHA 376
Query: 180 LYIINCGALPYLLGLLIDNHKTS 202
+ GA+P L+ LL+ H+ +
Sbjct: 377 -PLREQGAIPRLVQLLVRAHQDT 398
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN 198
A+ ++G P LV +LG P SVL A+ T+ N+ + + G L ++ LL
Sbjct: 229 AIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL--- 285
Query: 199 HKTSIKNYACWI--ISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254
+KT++K A + + GN+E ++ +G LVN+++ Y ++ W S
Sbjct: 286 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT---YTYEKLLWTTS 340
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 15/202 (7%)
Query: 9 DKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQL 68
+K A+V+ G + L PS + +W L N++ + + G L+ L QL
Sbjct: 352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE----GMEGLLGTLVQL 407
Query: 69 NNHENLSMKRIATWTLSNL-CGG-KPRPIFDQVRPCLPTLAQLVHSND-EHVMSNACWGL 125
+++++ A LSNL C K + + QV + ++ + D E + A L
Sbjct: 408 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467
Query: 126 SLLCDGGKNDEI--QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVG---NIARGDYSQTL 180
L ++ E+ AV P +VKLL PS L +A TVG N+A +
Sbjct: 468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA--TVGLIRNLALCPANHA- 524
Query: 181 YIINCGALPYLLGLLIDNHKTS 202
+ GA+P L+ LL+ H+ +
Sbjct: 525 PLREQGAIPRLVQLLVRAHQDT 546
>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc
Length = 344
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 65/145 (44%), Gaps = 15/145 (10%)
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG----- 174
+A W LS C K D I AV G LV L + SQ+ + + G I R
Sbjct: 202 SALWNLSAHCTENKAD-ICAV--DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 258
Query: 175 ----DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGL 230
D+ Q L NC L LL L +H +I + AC + N++A N + +A+ D G
Sbjct: 259 ATNEDHRQILRENNC--LQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDXGA 315
Query: 231 IGPLVNLLQNAVFYIKKEAAWAISN 255
+ L NL+ + I +A A+ N
Sbjct: 316 VSXLKNLIHSKHKXIAXGSAAALRN 340
>pdb|3NMW|A Chain A, Crytal Structure Of Armadillo Repeats Domain Of Apc
pdb|3NMW|B Chain B, Crytal Structure Of Armadillo Repeats Domain Of Apc
Length = 354
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 65/145 (44%), Gaps = 15/145 (10%)
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG----- 174
+A W LS C K D I AV G LV L + SQ+ + + G I R
Sbjct: 193 SALWNLSAHCTENKAD-ICAV--DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 249
Query: 175 ----DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGL 230
D+ Q L NC L LL L +H +I + AC + N++A N + +A+ D G
Sbjct: 250 ATNEDHRQILRENNC--LQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDXGA 306
Query: 231 IGPLVNLLQNAVFYIKKEAAWAISN 255
+ L NL+ + I +A A+ N
Sbjct: 307 VSXLKNLIHSKHKXIAXGSAAALRN 331
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 65/145 (44%), Gaps = 15/145 (10%)
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG----- 174
+A W LS C K D I AV G LV L + SQ+ + + G I R
Sbjct: 193 SALWNLSAHCTENKAD-ICAV--DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 249
Query: 175 ----DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGL 230
D+ Q L NC L LL L +H +I + AC + N++A N + +A+ D G
Sbjct: 250 ATNEDHRQILRENNC--LQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA 306
Query: 231 IGPLVNLLQNAVFYIKKEAAWAISN 255
+ L NL+ + I +A A+ N
Sbjct: 307 VSMLKNLIHSKHKMIAMGSAAALRN 331
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 65/145 (44%), Gaps = 15/145 (10%)
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG----- 174
+A W LS C K D I AV G LV L + SQ+ + + G I R
Sbjct: 309 SALWNLSAHCTENKAD-ICAV--DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 365
Query: 175 ----DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGL 230
D+ Q L NC L LL L +H +I + AC + N++A N + +A+ D G
Sbjct: 366 ATNEDHRQILRENNC--LQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA 422
Query: 231 IGPLVNLLQNAVFYIKKEAAWAISN 255
+ L NL+ + I +A A+ N
Sbjct: 423 VSMLKNLIHSKHKMIAMGSAAALRN 447
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 64 LLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDE 115
LL+ L H+ M R TL + + I + CLP L QL+H ND+
Sbjct: 37 LLSMLGTHDKDDMSR----TLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDK 84
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 65/145 (44%), Gaps = 15/145 (10%)
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG----- 174
+A W LS C K D I AV G LV L + SQ+ + + G I R
Sbjct: 195 SALWNLSAHCTENKAD-ICAV--DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 251
Query: 175 ----DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGL 230
D+ Q L NC L LL L +H +I + AC + N++A N + +A+ D G
Sbjct: 252 ATNEDHRQILRENNC--LQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA 308
Query: 231 IGPLVNLLQNAVFYIKKEAAWAISN 255
+ L NL+ + I +A A+ N
Sbjct: 309 VSMLKNLIHSKHKMIAMGSAAALRN 333
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 65/145 (44%), Gaps = 15/145 (10%)
Query: 120 NACWGLSLLCDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARG----- 174
+A W LS C K D I AV G LV L + SQ+ + + G I R
Sbjct: 193 SALWNLSAHCTENKAD-ICAV--DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 249
Query: 175 ----DYSQTLYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGL 230
D+ Q L NC L LL L +H +I + AC + N++A N + +A+ D G
Sbjct: 250 ATNEDHRQILRENNC--LQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA 306
Query: 231 IGPLVNLLQNAVFYIKKEAAWAISN 255
+ L NL+ + I +A A+ N
Sbjct: 307 VSMLKNLIHSKHKMIAMGSAAALRN 331
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 13 VVDHGAVPIFVKLLASPSDDIRMQSVWALGNI--AAESPRFRDLVLGEAALIPLLTQLNN 70
+V H +P + + +P R +V A G I E + + LV+ +P L +L
Sbjct: 363 IVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMK 418
Query: 71 HENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH--SNDEHVMSNACWGLSLL 128
++ ++ A WT+ +C P + V P L L+ S + V SN CW S L
Sbjct: 419 DPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAEPRVASNVCWAFSSL 477
Query: 129 CDGG 132
+
Sbjct: 478 AEAA 481
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 13 VVDHGAVPIFVKLLASPSDDIRMQSVWALGNI--AAESPRFRDLVLGEAALIPLLTQLNN 70
+V H +P + + +P R +V A G I E + + LV+ +P L +L
Sbjct: 363 IVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMK 418
Query: 71 HENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH--SNDEHVMSNACWGLSLL 128
++ ++ A WT+ +C P + V P L L+ S + V SN CW S L
Sbjct: 419 DPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAEPRVASNVCWAFSSL 477
Query: 129 CDGG 132
+
Sbjct: 478 AEAA 481
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 13 VVDHGAVPIFVKLLASPSDDIRMQSVWALGNI--AAESPRFRDLVLGEAALIPLLTQLNN 70
+V H +P + + +P R +V A G I E + + LV+ +P L +L
Sbjct: 363 IVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMK 418
Query: 71 HENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH--SNDEHVMSNACWGLSLL 128
++ ++ A WT+ +C P + V P L L+ S + V SN CW S L
Sbjct: 419 DPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAEPRVASNVCWAFSSL 477
Query: 129 CDGG 132
+
Sbjct: 478 AEAA 481
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 13 VVDHGAVPIFVKLLASPSDDIRMQSVWALGNI--AAESPRFRDLVLGEAALIPLLTQLNN 70
+V H +P + + +P R +V A G I E + + LV+ +P L +L
Sbjct: 238 IVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMK 293
Query: 71 HENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH--SNDEHVMSNACWGLSLL 128
++ ++ A WT+ +C P + V P L L+ S + V SN CW S L
Sbjct: 294 DPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAEPRVASNVCWAFSSL 352
Query: 129 CDGG 132
+
Sbjct: 353 AEAA 356
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 13 VVDHGAVPIFVKLLASPSDDIRMQSVWALGNI--AAESPRFRDLVLGEAALIPLLTQLNN 70
+V H +P + + +P R +V A G+I E + + LV+ +P L +L
Sbjct: 363 IVPH-VLPFIKEHIKNPDWRYRDAAVMAFGSILEGPEPNQLKPLVIQA---MPTLIELMK 418
Query: 71 HENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVH--SNDEHVMSNACWGLSLL 128
++ ++ WT+ +C P + V P L L+ S + V SN CW S L
Sbjct: 419 DPSVVVRDTTAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAEPRVASNVCWAFSSL 477
Query: 129 CDGG 132
+
Sbjct: 478 AEAA 481
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN 198
A+ ++G P LVK+LG P SVL A+ T+ N+ + + G L ++ LL
Sbjct: 92 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL--- 148
Query: 199 HKTSIKNYA 207
+KT++K A
Sbjct: 149 NKTNVKFLA 157
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 12 AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNI 44
A+ G +P VK+L SP D + ++ L N+
Sbjct: 92 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 124
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN 198
A+ ++G P LVK+LG P SVL A+ T+ N+ + + G L ++ LL
Sbjct: 92 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL--- 148
Query: 199 HKTSIKNYA 207
+KT++K A
Sbjct: 149 NKTNVKFLA 157
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 12 AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNI 44
A+ G +P VK+L SP D + ++ L N+
Sbjct: 92 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 124
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 8/118 (6%)
Query: 139 AVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINCGALPYLLGLLIDN 198
A+ ++G P LVK LG P SVL A+ T+ N+ + G L + LL
Sbjct: 38 AIFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLHQEGAKXAVRLAGGLQKXVALL--- 94
Query: 199 HKTSIKNYACWI--ISNITAGNREQIQAVIDAGLIGPLVNLLQNAVFYIKKEAAWAIS 254
+KT++K A + + GN+E ++ +G LVN+ + Y ++ W S
Sbjct: 95 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIXRT---YTYEKLLWTTS 149
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 85/236 (36%), Gaps = 17/236 (7%)
Query: 12 AVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNH 71
A+ G +P VK L SP D + ++ L N+ + V L + LN
Sbjct: 38 AIFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLHQEGAKXAVRLAGGLQKXVALLNK- 96
Query: 72 ENLSMKRIATWTLSNLCGGKPRPIFDQVRPCLPTLAQLVHSNDEHVMSNACWGLSLL--- 128
N+ I T L L G + P LV+ + W S +
Sbjct: 97 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQ--ALVNIXRTYTYEKLLWTTSRVLKV 154
Query: 129 ---CDGGKNDEIQAVIEAGVCPRLVKLLGHPSQSVLTQALHTVGNIARGDYSQTLYIINC 185
C K A++EAG L L PSQ ++ L T+ N++ Q
Sbjct: 155 LSVCSSNK----PAIVEAGGXQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGXEGLL 210
Query: 186 GALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQIQAVIDAGLIGPLVNLLQNA 241
G L LLG + ++ A I+SN+T N + V G I LV + A
Sbjct: 211 GTLVQLLG----SDDINVVTCAAGILSNLTCNNYKNKXXVCQVGGIEALVRTVLRA 262
>pdb|3RQZ|A Chain A, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
pdb|3RQZ|B Chain B, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
pdb|3RQZ|C Chain C, Crystal Structure Of Metallophosphoesterase From
Sphaerobacter Thermophilus
Length = 246
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 22 FVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIA 80
V L A SD R+ +W+LG+I PR R+ V L P ++ + NH+ + R++
Sbjct: 16 LVALEAVLSDAGRVDDIWSLGDIVGYGPRPRECVELVRVLAPNISVIGNHDWACIGRLS 74
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 18/148 (12%)
Query: 19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKR 78
+P+F L + D +R+ +V A NIA P+ DL EA ++P L Q +
Sbjct: 206 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ-EDL---EALVMPTLRQAAEDK------ 255
Query: 79 IATWTLSNLCGGKPRPIFDQVRP------CLPTLAQLVHSNDEHVMSNACWGLSLLCDGG 132
+W + + K + V P +P L+ + V + A + C+
Sbjct: 256 --SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 313
Query: 133 KNDEIQAVIEAGVCPRLVKLLGHPSQSV 160
D + VI + + P + +L+ +Q V
Sbjct: 314 SADCRENVIMSQILPCIKELVSDANQHV 341
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 18/148 (12%)
Query: 19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKR 78
+P+F L + D +R+ +V A NIA P+ DL EA ++P L Q +
Sbjct: 205 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ-EDL---EALVMPTLRQAAEDK------ 254
Query: 79 IATWTLSNLCGGKPRPIFDQVRP------CLPTLAQLVHSNDEHVMSNACWGLSLLCDGG 132
+W + + K + V P +P L+ + V + A + C+
Sbjct: 255 --SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 312
Query: 133 KNDEIQAVIEAGVCPRLVKLLGHPSQSV 160
D + VI + + P + +L+ +Q V
Sbjct: 313 SADCRENVIMSQILPCIKELVSDANQHV 340
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 18/148 (12%)
Query: 19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKR 78
+P+F L + D +R+ +V A NIA P+ DL EA ++P L Q +
Sbjct: 199 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ-EDL---EALVMPTLRQAAEDK------ 248
Query: 79 IATWTLSNLCGGKPRPIFDQVRP------CLPTLAQLVHSNDEHVMSNACWGLSLLCDGG 132
+W + + K + V P +P L+ + V + A + C+
Sbjct: 249 --SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 306
Query: 133 KNDEIQAVIEAGVCPRLVKLLGHPSQSV 160
D + VI + + P + +L+ +Q V
Sbjct: 307 SADCRENVIMSQILPCIKELVSDANQHV 334
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 18/148 (12%)
Query: 19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKR 78
+P+F L + D +R+ +V A NIA P+ DL EA ++P L Q +
Sbjct: 197 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ-EDL---EALVMPTLRQAAEDK------ 246
Query: 79 IATWTLSNLCGGKPRPIFDQVRP------CLPTLAQLVHSNDEHVMSNACWGLSLLCDGG 132
+W + + K + V P +P L+ + V + A + C+
Sbjct: 247 --SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 304
Query: 133 KNDEIQAVIEAGVCPRLVKLLGHPSQSV 160
D + VI + + P + +L+ +Q V
Sbjct: 305 SADCRENVIMSQILPCIKELVSDANQHV 332
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKR 78
+P+F L + D +R+ +V A NIA P+ DL EA ++P L Q +
Sbjct: 205 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ-EDL---EALVMPTLRQAAEDK------ 254
Query: 79 IATWTLSNLCGGKPRPIFDQVRP------CLPTLAQLVHSNDEHVMSNACWGLSLLCDGG 132
+W + + K + V P +P L+ + V + A + C+
Sbjct: 255 --SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 312
Query: 133 KNDEIQAVIEAGVCPRLVKLLGHPSQSV 160
D + VI + P + +L+ +Q V
Sbjct: 313 SADCRENVIMTQILPCIKELVSDANQHV 340
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 19 VPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKR 78
+P+F L + D +R+ +V A NIA P+ DL EA ++P L Q +
Sbjct: 206 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ-EDL---EALVMPTLRQAAEDK------ 255
Query: 79 IATWTLSNLCGGKPRPIFDQVRP------CLPTLAQLVHSNDEHVMSNACWGLSLLCDGG 132
+W + + K + V P +P L+ + V + A + C+
Sbjct: 256 --SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL 313
Query: 133 KNDEIQAVIEAGVCPRLVKLLGHPSQSV 160
D + VI + P + +L+ +Q V
Sbjct: 314 SADCRENVIMTQILPCIKELVSDANQHV 341
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 97/220 (44%), Gaps = 17/220 (7%)
Query: 9 DKKAVVDHGAVPIFVKLLASPSDDIRMQSVWALGNIAAESPRFRDLVLGEAALIPLLTQL 68
+K A+V+ G + K L S S + +W L N++ + + L E+ L L+ QL
Sbjct: 221 NKPAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNLSDVATKQEGL---ESVLKILVNQL 277
Query: 69 NNHENLSMKRIATWTLSNLC--GGKPRPIFDQVRPCLPTLAQLVHSND-EHVMSNACWGL 125
+ +++++ AT TLSNL K + + Q + ++ + D + + A L
Sbjct: 278 SV-DDVNVLTCATGTLSNLTCNNSKNKTLVTQNSGVEALIHAILRAGDKDDITEPAVCAL 336
Query: 126 SLLCDGGKNDEI---QAVIEAGVCPRLVKLLGHPSQSVLTQALHTVG---NIARGDYSQT 179
L E+ + G+ P +VKLL P+Q L +A T+G N+A +
Sbjct: 337 RHLTSRHPEAEMAQNSVRLNYGI-PAIVKLLNQPNQWPLVKA--TIGLIRNLALCPANHA 393
Query: 180 LYIINCGALPYLLGLLIDNHKTSIKNYACWIISNITAGNR 219
+ +P L+ LL+ H+ + ++ A T G R
Sbjct: 394 -PLQEAAVIPRLVQLLVKAHQDAQRHVAAGTQQPYTDGVR 432
>pdb|2DB0|A Chain A, Crystal Structure Of Ph0542
pdb|2DB0|B Chain B, Crystal Structure Of Ph0542
Length = 253
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 12/103 (11%)
Query: 39 WALGNIAAESPRFRDLVLGEAALIPLLTQLNNHENLSMKRIATWTLSNLCGGKPRPIFDQ 98
+AL IA +P ++ + + +L+ N + L T N F
Sbjct: 129 YALEEIAKANPMLMASIVRD--FMSMLSSKNREDKL--------TALNFIEAMGENSFKY 178
Query: 99 VRPCLPTLAQLVHSNDEHVMSNACWGLSLLCDGGKNDEIQAVI 141
V P LP + L+H DE V ++A L L ND+++ V+
Sbjct: 179 VNPFLPRIINLLHDGDEIVRASAVEALVHLA--TLNDKLRKVV 219
>pdb|4EZC|A Chain A, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus
pdb|4EZC|B Chain B, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus
pdb|4EZC|C Chain C, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus
pdb|4EZD|A Chain A, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus Bound To Selenourea
pdb|4EZD|B Chain B, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus Bound To Selenourea
pdb|4EZD|C Chain C, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus Bound To Selenourea
Length = 384
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 163 QALHTVGNIARGDYSQTLYIIN-CGALPYLLGLLIDNHKTSIKNYACWIISNITAGNREQ 221
QAL V + RG SQ +++ N + L+GLL+ N ++ ++S +TA Q
Sbjct: 49 QALQFVDWVLRG-ISQVVFVSNPISGILILVGLLVQNPWCALNGCVGTVVSTLTALLLSQ 107
Query: 222 IQAVIDAGLIG 232
++ I AGL G
Sbjct: 108 DRSAITAGLQG 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,823,946
Number of Sequences: 62578
Number of extensions: 417001
Number of successful extensions: 1866
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 920
Number of HSP's gapped (non-prelim): 293
length of query: 383
length of database: 14,973,337
effective HSP length: 101
effective length of query: 282
effective length of database: 8,652,959
effective search space: 2440134438
effective search space used: 2440134438
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)